chr_1	start_1	end_1	type_1	name_1	subtype_1	id_1	strand_properness_1	count_1	chr_2	start_2	end_2	type_2	name_2	subtype_2	id_2	strand_properness_2	count_2	read_pair_count	ln_p_value
chrX	58353719	58353809	LINE	L1VL4	L1	chrXL1VL458353701	ProperStrand	1	chr7	108260809	108260909	protein_coding	Fchsd2	intron	ENSMUSG00000030691	ProperStrand	7	1	-inf
chr2	128680426	128684582	LTR	ORR1D1	MaLR	chr2ORR1D1128684494	NonProperStrand	1	chr2	128679545	128680110	protein_coding	Tmem87b	utr3	ENSMUSG00000014353	NonProperStrand	20	1	-inf
chr17	39846976	39847012	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	114756847	114756865	LTR	MTEb	MaLR	chr9MTEb114756724	ProperStrand	1	1	-inf
chr5	53645926	53645990	SINE	B1_Mus1	Alu	chr5B1_Mus153645892	NonProperStrand	5	chr5	53645647	53645721	SINE	RSINE1	B4	chr5RSINE153645603	ProperStrand	1	1	-inf
chr18	61375872	61375961	SINE	MIRb	MIR	chr18MIRb61375813	ProperStrand	1	chr13	97899505	97899522	protein_coding	Nsa2	utr3	ENSMUSG00000060739	ProperStrand	3	1	-inf
chr12	52573735	52573801	LTR	MTB	MaLR	chr12MTB52573391	ProperStrand	1	chr9	123461931	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	37491335	37491420	LINE	Lx4A	L1	chr9Lx4A37490257	NonProperStrand	13	chr9	123461842	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr17	39846650	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	174346014	174346281	LTR	MTA_Mm	MaLR	chr2MTA_Mm174345802	NonProperStrand	1	1	-inf
chrX	79918466	79918483	LINE	L1Md_F2	L1	chrXL1Md_F279917686	NonProperStrand	4	chr18	36671488	36671627	protein_coding	Hbegf	intron	ENSMUSG00000024486	ProperStrand	6	1	-inf
chr15	15640212	15640302	LINE	L1M2	L1	chr15L1M215640235	NonProperStrand	1	chr15	15639878	15639978	LTR	RLTR40	ERVK	chr15RLTR4015639774	NonProperStrand	1	1	-inf
chr17	87978504	87978619	LTR	RMER16-int	ERVK	chr17RMER16-int87978382	NonProperStrand	3	chr9	118674951	118674985	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr17	39848272	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	26634472	26634542	protein_coding	Fbxl7	intron	ENSMUSG00000043556	ProperStrand	18	1	-3.5676
chr18	76931739	76931835	LTR	MTEa	MaLR	chr18MTEa76931695	NonProperStrand	1	chr18	76930411	76930465	LTR	ORR1A2	MaLR	chr18ORR1A276930339	NonProperStrand	1	1	-inf
chr13	9834308	9834441	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	4	-10.8492
chr12	79081319	79081347	SINE	MIRb	MIR	chr12MIRb79081304	NonProperStrand	1	chr7	49436442	49436460	protein_coding	Vmn2r60	intron	ENSMUSG00000090619	NonProperStrand	4	1	-inf
chr15	95958323	95958368	LTR	ERVL-int	ERVL	chr15ERVL-int95957246	ProperStrand	1	chr15	95959232	95959306	LTR	MLT2B2	ERVL	chr15MLT2B295959140	ProperStrand	1	1	-inf
chr8	75110099	75110147	protein_coding	Tmem38a	utr3	ENSMUSG00000031791	ProperStrand	39	chr12	67661160	67661221	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-12.3137
chr10	4109694	4109753	LINE	L1Md_F2	L1	chr10L1Md_F24108646	ProperStrand	6	chr10	4112618	4112684	LINE	L1Md_F2	L1	chr10L1Md_F24112488	ProperStrand	1	1	-inf
chr9	20923705	20923760	protein_coding	Tyk2	intron	ENSMUSG00000032175	ProperStrand	108	chr1	72711755	72712144	protein_coding	Ankar	exon	ENSMUSG00000039342	NonProperStrand	61	1	-10.8082
chr16	70508837	70508925	protein_coding	Gbe1	intron	ENSMUSG00000022707	ProperStrand	19	chr4	32709451	32709510	protein_coding	Casp8ap2	intron	ENSMUSG00000028282	ProperStrand	52	1	-14.6432
chr14	103082373	103082421	LINE	L1Md_F2	L1	chr14L1Md_F2103082089	ProperStrand	9	chr9	85717593	85718399	protein_coding	9330154J02Rik	intron	ENSMUSG00000056031	ProperStrand	15	1	-18.6074
chr8	70678040	70678130	LINE	Lx9	L1	chr8Lx970678042	ProperStrand	21	chr8	70678151	70678251	LINE	Lx9	L1	chr8Lx970678152	NonProperStrand	8	8	-inf
chr5	115151810	115151900	LTR	RMER12	ERVK	chr5RMER12115151763	ProperStrand	1	chr5	115151959	115152059	SINE	B2_Mm2	B2	chr5B2_Mm2115151939	ProperStrand	1	1	-inf
chr4	134746350	134746403	LTR	MTD	MaLR	chr4MTD134746213	NonProperStrand	1	chr4	134746426	134746507	LTR	MTE2a	MaLR	chr4MTE2a134746447	NonProperStrand	1	1	-inf
chr17	39846720	39847128	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	98931468	98934385	protein_coding	Dnajc22	intron	ENSMUSG00000038009	NonProperStrand	43	8	-6.0853
chr3	56183316	56183336	LINE	L1Md_A	L1	chr3L1Md_A56183116	ProperStrand	2	chr17	39843829	39843934	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-10.2298
chr10	45450107	45450136	LTR	RLTR20C	ERVK	chr10RLTR20C45450083	ProperStrand	1	chr6	33549592	33549712	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-inf
chr12	80223003	80223093	DNA	RCHARR1	MER1_type	chr12RCHARR180223000	NonProperStrand	1	chr12	80222895	80222995	LTR	RMER16	ERVK	chr12RMER1680222592	ProperStrand	3	1	-inf
chr5	146260994	146261041	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	91596071	91596180	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-4.4619
chr12	99650801	99650901	Simple_repeat	(GAA)n	Simple_repeat	chr12(GAA)n99650758	NonProperStrand	1	chr2	44861519	44861609	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	1	-inf
chr17	39846509	39846529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	24120453	24120592	LTR	MTB	MaLR	chr19MTB24120194	ProperStrand	1	1	-inf
chr4	33027278	33027378	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	chr1	52919027	52919117	protein_coding	Hibch	intron	ENSMUSG00000041426	NonProperStrand	34	6	-22.0278
chr12	106311120	106311141	LINE	L1_Mur3	L1	chr12L1_Mur3106310407	NonProperStrand	2	chr17	39846647	39846664	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr7	25623908	25624062	processed_transcript	Gm5893	.	ENSMUSG00000011350	ProperStrand	7	chr17	70963728	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-10.6034
chr12	73983629	73983700	protein_coding	4930447C04Rik	intron	ENSMUSG00000021098	NonProperStrand	6	chr19	45529893	45529912	protein_coding	Btrc	intron	ENSMUSG00000025217	NonProperStrand	40	1	-17.7225
chr2	22744866	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	131573830	131574035	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	2	-6.4906
chr14	59343146	59343227	Low_complexity	CT-rich	Low_complexity	chr14CT-rich59343095	NonProperStrand	1	chr19	5664656	5664733	protein_coding	Pcnxl3	utr3	ENSMUSG00000054874	ProperStrand	84	1	-inf
chr3	12714066	12714166	LINE	L1MD2	L1	chr3L1MD212714059	ProperStrand	1	chr3	12714518	12714608	LTR	ORR1A3	MaLR	chr3ORR1A312714288	ProperStrand	1	1	-inf
chr9	31293657	31293680	LINE	L1_Mur3	L1	chr9L1_Mur331293648	NonProperStrand	1	chr9	31293976	31294020	SINE	B2_Mm2	B2	chr9B2_Mm231293867	NonProperStrand	1	1	-inf
chr8	111006234	111006290	LINE	L1_Mus3	L1	chr8L1_Mus3111005919	NonProperStrand	1	chr17	39846583	39846660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	35384498	35384588	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	chr14	98351298	98351398	protein_coding	Dach1	intron	ENSMUSG00000055639	ProperStrand	11	1	-17.0923
chr2	3193662	3193754	LINE	Lx6	L1	chr2Lx63193496	NonProperStrand	1	chr17	39843728	39843827	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr6	119840783	119840854	LTR	MTC-int	MaLR	chr6MTC-int119840739	ProperStrand	6	chr6	119840652	119840683	SINE	B1_Mus1	Alu	chr6B1_Mus1119840599	ProperStrand	1	1	-inf
chr9	110944231	110945855	LINE	Lx3C	L1	chr9Lx3C110945252	ProperStrand	16	chr9	110943225	110944205	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-13.6058
chr16	3749827	3749883	protein_coding	Zfp263	utr3	ENSMUSG00000022529	ProperStrand	15	chr1	136751084	136751160	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-13.1284
chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.8860
chrX	152830520	152830555	LINE	Lx7	L1	chrXLx7152830261	NonProperStrand	1	chr8	94087432	94089767	protein_coding	Fto	intron	ENSMUSG00000055932	NonProperStrand	56	1	-inf
chr11	97781674	97781704	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr13	90028737	90028804	protein_coding	Xrcc4	intron	ENSMUSG00000021615	ProperStrand	57	1	-13.9009
chr8	14381771	14381871	protein_coding-noncoding	Dlgap2	utr5	ENSMUSG00000047495	ProperStrand	1	chr8	14381680	14381770	protein_coding	Dlgap2	intron	ENSMUSG00000047495	ProperStrand	39	1	-inf
chr8	120397721	120397758	LINE	L1MC3	L1	chr8L1MC3120397476	NonProperStrand	1	chr13	9553352	9553379	protein_coding	Dip2c	intron	ENSMUSG00000048264	NonProperStrand	18	1	-inf
chr9	77471866	77471899	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n77471847	NonProperStrand	1	chr2	31694326	31694448	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	1	-inf
chr10	40258645	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr10	80670002	80670069	protein_coding	Atcay	intron	ENSMUSG00000034958	ProperStrand	37	1	-6.3084
chr8	86867126	86867207	SINE	B3	B2	chr8B386867135	ProperStrand	2	chr8	86868535	86868589	SINE	B4	B4	chr8B486868393	ProperStrand	1	1	-inf
chr2	82610222	82610322	DNA	Charlie10	MER1_type	chr2Charlie1082610065	ProperStrand	1	chr11	77803669	77803759	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	1	-inf
chr10	60362622	60362774	LINE	L1MD	L1	chr10L1MD60362570	ProperStrand	2	chr6	71980901	71980975	LINE	L1Md_A	L1	chr6L1Md_A71980578	NonProperStrand	6	2	-inf
chr17	39848678	39848781	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr12	70777657	70777675	protein_coding	Sos2	intron	ENSMUSG00000034801	ProperStrand	9	1	-5.1969
chr2	23128633	23128657	LINE	L1_Mur1	L1	chr2L1_Mur123126353	NonProperStrand	4	chr14	19872702	19872736	SINE	B1_Mus1	Alu	chr14B1_Mus119872700	ProperStrand	1	1	-inf
chr7	16309824	16312153	LINE	Lx3A	L1	chr7Lx3A16307925	NonProperStrand	2	chr17	39846767	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	49711989	49712079	LTR	MTE-int	MaLR	chr11MTE-int49711997	ProperStrand	4	chr11	49711871	49711973	Simple_repeat	(GGGA)n	Simple_repeat	chr11(GGGA)n49711722	NonProperStrand	2	2	-inf
chr17	39847530	39847602	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	129058781	129058843	LTR	RMER10B	ERVL	chr4RMER10B129058463	ProperStrand	4	1	-3.7035
chr1	58443066	58443156	LINE	L1VL2	L1	chr1L1VL258443003	ProperStrand	1	chr1	58442879	58442979	SINE	B1_Mm	Alu	chr1B1_Mm58442857	ProperStrand	1	1	-inf
chr17	86004816	86004927	lincRNA	Six3os1	intron	ENSMUSG00000093460	ProperStrand	25	chr17	45057856	45057892	protein_coding	Supt3h	intron	ENSMUSG00000038954	ProperStrand	67	1	-13.5740
chr14	47298320	47308571	SINE	B3A	B2	chr14B3A47298248	NonProperStrand	2	chr14	47298372	47310459	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n47298556	ProperStrand	1	1	-inf
chr9	92270302	92270422	LINE	Lx8	L1	chr9Lx892270259	NonProperStrand	1	chr11	116439516	116439543	protein_coding	Ube2o	intron	ENSMUSG00000020802	NonProperStrand	55	1	-inf
chr10	81264740	81264829	LTR	RLTR10-int	ERVK	chr10RLTR10-int81264282	ProperStrand	1	chr10	81264869	81264906	LTR	RLTR10	ERVK	chr10RLTR1081264857	ProperStrand	4	1	-inf
chr2	73639402	73639524	SINE	B1_Mm	Alu	chr2B1_Mm73639428	ProperStrand	1	chr14	52300328	52300345	pseudogene	Gm17186	.	ENSMUSG00000090603	ProperStrand	7	1	-inf
chr17	39843501	39843554	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	75220554	75220632	protein_coding	Mapk6	intron	ENSMUSG00000042688	NonProperStrand	40	1	-3.2866
chr11	68904392	68904439	protein_coding	Vamp2	utr3	ENSMUSG00000020894	ProperStrand	37	chr15	72890552	72890609	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	1	-9.6499
chr17	53479355	53479445	LINE	L1_Mur1	L1	chr17L1_Mur153479064	ProperStrand	6	chr17	53479520	53479620	LINE	L1_Mur1	L1	chr17L1_Mur153479472	ProperStrand	7	6	-inf
chr15	58942127	58942151	Simple_repeat	(TTCC)n	Simple_repeat	chr15(TTCC)n58942079	NonProperStrand	1	chr15	58941947	58942024	Simple_repeat	(TTTC)n	Simple_repeat	chr15(TTTC)n58941900	NonProperStrand	1	1	-inf
chr11	48805625	48806049	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chrX	105975079	105975169	protein_coding	Brwd3	intron	ENSMUSG00000063663	NonProperStrand	26	1	-10.9592
chr17	39846587	39846676	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	161123826	161123845	LTR	MER21B	ERV1	chr2MER21B161123531	NonProperStrand	5	1	-3.1907
chr12	87344110	87344208	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	132	chr12	17280404	17280420	protein_coding	Pdia6	intron	ENSMUSG00000020571	ProperStrand	22	2	-20.8297
chr1	182456537	182456637	LINE	Lx9	L1	chr1Lx9182456540	ProperStrand	1	chr1	182456730	182456820	SINE	B3	B2	chr1B3182456647	ProperStrand	1	1	-inf
chr11	98030291	98030355	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	chr6	96186860	96186876	protein_coding	Fam19a1	intron	ENSMUSG00000059187	NonProperStrand	18	1	-13.1264
chr5	52799212	52799302	LTR	MTD	MaLR	chr5MTD52798949	NonProperStrand	2	chr5	52799289	52799389	Simple_repeat	(A)n	Simple_repeat	chr5(A)n52799302	ProperStrand	1	1	-inf
chr6	129548899	129548999	LINE	L1M2	L1	chr6L1M2129548853	NonProperStrand	1	chr6	129548515	129548605	protein_coding	Klrd1	utr3	ENSMUSG00000030165	ProperStrand	9	1	-inf
chr4	127047982	127048053	SINE	B4A	B4	chr4B4A127047998	NonProperStrand	1	chr16	22162948	22163013	protein_coding	Igf2bp2	exon	ENSMUSG00000033581	ProperStrand	170	1	-inf
chr8	31160559	31161737	LINE	Lx5	L1	chr8Lx531160206	NonProperStrand	3	chr8	31160814	31161801	LINE	Lx5	L1	chr8Lx531160206	ProperStrand	1	1	-inf
chr6	90923532	90923569	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n90923539	NonProperStrand	1	chr12	54696787	54696906	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-inf
chr3	45633996	45634096	LINE	L1Md_A	L1	chr3L1Md_A45634002	NonProperStrand	1	chr3	45633836	45633926	LINE	L1_Mus3	L1	chr3L1_Mus345633766	NonProperStrand	1	1	-inf
chr14	32552001	32552085	protein_coding	Ankrd28	intron	ENSMUSG00000014496	NonProperStrand	75	chr2	119954781	119954851	protein_coding	Ehd4	intron	ENSMUSG00000027293	NonProperStrand	78	1	-11.0459
chr6	3201485	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	121208801	121208909	protein_coding	Oas3	exon	ENSMUSG00000032661	ProperStrand	3	1	-9.0398
chr11	8640348	8640398	LINE	L1_Mus1	L1	chr11L1_Mus18639949	ProperStrand	2	chr2	165276632	165276649	protein_coding	Slc13a3	intron	ENSMUSG00000018459	ProperStrand	44	1	-19.8653
chr3	26321224	26321241	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr8	122014510	122014649	protein_coding	Slc38a8	intron	ENSMUSG00000034224	NonProperStrand	70	1	-13.7486
chr5	135376716	135376762	Low_complexity	GA-rich	Low_complexity	chr5GA-rich135376702	NonProperStrand	1	chr5	135377119	135377172	SINE	MIRm	MIR	chr5MIRm135377108	NonProperStrand	1	1	-inf
chr15	85177750	85177778	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr11	69908174	69908484	protein_coding	Asgr2	intron	ENSMUSG00000040963	ProperStrand	43	1	-9.9739
chr8	62803628	62803728	LINE	L1Md_A	L1	chr8L1Md_A62797739	NonProperStrand	1	chr8	62803840	62803930	LINE	L1Md_A	L1	chr8L1Md_A62803712	NonProperStrand	2	1	-inf
chr14	70766532	70766560	LINE	L1_Mus3	L1	chr14L1_Mus370766197	NonProperStrand	1	chr14	70704729	70707334	protein_coding	Slc39a14	intron	ENSMUSG00000022094	ProperStrand	17	1	-inf
chr2	29148325	29148384	SINE	ID_B1	B4	chr2ID_B129148277	ProperStrand	1	chr2	29145461	29145481	SINE	RSINE1	B4	chr2RSINE129145368	ProperStrand	1	1	-inf
chr5	50471213	50471313	LINE	L1Md_F2	L1	chr5L1Md_F250466857	NonProperStrand	1	chr5	50471475	50471565	LTR	RLTR1C	ERV1	chr5RLTR1C50471342	ProperStrand	1	1	-inf
chr6	142956863	142956933	SINE	B2_Mm1a	B2	chr6B2_Mm1a142956761	NonProperStrand	1	chr6	142961563	142961623	protein_coding	5730419I09Rik	intron	ENSMUSG00000030279	ProperStrand	75	1	-inf
chr3	152778535	152778625	LTR	MLT1A0	MaLR	chr3MLT1A0152778438	ProperStrand	1	chr3	152778784	152778884	SINE	B4A	B4	chr3B4A152778729	ProperStrand	1	1	-inf
chr4	119276912	119276933	protein_coding-noncoding	Foxj3	utr5	ENSMUSG00000032998	NonProperStrand	7	chr8	78487796	78487904	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	1	-16.1749
chr8	106236815	106236935	LINE	Lx7	L1	chr8Lx7106236712	ProperStrand	7	chr17	39847230	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr5	109795324	109795378	LINE	Lx4B	L1	chr5Lx4B109795046	ProperStrand	1	chr17	39847676	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	115251442	115251542	LTR	ORR1D1	MaLR	chr1ORR1D1115251449	ProperStrand	1	chr1	115251287	115251375	LTR	RMER17D2	ERVK	chr1RMER17D2115251007	NonProperStrand	1	1	-inf
chr12	31774485	31774586	LINE	L1M3	L1	chr12L1M331774489	NonProperStrand	1	chr12	31774377	31774467	SINE	PB1D7	Alu	chr12PB1D731774384	NonProperStrand	1	1	-inf
chr17	39843863	39843884	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr14	47729896	47729984	antisense	Gm10371	.	ENSMUSG00000072589	NonProperStrand	6	1	-7.5378
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr15	83149657	83149683	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-10.4392
chr17	39843592	39843636	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	134966039	134966121	protein_coding	Clip2	utr3	ENSMUSG00000063146	NonProperStrand	37	1	-3.4296
chr9	114558938	114559038	LTR	MTD	MaLR	chr9MTD114558896	NonProperStrand	5	chr9	114559100	114559190	SINE	B1_Mur4	Alu	chr9B1_Mur4114559096	NonProperStrand	1	1	-inf
chr11	102567955	102568100	LTR	ORR1A2	MaLR	chr11ORR1A2102567754	ProperStrand	37	chr9	123461974	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.6303
chr17	39848635	39848749	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr9	22201635	22201665	SINE	B1_Mus1	Alu	chr9B1_Mus122201536	NonProperStrand	1	1	-inf
chr19	11481585	11481675	protein_coding	Ms4a4c	intron	ENSMUSG00000024675	ProperStrand	2	chr1	60256556	60256656	protein_coding	Nbeal1	intron	ENSMUSG00000073664	ProperStrand	53	1	-19.2441
chr1	21067789	21067876	protein_coding	Tram2	intron	ENSMUSG00000041779	ProperStrand	58	chr4	147808718	147808737	protein_coding	Ubiad1	utr3	ENSMUSG00000047719	ProperStrand	4	1	-17.7527
chr2	50398414	50398432	LINE	Lx	L1	chr2Lx50397259	ProperStrand	5	chr17	39846580	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr10	40258551	40258638	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr17	30246083	30246156	protein_coding	Zfand3	intron	ENSMUSG00000044477	NonProperStrand	157	1	-3.5298
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr1	38586032	38586060	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	1	-4.5883
chr12	111296578	111296624	LINE	Lx8	L1	chr12Lx8111296385	NonProperStrand	2	chr1	51769365	51769401	LINE	L1Md_T	L1	chr1L1Md_T51768084	ProperStrand	8	1	-23.4058
chr10	88833777	88833877	LTR	RMER19B	ERVK	chr10RMER19B88833355	NonProperStrand	2	chr8	70895782	70895872	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	2	-inf
chr7	128454981	128455016	LINE	L1PB4	L1	chr7L1PB4128454492	NonProperStrand	4	chr9	64175248	64175645	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-14.6259
chr17	54148956	54149056	LTR	ETnERV2-int	ERVK	chr17ETnERV2-int54148531	ProperStrand	1	chr17	54148327	54148417	LTR	SRV_MM-int	ERVK	chr17SRV_MM-int54148344	ProperStrand	1	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	38486315	38486439	protein_coding	1110001J03Rik	intron	ENSMUSG00000019689	ProperStrand	4	1	-3.6552
chr7	5931316	5931416	LTR	ETnERV-int	ERVK	chr7ETnERV-int5929814	NonProperStrand	1	chr7	5931587	5931677	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int5931455	NonProperStrand	1	1	-inf
chr17	12155840	12155870	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr16	11452111	11452220	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-6.7835
chr2	122581444	122581460	DNA	URR1B	MER1_type	chr2URR1B122581379	ProperStrand	1	chr9	65794976	65795076	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	NonProperStrand	105	1	-inf
chr7	118156105	118156605	SINE	B4	B4	chr7B4118156259	ProperStrand	4	chr7	118156633	118156723	SINE	B4	B4	chr7B4118156541	ProperStrand	5	4	-inf
chr4	146909937	146909961	LTR	BGLII_B	ERVK	chr4BGLII_B146909810	ProperStrand	1	chr4	147559221	147559255	SINE	ID_B1	B4	chr4ID_B1147559201	ProperStrand	1	1	-inf
chr6	59565546	59565636	LINE	Lx	L1	chr6Lx59565163	ProperStrand	1	chr6	59564887	59564987	LTR	ORR1B1-int	MaLR	chr6ORR1B1-int59564905	NonProperStrand	1	1	-inf
chr2	102829376	102829450	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr2	150830574	150830638	protein_coding	Ninl	intron	ENSMUSG00000068115	ProperStrand	29	1	-11.3439
chr11	70241461	70241561	DNA	URR1B	MER1_type	chr11URR1B70241469	NonProperStrand	1	chr11	70241331	70241421	LINE	L1_Rod	L1	chr11L1_Rod70241077	ProperStrand	1	1	-inf
chr10	40258620	40258687	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	5333513	5333569	protein_coding	Znrf3	intron	ENSMUSG00000041961	ProperStrand	102	1	-4.3351
chr5	139389732	139389832	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n139389723	NonProperStrand	5	chr5	139389845	139389935	Simple_repeat	(CATA)n	Simple_repeat	chr5(CATA)n139389815	NonProperStrand	5	5	-inf
chr2	75693296	75693415	protein_coding	Agps	intron	ENSMUSG00000042410	NonProperStrand	122	chr1	43813679	43813722	protein_coding	Uxs1	intron	ENSMUSG00000057363	ProperStrand	20	1	-12.8265
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr5	149189393	149189429	protein_coding	Slc7a1	intron	ENSMUSG00000041313	NonProperStrand	36	1	-5.4836
chr12	108139996	108140042	DNA	MER3	MER1_type	chr12MER3108139940	ProperStrand	1	chr12	67667922	67667998	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr17	39847642	39847700	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	107914273	107923340	protein_coding-noncoding	Zyg11b	utr3	ENSMUSG00000034636	ProperStrand	1	1	-inf
chr17	39847274	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	47822692	47822746	LTR	ORR1A3	MaLR	chr9ORR1A347822591	NonProperStrand	1	1	-inf
chr1	89089016	89089141	protein_coding	Chrnd	intron	ENSMUSG00000026251	ProperStrand	13	chr1	89102436	89102454	protein_coding	Chrng	exon	ENSMUSG00000026253	ProperStrand	8	1	-19.7796
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr10	40258612	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	1	-3.2708
chr17	34103608	34103633	protein_coding	Vps52	utr3	ENSMUSG00000024319	NonProperStrand	1	chr12	112920553	112920671	protein_coding	Trmt61a	intron	ENSMUSG00000060950	NonProperStrand	18	1	-inf
chr9	114698225	114698330	SINE	RSINE1	B4	chr9RSINE1114698222	ProperStrand	1	chr9	114701437	114701492	protein_coding	Cmtm8	intron	ENSMUSG00000041012	NonProperStrand	39	1	-inf
chr3	85916233	85916333	protein_coding	Sh3d19	intron	ENSMUSG00000028082	ProperStrand	3	chr9	121849661	121850249	protein_coding	1700048O20Rik	intron	ENSMUSG00000043773	NonProperStrand	13	1	-inf
chr9	75242177	75242249	protein_coding-noncoding	Mapk6	utr3	ENSMUSG00000042688	NonProperStrand	1	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	88137976	88138076	LINE	L1MC4	L1	chr11L1MC488137978	ProperStrand	3	chr11	88137882	88137972	SINE	B1F1	Alu	chr11B1F188137841	ProperStrand	3	3	-inf
chr17	34908689	34908779	pseudogene	Tnxa	.	ENSMUSG00000092200	ProperStrand	49	chr17	34907425	34907609	pseudogene	Skiv2l-ps1	.	ENSMUSG00000092543	NonProperStrand	19	13	-20.8680
chr18	4407495	4407596	LINE	L1_Mur3	L1	chr18L1_Mur34406769	NonProperStrand	2	chr18	67300227	67300317	protein_coding	Gnal	intron	ENSMUSG00000024524	ProperStrand	146	2	-inf
chr15	72896415	72896495	SINE	B4A	B4	chr15B4A72896280	NonProperStrand	1	chr11	3491516	3491555	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n3491483	NonProperStrand	1	1	-inf
chr4	117558003	117558048	antisense	Gm12841	.	ENSMUSG00000085278	ProperStrand	6	chr4	117555553	117555608	protein_coding	B4galt2	intron	ENSMUSG00000028541	NonProperStrand	18	1	-19.4534
chr14	27155336	27155401	LTR	MT2C_Mm	ERVL	chr14MT2C_Mm27155085	NonProperStrand	2	chr14	27183298	27183342	antisense	4933413J09Rik	.	ENSMUSG00000021874	ProperStrand	66	1	-18.9169
chr5	14925184	14925274	LTR	RMER6C	ERVK	chr5RMER6C14924941	ProperStrand	1	chr5	15643972	15644072	protein_coding	Cacna2d1	intron	ENSMUSG00000040118	ProperStrand	8	1	-inf
chr4	152123756	152123786	LINE	L1Md_F2	L1	chr4L1Md_F2152121552	NonProperStrand	3	chr17	39846452	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-8.0300
chr17	39846453	39846481	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	50817070	50817342	SINE	B1_Mus2	Alu	chr14B1_Mus250817001	ProperStrand	1	1	-inf
chr6	141576407	141576472	LINE	L1Md_F2	L1	chr6L1Md_F2141576179	NonProperStrand	1	chr6	141593069	141593136	protein_coding	Slco1b2	intron	ENSMUSG00000030236	NonProperStrand	24	1	-inf
chr6	90907072	90907171	SINE	B4	B4	chr6B490906959	ProperStrand	2	chr16	31254176	31254266	protein_coding	Ppp1r2	utr3	ENSMUSG00000047714	ProperStrand	18	2	-inf
chr17	39847767	39847796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	78570348	78570367	SINE	B4A	B4	chr11B4A78570238	ProperStrand	1	1	-inf
chr11	70670214	70670369	protein_coding	Rabep1	intron	ENSMUSG00000020817	NonProperStrand	24	chr2	5379306	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.3454
chr2	27469774	27469874	LINE	L1M4c	L1	chr2L1M4c27469784	NonProperStrand	1	chr2	27469880	27469970	SINE	B1_Mus1	Alu	chr2B1_Mus127469859	NonProperStrand	4	1	-inf
chr11	99020262	99020305	LTR	RLTR20A2	ERVK	chr11RLTR20A299019852	ProperStrand	2	chr11	99021244	99021344	SINE	B1_Mus2	Alu	chr11B1_Mus299021273	ProperStrand	1	1	-inf
chr19	8991483	8991573	SINE	B1_Mm	Alu	chr19B1_Mm8991442	NonProperStrand	2	chr19	8991572	8991672	SINE	B4	B4	chr19B48991589	ProperStrand	2	2	-inf
chr5	147477818	147477918	LINE	HAL1-3A_ME	L1	chr5HAL1-3A_ME147477820	ProperStrand	2	chr5	147477659	147477749	Simple_repeat	(GGAGA)n	Simple_repeat	chr5(GGAGA)n147477569	ProperStrand	2	2	-inf
chr5	31061239	31061329	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr5	142886054	142886154	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-6.0245
chr18	34929795	34929813	protein_coding	Fam53c	intron	ENSMUSG00000034300	NonProperStrand	18	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.3849
chr2	29946899	29946951	protein_coding	Zdhhc12	exon	ENSMUSG00000015335	NonProperStrand	1	chr2	29945634	29945696	protein_coding	Pkn3	exon	ENSMUSG00000026785	ProperStrand	5	1	-inf
chr11	75671830	75671998	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	chr1	177168739	177168778	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	1	-9.3932
chr17	39848555	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr10	80265391	80265424	protein_coding-noncoding	Sf3a2	utr5	ENSMUSG00000020211	ProperStrand	2	1	-8.7208
chr7	4486577	4486622	SINE	B1_Mur2	Alu	chr7B1_Mur24486484	ProperStrand	7	chr7	4486660	4486715	SINE	B3	B2	chr7B34486668	ProperStrand	2	2	-inf
chr8	98893611	98893711	LINE	Lx3C	L1	chr8Lx3C98893640	NonProperStrand	1	chr8	98893507	98893597	SINE	MIR	MIR	chr8MIR98893345	ProperStrand	1	1	-inf
chr15	59518218	59518336	LINE	Lx5	L1	chr15Lx559517747	NonProperStrand	1	chr17	39847277	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chrX	74272519	74272609	SINE	B3	B2	chrXB374272477	ProperStrand	15	chr5	115489502	115489602	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-11.9728
chrX	164996996	164997057	protein_coding	Frmpd4	intron	ENSMUSG00000049176	NonProperStrand	76	chr10	128909874	128909925	protein_coding	Olfr788	exon	ENSMUSG00000049217	ProperStrand	5	1	-16.7564
chr11	60773684	60773774	LINE	L1MC5	L1	chr11L1MC560773678	ProperStrand	1	chr11	60773540	60773640	Simple_repeat	(CACCC)n	Simple_repeat	chr11(CACCC)n60773382	NonProperStrand	1	1	-inf
chr11	65144267	65144362	lincRNA	Gm12295	intron	ENSMUSG00000085162	ProperStrand	128	chr6	55079315	55079375	protein_coding	Crhr2	intron	ENSMUSG00000003476	NonProperStrand	33	1	-11.7087
chr12	67667776	67667835	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr6	94003355	94003425	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-5.7191
chr13	107019188	107019243	LINE	L1Md_F2	L1	chr13L1Md_F2107014857	ProperStrand	3	chr8	27213389	27213447	protein_coding	Hook3	intron	ENSMUSG00000037234	ProperStrand	117	1	-16.9598
chr15	49249371	49249461	LINE	L1Md_F2	L1	chr15L1Md_F249245951	ProperStrand	1	chr17	4082111	4082211	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	1	-inf
chr2	130882305	130882405	protein_coding-noncoding	Adam33	utr3	ENSMUSG00000027318	ProperStrand	2	chr2	130882387	130882477	protein_coding	Adam33	utr5	ENSMUSG00000027318	ProperStrand	2	2	-inf
chr17	21934014	21934095	SINE	B3	B2	chr17B321933999	NonProperStrand	1	chr12	78350868	78350927	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr9	59484605	59484655	protein_coding	Parp6	intron	ENSMUSG00000025237	NonProperStrand	38	chr9	59670510	59670594	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-7.1966
chr3	101435910	101436001	Other	RMER1A	Other	chr3RMER1A101434962	NonProperStrand	6	chr13	97190585	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr8	106669080	106669165	LINE	L1M4	L1	chr8L1M4106669087	NonProperStrand	5	chr8	106669481	106669547	LINE	Lx5	L1	chr8Lx5106669400	NonProperStrand	5	1	-inf
chr2	79669291	79669379	LINE	Lx2	L1	chr2Lx279669308	ProperStrand	5	chr2	79669181	79669248	LINE	Lx5	L1	chr2Lx579669120	NonProperStrand	1	1	-inf
chr7	19390462	19391578	LINE	Lx3_Mus	L1	chr7Lx3_Mus19391048	NonProperStrand	4	chr7	19391989	19393251	LINE	Lx3_Mus	L1	chr7Lx3_Mus19391967	ProperStrand	3	3	-inf
chr13	107474945	107475045	LINE	L1Md_T	L1	chr13L1Md_T107469715	NonProperStrand	1	chr13	107475523	107475613	LINE	L1Md_T	L1	chr13L1Md_T107475178	NonProperStrand	1	1	-inf
chr2	4792057	4792078	SINE	B4A	B4	chr2B4A4791919	ProperStrand	1	chr2	4791823	4791903	SINE	ID_B1	B4	chr2ID_B14791765	ProperStrand	1	1	-inf
chr13	49587660	49587750	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	chr2	73551462	73551562	protein_coding	Chn1	intron	ENSMUSG00000056486	ProperStrand	42	1	-13.2362
chr14	18269076	18269930	LTR	ORR1A1	MaLR	chr14ORR1A118268996	NonProperStrand	26	chr17	39847648	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	4	-3.6012
chr17	39847813	39847913	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	62526915	62527005	protein_coding	Itga11	intron	ENSMUSG00000032243	ProperStrand	5	1	-3.2379
chr10	115818365	115818417	protein_coding	Ptprb	intron	ENSMUSG00000020154	ProperStrand	3	chr13	12395870	12396452	protein_coding	Actn2	intron	ENSMUSG00000052374	NonProperStrand	37	1	-19.4598
chr5	115895478	115895578	protein_coding-noncoding	Msi1	utr5	ENSMUSG00000054256	ProperStrand	5	chr5	115895288	115895378	protein_coding	Msi1	intron	ENSMUSG00000054256	ProperStrand	22	4	-inf
chr8	108777701	108777801	lincRNA	Gm17245	intron	ENSMUSG00000067626	NonProperStrand	77	chr14	11899094	11899184	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-7.3760
chr13	19102879	19102897	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	chr11	60468235	60468330	pseudogene	Gm12619	.	ENSMUSG00000084335	NonProperStrand	5	1	-18.6726
chr15	79385945	79386074	LINE	L1_Mus1	L1	chr15L1_Mus179385734	ProperStrand	2	chr5	101888135	101888151	LTR	RLTR12A	ERVK	chr5RLTR12A101888035	NonProperStrand	1	1	-inf
chr17	39842999	39843051	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr11	60297026	60297082	protein_coding	Myo15	intron	ENSMUSG00000042678	NonProperStrand	36	1	-6.3927
chr17	39848099	39848168	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	34826988	34827067	LTR	MMVL30-int	ERV1	chr8MMVL30-int34825870	NonProperStrand	7	1	-5.4467
chr8	3337878	3337978	LTR	RLTR9D	ERVK	chr8RLTR9D3337861	NonProperStrand	1	chr8	3337186	3337276	Other	RMER1A	Other	chr8RMER1A3336556	ProperStrand	1	1	-inf
chr3	62159182	62159228	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.8244
chr12	111802473	111802529	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	ProperStrand	236	chr15	101290478	101290573	protein_coding	Krt81	intron	ENSMUSG00000067615	NonProperStrand	4	1	-14.9676
chr17	39847174	39847253	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	18872589	18872653	protein_coding	Mrpl40	exon	ENSMUSG00000022706	ProperStrand	7	1	-3.6430
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr15	75896856	75901170	protein_coding	Scrib	intron	ENSMUSG00000022568	ProperStrand	50	1	-12.6407
chr17	39844638	39844747	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr15	71637196	71637217	protein_coding	Col22a1	intron	ENSMUSG00000079022	NonProperStrand	6	1	-7.0808
chr5	44094535	44094618	protein_coding	Cc2d2a	intron	ENSMUSG00000039765	NonProperStrand	40	chr15	86194788	86195024	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-9.6084
chr9	67022254	67022305	Simple_repeat	(GA)n	Simple_repeat	chr9(GA)n67022268	NonProperStrand	1	chr9	67022213	67022255	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n67022218	NonProperStrand	1	1	-inf
chr13	8971507	8971527	protein_coding	Gtpbp4	utr3	ENSMUSG00000021149	ProperStrand	25	chr18	84979285	84979390	protein_coding	Gm17266	intron	ENSMUSG00000092153	NonProperStrand	19	1	-16.1262
chr4	130740437	130740527	LTR	RLTR22_Mus	ERVK	chr4RLTR22_Mus130740439	NonProperStrand	2	chr4	130740528	130740628	LTR	RMER12	ERVK	chr4RMER12130740525	NonProperStrand	2	2	-inf
chr10	44458587	44458643	LINE	L1Md_F2	L1	chr10L1Md_F244457880	NonProperStrand	1	chr13	44869602	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr16	57123085	57123115	protein_coding	Tomm70a	intron	ENSMUSG00000022752	ProperStrand	50	chr5	36483924	36484042	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	2	-15.8352
chr11	109011745	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	36484086	36484108	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-3.8424
chr2	73655784	73655815	protein_coding	Atf2	utr3	ENSMUSG00000027104	ProperStrand	38	chr19	4923114	4923155	protein_coding	Dpp3	exon	ENSMUSG00000063904	ProperStrand	50	1	-13.3143
chr9	123461835	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	53009267	53009285	protein_coding	8030423F21Rik	intron	ENSMUSG00000052295	NonProperStrand	2	1	-8.0983
chr8	85084805	85085445	LINE	L1_Rod	L1	chr8L1_Rod85085094	NonProperStrand	9	chr8	85084714	85084804	LTR	RMER19C	ERVK	chr8RMER19C85084460	NonProperStrand	8	7	-inf
chr14	64175797	64175896	LTR	RLTR15	ERVK	chr14RLTR1564175445	NonProperStrand	2	chr2	126792621	126792711	LTR	IAPEz-int	ERVK	chr2IAPEz-int126791092	ProperStrand	5	2	-inf
chr2	30444289	30444389	LTR	MLT2C1	ERVL	chr2MLT2C130444207	NonProperStrand	1	chr4	127029918	127030008	protein_coding	Gjb4	intron	ENSMUSG00000046623	NonProperStrand	20	1	-inf
chrX	102467766	102467856	LTR	RMER17C	ERVK	chrXRMER17C102467522	ProperStrand	1	chrX	102468037	102468137	SINE	B1_Mm	Alu	chrXB1_Mm102468066	NonProperStrand	1	1	-inf
chr11	62551553	62552187	LINE	L1M2	L1	chr11L1M262551810	NonProperStrand	43	chr13	58126197	58126244	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	1	-10.1533
chr3	88488360	88502766	LTR	MER66C	ERV1	chr3MER66C88488349	NonProperStrand	4	chr3	88486827	88486927	SINE	B1_Mus2	Alu	chr3B1_Mus288486821	NonProperStrand	4	4	-inf
chr16	22393614	22393753	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chrX	137078932	137078948	protein_coding	Tsc22d3	intron	ENSMUSG00000031431	ProperStrand	2	1	-16.5449
chr17	39847006	39847069	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	102771333	102771386	protein_coding	Wdr78	intron	ENSMUSG00000035126	NonProperStrand	5	1	-3.1907
chr7	19002607	19002651	LINE	L1_Mus2	L1	chr7L1_Mus219000883	ProperStrand	1	chr7	19002758	19002829	LINE	L1_Mus2	L1	chr7L1_Mus219002686	ProperStrand	3	1	-inf
chr9	40804750	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr8	113644310	113644366	protein_coding	Pdpr	intron	ENSMUSG00000033624	ProperStrand	8	1	-11.5659
chr14	101557092	101557192	LINE	L1_Mus3	L1	chr14L1_Mus3101551608	ProperStrand	2	chr14	101557598	101557688	SINE	B1F2	Alu	chr14B1F2101557578	ProperStrand	1	1	-inf
chr17	39848200	39848249	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	8846878	8846940	protein_coding	Abcb1b	intron	ENSMUSG00000028970	ProperStrand	18	1	-3.5676
chr17	39847657	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	32813807	32813861	SINE	B1_Mur4	Alu	chr19B1_Mur432813758	ProperStrand	1	1	-inf
chr9	118543156	118543192	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	chr1	176800008	176800034	protein_coding	Grem2	intron	ENSMUSG00000050069	ProperStrand	22	1	-11.5137
chr3	135423307	135423392	LINE	Lx4A	L1	chr3Lx4A135423044	NonProperStrand	1	chr3	135411175	135411222	LINE	Lx8	L1	chr3Lx8135410501	ProperStrand	1	1	-inf
chr18	4421007	4421043	LTR	MTE2b-int	MaLR	chr18MTE2b-int4420329	ProperStrand	1	chr18	4421190	4421279	LTR	MTE2b	MaLR	chr18MTE2b4421044	ProperStrand	1	1	-inf
chr1	38032554	38032644	LINE	Lx9	L1	chr1Lx938031995	NonProperStrand	3	chr1	38032658	38032758	SINE	B2_Mm2	B2	chr1B2_Mm238032655	ProperStrand	1	1	-inf
chr6	91685323	91685351	protein_coding	Slc6a6	intron	ENSMUSG00000030096	ProperStrand	99	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-8.1373
chr13	86044985	86045069	LINE	L1MA4	L1	chr13L1MA486044993	NonProperStrand	1	chr2	5379270	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr5	51290677	51290767	LINE	L1_Mur1	L1	chr5L1_Mur151290701	NonProperStrand	1	chr5	51290956	51291056	LINE	Lx2	L1	chr5Lx251290880	ProperStrand	1	1	-inf
chr10	40258503	40258622	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr12	25057414	25057431	LTR	RMER16-int	ERVK	chr12RMER16-int25057131	ProperStrand	7	1	-9.7315
chr11	72185905	72185930	Simple_repeat	(TC)n	Simple_repeat	chr11(TC)n72185822	NonProperStrand	1	chr17	74602666	74602694	protein_coding	Memo1	intron	ENSMUSG00000058704	NonProperStrand	64	1	-inf
chr6	135191189	135191289	protein_coding	8430419L09Rik	intron	ENSMUSG00000030207	ProperStrand	4	chr8	125392516	125392606	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-12.5921
chr6	122320959	122321900	LTR	RLTR12B	ERVK	chr6RLTR12B122320697	ProperStrand	10	chr6	122320047	122320960	SINE	RSINE1	B4	chr6RSINE1122320145	NonProperStrand	8	6	-23.0413
chr4	13604692	13604710	LINE	L1Md_F	L1	chr4L1Md_F13603253	ProperStrand	5	chr17	66374796	66374907	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	1	-14.5175
chr4	125714560	125714650	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	chr14	66861710	66861810	protein_coding	Ptk2b	intron	ENSMUSG00000059456	ProperStrand	38	2	-21.5336
chr10	3452243	3452261	protein_coding	Oprm1	intron	ENSMUSG00000000766	ProperStrand	6	chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	1	-16.5605
chr18	24789537	24789581	protein_coding	Elp2	intron	ENSMUSG00000024271	ProperStrand	44	chr7	142174764	142174780	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-10.7171
chrX	99602968	99603068	protein_coding-noncoding	Hdac8	utr3	ENSMUSG00000067567	NonProperStrand	1	chrX	99602747	99602837	protein_coding	Hdac8	intron	ENSMUSG00000067567	NonProperStrand	1	1	-inf
chr14	61364618	61364645	protein_coding	Spata13	intron	ENSMUSG00000021990	NonProperStrand	37	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.5346
chr11	3396390	3396456	protein_coding	Inpp5j	intron	ENSMUSG00000034570	ProperStrand	10	chr5	142886389	142886465	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-11.9367
chr12	59040478	59040523	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr16	14403544	14403655	protein_coding-noncoding	Abcc1	utr5	ENSMUSG00000023088	ProperStrand	5	1	-15.2134
chr7	28042837	28042888	lincRNA	Gm15567	intron	ENSMUSG00000084974	ProperStrand	3	chr7	28042975	28047046	protein_coding-noncoding	Numbl	utr5	ENSMUSG00000063160	NonProperStrand	8	1	-20.8155
chr12	36627595	36627695	LTR	RLTR20A	ERVK	chr12RLTR20A36627591	ProperStrand	1	chr12	36627364	36627454	SINE	B4A	B4	chr12B4A36627302	ProperStrand	1	1	-inf
chr8	88706180	88706270	Other	RMER1B	Other	chr8RMER1B88705673	NonProperStrand	1	chr8	88706335	88706435	SINE	B4	B4	chr8B488706326	NonProperStrand	1	1	-inf
chr17	39843029	39843078	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	43801942	43801959	protein_coding	Slc25a27	intron	ENSMUSG00000023912	ProperStrand	1	1	-inf
chr11	5147850	5147946	protein_coding	Kremen1	intron	ENSMUSG00000020393	ProperStrand	46	chr13	97190574	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.6412
chr10	75935887	75935927	protein_coding	Mcm3ap	intron	ENSMUSG00000001150	ProperStrand	37	chr5	92053631	92053710	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-10.3923
chr4	139442754	139443420	LTR	ORR1D1	MaLR	chr4ORR1D1139442740	ProperStrand	3	chr4	139441294	139442722	SINE	B4	B4	chr4B4139442559	NonProperStrand	1	1	-inf
chr12	13330635	13330743	protein_coding	Nbas	intron	ENSMUSG00000020576	ProperStrand	45	chr9	110281288	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.1386
chr10	51234481	51234499	LINE	Lx2B	L1	chr10Lx2B51233822	NonProperStrand	5	chr1	36691600	36692260	protein_coding	Fam178b	intron	ENSMUSG00000046337	NonProperStrand	23	1	-19.0933
chr17	39846436	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	43751861	43751881	LTR	MLT1D	MaLR	chr4MLT1D43751743	ProperStrand	3	1	-4.3017
chr17	39848128	39848165	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	30073496	30073547	protein_coding	Dnajb6	intron	ENSMUSG00000029131	NonProperStrand	15	1	-3.9151
chr17	39847513	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	54113136	54113229	protein_coding	Sult1c1	intron	ENSMUSG00000023943	NonProperStrand	3	1	-4.3512
chr17	39847100	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	82963289	82963308	protein_coding	Poldip3	intron	ENSMUSG00000041815	NonProperStrand	3	1	-5.4882
chr2	37391577	37391677	protein_coding	Strbp	intron	ENSMUSG00000026915	ProperStrand	35	chr9	68766600	68766691	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-10.6754
chr5	115561197	115561350	protein_coding	Acads	intron	ENSMUSG00000029545	NonProperStrand	165	chr17	33817713	33817785	protein_coding	Hnrnpm	intron	ENSMUSG00000059208	NonProperStrand	92	1	-9.1355
chr14	86656341	86656401	LINE	L1MCa	L1	chr14L1MCa86656276	NonProperStrand	1	chr4	109948633	109948678	protein_coding	Elavl4	intron	ENSMUSG00000028546	NonProperStrand	51	1	-inf
chr13	55639851	55645392	LTR	MTEa	MaLR	chr13MTEa55639850	ProperStrand	3	chr17	39847359	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr9	123462087	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	34606607	34606704	protein_coding	Btnl4	exon	ENSMUSG00000058435	NonProperStrand	19	1	-3.1531
chr1	63165024	63166341	lincRNA	Gm11602	intron	ENSMUSG00000084799	NonProperStrand	13	chr4	32895690	32895727	protein_coding	Ankrd6	exon	ENSMUSG00000040183	ProperStrand	144	1	-13.3825
chr12	69213228	69213310	LINE	Lx8	L1	chr12Lx869213216	NonProperStrand	2	chr17	39846462	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr1	136364891	136364967	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr8	125558220	125558243	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-6.4179
chrX	20688576	20688666	LINE	Lx3B	L1	chrXLx3B20687315	NonProperStrand	8	chrX	20688787	20693404	protein_coding	Ssxa1	intron	ENSMUSG00000062814	ProperStrand	24	1	-18.1736
chrX	136171643	136171698	protein_coding	Rnf128	intron	ENSMUSG00000031438	NonProperStrand	7	chr3	103771696	103771765	pseudogene	A130049A11Rik	.	ENSMUSG00000089998	ProperStrand	1	1	-inf
chr5	33527914	33528450	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm33527939	NonProperStrand	14	chr5	33527475	33527954	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int33527476	NonProperStrand	42	5	-inf
chr2	100836019	100836119	LINE	L1Md_F	L1	chr2L1Md_F100834442	ProperStrand	1	chr2	100836368	100836458	LINE	L1Md_F	L1	chr2L1Md_F100836302	ProperStrand	1	1	-inf
chr1	151912514	151912534	SINE	B1_Mus1	Alu	chr1B1_Mus1151912492	ProperStrand	4	chr9	123461977	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr5	136502465	136502579	protein_coding-noncoding	Dtx2	utr5	ENSMUSG00000004947	NonProperStrand	16	chr5	136502356	136502470	protein_coding	Dtx2	exon	ENSMUSG00000004947	NonProperStrand	47	2	-inf
chr17	33338498	33338576	Low_complexity	GA-rich	Low_complexity	chr17GA-rich33338495	NonProperStrand	1	chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	1	-inf
chr5	105799265	105799333	LINE	L1Md_F2	L1	chr5L1Md_F2105797620	NonProperStrand	27	chr5	105756701	105756779	protein_coding	Gbp11	intron	ENSMUSG00000092021	NonProperStrand	63	1	-13.5408
chr4	3835508	3835592	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr7	109521341	109521408	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-9.8412
chr15	36598214	36598302	LINE	L1MEg	L1	chr15L1MEg36598175	NonProperStrand	3	chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-7.3534
chr17	39845507	39845624	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	7455696	7455714	protein_coding	Mmp3	utr3	ENSMUSG00000043613	ProperStrand	3	1	-8.2800
chr9	97015253	97015276	SINE	ID_B1	B4	chr9ID_B197015067	ProperStrand	1	chr6	137764327	137764446	protein_coding	Dera	intron	ENSMUSG00000030225	ProperStrand	23	1	-inf
chr13	97190590	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr5	142904397	142905328	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	2	-3.2352
chr1	72197370	72197423	LTR	MTD	MaLR	chr1MTD72197073	ProperStrand	1	chr1	72197464	72197507	LTR	RMER20B	ERVK	chr1RMER20B72197425	ProperStrand	1	1	-inf
chr1	74401301	74401362	SINE	B2_Mm2	B2	chr1B2_Mm274401309	NonProperStrand	1	chr1	74399830	74399902	protein_coding	Pnkd	utr3	ENSMUSG00000026179	ProperStrand	15	1	-inf
chr10	20237676	20237764	processed_transcript	4930403O15Rik	.	ENSMUSG00000068638	NonProperStrand	4	chr7	130491233	130491287	protein_coding	Arhgap17	intron	ENSMUSG00000030766	ProperStrand	89	1	-16.9275
chr17	39847778	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	15132671	15132688	protein_coding	Myom2	exon	ENSMUSG00000031461	NonProperStrand	2	1	-5.4040
chr13	66262442	66262519	Unknown	MurSatRep1	Unknown	chr13MurSatRep166262153	NonProperStrand	1	chr7	116517336	116517403	protein_coding	Stk33	intron	ENSMUSG00000031027	NonProperStrand	13	1	-inf
chr3	6352340	6352430	LINE	Lx3A	L1	chr3Lx3A6351927	NonProperStrand	1	chr3	6352527	6352627	LTR	RMER6C	ERVK	chr3RMER6C6352513	NonProperStrand	1	1	-inf
chr1	89583042	89583149	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	chr2	127604289	127604307	protein_coding	Nphp1	intron	ENSMUSG00000027378	ProperStrand	10	1	-11.7003
chr13	23738921	23738947	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int23738136	NonProperStrand	71	chr7	97541209	97541282	protein_coding	Sytl2	intron	ENSMUSG00000030616	ProperStrand	31	1	-13.0203
chr1	191327670	191327770	LINE	L1MA7	L1	chr1L1MA7191327329	NonProperStrand	1	chr1	191327930	191328020	SINE	B2_Mm2	B2	chr1B2_Mm2191327891	NonProperStrand	1	1	-inf
chr17	39846453	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	18042333	18042353	protein_coding	Cyp7b1	intron	ENSMUSG00000039519	NonProperStrand	5	1	-3.1907
chr2	174427408	174427474	SINE	ID_B1	B4	chr2ID_B1174427403	NonProperStrand	1	chr10	59351277	59351333	protein_coding	Dnajb12	intron	ENSMUSG00000020109	ProperStrand	15	1	-inf
chr17	39846455	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	84401147	84401203	SINE	MIRb	MIR	chr11MIRb84401129	NonProperStrand	1	1	-inf
chr9	44608722	44608782	protein_coding	Ttc36	intron	ENSMUSG00000039438	NonProperStrand	2	chr4	106578306	106585835	protein_coding	Ssbp3	utr5	ENSMUSG00000061887	ProperStrand	60	1	-19.2365
chr8	61763214	61763232	LINE	Lx8	L1	chr8Lx861762759	ProperStrand	3	chr16	4951644	4951719	protein_coding	Anks3	intron	ENSMUSG00000022515	ProperStrand	31	1	-20.0043
chr15	59520380	59520429	LTR	MTB_Mm	MaLR	chr15MTB_Mm59520304	NonProperStrand	4	chr9	8628281	8628320	protein_coding	Trpc6	intron	ENSMUSG00000031997	NonProperStrand	7	2	-inf
chr17	39843018	39843065	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	mmu-miR-5099	4	20	miRNA	mmu-miR-5099	.	mmu-miR-5099	ProperStrand	3	1	-11.7035
chrX	87238369	87238407	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr5	146261258	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-8.8320
chr17	39847611	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	174464039	174464074	SINE	RSINE1	B4	chr2RSINE1174463917	ProperStrand	1	1	-inf
chr9	97075561	97075666	LINE	L1MB7	L1	chr9L1MB797075521	NonProperStrand	2	chr17	39846521	39846554	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr10	52417780	52417843	protein_coding	Slc35f1	intron	ENSMUSG00000038602	ProperStrand	51	chr9	118674951	118674988	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.2915
chr6	60256796	60256813	LINE	L1_Mus4	L1	chr6L1_Mus460256675	NonProperStrand	3	chr17	39846733	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr16	23111681	23111738	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	123	chr14	32337478	32337522	protein_coding	Colq	utr3	ENSMUSG00000057606	NonProperStrand	51	1	-10.9083
chr17	39847284	39847342	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	101590529	101590597	LTR	RMER5	ERV1	chr3RMER5101590429	NonProperStrand	7	1	-3.6430
chr11	115951069	115951169	SINE	B1_Mur1	Alu	chr11B1_Mur1115951098	NonProperStrand	2	chr11	115950982	115951073	SINE	B1_Mur3	Alu	chr11B1_Mur3115950913	NonProperStrand	1	1	-inf
chr10	81367646	81368143	Unknown	MurSatRep1	Unknown	chr10MurSatRep181366289	ProperStrand	16	chr10	81368138	81368228	protein_coding	Zfp781	exon	ENSMUSG00000062540	ProperStrand	33	5	-inf
chr13	23436339	23436415	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	chr12	79388071	79388129	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-8.9319
chr5	146261301	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr7	13029100	13029214	SINE	RSINE1	B4	chr7RSINE113029041	ProperStrand	3	1	-14.2394
chr17	39847348	39847904	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	128083314	128088328	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	114	16	-6.4450
chr14	19278161	19278207	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr17	39842997	39843053	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	1	-4.9273
chr17	39843428	39843470	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr17	12317643	12317751	protein_coding	Agpat4	intron	ENSMUSG00000023827	NonProperStrand	15	1	-5.1667
chr17	39847438	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	79292499	79292518	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	11	-6.4726
chr2	173033134	173033214	protein_coding	Zbp1	intron	ENSMUSG00000027514	NonProperStrand	25	chr6	43336250	43336320	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	1	-14.6700
chr6	142501387	142501423	LTR	MTD	MaLR	chr6MTD142501273	ProperStrand	8	chr4	142168435	142168461	SINE	MIRc	MIR	chr4MIRc142168375	ProperStrand	8	1	-19.9835
chr8	70789010	70789131	LINE	Lx5	L1	chr8Lx570788856	NonProperStrand	1	chr17	39846429	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	89545236	89545254	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	18	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-10.2836
chr4	82425826	82426005	LINE	L1VL4	L1	chr4L1VL482425567	NonProperStrand	3	chr9	123461957	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-12.1476
chr17	39847443	39847949	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	105238156	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	6	-3.7593
chr13	6589449	6589555	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr13	98840323	98840345	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	1	-6.2691
chr8	114737027	114737119	LINE	L1_Mur2	L1	chr8L1_Mur2114736712	ProperStrand	1	chr11	69667932	69667976	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-inf
chr17	65603241	65603341	LINE	Lx	L1	chr17Lx65603109	NonProperStrand	1	chr17	65603454	65603544	SINE	B3	B2	chr17B365603404	NonProperStrand	1	1	-inf
chr6	76227089	76227179	LINE	Lx4A	L1	chr6Lx4A76227063	ProperStrand	1	chr6	76227603	76227703	LINE	Lx5	L1	chr6Lx576227281	ProperStrand	1	1	-inf
chr1	59654996	59655051	protein_coding	Gm973	intron	ENSMUSG00000047361	NonProperStrand	30	chr9	15315522	15315587	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-11.8555
chr16	8490779	8490879	SINE	B1_Mur3	Alu	chr16B1_Mur38490790	ProperStrand	2	chr16	8490693	8490783	protein_coding	Mettl22	utr3	ENSMUSG00000039345	ProperStrand	14	2	-inf
chr11	97680899	97680948	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	chr10	40112874	40112933	protein_coding	Cdk19	intron	ENSMUSG00000038481	NonProperStrand	22	1	-12.5662
chr15	78968437	78968456	protein_coding	1700088E04Rik	intron	ENSMUSG00000033029	NonProperStrand	14	chr2	75698802	75698835	protein_coding	Agps	intron	ENSMUSG00000042410	NonProperStrand	122	1	-13.5611
chr2	49893834	49893934	SINE	B1_Mus1	Alu	chr2B1_Mus149893793	ProperStrand	1	chr2	49753943	49754033	protein_coding	Lypd6b	intron	ENSMUSG00000026765	ProperStrand	54	1	-inf
chr11	35633467	35633567	protein_coding-noncoding	Rars	utr3	ENSMUSG00000018848	ProperStrand	1	chr11	35633771	35633861	protein_coding	Rars	intron	ENSMUSG00000018848	ProperStrand	1	1	-inf
chr11	116757702	116757747	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr6	33489745	33489785	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-7.4312
chr17	25980391	25980458	protein_coding	Rhot2	intron	ENSMUSG00000025733	ProperStrand	13	chr17	25984049	25984126	protein_coding	Wdr90	intron	ENSMUSG00000073434	ProperStrand	7	2	-inf
chr9	123462128	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	97267676	97280229	protein_coding	Arhgap23	intron	ENSMUSG00000049807	NonProperStrand	18	1	-3.2529
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr7	98963245	98963388	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	2	-11.6224
chr11	96789255	96789345	lincRNA	D030028A08Rik	intron	ENSMUSG00000078700	ProperStrand	59	chr11	96789415	96789517	protein_coding-noncoding	Prr15l	utr5	ENSMUSG00000047040	ProperStrand	5	5	-inf
chr11	6049120	6049170	protein_coding	Nudcd3	intron	ENSMUSG00000053838	ProperStrand	33	chr12	21401345	21401437	protein_coding	Ywhaq	intron	ENSMUSG00000076432	ProperStrand	53	1	-13.4809
chr6	37418920	37419020	LINE	Lx9	L1	chr6Lx937418427	NonProperStrand	2	chr6	37419056	37419146	LTR	ORR1B1	MaLR	chr6ORR1B137419018	NonProperStrand	1	1	-inf
chr1	72833064	72833095	LINE	L1M4	L1	chr1L1M472832970	NonProperStrand	1	chr17	39847214	39847255	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	69669634	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr8	101986135	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-9.0506
chr4	53542428	53542494	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	chr15	83149683	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-9.5671
chr18	6094236	6094326	protein_coding	Arhgap12	intron	ENSMUSG00000041225	NonProperStrand	3	chr18	6118326	6118426	protein_coding	Arhgap12	intron	ENSMUSG00000041225	ProperStrand	63	1	-18.3494
chr13	21780419	21780494	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr2	119771287	119771354	protein_coding	Mga	intron	ENSMUSG00000033943	NonProperStrand	66	2	-19.1813
chr18	56739959	56740013	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	96	chr2	29872575	29872660	protein_coding	Spna2	intron	ENSMUSG00000057738	ProperStrand	19	2	-20.1423
chrX	15879991	15880081	LINE	L1Md_F2	L1	chrXL1Md_F215879712	NonProperStrand	1	chrX	15880219	15880319	LINE	L1Md_T	L1	chrXL1Md_T15880199	ProperStrand	1	1	-inf
chr8	71476832	71476882	LINE	L1MA6	L1	chr8L1MA671476785	NonProperStrand	1	chr17	39846389	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	106474451	106474724	LINE	L1MB8	L1	chr9L1MB8106474409	NonProperStrand	2	chr19	40914994	40915011	protein_coding	Ccnj	intron	ENSMUSG00000025010	ProperStrand	8	2	-inf
chr19	8724592	8724620	SINE	B2_Mm2	B2	chr19B2_Mm28724598	NonProperStrand	3	chr9	64175482	64175523	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-15.3187
chr14	103158285	103158338	LINE	L1Md_T	L1	chr14L1Md_T103155586	NonProperStrand	2	chr13	107725385	107725442	protein_coding	Ipo11	intron	ENSMUSG00000042590	ProperStrand	3	1	-20.8297
chr2	92934464	92934486	lincRNA	Gm13802	intron	ENSMUSG00000087559	ProperStrand	1	chr9	123462128	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	80856955	80857027	protein_coding-noncoding	Mkl1	utr3	ENSMUSG00000042292	NonProperStrand	2	chr15	37968013	37968053	protein_coding	Ubr5	intron	ENSMUSG00000037487	ProperStrand	87	1	-18.6326
chr6	39401153	39401214	SINE	B2_Mm2	B2	chr6B2_Mm239401117	NonProperStrand	2	chr6	39401045	39401083	Simple_repeat	(A)n	Simple_repeat	chr6(A)n39401054	NonProperStrand	1	1	-inf
chr5	110432675	110432775	protein_coding-noncoding	Zfp932	utr5	ENSMUSG00000066613	NonProperStrand	3	chr5	110432779	110432871	protein_coding	Zfp932	intron	ENSMUSG00000066613	NonProperStrand	61	2	-20.9125
chr15	82889828	82889919	LINE	L1MEd	L1	chr15L1MEd82889823	NonProperStrand	1	chr9	123461905	123462005	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr19	6058451	6058514	protein_coding	Fau	exon	ENSMUSG00000038274	ProperStrand	58	chr9	44866555	44866651	protein_coding	Mpzl3	intron	ENSMUSG00000070305	NonProperStrand	37	1	-13.0677
chr19	5800060	5800170	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr3	27106614	27106649	protein_coding	Nceh1	intron	ENSMUSG00000027698	NonProperStrand	62	1	-4.3766
chr17	33220638	33220690	LINE	Lx	L1	chr17Lx33220643	ProperStrand	1	chr17	33219318	33219367	LINE	Lx6	L1	chr17Lx633219147	ProperStrand	1	1	-inf
chr18	65089787	65089863	protein_coding	Nedd4l	intron	ENSMUSG00000024589	ProperStrand	160	chr9	72736726	72736881	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-6.7011
chr17	39847636	39847734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	120671984	120672025	protein_coding-noncoding	Cecr2	utr5	ENSMUSG00000071226	ProperStrand	4	1	-3.7035
chr13	113337007	113337066	protein_coding	Il31ra	intron	ENSMUSG00000050377	NonProperStrand	14	chr1	37892990	37893954	protein_coding	Tsga10	intron	ENSMUSG00000060771	NonProperStrand	14	1	-17.7319
chr17	39847105	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	142170529	142170613	SINE	RSINE1	B4	chr4RSINE1142170548	NonProperStrand	4	1	-4.8204
chr2	34468614	34468672	protein_coding	Mapkap1	intron	ENSMUSG00000038696	ProperStrand	60	chr2	76710858	76710946	protein_coding	Ttn	exon	ENSMUSG00000051747	ProperStrand	21	1	-14.1555
chr17	39847539	39847603	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	126066044	126066062	protein_coding	Iqck	intron	ENSMUSG00000073856	ProperStrand	3	1	-4.3512
chr5	61355455	61355555	LINE	L1Md_F2	L1	chr5L1Md_F261349372	ProperStrand	1	chr5	61355567	61355657	LTR	ORR1A3-int	MaLR	chr5ORR1A3-int61355564	ProperStrand	1	1	-inf
chr18	65587864	65587964	LTR	MTD	MaLR	chr18MTD65587677	ProperStrand	3	chr18	65587493	65587583	SINE	B2_Mm2	B2	chr18B2_Mm265587481	ProperStrand	4	1	-inf
chr16	27039784	27039874	LTR	RLTR25B	ERVK	chr16RLTR25B27039733	ProperStrand	1	chr16	27039625	27039725	LTR	RMER17D2	ERVK	chr16RMER17D227039266	NonProperStrand	1	1	-inf
chr1	151960569	151960669	SINE	B3	B2	chr1B3151960562	NonProperStrand	1	chr1	151936817	151936907	lincRNA	7530420F21Rik	intron	ENSMUSG00000084952	ProperStrand	7	1	-inf
chr18	64898261	64898351	LINE	Lx8	L1	chr18Lx864898285	ProperStrand	1	chr18	64898138	64898238	SINE	B1_Mus1	Alu	chr18B1_Mus164898118	NonProperStrand	1	1	-inf
chr14	43684068	43684158	LINE	L1Md_F2	L1	chr14L1Md_F243684073	ProperStrand	1	chr14	43683924	43684024	LINE	Lx2	L1	chr14Lx243682036	ProperStrand	1	1	-inf
chr17	17608599	17608689	LINE	L1Md_F2	L1	chr17L1Md_F217608590	ProperStrand	1	chr17	8287625	8287725	protein_coding	Gm1604A	intron	ENSMUSG00000052126	NonProperStrand	15	1	-inf
chr17	39848245	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	23580101	23580150	pseudogene	Vmn2r-ps134	.	ENSMUSG00000093653	ProperStrand	12	1	-4.3503
chr3	38455461	38455543	LTR	MTD	MaLR	chr3MTD38455386	ProperStrand	3	chr9	123462036	123462076	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr4	57950012	57950112	SINE	B1_Mus1	Alu	chr4B1_Mus157949980	NonProperStrand	3	chr4	57950104	57950194	SINE	B3	B2	chr4B357950120	ProperStrand	3	3	-inf
chr4	155155117	155155207	lincRNA	Gm13644	intron	ENSMUSG00000085119	NonProperStrand	7	chr11	113447756	113447785	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-13.4041
chr16	80998835	80998923	LINE	L1Md_A	L1	chr16L1Md_A80995784	ProperStrand	1	chr1	74596427	74596470	protein_coding	Plcd4	intron	ENSMUSG00000026173	ProperStrand	1	1	-inf
chr8	101028951	101029041	LINE	L1M2	L1	chr8L1M2101028968	NonProperStrand	1	chr8	101028726	101028826	LINE	Lx7	L1	chr8Lx7101028362	ProperStrand	1	1	-inf
chr18	21208464	21208554	LTR	RMER19B	ERVK	chr18RMER19B21208455	NonProperStrand	2	chr18	21208368	21208469	SINE	B2_Mm2	B2	chr18B2_Mm221208277	ProperStrand	2	2	-inf
chr6	124911650	124911738	protein_coding	Cops7a	intron	ENSMUSG00000030127	ProperStrand	17	chr18	34941934	34941970	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-13.8846
chr10	128058996	128059065	LTR	MTEa	MaLR	chr10MTEa128058914	ProperStrand	2	chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr2	36167961	36168051	LINE	L1Md_F2	L1	chr2L1Md_F236166814	NonProperStrand	4	chr2	41838046	41838146	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-18.0173
chr14	99099588	99099663	SINE	MIRb	MIR	chr14MIRb99099516	NonProperStrand	7	chr9	123462122	123462148	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr1	33618079	33618132	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	chr2	10446912	10446989	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-9.3852
chr16	57469425	57469518	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr18	7503347	7503406	protein_coding	Mpp7	intron	ENSMUSG00000057440	ProperStrand	99	1	-7.5160
chr2	22744850	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr19	44304956	44305012	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	1	-4.6742
chr9	123462095	123462138	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	97695481	97695514	protein_coding	Gcnt4	intron	ENSMUSG00000091387	ProperStrand	3	1	-7.0114
chr9	5613266	5613366	LTR	IAPEy-int	ERVK	chr9IAPEy-int5612628	ProperStrand	1	chr6	17803187	17803277	protein_coding	St7	intron	ENSMUSG00000029534	NonProperStrand	11	1	-inf
chr19	3607854	3607908	protein_coding	Lrp5	intron	ENSMUSG00000024913	ProperStrand	159	chr2	121420671	121420715	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	1	-9.5146
chr15	57964093	57964132	protein_coding	Atad2	intron	ENSMUSG00000022360	NonProperStrand	53	chr1	4830202	4830251	protein_coding	Lypla1	intron	ENSMUSG00000025903	ProperStrand	29	2	-19.4921
chr18	37890953	37891031	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	chr18	65190036	65190092	protein_coding	Nedd4l	intron	ENSMUSG00000024589	ProperStrand	160	1	-8.8036
chr2	11949893	11949993	LINE	L1MB7	L1	chr2L1MB711949497	ProperStrand	1	chr2	11950205	11950295	LINE	L1MB7	L1	chr2L1MB711950121	ProperStrand	1	1	-inf
chr17	39846736	39846760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	173244284	173244421	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n173244312	NonProperStrand	2	2	-inf
chr17	39843764	39843806	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr6	49382226	49382259	protein_coding	Stk31	intron	ENSMUSG00000023403	ProperStrand	9	1	-6.6743
chr17	47141889	47230309	SINE	B3	B2	chr17B347141962	ProperStrand	3	chr17	47141360	47141869	protein_coding	Ubr2	intron	ENSMUSG00000023977	NonProperStrand	8	3	-inf
chr9	56368416	56368506	LINE	L1MC4	L1	chr9L1MC456368424	NonProperStrand	1	chr9	56368302	56368402	Simple_repeat	(CATA)n	Simple_repeat	chr9(CATA)n56368221	NonProperStrand	1	1	-inf
chr17	39847511	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	26959099	26959119	LTR	RLTR4_MM-int	ERV1	chr1RLTR4_MM-int26958608	NonProperStrand	1	1	-inf
chr10	40258480	40258565	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr3	14565747	14565763	protein_coding	Lrrcc1	exon	ENSMUSG00000027550	ProperStrand	7	1	-9.7315
chr11	107068329	107072712	SINE	ID_B1	B4	chr11ID_B1107068330	NonProperStrand	2	chr11	107072756	107072846	protein_coding	Pitpnc1	utr3	ENSMUSG00000040430	ProperStrand	310	2	-inf
chr2	150197630	150197726	LINE	L1Md_F3	L1	chr2L1Md_F3150196086	NonProperStrand	9	chr10	75646543	75646589	protein_coding	Slc5a4a	intron	ENSMUSG00000020229	NonProperStrand	35	1	-17.0178
chr6	92963752	92963829	lincRNA	9530026P05Rik	intron	ENSMUSG00000087573	ProperStrand	66	chr13	113985780	113985825	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-8.2961
chrX	12086779	12086852	SINE	B4	B4	chrXB412086709	NonProperStrand	1	chr3	152409143	152409226	protein_coding	Pigk	intron	ENSMUSG00000039047	ProperStrand	95	1	-inf
chr8	72418127	72418217	protein_coding	Ndufa13	exon	ENSMUSG00000036199	ProperStrand	28	chr8	71592244	71592344	protein_coding	Slc18a1	intron	ENSMUSG00000036330	NonProperStrand	65	2	-inf
chrX	53686762	53686778	LINE	Lx9	L1	chrXLx953686727	ProperStrand	1	chr13	44869929	44870017	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr9	118674949	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr2	5379230	5530238	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	19	-20.6570
chr14	91234125	91234225	LINE	Lx6	L1	chr14Lx691234108	NonProperStrand	1	chr14	91233992	91234082	LTR	ORR1A4	MaLR	chr14ORR1A491233809	NonProperStrand	1	1	-inf
chr13	74763453	74763556	LINE	L1Md_F2	L1	chr13L1Md_F274762100	ProperStrand	1	chr3	108554679	108554715	protein_coding	Aknad1	exon	ENSMUSG00000049565	NonProperStrand	220	1	-inf
chr9	61918921	61919662	DNA	BLACKJACK	AcHobo	chr9BLACKJACK61919485	NonProperStrand	2	chr9	61919671	61919942	SINE	B3A	B2	chr9B3A61919811	ProperStrand	1	1	-inf
chr17	39847460	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	23684201	23684276	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	NonProperStrand	15	3	-4.1882
chr13	84060212	84060312	LINE	L1_Mur3	L1	chr13L1_Mur384060110	NonProperStrand	1	chr13	87118934	87119024	LINE	L1_Mus4	L1	chr13L1_Mus487118759	ProperStrand	1	1	-inf
chr9	19657849	19657939	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chr15	62071184	62071284	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	2	-12.6418
chr3	79597040	79597097	SINE	B3	B2	chr3B379596970	ProperStrand	1	chr2	5379274	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr3	37478197	37478312	SINE	ID_B1	B4	chr3ID_B137478177	NonProperStrand	1	chr3	37477476	37477514	protein_coding	Spata5	intron	ENSMUSG00000027722	ProperStrand	28	1	-inf
chr17	39846647	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	23559387	23559454	protein_coding	Pex13	intron	ENSMUSG00000020283	ProperStrand	2	1	-5.3533
chr17	39847183	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	20944860	20944959	LTR	RLTR13D4	ERVK	chr17RLTR13D420944786	ProperStrand	1	1	-inf
chr9	37571983	37572073	LINE	L1Md_F3	L1	chr9L1Md_F337571870	ProperStrand	1	chr9	37571779	37571879	LINE	L1VL4	L1	chr9L1VL437570065	NonProperStrand	1	1	-inf
chr10	40258543	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr15	79640708	79640725	protein_coding	Cbx6	intron	ENSMUSG00000089715	ProperStrand	3	1	-11.6731
chr17	4082155	4082274	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr6	67007886	67009329	lincRNA	E230016M11Rik	intron	ENSMUSG00000087231	NonProperStrand	42	2	-13.3507
chr13	44869602	44869710	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr16	23111390	23111433	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	16	1	-7.1067
chr9	8269530	8269620	LINE	L1_Mus3	L1	chr9L1_Mus38267967	ProperStrand	2	chr9	24376203	24376303	protein_coding	Dpy19l2	intron	ENSMUSG00000085576	NonProperStrand	3	1	-20.8297
chr11	52270440	52270471	SINE	ID_B1	B4	chr11ID_B152270395	NonProperStrand	6	chr16	34549626	34549647	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-13.9022
chr12	31322264	31322355	LTR	MT2A	ERVL	chr12MT2A31322076	NonProperStrand	1	chr12	31321957	31322057	LTR	MTEb	MaLR	chr12MTEb31321799	ProperStrand	1	1	-inf
chr17	39848202	39848351	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	14565749	14565765	protein_coding	Lrrcc1	exon	ENSMUSG00000027550	ProperStrand	7	1	-5.4467
chr11	101209128	101209179	LTR	ORR1D2	MaLR	chr11ORR1D2101208858	NonProperStrand	1	chr17	39847803	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	146464776	146464793	protein_coding	Prkacb	intron	ENSMUSG00000005034	NonProperStrand	52	chr17	56613653	56613929	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	1	-10.2929
chr7	114110292	114110315	LINE	L1_Mus4	L1	chr7L1_Mus4114108626	NonProperStrand	2	chr7	114111341	114111458	Simple_repeat	(TAGA)n	Simple_repeat	chr7(TAGA)n114111288	NonProperStrand	1	1	-inf
chr13	85189427	85189475	LINE	Lx9	L1	chr13Lx985189377	NonProperStrand	1	chr17	39847742	39847800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	27266627	27268801	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int27266708	ProperStrand	3	chr7	27265002	27266728	LTR	RLTR9F	ERVK	chr7RLTR9F27266232	ProperStrand	3	3	-inf
chrX	137094628	137094687	protein_coding	Tsc22d3	intron	ENSMUSG00000031431	NonProperStrand	5	chr5	17776747	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-15.2749
chr17	39846726	39846784	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	128624087	128624152	protein_coding	Olfr773	exon	ENSMUSG00000091717	ProperStrand	1	1	-inf
chr8	115157600	115157686	protein_coding	Cntnap4	intron	ENSMUSG00000031772	ProperStrand	104	chr11	61829435	61830590	protein_coding	Specc1	intron	ENSMUSG00000042331	ProperStrand	27	1	-12.5329
chr8	72489484	72489518	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	chr9	59670484	59670543	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-4.4211
chr6	115672696	115672723	Other	RMER1B	Other	chr6RMER1B115672246	ProperStrand	1	chr4	53860751	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-inf
chr16	23108759	23108787	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.7664
chr11	83271494	83271572	protein_coding	Mmp28	intron	ENSMUSG00000020682	NonProperStrand	10	chr6	47533839	47533911	protein_coding	Ezh2	intron	ENSMUSG00000029687	ProperStrand	27	1	-17.2508
chr12	31529460	31529514	LINE	L1Md_F2	L1	chr12L1Md_F231529416	ProperStrand	1	chr17	64005827	64005871	LINE	L1_Mur3	L1	chr17L1_Mur364005260	NonProperStrand	1	1	-inf
chr16	13813678	13813725	protein_coding	Rrn3	utr3	ENSMUSG00000022682	ProperStrand	46	chr5	140440459	140440537	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	81	1	-11.9544
chr5	30060639	30060739	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr10	122565390	122565480	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-14.0617
chr1	183330864	183331111	protein_coding	Cnih3	intron	ENSMUSG00000026514	NonProperStrand	48	chr1	183329954	183330859	pseudogene	Gm16547	.	ENSMUSG00000089888	ProperStrand	1	1	-inf
chr4	111886238	111886258	DNA	MER2	MER2_type	chr4MER2111886109	NonProperStrand	1	chr5	140768788	140768903	protein_coding	Mad1l1	intron	ENSMUSG00000029554	ProperStrand	144	1	-inf
chr1	126237398	126237498	LTR	MTE2a	MaLR	chr1MTE2a126237241	NonProperStrand	1	chr1	126237115	126237205	SINE	B3A	B2	chr1B3A126237069	NonProperStrand	1	1	-inf
chr13	44869586	44869614	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr12	41760396	41760433	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	1	-4.3693
chr1	48084615	48084705	LINE	L1Md_F3	L1	chr1L1Md_F348084230	NonProperStrand	1	chr1	48084815	48084915	Simple_repeat	(TCC)n	Simple_repeat	chr1(TCC)n48084816	ProperStrand	1	1	-inf
chr18	46165863	46165963	LINE	L1Md_A	L1	chr18L1Md_A46163912	ProperStrand	2	chr9	108635993	108636084	protein_coding	Prkar2a	intron	ENSMUSG00000032601	NonProperStrand	68	2	-inf
chr9	67627961	67628101	LTR	MTD	MaLR	chr9MTD67627817	ProperStrand	1	chr10	90458721	90458739	protein_coding	Apaf1	intron	ENSMUSG00000019979	NonProperStrand	3	1	-inf
chrX	17188878	17188968	LINE	L1MA10	L1	chrXL1MA1017188884	NonProperStrand	1	chrX	17189006	17189106	SINE	RSINE1	B4	chrXRSINE117189010	ProperStrand	1	1	-inf
chr4	119063700	119063762	protein_coding	Ccdc30	intron	ENSMUSG00000028637	ProperStrand	31	chr2	5379278	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.8357
chr6	3201469	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	12998231	12998301	antisense	Airn	.	ENSMUSG00000078247	ProperStrand	40	1	-3.6332
chr2	156470888	156470929	protein_coding	Dlgap4	intron	ENSMUSG00000061689	ProperStrand	127	chr15	73414667	73414718	protein_coding	Slc45a4	intron	ENSMUSG00000079020	ProperStrand	12	1	-13.8035
chr10	122565131	122565174	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr3	8853792	8853880	protein_coding	Mrps28	intron	ENSMUSG00000040269	ProperStrand	70	1	-12.2052
chr7	77203653	77203743	LINE	Lx8	L1	chr7Lx877203564	NonProperStrand	1	chr7	77175283	77175383	SINE	MIRb	MIR	chr7MIRb77175196	ProperStrand	1	1	-inf
chr11	51008446	51008536	lincRNA	5133400J02Rik	intron	ENSMUSG00000086646	NonProperStrand	2	chr11	51824808	51824908	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	1	-17.4998
chr5	103813109	103813209	LINE	Lx9	L1	chr5Lx9103813053	NonProperStrand	5	chr5	103812945	103813035	SINE	B1_Mm	Alu	chr5B1_Mm103812906	NonProperStrand	2	2	-inf
chr6	49236496	49236598	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr19	37011708	37011767	protein_coding	Btaf1	intron	ENSMUSG00000040565	ProperStrand	12	1	-12.6108
chr17	39843421	39843481	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr16	4497143	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	1	-4.1672
chr4	53860704	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr4	124731011	124731074	protein_coding	Gnl2	intron	ENSMUSG00000028869	ProperStrand	17	2	-18.5467
chrX	95025862	95025878	LINE	L1M2	L1	chrXL1M295025539	NonProperStrand	10	chr19	25611700	25611830	protein_coding	Dmrt1	intron	ENSMUSG00000024837	ProperStrand	24	1	-17.5578
chr1	142033470	142033560	protein_coding	Cfh	intron	ENSMUSG00000026365	ProperStrand	3	chr7	91745018	91745118	protein_coding	Fah	intron	ENSMUSG00000030630	ProperStrand	1	1	-inf
chr18	80447729	80447850	LINE	Lx	L1	chr18Lx80447727	ProperStrand	1	chr17	39847244	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr3	124824543	124824633	LINE	L1_Mur2	L1	chr3L1_Mur2124824290	NonProperStrand	1	chr3	124824069	124824169	LTR	ORR1B1-int	MaLR	chr3ORR1B1-int124823557	NonProperStrand	1	1	-inf
chr8	43134802	43134902	LINE	L1Md_T	L1	chr8L1Md_T43134509	NonProperStrand	2	chr9	72749520	72749610	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-16.1091
chr2	22744837	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	146466135	146466165	lincRNA	Gm16889	intron	ENSMUSG00000084976	NonProperStrand	52	1	-7.0930
chr3	9555032	9555089	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	chr5	116584282	116584321	protein_coding	Ccdc60	intron	ENSMUSG00000043913	ProperStrand	12	1	-9.7529
chr13	17925525	17925615	LTR	RMER15-int	ERVL	chr13RMER15-int17925022	ProperStrand	1	chr13	17925727	17925827	SINE	B2_Mm2	B2	chr13B2_Mm217925710	ProperStrand	1	1	-inf
chr19	56519828	56519918	LTR	MTE2a	MaLR	chr19MTE2a56519626	NonProperStrand	1	chr19	56519965	56520065	LTR	MTEb	MaLR	chr19MTEb56519964	ProperStrand	1	1	-inf
chrX	4899371	4899396	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr9	110281287	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.9960
chr17	39846952	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	74579360	74579454	protein_coding	Lynx1	utr3	ENSMUSG00000022594	NonProperStrand	4	1	-3.6552
chr9	48250326	48250416	SINE	RSINE1	B4	chr9RSINE148250294	NonProperStrand	4	chr9	48250433	48250533	Simple_repeat	(GA)n	Simple_repeat	chr9(GA)n48250457	ProperStrand	4	4	-inf
chr10	11187981	11189670	LTR	MuRRS4-int	ERV1	chr10MuRRS4-int11187463	ProperStrand	1	chr10	11190985	11191059	LTR	RLTR1B	ERV1	chr10RLTR1B11190734	ProperStrand	1	1	-inf
chr15	34482794	34482913	LINE	L1Md_T	L1	chr15L1Md_T34482447	NonProperStrand	1	chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-inf
chr10	127463951	127464029	protein_coding-noncoding	Prim1	utr5	ENSMUSG00000025395	ProperStrand	5	chr5	30712017	30712034	protein_coding	Otof	intron	ENSMUSG00000062372	ProperStrand	2	1	-23.2669
chr4	155342599	155342689	LTR	MTD	MaLR	chr4MTD155342607	ProperStrand	1	chr4	155342495	155342595	SINE	PB1D9	Alu	chr4PB1D9155342500	ProperStrand	1	1	-inf
chr2	32220149	32231425	protein_coding-noncoding	Ciz1	utr5	ENSMUSG00000039205	ProperStrand	39	chr2	32182505	32206524	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	3	-inf
chr10	117770387	117770491	LTR	LTRIS_Mus	ERV1	chr10LTRIS_Mus117770115	ProperStrand	2	chr10	117763802	117763850	pseudogene	Gm9040	.	ENSMUSG00000074689	ProperStrand	2	2	-inf
chr5	146261039	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	23548479	23565147	LTR	RLTR19	ERVK	chr5RLTR1923548325	ProperStrand	1	1	-inf
chr19	44573879	44573959	protein_coding	Wnt8b	intron	ENSMUSG00000036961	ProperStrand	19	chr16	10842192	10842257	protein_coding	A630055G03Rik	utr3	ENSMUSG00000037991	NonProperStrand	7	1	-18.5508
chr11	109011655	109011710	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	106841538	106841626	protein_coding	2210012G02Rik	intron	ENSMUSG00000028619	ProperStrand	16	1	-8.7572
chr19	4178923	4179023	SINE	B1F1	Alu	chr19B1F14178882	NonProperStrand	1	chr19	4179076	4179166	SINE	B1_Mus1	Alu	chr19B1_Mus14179014	NonProperStrand	1	1	-inf
chr5	122804923	122806349	protein_coding	Vps29	intron	ENSMUSG00000029462	NonProperStrand	18	chr5	122802804	122803827	protein_coding	Rad9b	intron	ENSMUSG00000038569	ProperStrand	44	5	-20.3288
chr17	71641581	71641659	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	chr2	167029647	167031335	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	1	-11.0365
chr17	56046894	56046971	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int56046754	ProperStrand	4	chr9	123462082	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-10.7746
chr7	13028886	13028978	SINE	B4A	B4	chr7B4A13028817	ProperStrand	31	chr14	57965317	57965352	protein_coding	Cryl1	intron	ENSMUSG00000021947	ProperStrand	31	1	-14.6950
chr8	107677700	107677742	SINE	B2_Mm2	B2	chr8B2_Mm2107677655	NonProperStrand	2	chr2	5379307	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr12	86448111	86448162	LINE	L1ME3B	L1	chr12L1ME3B86448067	NonProperStrand	1	chr17	39847212	39847240	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	115612089	115612189	SINE	ID_B1	B4	chr5ID_B1115612058	ProperStrand	1	chr5	115612276	115612366	SINE	PB1D10	Alu	chr5PB1D10115612291	ProperStrand	1	1	-inf
chr11	43718839	43718923	LINE	L1_Mus1	L1	chr11L1_Mus143718857	ProperStrand	1	chr11	43719618	43719683	SINE	B1_Mur4	Alu	chr11B1_Mur443719569	ProperStrand	1	1	-inf
chr1	89690813	89690893	SINE	B2_Mm2	B2	chr1B2_Mm289690787	ProperStrand	1	chr1	89684314	89684343	protein_coding-noncoding	Atg16l1	utr5	ENSMUSG00000026289	ProperStrand	32	1	-inf
chr6	65913985	65914085	LTR	MTA_Mm	MaLR	chr6MTA_Mm65913800	NonProperStrand	2	chr2	135984358	135984448	protein_coding	Pak7	intron	ENSMUSG00000039913	NonProperStrand	40	2	-inf
chr17	83626612	83626679	LTR	MTC	MaLR	chr17MTC83626388	ProperStrand	1	chr2	5379294	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr8	44952229	44952245	LINE	L1Md_F3	L1	chr8L1Md_F344951540	NonProperStrand	18	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.8673
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr14	61647486	61647555	protein_coding	Tnfrsf19	intron	ENSMUSG00000060548	ProperStrand	20	1	-13.8606
chr11	116569795	116569872	LTR	RMER16	ERVK	chr11RMER16116569683	NonProperStrand	7	chr11	116568310	116568337	SINE	B1_Mur4	Alu	chr11B1_Mur4116568247	ProperStrand	6	1	-inf
chr3	69106722	69106803	LTR	ORR1B1-int	MaLR	chr3ORR1B1-int69106690	NonProperStrand	4	chr2	39018632	39018701	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	1	-17.4575
chr7	11814381	11814481	LTR	RLTR12B	ERVK	chr7RLTR12B11814245	NonProperStrand	1	chr7	11813888	11813978	SINE	B3	B2	chr7B311813820	ProperStrand	1	1	-inf
chr9	119305504	119305604	LTR	RLTR25B	ERVK	chr9RLTR25B119305497	NonProperStrand	1	chr9	119305655	119305745	SINE	B3	B2	chr9B3119305673	NonProperStrand	1	1	-inf
chr11	70707632	70707692	protein_coding	Rabep1	intron	ENSMUSG00000020817	ProperStrand	26	chr10	88433053	88433091	protein_coding	Ano4	intron	ENSMUSG00000035189	NonProperStrand	42	1	-14.4423
chr14	18331023	18331057	LTR	RLTR23	ERV1	chr14RLTR2318330822	ProperStrand	1	chr9	123462153	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	107212518	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr7	28813923	28814038	LTR	RMER19C	ERVK	chr7RMER19C28813816	ProperStrand	18	1	-14.7158
chr9	93848589	93848689	LINE	L1Md_F2	L1	chr9L1Md_F293848595	NonProperStrand	1	chr9	93848323	93848413	LINE	Lx8	L1	chr9Lx893847991	NonProperStrand	1	1	-inf
chr17	39847281	39847344	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	44834654	44834676	protein_coding	Cd200r4	intron	ENSMUSG00000062082	ProperStrand	3	1	-5.4882
chr17	57161626	57161716	protein_coding	Khsrp	utr3	ENSMUSG00000007670	NonProperStrand	1	chr14	122606057	122606157	protein_coding	Clybl	intron	ENSMUSG00000025545	ProperStrand	59	1	-inf
chr19	5601207	5601297	LTR	RMER21A	ERV1	chr19RMER21A5601161	NonProperStrand	2	chr19	5601041	5601141	SINE	B1_Mus2	Alu	chr19B1_Mus25600993	NonProperStrand	2	2	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr19	8888562	8888639	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	1	-6.2120
chr8	91590051	91590183	LTR	RLTR42-int	ERVK	chr8RLTR42-int91590023	ProperStrand	8	chr8	91589943	91590033	LTR	RLTR42	ERVK	chr8RLTR4291589786	ProperStrand	7	7	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	45434290	45434353	LTR	LTR50	ERVL	chr5LTR5045434219	ProperStrand	3	1	-4.3512
chr8	62237988	62238078	LINE	L1_Mur3	L1	chr8L1_Mur362237973	ProperStrand	1	chr8	62238293	62238393	LINE	L1_Mur3	L1	chr8L1_Mur362238072	ProperStrand	1	1	-inf
chr14	61397667	61397692	antisense	Gm15919	.	ENSMUSG00000084951	ProperStrand	2	chr1	135253950	135254045	protein_coding	Ren1	intron	ENSMUSG00000070645	NonProperStrand	16	1	-inf
chr11	113619748	113619764	DNA	RCHARR1	MER1_type	chr11RCHARR1113619618	ProperStrand	2	chr17	39846428	39846709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr17	39846458	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	131886794	131886866	LTR	MTC	MaLR	chr5MTC131886702	ProperStrand	5	1	-3.1907
chr7	126467119	126467222	LINE	Lx5	L1	chr7Lx5126466742	ProperStrand	1	chr17	39847543	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	23653586	23653690	LINE	L1_Mus2	L1	chrXL1_Mus223653043	NonProperStrand	1	chr5	107554795	107554849	protein_coding	Tgfbr3	intron	ENSMUSG00000029287	NonProperStrand	60	1	-inf
chr17	39847767	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	23269124	23269152	SINE	B3	B2	chr19B323269005	ProperStrand	1	1	-inf
chr7	16362929	16362997	LINE	L1Md_F2	L1	chr7L1Md_F216362908	NonProperStrand	4	chr16	93853111	93853174	protein_coding	Morc3	intron	ENSMUSG00000039456	ProperStrand	53	1	-17.9108
mmu-miR-3968	3	21	miRNA	mmu-miR-3968	.	mmu-miR-3968	ProperStrand	12	chr2	3410873	3410891	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-17.4442
chr1	45276591	45276691	LINE	Lx3_Mus	L1	chr1Lx3_Mus45275881	ProperStrand	1	chr1	45276834	45276924	LINE	Lx3_Mus	L1	chr1Lx3_Mus45276806	ProperStrand	1	1	-inf
chr10	35837501	35837591	LINE	Lx2B	L1	chr10Lx2B35837438	NonProperStrand	1	chr10	35837157	35837257	SINE	RSINE1	B4	chr10RSINE135837070	NonProperStrand	1	1	-inf
chr10	4025885	4025937	LINE	Lx8	L1	chr10Lx84024999	NonProperStrand	4	chr10	4026034	4026103	LINE	Lx8	L1	chr10Lx84025978	ProperStrand	2	1	-20.9262
chr14	19278161	19278206	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr6	134700409	134700506	protein_coding	Dusp16	intron	ENSMUSG00000030203	NonProperStrand	19	1	-13.8797
chr2	22910089	22910143	SINE	B1_Mur1	Alu	chr2B1_Mur122909982	NonProperStrand	1	chr9	123461801	123461865	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	57951761	57952757	protein_coding	Atad2	intron	ENSMUSG00000022360	NonProperStrand	53	chr1	11125483	11125560	protein_coding	Prex2	intron	ENSMUSG00000048960	ProperStrand	26	1	-13.9666
chr11	69667885	69667975	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr8	126944747	126944781	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-7.7346
chrX	136067162	136067621	protein_coding	D330045A20Rik	intron	ENSMUSG00000042498	NonProperStrand	6	chr13	97190550	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr1	180437854	180437874	LINE	Lx2B	L1	chr1Lx2B180437343	ProperStrand	1	chr1	55089086	55089211	LTR	RLTR15	ERVK	chr1RLTR1555089095	ProperStrand	8	1	-inf
chr18	77508093	77508119	LTR	MERVL-int	ERVL	chr18MERVL-int77503653	NonProperStrand	8	chr18	77557288	77557415	protein_coding	Loxhd1	intron	ENSMUSG00000032818	NonProperStrand	260	2	-20.4423
chr5	16805116	16805206	LINE	L1Md_F2	L1	chr5L1Md_F216804694	NonProperStrand	1	chr5	34881441	34881541	protein_coding	Sh3bp2	intron	ENSMUSG00000054520	NonProperStrand	3	1	-inf
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr4	153722192	153722209	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	43	1	-5.1358
chr12	31847991	31848091	LTR	MTA_Mm-int	MaLR	chr12MTA_Mm-int31847956	ProperStrand	2	chr12	31847869	31847959	LTR	MTA_Mm	MaLR	chr12MTA_Mm31847562	ProperStrand	2	2	-inf
chr7	101223801	101223901	LINE	L1MA6	L1	chr7L1MA6101223676	NonProperStrand	1	chr7	101224039	101224129	LINE	Lx7	L1	chr7Lx7101224045	NonProperStrand	1	1	-inf
chr6	143086473	143086569	DNA	BLACKJACK	AcHobo	chr6BLACKJACK143086443	NonProperStrand	2	chr17	39848426	39848451	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	2	-inf
chr14	77840620	77840638	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	chr17	24721139	24721234	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-6.3320
chr10	77488266	77488311	LTR	IAPLTR1_Mm	ERVK	chr10IAPLTR1_Mm77487968	NonProperStrand	3	chr17	39847844	39847914	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr1	136766672	136766766	protein_coding-noncoding	Ppp1r12b	utr3	ENSMUSG00000073557	NonProperStrand	5	chr1	136765959	136766022	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-15.4763
chr1	59949200	59952953	LTR	ORR1A4	MaLR	chr1ORR1A459952708	NonProperStrand	4	chr1	59981664	59981787	protein_coding	Fam117b	intron	ENSMUSG00000041040	ProperStrand	19	3	-26.9727
chr17	39846462	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	58137703	58139060	lincRNA	1700047K16Rik	exon	ENSMUSG00000087347	NonProperStrand	5	1	-3.1907
chr15	84956266	84956365	protein_coding	Smc1b	intron	ENSMUSG00000022432	ProperStrand	61	chr18	21753027	21753043	protein_coding	Klhl14	intron	ENSMUSG00000042514	NonProperStrand	2	1	-19.0498
chr10	7615196	7615299	LTR	MMERVK10C-int	ERVK	chr10MMERVK10C-int7610805	ProperStrand	4	chr5	30058622	30058640	SINE	PB1D7	Alu	chr5PB1D730058578	NonProperStrand	3	1	-inf
chr11	104334588	104334660	LINE	L1M5	L1	chr11L1M5104334530	NonProperStrand	1	chr2	180191635	180191697	protein_coding	Slco4a1	intron	ENSMUSG00000038963	NonProperStrand	161	1	-inf
chr11	109011644	109011704	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	71052296	71052366	LINE	L1MB5	L1	chr1L1MB571051493	ProperStrand	2	1	-13.5345
chr1	71071734	71071825	LINE	L1_Mus1	L1	chr1L1_Mus171071636	ProperStrand	1	chr12	85235061	85235095	protein_coding	Numb	intron	ENSMUSG00000021224	ProperStrand	34	1	-inf
chr11	106114994	106115094	protein_coding-noncoding	Ftsj3	utr3	ENSMUSG00000020706	NonProperStrand	2	chr11	106114898	106114988	protein_coding	Ftsj3	exon	ENSMUSG00000020706	NonProperStrand	2	1	-19.8939
chr1	153456670	153456693	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	chr9	72694185	72694234	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-7.4611
chr18	75950684	75950710	LTR	RLTR12B	ERVK	chr18RLTR12B75950445	ProperStrand	1	chr16	36035310	36035326	protein_coding	Kpna1	utr3	ENSMUSG00000022905	ProperStrand	174	1	-inf
chr1	163693429	163693451	LINE	Lx8	L1	chr1Lx8163693406	ProperStrand	1	chr17	39847811	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	25762159	25762218	LINE	L1MD1	L1	chr14L1MD125761991	NonProperStrand	1	chr9	123461954	123462003	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	97078615	97078705	LTR	RMER12	ERVK	chr9RMER1297078606	ProperStrand	6	chr9	97078517	97078617	LTR	RMER15	ERVL	chr9RMER1597078213	NonProperStrand	7	4	-inf
chr11	106785475	106786105	DNA	MER5A	MER1_type	chr11MER5A106785452	ProperStrand	17	chr13	18766995	18767085	LTR	ORR1E	MaLR	chr13ORR1E18766961	ProperStrand	1	1	-inf
chr17	39845769	39845817	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	56100350	56100434	protein_coding	Ccdc94	intron	ENSMUSG00000003208	ProperStrand	32	1	-3.3487
chr17	20951431	20955795	LINE	Lx	L1	chr17Lx20954516	NonProperStrand	4	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr5	114851994	114852015	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr9	110281284	110281333	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-4.8997
chr7	12930799	12930846	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr1	63147399	63148432	protein_coding	Ino80d	intron	ENSMUSG00000040865	ProperStrand	58	1	-11.5124
chr2	166561991	166562081	DNA	URR1B	MER1_type	chr2URR1B166561905	ProperStrand	1	chr2	166561691	166561791	SINE	B1_Mur1	Alu	chr2B1_Mur1166561717	ProperStrand	1	1	-inf
chr4	149120029	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr16	32243772	32243799	protein_coding	Fbxo45	intron	ENSMUSG00000035764	ProperStrand	22	1	-8.5845
chr5	43379884	43379974	LINE	L1MA5A	L1	chr5L1MA5A43379889	NonProperStrand	1	chr5	43380208	43380308	LTR	MTA_Mm	MaLR	chr5MTA_Mm43380111	ProperStrand	1	1	-inf
chr4	129602244	129602308	LTR	ORR1C2	MaLR	chr4ORR1C2129602093	ProperStrand	1	chr10	84418060	84418082	protein_coding	Ric8b	intron	ENSMUSG00000035620	NonProperStrand	58	1	-inf
chr8	106189256	106189356	LTR	ORR1C2	MaLR	chr8ORR1C2106189164	ProperStrand	1	chr8	106189045	106189135	Low_complexity	CT-rich	Low_complexity	chr8CT-rich106189024	ProperStrand	2	1	-inf
chr8	105774054	105774107	LINE	Lx3_Mus	L1	chr8Lx3_Mus105773513	ProperStrand	12	chr9	64175665	64175706	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-12.2246
chr12	75654537	75654600	DNA	FordPrefect	Tip100	chr12FordPrefect75654436	NonProperStrand	2	chr2	29901238	29902253	protein_coding	Wdr34	intron	ENSMUSG00000039715	NonProperStrand	26	2	-inf
chr2	26233821	26233908	protein_coding	Snapc4	intron	ENSMUSG00000036281	NonProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr9	121985140	121985192	LINE	L1ME4a	L1	chr9L1ME4a121984922	NonProperStrand	1	chr17	30458150	30458249	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-inf
chr12	80228331	80228448	LTR	MERVL-int	ERVL	chr12MERVL-int80224802	ProperStrand	30	chr9	75221679	75221696	protein_coding	Mapk6	intron	ENSMUSG00000042688	ProperStrand	2	1	-22.0647
chr14	120294069	120294114	LTR	IAPEY3_LTR	ERVK	chr14IAPEY3_LTR120294057	ProperStrand	1	chr14	120291808	120291861	LTR	MTB	MaLR	chr14MTB120291530	NonProperStrand	1	1	-inf
chr6	42278824	42278914	SINE	B3	B2	chr6B342278729	NonProperStrand	2	chr6	42278928	42279028	SINE	B4A	B4	chr6B4A42278932	NonProperStrand	2	2	-inf
chr9	108494922	108495051	protein_coding	P4htm	intron	ENSMUSG00000006675	NonProperStrand	85	chr13	44869617	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.8343
chr8	119930070	119930170	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	chr3	8805524	8805614	protein_coding	Mrps28	intron	ENSMUSG00000040269	ProperStrand	70	1	-9.9416
chr19	7448911	7448947	protein_coding	AI846148	intron	ENSMUSG00000024970	ProperStrand	33	chr2	156517300	156517411	protein_coding	Dlgap4	intron	ENSMUSG00000061689	ProperStrand	127	1	-11.7244
chr12	82266794	82266819	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	chr8	72414167	72414223	protein_coding	Yjefn3	intron	ENSMUSG00000048967	ProperStrand	21	1	-11.9910
chr9	123461991	123462016	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	11265711	11265746	protein_coding	Esrp1	intron	ENSMUSG00000040728	ProperStrand	8	1	-4.8360
chr11	78181689	78181754	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr8	70896242	70896261	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-9.6421
chr14	21311982	21312082	protein_coding	Zmynd17	intron	ENSMUSG00000021815	NonProperStrand	5	chr6	17676407	17676497	protein_coding	St7	intron	ENSMUSG00000029534	NonProperStrand	11	1	-21.8628
chr4	111592168	111592258	protein_coding	Skint7	utr5	ENSMUSG00000049214	ProperStrand	2	chr4	111592259	111592359	protein_coding	Skint8	intron	ENSMUSG00000078599	ProperStrand	2	1	-19.8939
chr4	57859763	57859877	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	chr13	97190561	97190592	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.7121
chr17	39843411	39843487	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	160647077	160647123	protein_coding	Zhx3	intron	ENSMUSG00000035877	NonProperStrand	12	1	-5.6158
chr17	39847102	39847163	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	122609265	122610079	protein_coding	Ppp1cc	intron	ENSMUSG00000004455	NonProperStrand	2	1	-6.5615
chr2	20583827	20583917	protein_coding-noncoding	Etl4	utr5	ENSMUSG00000036617	ProperStrand	5	chr2	20583932	20584032	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	3	-inf
chr10	24174313	24174353	DNA	Zaphod	Tip100	chr10Zaphod24174195	NonProperStrand	2	chr10	24169696	24169808	lincRNA	Gm15271	intron	ENSMUSG00000086148	ProperStrand	3	1	-20.8297
chr14	62581607	62581707	LINE	L1MA8	L1	chr14L1MA862581608	NonProperStrand	2	chr14	62581515	62581605	LTR	RMER19C	ERVK	chr14RMER19C62580899	ProperStrand	2	2	-inf
chr16	35981614	35981648	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr2	126559012	126559082	protein_coding	Usp8	intron	ENSMUSG00000027363	ProperStrand	5	1	-15.0561
chr17	39847319	39847365	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	89146495	89146771	SINE	B3	B2	chr15B389146696	NonProperStrand	1	1	-inf
chr5	136362668	136362751	SINE	B3	B2	chr5B3136362676	NonProperStrand	3	chr5	140205557	140205626	protein_coding	Micall2	intron	ENSMUSG00000036718	ProperStrand	59	3	-inf
chr11	13047612	13047712	LINE	L1VL4	L1	chr11L1VL413042620	NonProperStrand	1	chr11	13047743	13047833	LINE	L1_Mus2	L1	chr11L1_Mus213047686	NonProperStrand	1	1	-inf
chr10	77064027	77064577	LTR	MT-int	MaLR	chr10MT-int77064524	NonProperStrand	1	chr10	77053179	77053244	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	NonProperStrand	42	1	-inf
chr7	143267144	143267261	LINE	Lx7	L1	chr7Lx7143267165	NonProperStrand	4	chr7	143267305	143267407	LTR	MTEa	MaLR	chr7MTEa143267280	ProperStrand	4	3	-inf
chr13	106588395	106588495	LINE	L1Md_T	L1	chr13L1Md_T106583211	NonProperStrand	1	chr13	106588852	106588942	LINE	L1Md_T	L1	chr13L1Md_T106588668	NonProperStrand	1	1	-inf
chr13	113959525	113959609	Other	RMER1B	Other	chr13RMER1B113959332	ProperStrand	1	chr13	113962153	113962199	protein_coding	Gzmk	exon	ENSMUSG00000042385	NonProperStrand	351	1	-inf
chr5	146650263	146650353	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146650207	NonProperStrand	1	chr5	146649790	146649890	LTR	RLTR10B	ERVK	chr5RLTR10B146649553	NonProperStrand	1	1	-inf
chr17	39846885	39846912	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	32749214	32749231	protein_coding	Fam129b	intron	ENSMUSG00000026796	NonProperStrand	3	1	-4.3017
chr12	40504596	40504941	LINE	L1ME2	L1	chr12L1ME240504619	ProperStrand	2	chr12	40504452	40504579	LINE	L1MEf	L1	chr12L1MEf40504117	ProperStrand	2	2	-inf
chr17	39846718	39846815	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	133477341	133477360	LTR	MTB	MaLR	chr4MTB133477329	ProperStrand	1	1	-inf
chr17	70963667	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	3	-6.1678
chr14	69767788	69770877	LTR	MTD	MaLR	chr14MTD69770766	NonProperStrand	1	chr14	69767680	69767770	LTR	ORR1A4	MaLR	chr14ORR1A469767617	ProperStrand	2	1	-inf
chr15	75929038	75929709	DNA	URR1A	MER1_type	chr15URR1A75929556	NonProperStrand	1	chr15	75924688	75924757	LTR	MLT1F2	MaLR	chr15MLT1F275924687	NonProperStrand	1	1	-inf
chr3	32602033	32602128	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int32602017	NonProperStrand	1	chr17	35972581	35972603	protein_coding	Tubb5	exon	ENSMUSG00000001525	ProperStrand	7	1	-inf
chr12	69159044	69159090	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	chr5	135910984	135911046	protein_coding	Hip1	utr3	ENSMUSG00000039959	ProperStrand	226	1	-10.6323
chr17	39845546	39845625	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr5	53645965	53646024	SINE	B1_Mus1	Alu	chr5B1_Mus153645892	NonProperStrand	5	1	-7.0883
chr1	127322528	127322644	protein_coding	Actr3	intron	ENSMUSG00000026341	NonProperStrand	28	chr9	115016377	115016419	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	1	-11.2403
chr16	48108390	48108409	LTR	MLT1B	MaLR	chr16MLT1B48108153	ProperStrand	1	chr17	39847889	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	64767443	64767533	LINE	L1Md_F2	L1	chr17L1Md_F264767417	ProperStrand	1	chr17	64767169	64767269	LINE	Lx9	L1	chr17Lx964766923	ProperStrand	1	1	-inf
chr6	94625989	94626017	protein_coding	Lrig1	intron	ENSMUSG00000030029	ProperStrand	40	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-9.9553
chr11	4583273	4583326	protein_coding	Ascc2	utr3	ENSMUSG00000020412	NonProperStrand	40	chr15	12454536	12454626	protein_coding	Pdzd2	intron	ENSMUSG00000022197	ProperStrand	76	1	-12.3660
chr9	41974670	41974770	LINE	L1MA5	L1	chr9L1MA541974289	ProperStrand	1	chr9	41974878	41974968	LTR	ORR1C2	MaLR	chr9ORR1C241974795	ProperStrand	1	1	-inf
chr11	76587317	76587393	DNA	RCHARR1	MER1_type	chr11RCHARR176587297	NonProperStrand	7	chr11	76595636	76595702	protein_coding	Cpd	utr3	ENSMUSG00000020841	ProperStrand	111	1	-15.2138
chr12	82182659	82182715	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	chr7	99482867	99482933	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-5.3078
chr7	66002878	66002957	protein_coding	Atp10a	intron	ENSMUSG00000025324	ProperStrand	84	chr15	73553576	73553607	protein_coding	Ptp4a3	utr5	ENSMUSG00000059895	ProperStrand	1	1	-inf
chr15	53275700	53275794	LTR	MTB_Mm	MaLR	chr15MTB_Mm53275506	NonProperStrand	1	chr15	53272270	53272308	Other	RMER1C	Other	chr15RMER1C53271861	ProperStrand	2	1	-inf
chr19	32530248	32530338	LTR	MTA_Mm	MaLR	chr19MTA_Mm32529935	ProperStrand	1	chr19	32530376	32530476	LTR	MTE2a-int	MaLR	chr19MTE2a-int32530330	NonProperStrand	1	1	-inf
chr14	65548045	65548080	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	chr19	6199043	6199156	protein_coding	1700123I01Rik	intron	ENSMUSG00000024786	ProperStrand	10	2	-inf
chr14	121372247	121372347	LINE	Lx3_Mus	L1	chr14Lx3_Mus121372030	NonProperStrand	1	chr1	65206469	65206559	protein_coding	Idh1	intron	ENSMUSG00000025950	NonProperStrand	12	1	-inf
chr5	52147868	52147915	LTR	MLT1C	MaLR	chr5MLT1C52147749	NonProperStrand	2	chr11	57526881	57526935	protein_coding	Galnt10	intron	ENSMUSG00000020520	ProperStrand	49	1	-19.9531
chr19	53349808	53349892	LINE	L2c	L2	chr19L2c53349774	ProperStrand	1	chr18	12156867	12156941	protein_coding	6030446N20Rik	intron	ENSMUSG00000049411	ProperStrand	38	1	-inf
chr2	136898852	136898913	DNA	MER5B	MER1_type	chr2MER5B136898841	ProperStrand	1	chr9	123461802	123461883	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	17905476	17905566	LINE	L1MB7	L1	chr13L1MB717905497	NonProperStrand	1	chr13	17905344	17905444	SINE	B2_Mm1a	B2	chr13B2_Mm1a17905292	NonProperStrand	1	1	-inf
chr1	51489813	51489903	LINE	L1Md_F2	L1	chr1L1Md_F251488316	NonProperStrand	1	chr1	51490244	51490344	LINE	L1Md_Gf	L1	chr1L1Md_Gf51490258	ProperStrand	2	1	-inf
chr2	12360902	12360992	LINE	L1Md_F2	L1	chr2L1Md_F212360516	NonProperStrand	1	chr6	3548860	3548960	protein_coding	Ccdc132	intron	ENSMUSG00000001376	ProperStrand	42	1	-inf
chr11	116470561	116470639	protein_coding	Rhbdf2	intron	ENSMUSG00000020806	ProperStrand	55	chr4	133965203	133965244	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	1	-13.0685
chr16	33058809	33060120	protein_coding-noncoding	Rpl35a	utr5	ENSMUSG00000060636	ProperStrand	14	chr16	33057400	33057502	protein_coding	Rpl35a	intron	ENSMUSG00000060636	ProperStrand	18	2	-inf
chr4	74263734	74263783	LTR	RLTR25B	ERVK	chr4RLTR25B74263523	ProperStrand	1	chr2	32963301	32963340	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-inf
chr2	80325065	80325108	LTR	RLTR20A1	ERVK	chr2RLTR20A180325050	ProperStrand	1	chr9	99513232	99513318	protein_coding	A4gnt	intron	ENSMUSG00000037953	NonProperStrand	8	1	-inf
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	24	chr10	86269727	86269770	protein_coding	Nt5dc3	intron	ENSMUSG00000054027	NonProperStrand	11	1	-17.4015
chr11	95276524	95276614	protein_coding	Spop	intron	ENSMUSG00000057522	NonProperStrand	27	chr11	95282183	95282283	protein_coding	Spop	intron	ENSMUSG00000057522	ProperStrand	38	1	-14.5615
chr15	58992662	58992762	LTR	ORR1D2	MaLR	chr15ORR1D258992437	NonProperStrand	2	chr15	58992831	58992921	SINE	B4A	B4	chr15B4A58992839	ProperStrand	1	1	-inf
chr12	85374443	85374617	LTR	ORR1E	MaLR	chr12ORR1E85374381	NonProperStrand	11	chr13	35991479	35991584	protein_coding	Rpp40	intron	ENSMUSG00000021418	ProperStrand	11	4	-22.1772
chr17	39847762	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	108994608	108994656	protein_coding	Ccdc51	exon	ENSMUSG00000025645	ProperStrand	2	1	-5.4040
chr17	46125670	46128552	LINE	L1MB3	L1	chr17L1MB346128035	ProperStrand	4	chr17	46128587	46128687	LINE	L1MB3	L1	chr17L1MB346128500	ProperStrand	6	4	-inf
chr19	5798561	5798584	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr17	56309168	56309255	protein_coding	Tnfaip8l1	intron	ENSMUSG00000044469	ProperStrand	56	1	-4.5712
chr8	104641373	104641631	LINE	L1M1	L1	chr8L1M1104641439	NonProperStrand	4	chr8	104641636	104641726	LTR	MTD	MaLR	chr8MTD104641658	ProperStrand	4	4	-inf
chr4	120932121	120932228	LINE	L1Md_A	L1	chr4L1Md_A120931550	ProperStrand	2	chr17	39848254	39848306	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr11	109011643	109011676	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	115560863	115560968	protein_coding	Acads	exon	ENSMUSG00000029545	NonProperStrand	165	1	-4.1453
chr1	179037833	179037913	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr8	13769860	13769921	protein_coding	Cdc16	intron	ENSMUSG00000038416	NonProperStrand	6	1	-13.5736
chr10	83414957	83415073	DNA	Kanga1b	Tc2	chr10Kanga1b83414928	ProperStrand	6	chr10	83414853	83414951	SINE	ID4_	ID	chr10ID4_83414852	ProperStrand	7	6	-inf
chr2	132854989	132861221	LINE	L1_Mus4	L1	chr2L1_Mus4132853786	NonProperStrand	1	chr2	132861241	132862343	LINE	Lx8	L1	chr2Lx8132860587	NonProperStrand	1	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	51147745	51147872	lincRNA	Gm13497	intron	ENSMUSG00000086349	NonProperStrand	5	1	-3.1907
chr12	99198542	99198642	LINE	L1Md_F2	L1	chr12L1Md_F299198302	ProperStrand	5	chr12	99198672	99198762	LINE	L1Md_F2	L1	chr12L1Md_F299198652	NonProperStrand	6	5	-inf
chr6	145173679	145173779	protein_coding-noncoding	Kras	utr3	ENSMUSG00000030265	ProperStrand	1	chr6	145173455	145173476	protein_coding	Kras	intron	ENSMUSG00000030265	ProperStrand	2	1	-inf
chr4	10899206	10899224	LTR	MTD	MaLR	chr4MTD10899172	NonProperStrand	4	chr12	78350926	78351011	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-11.5356
chr13	23555551	23555651	protein_coding	Btn1a1	utr3	ENSMUSG00000000706	NonProperStrand	212	chr17	70963672	70963762	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-3.7799
chr17	39847439	39847487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	108448018	108448076	SINE	B1F1	Alu	chr5B1F1108448015	NonProperStrand	1	1	-inf
chr7	112134543	112134632	LINE	L1Md_F	L1	chr7L1Md_F112131738	ProperStrand	1	chr12	79427140	79427240	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr17	39847767	39847865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	150340406	150340434	LTR	RLTR20B3	ERVK	chr4RLTR20B3150340199	NonProperStrand	2	1	-5.4040
chr17	73120623	73120709	LINE	L1_Mus3	L1	chr17L1_Mus373119714	ProperStrand	1	chr6	139171856	139171876	Simple_repeat	(TATATG)n	Simple_repeat	chr6(TATATG)n139171815	NonProperStrand	1	1	-inf
chr5	146261033	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	24887078	24887141	protein_coding	Zfp180	intron	ENSMUSG00000057101	ProperStrand	154	1	-3.2881
chr11	74435735	74435752	protein_coding	E130309D14Rik	intron	ENSMUSG00000069814	NonProperStrand	8	chr5	100655137	100655196	pseudogene	Gm8091	.	ENSMUSG00000085915	ProperStrand	92	1	-15.3040
chr12	108907220	108907268	SINE	MIR	MIR	chr12MIR108907169	NonProperStrand	1	chr11	3239484	3239542	protein_coding	Pik3ip1	intron	ENSMUSG00000034614	ProperStrand	11	1	-inf
chr17	39847562	39847613	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	153067535	153067617	protein_coding	Pofut1	intron	ENSMUSG00000046020	NonProperStrand	1	1	-inf
chr14	19805999	19808011	LINE	MusHAL1	L1	chr14MusHAL119807357	NonProperStrand	6	chr14	19805863	19805953	Other	RMER1B	Other	chr14RMER1B19805526	NonProperStrand	9	5	-inf
chr13	111784695	111784785	LINE	L1MD	L1	chr13L1MD111784700	ProperStrand	1	chr13	111784526	111784626	Simple_repeat	(GAA)n	Simple_repeat	chr13(GAA)n111784544	NonProperStrand	1	1	-inf
chr14	27195760	27195872	antisense	4933413J09Rik	.	ENSMUSG00000021874	ProperStrand	66	chr8	117323709	117323755	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-5.9354
chr17	39846402	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	148315307	148315328	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	11	-4.8757
chr17	39847267	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	136569854	136569952	SINE	B2_Mm2	B2	chr1B2_Mm2136569843	NonProperStrand	1	1	-inf
chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	chr13	97190599	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.2915
chr17	70963682	70963765	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr8	71592209	71592251	protein_coding	Slc18a1	intron	ENSMUSG00000036330	NonProperStrand	65	1	-6.0497
chr14	68072690	68072780	LINE	L1MD2	L1	chr14L1MD268071783	NonProperStrand	1	chr14	68071167	68071267	LINE	L1ME1	L1	chr14L1ME168071154	ProperStrand	1	1	-inf
chr11	109011797	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	181277286	181277359	protein_coding	Dnajc5	intron	ENSMUSG00000000826	NonProperStrand	9	1	-9.9559
chr5	33524346	33524397	LTR	MT2A	ERVL	chr5MT2A33524064	NonProperStrand	2	chr5	33522886	33522981	LTR	RMER19B	ERVK	chr5RMER19B33522470	NonProperStrand	18	1	-21.0482
chr11	6149953	6150043	DNA	URR1B	MER1_type	chr11URR1B6149897	NonProperStrand	6	chr11	6149797	6149897	LINE	L1M3	L1	chr11L1M36149685	NonProperStrand	3	3	-inf
chr17	39843719	39843778	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr16	4713740	4713788	protein_coding	Nmral1	exon	ENSMUSG00000063445	ProperStrand	7	1	-7.2053
chr18	69480125	69480178	LTR	RLTR11A	ERVK	chr18RLTR11A69480078	NonProperStrand	1	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr4	130825404	130825504	LTR	MTE2a	MaLR	chr4MTE2a130825347	NonProperStrand	1	chr4	130825254	130825344	Simple_repeat	(CATATA)n	Simple_repeat	chr4(CATATA)n130825274	ProperStrand	1	1	-inf
chr4	60474481	60474571	LINE	L1_Mur2	L1	chr4L1_Mur260473726	NonProperStrand	1	chr4	60474634	60474734	LINE	L1_Mur2	L1	chr4L1_Mur260474589	NonProperStrand	1	1	-inf
chr1	122357161	122357238	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr9	123461802	123462165	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	12	-6.3977
chr1	113904199	113904223	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	16	chr5	114851974	114852003	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-11.9882
chr11	107366684	107366764	SINE	B2_Mm2	B2	chr11B2_Mm2107366681	ProperStrand	1	chr11	107365098	107365170	protein_coding	Psmd12	utr3	ENSMUSG00000020720	NonProperStrand	27	1	-inf
chr13	94360791	94360813	LTR	RLTR28	ERVL	chr13RLTR2894360636	ProperStrand	1	chr13	94360818	94390848	protein_coding	Bhmt	intron	ENSMUSG00000074768	NonProperStrand	12	1	-inf
chr2	155178853	155178932	protein_coding	Pigu	intron	ENSMUSG00000038383	NonProperStrand	4	chr19	40320058	40320127	protein_coding	Pdlim1	intron	ENSMUSG00000055044	ProperStrand	44	1	-18.5642
chr15	11565940	11565956	LINE	L1Md_F2	L1	chr15L1Md_F211564539	ProperStrand	2	chr2	27536020	27536141	protein_coding	Rxra	intron	ENSMUSG00000015846	ProperStrand	73	1	-19.5916
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr2	4719448	4719591	protein_coding	Bend7	intron	ENSMUSG00000048186	ProperStrand	5	1	-11.7143
chr17	39847302	39847325	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	147039973	147040080	protein_coding	2610305D13Rik	intron	ENSMUSG00000066000	NonProperStrand	8	1	-3.3803
chr17	39847345	39847942	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	84829276	84909460	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	8	-5.1905
chr3	144012287	144012303	SINE	MIRm	MIR	chr3MIRm144012273	ProperStrand	1	chr17	56710164	56710289	protein_coding-noncoding	Safb2	utr3	ENSMUSG00000042625	NonProperStrand	12	1	-inf
chr6	3201508	3201544	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	5811770	5811796	protein_coding	Gm221	intron	ENSMUSG00000019767	ProperStrand	29	1	-4.2407
chr8	88528457	88528509	protein_coding	Phkb	intron	ENSMUSG00000036879	ProperStrand	35	chr13	97190547	97190619	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-10.0515
chr16	65376130	65376220	LINE	Lx3_Mus	L1	chr16Lx3_Mus65375927	ProperStrand	1	chr16	65376345	65376445	LINE	Lx3_Mus	L1	chr16Lx3_Mus65376152	ProperStrand	1	1	-inf
chr10	81495311	81495364	LINE	L1VL2	L1	chr10L1VL281495184	ProperStrand	2	chr10	81495080	81495145	LINE	Lx4B	L1	chr10Lx4B81494536	ProperStrand	1	1	-inf
chr1	92605137	92605237	LTR	ORR1C2	MaLR	chr1ORR1C292605075	ProperStrand	1	chr1	92604820	92604910	LTR	ORR1D1	MaLR	chr1ORR1D192604809	ProperStrand	1	1	-inf
chr11	103986918	103986967	SINE	ID_B1	B4	chr11ID_B1103986750	ProperStrand	1	chr13	49719666	49721123	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	1	-inf
chr9	123461957	123462014	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	76912166	76912233	protein_coding	Rbfox2	utr3	ENSMUSG00000033565	NonProperStrand	14	1	-3.7266
chr10	31381395	31381439	LINE	L1MDa	L1	chr10L1MDa31381040	ProperStrand	1	chr10	31383268	31383323	LTR	RMER16	ERVK	chr10RMER1631383132	NonProperStrand	1	1	-inf
chrX	144407586	144407687	SINE	B1F1	Alu	chrXB1F1144407577	ProperStrand	1	chr9	123462099	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	109011792	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	141448728	141451055	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	188	1	-3.9009
chr12	104689720	104689791	protein_coding	Ifi27l2b	intron	ENSMUSG00000021208	ProperStrand	25	chr9	64524410	64524477	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-12.5411
chr19	21276827	21276878	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n21276795	ProperStrand	2	chr8	78101015	78101057	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-15.3929
chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	chr5	143420850	143420879	protein_coding	Gm1977	intron	ENSMUSG00000079127	ProperStrand	8	1	-13.2764
chr18	34607336	34607382	protein_coding	Fam13b	intron	ENSMUSG00000036501	ProperStrand	59	chr5	20011655	20011691	protein_coding	Magi2	intron	ENSMUSG00000040003	ProperStrand	33	1	-13.2671
chr17	39847891	39847920	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	95734538	95734558	protein_coding	D2hgdh	exon	ENSMUSG00000073609	NonProperStrand	2	1	-5.4040
chr4	150514096	150514174	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr4	33027280	33027344	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	1	-6.4832
chr1	189126290	189126308	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	chr13	12396537	12396582	protein_coding	Actn2	intron	ENSMUSG00000052374	NonProperStrand	37	1	-13.9813
chr18	58660060	58660150	LINE	L1M4b	L1	chr18L1M4b58660048	ProperStrand	3	chr1	180649521	180649621	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	3	-inf
chr8	69797980	69798470	LINE	L1_Mus3	L1	chr8L1_Mus369798033	ProperStrand	1	chr8	69797722	69797812	LTR	RMER6B	ERVK	chr8RMER6B69797578	NonProperStrand	2	1	-inf
chr10	117363566	117363609	SINE	B1_Mus2	Alu	chr10B1_Mus2117363482	NonProperStrand	1	chr19	34950322	34950412	protein_coding	Pank1	intron	ENSMUSG00000033610	NonProperStrand	27	1	-inf
chr2	102829377	102829449	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr9	56223570	56223654	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-6.3724
chr3	62159301	62159335	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	chr9	32052373	32052424	protein_coding	Arhgap32	intron	ENSMUSG00000041444	ProperStrand	30	1	-14.2969
chr4	25787897	25787933	LINE	Lx6	L1	chr4Lx625787838	NonProperStrand	2	chr4	25781809	25781855	pseudogene	Gm11898	.	ENSMUSG00000083835	ProperStrand	1	1	-inf
chr5	36796654	36796704	lincRNA	2210406O10Rik	intron	ENSMUSG00000039563	ProperStrand	73	chr17	22197572	22197588	protein_coding	Zfp943	intron	ENSMUSG00000053347	ProperStrand	7	1	-16.0634
chr7	92724927	92725023	LINE	L1_Mur2	L1	chr7L1_Mur292723558	ProperStrand	1	chr7	92725751	92725799	LINE	Lx3A	L1	chr7Lx3A92725636	ProperStrand	1	1	-inf
chr18	75191377	75191413	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	chr18	75167013	75167120	protein_coding	BC031181	intron	ENSMUSG00000036299	ProperStrand	3	1	-14.2389
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr15	89228621	89228652	protein_coding	Syce3	intron	ENSMUSG00000078938	NonProperStrand	9	1	-11.7570
chr7	112134029	112134129	LINE	L1Md_F	L1	chr7L1Md_F112131738	NonProperStrand	5	chr8	91565678	91565766	protein_coding	Sall1	intron	ENSMUSG00000031665	NonProperStrand	129	1	-15.6621
chr11	109011678	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	34202317	34202366	LTR	MMETn-int	ERVK	chr7MMETn-int34202121	ProperStrand	20	1	-8.3008
chr17	39847201	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	mmu-miR-1895	4	19	miRNA	mmu-miR-1895	.	mmu-miR-1895	ProperStrand	2	1	-6.5615
chr17	39847659	39847692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	86256487	86256506	protein_coding	Cd97	intron	ENSMUSG00000002885	ProperStrand	2	1	-5.4040
chrX	101654944	101654997	LINE	Lx8	L1	chrXLx8101654814	NonProperStrand	2	chr2	5379296	5379359	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr7	4144280	4144384	LINE	L1Md_T	L1	chr7L1Md_T4137819	NonProperStrand	40	chr4	140144003	140144020	protein_coding	Arhgef10l	intron	ENSMUSG00000040964	NonProperStrand	15	1	-15.6752
chr14	78940793	78940826	SINE	B1F	Alu	chr14B1F78940787	NonProperStrand	1	chr17	36231549	36231572	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	1	-inf
chr9	122324207	122324242	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n122324053	NonProperStrand	1	chr10	119516429	119516547	protein_coding	Grip1	intron	ENSMUSG00000034813	ProperStrand	62	1	-inf
chr11	87031295	87031313	protein_coding	Trim37	intron	ENSMUSG00000018548	ProperStrand	4	chr9	40804747	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-13.1046
chr2	177233929	177234029	LINE	Lx3C	L1	chr2Lx3C177233752	ProperStrand	2	chr4	128752195	128752285	protein_coding	Rnf19b	intron	ENSMUSG00000028793	ProperStrand	15	1	-22.6177
chr13	44869846	44869897	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	43693035	43693078	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	1	-4.3993
chr6	13655546	13655594	LTR	IAPEz-int	ERVK	chr6IAPEz-int13654001	ProperStrand	1	chr6	13656503	13656571	LTR	IAPEz-int	ERVK	chr6IAPEz-int13656095	ProperStrand	1	1	-inf
chr2	173554808	173554898	LTR	ORR1D1-int	MaLR	chr2ORR1D1-int173554773	ProperStrand	1	chr2	173554557	173554657	LTR	ORR1D1	MaLR	chr2ORR1D1173554370	ProperStrand	1	1	-inf
chr9	46044680	46044780	SINE	B1_Mus1	Alu	chr9B1_Mus146044662	ProperStrand	1	chr9	46044583	46044673	SINE	B4	B4	chr9B446044408	ProperStrand	4	1	-inf
chr19	24261543	24261643	protein_coding	Tjp2	intron	ENSMUSG00000024812	NonProperStrand	8	chr9	109984814	109984904	protein_coding	Mtap4	utr3	ENSMUSG00000032479	ProperStrand	91	1	-15.3412
chr1	113550925	113551015	LINE	L1_Mur1	L1	chr1L1_Mur1113550925	ProperStrand	1	chr1	113551223	113551323	LINE	Lx2B	L1	chr1Lx2B113551149	ProperStrand	1	1	-inf
chr17	32204298	32204321	LTR	RMER19A	ERVK	chr17RMER19A32203719	ProperStrand	3	chr2	52090444	52090582	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-16.7378
chr17	39843648	39843697	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr7	5029013	5029103	protein_coding	U2af2	intron	ENSMUSG00000030435	ProperStrand	28	1	-3.9511
chr17	70963685	70963762	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	90226197	90226260	protein_coding	Sod1	intron	ENSMUSG00000022982	ProperStrand	43	1	-6.8682
chr5	146261160	146261218	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	127821774	127821850	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	1	-5.6684
chr11	71759699	71759753	LTR	MTEb	MaLR	chr11MTEb71759637	NonProperStrand	1	chr17	39847248	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr9	103676728	103676860	SINE	B2_Mm1a	B2	chr9B2_Mm1a103676725	NonProperStrand	1	chr3	108382613	108382631	protein_coding	Taf13	intron	ENSMUSG00000048100	ProperStrand	20	1	-inf
chr6	56753398	56753907	LINE	L1MB3	L1	chr6L1MB356753762	ProperStrand	3	chr6	56753900	56757345	LINE	Lx7	L1	chr6Lx756757105	ProperStrand	3	3	-inf
chr1	150362297	150362330	LINE	L1Md_F2	L1	chr1L1Md_F2150362008	ProperStrand	1	chr4	107171162	107171227	protein_coding	Glis1	intron	ENSMUSG00000034762	NonProperStrand	44	1	-inf
chr4	55530003	55530055	SINE	B1_Mus1	Alu	chr4B1_Mus155529941	NonProperStrand	1	chr5	93121780	93121827	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	1	-inf
chr2	167298615	167298720	protein_coding	Slc9a8	intron	ENSMUSG00000039463	NonProperStrand	7	chr2	167309263	167309315	protein_coding	Spata2	exon	ENSMUSG00000047030	ProperStrand	27	1	-18.0855
chr12	15207748	15207768	LINE	Lx5	L1	chr12Lx515207231	ProperStrand	1	chr17	39848200	39848294	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr18	68319389	68319481	protein_coding	D18Ertd653e	intron	ENSMUSG00000024544	ProperStrand	95	chr12	79548357	79548423	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-6.0071
chr7	16247090	16247106	LINE	L1Md_F2	L1	chr7L1Md_F216246890	ProperStrand	1	chr9	123462033	123462112	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	133192124	133192185	protein_coding	Zdhhc18	intron	ENSMUSG00000037553	NonProperStrand	56	chr4	133192256	133194409	pseudogene	Gm13213	.	ENSMUSG00000083885	NonProperStrand	3	1	-18.3539
chr12	105639282	105639382	LTR	MERVL_2A-int	ERVL	chr12MERVL_2A-int105638613	ProperStrand	6	chr12	105641175	105641265	LTR	MERVL_2A-int	ERVL	chr12MERVL_2A-int105641138	ProperStrand	5	3	-inf
chr3	142828937	142829027	LINE	L1_Mus4	L1	chr3L1_Mus4142828262	ProperStrand	2	chr3	142821627	142828903	LTR	ERVL-B4-int	ERVL	chr3ERVL-B4-int142821617	NonProperStrand	3	2	-inf
chr14	61185877	61185969	LTR	IAPEz-int	ERVK	chr14IAPEz-int61184062	NonProperStrand	5	chr17	39847659	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr11	88680017	88680052	SINE	B2_Mm1t	B2	chr11B2_Mm1t88680022	ProperStrand	6	chr11	88673031	88673090	SINE	PB1D7	Alu	chr11PB1D788673048	NonProperStrand	1	1	-inf
chr13	59727018	59727086	protein_coding-noncoding	Naa35	utr5	ENSMUSG00000021555	ProperStrand	6	chr16	22265869	22265927	protein_coding	Tra2b	utr5	ENSMUSG00000022858	ProperStrand	57	1	-16.9489
chr11	106272661	106272757	protein_coding	Ern1	intron	ENSMUSG00000020715	ProperStrand	17	chr13	32298162	32298197	protein_coding	Gmds	intron	ENSMUSG00000038372	ProperStrand	50	1	-14.9580
chr2	121358800	121358832	protein_coding-noncoding	Wdr76	utr5	ENSMUSG00000027242	ProperStrand	1	chr2	121360918	121361113	protein_coding	Wdr76	intron	ENSMUSG00000027242	ProperStrand	8	1	-inf
chr8	85042549	85042646	LTR	RLTR12B	ERVK	chr8RLTR12B85042390	ProperStrand	2	chr9	123461932	123461975	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr17	39846166	39846194	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr9	72860588	72860696	protein_coding	Ccpg1	exon	ENSMUSG00000034563	ProperStrand	1	1	-inf
chr10	99006147	99006247	LINE	L1MA9	L1	chr10L1MA999006153	ProperStrand	1	chr10	99005935	99006025	Simple_repeat	(TCC)n	Simple_repeat	chr10(TCC)n99005827	ProperStrand	1	1	-inf
chr10	122565387	122565487	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr5	151583439	151583529	protein_coding	Pds5b	intron	ENSMUSG00000034021	ProperStrand	3	1	-18.8823
chr9	59670696	59671595	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr11	5334984	5335056	protein_coding	Znrf3	intron	ENSMUSG00000041961	ProperStrand	102	1	-5.2493
chr17	39848036	39848066	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	142862298	142862314	protein_coding	Pdpn	intron	ENSMUSG00000028583	NonProperStrand	1	1	-inf
chr13	48881079	48885307	LINE	L1MD2	L1	chr13L1MD248881574	ProperStrand	1	chr17	39843813	39843856	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr13	54091282	54092433	LTR	MYSERV6-int	ERVK	chr13MYSERV6-int54091295	NonProperStrand	5	chr13	54089031	54091284	Simple_repeat	(CAT)n	Simple_repeat	chr13(CAT)n54090994	ProperStrand	4	4	-inf
chr2	10389770	10389804	miRNA	AL772216.3	.	ENSMUSG00000077131	ProperStrand	1	chr2	10389653	10389771	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-inf
chr10	7126098	7126115	LINE	L1Md_F2	L1	chr10L1Md_F27122765	ProperStrand	8	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-11.9789
chr19	7480097	7480157	LTR	MuRRS4-int	ERV1	chr19MuRRS4-int7479977	NonProperStrand	1	chr5	30060662	30060763	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	1	-inf
chr6	54825362	54825499	protein_coding	Znrf2	intron	ENSMUSG00000058446	ProperStrand	19	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.9562
chr10	34602108	34602198	LINE	L1MA8	L1	chr10L1MA834602066	ProperStrand	1	chr10	34602439	34602539	LINE	L1_Mus2	L1	chr10L1_Mus234602197	ProperStrand	1	1	-inf
chr17	39846325	39846384	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	12163677	12163726	pseudogene	Gm11847	.	ENSMUSG00000060989	ProperStrand	1	1	-inf
chr17	39847847	39847887	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	45760827	45760846	SINE	B1_Mur4	Alu	chr17B1_Mur445760812	NonProperStrand	2	1	-5.4040
chr9	21755753	21755796	SINE	B3	B2	chr9B321755686	NonProperStrand	4	chr9	123461904	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr19	38962628	38962718	protein_coding	Tbc1d12	intron	ENSMUSG00000048720	NonProperStrand	4	chr19	47472890	47472990	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	NonProperStrand	8	1	-inf
chr5	107458649	107458785	SINE	B4	B4	chr5B4107458521	ProperStrand	1	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-inf
chr1	183152992	183153082	SINE	B3	B2	chr1B3183152914	NonProperStrand	1	chr1	183153135	183153235	SINE	ID_B1	B4	chr1ID_B1183153115	NonProperStrand	1	1	-inf
chr2	10293168	10293258	lincRNA	Gm13261	intron	ENSMUSG00000086748	ProperStrand	2	chr2	127049475	127049575	protein_coding	Snrnp200	intron	ENSMUSG00000003660	ProperStrand	16	1	-inf
chr9	123461922	123461975	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	84908879	84908978	protein_coding	Fam69c	exon	ENSMUSG00000047992	ProperStrand	3	1	-7.0114
chr13	12714382	12714465	lincRNA	Gpr137b-ps	intron	ENSMUSG00000075118	NonProperStrand	8	chr2	52868497	52868553	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	1	-13.9712
chr13	67342855	67342894	SINE	B4	B4	chr13B467342811	ProperStrand	3	chr4	123115395	123115501	protein_coding	Macf1	intron	ENSMUSG00000028649	ProperStrand	35	2	-20.4371
chr2	22744864	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	142905441	142905605	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-3.2242
chr2	22744878	22744906	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-6.8418
chr6	20739539	20739629	LINE	L1Md_F2	L1	chr6L1Md_F220739195	ProperStrand	1	chr6	20739864	20739964	LINE	L1_Mus2	L1	chr6L1_Mus220739865	ProperStrand	1	1	-inf
chr1	74292871	74293061	protein_coding	Arpc2	intron	ENSMUSG00000006304	NonProperStrand	20	chr8	123102422	123102693	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	1	-11.6622
chr5	65686776	65686819	protein_coding	Rfc1	intron	ENSMUSG00000029191	ProperStrand	34	chr13	113994180	113994265	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-9.6300
chr4	55392410	55392444	protein_coding	Rad23b	intron	ENSMUSG00000028426	ProperStrand	31	chr11	101443613	101443644	protein_coding	Tmem106a	utr5	ENSMUSG00000034947	NonProperStrand	1	1	-inf
chr16	21982268	21982319	protein_coding	Liph	intron	ENSMUSG00000044626	ProperStrand	24	chr13	97190561	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.9352
chr19	53605248	53605348	protein_coding	Dusp5	intron	ENSMUSG00000034765	ProperStrand	10	chr3	31205971	31206061	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	23	2	-21.2444
chr9	17738710	17738800	LINE	L1Md_A	L1	chr9L1Md_A17738725	ProperStrand	1	chr9	17738899	17738999	LINE	Lx	L1	chr9Lx17738923	ProperStrand	1	1	-inf
chr4	25704648	25704748	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	chr3	31205952	31206042	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	23	8	-inf
chr5	146261022	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	10032389	10034014	protein_coding	Cspp1	intron	ENSMUSG00000056763	NonProperStrand	8	1	-9.1415
chr17	39847641	39847693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr17	70963690	70963781	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	1	-8.7290
chr1	154988938	154989007	protein_coding	Lamc2	intron	ENSMUSG00000026479	ProperStrand	2	chr18	20740930	20740989	protein_coding	Dsg2	intron	ENSMUSG00000044393	NonProperStrand	42	1	-21.2163
chr17	39848099	39848143	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	88147078	88148178	protein_coding	Spic	intron	ENSMUSG00000004359	NonProperStrand	1	1	-inf
chr3	122166681	122166697	protein_coding	Bcar3	intron	ENSMUSG00000028121	NonProperStrand	10	chr13	35939881	35940008	protein_coding	Cdyl	intron	ENSMUSG00000059288	NonProperStrand	16	1	-18.3018
chr17	39847164	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	53199865	53199940	SINE	B1_Mur2	Alu	chr19B1_Mur253199781	ProperStrand	1	1	-inf
chr6	68197874	68197974	LTR	MMTV-int	ERVK	chr6MMTV-int68193706	ProperStrand	1	chr6	67272331	67272421	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	1	-inf
chr11	95389175	95390346	LTR	RMER19B	ERVK	chr11RMER19B95389809	NonProperStrand	2	chr11	95387900	95389142	SINE	B3	B2	chr11B395388973	NonProperStrand	1	1	-inf
chr17	39847246	39847266	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	120586116	120588747	SINE	MIR	MIR	chr8MIR120586106	ProperStrand	1	1	-inf
chr1	100180180	100180222	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr8	34951621	34951713	protein_coding	Rbpms	intron	ENSMUSG00000031586	ProperStrand	74	1	-10.2424
chr17	74410308	74410368	LINE	L1Md_F2	L1	chr17L1Md_F274409172	ProperStrand	2	chr17	39846411	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39847006	39847067	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	4775603	4775654	protein_coding	Mrpl15	intron	ENSMUSG00000033845	ProperStrand	5	1	-3.1907
chr3	19242005	19242053	LINE	L1Md_F2	L1	chr3L1Md_F219241833	NonProperStrand	1	chr6	122713559	122713617	protein_coding	Slc2a3	intron	ENSMUSG00000003153	NonProperStrand	31	1	-inf
chr13	80827979	80828040	LINE	L1Md_A	L1	chr13L1Md_A80827932	NonProperStrand	1	chr17	39847230	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	156685459	156685509	antisense	5430405H02Rik	.	ENSMUSG00000085741	NonProperStrand	10	chr2	156680062	156680084	protein_coding	Tgif2	utr3	ENSMUSG00000062175	ProperStrand	38	1	-16.6421
chr17	39848099	39848118	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	107226862	107226982	SINE	B3	B2	chr7B3107226817	ProperStrand	1	1	-inf
chr11	75762731	75762805	LINE	L1M4b	L1	chr11L1M4b75762692	NonProperStrand	1	chr11	75763043	75763112	LINE	L1M4b	L1	chr11L1M4b75763051	NonProperStrand	1	1	-inf
chr17	39843621	39843729	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr6	122713567	122713616	protein_coding	Slc2a3	intron	ENSMUSG00000003153	NonProperStrand	31	1	-3.7590
chr7	100344962	100345058	LINE	L1MA8	L1	chr7L1MA8100344667	ProperStrand	2	chr2	5379307	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr17	60394698	60394788	LINE	Lx7	L1	chr17Lx760394462	NonProperStrand	1	chr16	98063511	98063611	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	1	-inf
chr11	80470391	80470634	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	chr13	97190586	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.2015
chr5	123743647	123743673	antisense	Gm15857	.	ENSMUSG00000087063	ProperStrand	7	chr11	117854244	117854362	protein_coding	Pgs1	intron	ENSMUSG00000017715	ProperStrand	51	1	-16.8255
chr2	164016796	164016834	antisense	A730032A03Rik	.	ENSMUSG00000085649	ProperStrand	13	chr7	122992189	122992257	protein_coding	Sox6	intron	ENSMUSG00000051910	NonProperStrand	155	1	-13.2356
chr1	61490269	61490338	LTR	RMER19B	ERVK	chr1RMER19B61489864	ProperStrand	1	chr4	150382672	150382751	protein_coding	Per3	intron	ENSMUSG00000028957	NonProperStrand	46	1	-inf
chr12	102579034	102579112	LINE	L1_Mus1	L1	chr12L1_Mus1102578589	ProperStrand	1	chr17	39847652	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	110267249	110269725	LINE	Lx6	L1	chr5Lx6110269486	NonProperStrand	3	chr5	66440018	66440118	protein_coding	Rbm47	intron	ENSMUSG00000070780	ProperStrand	141	1	-16.6927
chr16	57391176	57391624	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr13	44869574	44869704	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-4.2626
chr13	70606616	70606724	LINE	L1Md_F2	L1	chr13L1Md_F270604892	ProperStrand	10	chr9	123462126	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr7	79669370	79669407	LINE	L1Md_A	L1	chr7L1Md_A79666159	NonProperStrand	8	chr14	57919954	57920055	protein_coding	Cryl1	intron	ENSMUSG00000021947	ProperStrand	31	1	-17.5490
chr5	33410920	33411010	LTR	MLT1C	MaLR	chr5MLT1C33410706	NonProperStrand	4	chr5	33411564	33411664	LTR	MLT1C	MaLR	chr5MLT1C33411342	NonProperStrand	4	4	-inf
chr1	36093086	36093164	LTR	MERVL-int	ERVL	chr1MERVL-int36088814	ProperStrand	54	chr1	36077046	36077117	LTR	RLTR14	ERV1	chr1RLTR1436077037	ProperStrand	1	1	-inf
chr15	79794469	79804059	LTR	RLTR4_MM-int	ERV1	chr15RLTR4_MM-int79803360	ProperStrand	1	chr15	79794356	79794456	protein_coding	Cbx7	intron	ENSMUSG00000053411	ProperStrand	55	1	-inf
chr13	111553181	111553276	LINE	L1MC5	L1	chr13L1MC5111553057	ProperStrand	2	chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chrX	144352672	144352692	LTR	RMER19A	ERVK	chrXRMER19A144352170	NonProperStrand	1	chr12	80253351	80253433	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	1	-inf
chr2	32961792	32962060	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	chr9	9011392	9011423	protein_coding	Arhgap42	exon	ENSMUSG00000050730	ProperStrand	30	1	-10.2996
chr7	3219236	3219262	miRNA	Mir292	.	ENSMUSG00000078041	ProperStrand	8	chr13	44823510	44848360	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	2	-20.3862
chr8	25552093	25552135	LINE	Lx8	L1	chr8Lx825551582	NonProperStrand	4	chr8	25550051	25550149	lincRNA	Gm16625	exon	ENSMUSG00000084900	ProperStrand	52	2	-inf
chr9	110281285	110281335	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr14	52075714	52077477	protein_coding	Vmn2r89	intron	ENSMUSG00000070448	NonProperStrand	29	1	-9.0241
chr10	104247245	104247345	LINE	L1_Mur3	L1	chr10L1_Mur3104246836	NonProperStrand	1	chr10	104247382	104247472	LTR	RMER17A2	ERVK	chr10RMER17A2104247340	NonProperStrand	1	1	-inf
chr8	128528746	128528836	protein_coding	Kcnk1	intron	ENSMUSG00000033998	ProperStrand	1	chr15	84011224	84011324	protein_coding	Pnpla3	intron	ENSMUSG00000041653	ProperStrand	1	1	-inf
chr9	123462076	123462151	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	58891357	58891442	protein_coding	AI314180	intron	ENSMUSG00000050812	ProperStrand	16	2	-5.9898
chr17	39846805	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	128322950	128323052	protein_coding	Foxm1	exon	ENSMUSG00000001517	NonProperStrand	9	2	-3.9140
chr14	19802527	19803050	LINE	L1_Mus4	L1	chr14L1_Mus419802456	ProperStrand	3	chr17	39846932	39847047	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	37047534	37048432	LTR	RLTR31B_Mm	ERVK	chr17RLTR31B_Mm37047349	ProperStrand	7	chr17	37048446	37048567	SINE	B2_Mm2	B2	chr17B2_Mm237048471	NonProperStrand	12	7	-inf
chr6	49456131	49456187	LTR	MTE2b	MaLR	chr6MTE2b49456048	NonProperStrand	1	chr18	57547113	57547179	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	1	-inf
chr11	88999778	88999955	LTR	MLT1C	MaLR	chr11MLT1C88999802	NonProperStrand	16	chr11	88999686	88999776	SINE	ID_B1	B4	chr11ID_B188999587	NonProperStrand	28	16	-inf
chr6	44206933	44207023	LINE	L1_Mus1	L1	chr6L1_Mus144206866	ProperStrand	1	chrX	103198632	103198732	protein_coding	Magt1	intron	ENSMUSG00000031232	ProperStrand	32	1	-inf
chr5	76560263	76560361	LTR	RLTR28	ERVL	chr5RLTR2876559889	ProperStrand	1	chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	61428991	61429096	protein_coding	Mipep	intron	ENSMUSG00000021993	NonProperStrand	22	chr7	3297766	3297784	protein_coding	Myadm	utr3	ENSMUSG00000068566	ProperStrand	30	1	-15.4699
chr17	70963687	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	114553267	114553354	protein_coding	Ttyh2	intron	ENSMUSG00000034714	NonProperStrand	33	1	-7.3976
chr8	79673925	79673974	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	chr2	177206593	177206698	pseudogene	Gm14404	.	ENSMUSG00000082343	NonProperStrand	1	1	-inf
chr11	30834329	30834362	protein_coding	Erlec1	intron	ENSMUSG00000020311	NonProperStrand	8	chr16	35079097	35079210	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	1	-13.9712
chr11	50163578	50163606	LTR	MTA_Mm-int	MaLR	chr11MTA_Mm-int50163165	ProperStrand	1	chr17	39847510	39847548	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	107012902	107012953	SINE	B1_Mm	Alu	chr11B1_Mm107012792	NonProperStrand	7	chr9	123461882	123461923	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr15	91096074	91096164	LINE	L1MCa	L1	chr15L1MCa91095598	ProperStrand	1	chr15	91096168	91096268	LINE	L1MCa	L1	chr15L1MCa91096192	ProperStrand	1	1	-inf
chr1	27595316	27595406	LINE	Lx4A	L1	chr1Lx4A27595084	ProperStrand	1	chr1	27595616	27595716	LINE	Lx5	L1	chr1Lx527595553	ProperStrand	1	1	-inf
chr17	52139903	52139921	LTR	MTD	MaLR	chr17MTD52139642	ProperStrand	1	chr16	20729214	20734274	protein_coding	Thpo	intron	ENSMUSG00000022847	ProperStrand	5	1	-inf
chr6	112924835	112924935	DNA	Charlie1a	MER1_type	chr6Charlie1a112924759	NonProperStrand	1	chr6	112924685	112924775	SINE	ID4_	ID	chr6ID4_112924683	NonProperStrand	1	1	-inf
chr6	3201470	3201501	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	74854468	74857669	protein_coding	Smg6	intron	ENSMUSG00000038290	NonProperStrand	52	1	-3.1519
chr6	3200795	3200877	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	30461121	30462968	protein_coding	1700025E21Rik	intron	ENSMUSG00000029784	ProperStrand	2	1	-10.1342
chr13	112578195	112578276	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr6	83176109	83176127	protein_coding	Slc4a5	intron	ENSMUSG00000068323	ProperStrand	48	1	-4.6326
chr4	9627683	9627764	SINE	B1_Mus2	Alu	chr4B1_Mus29627629	ProperStrand	1	chr9	123462125	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	100180182	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr7	134813075	134813128	protein_coding	Bcl7c	intron	ENSMUSG00000030814	NonProperStrand	23	1	-12.6068
chr1	109528060	109528160	LINE	L1Md_T	L1	chr1L1Md_T109524837	NonProperStrand	1	chr1	109528182	109528272	LINE	L1Md_T	L1	chr1L1Md_T109528180	NonProperStrand	1	1	-inf
chr9	78367244	78367726	SINE	B2_Mm1t	B2	chr9B2_Mm1t78367196	NonProperStrand	39	chr5	100042276	100042355	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	NonProperStrand	55	1	-13.0678
chr17	39846660	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	107059681	107059761	protein_coding	Car7	intron	ENSMUSG00000031883	ProperStrand	12	2	-3.1058
chr18	38597873	38597983	protein_coding	Ndfip1	intron	ENSMUSG00000024425	NonProperStrand	104	chr11	50171297	50171317	protein_coding	Cby3	utr5	ENSMUSG00000050087	ProperStrand	6	1	-15.7120
chr2	29481463	29481547	protein_coding	Rapgef1	intron	ENSMUSG00000039844	ProperStrand	77	chr17	63097142	63097188	protein_coding	Efna5	intron	ENSMUSG00000048915	ProperStrand	104	1	-10.4158
chr10	40258495	40258600	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr14	73826352	73826369	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n73826340	ProperStrand	4	1	-10.9810
chr9	20911436	20911455	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	20	chr18	75536048	75536147	protein_coding	Smad7	intron	ENSMUSG00000025880	NonProperStrand	11	1	-17.7689
chr12	8721802	8724099	protein_coding	Pum2	intron	ENSMUSG00000020594	ProperStrand	67	chr15	79970765	79970843	protein_coding	Tab1	intron	ENSMUSG00000022414	NonProperStrand	44	1	-12.4265
chr17	4082761	4082861	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	13830245	13830335	LINE	Lx5	L1	chr2Lx513830075	NonProperStrand	1	1	-inf
chr17	39846471	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	19067074	19067146	protein_coding	Iglc3	intron	ENSMUSG00000076931	NonProperStrand	3	3	-inf
chr7	33604484	33604574	LTR	ORR1B1-int	MaLR	chr7ORR1B1-int33604169	NonProperStrand	1	chr7	33604869	33604969	LTR	RMER19B	ERVK	chr7RMER19B33604681	NonProperStrand	1	1	-inf
chr3	90220975	90220991	protein_coding	Ints3	intron	ENSMUSG00000027933	NonProperStrand	20	chr6	115805578	115807018	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-13.0704
chr7	4747290	4747380	SINE	B2_Mm1a	B2	chr7B2_Mm1a4747249	ProperStrand	1	chr7	4747147	4747247	SINE	B2_Mm1t	B2	chr7B2_Mm1t4747060	ProperStrand	1	1	-inf
chr13	49604137	49604165	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	chr11	35376171	35376280	protein_coding	Slit3	intron	ENSMUSG00000056427	NonProperStrand	22	1	-13.0497
chr17	39848161	39848197	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	48452043	48452902	protein_coding	Tex10	intron	ENSMUSG00000028345	ProperStrand	22	1	-3.1941
chr9	123461876	123461923	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr13	108671267	108671372	protein_coding	Zswim6	intron	ENSMUSG00000032846	NonProperStrand	5	1	-5.8308
chr8	85876868	85876968	protein_coding	4933434I20Rik	intron	ENSMUSG00000035057	ProperStrand	9	chr8	85876759	85876849	pseudogene	Gm15660	.	ENSMUSG00000082136	ProperStrand	2	2	-inf
chr1	84491293	84491383	protein_coding	Dner	exon	ENSMUSG00000036766	NonProperStrand	9	chr1	84495719	84495819	protein_coding	Dner	intron	ENSMUSG00000036766	ProperStrand	50	1	-16.2783
chr14	75771966	75772022	LTR	MLT1F-int	MaLR	chr14MLT1F-int75771769	NonProperStrand	1	chr15	72994524	72994593	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	9	1	-inf
chr14	20517443	20517543	LINE	L1_Mur3	L1	chr14L1_Mur320517048	NonProperStrand	1	chr14	20517990	20518080	LTR	RLTR13D1	ERVK	chr14RLTR13D120518000	NonProperStrand	2	1	-inf
chr6	43336256	43336346	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	chr4	119119275	119119375	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-8.5969
chr17	39844643	39844753	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr1	134593425	134593442	protein_coding	Nfasc	intron	ENSMUSG00000026442	ProperStrand	7	1	-6.7494
chr11	116674109	116674173	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	93	chr2	5379266	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.7213
chr9	64154444	64154544	SINE	B1_Mus1	Alu	chr9B1_Mus164154371	NonProperStrand	1	chr9	64154541	64154631	protein_coding	Dis3l	utr3	ENSMUSG00000032396	ProperStrand	29	1	-inf
chr12	78350926	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	84774363	84774435	protein_coding	Jam2	utr5	ENSMUSG00000053062	ProperStrand	120	1	-4.5519
chr18	31842368	31842437	protein_coding	Sap130	intron	ENSMUSG00000024260	ProperStrand	80	chr19	37007228	37007307	protein_coding	Btaf1	intron	ENSMUSG00000040565	ProperStrand	12	1	-14.7342
chr19	8724915	8724939	SINE	B3A	B2	chr19B3A8724791	NonProperStrand	14	chr11	30773995	30774103	protein_coding	Psme4	intron	ENSMUSG00000040850	ProperStrand	35	1	-16.0681
chr3	146408356	146408456	protein_coding-noncoding	Prkacb	utr3	ENSMUSG00000005034	NonProperStrand	1	chr3	146408243	146408333	protein_coding	Prkacb	exon	ENSMUSG00000005034	NonProperStrand	52	1	-inf
chr6	73367558	73367648	LINE	L1_Mur2	L1	chr6L1_Mur273367383	NonProperStrand	1	chr6	73367254	73367354	LINE	Lx5	L1	chr6Lx573366554	ProperStrand	1	1	-inf
chr17	46872468	46872543	lincRNA	Gm16736	intron	ENSMUSG00000086673	NonProperStrand	106	chr17	46876613	46886700	protein_coding	Cnpy3	intron	ENSMUSG00000023973	ProperStrand	25	3	-inf
chr19	7458532	7458596	SINE	B1F	Alu	chr19B1F7458489	ProperStrand	2	chr19	7449019	7449110	protein_coding	AI846148	exon	ENSMUSG00000024970	ProperStrand	33	2	-inf
chr5	117098664	117098754	LTR	LTR16A	ERVL	chr5LTR16A117098601	ProperStrand	11	chr5	117098507	117098609	Simple_repeat	(CATA)n	Simple_repeat	chr5(CATA)n117098451	NonProperStrand	7	7	-inf
chr9	20519209	20519280	protein_coding	Olfm2	intron	ENSMUSG00000032172	ProperStrand	64	chr9	21086142	21086206	protein_coding	Kri1	intron	ENSMUSG00000035047	ProperStrand	44	1	-12.5187
chr1	178984301	178984337	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr11	97715185	97715201	protein_coding	Fbxo47	utr3	ENSMUSG00000070336	ProperStrand	56	1	-8.9513
chr17	35149785	35151763	protein_coding-noncoding	Vars	utr5	ENSMUSG00000007029	NonProperStrand	16	chr17	35149988	35151672	protein_coding	Vars	intron	ENSMUSG00000007029	NonProperStrand	53	16	-inf
chr12	54696820	54696920	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr8	105216640	105216685	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	1	-8.4286
chr10	122565883	122565983	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr14	33967460	33967594	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	2	-17.7024
chr18	33847414	33847481	LTR	RLTR22_Mur	ERVK	chr18RLTR22_Mur33847404	ProperStrand	1	chr1	136364891	136364952	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-inf
chr11	102240602	102240702	LTR	ORR1A4	MaLR	chr11ORR1A4102240475	ProperStrand	1	chr11	102240224	102240314	LTR	ORR1D1	MaLR	chr11ORR1D1102240160	ProperStrand	1	1	-inf
chrX	143677126	143677226	LINE	L1_Mm	L1	chrXL1_Mm143677129	NonProperStrand	1	chrX	143677617	143677707	SINE	B3A	B2	chrXB3A143677469	ProperStrand	1	1	-inf
chr1	154615835	154615925	protein_coding-noncoding	Arpc5	utr5	ENSMUSG00000008475	NonProperStrand	1	chr1	154615287	154615387	protein_coding	Arpc5	intron	ENSMUSG00000008475	NonProperStrand	2	1	-inf
chr6	142950233	142950333	SINE	B3	B2	chr6B3142950230	ProperStrand	3	chr6	142950347	142950438	Simple_repeat	(CGTG)n	Simple_repeat	chr6(CGTG)n142950347	NonProperStrand	3	3	-inf
chr10	21831006	21831097	LTR	RLTR22_Mus	ERVK	chr10RLTR22_Mus21830814	NonProperStrand	1	chr10	78445112	78445129	protein_coding	Olfr1352	intron	ENSMUSG00000046493	NonProperStrand	8	1	-inf
chr3	117286214	117286321	protein_coding	4833424O15Rik	intron	ENSMUSG00000033342	ProperStrand	4	chr2	5379299	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.1399
chr2	61757339	61757439	LINE	L1Md_F2	L1	chr2L1Md_F261757088	NonProperStrand	1	chr2	61757537	61757627	LINE	L1Md_F2	L1	chr2L1Md_F261757440	NonProperStrand	1	1	-inf
chr1	100180184	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr1	72255081	72255191	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-9.9880
chr17	26655713	26655824	LINE	L1M4	L1	chr17L1M426655533	ProperStrand	2	chr17	39847575	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	87774473	87774523	SINE	B1_Mm	Alu	chr11B1_Mm87774395	ProperStrand	1	chr9	123462111	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	85416274	85416374	protein_coding-noncoding	Bcas3	utr5	ENSMUSG00000059439	ProperStrand	3	chr11	85416180	85416270	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	3	-inf
chr18	50030475	50030552	protein_coding	Dmxl1	intron	ENSMUSG00000037416	ProperStrand	116	chr17	84970902	84970953	protein_coding	Plekhh2	intron	ENSMUSG00000040852	ProperStrand	89	1	-9.9063
chr7	101378735	101378765	SINE	B1_Mm	Alu	chr7B1_Mm101378669	NonProperStrand	1	chr17	33955200	33955254	protein_coding	Kank3	exon	ENSMUSG00000042099	NonProperStrand	107	1	-inf
chr13	72910929	72911019	LINE	L1M2	L1	chr13L1M272910872	NonProperStrand	1	chr13	72911101	72911201	SINE	B1_Mus1	Alu	chr13B1_Mus172911109	NonProperStrand	1	1	-inf
chr1	120022719	120022772	LINE	L1Md_T	L1	chr1L1Md_T120018690	ProperStrand	1	chr17	39847838	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	146261160	146261226	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	24665966	24666043	protein_coding	Rab26	utr3	ENSMUSG00000079657	NonProperStrand	3	1	-11.3685
chr8	64794309	64794637	LINE	L1_Mur2	L1	chr8L1_Mur264794288	NonProperStrand	2	chr8	64794745	64794911	LINE	L1_Mur2	L1	chr8L1_Mur264794692	NonProperStrand	2	2	-inf
chr13	9834332	9834384	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr12	78350926	78351008	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-3.1385
chr6	3201499	3201542	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr18	50128976	50129030	SINE	B1_Mm	Alu	chr18B1_Mm50128911	NonProperStrand	1	1	-inf
chr6	3201509	3201554	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	4197658	4197713	protein_coding	Rad9	intron	ENSMUSG00000024824	NonProperStrand	2	1	-10.1342
chrX	105494924	105494943	LINE	L1Md_F2	L1	chrXL1Md_F2105494013	ProperStrand	1	chr17	39847028	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	124567360	124567460	LINE	L1MCa	L1	chr3L1MCa124567289	ProperStrand	1	chr12	58167491	58167581	protein_coding	Slc25a21	intron	ENSMUSG00000035472	NonProperStrand	9	1	-inf
chr2	39144994	39145041	LINE	L1_Mm	L1	chr2L1_Mm39144227	ProperStrand	2	chr17	39846708	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr7	113241601	113241701	LINE	L1MA4A	L1	chr7L1MA4A113241616	ProperStrand	1	chr7	113241487	113241577	LINE	Lx	L1	chr7Lx113237792	ProperStrand	9	1	-inf
chr11	77777841	77777869	protein_coding	Sez6	intron	ENSMUSG00000000632	ProperStrand	109	chr12	112126753	112126771	protein_coding	Cinp	intron	ENSMUSG00000021276	ProperStrand	2	1	-18.3348
chr17	39846747	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	46855405	46855505	LTR	MTD	MaLR	chr7MTD46855310	ProperStrand	7	2	-4.6854
chr12	51744811	51744878	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	chr13	44869568	44869617	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.7910
chr17	46510968	46511208	LTR	MYSERV6-int	ERVK	chr17MYSERV6-int46510415	ProperStrand	1	chr17	46522237	46522556	protein_coding	Zfp318	intron	ENSMUSG00000015597	NonProperStrand	17	1	-inf
chr12	59040423	59040513	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr7	116156355	116156455	protein_coding	Tub	intron	ENSMUSG00000031028	NonProperStrand	50	1	-10.3966
chr6	3201487	3201534	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	130480376	130480394	protein_coding	Arhgap17	intron	ENSMUSG00000030766	NonProperStrand	2	1	-10.1342
chr7	127980142	127980208	SINE	ID_B1	B4	chr7ID_B1127980129	ProperStrand	9	chr2	122028883	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	1	-16.8192
chr14	50926909	50926959	LTR	RLTR22_Mus	ERVK	chr14RLTR22_Mus50926818	NonProperStrand	1	chr14	50926627	50926667	SINE	ID_B1	B4	chr14ID_B150926597	NonProperStrand	1	1	-inf
chr4	136734203	136734301	SINE	MIR	MIR	chr4MIR136734193	NonProperStrand	1	chr4	136732570	136732616	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n136732513	NonProperStrand	1	1	-inf
chr1	17746732	17746748	protein_coding	Crispld1	intron	ENSMUSG00000025776	NonProperStrand	4	chr13	44869572	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.0813
chr11	109011664	109011769	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	131573835	131573871	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	2	-5.4772
chr11	31360788	31360813	LINE	L1_Mus3	L1	chr11L1_Mus331357403	ProperStrand	2	chr17	39847736	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr4	53860712	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr5	122032416	122032488	protein_coding	Aldh2	intron	ENSMUSG00000029455	ProperStrand	59	1	-9.4609
chr17	6232490	6232580	protein_coding	Tulp4	exon	ENSMUSG00000034377	ProperStrand	56	chr17	6515380	6515480	protein_coding	Gm2792	intron	ENSMUSG00000079735	ProperStrand	2	1	-19.4902
chr9	65196569	65196645	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr9	56223578	56223888	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-7.5395
chr2	3410873	3410893	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	chr17	5345380	5345397	protein_coding	Arid1b	utr3	ENSMUSG00000069729	NonProperStrand	13	1	-17.2573
chr17	24964584	24964634	protein_coding	4930528F23Rik	intron	ENSMUSG00000024155	NonProperStrand	27	chr5	150267507	150267567	protein_coding	4930588N13Rik	intron	ENSMUSG00000029660	ProperStrand	7	1	-18.0471
chr8	111815102	111815202	LINE	Lx7	L1	chr8Lx7111814930	ProperStrand	4	chr8	111815229	111815319	LTR	ORR1A2	MaLR	chr8ORR1A2111815203	NonProperStrand	5	4	-inf
chr5	5692846	5692897	protein_coding	Steap2	intron	ENSMUSG00000015653	ProperStrand	10	chr11	80987409	80987476	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	161	1	-13.7085
chr10	40258535	40258592	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	99768670	99768750	protein_coding	Ror1	utr5	ENSMUSG00000035305	ProperStrand	128	2	-6.5729
chr4	139198862	139200590	protein_coding	Aldh4a1	intron	ENSMUSG00000028737	ProperStrand	85	chr4	139211440	139212320	protein_coding	Tas1r2	intron	ENSMUSG00000028738	ProperStrand	90	2	-16.5296
chr5	121296154	121296282	LTR	RLTR18-int	ERVK	chr5RLTR18-int121295942	ProperStrand	1	chr5	121296804	121296835	LTR	RMER6A	ERVK	chr5RMER6A121296755	NonProperStrand	1	1	-inf
chr1	192745573	192745687	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr17	39846419	39847157	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	9	-6.5904
chr7	96234516	96234569	Simple_repeat	(TC)n	Simple_repeat	chr7(TC)n96234523	ProperStrand	1	chr2	128615484	128617593	protein_coding	Mertk	intron	ENSMUSG00000014361	NonProperStrand	15	1	-inf
chr13	100729108	100729175	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	chr8	94060739	94060812	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	1	-11.0658
chr6	71955211	71955277	LTR	LTR16C	ERVL	chr6LTR16C71955207	ProperStrand	2	chr18	77779113	77779193	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-17.2783
chr10	20165107	20165227	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr16	4497143	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	1	-10.4893
chr17	39847786	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	115963994	115964260	SINE	B1_Mus2	Alu	chr11B1_Mus2115964140	NonProperStrand	1	1	-inf
chr14	21330344	21330438	protein_coding	Ppp3cb	intron	ENSMUSG00000021816	NonProperStrand	22	chr1	136364889	136364944	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-12.4128
chr8	109950552	109950608	SINE	B3A	B2	chr8B3A109950568	ProperStrand	1	chr1	59543706	59543723	protein_coding	Fzd7	utr3	ENSMUSG00000041075	NonProperStrand	8	1	-inf
chr16	23111300	23111431	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr18	36594924	36594942	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	1	-10.5344
chr6	35186545	35186562	protein_coding	Nup205	intron	ENSMUSG00000038759	NonProperStrand	9	chr6	93973532	93973656	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-10.1445
chr11	77277291	77277359	protein_coding	Coro6	utr5	ENSMUSG00000020836	ProperStrand	2	chr14	122343543	122343606	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-17.9152
chr2	177082565	177082688	LINE	L1Md_F2	L1	chr2L1Md_F2177082198	NonProperStrand	5	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr9	110977769	110977809	LTR	RLTR25A	ERVK	chr9RLTR25A110976895	ProperStrand	2	chr6	90724611	90724670	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	1	-17.0110
chr1	119491879	119491928	LINE	L1_Mm	L1	chr1L1_Mm119491580	NonProperStrand	1	chr1	119493022	119493092	SINE	RSINE1	B4	chr1RSINE1119492982	ProperStrand	1	1	-inf
chr5	111535406	111535425	lincRNA	Ttc28	intron	ENSMUSG00000033209	NonProperStrand	11	chr16	13928622	13928763	protein_coding	Mpv17l	intron	ENSMUSG00000022679	ProperStrand	42	1	-16.2438
chr9	57369222	57369240	protein_coding	Cox5a	intron	ENSMUSG00000000088	ProperStrand	2	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr19	9880368	9880433	LINE	L1VL2	L1	chr19L1VL29880197	NonProperStrand	4	chr17	39843836	39843891	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-8.4460
chr4	95846833	95846858	LINE	L1Md_A	L1	chr4L1Md_A95846210	ProperStrand	1	chr17	39846952	39847009	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr18	10052136	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	5	chr4	154296145	154296174	SINE	B1_Mus2	Alu	chr4B1_Mus2154296034	NonProperStrand	1	1	-inf
chr11	69853614	69855000	protein_coding	Dlg4	intron	ENSMUSG00000020886	NonProperStrand	14	chr9	123462115	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-9.4282
chr15	86729613	86729703	LTR	RMER15	ERVL	chr15RMER1586729535	NonProperStrand	1	chr15	86729879	86729979	LTR	RMER15	ERVL	chr15RMER1586729845	NonProperStrand	1	1	-inf
chr17	24470831	24470871	protein_coding	Abca17	intron	ENSMUSG00000035435	NonProperStrand	73	chr1	36588562	36588645	protein_coding	Ankrd23	exon	ENSMUSG00000067653	ProperStrand	1	1	-inf
chr17	56585520	56585618	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	chr1	63589510	63589542	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-6.0680
chr11	100808961	100809051	SINE	B3A	B2	chr11B3A100808955	NonProperStrand	1	chr11	100808856	100808956	SINE	ID_B1	B4	chr11ID_B1100808732	NonProperStrand	1	1	-inf
chr16	8726638	8726703	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr9	114671395	114671451	protein_coding	Cmtm7	intron	ENSMUSG00000032436	ProperStrand	11	1	-12.1260
chr1	58757183	58757277	LTR	RLTR11A2	ERVK	chr1RLTR11A258756784	NonProperStrand	3	chr11	75739254	75739402	protein_coding	Rph3al	utr5	ENSMUSG00000020847	NonProperStrand	157	2	-21.7656
chr8	51954398	51954498	Other	RMER1A	Other	chr8RMER1A51954204	ProperStrand	1	chr8	51954634	51954724	Other	RMER1A	Other	chr8RMER1A51954548	NonProperStrand	1	1	-inf
chr17	39846415	39846432	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	127972145	127972170	SINE	B1_Mur2	Alu	chr7B1_Mur2127972095	NonProperStrand	3	1	-4.3017
chr1	134632539	134632606	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr5	142960979	142961036	protein_coding	Radil	utr3	ENSMUSG00000029576	NonProperStrand	99	1	-8.3884
chr16	15736871	15737834	protein_coding	Prkdc	intron	ENSMUSG00000022672	NonProperStrand	18	chr9	123461802	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.2529
chr11	98104945	98105055	protein_coding	Cdk12	intron	ENSMUSG00000003119	NonProperStrand	35	chr17	35836678	35836714	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	1	-10.3985
chr17	6037844	6037955	protein_coding	Synj2	exon	ENSMUSG00000023805	ProperStrand	26	chr18	23980030	23980072	protein_coding	Mapre2	intron	ENSMUSG00000024277	NonProperStrand	17	1	-16.2795
chr1	122919828	122919928	DNA	RCHARR1	MER1_type	chr1RCHARR1122919745	NonProperStrand	1	chr1	122919593	122919683	SINE	B3A	B2	chr1B3A122919548	ProperStrand	1	1	-inf
chr1	103296415	103296515	DNA	MER2	MER2_type	chr1MER2103296419	NonProperStrand	1	chr1	103296725	103296815	LTR	MTEa	MaLR	chr1MTEa103296637	NonProperStrand	1	1	-inf
chr11	95714472	95714563	SINE	B1F	Alu	chr11B1F95714431	NonProperStrand	1	chr16	10395429	10395446	protein_coding	Tekt5	exon	ENSMUSG00000039179	ProperStrand	1	1	-inf
chr9	87461461	87461551	LINE	Lx8	L1	chr9Lx887461473	ProperStrand	1	chr9	87461275	87461375	LTR	MLT1C	MaLR	chr9MLT1C87461269	NonProperStrand	1	1	-inf
chr8	3417256	3417316	protein_coding	Arhgef18	intron	ENSMUSG00000004568	ProperStrand	170	chr11	75300503	75300540	protein_coding	Prpf8	utr5	ENSMUSG00000020850	NonProperStrand	28	1	-11.4737
chr11	61577035	61577135	LTR	RMER5	ERV1	chr11RMER561576978	NonProperStrand	4	chr11	61577199	61577289	SINE	B1_Mus1	Alu	chr11B1_Mus161577124	ProperStrand	4	4	-inf
chr6	56915031	56915091	LINE	L1Md_F2	L1	chr6L1Md_F256910091	ProperStrand	4	chr17	39847183	39847240	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr5	123445787	123445828	lincRNA	A930024E05Rik	intron	ENSMUSG00000056735	ProperStrand	7	chr5	123454568	123454674	protein_coding	Kdm2b	intron	ENSMUSG00000029475	NonProperStrand	97	2	-21.9402
chr17	31961422	31961502	DNA	RCHARR1	MER1_type	chr17RCHARR131961239	ProperStrand	5	chr17	39846456	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr6	88355592	88358551	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	chr11	65697137	65697202	protein_coding	Dnahc9	intron	ENSMUSG00000056752	ProperStrand	54	1	-9.1202
chr11	102567954	102568087	LTR	ORR1A2	MaLR	chr11ORR1A2102567754	ProperStrand	37	chr8	112019706	112019723	protein_coding	Pmfbp1	intron	ENSMUSG00000031727	NonProperStrand	3	1	-19.5762
chr11	17221334	17221367	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr18	65888689	65888727	protein_coding	5330437I02Rik	intron	ENSMUSG00000046610	NonProperStrand	6	1	-18.2066
chr2	157834893	157834989	protein_coding	Tti1	exon	ENSMUSG00000027650	NonProperStrand	64	chr4	110918171	110918190	protein_coding	Agbl4	intron	ENSMUSG00000061298	NonProperStrand	47	1	-12.3857
chr17	39843363	39843488	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	99299083	99299116	protein_coding	Mras	intron	ENSMUSG00000032470	NonProperStrand	12	1	-5.6158
chr13	40917667	40917699	LTR	MuLV-int	ERV1	chr13MuLV-int40917259	NonProperStrand	10	chr17	39846412	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-5.6971
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr17	39847658	39848085	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-3.1878
chr16	17640282	17640912	protein_coding	Smpd4	intron	ENSMUSG00000005899	ProperStrand	18	chr6	134716581	134716654	protein_coding	Dusp16	intron	ENSMUSG00000030203	ProperStrand	47	1	-14.9592
chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	chr2	93699403	93699429	protein_coding	Accsl	intron	ENSMUSG00000075023	ProperStrand	26	1	-13.1633
chr6	30494832	30494922	protein_coding-noncoding	Cpa2	utr5	ENSMUSG00000071553	ProperStrand	1	chr6	30494943	30495043	protein_coding	Cpa2	intron	ENSMUSG00000071553	ProperStrand	3	1	-inf
chr17	39847174	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	57182134	57182166	protein_coding	Gpd2	intron	ENSMUSG00000026827	ProperStrand	7	1	-3.6430
chr15	31592944	31593006	LINE	L1MB2	L1	chr15L1MB231592920	ProperStrand	3	chr1	127306634	127306681	protein_coding	Actr3	intron	ENSMUSG00000026341	NonProperStrand	28	1	-19.7481
chr12	75668092	75668182	LTR	IAP-d-int	ERVK	chr12IAP-d-int75667912	ProperStrand	1	chr17	39847611	39847667	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	123461865	123461995	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr5	93199570	93206394	protein_coding	Shroom3	intron	ENSMUSG00000029381	NonProperStrand	36	2	-3.7021
chr2	90872642	90872742	LTR	RMER15	ERVL	chr2RMER1590872591	ProperStrand	1	chr2	90872271	90872361	SINE	ID_B1	B4	chr2ID_B190872293	NonProperStrand	1	1	-inf
chr7	27204076	27204116	SINE	ID_B1	B4	chr7ID_B127204017	NonProperStrand	1	chr6	24609929	24610036	protein_coding	Wasl	intron	ENSMUSG00000029684	ProperStrand	5	1	-inf
chr19	36892614	36892709	LTR	MTE2b	MaLR	chr19MTE2b36892600	ProperStrand	2	chr9	123461932	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr10	127698104	127698204	SINE	B2_Mm1t	B2	chr10B2_Mm1t127698111	ProperStrand	2	chr10	127698014	127698104	SINE	ID_B1	B4	chr10ID_B1127697905	ProperStrand	2	2	-inf
chr5	76966825	76966902	protein_coding-noncoding	Exoc1	utr5	ENSMUSG00000036435	ProperStrand	23	chr5	76966757	76966824	protein_coding	Exoc1	exon	ENSMUSG00000036435	ProperStrand	20	1	-16.2021
chr11	60157665	60157765	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	chr11	60157580	60157670	pseudogene	Gm12266	.	ENSMUSG00000082148	ProperStrand	2	1	-17.2123
chr15	72994503	72994603	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	9	chr14	119574750	119574840	protein_coding	Hs6st3	intron	ENSMUSG00000053465	ProperStrand	34	1	-17.0674
chr9	64896445	64896462	protein_coding	Dpp8	intron	ENSMUSG00000032393	NonProperStrand	8	chr13	51782177	51782275	protein_coding	Gm15440	intron	ENSMUSG00000051107	ProperStrand	23	1	-18.1293
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	24	chr4	85230674	85230704	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	1	-12.5366
chr16	91526058	91526158	DNA	Arthur1	Tip100	chr16Arthur191526066	NonProperStrand	1	chr16	91525691	91525781	LINE	Lx7	L1	chr16Lx791525615	ProperStrand	1	1	-inf
chr17	39843847	39843899	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr14	76517759	76517821	protein_coding	Nufip1	intron	ENSMUSG00000022009	ProperStrand	21	1	-4.9585
chr17	39847174	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	127710200	127710217	protein_coding	Stat2	intron	ENSMUSG00000040033	ProperStrand	4	1	-4.8204
chrX	101404958	101405037	SINE	B4A	B4	chrXB4A101404902	NonProperStrand	1	chr7	133112750	133112819	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr2	25441570	25441974	protein_coding	B230208H17Rik	intron	ENSMUSG00000015087	NonProperStrand	22	chr6	148354795	148354811	protein_coding	Tmtc1	intron	ENSMUSG00000030306	NonProperStrand	51	2	-inf
chr15	7201393	7201460	protein_coding	Egflam	intron	ENSMUSG00000042961	NonProperStrand	61	chr15	37368458	37368475	protein_coding	Ncald	intron	ENSMUSG00000051359	ProperStrand	16	1	-14.6737
chr7	4435886	4440894	protein_coding-noncoding	Ppp1r12c	utr3	ENSMUSG00000019254	ProperStrand	4	chr7	4436022	4440018	protein_coding	Ppp1r12c	intron	ENSMUSG00000019254	ProperStrand	7	4	-inf
chr19	8823249	8823277	protein_coding	Stx5a	intron	ENSMUSG00000010110	ProperStrand	40	chr13	36506381	36506399	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	1	-9.7599
chr11	120066019	120066038	Simple_repeat	(CTG)n	Simple_repeat	chr11(CTG)n120065791	NonProperStrand	2	chr13	63289552	63289642	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	1	-16.3042
chr15	62067339	62067444	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr4	53860740	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-3.7314
chr2	121936095	121936185	protein_coding	Spg11	intron	ENSMUSG00000033396	NonProperStrand	21	chr8	119846370	119846470	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-12.3792
chr19	32281826	32281916	protein_coding	Sgms1	intron	ENSMUSG00000040451	NonProperStrand	13	chr19	32213514	32213614	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-13.1844
chr7	96245736	96245824	SINE	B1F1	Alu	chr7B1F196245703	NonProperStrand	1	chr7	96246199	96246240	SINE	PB1D7	Alu	chr7PB1D796246128	ProperStrand	2	1	-inf
chr12	59040418	59040508	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr2	130997100	130997200	protein_coding	Spef1	utr3	ENSMUSG00000027329	NonProperStrand	10	1	-13.6976
chr5	146260994	146261023	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	36518815	36518834	protein_coding	Dpy19l3	intron	ENSMUSG00000043671	NonProperStrand	2	1	-12.4657
chr5	148550314	148550404	SINE	B3	B2	chr5B3148550291	ProperStrand	4	chr5	148550185	148550285	Simple_repeat	(CATA)n	Simple_repeat	chr5(CATA)n148550168	NonProperStrand	2	2	-inf
chr14	52070831	52070921	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	chr8	123206192	123206292	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-4.8772
chr9	84036610	84036688	LINE	L1VL4	L1	chr9L1VL484036126	ProperStrand	3	chr16	44139943	44139975	protein_coding	Naa50	utr5	ENSMUSG00000022698	ProperStrand	41	1	-19.6540
chr11	109011675	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	28399350	28399416	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	1	-5.0258
chr11	58338817	58338906	LINE	L1_Mus2	L1	chr11L1_Mus258335736	NonProperStrand	1	chr9	123528614	123528638	protein_coding	Slc6a20b	intron	ENSMUSG00000025243	ProperStrand	3	1	-inf
chr9	108093314	108093404	SINE	B1_Mus2	Alu	chr9B1_Mus2108093321	NonProperStrand	1	chr9	108093153	108093253	SINE	RSINE1	B4	chr9RSINE1108093106	NonProperStrand	1	1	-inf
chr11	88856935	88857040	antisense	Gm11496	.	ENSMUSG00000085152	ProperStrand	11	chr9	123461833	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr11	72628032	72628106	protein_coding	Zzef1	intron	ENSMUSG00000055670	ProperStrand	78	chr11	72609426	72609510	protein_coding	Cyb5d2	intron	ENSMUSG00000057778	NonProperStrand	1	1	-inf
chr9	79251501	79251591	LINE	L1Md_A	L1	chr9L1Md_A79250694	ProperStrand	1	chr9	79690683	79690783	protein_coding	Filip1	intron	ENSMUSG00000034898	ProperStrand	14	1	-inf
chr18	80093553	80093596	LINE	L1Md_F2	L1	chr18L1Md_F280093047	NonProperStrand	1	chr5	64192665	64192692	protein_coding	3110047P20Rik	intron	ENSMUSG00000090061	ProperStrand	21	1	-inf
chr2	148693598	148693688	DNA	Tigger1	MER2_type	chr2Tigger1148693429	ProperStrand	1	chr2	148694033	148694133	DNA	Tigger1	MER2_type	chr2Tigger1148694010	ProperStrand	1	1	-inf
chr1	138967589	138967644	SINE	B4A	B4	chr1B4A138967543	NonProperStrand	1	chr19	44306528	44306587	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	1	-inf
chr11	109011785	109011831	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	105953227	105953245	processed_transcript	Gm12724	.	ENSMUSG00000086249	NonProperStrand	1	1	-inf
chr17	39847835	39847907	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	60213950	60214004	SINE	B2_Mm2	B2	chr11B2_Mm260213855	ProperStrand	1	1	-inf
chr11	69007571	69007604	protein_coding	Alox8	intron	ENSMUSG00000020891	ProperStrand	38	chr17	32260542	32260565	protein_coding	Notch3	intron	ENSMUSG00000038146	ProperStrand	60	1	-12.9463
chr15	58204732	58204832	SINE	B2_Mm1a	B2	chr15B2_Mm1a58204621	NonProperStrand	1	chr15	58205185	58205275	SINE	MIRb	MIR	chr15MIRb58205126	ProperStrand	1	1	-inf
chr17	39847539	39847606	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	86934805	86934831	SINE	ID_B1	B4	chr14ID_B186934787	NonProperStrand	1	1	-inf
chr17	39847687	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	76361106	76361176	protein_coding	Fam83b	intron	ENSMUSG00000032358	NonProperStrand	5	1	-3.2379
chr6	32696618	32696718	LINE	L1Md_A	L1	chr6L1Md_A32695879	NonProperStrand	1	chr3	10392223	10392313	LTR	MLT1A0	MaLR	chr3MLT1A010392212	NonProperStrand	1	1	-inf
chr5	146261172	146261197	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	44618605	44618707	protein_coding	Gulp1	intron	ENSMUSG00000056870	ProperStrand	10	2	-13.9221
chr17	39848640	39848730	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	150049064	150049164	lincRNA	Gm16079	intron	ENSMUSG00000085869	NonProperStrand	16	1	-4.0522
chr5	113076051	113076067	LTR	ORR1A0	MaLR	chr5ORR1A0113075982	ProperStrand	2	chr9	118674950	118675070	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr7	113628928	113629018	LINE	Lx3A	L1	chr7Lx3A113628480	NonProperStrand	1	chr7	113629128	113629228	Simple_repeat	(TTTTC)n	Simple_repeat	chr7(TTTTC)n113629087	ProperStrand	1	1	-inf
chr8	22492480	22492532	LINE	L1VL1	L1	chr8L1VL122490074	NonProperStrand	11	chr19	46035793	46035949	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	1	-13.6630
chr5	72618173	72618189	lincRNA	Atp10d	intron	ENSMUSG00000046808	NonProperStrand	11	chr2	91712386	91712404	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-14.8649
chr17	39847476	39847950	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	59471879	59491485	protein_coding	Mina	utr3	ENSMUSG00000022724	ProperStrand	14	3	-4.4446
chr4	90689650	90689750	DNA	URR1A	MER1_type	chr4URR1A90689609	NonProperStrand	1	chr4	90690072	90690162	LINE	Lx5	L1	chr4Lx590690043	ProperStrand	1	1	-inf
chr17	31847215	31847231	SINE	B1_Mur3	Alu	chr17B1_Mur331847134	ProperStrand	5	chr9	118606849	118606954	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-14.6510
chr13	76724930	76725021	protein_coding	Mctp1	intron	ENSMUSG00000021596	NonProperStrand	18	chr13	78197122	78197222	protein_coding	Fam172a	intron	ENSMUSG00000064138	NonProperStrand	5	1	-19.9608
chr8	120505814	120505904	LINE	L1Md_T	L1	chr8L1Md_T120501985	ProperStrand	17	chr16	56007112	56007212	protein_coding	Rpl24	exon	ENSMUSG00000022601	ProperStrand	72	1	-14.2196
chr17	39843759	39843827	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr3	121455088	121457114	LTR	RLTR13D6	ERVK	chr3RLTR13D6121456967	ProperStrand	2	1	-10.2298
chr12	4885768	4891324	SINE	B1_Mus2	Alu	chr12B1_Mus24885691	ProperStrand	1	chr12	4891319	4891409	protein_coding	Ubxn2a	intron	ENSMUSG00000020634	ProperStrand	19	1	-inf
chr17	39843752	39843779	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	20367283	20367300	protein_coding	Vmn2r105	intron	ENSMUSG00000091670	ProperStrand	2	1	-10.2298
chr17	39843709	39843757	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	60073209	60073299	protein_coding	Ica1l	intron	ENSMUSG00000026018	ProperStrand	16	1	-5.4983
chr19	5764973	5765046	protein_coding	Scyl1	intron	ENSMUSG00000024941	ProperStrand	15	chr16	11143905	11143988	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	1	-11.8862
chr15	77082114	77082196	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	chr8	89030729	89030768	protein_coding	Abcc12	exon	ENSMUSG00000036872	ProperStrand	128	1	-8.7333
chr19	5798915	5798983	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr15	102345679	102345725	protein_coding	Map3k12	intron	ENSMUSG00000023050	ProperStrand	33	1	-5.6003
chr10	80666086	80666188	antisense	2310050B05Rik	.	ENSMUSG00000085779	NonProperStrand	11	chr13	58393771	58394079	protein_coding	Kif27	intron	ENSMUSG00000060176	ProperStrand	75	1	-15.0454
chr1	191585881	191585931	protein_coding	Ptpn14	intron	ENSMUSG00000026604	ProperStrand	53	chr9	59670607	59670694	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-6.5339
chr4	34861433	34861528	LINE	Lx6	L1	chr4Lx634860997	NonProperStrand	1	chr13	93890646	93890665	protein_coding	Cmya5	intron	ENSMUSG00000047419	ProperStrand	4	1	-inf
chr1	53264231	53264289	protein_coding	Pms1	intron	ENSMUSG00000026098	ProperStrand	45	chr5	105889009	105889075	protein_coding	Lrrc8b	intron	ENSMUSG00000070639	ProperStrand	20	1	-14.8338
chr9	66439199	66439809	protein_coding	Usp3	intron	ENSMUSG00000032376	NonProperStrand	21	chr11	33161986	33162024	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-9.5593
chr13	97190561	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr15	73597780	73597854	protein_coding	Gm628	intron	ENSMUSG00000072487	ProperStrand	110	1	-3.9649
chr13	97190574	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr7	131349328	131349422	sense_intronic	Gm15338	.	ENSMUSG00000085899	NonProperStrand	35	1	-6.1809
chr8	67914787	67914877	LINE	Lx2A1	L1	chr8Lx2A167913819	NonProperStrand	1	chr8	67915182	67915282	LTR	MTC	MaLR	chr8MTC67915013	ProperStrand	1	1	-inf
chr17	26243510	26243571	SINE	B1_Mus1	Alu	chr17B1_Mus126243523	NonProperStrand	1	chr9	123462115	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	70963687	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-6.1428
chr2	5379252	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr1	72210965	72211040	protein_coding	Mreg	intron	ENSMUSG00000039395	ProperStrand	8	1	-8.6062
chr11	11800752	11800769	LINE	Lx8	L1	chr11Lx811799979	ProperStrand	1	chr13	97190561	97190608	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr12	78350923	78351053	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	3	-5.6008
chr17	12757356	12757456	LTR	RLTR13B1	ERVK	chr17RLTR13B112757345	ProperStrand	7	chr17	12756995	12757085	LTR	RLTRETN_Mm	ERVK	chr17RLTRETN_Mm12756906	ProperStrand	7	7	-inf
chr5	33510322	33510412	LINE	L1MC3	L1	chr5L1MC333510302	NonProperStrand	3	chr5	33510223	33510323	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n33510225	NonProperStrand	2	1	-20.2824
chr8	84686379	84686469	LINE	L1_Mus4	L1	chr8L1_Mus484686366	NonProperStrand	17	chr8	84686274	84686374	Simple_repeat	(TC)n	Simple_repeat	chr8(TC)n84686282	NonProperStrand	6	6	-inf
chr13	28570915	28571008	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	chr15	81748668	81748697	protein_coding	Polr3h	intron	ENSMUSG00000022476	NonProperStrand	12	1	-13.8347
chr14	7867697	7877512	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	chr14	7869794	7877411	protein_coding	Gm3685	exon	ENSMUSG00000091202	NonProperStrand	13	12	-inf
chr8	77511289	77511379	LTR	ORR1C1	MaLR	chr8ORR1C177511311	ProperStrand	1	chr8	77511183	77511283	SINE	B2_Mm2	B2	chr8B2_Mm277511121	ProperStrand	1	1	-inf
chr17	39847777	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	55593073	55594309	protein_coding	Myh7	intron	ENSMUSG00000053093	ProperStrand	1	1	-inf
chr15	83408658	83422016	protein_coding	Ttll12	intron	ENSMUSG00000016757	ProperStrand	38	chr15	83445928	83461295	protein_coding	Scube1	intron	ENSMUSG00000016763	ProperStrand	120	3	-inf
chr1	122357170	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr13	44869571	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	4	-6.8639
chr7	116146132	116146170	LTR	ORR1B1	MaLR	chr7ORR1B1116146065	ProperStrand	1	chr13	49523281	49523340	protein_coding	Ippk	intron	ENSMUSG00000021385	NonProperStrand	66	1	-inf
chr9	71478741	71479048	protein_coding-noncoding	Cgnl1	utr3	ENSMUSG00000032232	ProperStrand	26	chr9	71478645	71483428	protein_coding	Cgnl1	intron	ENSMUSG00000032232	ProperStrand	38	8	-inf
chr7	15819522	15819612	LINE	L1_Mur1	L1	chr7L1_Mur115818677	ProperStrand	1	chr7	15819865	15819965	LINE	Lx7	L1	chr7Lx715819722	ProperStrand	1	1	-inf
chr19	16918815	16918838	LTR	RLTR13D6	ERVK	chr19RLTR13D616918280	ProperStrand	1	chr8	13556652	13556707	protein_coding	1700029H14Rik	intron	ENSMUSG00000031452	NonProperStrand	5	1	-inf
chr12	14835860	14835949	LINE	L1MC3	L1	chr12L1MC314835583	NonProperStrand	1	chr1	118860145	118860180	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n118860095	NonProperStrand	1	1	-inf
chr18	41903192	41903292	LINE	Lx	L1	chr18Lx41902695	NonProperStrand	1	chr18	41903282	41903372	LTR	RMER17B	ERVK	chr18RMER17B41903270	NonProperStrand	5	1	-inf
chr11	121540867	121540964	LTR	MTD	MaLR	chr11MTD121540846	NonProperStrand	6	chr10	58342006	58342049	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-14.8866
chr5	114852003	114852031	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	1	-9.4782
chr17	50420126	50420172	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr9	65704543	65706109	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	2	-14.6811
chr17	39847477	39847537	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	32833690	32833760	protein_coding	Slc2a8	intron	ENSMUSG00000026791	ProperStrand	4	1	-3.7035
chr15	59074044	59074112	SINE	B1_Mm	Alu	chr15B1_Mm59073960	NonProperStrand	1	chr2	179587672	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	1	-inf
chr13	60645620	60645652	LINE	L2	L2	chr13L260645535	NonProperStrand	1	chr17	35506210	35506252	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	1	-inf
chr7	27815716	27815756	protein_coding	Cyp2a12	intron	ENSMUSG00000060407	ProperStrand	4	chr4	131924273	131924320	protein_coding	Phactr4	intron	ENSMUSG00000066043	ProperStrand	64	1	-17.6295
chr17	39846818	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	4537141	4537212	SINE	B1F1	Alu	chr11B1F14537103	NonProperStrand	1	1	-inf
chr13	104695449	104695489	protein_coding	Erbb2ip	intron	ENSMUSG00000021709	ProperStrand	54	chr4	132338186	132338216	protein_coding	BC013712	utr3	ENSMUSG00000037731	ProperStrand	63	1	-12.1370
chr5	120808945	120809035	SINE	ID_B1	B4	chr5ID_B1120808929	NonProperStrand	2	chr5	120808838	120808938	SINE	MIR	MIR	chr5MIR120808833	ProperStrand	2	2	-inf
chr6	147112420	147112437	LINE	L1_Mm	L1	chr6L1_Mm147111590	ProperStrand	1	chr9	21781151	21781243	protein_coding	Rgl3	utr3	ENSMUSG00000040146	ProperStrand	30	1	-inf
chr7	19371245	19371370	LTR	ORR1A2	MaLR	chr7ORR1A219371158	ProperStrand	1	chr6	125462362	125462397	SINE	B4	B4	chr6B4125462228	ProperStrand	1	1	-inf
chr9	54596156	54596891	SINE	B1F	Alu	chr9B1F54596802	ProperStrand	2	chr9	54596907	54598431	SINE	B4A	B4	chr9B4A54596924	ProperStrand	2	2	-inf
chr14	51193246	51193348	LTR	RLTR13D6	ERVK	chr14RLTR13D651192556	NonProperStrand	1	chr9	68925599	68925689	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-inf
chr9	123461935	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	56714966	56715092	protein_coding	Safb2	exon	ENSMUSG00000042625	ProperStrand	14	1	-3.7266
chr7	13028525	13028770	SINE	B2_Mm1t	B2	chr7B2_Mm1t13028561	NonProperStrand	19	chr7	13028757	13029215	SINE	B4A	B4	chr7B4A13028817	ProperStrand	31	18	-23.2922
chr17	24164805	24164905	LTR	MTC-int	MaLR	chr17MTC-int24164662	ProperStrand	12	chr17	24164959	24165049	LTR	MTC	MaLR	chr17MTC24164965	ProperStrand	3	2	-inf
chr7	96595545	96595566	LINE	L1_Mur2	L1	chr7L1_Mur296595169	ProperStrand	1	chr7	96596473	96596566	LINE	Lx5	L1	chr7Lx596595802	ProperStrand	1	1	-inf
chr5	139382415	139382509	LTR	ORR1C1	MaLR	chr5ORR1C1139382163	NonProperStrand	2	chr1	58000553	58000577	protein_coding	Spats2l	intron	ENSMUSG00000038305	ProperStrand	17	1	-20.8675
chr10	105838950	105839040	LINE	L1Md_T	L1	chr10L1Md_T105833663	ProperStrand	1	chr10	105839169	105839269	LINE	L1Md_T	L1	chr10L1Md_T105839085	ProperStrand	1	1	-inf
chr9	40803994	40804058	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr1	89489055	89489127	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	1	-3.9262
chr19	42431183	42431320	protein_coding	Crtac1	intron	ENSMUSG00000042401	ProperStrand	106	chr11	93121852	93121869	protein_coding	Car10	intron	ENSMUSG00000056158	NonProperStrand	10	1	-14.5482
chr15	41335714	41335821	protein_coding	Oxr1	intron	ENSMUSG00000022307	NonProperStrand	5	chr2	5379308	5379340	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.6307
chr5	134964881	134964948	SINE	B1_Mus1	Alu	chr5B1_Mus1134964823	NonProperStrand	1	chr5	134965429	134965506	protein_coding	Clip2	utr3	ENSMUSG00000063146	ProperStrand	3	1	-inf
chr1	192745595	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr17	26036680	26067616	protein_coding	Pigq	intron	ENSMUSG00000025728	ProperStrand	31	1	-13.8087
chr4	23810656	23810756	LINE	L1Md_A	L1	chr4L1Md_A23810666	NonProperStrand	1	chr4	23810390	23810480	LINE	L1Md_F3	L1	chr4L1Md_F323810293	ProperStrand	1	1	-inf
chr17	39845156	39845186	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	37654281	37654401	LINE	Lx8	L1	chr9Lx837654165	NonProperStrand	6	1	-6.6890
chr13	44869573	44869638	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr13	45864020	45864083	protein_coding	Atxn1	intron	ENSMUSG00000046876	ProperStrand	103	1	-3.4792
chr8	34313542	34313632	LINE	HAL1	L1	chr8HAL134313477	ProperStrand	1	chr8	34313928	34314028	LTR	MLT1A	MaLR	chr8MLT1A34313736	ProperStrand	1	1	-inf
chr17	29581422	29581497	SINE	B1_Mus1	Alu	chr17B1_Mus129581370	NonProperStrand	1	chr5	92181355	92181421	pseudogene	Gm15710	.	ENSMUSG00000084111	NonProperStrand	50	1	-inf
chr17	39846587	39846620	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	8624826	8624917	SINE	B3	B2	chr11B38624812	ProperStrand	1	1	-inf
chr18	10052131	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	5	chr2	71900292	71900389	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-15.5199
chr1	168348196	168348265	LINE	L1M2	L1	chr1L1M2168348197	ProperStrand	6	chr1	168353697	168353740	LINE	L1Md_T	L1	chr1L1Md_T168348652	ProperStrand	5	1	-inf
chr17	39846747	39846852	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	59028602	59028618	protein_coding	Arf1	intron	ENSMUSG00000048076	NonProperStrand	1	1	-inf
chr2	173004331	173004372	Simple_repeat	(TATAA)n	Simple_repeat	chr2(TATAA)n173004297	ProperStrand	1	chr9	55223942	55223993	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	1	-inf
chr17	39846462	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	135563792	135563842	LTR	ORR1D1	MaLR	chr3ORR1D1135563681	NonProperStrand	1	1	-inf
chr5	102027490	102027589	LINE	Lx5	L1	chr5Lx5102027069	NonProperStrand	4	chr5	102027604	102027694	LINE	Lx9	L1	chr5Lx9102027607	NonProperStrand	6	4	-inf
chr9	123462081	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	158013197	158013261	protein_coding	D630003M21Rik	intron	ENSMUSG00000037813	ProperStrand	13	1	-3.8693
chr2	178048974	178049010	protein_coding	Phactr3	intron	ENSMUSG00000027525	ProperStrand	26	chr12	117672166	117672275	protein_coding	Ncapg2	intron	ENSMUSG00000042029	ProperStrand	22	1	-15.7782
chr13	102646358	102646448	LINE	Lx8	L1	chr13Lx8102644883	ProperStrand	1	chr13	102647065	102647165	Other	RMER1A	Other	chr13RMER1A102646766	ProperStrand	1	1	-inf
chr15	58055822	58055921	lincRNA	Gm15943	intron	ENSMUSG00000086801	NonProperStrand	53	chr19	44304595	44304630	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	1	-10.0795
chr9	100631224	100631307	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	chr13	44869952	44870020	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.8788
chr4	135216767	135216833	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n135216554	NonProperStrand	3	chr9	123461903	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr19	29029369	29029452	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	59	1	-5.1549
chr9	106431293	106431386	Other	RMER1A	Other	chr9RMER1A106431168	ProperStrand	15	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.2385
chr13	100774037	100774111	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	chr5	151370033	151370114	protein_coding	Brca2	intron	ENSMUSG00000041147	ProperStrand	1	1	-inf
chr12	67662656	67662707	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	chr18	7383857	7383913	protein_coding	Mpp7	intron	ENSMUSG00000057440	ProperStrand	99	1	-10.5673
chr5	139325299	139325389	DNA	URR1B	MER1_type	chr5URR1B139325204	ProperStrand	1	chr5	139293144	139302329	SINE	B3	B2	chr5B3139293129	ProperStrand	1	1	-inf
chr17	4082254	4082344	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr17	38683064	38683164	LINE	L1_Mus3	L1	chr17L1_Mus338682397	NonProperStrand	1	1	-inf
chr3	37481454	37481649	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	chr11	120347008	120347034	protein_coding	Mrpl12	exon	ENSMUSG00000039640	NonProperStrand	89	1	-13.2649
chr17	39846638	39846720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	110432551	110432618	protein_coding-noncoding	Zfp932	utr5	ENSMUSG00000066613	NonProperStrand	3	1	-4.3017
chr15	89162255	89162298	SINE	B2_Mm1t	B2	chr15B2_Mm1t89162102	ProperStrand	1	chr15	89164487	89165298	protein_coding-noncoding	Miox	utr5	ENSMUSG00000022613	NonProperStrand	14	1	-inf
chr6	90526920	90526997	protein_coding	Aldh1l1	intron	ENSMUSG00000030088	ProperStrand	124	chr15	82857038	82857077	protein_coding	Nfam1	intron	ENSMUSG00000058099	ProperStrand	119	1	-9.1914
chr17	39845994	39846094	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr12	111710957	111711047	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	NonProperStrand	26	1	-3.4481
chr3	138477715	138477762	protein_coding	Tspan5	intron	ENSMUSG00000028152	NonProperStrand	34	chr2	41296113	41296131	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-13.2743
chr14	31745310	31746916	protein_coding	Itih1	intron	ENSMUSG00000006529	ProperStrand	11	chr8	72475177	72475194	protein_coding	Gatad2a	intron	ENSMUSG00000036180	NonProperStrand	41	1	-16.2906
chr6	42180372	42180472	LINE	Lx8	L1	chr6Lx842180360	ProperStrand	1	chr6	42180147	42180237	SINE	MIRc	MIR	chr6MIRc42180146	ProperStrand	1	1	-inf
chr9	123461957	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	181068358	181068379	protein_coding	Rtel1	intron	ENSMUSG00000038685	NonProperStrand	15	1	-3.5950
chr17	39846921	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	145286111	145286140	Low_complexity	GA-rich	Low_complexity	chr5GA-rich145285994	ProperStrand	1	1	-inf
chr2	5379294	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	108654916	108655143	protein_coding	Ccdc18	intron	ENSMUSG00000056531	NonProperStrand	57	1	-4.6466
chr2	130597480	130597560	protein_coding	4930402H24Rik	intron	ENSMUSG00000027309	ProperStrand	117	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.8497
chr7	92786348	92786385	LINE	L1_Mm	L1	chr7L1_Mm92786323	ProperStrand	1	chr2	156852853	156852944	protein_coding	9830001H06Rik	intron	ENSMUSG00000055485	NonProperStrand	51	1	-inf
chr5	100427146	100427288	LTR	RMER15	ERVL	chr5RMER15100427148	ProperStrand	13	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-13.0621
chr17	39846583	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	62740003	62740020	SINE	B3	B2	chr11B362739910	NonProperStrand	1	1	-inf
chr2	18902747	18902827	protein_coding	Pip4k2a	intron	ENSMUSG00000026737	ProperStrand	29	chr2	5379132	5379184	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.9680
chr18	45737866	45737956	protein_coding	Kcnn2	intron	ENSMUSG00000054477	NonProperStrand	20	chr18	45668877	45668977	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	1	-15.1867
chr6	4830821	4830854	DNA	RCHARR1	MER1_type	chr6RCHARR14830276	NonProperStrand	1	chr6	122732391	122732434	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-inf
chr2	121492360	121492406	protein_coding	Frmd5	intron	ENSMUSG00000027238	ProperStrand	82	chr8	70508452	70509316	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-6.7891
chr1	179788332	179789713	LINE	L1Md_T	L1	chr1L1Md_T179789280	NonProperStrand	1	chr1	179777736	179777798	LTR	ORR1A2-int	MaLR	chr1ORR1A2-int179777640	NonProperStrand	2	1	-inf
chr17	39848134	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	160795419	160795474	protein_coding	Chd6	intron	ENSMUSG00000057133	ProperStrand	8	1	-5.1688
chr7	12930796	12930857	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr6	71882607	71882693	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-9.9231
chr7	19006064	19006080	LINE	L1_Mus2	L1	chr7L1_Mus219002686	ProperStrand	3	chr17	39848029	39848079	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr4	101541928	101541988	LTR	RLTR4_MM-int	ERV1	chr4RLTR4_MM-int101536458	NonProperStrand	13	chr4	101585888	101585966	SINE	B2_Mm1a	B2	chr4B2_Mm1a101585885	ProperStrand	1	1	-inf
chr3	133487170	133487279	LINE	L1_Mus2	L1	chr3L1_Mus2133484331	ProperStrand	14	chr2	29986288	29986421	SINE	B2_Mm2	B2	chr2B2_Mm229986358	ProperStrand	2	2	-inf
chr6	124741224	124741279	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr3	95137460	95137492	protein_coding	Setdb1	intron	ENSMUSG00000015697	ProperStrand	3	1	-inf
chr7	80310937	80311037	DNA	MER5A1	MER1_type	chr7MER5A180310920	NonProperStrand	4	chr7	80310821	80310911	DNA	MER5B	MER1_type	chr7MER5B80310734	NonProperStrand	4	4	-inf
chr4	95726678	95726721	protein_coding	Cyp2j13	intron	ENSMUSG00000028571	NonProperStrand	17	chr11	85424310	85424369	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-12.0427
chr9	123462101	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	133599571	133599651	protein_coding	5430435G22Rik	intron	ENSMUSG00000052688	NonProperStrand	19	1	-3.1531
chr9	120938035	120938091	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	chr6	94102496	94102541	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-3.5194
chr9	107464463	107464535	protein_coding	Rassf1	utr3	ENSMUSG00000010067	ProperStrand	1	chr9	107442017	107442101	protein_coding	Cyb561d2	utr3	ENSMUSG00000037190	NonProperStrand	3	1	-inf
chr13	97190561	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	163056910	163068177	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	2	-3.3728
chr7	109521279	109521326	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr9	95776807	95782375	protein_coding	Atr	intron	ENSMUSG00000032409	NonProperStrand	12	1	-13.1253
chr13	119468420	119468443	protein_coding	Fgf10	intron	ENSMUSG00000021732	ProperStrand	18	chr15	25862624	25862678	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	163	1	-12.4612
chr12	81174660	81174750	SINE	ID_B1	B4	chr12ID_B181174597	NonProperStrand	1	chr12	81174812	81174912	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n81174742	ProperStrand	1	1	-inf
chr6	106784426	106784456	SINE	RSINE1	B4	chr6RSINE1106784432	ProperStrand	1	chr2	35695452	35695492	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	1	-inf
chr9	45557167	45557248	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	chr11	107770988	107771007	protein_coding	Cacng5	intron	ENSMUSG00000040373	ProperStrand	9	1	-13.7890
chr6	148930597	148933036	SINE	B4A	B4	chr6B4A148930562	ProperStrand	6	chr16	61377436	61377477	pseudogene	Gm9027	.	ENSMUSG00000092029	ProperStrand	1	1	-inf
chr12	83737336	83737436	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	72	chr2	35187191	35187281	protein_coding	Stom	intron	ENSMUSG00000026880	ProperStrand	16	1	-14.3459
chr12	4005296	4005347	protein_coding	Efr3b	intron	ENSMUSG00000020658	ProperStrand	37	chr8	84257037	84257132	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-11.0546
chr6	3201499	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	35593472	35593549	protein_coding	Chst8	intron	ENSMUSG00000060402	NonProperStrand	15	1	-5.5348
chr5	146261162	146261232	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	35141581	35141845	protein_coding	Vars	intron	ENSMUSG00000007029	ProperStrand	65	1	-4.9078
chr2	22037900	22037990	LINE	L1_Mus3	L1	chr2L1_Mus322035511	NonProperStrand	5	chr2	22095277	22095377	LTR	MLT1B	MaLR	chr2MLT1B22095096	ProperStrand	1	1	-inf
chr9	19657565	19657655	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chrX	100460147	100460247	protein_coding	4930519F16Rik	intron	ENSMUSG00000031325	ProperStrand	18	1	-16.1859
chr17	39846411	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	58920320	58920439	protein_coding	Hspa12a	intron	ENSMUSG00000025092	ProperStrand	4	1	-3.6552
chr11	109011656	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	102403420	102403485	protein_coding	Gpatch8	intron	ENSMUSG00000034621	ProperStrand	58	1	-6.1665
chr2	33228626	33228651	SINE	B2_Mm2	B2	chr2B2_Mm233228610	NonProperStrand	1	chr5	65666262	65696812	protein_coding	Rfc1	intron	ENSMUSG00000029191	ProperStrand	34	1	-inf
chr5	146261259	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr8	79602425	79602519	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	1	-10.2269
chr8	33801289	33801389	SINE	B4A	B4	chr8B4A33801297	NonProperStrand	1	chr8	33801446	33801536	SINE	B4A	B4	chr8B4A33801453	NonProperStrand	6	1	-inf
chr10	80277682	80277723	SINE	B2_Mm2	B2	chr10B2_Mm280277658	NonProperStrand	1	chr9	123461931	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	25928312	25928388	protein_coding	5730522E02Rik	intron	ENSMUSG00000032985	ProperStrand	42	chr13	44869573	44869611	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.1817
chr6	3201509	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	93845750	93845766	protein_coding	Cmya5	intron	ENSMUSG00000047419	ProperStrand	4	1	-8.3508
chr12	116062160	116062177	LINE	L1_Mus1	L1	chr12L1_Mus1116058677	NonProperStrand	5	chr4	123125160	123125211	protein_coding	Macf1	intron	ENSMUSG00000028649	ProperStrand	35	1	-18.2660
chrX	77762204	77762227	LINE	Lx6	L1	chrXLx677761684	NonProperStrand	2	chr4	149018970	149019075	protein_coding	Clstn1	exon	ENSMUSG00000039953	NonProperStrand	81	1	-18.6285
chr17	39847273	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	83931797	83931813	protein_coding	Mnd1	intron	ENSMUSG00000033752	NonProperStrand	5	1	-4.3348
chr11	57521717	57521826	protein_coding	Galnt10	intron	ENSMUSG00000020520	ProperStrand	49	chr11	101604998	101605038	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-12.8810
chr17	39842998	39843040	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chrX	5626600	5626704	protein_coding	Nudt11	intron	ENSMUSG00000073295	NonProperStrand	2	1	-12.8014
chr17	70963682	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr13	97190541	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	10	-11.2267
chr2	71089842	71089859	protein_coding	Dync1i2	intron	ENSMUSG00000027012	NonProperStrand	12	chr9	18315819	18315846	protein_coding	Muc16	intron	ENSMUSG00000032134	NonProperStrand	9	1	-20.0397
chr10	23442823	23442913	LINE	L1_Mus3	L1	chr10L1_Mus323442789	ProperStrand	1	chr10	23442533	23442633	LINE	Lx7	L1	chr10Lx723442373	ProperStrand	1	1	-inf
chr2	164809252	164809348	protein_coding	Slc12a5	intron	ENSMUSG00000017740	ProperStrand	54	chr14	64778523	64778578	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	1	-10.3170
chr4	44011850	44011940	LTR	ORR1C1-int	MaLR	chr4ORR1C1-int44011248	NonProperStrand	1	chr4	44012070	44012170	LTR	ORR1C1	MaLR	chr4ORR1C144012036	NonProperStrand	1	1	-inf
chr17	16780575	16780675	LINE	Lx9	L1	chr17Lx916780547	ProperStrand	1	chr17	16780102	16780192	LTR	RMER6A	ERVK	chr17RMER6A16779550	NonProperStrand	1	1	-inf
chr7	28814286	28815298	LTR	RLTR42-int	ERVK	chr7RLTR42-int28815017	ProperStrand	13	chr7	28813857	28815127	LTR	RMER19C	ERVK	chr7RMER19C28813816	ProperStrand	18	11	-inf
chr17	39846721	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	21216400	21216448	LTR	RLTR14-int	ERV1	chr18RLTR14-int21216255	NonProperStrand	1	1	-inf
chr13	9834308	9834370	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr5	125017650	125017738	protein_coding	Ddx55	intron	ENSMUSG00000029389	NonProperStrand	14	1	-12.0677
chr17	39847845	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	121886857	121886947	SINE	B4A	B4	chr8B4A121886851	NonProperStrand	1	1	-inf
chr11	70898014	70898063	LINE	L1Md_T	L1	chr11L1Md_T70896257	NonProperStrand	1	chr14	19790336	19791508	LINE	Lx2	L1	chr14Lx219788632	ProperStrand	19	1	-inf
chr8	18685099	18685211	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr9	20444304	20444331	protein_coding	Fbxl12	intron	ENSMUSG00000066892	ProperStrand	9	1	-10.7792
chr3	43255232	43255332	LINE	Lx3A	L1	chr3Lx3A43255021	NonProperStrand	1	chr3	43254749	43254839	LTR	RLTR22_Mur	ERVK	chr3RLTR22_Mur43254769	ProperStrand	1	1	-inf
chr12	102573982	102574082	LINE	L1_Mus1	L1	chr12L1_Mus1102572473	ProperStrand	12	chr12	102579131	102580329	SINE	RSINE1	B4	chr12RSINE1102580223	NonProperStrand	3	3	-inf
chr7	100100676	100106574	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n100106502	ProperStrand	5	chr9	109875716	109875850	protein_coding	Mtap4	intron	ENSMUSG00000032479	ProperStrand	91	1	-16.3893
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr4	43492786	43492808	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-4.9289
chr1	7508713	7508803	LTR	RLTR9E	ERVK	chr1RLTR9E7508719	ProperStrand	1	chr1	7508589	7508689	LTR	RMER13B	ERVK	chr1RMER13B7508603	ProperStrand	1	1	-inf
chr17	39845998	39846046	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr17	66147762	66147836	protein_coding	Ppp4r1	intron	ENSMUSG00000061950	ProperStrand	30	1	-3.1847
chr12	13653171	13653261	LINE	L1Md_F2	L1	chr12L1Md_F213652075	NonProperStrand	1	chr10	122565791	122565891	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-inf
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr4	148564116	148564609	protein_coding	Kif1b	intron	ENSMUSG00000063077	NonProperStrand	70	1	-9.6353
chr3	104799566	104799745	SINE	B1_Mus2	Alu	chr3B1_Mus2104799657	NonProperStrand	4	chr3	104799464	104799564	SINE	B3A	B2	chr3B3A104799450	NonProperStrand	4	4	-inf
chr6	71955060	71955160	SINE	MIRb	MIR	chr6MIRb71955062	NonProperStrand	1	chr2	131919273	131919327	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-inf
chr5	146260994	146261024	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	10482592	10482632	protein_coding	Ttc23l	intron	ENSMUSG00000022249	ProperStrand	53	1	-5.3040
chr9	98566329	98566416	LINE	L1M4	L1	chr9L1M498566341	ProperStrand	1	chr9	98566089	98566145	SINE	B4	B4	chr9B498566086	NonProperStrand	1	1	-inf
chr17	24991593	24991621	protein_coding	Hagh	intron	ENSMUSG00000024158	NonProperStrand	8	chr17	24985855	24985979	protein_coding	Fahd1	utr3	ENSMUSG00000045316	ProperStrand	1	1	-inf
chr1	136364979	136365007	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr2	119474863	119474881	protein_coding	Nusap1	utr3	ENSMUSG00000027306	NonProperStrand	22	1	-12.4127
chr13	55245608	55245664	SINE	B3	B2	chr13B355245539	ProperStrand	1	chr9	118674952	118675006	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr7	103550709	103550898	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	chr14	33967378	33967815	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	15	-inf
chr17	39845879	39845985	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr5	24706504	24706522	protein_coding	Galntl5	intron	ENSMUSG00000028938	ProperStrand	26	1	-3.4481
chr11	29191631	29191683	LINE	L1_Mus3	L1	chr11L1_Mus329191434	ProperStrand	1	chr2	146309511	146309559	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	ProperStrand	101	1	-inf
chr19	5845050	5845150	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	chr9	119319069	119319159	protein_coding	Acvr2b	intron	ENSMUSG00000061393	NonProperStrand	42	1	-10.0824
chr11	50252982	50253013	LTR	MTE2a	MaLR	chr11MTE2a50252962	NonProperStrand	1	chr11	50242683	50242724	protein_coding	Rufy1	intron	ENSMUSG00000020375	NonProperStrand	40	1	-inf
chr4	118128198	118128266	protein_coding	Mpl	intron	ENSMUSG00000006389	ProperStrand	8	chr4	141202537	141202582	protein_coding	Plekhm2	intron	ENSMUSG00000028917	NonProperStrand	46	1	-16.7323
chr17	39847578	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	83648663	83648749	SINE	B1_Mus2	Alu	chr2B1_Mus283648669	NonProperStrand	1	1	-inf
chr14	18270321	18270404	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	56	chr2	5379306	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.6806
chr7	46672136	46672154	LINE	Lx6	L1	chr7Lx646670591	ProperStrand	1	chr12	78350926	78351043	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr2	168601392	168601413	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	chr12	80634503	80637549	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-13.5138
chr9	115291297	115291387	Simple_repeat	(TATATG)n	Simple_repeat	chr9(TATATG)n115291266	NonProperStrand	1	chr9	115291153	115291253	Simple_repeat	(TATG)n	Simple_repeat	chr9(TATG)n115291063	NonProperStrand	1	1	-inf
chr3	32709398	32709503	LINE	Lx6	L1	chr3Lx632709420	NonProperStrand	1	chr17	39847334	39847383	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	65597567	65597667	protein_coding	Astn2	intron	ENSMUSG00000028373	ProperStrand	24	chr14	33967478	33967568	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-13.4052
chr13	12291445	12291545	protein_coding	Mtr	intron	ENSMUSG00000021311	ProperStrand	8	chr19	32432187	32432277	protein_coding	Sgms1	intron	ENSMUSG00000040451	NonProperStrand	13	1	-20.3570
chr17	39846650	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	35601022	35601100	Satellite	ZP3AR	Satellite	chr7ZP3AR35600765	ProperStrand	2	1	-5.3533
chr9	87180754	87180788	LTR	MuRRS4-int	ERV1	chr9MuRRS4-int87180719	ProperStrand	1	chr9	87182093	87182152	LTR	MuRRS4-int	ERV1	chr9MuRRS4-int87180966	ProperStrand	1	1	-inf
chr1	143665513	143665581	LINE	L1Md_F2	L1	chr1L1Md_F2143664112	NonProperStrand	8	chr3	98320741	98320787	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int98320135	NonProperStrand	12	1	-19.4872
chr16	83129430	83129530	SINE	B3	B2	chr16B383129441	NonProperStrand	1	chr16	83130012	83130102	SINE	PB1D9	Alu	chr16PB1D983130032	NonProperStrand	1	1	-inf
chr19	10018856	10018956	LTR	MLT1D	MaLR	chr19MLT1D10018780	NonProperStrand	1	chr19	10018709	10018799	SINE	B3	B2	chr19B310018565	ProperStrand	1	1	-inf
chr17	39847272	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	10037826	10037865	protein_coding	Cspp1	intron	ENSMUSG00000056763	NonProperStrand	8	1	-3.3803
chr12	55974462	55974552	LTR	ORR1C1	MaLR	chr12ORR1C155974399	NonProperStrand	1	chr12	55974180	55974280	LTR	RLTR18B	ERVK	chr12RLTR18B55974045	ProperStrand	1	1	-inf
chr2	79462675	79462760	LINE	L2	L2	chr2L279462405	ProperStrand	3	chr11	35129576	35129649	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	2	-inf
chr17	39847438	39847528	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	33781375	33781475	processed_transcript	Gm20507	.	ENSMUSG00000092412	NonProperStrand	2	1	-5.4040
chr17	39848007	39848055	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	45751030	45751068	SINE	B3	B2	chr17B345750998	ProperStrand	1	1	-inf
chr7	5921509	5921609	LINE	Lx7	L1	chr7Lx75921414	NonProperStrand	1	chr7	5921640	5921730	LTR	RMER6A	ERVK	chr7RMER6A5921638	ProperStrand	1	1	-inf
chr17	39848668	39848706	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	32254716	32254793	protein_coding	Ptges2	intron	ENSMUSG00000026820	ProperStrand	12	2	-7.7740
chr2	140801551	140801641	protein_coding	Macrod2	intron	ENSMUSG00000068205	NonProperStrand	53	chr2	140818164	140818264	protein_coding	Macrod2	intron	ENSMUSG00000068205	ProperStrand	94	1	-11.3700
chr17	39846407	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	48805793	48807042	protein_coding	Gm6871	intron	ENSMUSG00000090744	NonProperStrand	10	2	-3.6091
chr11	12696248	12696370	LTR	IAPEz-int	ERVK	chr11IAPEz-int12695872	ProperStrand	2	chr17	39846486	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr17	39847680	39847716	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	156864880	156864907	LTR	RMER10B	ERVL	chr1RMER10B156864565	NonProperStrand	1	1	-inf
chr10	56004061	56004161	LINE	L1_Mur3	L1	chr10L1_Mur356003921	ProperStrand	3	chr10	56003770	56003860	SINE	B1_Mm	Alu	chr10B1_Mm56003775	ProperStrand	3	3	-inf
chr8	67675248	67675338	LTR	RMER19C	ERVK	chr8RMER19C67674874	ProperStrand	1	chr8	67674729	67674829	SINE	RSINE1	B4	chr8RSINE167674758	ProperStrand	1	1	-inf
chr6	108533241	108533361	lincRNA	0610040F04Rik	intron	ENSMUSG00000087341	NonProperStrand	17	chr16	93762328	93762345	protein_coding	Dopey2	exon	ENSMUSG00000022946	ProperStrand	55	1	-14.7595
chr4	4418320	4418410	LINE	Lx5	L1	chr4Lx54418289	NonProperStrand	1	chr4	4418627	4418727	LINE	Lx5	L1	chr4Lx54418527	NonProperStrand	1	1	-inf
chrX	38549272	38549624	LTR	RLTR8	ERVK	chrXRLTR838549521	ProperStrand	1	chr5	135911343	135911389	protein_coding	Hip1	intron	ENSMUSG00000039959	ProperStrand	226	1	-inf
chr4	144988005	144988035	LINE	L1Md_A	L1	chr4L1Md_A144983830	NonProperStrand	9	chr4	145013100	145013170	processed_transcript	Gm13227	.	ENSMUSG00000085101	NonProperStrand	42	1	-16.6547
chr17	39846406	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	101986134	102196949	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	14	-11.7476
chr6	60608904	60609004	LINE	L1Md_F3	L1	chr6L1Md_F360608468	ProperStrand	2	chr6	60609207	60609297	LTR	RLTR11A	ERVK	chr6RLTR11A60609028	ProperStrand	2	2	-inf
chr11	60276449	60276549	protein_coding-noncoding	Drg2	utr5	ENSMUSG00000020537	NonProperStrand	2	chr11	60276546	60276636	protein_coding	Drg2	intron	ENSMUSG00000020537	NonProperStrand	18	2	-inf
chr17	33936159	33936198	SINE	B2_Mm2	B2	chr17B2_Mm233936100	ProperStrand	1	chr2	5379132	5379177	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr7	100097480	100097556	LINE	L1_Mur2	L1	chr7L1_Mur2100097388	ProperStrand	1	chr7	100097353	100097397	LTR	ORR1B1	MaLR	chr7ORR1B1100096953	NonProperStrand	1	1	-inf
chr4	43492945	43493035	SINE	B3	B2	chr4B343492960	NonProperStrand	660	chr6	71856935	71857035	protein_coding	Ptcd3	intron	ENSMUSG00000063884	NonProperStrand	31	3	-19.7578
chr14	19278161	19278204	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr19	46830895	46830962	LTR	RLTR47_MM	ERV1	chr19RLTR47_MM46830761	ProperStrand	1	1	-inf
chr16	83836482	83836572	LINE	Lx8	L1	chr16Lx883836505	NonProperStrand	1	chr16	83836163	83836263	SINE	RSINE1	B4	chr16RSINE183836176	NonProperStrand	1	1	-inf
chr13	64150451	64150495	LINE	L1MB5	L1	chr13L1MB564150451	NonProperStrand	5	chr13	64150261	64150325	SINE	B4A	B4	chr13B4A64150259	NonProperStrand	1	1	-inf
chrX	52266742	52266842	LINE	L1_Mus1	L1	chrXL1_Mus152265986	NonProperStrand	1	chrX	52266889	52266979	LTR	RLTR9E	ERVK	chrXRLTR9E52266913	ProperStrand	1	1	-inf
chr1	33782007	33782048	protein_coding-noncoding	Rab23	utr5	ENSMUSG00000004768	NonProperStrand	2	chr1	33779127	33779163	protein_coding	Rab23	intron	ENSMUSG00000004768	NonProperStrand	14	1	-19.5799
chr14	120391625	120391701	SINE	PB1D7	Alu	chr14PB1D7120391577	ProperStrand	1	chr12	8750296	8750313	protein_coding-noncoding	Pum2	utr5	ENSMUSG00000020594	ProperStrand	1	1	-inf
chr19	3877819	3878437	protein_coding-noncoding	Chka	utr5	ENSMUSG00000024843	ProperStrand	20	chr19	3878589	3880894	protein_coding	Chka	intron	ENSMUSG00000024843	ProperStrand	73	2	-inf
chr2	33322413	33322503	protein_coding	Zbtb43	intron	ENSMUSG00000026788	ProperStrand	48	chr3	107283656	107283756	protein_coding	Slc6a17	intron	ENSMUSG00000027894	ProperStrand	46	1	-13.0092
chr6	91083719	91083772	LTR	RLTR19-int	ERVK	chr6RLTR19-int91083565	ProperStrand	2	chr12	78350926	78351021	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-13.3256
chr4	43492799	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr11	55402062	55405231	protein_coding	Glra1	intron	ENSMUSG00000000263	ProperStrand	26	1	-8.7722
chr11	9140625	9140695	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	chr14	100276352	100276412	protein_coding	Klf12	intron	ENSMUSG00000072294	ProperStrand	41	1	-12.3973
chr13	99431725	99431812	LTR	RLTR11A	ERVK	chr13RLTR11A99431477	NonProperStrand	2	chr17	39846411	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr13	64362805	64362937	protein_coding	Cdc14b	intron	ENSMUSG00000033102	ProperStrand	27	chr8	122487118	122487134	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-7.8069
chr14	17624430	17624520	protein_coding	Rarb	intron	ENSMUSG00000017491	NonProperStrand	9	chr14	14098852	14098952	protein_coding	Gm5087	intron	ENSMUSG00000051729	ProperStrand	16	1	-18.6583
chr5	105787924	105787967	LTR	ORR1A2	MaLR	chr5ORR1A2105787660	ProperStrand	2	chr5	105789414	105789467	LTR	RLTR13A2	ERVK	chr5RLTR13A2105789096	ProperStrand	4	1	-22.1285
chr19	36375370	36375409	LINE	L2a	L2	chr19L2a36375312	ProperStrand	1	chr2	5379296	5379345	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	39843730	39843800	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	mmu-miR-23a-3p	0	21	miRNA	mmu-miR-23a-3p	.	mmu-miR-23a-3p	ProperStrand	1	1	-inf
chr17	39846580	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	77910871	77910888	protein_coding	Gcm1	intron	ENSMUSG00000023333	ProperStrand	2	1	-5.3533
chr4	94277269	94277359	LTR	RLTR18	ERVK	chr4RLTR1894277087	NonProperStrand	1	chr4	94276812	94276912	LTR	RLTR25B	ERVK	chr4RLTR25B94276373	NonProperStrand	1	1	-inf
chr3	79567509	79567571	LINE	MusHAL1	L1	chr3MusHAL179567299	ProperStrand	3	chr17	39847738	39847810	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39848598	39848705	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	45721230	45721259	LTR	MTEb-int	MaLR	chr5MTEb-int45721124	ProperStrand	1	1	-inf
chr8	84970292	84970339	LTR	MLT1A0	MaLR	chr8MLT1A084970294	NonProperStrand	2	chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr17	39848250	39848354	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	91539002	91539055	protein_coding	Atg13	intron	ENSMUSG00000027244	NonProperStrand	12	1	-4.3503
chr14	57817184	57817284	SINE	ID_B1	B4	chr14ID_B157817129	NonProperStrand	1	chr14	57817319	57817409	SINE	PB1D10	Alu	chr14PB1D1057817303	NonProperStrand	1	1	-inf
chr16	58472760	58472776	protein_coding	St3gal6	intron	ENSMUSG00000022747	NonProperStrand	3	chr16	58463839	58463958	protein_coding	Dcbld2	intron	ENSMUSG00000035107	ProperStrand	36	1	-19.7959
chr17	35149777	35149991	protein_coding	Vars	exon	ENSMUSG00000007029	NonProperStrand	53	chr11	120673134	120673224	protein_coding	Fasn	intron	ENSMUSG00000025153	NonProperStrand	11	1	-15.7419
chr11	12444281	12444385	LTR	RMER17C-int	ERVK	chr11RMER17C-int12444284	ProperStrand	7	chr11	12444066	12444248	LTR	RMER17C	ERVK	chr11RMER17C12443963	ProperStrand	5	3	-inf
chr9	21267017	21268309	protein_coding	Dnm2	intron	ENSMUSG00000033335	ProperStrand	26	chr14	11899571	11899597	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-9.5577
chr4	94965496	94965572	LTR	ORR1C2	MaLR	chr4ORR1C294965419	ProperStrand	1	chr4	94965614	94965701	Low_complexity	GA-rich	Low_complexity	chr4GA-rich94965626	NonProperStrand	1	1	-inf
chr3	25149532	25149632	LINE	L1Md_T	L1	chr3L1Md_T25148951	NonProperStrand	1	chr3	25150009	25150099	LTR	IAPLTR2a	ERVK	chr3IAPLTR2a25149742	ProperStrand	1	1	-inf
chr16	8692432	8692451	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr11	70920944	70923190	protein_coding	Nlrp1a	intron	ENSMUSG00000069830	NonProperStrand	19	1	-10.9931
chr8	57958351	57958367	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr13	44869630	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.3108
chr2	174286572	174286646	protein_coding	Atp5e	utr3	ENSMUSG00000016252	ProperStrand	2	chr2	20614884	20614930	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-16.1046
chr3	30692639	30692712	protein_coding	Sec62	intron	ENSMUSG00000027706	NonProperStrand	29	chr12	109654402	109655901	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-9.2544
chr1	63480619	63480687	LINE	CR1_Mam	CR1	chr1CR1_Mam63480598	NonProperStrand	5	chrX	113583461	113583484	protein_coding	Cpxcr1	intron	ENSMUSG00000072995	ProperStrand	3	1	-inf
chr6	98965206	98965306	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	chr2	30454743	30454833	protein_coding	Cstad	intron	ENSMUSG00000047363	ProperStrand	17	2	-19.5258
chr19	41914457	41914507	SINE	B1_Mus1	Alu	chr19B1_Mus141914470	ProperStrand	1	chr19	41914309	41914349	SINE	RSINE1	B4	chr19RSINE141914219	ProperStrand	1	1	-inf
chr12	75851472	75851562	SINE	B3	B2	chr12B375851388	NonProperStrand	1	chr12	75851631	75851731	SINE	B3	B2	chr12B375851650	ProperStrand	1	1	-inf
chr13	59585362	59586163	protein_coding	Agtpbp1	intron	ENSMUSG00000021557	NonProperStrand	51	chr13	97190557	97190597	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.4390
chrX	150537585	150537684	LINE	L1Md_A	L1	chrXL1Md_A150537307	ProperStrand	1	chr7	73494196	73494229	protein_coding	Lrrk1	intron	ENSMUSG00000015133	ProperStrand	120	1	-inf
chr8	70895784	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr4	126139532	126139553	protein_coding	Eif2c1	intron	ENSMUSG00000041530	NonProperStrand	23	2	-20.6159
chr14	60813223	60813284	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr7	111076156	111076227	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-8.7537
chr11	20649637	20649740	LINE	Lx8	L1	chr11Lx820649232	ProperStrand	2	chr5	146261174	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-12.4657
chr14	47147576	47147676	LINE	L1MA4	L1	chr14L1MA447147360	NonProperStrand	1	chr6	26047909	26047999	LTR	MTC	MaLR	chr6MTC26047861	NonProperStrand	1	1	-inf
chr12	59792702	59792719	LINE	L1Md_T	L1	chr12L1Md_T59787854	ProperStrand	2	chr17	39847444	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr3	17560945	17561035	LINE	L1VL4	L1	chr3L1VL417560879	ProperStrand	1	chr3	17560805	17560905	LTR	RLTR13D6	ERVK	chr3RLTR13D617560692	NonProperStrand	1	1	-inf
chr17	39847381	39847400	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	137830229	137830276	LTR	RMER20B	ERVK	chr6RMER20B137829731	ProperStrand	2	1	-5.4040
chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr11	80389264	80389291	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	1	-10.8652
chr10	29230232	29230258	protein_coding	Rspo3	intron	ENSMUSG00000019880	NonProperStrand	17	chr11	54873779	54873875	protein_coding	Ccdc69	intron	ENSMUSG00000049588	NonProperStrand	29	1	-16.0388
chr15	83572249	83572278	SINE	RSINE1	B4	chr15RSINE183572219	NonProperStrand	2	chr6	93995770	93995809	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-13.7207
chrX	38772257	38772347	protein_coding	Gria3	intron	ENSMUSG00000001986	NonProperStrand	7	chrX	40683108	40683208	protein_coding	Odz1	intron	ENSMUSG00000016150	NonProperStrand	9	1	-20.6217
chr17	39847620	39847675	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	126792941	126795280	LTR	IAPEz-int	ERVK	chr2IAPEz-int126791092	ProperStrand	5	1	-3.2379
chr11	109011745	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	110122108	110122130	protein_coding	Olfr577	exon	ENSMUSG00000043354	NonProperStrand	5	1	-11.2339
chr8	40908433	40908543	LINE	L1_Mur2	L1	chr8L1_Mur240908442	ProperStrand	1	chr17	39846766	39846801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	113837052	113837152	SINE	B4A	B4	chr5B4A113836873	NonProperStrand	4	chr5	113837208	113837298	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n113837145	NonProperStrand	4	4	-inf
chr16	35981688	35981761	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr16	23108954	23109017	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-8.0118
chr2	180211724	180211795	LTR	ORR1A3	MaLR	chr2ORR1A3180211597	ProperStrand	1	chr9	59675689	59678079	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr17	39847551	39847636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	100140194	100140269	SINE	B4A	B4	chr3B4A100140171	ProperStrand	1	1	-inf
chr1	30148009	30148109	LTR	LTRIS5	ERV1	chr1LTRIS530147963	NonProperStrand	1	chr1	30145292	30145382	LTR	MURVY-int	ERV1	chr1MURVY-int30140510	NonProperStrand	2	1	-inf
chr9	123461871	123462042	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	73012734	73012915	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	4	-4.5369
chr11	12384504	12384587	LTR	RLTR20B2	ERVK	chr11RLTR20B212384388	NonProperStrand	1	chr13	97190551	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr12	78350926	78351016	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr1	34852042	34852142	protein_coding	Arhgef4	intron	ENSMUSG00000037509	ProperStrand	26	1	-7.5621
chr19	4196042	4196110	protein_coding	Rad9	intron	ENSMUSG00000024824	ProperStrand	25	chr19	4194940	4194988	protein_coding	Ppp1ca	intron	ENSMUSG00000040385	NonProperStrand	3	1	-19.8679
chr8	110882137	110882176	DNA	MER53	hAT	chr8MER53110882128	ProperStrand	1	chr1	13636633	13636682	protein_coding	Lactb2	intron	ENSMUSG00000025937	ProperStrand	47	1	-inf
chr6	108525793	108525833	DNA	MER2	MER2_type	chr6MER2108525717	NonProperStrand	1	chr4	146909412	146909473	LTR	MYSERV6-int	ERVK	chr4MYSERV6-int146906068	ProperStrand	5	1	-inf
chr1	72226328	72226356	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	chr6	71882631	71882685	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-9.8252
chr11	107424063	107424118	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	chr11	97678318	97678365	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	1	-8.1241
chr17	70963742	70963796	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr1	106791184	106791269	protein_coding	Cdh20	intron	ENSMUSG00000050840	NonProperStrand	61	1	-6.1749
chr17	45571567	45571784	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	chr11	106917884	106917946	protein_coding	Bptf	intron	ENSMUSG00000040481	ProperStrand	25	1	-13.0959
chr12	118709796	118709886	LINE	L1_Mus1	L1	chr12L1_Mus1118709684	ProperStrand	1	chr16	93587659	93587759	protein_coding	Setd4	intron	ENSMUSG00000022948	NonProperStrand	4	1	-inf
chr14	27248275	27344369	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr9	110281288	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	2	-8.6611
chr17	39846584	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	8385969	8388989	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	ProperStrand	10	2	-3.6091
chrX	109279962	109280062	LINE	L1Md_F3	L1	chrXL1Md_F3109277514	ProperStrand	2	chr3	19574669	19574759	protein_coding	Trim55	intron	ENSMUSG00000060913	ProperStrand	5	2	-inf
chrX	20669201	20670232	LINE	L1Md_F3	L1	chrXL1Md_F320668971	NonProperStrand	7	chrX	20670227	20670327	LINE	Lx2A1	L1	chrXLx2A120670137	NonProperStrand	8	3	-inf
chr1	136364891	136364963	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr11	35955841	35955875	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-6.7543
chr16	94588508	94588537	protein_coding	Pigp	intron	ENSMUSG00000022940	NonProperStrand	42	chr1	91528252	91528371	protein_coding	Agap1	intron	ENSMUSG00000055013	ProperStrand	37	1	-13.7218
chr9	57750837	57750927	LTR	MTD	MaLR	chr9MTD57750844	ProperStrand	10	chr9	57750755	57750855	SINE	B1_Mm	Alu	chr9B1_Mm57750699	NonProperStrand	1	1	-inf
chr8	41013789	41013914	LINE	L1Md_F2	L1	chr8L1Md_F241013572	NonProperStrand	1	chr16	7078498	7078518	protein_coding	Rbfox1	intron	ENSMUSG00000008658	ProperStrand	11	1	-inf
chr13	55314212	55314302	protein_coding	Nsd1	intron	ENSMUSG00000021488	ProperStrand	81	chr9	48479378	48480491	protein_coding	Zbtb16	intron	ENSMUSG00000066687	ProperStrand	16	1	-14.1078
chrX	103471817	103471917	LINE	L1Md_F2	L1	chrXL1Md_F2103469145	NonProperStrand	25	chr1	93366728	93366818	LTR	MTB-int	MaLR	chr1MTB-int93366732	NonProperStrand	2	1	-22.2156
chr3	60486983	60487083	LTR	IAPEz-int	ERVK	chr3IAPEz-int60486830	NonProperStrand	1	chr3	60487186	60487276	LTR	IAPEz-int	ERVK	chr3IAPEz-int60487107	NonProperStrand	1	1	-inf
chr12	78350879	78351023	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	1	-6.5090
chr19	36892255	36892278	LINE	Lx8	L1	chr19Lx836892085	ProperStrand	2	chr2	156178238	156178351	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	NonProperStrand	55	1	-19.1124
chr17	39847619	39847637	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	25886737	25886766	SINE	MIR	MIR	chr14MIR25886712	NonProperStrand	1	1	-inf
chr17	25905192	25905227	LTR	MTD	MaLR	chr17MTD25905003	ProperStrand	1	chr11	22850012	22850037	protein_coding	Commd1	intron	ENSMUSG00000051355	ProperStrand	127	1	-inf
chr7	121696522	121696622	protein_coding	Cyp2r1	exon	ENSMUSG00000030670	ProperStrand	5	chr16	34090737	34090827	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-14.3047
chr15	85463163	85463203	LINE	L1MB4	L1	chr15L1MB485462903	NonProperStrand	2	chr17	39847320	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr5	137112596	137112686	SINE	B1F1	Alu	chr5B1F1137112570	ProperStrand	1	chr5	137113031	137113131	SINE	MIR	MIR	chr5MIR137112965	ProperStrand	1	1	-inf
chr4	39705458	39705516	LINE	L1Md_A	L1	chr4L1Md_A39702128	ProperStrand	2	chr17	83801095	83801184	protein_coding	Eml4	intron	ENSMUSG00000032624	ProperStrand	63	2	-inf
chr9	59668221	59668252	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr2	130443616	130443725	protein_coding	Fastkd5	intron	ENSMUSG00000079043	NonProperStrand	15	1	-9.0820
chr17	4082126	4082250	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	97327407	97327497	protein_coding	Lrrc4c	intron	ENSMUSG00000050587	NonProperStrand	42	9	-inf
chr9	39738764	39738864	LINE	Lx3_Mus	L1	chr9Lx3_Mus39737853	ProperStrand	1	chr9	39739138	39739228	Simple_repeat	(GAAA)n	Simple_repeat	chr9(GAAA)n39739038	NonProperStrand	1	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr12	105649040	105649477	protein_coding	Serpina3n	intron	ENSMUSG00000021091	NonProperStrand	9	1	-15.7259
chr17	39846454	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	31847219	31847236	SINE	B1_Mur3	Alu	chr17B1_Mur331847134	ProperStrand	5	1	-3.1907
chr18	35584714	35584792	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr4	147241856	147241927	protein_coding	Miip	intron	ENSMUSG00000029022	NonProperStrand	2	1	-15.8842
chr4	136254386	136254460	protein_coding	Ephb2	intron	ENSMUSG00000028664	NonProperStrand	64	chr9	69091668	69091732	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-9.4588
chr7	99478166	99478272	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	chr9	57626864	57626913	protein_coding	Gm17231	intron	ENSMUSG00000091908	NonProperStrand	18	1	-9.8582
chr4	91325287	91325334	LINE	L1Md_T	L1	chr4L1Md_T91321308	NonProperStrand	6	chr17	25076450	25076520	SINE	B2_Mm2	B2	chr17B2_Mm225076399	ProperStrand	1	1	-inf
chr17	35384386	35384486	protein_coding	Ddx39b	intron	ENSMUSG00000019432	NonProperStrand	9	chr17	86391248	86391338	protein_coding	Srbd1	intron	ENSMUSG00000024135	NonProperStrand	31	1	-17.2579
chr14	54427199	54428615	LINE	L2	L2	chr14L254427198	ProperStrand	2	chr14	54429649	54429690	LTR	RMER19C	ERVK	chr14RMER19C54429634	NonProperStrand	1	1	-inf
chr9	123461882	123462126	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	36700142	36703718	protein_coding	Fam178b	intron	ENSMUSG00000046337	ProperStrand	47	2	-3.0215
chr17	39847670	39847732	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	118059528	118059545	lincRNA	Gm17399	exon	ENSMUSG00000092135	ProperStrand	2	1	-5.4040
chr11	98030457	98030567	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	chr12	38861381	38865556	protein_coding	Dgkb	intron	ENSMUSG00000036095	NonProperStrand	29	1	-12.1503
chr17	39846932	39846975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	52652089	52652199	LTR	MLT1B	MaLR	chr1MLT1B52651967	NonProperStrand	2	1	-5.3533
chrX	52460512	52460617	LTR	RMER17D	ERVK	chrXRMER17D52460305	NonProperStrand	1	chrX	52444922	52444971	pseudogene	Gm7974	.	ENSMUSG00000080889	NonProperStrand	15	1	-inf
chr2	5379267	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chrX	52924073	52924150	pseudogene	Gm16404	.	ENSMUSG00000081482	ProperStrand	23	1	-6.4307
chr8	109875061	109875123	protein_coding	Nfat5	intron	ENSMUSG00000003847	ProperStrand	41	chr13	97190562	97190617	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8678
chr9	15278410	15278539	LINE	L1_Mus1	L1	chr9L1_Mus115278086	NonProperStrand	1	chr9	123461882	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	17221334	17221367	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr12	78350926	78351009	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-7.0828
chr17	39848017	39848060	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	54526064	54526163	Other	RMER1B	Other	chr6RMER1B54526035	ProperStrand	1	1	-inf
chr17	39846491	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	98018078	98018123	SINE	ID_B1	B4	chr3ID_B198017947	ProperStrand	2	1	-5.3533
chr7	87008932	87009062	LTR	MTB-int	MaLR	chr7MTB-int87008745	NonProperStrand	1	chr7	87032985	87033015	protein_coding	Ap3s2	intron	ENSMUSG00000063801	ProperStrand	5	1	-inf
chr6	94203485	94203610	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr6	118713340	118715912	protein_coding	Cacna1c	intron	ENSMUSG00000051331	NonProperStrand	17	1	-8.8210
chr5	135198242	135198325	protein_coding	Eln	intron	ENSMUSG00000029675	NonProperStrand	64	chr18	34906072	34907626	protein_coding	Cdc25c	intron	ENSMUSG00000044201	ProperStrand	42	2	-20.4760
chr9	58229107	58229139	DNA	MER44D	MER2_type	chr9MER44D58229077	NonProperStrand	1	chr9	58229571	58229643	LINE	Lx8	L1	chr9Lx858229540	NonProperStrand	1	1	-inf
chr17	25624738	25624830	LINE	L1MB3	L1	chr17L1MB325624707	ProperStrand	1	chr17	39847552	39847570	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	130702177	130702231	LTR	RMER21B	ERV1	chr4RMER21B130702129	ProperStrand	1	chr4	130702738	130702789	SINE	B4A	B4	chr4B4A130702633	ProperStrand	1	1	-inf
chr9	20945633	20945733	protein_coding	Cdc37	intron	ENSMUSG00000019471	ProperStrand	31	chr9	56223571	56223661	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-9.8284
chr17	87979362	87979452	LTR	IAPEY2_LTR	ERVK	chr17IAPEY2_LTR87979150	NonProperStrand	2	chr17	87979479	87979579	LTR	RMER16-int	ERVK	chr17RMER16-int87979504	NonProperStrand	8	1	-23.4058
chr17	39847747	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	6931764	6931798	SINE	B1_Mus1	Alu	chr7B1_Mus16931693	ProperStrand	1	1	-inf
chr2	149935284	149935389	LINE	Lx7	L1	chr2Lx7149935029	NonProperStrand	1	chr17	39846729	39846760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	30967282	30967382	LTR	RLTR46	ERVK	chr7RLTR4630967112	NonProperStrand	3	chr7	30967393	30967483	SINE	B1_Mus2	Alu	chr7B1_Mus230967404	ProperStrand	3	3	-inf
chr17	70963682	70963843	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	56223571	56223926	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	4	-9.9681
chr16	32463374	32463474	protein_coding	Pcyt1a	intron	ENSMUSG00000005615	ProperStrand	19	chr12	101930746	101930836	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	1	-13.3499
chr1	127931591	127931691	protein_coding-noncoding	Nckap5	utr3	ENSMUSG00000049690	ProperStrand	1	chr1	127931782	127931872	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-inf
chr17	39847278	39847311	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	76581608	76581631	protein_coding	Arhgap39	intron	ENSMUSG00000033697	NonProperStrand	6	1	-3.9545
chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	75783027	75783105	Low_complexity	A-rich	Low_complexity	chr2A-rich75782954	ProperStrand	1	1	-inf
chr9	109933664	109939746	protein_coding	Mtap4	intron	ENSMUSG00000032479	ProperStrand	91	chr9	109939742	109942012	protein_coding	Mtap4	intron	ENSMUSG00000047011	ProperStrand	2	2	-inf
chr17	13000369	13000497	antisense	Airn	.	ENSMUSG00000078247	ProperStrand	40	chr2	33027245	33027278	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-9.0314
chr17	39846581	39846706	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	118441572	118441591	LTR	RLTR10-int	ERVK	chrXRLTR10-int118441464	ProperStrand	1	1	-inf
chr13	62675520	62675616	LINE	Lx2A1	L1	chr13Lx2A162674956	NonProperStrand	2	chr17	39846775	39846835	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr18	61577199	61577243	SINE	ID	ID	chr18ID61577211	NonProperStrand	1	chr6	108070059	108070128	protein_coding	Sumf1	intron	ENSMUSG00000030101	ProperStrand	10	1	-inf
chr2	63633508	63633608	LINE	L2	L2	chr2L263633511	ProperStrand	1	chr2	63633382	63633472	LINE	Lx5	L1	chr2Lx563633311	ProperStrand	1	1	-inf
chr15	81360718	81360765	LTR	ERVL-B4-int	ERVL	chr15ERVL-B4-int81360710	ProperStrand	1	chr15	81360378	81360435	SINE	B1F1	Alu	chr15B1F181360368	ProperStrand	1	1	-inf
chr11	97560235	97560318	protein_coding	Pcgf2	intron	ENSMUSG00000018537	ProperStrand	13	chr11	97574678	97574751	protein_coding	Psmb3	intron	ENSMUSG00000069744	NonProperStrand	4	1	-inf
chr1	132979827	132979872	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	chr2	105727747	105727850	protein_coding	Elp4	intron	ENSMUSG00000027167	ProperStrand	28	1	-11.4853
chr9	13108867	13108957	LINE	Lx6	L1	chr9Lx613108886	NonProperStrand	1	chr9	13108270	13108370	LTR	RLTR11A	ERVK	chr9RLTR11A13108268	ProperStrand	1	1	-inf
chr2	13985650	13985740	LTR	RMER6A	ERVK	chr2RMER6A13985495	ProperStrand	1	chr2	13985775	13985875	SINE	B1_Mur3	Alu	chr2B1_Mur313985757	ProperStrand	1	1	-inf
chr13	29589148	29589188	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr10	81369223	81369384	protein_coding	Zfp781	intron	ENSMUSG00000062540	ProperStrand	33	1	-9.1511
chr11	97502224	97502314	Simple_repeat	(CATG)n	Simple_repeat	chr11(CATG)n97502221	ProperStrand	1	chr11	97502400	97502500	Simple_repeat	(CATG)n	Simple_repeat	chr11(CATG)n97502426	ProperStrand	1	1	-inf
chr15	58966067	58966167	SINE	RSINE1	B4	chr15RSINE158966015	NonProperStrand	9	chr15	58966173	58966263	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n58966174	NonProperStrand	9	9	-inf
chr15	9145647	9145679	LTR	ETnERV2-int	ERVK	chr15ETnERV2-int9145183	NonProperStrand	2	chr15	9144860	9144957	LTR	ETnERV3-int	ERVK	chr15ETnERV3-int9143475	NonProperStrand	1	1	-inf
chr7	67360353	67360443	LINE	L1Md_A	L1	chr7L1Md_A67359426	ProperStrand	1	chr7	67360474	67360574	LINE	Lx6	L1	chr7Lx667360473	ProperStrand	1	1	-inf
chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	20645657	20646726	LTR	ORR1B2	MaLR	chr9ORR1B220646549	NonProperStrand	1	1	-inf
chr5	139269090	139269153	protein_coding	Fam20c	intron	ENSMUSG00000025854	ProperStrand	78	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.9952
chr17	39846418	39846722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	21750398	21750495	protein_coding	Olfr1361	exon	ENSMUSG00000049737	ProperStrand	6	2	-5.1926
chr4	54946989	54947076	SINE	B3A	B2	chr4B3A54946922	NonProperStrand	1	chr4	54947241	54947284	SINE	PB1D9	Alu	chr4PB1D954947183	NonProperStrand	1	1	-inf
chrX	7882148	7882164	LINE	L1Md_F2	L1	chrXL1Md_F27882024	NonProperStrand	1	chr11	17221330	17221356	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	1	-inf
chr17	35506117	35506171	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	chr9	40803994	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-6.0354
chr18	77057576	77057666	LINE	L1ME5	L1	chr18L1ME577057434	ProperStrand	1	chr6	82759495	82759595	LTR	ORR1D1	MaLR	chr6ORR1D182759184	NonProperStrand	1	1	-inf
chr13	103743467	103743567	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	chr5	90264125	90264637	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	1	-9.9975
chr14	19278161	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr6	38048773	38048850	protein_coding	Atp6v0a4	intron	ENSMUSG00000038600	ProperStrand	24	1	-13.4042
chr9	123462051	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	156052019	156052069	protein_coding	Zfp648	exon	ENSMUSG00000066797	ProperStrand	11	1	-4.1956
chr17	39846428	39846494	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	114460137	114460208	protein_coding	Dao	intron	ENSMUSG00000042096	ProperStrand	5	1	-3.1907
chr13	41005456	41005558	protein_coding	Gcnt2	intron	ENSMUSG00000021360	ProperStrand	52	chr9	64299505	64299541	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-11.0568
chr3	103052854	103054689	LTR	RMER15	ERVL	chr3RMER15103052744	ProperStrand	1	chr11	103062274	103062309	protein_coding	1700023F06Rik	intron	ENSMUSG00000020940	NonProperStrand	20	1	-inf
chr17	39846623	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	117058183	117060756	SINE	RSINE1	B4	chr10RSINE1117060616	NonProperStrand	3	2	-8.0300
chr13	55611515	55611537	protein_coding	Pdlim7	intron	ENSMUSG00000021493	NonProperStrand	20	chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.7119
chr15	57881263	57881401	protein_coding	Zhx1	intron	ENSMUSG00000022361	ProperStrand	13	chr14	52160779	52160796	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-13.7674
chr7	13436137	13436227	SINE	B4	B4	chr7B413436067	NonProperStrand	1	chr7	13436672	13436772	SINE	RSINE1	B4	chr7RSINE113436641	ProperStrand	1	1	-inf
chr15	79675191	79675281	LTR	ORR1E	MaLR	chr15ORR1E79675172	ProperStrand	3	chr15	79675310	79675410	SINE	B3	B2	chr15B379675313	ProperStrand	3	3	-inf
chr17	24223859	24223915	protein_coding	Pdpk1	intron	ENSMUSG00000024122	NonProperStrand	1	chr11	60203910	60203926	protein_coding	Lrrc48	intron	ENSMUSG00000056598	NonProperStrand	40	1	-inf
chr10	61691347	61691391	protein_coding	Tspan15	intron	ENSMUSG00000037031	NonProperStrand	51	chr13	97190569	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.4390
chr5	76596107	76596226	DNA	MER45R	Tip100	chr5MER45R76596124	ProperStrand	1	chr17	39846815	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	86903812	86903849	LINE	Lx8	L1	chr14Lx886903575	NonProperStrand	1	chr6	3201470	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr13	112578204	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr10	80249185	80249237	protein_coding	Dot1l	exon	ENSMUSG00000061589	ProperStrand	91	1	-3.4300
chr13	113319079	113319204	protein_coding	Il31ra	intron	ENSMUSG00000050377	NonProperStrand	14	chrX	52575114	52575135	pseudogene	Gm6660	.	ENSMUSG00000082182	NonProperStrand	15	1	-17.8106
chr10	13820250	13820340	protein_coding	Hivep2	intron	ENSMUSG00000015501	NonProperStrand	58	chr12	78350930	78351030	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-5.9627
chr9	110281286	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr12	3762195	3762315	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	1	-6.1256
chr7	29935295	29935404	protein_coding-noncoding	Rasgrp4	utr5	ENSMUSG00000030589	NonProperStrand	6	chr10	40377684	40377726	protein_coding	Ddo	intron	ENSMUSG00000063428	ProperStrand	39	1	-17.7699
chr12	73942071	73942161	SINE	B2_Mm2	B2	chr12B2_Mm273941962	NonProperStrand	2	chr9	123462058	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr2	163059303	163059337	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	chrX	162887634	162887687	protein_coding	Trappc2	intron	ENSMUSG00000079317	NonProperStrand	2	1	-15.8549
chr15	83233905	83233964	protein_coding	Pacsin2	intron	ENSMUSG00000016664	ProperStrand	107	chr16	35981617	35981640	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-8.7275
chr4	25784320	25784377	LINE	Lx9	L1	chr4Lx925784009	NonProperStrand	1	chr17	39847911	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	78350925	78459075	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr13	44869581	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	9	-5.8297
chr7	4531699	4531790	miRNA	AC161197.1	.	ENSMUSG00000077129	ProperStrand	6	chr7	4531499	4531655	protein_coding	Ptprh	intron	ENSMUSG00000035429	ProperStrand	27	6	-inf
chr3	36007588	36007648	LINE	L1Md_A	L1	chr3L1Md_A36005353	NonProperStrand	1	chr2	30817188	30817219	protein_coding	Tor1a	intron	ENSMUSG00000026849	NonProperStrand	22	1	-inf
chr5	100383876	100385166	DNA	URR1A	MER1_type	chr5URR1A100383740	NonProperStrand	2	chr17	39847723	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr2	4586422	4590647	SINE	B3	B2	chr2B34586393	NonProperStrand	2	chr2	4572366	4586377	protein_coding	Prpf18	intron	ENSMUSG00000039449	NonProperStrand	4	2	-inf
chr7	125671401	125671492	protein_coding-noncoding	Coq7	utr3	ENSMUSG00000030652	ProperStrand	10	chr13	97190586	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.7312
chrX	7731142	7731232	LTR	MT2B2	ERVL	chrXMT2B27731043	ProperStrand	1	chrX	7731047	7731147	SINE	B1_Mur3	Alu	chrXB1_Mur37731017	ProperStrand	1	1	-inf
chr18	38600576	38600687	protein_coding	Ndfip1	intron	ENSMUSG00000024425	NonProperStrand	104	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-10.8513
chr9	110939671	110939728	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	chr17	44655877	44655895	protein_coding	Runx2	intron	ENSMUSG00000039153	ProperStrand	9	1	-14.8111
chr11	4901162	4901210	protein_coding	Ap1b1	intron	ENSMUSG00000009090	ProperStrand	57	chr11	76417470	76417541	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	1	-9.4065
chr3	97767060	97767144	lincRNA	Gm5544	intron	ENSMUSG00000074388	NonProperStrand	7	chr18	73740468	73740542	protein_coding	Mex3c	intron	ENSMUSG00000037253	NonProperStrand	2	1	-21.4874
chr11	51743375	51743465	SINE	B1_Mur4	Alu	chr11B1_Mur451743360	ProperStrand	3	chr11	51743278	51743378	Simple_repeat	(TCTA)n	Simple_repeat	chr11(TCTA)n51743286	NonProperStrand	3	3	-inf
chr11	33754787	33754812	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	chr3	59120490	59120540	protein_coding	Med12l	utr3	ENSMUSG00000056476	ProperStrand	30	1	-14.4623
chr8	31149864	31149939	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr16	24983523	24983557	protein_coding	Lpp	utr3	ENSMUSG00000033306	ProperStrand	255	1	-8.6236
chr19	26972616	26972716	LTR	MTD	MaLR	chr19MTD26972623	ProperStrand	1	chr19	26972422	26972512	SINE	B2_Mm2	B2	chr19B2_Mm226972336	NonProperStrand	1	1	-inf
chr6	145057673	145057762	LTR	RLTR11B	ERVK	chr6RLTR11B145057591	ProperStrand	2	chr6	145057402	145057502	SINE	B1F1	Alu	chr6B1F1145057339	ProperStrand	1	1	-inf
chr2	125957937	125957983	protein_coding	4930525F21Rik	intron	ENSMUSG00000027209	NonProperStrand	29	chr6	29792591	29792660	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	ProperStrand	78	1	-12.9653
chr2	29889315	29889373	protein_coding-noncoding	Wdr34	utr3	ENSMUSG00000039715	ProperStrand	1	chr2	29889268	29889316	protein_coding	Wdr34	intron	ENSMUSG00000039715	ProperStrand	1	1	-inf
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	151508408	151508539	antisense	BC052486	.	ENSMUSG00000087035	NonProperStrand	5	1	-3.2379
chr6	52630291	52640202	Low_complexity	GA-rich	Low_complexity	chr6GA-rich52630144	NonProperStrand	2	chr6	52640214	52640304	SINE	PB1D10	Alu	chr6PB1D1052640172	NonProperStrand	2	2	-inf
chr1	183424967	183424984	LTR	IAPEz-int	ERVK	chr1IAPEz-int183423376	ProperStrand	1	chr1	133018445	133018503	SINE	B1_Mm	Alu	chr1B1_Mm133018384	ProperStrand	1	1	-inf
chr9	123461893	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	65541056	65547827	protein_coding	Klhl5	intron	ENSMUSG00000054920	ProperStrand	40	2	-3.4283
chr8	47338766	47338889	LINE	L1Md_F2	L1	chr8L1Md_F247338509	NonProperStrand	1	chr17	39847636	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	56806892	56806992	LINE	L1M2	L1	chr10L1M256806871	NonProperStrand	1	chr10	56807153	56807243	LINE	L1MA9	L1	chr10L1MA956807084	ProperStrand	1	1	-inf
chr13	114063089	114063126	LINE	L1Md_T	L1	chr13L1Md_T114062772	NonProperStrand	1	chr13	113984613	113984719	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-inf
chr7	23994171	23994194	LINE	L1Md_F2	L1	chr7L1Md_F223994132	ProperStrand	2	chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr4	147674015	147674107	LTR	ORR1A2	MaLR	chr4ORR1A2147673770	NonProperStrand	1	chr4	146126117	146126217	protein_coding-noncoding	Zfp600	utr5	ENSMUSG00000066007	ProperStrand	3	1	-inf
chr15	95952539	95952598	LINE	L2	L2	chr15L295952450	ProperStrand	1	chr4	26787014	26787070	LINE	Lx8	L1	chr4Lx826786903	ProperStrand	1	1	-inf
chr6	97246374	97246468	protein_coding	Frmd4b	intron	ENSMUSG00000030064	NonProperStrand	14	chr19	31084523	31084584	protein_coding	Prkg1	intron	ENSMUSG00000052920	NonProperStrand	44	1	-15.6156
chr17	27909620	27974951	LTR	MT2_Mm	ERVL	chr17MT2_Mm27974794	ProperStrand	2	chr17	28000274	28000294	protein_coding	Uhrf1bp1	intron	ENSMUSG00000039512	ProperStrand	171	1	-17.3956
chr18	41685480	41685501	Low_complexity	CT-rich	Low_complexity	chr18CT-rich41685384	ProperStrand	1	chr3	79195444	79195530	protein_coding	Gm17359	intron	ENSMUSG00000091685	NonProperStrand	22	1	-inf
chr5	115490281	115490351	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr6	125133758	125134582	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	78	1	-8.6293
chr13	65081319	65081409	LINE	L1Md_T	L1	chr13L1Md_T65080483	ProperStrand	1	chr13	65081515	65081615	LINE	Lx8	L1	chr13Lx865081483	ProperStrand	1	1	-inf
chr13	64193950	64194040	LTR	ORR1E	MaLR	chr13ORR1E64193938	NonProperStrand	1	chr4	75655898	75655998	protein_coding	Ptprd	intron	ENSMUSG00000028399	NonProperStrand	48	1	-inf
chr9	69993761	69993861	LINE	Lx8	L1	chr9Lx869993740	NonProperStrand	1	chr9	69993617	69993707	SINE	PB1D10	Alu	chr9PB1D1069993628	NonProperStrand	1	1	-inf
chr6	3201475	3201508	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	145905046	145905089	protein_coding	4930529M08Rik	intron	ENSMUSG00000037143	ProperStrand	37	1	-3.7789
chr12	102867267	102867367	LINE	L1_Mur2	L1	chr12L1_Mur2102866796	NonProperStrand	1	chr17	24720285	24720376	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-inf
chr4	106577103	106577186	LINE	L1MB3	L1	chr4L1MB3106577103	NonProperStrand	1	chr17	39847519	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	119790383	119790420	LINE	L1Md_F2	L1	chr13L1Md_F2119785400	NonProperStrand	3	chr17	39847655	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr14	55746534	55749335	LTR	MTE2b	MaLR	chr14MTE2b55746445	NonProperStrand	5	chr4	150443930	150443951	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-13.3844
chr11	88849285	88849332	protein_coding	Coil	exon	ENSMUSG00000033983	NonProperStrand	94	chr14	76118824	76118881	protein_coding	Cog3	intron	ENSMUSG00000034893	NonProperStrand	29	1	-12.5900
chr9	53691241	53691300	SINE	ID_B1	B4	chr9ID_B153691202	ProperStrand	1	chr3	88581052	88583850	pseudogene	5830417I10Rik	.	ENSMUSG00000078684	ProperStrand	52	1	-inf
chr16	8974417	8974507	LTR	MER90a	ERV1	chr16MER90a8974337	ProperStrand	1	chr16	8974768	8974868	SINE	B4	B4	chr16B48974783	NonProperStrand	1	1	-inf
chr17	39846576	39846653	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	49258252	49258301	SINE	B1_Mus2	Alu	chr6B1_Mus249258232	ProperStrand	2	1	-5.3533
chrX	95097791	95097881	LINE	L1Md_A	L1	chrXL1Md_A95097185	ProperStrand	1	chrX	95098231	95098331	LINE	Lx4B	L1	chrXLx4B95098203	ProperStrand	1	1	-inf
chr15	53215638	53215725	LTR	RLTR25A	ERVK	chr15RLTR25A53215385	NonProperStrand	2	chr17	39843655	39843711	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr7	110087917	110087994	LINE	Lx2B	L1	chr7Lx2B110087046	NonProperStrand	2	chr12	84342241	84342260	protein_coding	Dpf3	intron	ENSMUSG00000021221	ProperStrand	24	1	-20.2563
chr5	18111250	18111340	LINE	Lx2	L1	chr5Lx218111013	ProperStrand	2	chr5	18111458	18111558	LINE	Lx2	L1	chr5Lx218111481	ProperStrand	1	1	-inf
chr7	59352902	59352923	LINE	L1MA4	L1	chr7L1MA459352556	NonProperStrand	1	chr9	123461822	123461864	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	50908157	50908227	LINE	Lx5	L1	chr14Lx550906743	NonProperStrand	2	chr8	128720098	128720300	SINE	B4	B4	chr8B4128720032	NonProperStrand	1	1	-inf
chr5	144958491	144958581	protein_coding-noncoding	Tecpr1	utr3	ENSMUSG00000066621	ProperStrand	3	chr5	144958357	144958457	protein_coding	Tecpr1	intron	ENSMUSG00000066621	ProperStrand	58	3	-inf
chr6	3201470	3201493	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	119374801	119374864	protein_coding	1500003O03Rik	intron	ENSMUSG00000014077	NonProperStrand	37	1	-3.7789
chr5	33511462	33511506	LINE	L1MC3	L1	chr5L1MC333510876	NonProperStrand	69	chr17	70963741	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	2	-9.6549
chr7	5409477	5409577	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	chr10	74794357	74794447	protein_coding	Adora2a	intron	ENSMUSG00000020178	NonProperStrand	1	1	-inf
chr9	44389399	44389604	SINE	ID_B1	B4	chr9ID_B144389412	NonProperStrand	2	chr9	44389305	44389395	SINE	RSINE1	B4	chr9RSINE144389202	NonProperStrand	2	2	-inf
chr11	61427864	61427887	LINE	Lx7	L1	chr11Lx761427784	ProperStrand	8	chr17	39846559	39847155	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-6.6838
chr19	41915862	41916664	SINE	B2_Mm2	B2	chr19B2_Mm241916495	NonProperStrand	1	chrX	157459084	157459130	SINE	B3	B2	chrXB3157458978	ProperStrand	1	1	-inf
chr6	72743816	72743906	LTR	MTC	MaLR	chr6MTC72743804	ProperStrand	1	chr6	72743683	72743783	SINE	ID_B1	B4	chr6ID_B172743668	ProperStrand	1	1	-inf
chr1	16102777	16102796	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	chr12	109723861	109723946	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-7.2949
chr17	39846392	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	23110835	23110934	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	8	-3.4881
chr19	32726918	32726949	protein_coding	Papss2	intron	ENSMUSG00000024899	ProperStrand	5	chr5	108065759	108065800	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	1	-16.2448
chr1	130712103	130712203	LINE	Lx	L1	chr1Lx130711891	NonProperStrand	1	chr1	130711782	130711872	SINE	ID_B1	B4	chr1ID_B1130711788	NonProperStrand	1	1	-inf
chr19	24176866	24176900	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	127	chr2	5379265	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.1522
chr13	9834319	9834441	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr13	112841023	112841040	SINE	MIRc	MIR	chr13MIRc112841016	ProperStrand	1	1	-inf
chr17	39847440	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	32542701	32542718	protein_coding	Ets1	intron	ENSMUSG00000032035	ProperStrand	1	1	-inf
chrX	86192566	86192617	LINE	L1_Mus3	L1	chrXL1_Mus386191381	NonProperStrand	23	chr4	151254564	151254613	SINE	B3	B2	chr4B3151254528	ProperStrand	1	1	-inf
chr10	12540065	12540166	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	chr5	36614061	36614078	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-7.8377
chr9	123461931	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	64178513	64178529	protein_coding	Dis3l	intron	ENSMUSG00000032396	ProperStrand	29	2	-4.2823
chr13	89613692	89613782	LINE	L1ME1	L1	chr13L1ME189613612	ProperStrand	1	chr16	31686496	31686596	protein_coding	Dlg1	intron	ENSMUSG00000022770	ProperStrand	104	1	-inf
chr11	109011809	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	30499469	30499533	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	112	1	-4.8830
chr16	8859271	8859368	SINE	ID_B1	B4	chr16ID_B18859287	NonProperStrand	1	chr16	8857565	8857620	protein_coding	1810013L24Rik	utr3	ENSMUSG00000022507	ProperStrand	32	1	-inf
chr13	97486846	97486874	LTR	MTE2a	MaLR	chr13MTE2a97486779	NonProperStrand	1	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-inf
chr14	47301519	47301540	DNA	URR1A	MER1_type	chr14URR1A47301322	ProperStrand	4	chr17	66065911	66065985	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	80	1	-17.1917
chr17	39846718	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	17284182	17284280	protein_coding-noncoding	Pdia6	utr5	ENSMUSG00000020571	ProperStrand	2	1	-5.3533
chr6	3201516	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	136053173	136053190	protein_coding	Luzp1	intron	ENSMUSG00000001089	ProperStrand	2	1	-10.1342
chr6	19855695	19855785	DNA	URR1A	MER1_type	chr6URR1A19855667	NonProperStrand	1	chr6	19855365	19855465	LINE	Lx4B	L1	chr6Lx4B19853311	NonProperStrand	1	1	-inf
chr2	180910912	180911022	LINE	L1MEf	L1	chr2L1MEf180910927	ProperStrand	8	chr2	180910775	180910816	SINE	B4A	B4	chr2B4A180910614	NonProperStrand	1	1	-inf
chr17	28450581	28450658	protein_coding	Fance	utr5	ENSMUSG00000007570	NonProperStrand	14	chr2	179656041	179656059	protein_coding	Taf4a	intron	ENSMUSG00000039117	NonProperStrand	33	1	-16.2011
chr17	39847348	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	50504473	50504504	protein_coding	Dixdc1	intron	ENSMUSG00000032064	NonProperStrand	1	1	-inf
chr5	137297137	137297161	protein_coding	Emid2	intron	ENSMUSG00000004415	ProperStrand	82	chr18	23582021	23582114	protein_coding	Dtna	intron	ENSMUSG00000024302	ProperStrand	32	1	-12.6649
chr5	104510835	104510909	protein_coding	Sparcl1	intron	ENSMUSG00000029309	NonProperStrand	16	chr8	80866083	80866144	protein_coding	Ttc29	intron	ENSMUSG00000037101	ProperStrand	21	1	-16.8283
chr13	111750446	111750481	LINE	L1MD	L1	chr13L1MD111750264	NonProperStrand	1	chr17	35159291	35159379	protein_coding	D17H6S56E-3	intron	ENSMUSG00000007030	NonProperStrand	151	1	-inf
chr3	93467327	93467345	LTR	RLTR31_Mur	ERVK	chr3RLTR31_Mur93466951	NonProperStrand	1	chr17	34950949	34951019	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	1	-inf
chr6	120330983	120331087	protein_coding	Kdm5a	intron	ENSMUSG00000030180	NonProperStrand	22	chr17	44655877	44655895	protein_coding	Runx2	intron	ENSMUSG00000039153	ProperStrand	9	2	-inf
chr16	38582047	38585388	protein_coding	Tmem39a	intron	ENSMUSG00000002845	ProperStrand	41	chr11	120785856	120786327	protein_coding	Ccdc57	intron	ENSMUSG00000048445	NonProperStrand	71	3	-inf
chr9	44089050	44089135	protein_coding-noncoding	Abcg4	utr3	ENSMUSG00000032131	NonProperStrand	1	chr9	123462036	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847528	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	49856706	49856738	LTR	RNERVK23-int	ERVK	chr7RNERVK23-int49856279	ProperStrand	1	1	-inf
chr3	57810120	57810179	Simple_repeat	(TA)n	Simple_repeat	chr3(TA)n57810112	ProperStrand	1	chr3	57809626	57809681	Simple_repeat	(TC)n	Simple_repeat	chr3(TC)n57809618	ProperStrand	1	1	-inf
chr4	115785289	115791501	protein_coding-noncoding	Rad54l	utr3	ENSMUSG00000028702	NonProperStrand	3	chr4	115785091	115791595	protein_coding	Rad54l	intron	ENSMUSG00000028702	NonProperStrand	23	3	-inf
chr19	29583638	29583700	lincRNA	A930007I19Rik	intron	ENSMUSG00000086309	NonProperStrand	5	chr13	44869626	44869673	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr11	40714172	40714751	SINE	B1F	Alu	chr11B1F40714714	ProperStrand	2	chr9	123462101	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	84278396	84278478	LINE	Lx9	L1	chr13Lx984278328	NonProperStrand	1	chr4	98731322	98731382	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	1	-inf
chr5	115489513	115489603	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr6	65837321	65837421	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-6.7093
chr11	60806067	60806110	LTR	MTC	MaLR	chr11MTC60805789	NonProperStrand	1	chr11	60806538	60806592	LTR	ORR1E-int	MaLR	chr11ORR1E-int60806272	NonProperStrand	1	1	-inf
chr13	19387362	19387416	LINE	L1Md_T	L1	chr13L1Md_T19387205	NonProperStrand	1	chr17	39847681	39847757	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	27505402	27505492	LINE	L1Md_F2	L1	chr1L1Md_F227504727	NonProperStrand	1	chr1	27505133	27505233	LINE	L1Md_F2	L1	chr1L1Md_F227504727	ProperStrand	1	1	-inf
chr10	82017473	82017610	LTR	MERVK26-int	ERVK	chr10MERVK26-int82017302	NonProperStrand	1	chr3	27511048	27511065	protein_coding	Fndc3b	intron	ENSMUSG00000039286	ProperStrand	140	1	-inf
chr4	129075691	129076220	LTR	ORR1A2	MaLR	chr4ORR1A2129076056	ProperStrand	5	chr4	129075602	129075692	SINE	B1_Mur4	Alu	chr4B1_Mur4129075622	ProperStrand	1	1	-inf
chr11	101526096	101526187	SINE	B3A	B2	chr11B3A101526092	NonProperStrand	2	chr11	101525565	101525615	SINE	MIRb	MIR	chr11MIRb101525504	NonProperStrand	2	2	-inf
chr11	83189397	83189413	protein_coding	Ap2b1	intron	ENSMUSG00000035152	NonProperStrand	4	chr2	173094162	173094283	protein_coding	Pmepa1	intron	ENSMUSG00000038400	ProperStrand	4	2	-inf
chr1	56163337	56163356	LINE	Lx9	L1	chr1Lx956163100	ProperStrand	1	chr17	39847444	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847636	39847739	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	87742619	87742719	protein_coding	Isg20l2	utr3	ENSMUSG00000048039	ProperStrand	10	2	-3.6759
chr9	123461884	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	58822593	58822609	protein_coding	Ccdc148	intron	ENSMUSG00000036641	ProperStrand	8	1	-4.8360
chr8	80825202	80825230	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr11	30771966	30772078	protein_coding	Psme4	intron	ENSMUSG00000040850	ProperStrand	35	1	-8.3657
chr5	65035376	65035476	LINE	Lx8	L1	chr5Lx865034962	ProperStrand	1	chr5	65035477	65035567	LTR	RMER19B	ERVK	chr5RMER19B65035486	NonProperStrand	1	1	-inf
chr2	154552914	154553024	lincRNA	Gm14216	intron	ENSMUSG00000085691	ProperStrand	55	chr19	5800951	5800993	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-4.6057
chr14	19278153	19278206	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr13	44869576	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-9.8278
chr5	125049360	125050942	protein_coding-noncoding	Tctn2	utr5	ENSMUSG00000029386	NonProperStrand	5	chr5	125050967	125051044	protein_coding	Tctn2	intron	ENSMUSG00000029386	NonProperStrand	79	1	-16.6700
chr17	17018537	17018607	LTR	RLTR15	ERVK	chr17RLTR1517018522	ProperStrand	1	chr18	35846702	35846760	protein_coding	Dnajc18	intron	ENSMUSG00000024350	NonProperStrand	196	1	-inf
chr18	7717984	7718074	LTR	ETnERV2-int	ERVK	chr18ETnERV2-int7714330	NonProperStrand	1	chr18	6675401	6675501	LTR	ORR1A2	MaLR	chr18ORR1A26675389	NonProperStrand	1	1	-inf
chr1	120104618	120104696	LTR	RLTR45	ERVK	chr1RLTR45120104635	ProperStrand	1	chr1	34228185	34228253	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-inf
chr2	73564321	73564411	protein_coding	Chn1	intron	ENSMUSG00000056486	NonProperStrand	7	chr16	17016278	17016378	protein_coding	Mapk1	intron	ENSMUSG00000063358	NonProperStrand	5	1	-22.8469
chr17	39847550	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	146067743	146067836	protein_coding	Gm13051	intron	ENSMUSG00000066009	ProperStrand	9	2	-3.9821
chr17	39847784	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	125082432	125082492	Simple_repeat	(TTCTC)n	Simple_repeat	chr4(TTCTC)n125082397	NonProperStrand	1	1	-inf
chr1	45264478	45264568	LINE	Lx8	L1	chr1Lx845264206	ProperStrand	1	chr1	45264656	45264756	LTR	RMER6C	ERVK	chr1RMER6C45264553	NonProperStrand	1	1	-inf
chr10	42472953	42473005	antisense	Gm15199	.	ENSMUSG00000086428	ProperStrand	22	chr12	102692569	102692611	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-9.7882
chr6	60256796	60256813	LINE	L1_Mus4	L1	chr6L1_Mus460256675	NonProperStrand	3	chr6	148294666	148305998	protein_coding	Tmtc1	intron	ENSMUSG00000030306	NonProperStrand	51	1	-18.9239
chr13	111797982	111798098	LINE	L1_Mus1	L1	chr13L1_Mus1111794864	NonProperStrand	42	chr10	77625686	77625711	protein_coding	D10Jhu81e	intron	ENSMUSG00000053329	NonProperStrand	9	1	-16.6695
chr7	109521250	109521331	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr7	133103609	133103680	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.1382
chr9	62100916	62101006	LINE	L1MEc	L1	chr9L1MEc62100937	NonProperStrand	1	chr9	62100812	62100912	SINE	B4A	B4	chr9B4A62100661	NonProperStrand	1	1	-inf
chr10	19938896	19938924	protein_coding	Mtap7	intron	ENSMUSG00000019996	ProperStrand	21	chr14	57917227	57917344	protein_coding	Cryl1	intron	ENSMUSG00000021947	ProperStrand	31	1	-15.4925
chr10	83398214	83398304	SINE	B1_Mur4	Alu	chr10B1_Mur483398174	ProperStrand	3	chr10	83398292	83398392	Simple_repeat	(CAAAC)n	Simple_repeat	chr10(CAAAC)n83398320	ProperStrand	3	3	-inf
chr13	67755774	67755790	LTR	BGLII_B	ERVK	chr13BGLII_B67755635	NonProperStrand	1	chr9	123461931	123461954	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	100581797	100581890	protein_coding	Rab5c	intron	ENSMUSG00000019173	ProperStrand	39	chr9	104220564	104220632	protein_coding	Acpp	intron	ENSMUSG00000032561	ProperStrand	41	1	-13.6628
chr2	69651611	69651701	LTR	ORR1C2-int	MaLR	chr2ORR1C2-int69651133	NonProperStrand	5	chr2	69651740	69651841	LTR	ORR1C2	MaLR	chr2ORR1C269651681	NonProperStrand	5	5	-inf
chr2	172136512	172136602	SINE	B3	B2	chr2B3172136455	ProperStrand	1	chr2	172136738	172136838	SINE	B4A	B4	chr2B4A172136719	ProperStrand	1	1	-inf
chr17	39846941	39847012	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	36002308	36002373	antisense	5530401N12Rik	.	ENSMUSG00000087443	NonProperStrand	2	1	-5.3533
chr5	73063198	73063300	SINE	B4A	B4	chr5B4A73063104	NonProperStrand	1	chr5	73063407	73063450	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n73063329	NonProperStrand	1	1	-inf
chr8	120753707	120754461	LTR	MTE2a	MaLR	chr8MTE2a120754061	ProperStrand	3	chr8	120753499	120753589	LTR	ORR1C1	MaLR	chr8ORR1C1120753444	NonProperStrand	9	3	-inf
chr17	39847623	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	80417214	80417317	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	11	3	-5.3922
chr6	4537181	4537375	Simple_repeat	(TTA)n	Simple_repeat	chr6(TTA)n4537130	ProperStrand	1	chr13	44869942	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr8	107642688	107642788	LTR	RLTR31B_Mm	ERVK	chr8RLTR31B_Mm107642629	NonProperStrand	1	chr8	107642324	107642414	SINE	B1_Mus2	Alu	chr8B1_Mus2107642327	NonProperStrand	1	1	-inf
chr7	80349641	80349717	LINE	Lx6	L1	chr7Lx680349333	NonProperStrand	1	chr2	24898408	24898490	protein_coding	Pnpla7	intron	ENSMUSG00000036833	NonProperStrand	78	1	-inf
chr17	39846071	39846173	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr14	99057810	99057852	SINE	B1_Mus2	Alu	chr14B1_Mus299057776	NonProperStrand	5	1	-6.7797
chr9	65346957	65354648	SINE	B1_Mur4	Alu	chr9B1_Mur465346920	ProperStrand	2	chr9	65354716	65356312	protein_coding	Ankdd1a	intron	ENSMUSG00000066510	NonProperStrand	5	2	-inf
chr18	33832609	33832653	LTR	RMER5	ERV1	chr18RMER533832368	NonProperStrand	4	chr8	119541693	119542127	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	121	3	-inf
chrX	101464466	101464556	LINE	L1Md_A	L1	chrXL1Md_A101461922	ProperStrand	1	chr5	149083451	149083551	protein_coding	Mtus2	intron	ENSMUSG00000029651	ProperStrand	20	1	-inf
chr17	39847207	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	124856265	124856349	RC	Helitron2Na_Mam	Helitron?	chr4Helitron2Na_Mam124856080	ProperStrand	1	1	-inf
chr15	4326794	4326894	protein_coding	Plcxd3	intron	ENSMUSG00000049148	NonProperStrand	6	chr15	4334014	4334104	protein_coding	Plcxd3	intron	ENSMUSG00000049148	ProperStrand	4	1	-inf
chr5	72618173	72618189	lincRNA	Atp10d	intron	ENSMUSG00000046808	NonProperStrand	11	chr8	11530711	11530800	protein_coding	Cars2	intron	ENSMUSG00000056228	ProperStrand	40	1	-16.3268
chr17	39847207	39847275	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	51466184	51466309	LTR	RLTR33	ERVK	chr6RLTR3351465765	NonProperStrand	8	1	-3.3803
chr6	5104046	5104138	protein_coding-noncoding	Ppp1r9a	utr3	ENSMUSG00000032827	ProperStrand	1	chr6	5104192	5104226	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-inf
chr8	73032242	73032342	protein_coding	2810422J05Rik	exon	ENSMUSG00000055553	ProperStrand	23	chr8	73032447	73032537	protein_coding	Uba52	intron	ENSMUSG00000090137	ProperStrand	20	1	-16.2021
chr5	134238828	134239521	LTR	MLT2B3	ERVL	chr5MLT2B3134238803	ProperStrand	3	chr4	132530813	132533334	protein_coding	Fgr	utr5	ENSMUSG00000028874	NonProperStrand	17	1	-19.8425
chr17	39846243	39846760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	93121848	93121871	protein_coding	Car10	intron	ENSMUSG00000056158	NonProperStrand	10	3	-5.6971
chr14	94909007	94909097	LTR	RLTR17	ERVK	chr14RLTR1794908516	ProperStrand	1	chr14	100017281	100017381	SINE	B1_Mur2	Alu	chr14B1_Mur2100017284	ProperStrand	1	1	-inf
chr10	67104543	67104628	LTR	ORR1A0	MaLR	chr10ORR1A067104370	ProperStrand	10	chr10	67105244	67105316	SINE	B4	B4	chr10B467105189	ProperStrand	1	1	-inf
chr17	39847615	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	119397109	119397179	protein_coding-noncoding	Uggt2	utr3	ENSMUSG00000042104	NonProperStrand	1	1	-inf
chr16	91623843	91630084	protein_coding	Gart	intron	ENSMUSG00000022962	ProperStrand	101	chr9	118674951	118675011	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-8.1708
chr1	187974561	187974661	LINE	Lx7	L1	chr1Lx7187974571	NonProperStrand	1	chr1	187974378	187974468	SINE	ID_B1	B4	chr1ID_B1187974339	ProperStrand	1	1	-inf
chr12	57269594	57269694	LINE	Lx9	L1	chr12Lx957269480	NonProperStrand	1	chr12	57269888	57269978	LINE	Lx9	L1	chr12Lx957269480	ProperStrand	1	1	-inf
chr1	63483287	63483323	LINE	L1MA9	L1	chr1L1MA963483132	ProperStrand	1	chr17	74617055	74617131	protein_coding	Memo1	intron	ENSMUSG00000058704	NonProperStrand	64	1	-inf
chr12	86470482	86488564	protein_coding	Dlst	intron	ENSMUSG00000004789	ProperStrand	48	chr12	86476783	86505855	protein_coding	Rps6kl1	intron	ENSMUSG00000019235	NonProperStrand	221	7	-inf
chr9	123462128	123462184	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr16	56035277	56037502	protein_coding	Rg9mtd1	exon	ENSMUSG00000044763	NonProperStrand	4	1	-6.3300
chr5	121572696	121572764	Other	RMER1C	Other	chr5RMER1C121572305	NonProperStrand	8	chr10	79074489	79074562	protein_coding	C2cd4c	utr3	ENSMUSG00000045912	ProperStrand	2	1	-inf
chr18	37782058	37782150	SINE	B1_Mur1	Alu	chr18B1_Mur137782028	ProperStrand	1	chr18	37782189	37782289	SINE	ID4	ID	chr18ID437782193	ProperStrand	1	1	-inf
chr1	16102140	16102250	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	chr3	67316827	67316874	protein_coding	Rarres1	intron	ENSMUSG00000049404	NonProperStrand	6	1	-16.3454
chr15	77302204	77302267	LTR	RLTR33	ERVK	chr15RLTR3377301905	ProperStrand	2	chr15	77303220	77303275	LTR	RMER10A	ERVL	chr15RMER10A77302982	ProperStrand	1	1	-inf
chr17	39847953	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	89723558	89723648	LTR	MT2_Mm	ERVL	chr3MT2_Mm89723528	NonProperStrand	4	1	-3.7035
chr1	153763925	153764014	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	NonProperStrand	52	chr13	36168183	36168284	protein_coding	Lyrm4	intron	ENSMUSG00000046573	NonProperStrand	50	4	-inf
chr5	108122249	108122267	SINE	B1_Mm	Alu	chr5B1_Mm108122217	NonProperStrand	1	chr2	31041215	31041303	protein_coding	Gpr107	intron	ENSMUSG00000000194	NonProperStrand	164	1	-inf
chr12	86498979	86499066	DNA	Tigger7	MER2_type	chr12Tigger786498918	NonProperStrand	2	chr17	39848555	39848597	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-8.7208
chr7	81175227	81175342	LTR	MTEa	MaLR	chr7MTEa81175041	NonProperStrand	1	chr9	123461802	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	72281975	72282076	LINE	L1MCa	L1	chr9L1MCa72281902	NonProperStrand	2	chr9	72282180	72282270	LTR	ORR1D1	MaLR	chr9ORR1D172282120	NonProperStrand	2	2	-inf
chr2	137069422	137069458	LINE	L2a	L2	chr2L2a137069387	ProperStrand	1	chr17	39846406	39846452	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	24993658	24993750	protein_coding	Hagh	intron	ENSMUSG00000024158	NonProperStrand	8	chr13	97190560	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.2032
chr2	32375883	32375990	LINE	L1M3	L1	chr2L1M332375632	ProperStrand	1	chr2	32376023	32376046	SINE	B3A	B2	chr2B3A32376021	ProperStrand	3	1	-inf
chr4	132352769	132352808	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr18	84305715	84305743	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-7.2727
chr6	147790951	147791051	LINE	L1_Mur2	L1	chr6L1_Mur2147790750	NonProperStrand	1	chr6	147790633	147790723	LTR	RMER6A	ERVK	chr6RMER6A147790584	ProperStrand	1	1	-inf
chr8	70896265	70897392	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.1426
chrX	95025862	95025878	LINE	L1M2	L1	chrXL1M295025539	NonProperStrand	10	chr6	3201509	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-6.3611
chr6	33632428	33632548	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr11	75040115	75040132	protein_coding	Rtn4rl1	intron	ENSMUSG00000045287	NonProperStrand	6	1	-11.5555
chr18	24002283	24002302	protein_coding	Mapre2	intron	ENSMUSG00000024277	NonProperStrand	17	chr9	78480574	78480663	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-10.0571
chr17	39848200	39848254	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	135281281	135285527	protein_coding	Nfkb1	intron	ENSMUSG00000028163	NonProperStrand	20	1	-3.3703
chr19	9880827	9880907	LINE	L1VL2	L1	chr19L1VL29880197	NonProperStrand	4	chr17	39847736	39847806	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr18	80197880	80200409	DNA	URR1B	MER1_type	chr18URR1B80200283	NonProperStrand	1	chrX	102069144	102069269	LINE	L1Md_T	L1	chrXL1Md_T102067032	ProperStrand	1	1	-inf
chr1	56971241	56971260	protein_coding	Satb2	intron	ENSMUSG00000038331	NonProperStrand	7	chr11	97684630	97684687	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	1	-14.9602
chr11	48803454	48803894	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr13	23575760	23575799	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	2	-16.0898
chr6	40477113	40477146	LINE	L1Md_F2	L1	chr6L1Md_F240477042	NonProperStrand	1	chr7	118855631	118855654	protein_coding	Galntl4	intron	ENSMUSG00000038296	ProperStrand	65	1	-inf
chr7	34203087	34203185	LINE	L1Md_F2	L1	chr7L1Md_F234202552	ProperStrand	46	chr7	34202329	34202365	LTR	MMETn-int	ERVK	chr7MMETn-int34202121	ProperStrand	20	1	-14.7968
chr12	111299111	111299139	LTR	MTD	MaLR	chr12MTD111299104	ProperStrand	1	chr17	39846587	39846605	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	86470173	86470222	protein_coding	Dlst	intron	ENSMUSG00000004789	ProperStrand	48	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.9221
chr5	146835069	146835102	LINE	L1_Mur2	L1	chr5L1_Mur2146834958	ProperStrand	33	chr1	181945338	181945361	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	2	-14.6512
chr4	46468743	46469902	protein_coding	Anp32b	intron	ENSMUSG00000028333	ProperStrand	54	chr5	93133971	93134052	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	2	-16.0438
chr14	49195872	49195888	LTR	RLTR31A_Mm	ERVK	chr14RLTR31A_Mm49195523	NonProperStrand	1	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	1	-inf
chr1	100180181	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr2	166103947	166103990	lincRNA	Gm11468	intron	ENSMUSG00000084840	NonProperStrand	60	1	-10.6640
chr1	179344983	179345059	LINE	L1MB3	L1	chr1L1MB3179344922	NonProperStrand	3	chr1	179343408	179343473	LINE	Lx8	L1	chr1Lx8179342822	ProperStrand	8	3	-inf
chr17	39848503	39848537	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr13	77383352	77383470	protein_coding	2210408I21Rik	intron	ENSMUSG00000071252	ProperStrand	25	1	-3.2113
chr17	39847845	39847879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	155123261	155123353	protein_coding	Pigu	intron	ENSMUSG00000038383	NonProperStrand	4	1	-3.7035
chr5	90243994	90244084	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	chr18	76046582	76046682	protein_coding	Zbtb7c	intron	ENSMUSG00000044646	ProperStrand	68	4	-inf
chr1	165938746	165938788	LINE	Lx7	L1	chr1Lx7165938582	ProperStrand	1	chr17	39847440	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	109011788	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	92085880	92085931	protein_coding	Slc5a3	utr3	ENSMUSG00000089774	ProperStrand	25	1	-7.8478
chr8	114752449	114752538	SINE	B3A	B2	chr8B3A114752433	ProperStrand	2	chr18	12990627	12990668	protein_coding	Osbpl1a	intron	ENSMUSG00000044252	NonProperStrand	72	1	-19.3454
chr19	34868484	34868548	DNA	MER5B	MER1_type	chr19MER5B34868486	ProperStrand	1	chr9	57738857	57738922	LINE	Lx7	L1	chr9Lx757738757	ProperStrand	1	1	-inf
chr6	25064958	25065048	LINE	L1_Mm	L1	chr6L1_Mm25064920	ProperStrand	1	chr6	25064796	25064896	SINE	ID4	ID	chr6ID425064809	NonProperStrand	1	1	-inf
chr9	57730038	57730138	LTR	MT2A	ERVL	chr9MT2A57729990	ProperStrand	3	chr9	57729918	57730008	SINE	B1_Mus1	Alu	chr9B1_Mus157729844	NonProperStrand	3	3	-inf
chr10	93836635	93836677	protein_coding	Tmcc3	intron	ENSMUSG00000020023	ProperStrand	52	chr4	98451365	98451463	protein_coding	Kank4	intron	ENSMUSG00000035407	NonProperStrand	19	1	-14.6408
chr8	84965333	84965404	LINE	L1ME2	L1	chr8L1ME284965323	ProperStrand	2	chr16	13780810	13782046	protein_coding	Rrn3	intron	ENSMUSG00000022682	ProperStrand	46	2	-inf
chr9	123461983	123462016	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	14544706	14544727	protein_coding	Piwil4	intron	ENSMUSG00000036912	ProperStrand	3	1	-7.0114
chr9	96720613	96720634	SINE	B2_Mm2	B2	chr9B2_Mm296720573	NonProperStrand	1	chr9	96725065	96725186	protein_coding	Acpl2	utr3	ENSMUSG00000043587	NonProperStrand	4	1	-inf
chr6	13177383	13177483	LINE	Lx6	L1	chr6Lx613177125	NonProperStrand	1	chr6	13177944	13178034	LTR	MTA_Mm	MaLR	chr6MTA_Mm13177943	NonProperStrand	1	1	-inf
chr8	43173913	43174013	LINE	Lx	L1	chr8Lx43173176	ProperStrand	5	chr8	43174008	43174098	LTR	ORR1A0	MaLR	chr8ORR1A043173999	NonProperStrand	2	2	-inf
chr6	60475420	60475510	LINE	L1Md_A	L1	chr6L1Md_A60473499	NonProperStrand	1	chr6	60475579	60475679	LINE	L1Md_F2	L1	chr6L1Md_F260475586	ProperStrand	4	1	-inf
chr12	72783842	72783871	LINE	L1_Rod	L1	chr12L1_Rod72783692	ProperStrand	2	chr17	39846580	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr19	53367485	53367575	LINE	L1MDa	L1	chr19L1MDa53367211	NonProperStrand	4	chr11	101016481	101016581	SINE	RSINE1	B4	chr11RSINE1101016470	NonProperStrand	3	3	-inf
chr11	77607619	77607719	protein_coding	Myo18a	intron	ENSMUSG00000000631	NonProperStrand	31	chr1	43564692	43564741	protein_coding	Nck2	intron	ENSMUSG00000066877	ProperStrand	93	1	-12.4765
chr15	36608446	36608506	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	83	chr4	151793607	151793677	processed_transcript	Gm16334	.	ENSMUSG00000089757	ProperStrand	10	2	-22.8017
chr11	97836635	97836688	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	chr13	97190545	97190608	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.6261
chr9	58638880	58638980	DNA	Zaphod	Tip100	chr9Zaphod58638885	ProperStrand	1	chr9	58638722	58638812	SINE	B4A	B4	chr9B4A58638617	NonProperStrand	1	1	-inf
chr3	144561264	144561354	LINE	Lx3A	L1	chr3Lx3A144561233	ProperStrand	14	chr3	144561142	144561242	Low_complexity	T-rich	Low_complexity	chr3T-rich144561146	NonProperStrand	2	2	-inf
chr4	94512402	94512475	protein_coding	Tek	intron	ENSMUSG00000006386	NonProperStrand	54	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.8392
chr1	136624855	136624918	protein_coding	Syt2	intron	ENSMUSG00000026452	ProperStrand	51	chr9	15313860	15313933	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-10.7819
chr17	39846427	39846463	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	45509478	45511159	SINE	MIRc	MIR	chr5MIRc45511033	NonProperStrand	1	1	-inf
chr2	38898831	38898868	protein_coding	Golga1	intron	ENSMUSG00000026754	ProperStrand	15	chr7	103550503	103550570	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-14.8500
chr2	101900969	101901067	antisense	Gm13919	.	ENSMUSG00000085417	ProperStrand	7	chr1	131573813	131573870	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-13.3921
chr6	3201466	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	27456770	27456880	protein_coding	4930570N19Rik	intron	ENSMUSG00000090861	NonProperStrand	3	1	-9.0398
chr4	101573514	101573604	LTR	MYSERV16_I-int	ERVK	chr4MYSERV16_I-int101573475	ProperStrand	1	chr4	101573303	101573403	LTR	ORR1A1	MaLR	chr4ORR1A1101573130	NonProperStrand	2	1	-inf
chr8	72319106	72319431	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	chr8	124842047	124842106	protein_coding	Zfpm1	intron	ENSMUSG00000049577	NonProperStrand	51	1	-12.4542
chr17	25875552	25875570	protein_coding	Mslnl	intron	ENSMUSG00000041062	NonProperStrand	21	chr11	88479546	88479605	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-8.3671
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	143926099	143926206	Other	RMER1B	Other	chr2RMER1B143925985	ProperStrand	1	1	-inf
chr17	39846173	39846192	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chrX	36241321	36241400	protein_coding	6030498E09Rik	intron	ENSMUSG00000051361	ProperStrand	6	1	-6.3814
chr5	30672495	30672561	protein_coding	Otof	exon	ENSMUSG00000062372	NonProperStrand	98	chr16	23110450	23110515	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	10	1	-14.7051
chr2	90395142	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr1	16102728	16102824	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	1	-9.2208
chr17	39846473	39846551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	33746337	33759143	protein_coding	4933407H18Rik	intron	ENSMUSG00000037355	NonProperStrand	11	2	-3.3422
chr2	52537899	52537989	LINE	L1Md_F2	L1	chr2L1Md_F252537903	NonProperStrand	1	chr2	52537728	52537828	LINE	Lx8	L1	chr2Lx852537432	ProperStrand	1	1	-inf
chr5	33508759	33508800	SINE	B3	B2	chr5B333508603	NonProperStrand	26	chr5	33509397	33509477	SINE	RSINE1	B4	chr5RSINE133509339	NonProperStrand	2	2	-inf
chr5	146261005	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	56223572	56223962	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	3	-5.2440
chr9	61913504	61913950	protein_coding	Glce	intron	ENSMUSG00000032252	ProperStrand	176	chr13	97190583	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-5.3346
chr17	39847880	39847898	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	152054297	152054383	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n152054181	ProperStrand	1	1	-inf
chr6	121346212	121346312	protein_coding	Iqsec3	intron	ENSMUSG00000040797	NonProperStrand	5	chr2	161838098	161838188	protein_coding	Ptprt	intron	ENSMUSG00000053141	ProperStrand	25	1	-19.3499
chr1	138606266	138606336	lincRNA	Gm16880	intron	ENSMUSG00000085011	NonProperStrand	16	chr9	109008411	109008433	protein_coding	Plxnb1	intron	ENSMUSG00000053646	ProperStrand	2	1	-inf
chr4	150897464	150901089	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr5	92054850	92054912	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-6.7856
chr2	62371372	62371425	protein_coding	Fap	intron	ENSMUSG00000000392	ProperStrand	4	chr9	123461890	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr6	49199687	49199744	protein_coding	Tra2a	intron	ENSMUSG00000029817	ProperStrand	51	chr16	24908442	24908509	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	1	-9.4500
chr8	118199014	118199104	SINE	B4	B4	chr8B4118198999	ProperStrand	1	chr8	118199255	118199355	SINE	RSINE1	B4	chr8RSINE1118199215	ProperStrand	1	1	-inf
chr11	76823237	76823301	antisense	Gm12343	.	ENSMUSG00000087398	ProperStrand	2	chr11	76826663	76826712	protein_coding	Slc6a4	intron	ENSMUSG00000020838	NonProperStrand	8	1	-23.4058
chr2	25603131	25603231	LTR	MMERVK10C-int	ERVK	chr2MMERVK10C-int25602894	ProperStrand	5	chr2	25603229	25603319	LTR	RLTR10C	ERVK	chr2RLTR10C25603211	ProperStrand	5	5	-inf
chr4	136050317	136051188	protein_coding	Luzp1	intron	ENSMUSG00000001089	NonProperStrand	42	chr1	34138198	34138273	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-7.4978
chr17	39846452	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	67271048	67271095	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n67270976	NonProperStrand	1	1	-inf
chr15	86417828	86417918	LINE	L1M5	L1	chr15L1M586417783	NonProperStrand	2	chr15	86417978	86418078	SINE	B4	B4	chr15B486417953	ProperStrand	2	2	-inf
chr17	39845976	39846040	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	30023782	30023802	protein_coding	Yif1b	intron	ENSMUSG00000030588	ProperStrand	27	1	-3.3782
chr2	90732877	90733166	SINE	B1_Mus2	Alu	chr2B1_Mus290733065	ProperStrand	2	chr2	90733207	90735511	protein_coding	Ndufs3	intron	ENSMUSG00000005510	NonProperStrand	8	1	-23.4058
chr6	49236470	49236608	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr13	54190145	54190166	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-9.6958
chr17	7182228	7182258	DNA	RMER30	MER1_type	chr17RMER307182231	ProperStrand	3	chr9	123461865	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr15	5808667	5808767	LINE	L1_Mur2	L1	chr15L1_Mur25808481	ProperStrand	1	chr15	5808861	5808951	LINE	L1_Mur3	L1	chr15L1_Mur35808805	NonProperStrand	1	1	-inf
chr5	40796029	40796129	LINE	L1_Mus3	L1	chr5L1_Mus340796015	NonProperStrand	1	chr7	139245533	139245623	protein_coding	Cpxm2	intron	ENSMUSG00000030862	ProperStrand	13	1	-inf
chr10	119213852	119213903	protein_coding	Grip1	intron	ENSMUSG00000034813	NonProperStrand	73	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-11.5624
chr9	53476980	53477008	protein_coding	Cul5	intron	ENSMUSG00000032030	ProperStrand	18	chr7	133033647	133033733	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-7.5786
chr10	63037326	63037426	protein_coding-noncoding	Ctnna3	utr5	ENSMUSG00000060843	ProperStrand	1	chr10	63036823	63036913	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-inf
chr15	68127910	68127973	LINE	L1ME3B	L1	chr15L1ME3B68127836	ProperStrand	4	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.0813
chr14	80530257	80530357	LINE	L1_Mus3	L1	chr14L1_Mus380530227	NonProperStrand	1	chr14	80529939	80530029	LTR	MLT1F2	MaLR	chr14MLT1F280529900	NonProperStrand	1	1	-inf
chr7	110417146	110417244	LTR	RMER12	ERVK	chr7RMER12110417120	ProperStrand	2	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr17	39847762	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	29006617	29006636	SINE	B1_Mus2	Alu	chr13B1_Mus229006536	NonProperStrand	1	1	-inf
chr17	23586014	23586117	LINE	L1Md_T	L1	chr17L1Md_T23585318	NonProperStrand	2	chrX	94190140	94190183	LINE	L1VL2	L1	chrXL1VL294189392	ProperStrand	7	1	-21.1088
chrX	96446741	96446760	SINE	MIRb	MIR	chrXMIRb96446604	NonProperStrand	1	chr2	156706096	156706131	protein_coding	Sla2	intron	ENSMUSG00000027636	NonProperStrand	3	1	-inf
chr6	48063892	48063984	LTR	MTC	MaLR	chr6MTC48063702	NonProperStrand	5	chr6	48064077	48064177	SINE	B2_Mm2	B2	chr6B2_Mm248064066	ProperStrand	5	5	-inf
chr17	39847207	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	6917039	6917078	LTR	MTC-int	MaLR	chr19MTC-int6916702	ProperStrand	1	1	-inf
chr17	39847440	39847544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	22171273	22227533	lincRNA	6030443J06Rik	intron	ENSMUSG00000087558	ProperStrand	4	1	-3.7035
chr8	12730637	12730727	LTR	ORR1D1-int	MaLR	chr8ORR1D1-int12730498	ProperStrand	1	chr8	12730371	12730471	LTR	ORR1D1	MaLR	chr8ORR1D112730115	ProperStrand	1	1	-inf
chr13	106802960	106803042	LINE	Lx6	L1	chr13Lx6106802571	ProperStrand	2	chr5	30712134	30712192	protein_coding	Otof	intron	ENSMUSG00000062372	NonProperStrand	98	2	-inf
chr2	144761344	144763524	LINE	Lx8	L1	chr2Lx8144763468	NonProperStrand	1	chr2	144761191	144761281	Other	RMER1C	Other	chr2RMER1C144761027	NonProperStrand	1	1	-inf
chr6	49244414	49244514	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int49243760	ProperStrand	4	chr6	49244564	49244654	SINE	B1_Mus2	Alu	chr6B1_Mus249244575	NonProperStrand	4	1	-inf
chr8	84662772	84662844	LINE	Lx4A	L1	chr8Lx4A84662532	NonProperStrand	6	chr9	78479133	78479190	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-12.2577
chr18	86219348	86219448	LINE	L1Md_T	L1	chr18L1Md_T86213511	NonProperStrand	2	chr18	86219684	86219774	LINE	L1Md_T	L1	chr18L1Md_T86219606	NonProperStrand	2	1	-19.8939
chr17	39848513	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr12	24894315	24894362	SINE	B1_Mm	Alu	chr12B1_Mm24894268	NonProperStrand	1	1	-inf
chr4	135213135	135213225	LINE	L2a	L2	chr4L2a135213029	ProperStrand	1	chr4	140591922	140592022	protein_coding	Crocc	intron	ENSMUSG00000040860	ProperStrand	30	1	-inf
chr1	156046171	156046261	LTR	RMER17A2	ERVK	chr1RMER17A2156045450	ProperStrand	3	chr1	156046276	156046376	SINE	B3	B2	chr1B3156046269	ProperStrand	1	1	-inf
chr6	39324600	39324640	protein_coding	Slc37a3	intron	ENSMUSG00000029924	ProperStrand	41	chr1	127924375	127924461	protein_coding	Nckap5	exon	ENSMUSG00000049690	NonProperStrand	170	1	-10.7005
chr6	67271893	67271973	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr6	33360013	33360083	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-4.4206
chr7	6577600	6577708	LINE	L1Md_F	L1	chr7L1Md_F6577406	NonProperStrand	1	chr7	6577766	6577819	LINE	L1Md_F	L1	chr7L1Md_F6577595	NonProperStrand	2	1	-inf
chr5	88671294	88672626	LINE	L1Md_A	L1	chr5L1Md_A88667948	NonProperStrand	3	chr5	88659913	88659982	LINE	L1Md_F2	L1	chr5L1Md_F288658369	ProperStrand	4	1	-inf
chrX	20672464	20672823	LTR	ORR1A1	MaLR	chrXORR1A120672469	NonProperStrand	2	chr9	65694537	65694553	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	1	-18.6719
chr9	100932709	100932767	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	chr15	82856362	82856430	protein_coding	Nfam1	intron	ENSMUSG00000058099	ProperStrand	119	1	-10.8224
chr5	121571293	121571378	LINE	L2b	L2	chr5L2b121571255	ProperStrand	1	chr17	39847442	39847504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	97569085	97569124	protein_coding	Pde4dip	intron	ENSMUSG00000038170	ProperStrand	50	chr2	5379277	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.8993
chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	86830009	86830043	SINE	MIR	MIR	chr10MIR86829985	NonProperStrand	1	1	-inf
chr14	40964043	40964114	LINE	L1M4	L1	chr14L1M440963385	NonProperStrand	6	chr14	40949821	40949902	LTR	MTEa-int	MaLR	chr14MTEa-int40949781	NonProperStrand	6	6	-inf
chr11	58053634	58053668	LINE	L1_Mus2	L1	chr11L1_Mus258053307	NonProperStrand	1	chr2	165032495	165032581	protein_coding	Cdh22	intron	ENSMUSG00000053166	ProperStrand	53	1	-inf
chrX	103499349	103499452	LINE	L1Md_F3	L1	chrXL1Md_F3103498536	ProperStrand	1	chr10	40302007	40302064	protein_coding	Slc22a16	intron	ENSMUSG00000019834	NonProperStrand	68	1	-inf
chr13	26983924	26984014	LINE	Lx5	L1	chr13Lx526983346	NonProperStrand	1	chr13	26984274	26984374	LTR	ORR1A4	MaLR	chr13ORR1A426984087	ProperStrand	1	1	-inf
chr7	81330914	81330941	LTR	RodERV21-int	ERV1	chr7RodERV21-int81328778	NonProperStrand	1	chr16	14474069	14474147	protein_coding	Abcc1	utr3	ENSMUSG00000023088	ProperStrand	122	1	-inf
chr5	146261170	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr13	89901407	89901455	lincRNA	Gm4117	intron	ENSMUSG00000089940	NonProperStrand	11	1	-8.4703
chr9	59438197	59438260	protein_coding	Celf6	intron	ENSMUSG00000032297	NonProperStrand	8	chr18	67788739	67788805	protein_coding	Cep76	intron	ENSMUSG00000073542	NonProperStrand	16	1	-18.8384
chr17	35236832	35237119	protein_coding	Abhd16a	intron	ENSMUSG00000007036	ProperStrand	2	chr11	101444645	101444769	protein_coding	Tmem106a	intron	ENSMUSG00000034947	ProperStrand	25	1	-inf
chr9	123462080	123462138	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	75070962	75071048	protein_coding	Myo5a	utr3	ENSMUSG00000034593	NonProperStrand	2	1	-8.0983
chr3	95481322	95481412	protein_coding	Adamtsl4	intron	ENSMUSG00000015850	NonProperStrand	7	chr9	55175612	55175638	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	1	-15.9907
chr14	63650642	63650742	LTR	MYSERV16_I-int	ERVK	chr14MYSERV16_I-int63650502	NonProperStrand	1	chr14	63650421	63650511	SINE	B1_Mm	Alu	chr14B1_Mm63650361	NonProperStrand	1	1	-inf
chr11	84829276	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr9	123461854	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-4.4868
chr2	80632634	80632704	LTR	MLT1H	MaLR	chr2MLT1H80632617	NonProperStrand	3	chr7	63895226	63895286	LTR	RMER2	ERV1	chr7RMER263895066	NonProperStrand	1	1	-inf
chr9	123461822	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	28898717	28903288	protein_coding	Fcgbp	intron	ENSMUSG00000047730	NonProperStrand	69	3	-3.4215
chr15	88393391	88393491	LINE	L1MEf	L1	chr15L1MEf88393301	NonProperStrand	1	chr15	88393592	88393682	LINE	L1MEf	L1	chr15L1MEf88393540	NonProperStrand	1	1	-inf
chr13	48565350	48565450	LTR	ORR1B2-int	MaLR	chr13ORR1B2-int48565270	ProperStrand	1	chr13	48565170	48565260	SINE	B1_Mus2	Alu	chr13B1_Mus248565129	ProperStrand	1	1	-inf
chr17	39843488	39843553	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chrX	68712388	68713263	antisense	Gm16189	.	ENSMUSG00000085284	ProperStrand	10	1	-5.9887
chr17	39845567	39845604	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr11	87077400	87077496	protein_coding	Ppm1e	intron	ENSMUSG00000046442	ProperStrand	15	1	-4.7983
chr9	49010056	49010156	DNA	MER5A1	MER1_type	chr9MER5A149010061	NonProperStrand	2	chr9	49009930	49010020	LINE	L1MC4a	L1	chr9L1MC4a49009859	NonProperStrand	2	2	-inf
chr2	5157412	5157540	LTR	ORR1E	MaLR	chr2ORR1E5157201	NonProperStrand	4	chr2	5158962	5158984	LTR	ORR1E	MaLR	chr2ORR1E5158789	ProperStrand	3	3	-inf
chr16	96206662	96214023	protein_coding	Brwd1	utr3	ENSMUSG00000022914	NonProperStrand	3	chr8	107374299	107374388	protein_coding	Ces2c	intron	ENSMUSG00000061825	ProperStrand	15	1	-21.4444
chr11	105378039	105378069	LINE	L1MC4	L1	chr11L1MC4105377984	ProperStrand	1	chr6	125130448	125130488	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	78	1	-inf
chr10	105238440	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	chr9	118674951	118675012	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.6300
chr7	62788965	62789055	DNA	URR1B	MER1_type	chr7URR1B62788944	ProperStrand	1	chr7	62788808	62788908	LINE	L1_Mus1	L1	chr7L1_Mus162788108	NonProperStrand	1	1	-inf
chr4	137790228	137790312	protein_coding-noncoding	Hp1bp3	utr5	ENSMUSG00000028759	NonProperStrand	9	chr4	137784777	137784839	protein_coding	Hp1bp3	intron	ENSMUSG00000028759	NonProperStrand	73	1	-15.5303
chr9	123461957	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	60507374	60522377	protein_coding	Abi2	intron	ENSMUSG00000026782	NonProperStrand	40	2	-3.4283
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr17	26579862	26579913	protein_coding	Neurl1b	utr3	ENSMUSG00000034413	ProperStrand	95	1	-8.8866
chr13	29971987	29972077	SINE	B1_Mur3	Alu	chr13B1_Mur329972008	ProperStrand	5	chr13	29971853	29971953	SINE	ID_B1	B4	chr13ID_B129971762	NonProperStrand	6	3	-inf
chr11	99017069	99017134	LTR	RLTR25B	ERVK	chr11RLTR25B99017055	ProperStrand	1	chr9	40229937	40229993	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-inf
chr16	7865938	7866009	LINE	L1MB4	L1	chr16L1MB47865369	ProperStrand	1	chr16	7891274	7891337	LINE	Lx2	L1	chr16Lx27890993	NonProperStrand	1	1	-inf
chr7	107782941	107783031	protein_coding-noncoding	Rab6a	utr5	ENSMUSG00000030704	NonProperStrand	1	chr7	107782697	107782797	protein_coding	Rab6a	intron	ENSMUSG00000030704	NonProperStrand	1	1	-inf
chr5	107212518	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr2	163056501	163056627	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-8.6361
chr15	99313956	99314056	LINE	L1MD	L1	chr15L1MD99313946	ProperStrand	2	chr15	99313771	99313861	LTR	RLTR21	ERVK	chr15RLTR2199313495	NonProperStrand	2	2	-inf
chr16	91659180	91659200	protein_coding	Son	exon	ENSMUSG00000022961	ProperStrand	70	chr14	64839703	64839799	protein_coding	Msra	intron	ENSMUSG00000054733	ProperStrand	122	1	-10.2872
chr4	108505914	108507911	protein_coding	Btf3l4	utr5	ENSMUSG00000028568	NonProperStrand	6	chr9	110281300	110281334	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-12.3138
chr2	32183230	32184149	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	chr13	44869615	44869669	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-3.8071
chr1	151827927	151828027	LINE	Lx4A	L1	chr1Lx4A151827680	ProperStrand	1	chr1	151828328	151828418	LTR	ORR1A2	MaLR	chr1ORR1A2151828113	NonProperStrand	1	1	-inf
chr7	110332936	110333057	LINE	L1_Mm	L1	chr7L1_Mm110332849	NonProperStrand	1	chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	65341817	65341917	LINE	Lx5	L1	chr15Lx565341586	NonProperStrand	1	chr15	65341349	65341439	LINE	Lx	L1	chr15Lx65341044	NonProperStrand	1	1	-inf
chr15	53273099	53273223	LINE	Lx3C	L1	chr15Lx3C53273085	ProperStrand	4	chr15	53272952	53273084	LTR	MTE2a	MaLR	chr15MTE2a53272938	ProperStrand	4	4	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr10	80857569	80857659	protein_coding	2210404O07Rik	utr3	ENSMUSG00000078439	ProperStrand	1	1	-inf
chr11	116757692	116757747	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr13	20477429	20477526	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	1	-10.1257
chr7	97631608	97631680	SINE	B1F	Alu	chr7B1F97631569	ProperStrand	1	chr9	75042667	75042729	protein_coding	Myo5a	intron	ENSMUSG00000034593	ProperStrand	44	1	-inf
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr4	24557693	24557720	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-5.4901
chr4	86856329	86856781	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	chr15	86145258	86145304	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	NonProperStrand	31	1	-11.3756
chr7	116173324	116173363	protein_coding	Tub	intron	ENSMUSG00000031028	NonProperStrand	50	chr14	64278271	64278291	protein_coding	Xkr6	intron	ENSMUSG00000035067	NonProperStrand	62	1	-12.3247
chr3	133464163	133464252	LINE	L1Md_T	L1	chr3L1Md_T133460086	NonProperStrand	10	chr17	39848138	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-4.7139
chr2	138987179	138987279	LINE	L1_Mur3	L1	chr2L1_Mur3138987194	ProperStrand	1	chr2	138986895	138986985	SINE	B3A	B2	chr2B3A138986893	ProperStrand	1	1	-inf
chr18	34946654	34947981	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	chr16	90430999	90431044	protein_coding	Hunk	intron	ENSMUSG00000053414	ProperStrand	63	1	-11.2238
chr2	22744890	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr10	81070330	81070412	protein_coding	BC025920	intron	ENSMUSG00000074862	ProperStrand	52	1	-7.0930
chr3	14448852	14448942	LINE	L1Md_T	L1	chr3L1Md_T14447271	NonProperStrand	1	chr16	98063118	98063218	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	1	-inf
chr1	34131811	34131911	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr5	24485451	24485541	protein_coding	Prkag2	intron	ENSMUSG00000028944	NonProperStrand	128	1	-5.2990
chr6	40402068	40402098	protein_coding	Wee2	intron	ENSMUSG00000037159	NonProperStrand	8	chr14	8164413	8164510	protein_coding	Gm5797	intron	ENSMUSG00000072726	NonProperStrand	1	1	-inf
chr5	105801041	105801162	LINE	L1Md_F2	L1	chr5L1Md_F2105797620	NonProperStrand	27	chr6	30293076	30293095	LTR	RLTR11A	ERVK	chr6RLTR11A30292787	ProperStrand	1	1	-inf
chr17	39846832	39846933	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	46506162	46506198	SINE	MIRb	MIR	chr18MIRb46506124	ProperStrand	2	1	-5.3533
chr5	65335209	65335278	LINE	L1Md_F2	L1	chr5L1Md_F265334473	ProperStrand	2	chr17	39846337	39846371	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39846655	39847439	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	114955460	114955838	LTR	ORR1D2	MaLR	chr5ORR1D2114955449	ProperStrand	2	2	-inf
chr1	105417470	105417552	LINE	L1_Mus2	L1	chr1L1_Mus2105415990	NonProperStrand	1	chrX	73686423	73686479	LINE	MusHAL1	L1	chrXMusHAL173685909	NonProperStrand	1	1	-inf
chr4	61834230	61834320	LINE	L1Md_F2	L1	chr4L1Md_F261834172	ProperStrand	1	chr4	61834617	61834717	LINE	L1_Mus1	L1	chr4L1_Mus161834565	ProperStrand	1	1	-inf
chr6	37081466	37081595	protein_coding	Dgki	intron	ENSMUSG00000038665	ProperStrand	44	chr2	32231606	32231623	protein_coding	Ciz1	exon	ENSMUSG00000039205	ProperStrand	193	2	-16.2429
chr14	19788533	19788623	LINE	L1_Mus2	L1	chr14L1_Mus219786552	ProperStrand	10	chr14	19788620	19788720	LINE	Lx2	L1	chr14Lx219788632	ProperStrand	19	2	-20.7115
chr5	65388574	65388613	protein_coding	Fam114a1	intron	ENSMUSG00000029185	NonProperStrand	71	chr6	4912846	4912952	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-8.7627
chr17	39847636	39847658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	121659787	121659916	LTR	RLTR31A_Mm	ERVK	chr2RLTR31A_Mm121659737	NonProperStrand	2	1	-5.4040
chr17	39847826	39847868	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	3493469	3493529	protein_coding	Zfp358	intron	ENSMUSG00000047264	ProperStrand	1	1	-inf
chr17	39848263	39848317	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	15072243	15072265	LTR	RLTRETN_Mm	ERVK	chr17RLTRETN_Mm15072178	NonProperStrand	2	1	-8.4422
chr2	22744849	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	128433231	128433261	Simple_repeat	(T)n	Simple_repeat	chr6(T)n128433236	NonProperStrand	1	1	-inf
chr4	133313770	133322225	LINE	Lx4B	L1	chr4Lx4B133321894	NonProperStrand	1	chr9	123461884	123461908	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	5379271	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr19	37357048	37357109	protein_coding	Ide	intron	ENSMUSG00000056999	ProperStrand	48	2	-8.2211
chr4	137792178	137792278	protein_coding	Hp1bp3	intron	ENSMUSG00000028759	NonProperStrand	73	chr16	10842122	10842213	protein_coding	A630055G03Rik	utr3	ENSMUSG00000037991	NonProperStrand	7	4	-inf
chr6	47757665	47757745	protein_coding	Pdia4	intron	ENSMUSG00000025823	ProperStrand	3	chr1	89602006	89602059	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-14.4043
chr8	105530155	105530262	DNA	MER20	MER1_type	chr8MER20105530155	ProperStrand	1	chr8	105539448	105565790	LINE	L1Md_F2	L1	chr8L1Md_F2105539111	NonProperStrand	3	1	-inf
chr14	70348837	70348953	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	65	chr13	23574467	23574504	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	1	-12.7854
chr16	23110755	23110845	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr16	23110833	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-9.7800
chr12	83682876	83682976	LTR	ORR1B1-int	MaLR	chr12ORR1B1-int83682864	NonProperStrand	1	chr12	83682799	83682889	SINE	B2_Mm2	B2	chr12B2_Mm283682786	NonProperStrand	1	1	-inf
chr17	25262305	25262333	SINE	B1_Mus2	Alu	chr17B1_Mus225262238	NonProperStrand	5	chr17	25262034	25262151	protein_coding	Ptx4	exon	ENSMUSG00000044172	NonProperStrand	27	1	-19.1007
chrX	73643351	73643449	LINE	L1Md_F2	L1	chrXL1Md_F273643373	ProperStrand	1	chrX	73643250	73643340	protein_coding	4930428D18Rik	utr3	ENSMUSG00000073085	ProperStrand	12	1	-inf
chr13	21716394	21716532	LINE	Lx7	L1	chr13Lx721715740	ProperStrand	9	chr17	39847330	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-3.9821
chr12	33244360	33244450	LTR	RLTR47_MM	ERV1	chr12RLTR47_MM33244205	ProperStrand	5	chr12	33244484	33244584	Other	RMER1A	Other	chr12RMER1A33244491	ProperStrand	6	5	-inf
chr7	33322443	33322543	LINE	L1_Mus1	L1	chr7L1_Mus133321835	ProperStrand	1	chr7	31660489	31660579	protein_coding	Cd22	intron	ENSMUSG00000030577	ProperStrand	1	1	-inf
chr13	66441025	66441045	Satellite	MMSAT4	Satellite	chr13MMSAT466440816	ProperStrand	2	chr10	79040129	79040260	protein_coding	Theg	intron	ENSMUSG00000020317	ProperStrand	12	1	-inf
chr17	39847810	39847906	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	140041221	140041240	protein_coding	Mettl10	intron	ENSMUSG00000030960	NonProperStrand	3	1	-4.3512
chr1	67142143	67142233	LTR	MTC	MaLR	chr1MTC67142075	ProperStrand	1	chr1	67141744	67141844	SINE	MIRb	MIR	chr1MIRb67141703	ProperStrand	1	1	-inf
chr19	5796730	5796822	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr12	67667676	67667731	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-4.0163
chr9	110281284	110281340	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr5	113585529	113585575	protein_coding	2900026A02Rik	intron	ENSMUSG00000051339	NonProperStrand	27	1	-9.1690
chr12	68335489	68335589	LINE	L1Md_F2	L1	chr12L1Md_F268335447	NonProperStrand	1	chr12	68335918	68336008	LINE	L1Md_F2	L1	chr12L1Md_F268335671	NonProperStrand	1	1	-inf
chr7	112875307	112875336	LTR	MTC	MaLR	chr7MTC112875097	NonProperStrand	1	chr3	55319328	55319357	protein_coding	Dclk1	intron	ENSMUSG00000027797	ProperStrand	47	1	-inf
chr2	104394215	104394303	LINE	Lx7	L1	chr2Lx7104393690	NonProperStrand	1	chr2	104397533	104397576	pseudogene	Gm13884	.	ENSMUSG00000082379	NonProperStrand	1	1	-inf
chr14	19783870	19783895	LINE	L1Md_F2	L1	chr14L1Md_F219782998	ProperStrand	1	chr14	19786862	19786956	LINE	L1_Mus2	L1	chr14L1_Mus219786552	ProperStrand	10	1	-inf
chrX	74272482	74272621	SINE	B3	B2	chrXB374272477	ProperStrand	15	chr4	137559108	137559128	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-10.7478
chrX	74017151	74017168	LINE	L1VL1	L1	chrXL1VL174016297	NonProperStrand	4	chr7	3691312	3691864	pseudogene	Gm15922	.	ENSMUSG00000081665	ProperStrand	13	1	-inf
chr7	80028679	80028760	LINE	L1Md_F2	L1	chr7L1Md_F280028555	ProperStrand	6	chr17	39848099	39848168	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.7734
chr11	109011809	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	27120272	27120303	protein_coding	Ggnbp1	intron	ENSMUSG00000048731	ProperStrand	31	1	-7.4142
chr2	82716882	82716982	LINE	L1Md_F2	L1	chr2L1Md_F282716757	NonProperStrand	1	chr5	135161677	135161767	protein_coding	Limk1	intron	ENSMUSG00000029674	NonProperStrand	69	1	-inf
chr12	99645567	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr11	33754821	33754911	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	1	-13.1239
chr17	39848008	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	87993204	87993221	LTR	RLTRETN_Mm	ERVK	chr17RLTRETN_Mm87993019	ProperStrand	1	1	-inf
chrX	10718506	10718528	SINE	B3	B2	chrXB310718488	ProperStrand	4	chr12	80702821	80702858	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-15.5337
chr15	69830742	69830832	LINE	L1Md_F2	L1	chr15L1Md_F269829671	ProperStrand	1	chr15	69831090	69831190	LINE	L1Md_F2	L1	chr15L1Md_F269830872	ProperStrand	1	1	-inf
chr1	34218706	34218796	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr11	58032803	58032903	protein_coding	Irgm2	intron	ENSMUSG00000069874	ProperStrand	21	2	-14.1687
chr10	77508659	77508793	protein_coding	Dnmt3l	utr5	ENSMUSG00000000730	NonProperStrand	39	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	2	-15.4495
chr3	8362344	8362434	LINE	L1_Mus2	L1	chr3L1_Mus28360829	ProperStrand	1	chr3	9036787	9036887	SINE	B1_Mur3	Alu	chr3B1_Mur39036769	NonProperStrand	1	1	-inf
chr19	21792520	21792590	LINE	L1_Mus3	L1	chr19L1_Mus321792330	ProperStrand	1	chr9	123462088	123462121	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr18	75001893	75001943	LTR	MTA_Mm	MaLR	chr18MTA_Mm75001701	ProperStrand	11	chr2	84641920	84641981	protein_coding	Ube2l6	intron	ENSMUSG00000027078	NonProperStrand	7	1	-20.3469
chr10	79717989	79718034	protein_coding	Ndufs7	intron	ENSMUSG00000020153	ProperStrand	10	chr10	79730285	79730398	protein_coding	Dazap1	intron	ENSMUSG00000069565	ProperStrand	6	1	-22.0401
chr6	108076969	108077032	protein_coding-noncoding	Sumf1	utr3	ENSMUSG00000030101	NonProperStrand	2	chr6	108068324	108068378	protein_coding	Sumf1	exon	ENSMUSG00000030101	NonProperStrand	7	2	-inf
chr9	3944195	3944279	LTR	RLTR6-int	ERV1	chr9RLTR6-int3939743	NonProperStrand	1	chr19	40580055	40580075	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	1	-inf
chr1	183151751	183151841	SINE	B1_Mur1	Alu	chr1B1_Mur1183151763	ProperStrand	3	chr1	183151543	183151643	SINE	B1_Mus1	Alu	chr1B1_Mus1183151503	ProperStrand	2	2	-inf
chr8	3682133	3682175	protein_coding	Fcer2a	utr3	ENSMUSG00000005540	NonProperStrand	4	chr5	121186437	121186530	protein_coding	Oas2	intron	ENSMUSG00000032690	ProperStrand	14	1	-20.8232
chr5	147875633	147875691	protein_coding	Lnx2	intron	ENSMUSG00000016520	NonProperStrand	26	chr2	91654445	91654496	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-13.0881
chr12	59040424	59040501	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr4	119132507	119132585	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-5.7700
chr2	131918894	131918951	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	chr4	155421786	155421867	protein_coding	Ttll10	intron	ENSMUSG00000029074	ProperStrand	2	1	-19.0960
chr11	60792958	60793015	LTR	ORR1D2	MaLR	chr11ORR1D260792658	NonProperStrand	1	chr5	114852131	114852151	protein_coding	Ube3b	intron	ENSMUSG00000029577	NonProperStrand	10	1	-inf
chr5	85443171	85443271	LINE	Lx4A	L1	chr5Lx4A85442605	NonProperStrand	1	chr5	85443328	85443418	Simple_repeat	(TTCC)n	Simple_repeat	chr5(TTCC)n85443329	NonProperStrand	1	1	-inf
chr2	128455460	128455560	protein_coding-noncoding	Anapc1	utr3	ENSMUSG00000014355	NonProperStrand	1	chr2	128455155	128455245	protein_coding	Anapc1	intron	ENSMUSG00000014355	NonProperStrand	1	1	-inf
chr15	99395791	99395881	LINE	L1MB5	L1	chr15L1MB599395659	NonProperStrand	2	chr15	99395940	99396040	LTR	ORR1A1	MaLR	chr15ORR1A199395954	NonProperStrand	2	2	-inf
chr17	39846653	39846690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	141430748	141430796	SINE	B3A	B2	chr7B3A141430613	NonProperStrand	2	2	-inf
chr4	53860703	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr2	103460343	103463346	protein_coding	Abtb2	intron	ENSMUSG00000032724	NonProperStrand	27	1	-11.0405
chr14	114630607	114630697	LINE	L1_Mus3	L1	chr14L1_Mus3114630435	ProperStrand	1	chr8	91633752	91633852	SINE	B3A	B2	chr8B3A91633691	NonProperStrand	1	1	-inf
chr1	82412241	82412322	protein_coding	Rhbdd1	intron	ENSMUSG00000026142	ProperStrand	165	chr12	79466652	79466710	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	2	-8.1322
chr16	35981705	35981797	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr2	121196642	121196661	protein_coding	Strc	intron	ENSMUSG00000033498	NonProperStrand	6	1	-14.8915
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr10	80417214	80417317	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	11	1	-13.4114
chr3	116772820	116776566	protein_coding	1700061I17Rik	intron	ENSMUSG00000028009	ProperStrand	3	chr1	5138967	5139010	protein_coding	Atp6v1h	intron	ENSMUSG00000033793	ProperStrand	26	1	-inf
chr16	23111306	23111401	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr6	71882661	71882693	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-8.3929
chr15	55120133	55120208	LTR	RLTR25A	ERVK	chr15RLTR25A55119783	NonProperStrand	2	chr9	105680012	105680034	protein_coding	Col6a6	exon	ENSMUSG00000043719	NonProperStrand	26	1	-20.6107
chr4	38390668	38390768	LINE	L1M2	L1	chr4L1M238390030	NonProperStrand	1	chr4	38390883	38390974	LINE	L1M2	L1	chr4L1M238390871	NonProperStrand	1	1	-inf
chr11	74670110	74670179	protein_coding-noncoding	Sgsm2	utr3	ENSMUSG00000038351	NonProperStrand	2	chr5	107953085	107953126	protein_coding	1700028K03Rik	intron	ENSMUSG00000089798	NonProperStrand	21	1	-20.6625
chr8	105326443	105327089	SINE	PB1D10	Alu	chr8PB1D10105327022	ProperStrand	2	chr10	81182121	81182190	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	1	-17.2657
chr9	88442377	88442406	LTR	RLTR14	ERV1	chr9RLTR1488442265	NonProperStrand	1	chr7	56225858	56225974	SINE	ID4_	ID	chr7ID4_56225880	NonProperStrand	1	1	-inf
chr1	39015999	39016099	LINE	L1M4b	L1	chr1L1M4b39016013	ProperStrand	1	chr1	39015806	39015896	LTR	RMER19A	ERVK	chr1RMER19A39015784	ProperStrand	1	1	-inf
chr6	3201473	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr18	10618690	10618734	protein_coding	Snrpd1	intron	ENSMUSG00000002477	ProperStrand	8	1	-6.8272
chr15	15343869	15343959	LINE	Lx	L1	chr15Lx15343022	NonProperStrand	1	chr10	122565818	122565918	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-inf
chr1	122357204	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr3	32741379	32741494	protein_coding	Usp13	intron	ENSMUSG00000056900	ProperStrand	29	1	-10.3753
chr2	22744859	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr14	52074638	52074700	protein_coding	Vmn2r89	exon	ENSMUSG00000070448	NonProperStrand	29	1	-8.2643
chr6	47781622	47781648	SINE	PB1D9	Alu	chr6PB1D947781564	NonProperStrand	2	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-14.0145
chr19	21799930	21800021	DNA	RCHARR1	MER1_type	chr19RCHARR121799771	ProperStrand	7	chr19	21800080	21800180	LINE	L1Md_T	L1	chr19L1Md_T21800109	ProperStrand	8	7	-inf
chr2	91492598	91492641	protein_coding	Arhgap1	intron	ENSMUSG00000027247	ProperStrand	8	chr2	91480835	91481910	pseudogene	Gm13771	.	ENSMUSG00000083832	NonProperStrand	1	1	-inf
chr18	68534933	68535033	LINE	L1Md_T	L1	chr18L1Md_T68534889	ProperStrand	1	chr18	68535173	68535263	LINE	L1Md_T	L1	chr18L1Md_T68535115	NonProperStrand	1	1	-inf
chr14	110426321	110426411	LINE	Lx6	L1	chr14Lx6110425747	NonProperStrand	1	chr14	110426172	110426272	LINE	Lx6	L1	chr14Lx6110425747	ProperStrand	1	1	-inf
chr9	113668227	113668273	protein_coding	Clasp2	intron	ENSMUSG00000033392	NonProperStrand	60	chr7	116306359	116306415	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	1	-9.9568
chr4	117202570	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr8	60890742	60890830	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	2	-17.8060
chrX	87238359	87238396	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr5	146261271	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	2	-8.8055
chr10	18626562	18626667	LTR	RMER3D-int	ERVK	chr10RMER3D-int18626563	NonProperStrand	7	chr5	146261160	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-9.4279
chr6	72754414	72754506	DNA	Charlie6	MER1_type	chr6Charlie672754439	ProperStrand	8	chr6	72754300	72754417	SINE	B4A	B4	chr6B4A72754181	ProperStrand	7	3	-inf
chr11	109011785	109011827	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	55027192	55027244	protein_coding	Deptor	intron	ENSMUSG00000022419	NonProperStrand	21	1	-8.2014
chr12	110279267	110279284	protein_coding	Begain	intron	ENSMUSG00000040867	NonProperStrand	4	chr11	44548836	44548908	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	1	-16.2643
chr17	80625973	80626015	protein_coding-noncoding	Gemin6	utr5	ENSMUSG00000055760	NonProperStrand	2	chr17	80626215	80626269	protein_coding	Gemin6	intron	ENSMUSG00000055760	NonProperStrand	5	1	-inf
chr17	39847391	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	92330354	92330392	LTR	RMER13A	ERVK	chr8RMER13A92330314	ProperStrand	1	1	-inf
chr4	70246403	70246503	LINE	L1Md_F2	L1	chr4L1Md_F270245528	ProperStrand	4	chr7	99479612	99479702	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-13.0928
chr9	86699124	86699740	protein_coding	Snap91	intron	ENSMUSG00000033419	ProperStrand	34	chr19	31214752	31214769	protein_coding	Prkg1	intron	ENSMUSG00000052920	NonProperStrand	44	1	-13.7979
chr6	122735488	122735537	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr11	48805971	48806053	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-6.2804
chr17	39847160	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	44376504	44385109	protein_coding	Pkhd1l1	intron	ENSMUSG00000038725	NonProperStrand	20	2	-3.2818
chr14	29962546	29962612	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	ProperStrand	70	chr11	62675593	62675674	protein_coding	Fbxw10	intron	ENSMUSG00000090173	NonProperStrand	4	1	-17.5299
chr16	16353686	16353737	protein_coding	Dnm1l	intron	ENSMUSG00000022789	ProperStrand	30	chr13	97190570	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.4878
chr6	90857453	90857480	LTR	ORR1C1	MaLR	chr6ORR1C190857199	NonProperStrand	1	chr4	149120027	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr4	54601536	54601636	LINE	L2b	L2	chr4L2b54601509	ProperStrand	1	chr4	54601337	54601426	SINE	B4A	B4	chr4B4A54601225	NonProperStrand	1	1	-inf
chr2	113115310	113115412	LINE	Lx7	L1	chr2Lx7113115197	NonProperStrand	2	chr2	113115433	113115523	LINE	Lx8	L1	chr2Lx8113115441	NonProperStrand	2	2	-inf
chr1	84206540	84206561	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	chr3	94574715	94574798	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-10.2044
chr12	101058871	101058888	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	NonProperStrand	8	chr12	102670037	102670112	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-11.8937
chr7	73697627	73697717	LTR	MYSERV6-int	ERVK	chr7MYSERV6-int73697549	NonProperStrand	2	chr7	73697452	73697552	Simple_repeat	(CATATA)n	Simple_repeat	chr7(CATATA)n73697465	NonProperStrand	2	2	-inf
chr3	127323737	127323769	LINE	Lx8	L1	chr3Lx8127323507	ProperStrand	2	chr11	80012536	80012591	protein_coding	Rnf135	exon	ENSMUSG00000020707	ProperStrand	16	1	-inf
chr15	58999234	58999319	LTR	MLT1A1	MaLR	chr15MLT1A158999209	NonProperStrand	3	chr4	151847413	151847485	protein_coding	Kcnab2	intron	ENSMUSG00000028931	ProperStrand	216	2	-inf
chr1	181834583	181834683	Simple_repeat	(TCTA)n	Simple_repeat	chr1(TCTA)n181832549	NonProperStrand	8	chr2	25192736	25192826	protein_coding	Man1b1	intron	ENSMUSG00000036646	ProperStrand	5	1	-22.1864
chr17	39846335	39846373	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	31254724	31255253	lincRNA	Abhd1	intron	ENSMUSG00000006638	ProperStrand	2	1	-5.3533
chr7	123935823	123935913	LINE	L1Md_F3	L1	chr7L1Md_F3123934190	NonProperStrand	1	chr7	123936282	123936382	LINE	L1_Mus3	L1	chr7L1_Mus3123936282	NonProperStrand	1	1	-inf
chr9	45068642	45068662	protein_coding	Il10ra	intron	ENSMUSG00000032089	NonProperStrand	1	chr2	154453578	154453654	protein_coding	Zfp341	intron	ENSMUSG00000059842	ProperStrand	110	1	-inf
chr12	65366176	65366276	LINE	Lx8	L1	chr12Lx865365900	ProperStrand	1	chr12	65366756	65366846	LINE	Lx8	L1	chr12Lx865366543	ProperStrand	1	1	-inf
chr1	121561333	121561384	protein_coding	Ptpn4	intron	ENSMUSG00000026384	ProperStrand	15	chr4	53860708	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-12.2457
chr15	80078502	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-4.7571
chr8	95090003	95090051	LINE	L1_Mus1	L1	chr8L1_Mus195089989	ProperStrand	2	chr11	33243952	33244010	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	2	-inf
chr8	52337029	52337107	LTR	RMER6-int	ERVK	chr8RMER6-int52336818	ProperStrand	4	chr9	123462079	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr4	125929916	125929936	protein_coding	Mtap7d1	intron	ENSMUSG00000028849	NonProperStrand	1	chr6	54635731	54640797	protein_coding	2410066E13Rik	intron	ENSMUSG00000038065	ProperStrand	7	1	-inf
chr3	22138443	22138543	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int22133118	NonProperStrand	5	chr3	22138689	22138779	LTR	RLTR9E	ERVK	chr3RLTR9E22138639	NonProperStrand	2	1	-23.2669
chr2	69866495	69866595	LINE	L1MC4a	L1	chr2L1MC4a69866338	ProperStrand	1	chr2	69866215	69866499	SINE	B2_Mm1t	B2	chr2B2_Mm1t69866085	NonProperStrand	1	1	-inf
chr11	30170943	30171069	lincRNA	Gm8098	intron	ENSMUSG00000073073	NonProperStrand	7	chr16	92392592	92392610	protein_coding	Rcan1	utr3	ENSMUSG00000022951	NonProperStrand	1	1	-inf
chr16	43447767	43447793	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr17	13784745	13784869	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	1	-6.9956
chr15	78799104	78799178	protein_coding-noncoding	Triobp	utr5	ENSMUSG00000033088	NonProperStrand	2	chr15	78795274	78795358	protein_coding	Triobp	intron	ENSMUSG00000033088	NonProperStrand	10	1	-20.4467
chr5	136094315	136094370	SINE	B1_Mur4	Alu	chr5B1_Mur4136094308	ProperStrand	1	chr17	39843494	39843559	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr16	17093038	17097178	protein_coding-noncoding	Ppil2	utr3	ENSMUSG00000022771	ProperStrand	3	chr16	17092738	17097075	protein_coding	Ppil2	intron	ENSMUSG00000022771	ProperStrand	23	2	-20.6591
chr1	119029165	119029224	LINE	MusHAL1	L1	chr1MusHAL1119028154	ProperStrand	2	chr17	39847228	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr1	149653425	149653442	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int149652500	ProperStrand	16	chr6	140625652	140625773	protein_coding	Aebp2	intron	ENSMUSG00000030232	ProperStrand	26	1	-16.4237
chr13	44869605	44869704	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr10	110923744	110923834	protein_coding	Nap1l1	intron	ENSMUSG00000058799	ProperStrand	52	1	-4.7674
chr4	54473390	54473480	LTR	ORR1D2	MaLR	chr4ORR1D254473368	NonProperStrand	1	chr4	54473704	54473804	SINE	B1F2	Alu	chr4B1F254473697	NonProperStrand	1	1	-inf
chr17	39846415	39846487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	105583713	105583775	protein_coding	Serpina3k	utr3	ENSMUSG00000058207	ProperStrand	1	1	-inf
chr7	28433305	28433372	SINE	B2_Mm1a	B2	chr7B2_Mm1a28433263	NonProperStrand	1	chr1	155671291	155671348	protein_coding	Rgsl1	intron	ENSMUSG00000042641	NonProperStrand	24	1	-inf
chr16	71131088	71131108	LINE	L1_Mus3	L1	chr16L1_Mus371130820	NonProperStrand	1	chr1	85213600	85213661	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	ProperStrand	6	1	-inf
chr11	109011790	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	125557459	125557504	protein_coding	Ncor2	intron	ENSMUSG00000029478	NonProperStrand	39	1	-6.9543
chr14	19790349	19791540	LINE	Lx2	L1	chr14Lx219788632	ProperStrand	19	chr14	19791571	19797183	LINE	Lx2	L1	chr14Lx219792223	ProperStrand	2	2	-inf
chr17	39846747	39846837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	36003355	36003455	protein_coding	Htra3	intron	ENSMUSG00000029096	NonProperStrand	3	1	-4.3017
chr3	40692552	40692580	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	chr9	101075067	101075172	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	NonProperStrand	66	1	-13.1657
chr15	12897957	12898047	LTR	MTC	MaLR	chr15MTC12897837	ProperStrand	9	chr15	12898079	12898179	LTR	MTC	MaLR	chr15MTC12898094	ProperStrand	9	9	-inf
chr17	24721832	24721885	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr7	107623027	107623073	protein_coding	Ucp3	intron	ENSMUSG00000032942	ProperStrand	5	1	-14.1683
chr12	51895467	51895487	LINE	Lx9	L1	chr12Lx951895099	ProperStrand	1	chr1	37117952	37118076	protein_coding	Vwa3b	intron	ENSMUSG00000050122	ProperStrand	7	1	-inf
chr13	8894915	8894998	LTR	ETnERV2-int	ERVK	chr13ETnERV2-int8894843	NonProperStrand	1	chr17	39847324	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	124294893	124294996	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	chr4	56870724	56870745	protein_coding	Ctnnal1	intron	ENSMUSG00000038816	ProperStrand	58	1	-9.4502
chr7	18932940	18933015	protein_coding	Psg18	intron	ENSMUSG00000003505	NonProperStrand	5	chr9	32259961	32260000	protein_coding	Fli1	intron	ENSMUSG00000016087	NonProperStrand	57	1	-17.3037
chr6	15540356	15540456	LINE	L1Md_F2	L1	chr6L1Md_F215534937	ProperStrand	1	chr6	15540678	15540768	LINE	L1Md_F2	L1	chr6L1Md_F215540581	ProperStrand	1	1	-inf
chr1	171503068	171503136	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr2	27539803	27539854	protein_coding	Rxra	intron	ENSMUSG00000015846	NonProperStrand	11	1	-16.6073
chr17	39846352	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	137752230	137752280	protein_coding	Trip6	intron	ENSMUSG00000023348	NonProperStrand	1	1	-inf
chr15	16065690	16065780	LINE	Lx7	L1	chr15Lx716065702	NonProperStrand	1	chr15	16065527	16065627	LTR	RMER19B	ERVK	chr15RMER19B16065105	ProperStrand	1	1	-inf
chr2	61744463	61744563	LTR	MTE2a	MaLR	chr2MTE2a61744381	NonProperStrand	3	chr2	61744266	61744356	LTR	RMER4B	ERVK	chr2RMER4B61744077	NonProperStrand	3	3	-inf
chr4	149599325	149599415	LTR	MTD	MaLR	chr4MTD149599184	ProperStrand	3	chr4	149599503	149599603	SINE	B2_Mm2	B2	chr4B2_Mm2149599526	ProperStrand	1	1	-inf
chr17	39847173	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	69747128	69747182	SINE	B1_Mus2	Alu	chr11B1_Mus269747100	NonProperStrand	2	1	-6.5615
chr18	35849794	35849925	protein_coding	Dnajc18	intron	ENSMUSG00000024350	NonProperStrand	196	chr7	123351621	123351645	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	1	-7.3904
chr6	142588928	142588944	protein_coding	Abcc9	intron	ENSMUSG00000030249	ProperStrand	6	chr11	54487244	54487347	protein_coding	Rapgef6	intron	ENSMUSG00000037533	ProperStrand	26	1	-19.0481
chr10	120126219	120126301	LINE	L1MEc	L1	chr10L1MEc120126057	ProperStrand	1	chr17	39846862	39846880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	49477234	49477334	SINE	ID_B1	B4	chr14ID_B149477162	ProperStrand	1	chr10	84386477	84386567	protein_coding	Ric8b	intron	ENSMUSG00000035620	NonProperStrand	58	1	-inf
chr12	40421622	40421692	LINE	L1MEg	L1	chr12L1MEg40421387	NonProperStrand	1	chr17	39846412	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39848166	39848188	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	58473877	58474017	protein_coding	Clk1	exon	ENSMUSG00000026034	ProperStrand	6	1	-5.7734
chr2	116128861	116128951	DNA	URR1A	MER1_type	chr2URR1A116128744	NonProperStrand	1	chr2	116128672	116128772	LINE	L1MB1	L1	chr2L1MB1116128616	NonProperStrand	1	1	-inf
chr4	91510217	91510234	LINE	L1_Mus2	L1	chr4L1_Mus291509450	NonProperStrand	1	chr3	131018756	131018887	lincRNA	4930534D22Rik	exon	ENSMUSG00000091852	NonProperStrand	2	1	-inf
chr4	154019893	154019941	lincRNA	Gm13110	exon	ENSMUSG00000086810	NonProperStrand	25	chr3	9455310	9455390	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-8.2469
chr12	4593178	4613254	LTR	ORR1A2	MaLR	chr12ORR1A24592902	ProperStrand	1	chr12	4624913	4624963	protein_coding	Itsn2	intron	ENSMUSG00000020640	ProperStrand	58	1	-inf
chr17	39847736	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	142900093	142900126	protein_coding	Mki67	intron	ENSMUSG00000031004	ProperStrand	4	1	-3.7035
chr8	25716848	25716865	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	40	chr15	26487591	26487612	protein_coding	Fbxl7	intron	ENSMUSG00000043556	ProperStrand	18	1	-15.2992
chr14	113571321	113571343	LINE	L1Md_F3	L1	chr14L1Md_F3113571219	ProperStrand	2	chr17	39847384	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr10	42209962	42210034	Low_complexity	C-rich	Low_complexity	chr10C-rich42209934	NonProperStrand	1	chr10	42210146	42210208	SINE	RSINE1	B4	chr10RSINE142210151	ProperStrand	1	1	-inf
chr12	17690870	17690904	SINE	ID_B1	B4	chr12ID_B117690762	NonProperStrand	6	chr12	17791788	17791895	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-13.3571
chr6	29363390	29363409	protein_coding	Ccdc136	intron	ENSMUSG00000029769	ProperStrand	35	chr13	97190562	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.1809
chr15	49157405	49157495	LTR	IAPEz-int	ERVK	chr15IAPEz-int49154546	ProperStrand	1	chr15	49157583	49157683	LTR	IAPEz-int	ERVK	chr15IAPEz-int49157552	ProperStrand	1	1	-inf
chr15	80082858	80082919	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr1	59191953	59192031	protein_coding	Mpp4	intron	ENSMUSG00000079550	ProperStrand	26	1	-9.7735
chr9	7516597	7516687	LINE	Lx3_Mus	L1	chr9Lx3_Mus7511685	ProperStrand	3	chr9	7516846	7516946	LTR	RMER3D-int	ERVK	chr9RMER3D-int7516776	NonProperStrand	1	1	-inf
chr10	83407169	83407220	LTR	MLT1K	MaLR	chr10MLT1K83406901	NonProperStrand	1	chr17	39846659	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	108356936	108357004	DNA	RCHARR1	MER1_type	chr13RCHARR1108356937	NonProperStrand	2	chr13	108373032	108373098	LINE	L1M3	L1	chr13L1M3108372721	ProperStrand	1	1	-inf
chr4	65351747	65351764	protein_coding	Astn2	intron	ENSMUSG00000028373	NonProperStrand	50	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.8993
chr13	97478899	97479000	LTR	RLTR10	ERVK	chr13RLTR1097478775	NonProperStrand	3	chr17	39847474	39847913	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-8.1061
chr5	146261272	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr11	88585622	88585680	lincRNA	C030037D09Rik	intron	ENSMUSG00000087574	NonProperStrand	108	1	-6.7093
chr1	16564131	16564224	protein_coding	Ube2w	intron	ENSMUSG00000025939	ProperStrand	15	chr6	125121531	125121582	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	78	3	-21.4957
chr17	89848201	89848219	LTR	LTR16A1	ERVL	chr17LTR16A189848002	NonProperStrand	1	chr8	107580710	107580794	protein_coding	Ces3a	intron	ENSMUSG00000069922	NonProperStrand	18	1	-inf
chr1	150434791	150434881	LTR	ORR1C2-int	MaLR	chr1ORR1C2-int150434377	NonProperStrand	1	chr1	150434901	150435001	LTR	ORR1C2	MaLR	chr1ORR1C2150434892	NonProperStrand	1	1	-inf
chr1	89137065	89137137	SINE	ID_B1	B4	chr1ID_B189136988	NonProperStrand	1	chr1	89136994	89137066	protein_coding	Eif4e2	utr3	ENSMUSG00000026254	ProperStrand	80	1	-inf
chr17	39847212	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	27683908	27683952	SINE	B1_Mur4	Alu	chr3B1_Mur427683842	NonProperStrand	1	1	-inf
chr4	74286001	74286069	LINE	L1Md_A	L1	chr4L1Md_A74283513	NonProperStrand	7	chr17	39848245	39848303	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.4467
chr7	129408969	129409078	LINE	L1_Mm	L1	chr7L1_Mm129408714	NonProperStrand	2	chr9	123462036	123462072	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	14120159	14120208	protein_coding	Tbce	intron	ENSMUSG00000039233	NonProperStrand	14	chr13	14064029	14120160	protein_coding	B3galnt2	intron	ENSMUSG00000039242	ProperStrand	34	1	-16.1393
chr11	109011647	109011702	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	43261212	43261236	LINE	L1_Mus1	L1	chr15L1_Mus143260636	NonProperStrand	4	1	-11.7441
chr1	179193874	179193969	LINE	L1_Mur3	L1	chr1L1_Mur3179193898	ProperStrand	2	chr1	179195761	179195780	LTR	MTE-int	MaLR	chr1MTE-int179195069	NonProperStrand	1	1	-inf
chr1	161047384	161047490	LINE	L1MEc	L1	chr1L1MEc161047298	NonProperStrand	1	chr17	39846416	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	121916205	121916263	LTR	MTEa	MaLR	chr14MTEa121915943	ProperStrand	2	chr14	121916780	121916828	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n121916758	ProperStrand	1	1	-inf
chr7	28822110	28822138	LINE	Lx3C	L1	chr7Lx3C28821181	ProperStrand	34	chr17	39843721	39843818	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-4.0274
chr9	119295888	119295935	protein_coding	Xylb	intron	ENSMUSG00000035769	NonProperStrand	58	chr9	99557386	99557474	protein_coding	Dzip1l	intron	ENSMUSG00000037784	NonProperStrand	6	1	-16.8940
chr12	108574559	108574676	LTR	MTEa	MaLR	chr12MTEa108574544	NonProperStrand	1	chr6	3201094	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr11	109011794	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	103349859	103349890	lincRNA	5830418P13Rik	intron	ENSMUSG00000086236	ProperStrand	54	1	-6.3076
chr10	81146685	81146717	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int81146602	NonProperStrand	1	chr10	81147402	81147482	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int81147419	NonProperStrand	3	1	-inf
chr14	54896959	54897021	LINE	L1_Mur2	L1	chr14L1_Mur254896518	NonProperStrand	1	chr17	39847621	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846635	39846709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	110817829	110817887	SINE	B3	B2	chr9B3110817818	NonProperStrand	1	1	-inf
chr10	78285071	78285161	LTR	IAPEz-int	ERVK	chr10IAPEz-int78282783	ProperStrand	2	chr10	78273019	78273119	protein_coding	Slc1a6	intron	ENSMUSG00000005357	NonProperStrand	11	1	-21.2279
chr6	3201478	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	81180386	81180618	SINE	B2_Mm1t	B2	chr10B2_Mm1t81180542	ProperStrand	21	1	-4.8667
chr17	39847552	39847584	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	56231398	56231482	LTR	MER31B	ERV1	chr7MER31B56231305	ProperStrand	1	1	-inf
chr8	18744220	18744310	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr15	7138255	7138355	protein_coding	Lifr	intron	ENSMUSG00000054263	ProperStrand	64	1	-6.7815
chr13	44806209	44806285	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n44806228	ProperStrand	1	chr6	112617038	112617083	protein_coding	Rad18	intron	ENSMUSG00000030254	ProperStrand	76	1	-inf
chr11	25366711	25366811	LTR	ORR1C2	MaLR	chr11ORR1C225366660	NonProperStrand	1	chr11	25366932	25367022	LTR	ORR1C2	MaLR	chr11ORR1C225366890	NonProperStrand	1	1	-inf
chr19	14726668	14726758	LINE	L1M5	L1	chr19L1M514726591	ProperStrand	1	chr19	14726909	14727009	SINE	PB1D7	Alu	chr19PB1D714726909	ProperStrand	1	1	-inf
chr5	35714105	35714195	LINE	L1MC4	L1	chr5L1MC435713996	NonProperStrand	1	chr18	46304431	46304531	Other	RMER1B	Other	chr18RMER1B46304053	NonProperStrand	6	1	-inf
chr4	132498685	132498770	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n132498378	NonProperStrand	1	chr18	84559001	84559036	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-inf
chr12	116400017	116400042	LINE	L1_Mus4	L1	chr12L1_Mus4116399715	NonProperStrand	3	chr9	123462123	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr4	129069303	129069403	LTR	RMER15	ERVL	chr4RMER15129069221	ProperStrand	1	chr4	129069813	129069903	LTR	RMER20B	ERVK	chr4RMER20B129069691	ProperStrand	1	1	-inf
chr1	130443029	130443119	SINE	B3A	B2	chr1B3A130442994	NonProperStrand	1	chr1	130443235	130443335	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n130443259	ProperStrand	1	1	-inf
chr3	32665875	32665896	LINE	Lx5	L1	chr3Lx532664856	ProperStrand	1	chr12	79507108	79507227	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr17	39842998	39843033	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	64121366	64121444	LTR	RMER17C	ERVK	chr17RMER17C64121207	ProperStrand	1	1	-inf
chr5	115600959	115601059	protein_coding-noncoding	Mlec	utr3	ENSMUSG00000048578	NonProperStrand	2	chr5	115600863	115600953	protein_coding	Mlec	exon	ENSMUSG00000048578	NonProperStrand	54	2	-inf
chr3	60495867	60495967	LTR	MTA_Mm-int	MaLR	chr3MTA_Mm-int60494874	NonProperStrand	1	chr3	60496153	60496243	LTR	MTA_Mm	MaLR	chr3MTA_Mm60496049	NonProperStrand	1	1	-inf
chr11	78182961	78183528	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr1	136364891	136364967	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-9.4574
chr4	79062665	79062765	LTR	IAP-d-int	ERVK	chr4IAP-d-int79062585	ProperStrand	1	chr4	79062870	79062960	LTR	RMER16-int	ERVK	chr4RMER16-int79062884	ProperStrand	1	1	-inf
chr5	137526436	137526536	SINE	B2_Mm2	B2	chr5B2_Mm2137526413	NonProperStrand	2	chr5	137526298	137526388	SINE	ID_B1	B4	chr5ID_B1137526232	ProperStrand	9	1	-inf
chr11	88703622	88703755	protein_coding	Akap1	intron	ENSMUSG00000018428	ProperStrand	140	chr11	84050900	84050916	protein_coding	Acaca	intron	ENSMUSG00000020532	ProperStrand	53	1	-10.5713
chr10	43481080	43481122	LTR	RMER6B	ERVK	chr10RMER6B43480923	NonProperStrand	1	chr10	83013250	83013302	protein_coding	A230046K03Rik	intron	ENSMUSG00000034560	ProperStrand	68	1	-inf
chr5	146261024	146261046	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	52058487	52058521	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	1	-4.2027
chr14	121789505	121789605	DNA	MER119	MER1_type	chr14MER119121789490	ProperStrand	1	chr14	121789762	121789852	DNA	MER119	MER1_type	chr14MER119121789767	ProperStrand	2	1	-inf
chr12	87534298	87534398	lincRNA	Gm805	exon	ENSMUSG00000087426	ProperStrand	2	chr8	3803242	3803332	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	156	2	-inf
chr6	67277874	67277924	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr9	21314510	21314583	protein_coding	Tmed1	exon	ENSMUSG00000032180	NonProperStrand	1	1	-inf
chr11	50207828	50207856	protein_coding	Rufy1	intron	ENSMUSG00000020375	ProperStrand	62	chr12	109650859	109650918	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-7.7266
chr19	51163470	51163570	LINE	L1Md_T	L1	chr19L1Md_T51160404	ProperStrand	1	chr14	33967481	33967571	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr16	13331105	13331131	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	chr2	152250597	152254218	protein_coding	6820408C15Rik	intron	ENSMUSG00000032680	ProperStrand	28	1	-11.6847
chr17	88645398	88645488	LINE	L1M2	L1	chr17L1M288645306	NonProperStrand	4	chr17	88645488	88645588	SINE	B1_Mur4	Alu	chr17B1_Mur488645464	NonProperStrand	4	4	-inf
chr9	17987811	17987834	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr17	45571130	45571466	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	1	-10.4414
chr2	78168951	78169041	LINE	L1_Mur1	L1	chr2L1_Mur178167653	NonProperStrand	1	chr2	78169236	78169336	LINE	L1_Mur1	L1	chr2L1_Mur178168956	NonProperStrand	1	1	-inf
chr6	57078312	57078402	LINE	L1Md_F2	L1	chr6L1Md_F257077598	ProperStrand	1	chr6	57078661	57078761	LINE	L1_Mur2	L1	chr6L1_Mur257078633	NonProperStrand	1	1	-inf
chr17	39847636	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	62872907	62872997	SINE	B3	B2	chr9B362872925	ProperStrand	2	2	-inf
chr17	39845505	39845540	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	66135744	66135859	LINE	Lx9	L1	chr7Lx966135759	ProperStrand	2	1	-9.3724
chr6	3201482	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	76150075	76150141	protein_coding	Rfesd	intron	ENSMUSG00000043190	NonProperStrand	4	1	-8.3508
chr17	20965625	20965647	LINE	L1_Mur3	L1	chr17L1_Mur320964963	ProperStrand	24	chr18	24819822	24819928	protein_coding	Mocos	intron	ENSMUSG00000039616	ProperStrand	48	1	-14.3310
chr14	120328295	120328395	LINE	L1ME4a	L1	chr14L1ME4a120328313	NonProperStrand	2	chr14	120328121	120328211	Simple_repeat	(TTC)n	Simple_repeat	chr14(TTC)n120328125	ProperStrand	1	1	-inf
chr1	128007511	128007546	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	chr10	63258088	63258122	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-7.0207
chr17	39847102	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	112974697	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	29	-5.1350
chr14	111505665	111505765	LINE	L1Md_F2	L1	chr14L1Md_F2111505008	ProperStrand	1	chr14	33967400	33967490	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr1	100180184	100180215	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr13	49703248	49704297	protein_coding	Ogn	intron	ENSMUSG00000021390	ProperStrand	39	1	-11.5332
chr19	36371486	36371585	LINE	Lx7	L1	chr19Lx736369945	ProperStrand	1	chr14	33967750	33967794	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-inf
chr9	120573639	120574136	LTR	MTE2b	MaLR	chr9MTE2b120573676	NonProperStrand	9	chr9	120573813	120574236	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120574039	ProperStrand	43	4	-inf
chr5	63424205	63424306	LINE	L1M2	L1	chr5L1M263424196	NonProperStrand	2	chr5	63423888	63423978	LTR	ORR1E	MaLR	chr5ORR1E63423905	NonProperStrand	2	2	-inf
chr7	116216678	116216777	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	chr8	123285356	123285393	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.0822
chr6	30259345	30259372	lincRNA	1700095J07Rik	intron	ENSMUSG00000084861	NonProperStrand	16	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-9.2358
chr17	39846781	39846871	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	75065054	75065154	LTR	MTC	MaLR	chr18MTC75064796	ProperStrand	1	1	-inf
chr4	130527765	130527848	LTR	MTE2b	MaLR	chr4MTE2b130527652	ProperStrand	1	chr18	68322594	68322612	protein_coding	D18Ertd653e	intron	ENSMUSG00000024544	NonProperStrand	35	1	-inf
chr3	32513010	32513086	protein_coding	Gnb4	utr5	ENSMUSG00000027669	NonProperStrand	12	chr14	118915213	118922247	protein_coding	Abcc4	intron	ENSMUSG00000032849	ProperStrand	24	3	-inf
chr7	143557996	143559143	LINE	L1Md_F3	L1	chr7L1Md_F3143559089	ProperStrand	1	chr8	107096425	107096441	Simple_repeat	(GAA)n	Simple_repeat	chr8(GAA)n107096251	NonProperStrand	18	1	-inf
chr17	39847690	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	4772363	4772444	SINE	ID_B1	B4	chr19ID_B14772328	ProperStrand	5	1	-3.2379
chr6	136545851	136545886	protein_coding	Atf7ip	intron	ENSMUSG00000030213	ProperStrand	23	chr5	27741041	27741066	protein_coding	Dpp6	intron	ENSMUSG00000061576	NonProperStrand	86	1	-13.2413
chr17	39846759	39846813	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	81792904	81793027	SINE	B1_Mus1	Alu	chr15B1_Mus181792862	ProperStrand	1	1	-inf
chr6	95683156	95683234	LTR	ORR1B1	MaLR	chr6ORR1B195683062	ProperStrand	2	chr6	95683746	95683796	LTR	RMER5	ERV1	chr6RMER595683674	NonProperStrand	3	2	-inf
chr18	35554489	35565939	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr13	97190558	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-3.4070
chr11	62604512	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr17	39847404	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	5	-3.0156
chr15	98039681	98039746	protein_coding-noncoding	Olfr287	utr3	ENSMUSG00000090129	ProperStrand	8	chr1	125403556	125405920	protein_coding	Dpp10	intron	ENSMUSG00000036815	ProperStrand	52	1	-16.4461
chr17	35838002	35838031	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr11	84181395	84181436	protein_coding	Acaca	intron	ENSMUSG00000020532	ProperStrand	53	1	-9.5613
chr6	108427989	108428045	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr2	160698158	160698227	sense_intronic	Gm16751	.	ENSMUSG00000085303	NonProperStrand	12	1	-11.7091
chr2	121936027	121936127	protein_coding	Spg11	intron	ENSMUSG00000033396	NonProperStrand	21	chr5	114777194	114777284	protein_coding	Myo1h	intron	ENSMUSG00000066952	ProperStrand	46	4	-inf
chr9	123461957	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr16	11143901	11144005	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	9	-4.0303
chrX	104290371	104290472	protein_coding	P2ry10	intron	ENSMUSG00000050921	NonProperStrand	6	chr5	38673038	38673091	protein_coding	Otop1	intron	ENSMUSG00000051596	NonProperStrand	55	2	-inf
chr2	53277551	53277651	LINE	L1Md_F2	L1	chr2L1Md_F253276849	ProperStrand	1	chr2	53277781	53277871	LINE	Lx	L1	chr2Lx53277685	NonProperStrand	1	1	-inf
chr8	36498477	36505563	DNA	URR1A	MER1_type	chr8URR1A36505524	NonProperStrand	1	chr3	136851141	136851215	LTR	ORR1A1	MaLR	chr3ORR1A1136850954	NonProperStrand	1	1	-inf
chr17	39847271	39847335	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	80504418	80504439	protein_coding	Gria2	intron	ENSMUSG00000033981	NonProperStrand	6	2	-6.9321
chr6	89546798	89546833	LTR	ORR1B1	MaLR	chr6ORR1B189546632	ProperStrand	1	chr6	89538219	89538302	protein_coding	Chchd6	intron	ENSMUSG00000030086	ProperStrand	188	1	-inf
chr5	19920084	19920104	protein_coding	Magi2	intron	ENSMUSG00000040003	ProperStrand	33	chr6	83306127	83306246	protein_coding	Bola3	intron	ENSMUSG00000045160	NonProperStrand	9	1	-17.1411
chr13	64153004	64153084	LTR	MTD	MaLR	chr13MTD64152954	ProperStrand	1	chr17	39847956	39848021	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	26007925	26008015	LTR	MTC	MaLR	chr2MTC26007919	NonProperStrand	3	chr2	26007805	26007905	Other	RMER1C	Other	chr2RMER1C26007786	ProperStrand	4	3	-inf
chr1	88273740	88273801	DNA	Charlie8	MER1_type	chr1Charlie888273628	ProperStrand	6	chr1	88273379	88273425	SINE	B3	B2	chr1B388273312	NonProperStrand	4	1	-inf
chr4	140704445	140704549	protein_coding	Fbxo42	intron	ENSMUSG00000028920	ProperStrand	227	chr16	19883805	19883928	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-6.2589
chr12	28831403	28831503	LINE	L1M2	L1	chr12L1M228830787	ProperStrand	1	chr12	28831585	28831675	LINE	L1M2	L1	chr12L1M228831551	ProperStrand	1	1	-inf
chr18	37859576	37859640	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	chr9	78466005	78466065	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-6.2704
chr11	114833124	114833224	LINE	L2c	L2	chr11L2c114833145	NonProperStrand	1	chr11	114833488	114833578	SINE	B3	B2	chr11B3114833447	NonProperStrand	1	1	-inf
chr17	21725366	21725405	protein_coding	Zfp948	exon	ENSMUSG00000067931	ProperStrand	4	chr7	110048984	110049624	protein_coding	Olfr570	exon	ENSMUSG00000073964	ProperStrand	1	1	-inf
chr18	34233954	34234038	LINE	Lx8	L1	chr18Lx834233744	ProperStrand	3	chr15	35463810	35463866	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-16.8745
chr1	26778371	26778460	LINE	Lx9	L1	chr1Lx926777929	NonProperStrand	1	chr1	26778530	26778630	LINE	Lx9	L1	chr1Lx926778431	NonProperStrand	1	1	-inf
chr14	75651427	75651489	protein_coding	Cpb2	intron	ENSMUSG00000021999	NonProperStrand	1	chr9	35435715	35435734	protein_coding	Pate2	intron	ENSMUSG00000074452	NonProperStrand	4	1	-inf
chr8	84699695	84699711	LINE	Lx2	L1	chr8Lx284698625	NonProperStrand	21	chr9	59660725	59660859	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-8.3930
chr14	57385363	57385380	protein_coding	Pspc1	intron	ENSMUSG00000021938	ProperStrand	21	chr14	64264049	64264184	protein_coding	Xkr6	intron	ENSMUSG00000035067	NonProperStrand	62	1	-14.0878
chr14	103146043	103146916	LINE	Lx5	L1	chr14Lx5103146535	ProperStrand	2	chr14	103145931	103146031	SINE	B4	B4	chr14B4103145843	ProperStrand	2	2	-inf
chr7	135700999	135701932	LTR	ORR1C1	MaLR	chr7ORR1C1135700946	NonProperStrand	10	chr9	123461881	123461923	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr19	8724249	8724326	SINE	B1F	Alu	chr19B1F8724255	ProperStrand	9	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-15.6889
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr8	79643620	79643646	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	1	-10.4248
chr3	137865173	137865535	LINE	L1Md_A	L1	chr3L1Md_A137863249	NonProperStrand	43	chr1	72832332	72832419	SINE	RSINE1	B4	chr1RSINE172832335	NonProperStrand	1	1	-inf
chr2	32219612	32219662	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	193	chr8	124653815	124653920	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-3.9596
chr6	70013006	70013096	LINE	L1VL2	L1	chr6L1VL270013001	ProperStrand	1	chr6	70012874	70012974	LINE	L1_Mus3	L1	chr6L1_Mus370011017	ProperStrand	1	1	-inf
chr17	4082345	4082393	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	32159655	32159761	protein_coding	Golga2	exon	ENSMUSG00000002546	ProperStrand	57	1	-7.7636
chr11	64479406	64479496	LINE	L1MC1	L1	chr11L1MC164479422	ProperStrand	1	chr11	64479534	64479634	SINE	B4A	B4	chr11B4A64479539	ProperStrand	1	1	-inf
chr7	100629964	100630006	LTR	RMER10A	ERVL	chr7RMER10A100629918	ProperStrand	1	chr6	136804016	136804127	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	1	-inf
chrX	144883521	144883537	Simple_repeat	(CAAA)n	Simple_repeat	chrX(CAAA)n144883512	ProperStrand	4	chr3	84004608	84004745	protein_coding	Trim2	intron	ENSMUSG00000027993	ProperStrand	141	1	-15.9977
chr18	34864247	34864305	protein_coding	Gfra3	intron	ENSMUSG00000024366	NonProperStrand	18	chr9	118674951	118674999	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.3849
chr2	59200265	59200319	LTR	ORR1E	MaLR	chr2ORR1E59200204	ProperStrand	1	chr7	6145360	6145413	LTR	ORR1A2	MaLR	chr7ORR1A26145142	NonProperStrand	1	1	-inf
chr14	89300267	89300357	LINE	MusHAL1	L1	chr14MusHAL189300128	ProperStrand	1	chr14	89300038	89300138	Simple_repeat	(TTC)n	Simple_repeat	chr14(TTC)n89299956	NonProperStrand	1	1	-inf
chr9	19971168	19971189	LINE	L1_Mur1	L1	chr9L1_Mur119970512	ProperStrand	1	chr9	53277930	53277948	protein_coding	Atm	intron	ENSMUSG00000034218	NonProperStrand	4	1	-inf
chr10	83487853	83487953	DNA	RCHARR1	MER1_type	chr10RCHARR183487501	ProperStrand	2	chr10	83487953	83488043	SINE	B3	B2	chr10B383487970	NonProperStrand	2	2	-inf
chr17	39847134	39847219	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	47757709	47757760	protein_coding	Pdia4	intron	ENSMUSG00000025823	ProperStrand	3	1	-5.4882
chr7	47188521	47188611	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	chr8	58467999	58468099	protein_coding	Glra3	intron	ENSMUSG00000038257	ProperStrand	5	1	-18.3183
chr10	117062866	117063740	LTR	ORR1E	MaLR	chr10ORR1E117062865	ProperStrand	5	chr10	33138935	33138954	protein_coding	Trdn	intron	ENSMUSG00000019787	NonProperStrand	18	1	-20.3145
chr11	5411907	5412021	SINE	B3	B2	chr11B35411821	ProperStrand	1	chr11	5406882	5406909	SINE	RSINE1	B4	chr11RSINE15406833	NonProperStrand	1	1	-inf
chr6	134165910	134165977	protein_coding	Etv6	intron	ENSMUSG00000030199	ProperStrand	187	chr12	109739860	109739937	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-5.5480
chr12	111244174	111244274	LINE	L1_Mur3	L1	chr12L1_Mur3111244199	ProperStrand	1	chr12	111244088	111244178	LINE	Lx4A	L1	chr12Lx4A111244090	ProperStrand	1	1	-inf
chr13	21907106	21907194	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr5	146261174	146261232	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-7.1436
chrX	48121918	48121935	LINE	L1Md_F2	L1	chrXL1Md_F248119935	NonProperStrand	5	chr17	39847640	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr2	119677292	119677347	LTR	ORR1C2-int	MaLR	chr2ORR1C2-int119677245	ProperStrand	1	chr17	34115044	34115074	pseudogene	H2-K2	.	ENSMUSG00000067203	ProperStrand	36	1	-inf
chr2	180711243	180711263	protein_coding-noncoding	Arfgap1	utr5	ENSMUSG00000027575	NonProperStrand	15	chr15	83149691	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-13.1571
chr5	65560767	65560835	LINE	L1MB5	L1	chr5L1MB565560516	ProperStrand	1	chr3	89398626	89398684	protein_coding	Kcnn3	intron	ENSMUSG00000000794	NonProperStrand	62	1	-inf
chr11	109011792	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	16914715	16914733	protein_coding	Ppm1f	intron	ENSMUSG00000026181	ProperStrand	31	1	-7.4142
chr5	30060667	30060779	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr14	33967685	33968006	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	2	-19.6497
chr3	122700503	122700593	LINE	Lx4A	L1	chr3Lx4A122700271	ProperStrand	2	chr3	122700638	122700738	LTR	MTE2b	MaLR	chr3MTE2b122700658	NonProperStrand	2	2	-inf
chr17	39847341	39847380	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	87924666	87924734	protein_coding	Iqgap3	utr3	ENSMUSG00000028068	NonProperStrand	2	1	-5.4040
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr18	80443428	80443505	protein_coding	Hsbp1l1	intron	ENSMUSG00000078963	ProperStrand	64	1	-4.3693
chr16	24944300	24944334	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr7	96548988	96549103	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-6.0309
chr18	70246887	70246987	protein_coding	Rab27b	intron	ENSMUSG00000024511	ProperStrand	3	chr14	33967393	33967483	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-17.9278
chr15	8136284	8136384	protein_coding-noncoding	2410089E03Rik	utr5	ENSMUSG00000039801	ProperStrand	2	chr15	8136181	8136271	protein_coding	2410089E03Rik	exon	ENSMUSG00000039801	ProperStrand	47	2	-inf
chr4	133066849	133066895	LTR	BGLII_B	ERVK	chr4BGLII_B133066770	ProperStrand	1	chr4	133066117	133066167	SINE	B2_Mm2	B2	chr4B2_Mm2133066021	ProperStrand	1	1	-inf
chrX	74227279	74227502	LINE	L1Md_F2	L1	chrXL1Md_F274226898	NonProperStrand	14	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-11.8610
chr17	30722474	30722574	LINE	L1MB8	L1	chr17L1MB830722352	NonProperStrand	2	chr3	31206266	31206356	lincRNA	Gm15496	intron	ENSMUSG00000085953	ProperStrand	11	1	-21.2279
chr2	5853169	5853195	protein_coding	Dhtkd1	intron	ENSMUSG00000025815	NonProperStrand	42	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.2808
chr7	110252502	110252595	LINE	L1Md_A	L1	chr7L1Md_A110249435	ProperStrand	2	chr18	45718944	45718964	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	1	-20.3523
chr1	161035849	161035910	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr5	107907409	107907477	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-11.1263
chr8	74598226	74598326	LTR	MuRRS-int	ERV1	chr8MuRRS-int74598085	NonProperStrand	1	chr8	74597947	74598037	SINE	B1_Mm	Alu	chr8B1_Mm74597924	ProperStrand	1	1	-inf
chr14	55634362	55634378	protein_coding	Ngdn	utr5	ENSMUSG00000022204	NonProperStrand	18	chr4	56932450	56932570	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	140	1	-12.7656
chr13	29906756	29906811	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr9	57429037	57429132	protein_coding	Scamp2	intron	ENSMUSG00000040188	NonProperStrand	41	1	-8.7133
chr15	59021517	59021569	SINE	MIR	MIR	chr15MIR59021521	NonProperStrand	2	chr15	59037201	59037288	SINE	MIRb	MIR	chr15MIRb59037148	NonProperStrand	3	2	-inf
chr11	16754830	16754848	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	chr13	92440633	92440650	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	NonProperStrand	97	1	-12.9991
chr8	36217071	36217186	LTR	RMER20B	ERVK	chr8RMER20B36217089	NonProperStrand	1	chr6	89429428	89429450	protein_coding	Chchd6	intron	ENSMUSG00000030086	ProperStrand	188	1	-inf
chr9	65201725	65201755	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr7	112790526	112790609	protein_coding	Fxc1	utr3	ENSMUSG00000089847	ProperStrand	81	1	-10.4536
chr18	49864767	49864845	protein_coding	Dtwd2	intron	ENSMUSG00000024505	NonProperStrand	26	chrX	84969800	84969818	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	ProperStrand	52	1	-14.0074
chr15	96442963	96443022	protein_coding	Slc38a1	intron	ENSMUSG00000023169	ProperStrand	51	chr5	123426341	123426400	protein_coding	Kdm2b	intron	ENSMUSG00000029475	NonProperStrand	97	1	-11.3845
chr17	39847905	39848005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	119642435	119642525	LTR	ORR1B1-int	MaLR	chr1ORR1B1-int119642225	ProperStrand	2	2	-inf
chr10	12423297	12423371	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	chr11	67973318	67984617	protein_coding	Stx8	intron	ENSMUSG00000020903	ProperStrand	40	1	-11.0012
chr10	46043252	46043352	LTR	ORR1A0	MaLR	chr10ORR1A046043227	NonProperStrand	1	chr10	46043007	46043097	LTR	RLTR47_MM	ERV1	chr10RLTR47_MM46042827	ProperStrand	1	1	-inf
chr3	12272037	12272137	LINE	L1_Mus1	L1	chr3L1_Mus112271825	ProperStrand	1	chr3	12271733	12271823	LINE	L1_Mus3	L1	chr3L1_Mus312269731	ProperStrand	1	1	-inf
chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr13	74327012	74327038	protein_coding	Exoc3	intron	ENSMUSG00000034152	ProperStrand	24	1	-14.1270
chr10	56135091	56135181	SINE	B1F2	Alu	chr10B1F256135117	ProperStrand	1	chr10	56134976	56135076	SINE	ID_B1	B4	chr10ID_B156134845	ProperStrand	1	1	-inf
chr6	3201470	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	115802016	115802078	protein_coding	Sap30bp	intron	ENSMUSG00000020755	NonProperStrand	6	1	-7.4430
chr17	87264910	87265010	LINE	L1M2	L1	chr17L1M287264926	NonProperStrand	3	chr16	17038316	17038406	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	3	-inf
chr12	60373849	60373949	LINE	L1Md_T	L1	chr12L1Md_T60370812	NonProperStrand	1	chr2	169958768	169958858	protein_coding	Zfp217	intron	ENSMUSG00000052056	NonProperStrand	1	1	-inf
chr9	123462103	123462174	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	49104174	49104235	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	NonProperStrand	23	2	-4.9293
chr17	39847895	39847925	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	27539883	27539923	protein_coding	Rxra	intron	ENSMUSG00000015846	NonProperStrand	11	2	-3.4077
chr4	43492783	43492801	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr3	10324079	10328353	protein_coding	Impa1	exon	ENSMUSG00000027531	ProperStrand	11	1	-10.5417
chr1	146210891	146210911	LINE	L1Md_F3	L1	chr1L1Md_F3146207565	ProperStrand	1	chr17	39847440	39847538	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	86244695	86244797	Low_complexity	CT-rich	Low_complexity	chr12CT-rich86244666	ProperStrand	1	chr7	122768917	122768933	protein_coding	Sox6	intron	ENSMUSG00000051910	ProperStrand	19	1	-inf
chr17	39846955	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	109120338	109120425	SINE	RSINE1	B4	chr4RSINE1109120311	NonProperStrand	1	1	-inf
chr5	104775847	104775937	LINE	L1MDa	L1	chr5L1MDa104775138	ProperStrand	1	chrX	162811307	162811554	protein_coding	Gpm6b	intron	ENSMUSG00000031342	NonProperStrand	61	1	-inf
chr17	39843487	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr1	132621046	132621103	protein_coding	Pfkfb2	intron	ENSMUSG00000026409	ProperStrand	26	1	-4.0922
chr10	59603766	59603856	LTR	ORR1B2	MaLR	chr10ORR1B259603618	NonProperStrand	1	chr10	59603499	59603599	LTR	RMER15	ERVL	chr10RMER1559603423	NonProperStrand	1	1	-inf
chr15	77798824	77798900	protein_coding	Eif3d	intron	ENSMUSG00000016554	ProperStrand	79	chr1	16595639	16595677	protein_coding	Ube2w	intron	ENSMUSG00000025939	ProperStrand	15	1	-14.2931
chr1	177761216	177761306	LINE	L1M5	L1	chr1L1M5177761184	NonProperStrand	1	chr1	177761094	177761195	SINE	ID4_	ID	chr1ID4_177761104	NonProperStrand	1	1	-inf
chr19	4151377	4151430	protein_coding-noncoding	Coro1b	utr5	ENSMUSG00000024835	ProperStrand	1	chr19	4150738	4150825	protein_coding	Coro1b	exon	ENSMUSG00000024835	ProperStrand	30	1	-inf
chr13	5691372	5691462	LTR	ETnERV2-int	ERVK	chr13ETnERV2-int5691290	ProperStrand	2	chr13	5691197	5691297	LTR	MMETn-int	ERVK	chr13MMETn-int5689944	ProperStrand	1	1	-inf
chr13	112578187	112578287	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr10	79631304	79637507	protein_coding	1600002K03Rik	intron	ENSMUSG00000035595	NonProperStrand	1	1	-inf
chr7	12983668	12983685	LINE	Lx8	L1	chr7Lx812983443	ProperStrand	1	chr8	48463571	48463691	lincRNA	4930448N21Rik	intron	ENSMUSG00000086634	ProperStrand	141	1	-inf
chr18	53186573	53186673	LINE	L1Md_A	L1	chr18L1Md_A53185725	ProperStrand	1	chr12	41202612	41202702	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-inf
chr14	69695577	69695667	LINE	L1_Mus3	L1	chr14L1_Mus369695464	NonProperStrand	5	chr2	33036685	33036785	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-13.3801
chr4	155421792	155421869	protein_coding	Ttll10	intron	ENSMUSG00000029074	ProperStrand	2	chr6	95490208	95490247	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-17.6541
chr11	108276203	108276293	LINE	L2	L2	chr11L2108276149	ProperStrand	1	chr11	108276436	108276536	LTR	MTE-int	MaLR	chr11MTE-int108276458	ProperStrand	1	1	-inf
chr2	39569232	39569332	LTR	ORR1A0-int	MaLR	chr2ORR1A0-int39569259	ProperStrand	1	chr2	39568909	39568999	LTR	ORR1A0	MaLR	chr2ORR1A039568914	ProperStrand	1	1	-inf
chr1	185883051	185883069	protein_coding	Dusp10	intron	ENSMUSG00000039384	ProperStrand	3	chr4	119134432	119135771	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-14.0962
chr10	82955332	82955360	protein_coding	Aldh1l2	exon	ENSMUSG00000020256	ProperStrand	30	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-10.5376
chr9	21755704	21755794	SINE	B3	B2	chr9B321755686	ProperStrand	4	chr4	118201111	118201211	protein_coding	2610528J11Rik	intron	ENSMUSG00000028536	ProperStrand	1	1	-inf
chr16	37504428	37504476	DNA	MER33	MER1_type	chr16MER3337504287	ProperStrand	1	chr16	37506037	37506059	SINE	B1_Mus1	Alu	chr16B1_Mus137505962	ProperStrand	1	1	-inf
chr9	106429971	106430364	LINE	Lx8	L1	chr9Lx8106430222	NonProperStrand	4	chr18	34737553	34737643	protein_coding	Nme5	intron	ENSMUSG00000035984	ProperStrand	1	1	-inf
chr17	35013267	35013366	protein_coding	C2	utr5	ENSMUSG00000024371	NonProperStrand	158	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	2	-14.7046
chr15	78903637	78904297	SINE	B2_Mm2	B2	chr15B2_Mm278903606	ProperStrand	1	chrX	58038803	58038870	antisense	Gm14661	.	ENSMUSG00000067835	ProperStrand	56	1	-inf
chr17	47607005	47607030	protein_coding	AI661453	utr3	ENSMUSG00000034382	NonProperStrand	23	chr2	31496005	31496040	protein_coding	Prdm12	intron	ENSMUSG00000079466	ProperStrand	45	1	-14.5482
chr13	33565284	33567642	LINE	L1Md_T	L1	chr13L1Md_T33564621	NonProperStrand	1	chr11	88698026	88698133	protein_coding	Akap1	intron	ENSMUSG00000018428	ProperStrand	140	1	-inf
chr11	17221284	17221336	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr4	57215466	57215547	protein_coding	Ptpn3	intron	ENSMUSG00000038764	ProperStrand	95	1	-12.3073
chr6	38608281	38608358	DNA	URR1B	MER1_type	chr6URR1B38608121	ProperStrand	1	chr6	38608907	38608958	LTR	LTR89	ERVL?	chr6LTR8938608775	NonProperStrand	2	1	-inf
chr18	11902496	11902604	LTR	RLTR16	ERVK	chr18RLTR1611902474	NonProperStrand	1	chr18	11903223	11903244	LTR	RMER3D-int	ERVK	chr18RMER3D-int11902666	NonProperStrand	1	1	-inf
chr12	78350926	78351054	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr14	52089448	52089470	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-4.5679
chr13	23761043	23761099	LTR	RMER5	ERV1	chr13RMER523760834	NonProperStrand	13	chr17	39848099	39848165	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-4.1930
chr17	39847284	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	20939649	20939763	protein_coding-noncoding	Fam185a	utr5	ENSMUSG00000047221	NonProperStrand	4	1	-4.8204
chr4	42980486	42980536	LINE	L1_Rod	L1	chr4L1_Rod42980421	NonProperStrand	4	chr4	44807565	44807584	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-16.7681
chr2	34471796	34471855	protein_coding	Mapkap1	intron	ENSMUSG00000038696	ProperStrand	60	chr6	93738812	93738861	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-6.2848
chr5	125318161	125318245	protein_coding	Ccdc92	intron	ENSMUSG00000037979	ProperStrand	54	chr5	125312693	125312727	protein_coding	Dnahc10	intron	ENSMUSG00000038011	NonProperStrand	81	1	-11.6312
chr17	39847180	39847247	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	32194374	32194449	SINE	B1_Mur3	Alu	chr19B1_Mur332194299	NonProperStrand	1	1	-inf
chr2	110907286	110907376	LTR	RMER17A-int	ERVK	chr2RMER17A-int110907305	ProperStrand	2	chr2	110907605	110907705	LTR	RMER17A-int	ERVK	chr2RMER17A-int110907552	ProperStrand	2	2	-inf
chr2	139883846	139910586	LTR	MTB_Mm	MaLR	chr2MTB_Mm139910539	NonProperStrand	1	chr2	139857718	139883814	protein_coding	Tasp1	intron	ENSMUSG00000039033	ProperStrand	40	1	-inf
chr10	82883967	82884535	LINE	L1Md_T	L1	chr10L1Md_T82882458	NonProperStrand	6	chr10	82884560	82885040	LINE	L1Md_T	L1	chr10L1Md_T82884148	NonProperStrand	5	4	-inf
chr17	39847256	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	25069714	25069750	SINE	B3	B2	chr7B325069720	ProperStrand	1	1	-inf
chr8	87719286	87719354	LINE	Lx3_Mus	L1	chr8Lx3_Mus87719016	ProperStrand	1	chr4	57859308	57859398	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	1	-inf
chr14	55854411	55863020	LINE	Lx5	L1	chr14Lx555861554	NonProperStrand	8	chr14	55863094	55863194	LINE	Lx5	L1	chr14Lx555862846	NonProperStrand	11	6	-inf
chr7	130720182	130720282	DNA	MER20	MER1_type	chr7MER20130720169	ProperStrand	5	chr7	130720031	130720121	LINE	Lx5	L1	chr7Lx5130719935	ProperStrand	12	4	-inf
chr9	82941993	82942058	LTR	MTE2b	MaLR	chr9MTE2b82941796	ProperStrand	1	chr9	82941185	82941263	LTR	ORR1E	MaLR	chr9ORR1E82941095	NonProperStrand	1	1	-inf
chr6	15720825	15720912	protein_coding-noncoding	Mdfic	utr5	ENSMUSG00000041390	ProperStrand	1	chr9	123461823	123461877	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	100073426	100073488	LTR	MER21B	ERV1	chr13MER21B100072759	ProperStrand	1	chr14	52209845	52209894	pseudogene	Gm17174	.	ENSMUSG00000091036	ProperStrand	2	1	-inf
chr10	80202814	80202904	protein_coding	Ap3d1	intron	ENSMUSG00000020198	ProperStrand	1	chr10	122219302	122219402	protein_coding	Ppm1h	exon	ENSMUSG00000034613	NonProperStrand	4	1	-inf
chr2	22744860	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr8	95875844	95877735	protein_coding	Ces1h	utr3	ENSMUSG00000074156	ProperStrand	31	1	-8.1297
chr17	39847919	39848009	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	29986878	29988379	SINE	B2_Mm2	B2	chr2B2_Mm229986890	ProperStrand	1	1	-inf
chr5	146261282	146261314	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr16	23110476	23110512	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	10	1	-11.5340
chr19	54767350	54767450	LINE	Lx3_Mus	L1	chr19Lx3_Mus54766766	NonProperStrand	1	chr19	54767651	54767741	LTR	MLT1A1	MaLR	chr19MLT1A154767584	NonProperStrand	1	1	-inf
chr18	90176610	90176710	LTR	RLTR9A	ERVK	chr18RLTR9A90176445	ProperStrand	1	chr2	39740721	39740811	LTR	MYSERV6-int	ERVK	chr2MYSERV6-int39740074	NonProperStrand	1	1	-inf
chr14	99095252	99096768	LINE	Lx6	L1	chr14Lx699094743	NonProperStrand	3	chr14	99097608	99097698	SINE	ID4	ID	chr14ID499097620	NonProperStrand	3	3	-inf
chr17	39847550	39848077	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	134468396	134470705	protein_coding	Tmem50a	intron	ENSMUSG00000028822	NonProperStrand	19	3	-3.3580
chrX	102187948	102188311	LINE	L1Md_F2	L1	chrXL1Md_F2102187802	NonProperStrand	10	chr1	63588087	63588170	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-11.7184
chr7	63936868	63936894	LINE	L1Md_T	L1	chr7L1Md_T63934844	ProperStrand	27	chr2	180700331	180700369	antisense	Gm14341	.	ENSMUSG00000087293	NonProperStrand	32	1	-14.9036
chr17	4082109	4082994	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr5	146260994	146261101	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	3	-3.8302
chr9	108037921	108037945	protein_coding	Bsn	intron	ENSMUSG00000032589	NonProperStrand	80	chr14	20692948	20692995	protein_coding	Gng2	utr3	ENSMUSG00000043004	NonProperStrand	52	1	-11.7324
chr4	106851499	106851601	protein_coding	2210012G02Rik	utr5	ENSMUSG00000028619	ProperStrand	16	chr3	9501489	9501541	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-9.1575
chrX	118693787	118693887	LINE	L1Md_F2	L1	chrXL1Md_F2118693565	ProperStrand	1	chrX	118693477	118693567	LINE	Lx3_Mus	L1	chrXLx3_Mus118693196	NonProperStrand	1	1	-inf
chr8	110624403	110624477	SINE	ID_B1	B4	chr8ID_B1110624377	ProperStrand	1	chr1	191565572	191565595	protein_coding	Ptpn14	intron	ENSMUSG00000026604	NonProperStrand	26	1	-inf
chr15	29762449	29762549	LINE	Lx6	L1	chr15Lx629762392	ProperStrand	2	chr15	29762238	29762328	LINE	Lx7	L1	chr15Lx729761865	ProperStrand	2	2	-inf
chr10	110130043	110130143	Low_complexity	GA-rich	Low_complexity	chr10GA-rich110130027	NonProperStrand	1	chr10	110130383	110130473	SINE	ID4_	ID	chr10ID4_110130409	NonProperStrand	1	1	-inf
chr11	109011828	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	59896500	59896531	protein_coding	Snx30	intron	ENSMUSG00000028385	ProperStrand	123	1	-4.7032
chr13	29502394	29502422	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr13	46902021	46902051	protein_coding	Kif13a	intron	ENSMUSG00000021375	ProperStrand	101	1	-6.9133
chr19	23228196	23228245	protein_coding	Klf9	intron	ENSMUSG00000033863	NonProperStrand	6	chr17	56312929	56313061	protein_coding	Tnfaip8l1	utr3	ENSMUSG00000044469	ProperStrand	56	1	-16.9101
chr11	120187729	120187745	LTR	IAPEz-int	ERVK	chr11IAPEz-int120182724	NonProperStrand	5	chr17	39846427	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr12	33153944	33153991	LTR	MTC	MaLR	chr12MTC33153794	ProperStrand	2	chr9	123462034	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39846353	39846394	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	33301123	33301142	SINE	PB1D9	Alu	chr16PB1D933301079	NonProperStrand	1	1	-inf
chr8	22213518	22216559	LTR	RMER3D-int	ERVK	chr8RMER3D-int22215312	ProperStrand	1	chr8	22216561	22217209	LTR	RMER3D-int	ERVK	chr8RMER3D-int22216434	ProperStrand	2	1	-inf
chr1	165213191	165213227	protein_coding-noncoding	Prrx1	utr3	ENSMUSG00000026586	ProperStrand	3	chr9	119428245	119428291	protein_coding	Scn5a	intron	ENSMUSG00000032511	NonProperStrand	98	1	-17.4212
chr17	70987738	70987813	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr11	119712705	119712771	protein_coding	Rptor	exon	ENSMUSG00000025583	ProperStrand	231	1	-5.7732
chr17	39847515	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	97820033	97820135	SINE	B1_Mm	Alu	chr13B1_Mm97820057	NonProperStrand	4	1	-3.7035
chr4	141809483	141809510	LTR	MT2A	ERVL	chr4MT2A141809477	ProperStrand	2	chr4	141808772	141808901	LTR	ORR1D2	MaLR	chr4ORR1D2141808627	ProperStrand	2	2	-inf
chr17	39846458	39846495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	24972203	24972293	LTR	RLTR12B	ERVK	chr7RLTR12B24972007	NonProperStrand	2	1	-5.3533
chr17	39847207	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	27539805	27539930	protein_coding	Rxra	intron	ENSMUSG00000015846	NonProperStrand	11	2	-4.9635
chr2	177083160	177083252	LINE	L1Md_F2	L1	chr2L1Md_F2177082198	NonProperStrand	5	chr2	177083312	177083412	LINE	L1Md_F2	L1	chr2L1Md_F2177083296	ProperStrand	2	2	-inf
chr17	39847804	39847910	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	144648271	144648305	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n144648227	ProperStrand	1	1	-inf
chr10	78405664	78409140	LINE	L1Md_T	L1	chr10L1Md_T78403281	NonProperStrand	34	chr10	78409139	78410975	LINE	L1Md_T	L1	chr10L1Md_T78408709	NonProperStrand	4	3	-inf
chr8	106555280	106555376	LTR	RLTR18B	ERVK	chr8RLTR18B106555302	NonProperStrand	4	chr9	123461932	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr18	40792715	40792774	LTR	ORR1B2	MaLR	chr18ORR1B240792534	ProperStrand	6	chrX	93306288	93306357	protein_coding	Msn	intron	ENSMUSG00000031207	NonProperStrand	27	1	-18.5041
chr2	45347798	45347888	LINE	L1_Mus3	L1	chr2L1_Mus345347654	NonProperStrand	1	chr2	45348075	45348175	LINE	Lx9	L1	chr2Lx945348080	ProperStrand	1	1	-inf
chr1	136364889	136364965	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr12	109682383	109682448	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-6.1705
chr16	98063145	98063245	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	chr16	22991907	22991997	protein_coding	Kng2	intron	ENSMUSG00000060459	ProperStrand	2	1	-19.7109
chr8	120539104	120539194	LTR	RMER17B	ERVK	chr8RMER17B120538710	NonProperStrand	8	chr8	120539217	120539317	SINE	B1_Mus1	Alu	chr8B1_Mus1120539236	ProperStrand	2	2	-inf
chr2	22744874	22744918	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	21397485	21397588	protein_coding	1810026J23Rik	intron	ENSMUSG00000048429	ProperStrand	26	1	-8.4852
chr3	100953012	100953075	LTR	MLT1F	MaLR	chr3MLT1F100953007	ProperStrand	1	chr3	100953945	100953998	SINE	B1_Mur2	Alu	chr3B1_Mur2100953890	ProperStrand	5	1	-inf
chr17	39847183	39847212	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	83560314	83560404	SINE	B4A	B4	chr9B4A83560209	ProperStrand	1	1	-inf
chr3	122596123	122614306	lincRNA	4933405D12Rik	intron	ENSMUSG00000086397	ProperStrand	31	chr3	122616902	122616992	protein_coding	Gm10959	intron	ENSMUSG00000078590	ProperStrand	11	2	-inf
chr17	4082109	4082199	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr3	6478649	6478749	LINE	L1Md_A	L1	chr3L1Md_A6472312	ProperStrand	1	1	-inf
chr7	92044646	92044736	LINE	L1_Mur2	L1	chr7L1_Mur292044220	ProperStrand	1	chr7	92044896	92044996	LINE	Lx8	L1	chr7Lx892044811	NonProperStrand	1	1	-inf
chr2	42852472	42852490	LTR	MT2_Mm	ERVL	chr2MT2_Mm42852209	NonProperStrand	1	chr6	40061588	40061658	protein_coding	Gm5567	intron	ENSMUSG00000057716	ProperStrand	8	1	-inf
chr1	171123190	171125046	LTR	LTR40b	ERVL	chr1LTR40b171124933	NonProperStrand	1	chr5	136211989	136212092	protein_coding	Tmem120a	intron	ENSMUSG00000039886	NonProperStrand	5	1	-inf
chr15	79298400	79298509	Other	RMER1B	Other	chr15RMER1B79298390	NonProperStrand	1	chr9	41610529	41610547	SINE	ID2	ID	chr9ID241610477	ProperStrand	1	1	-inf
chr8	86882324	86882424	SINE	B1_Mur4	Alu	chr8B1_Mur486882282	ProperStrand	4	chr8	86882450	86882540	SINE	B2_Mm2	B2	chr8B2_Mm286882469	ProperStrand	2	2	-inf
chr6	67284543	67284633	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr12	21377235	21377335	protein_coding	Adam17	intron	ENSMUSG00000052593	NonProperStrand	2	1	-17.0182
chr10	8844446	8844511	LINE	L1M4	L1	chr10L1M48844195	NonProperStrand	1	chr17	39848055	39848074	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	146261141	146261177	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	46459844	46459936	protein_coding	Actr1a	intron	ENSMUSG00000025228	NonProperStrand	20	1	-7.2424
chr4	118162542	118162642	protein_coding	Tie1	utr5	ENSMUSG00000033191	ProperStrand	26	chr4	118164440	118164860	pseudogene	Gm12859	.	ENSMUSG00000080857	ProperStrand	1	1	-inf
chr15	63923343	63923394	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr9	88456387	88456440	protein_coding	Zfp949	intron	ENSMUSG00000032425	NonProperStrand	42	1	-9.3631
chr4	153722192	153722209	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	43	chr5	142414677	142414757	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-9.4297
chr15	80078501	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr5	121205067	121205144	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	2	-9.7148
chr17	39847049	39847149	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	111108423	111108513	SINE	B3A	B2	chr12B3A111108322	NonProperStrand	1	1	-inf
chr11	118353475	118353574	protein_coding	Rbfox3	utr3	ENSMUSG00000025576	ProperStrand	62	chr11	118349569	118349659	protein_coding	Engase	utr3	ENSMUSG00000033857	NonProperStrand	3	1	-18.3585
chr17	56313579	56313669	SINE	B1_Mm	Alu	chr17B1_Mm56313518	NonProperStrand	3	chr17	56313715	56313815	SINE	PB1	Alu	chr17PB156313676	NonProperStrand	1	1	-inf
chr10	17124520	17124543	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr17	39847440	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	21	-5.2682
chr12	99645564	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr16	57391176	57391624	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	2	-13.6538
chr15	60474533	60474550	LTR	RLTR14-int	ERV1	chr15RLTR14-int60474329	ProperStrand	1	mmu-miR-466i-5p	1	18	miRNA	mmu-miR-466i-5p	.	mmu-miR-466i-5p	NonProperStrand	3	1	-inf
chr17	39846703	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	78207886	78209111	SINE	RSINE1	B4	chr9RSINE178208488	NonProperStrand	1	1	-inf
chr14	69980510	69980582	protein_coding	Entpd4	intron	ENSMUSG00000022066	NonProperStrand	6	chr5	36465207	36465244	protein_coding	Sorcs2	intron	ENSMUSG00000029093	NonProperStrand	21	1	-19.2239
chr6	3201493	3201552	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	38538828	38538897	protein_coding	Nsg1	intron	ENSMUSG00000029126	ProperStrand	32	1	-4.0529
chr2	29501961	29502029	protein_coding	Rapgef1	intron	ENSMUSG00000039844	ProperStrand	77	chr7	142050959	142051017	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-9.5913
chr6	50434499	50434524	LTR	MTD-int	MaLR	chr6MTD-int50434454	ProperStrand	5	chr6	50434287	50434398	SINE	B1_Mur4	Alu	chr6B1_Mur450434316	ProperStrand	1	1	-inf
chr3	103178520	103178571	LINE	Lx5	L1	chr3Lx5103178409	NonProperStrand	2	chr17	39846752	39846802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr6	85930002	85930033	LINE	L1Md_F2	L1	chr6L1Md_F285929682	ProperStrand	1	chr17	13031104	13031199	antisense	Airn	.	ENSMUSG00000078247	ProperStrand	40	1	-inf
chr9	19657807	19657897	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr13	118751464	118751564	protein_coding	Hcn1	intron	ENSMUSG00000021730	NonProperStrand	12	1	-14.0360
chr17	39846759	39846832	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	155536187	155536253	LTR	RMER6A	ERVK	chr4RMER6A155536039	NonProperStrand	1	1	-inf
chr5	142992884	142993544	protein_coding	Radil	intron	ENSMUSG00000029576	ProperStrand	24	chr5	114851974	114852003	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-11.1565
chr2	130272432	130272532	SINE	B3A	B2	chr2B3A130272363	NonProperStrand	2	chr2	130272546	130272636	SINE	PB1D9	Alu	chr2PB1D9130272563	NonProperStrand	2	2	-inf
chr2	115710335	115710362	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	chr18	76305650	76305748	protein_coding	Zbtb7c	exon	ENSMUSG00000044646	ProperStrand	68	1	-9.8663
chr13	66984071	66984139	LINE	L1_Mus3	L1	chr13L1_Mus366982344	ProperStrand	1	chr17	39847037	39847102	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	180179935	180180142	LINE	L1MA9	L1	chr2L1MA9180179991	NonProperStrand	18	chr2	180179739	180179948	LINE	L1MB3	L1	chr2L1MB3180179649	ProperStrand	18	10	-20.6187
chr15	38297112	38297145	LTR	ORR1B1	MaLR	chr15ORR1B138296839	NonProperStrand	2	chr17	39848102	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr11	19977783	19977887	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	chr19	37195133	37195172	protein_coding	Cpeb3	intron	ENSMUSG00000039652	NonProperStrand	28	1	-11.2827
chr9	40804775	40804839	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr11	23362405	23362487	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-5.5929
chr11	23085742	23085842	LTR	RLTR1B	ERV1	chr11RLTR1B23085699	NonProperStrand	1	chr11	23085618	23085708	SINE	RSINE1	B4	chr11RSINE123085572	NonProperStrand	1	1	-inf
chr2	165868422	165868505	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	chr2	156532177	156532201	protein_coding	Dlgap4	intron	ENSMUSG00000061689	ProperStrand	127	1	-7.3305
chr1	167361522	167361820	protein_coding	Dcaf6	intron	ENSMUSG00000026571	NonProperStrand	57	chr1	128394816	128394890	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-9.3894
chr4	101072179	101072214	LINE	L1_Mur3	L1	chr4L1_Mur3101071479	ProperStrand	1	chr4	101072558	101072627	SINE	RSINE1	B4	chr4RSINE1101072466	NonProperStrand	1	1	-inf
chr10	81181119	81181342	SINE	B1_Mur2	Alu	chr10B1_Mur281181201	NonProperStrand	29	chr10	81181320	81182295	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	25	-20.2204
chr5	54723760	54723860	LINE	L1Md_F3	L1	chr5L1Md_F354722949	NonProperStrand	1	chr5	54724059	54724149	LINE	L1_Mus1	L1	chr5L1_Mus154723916	ProperStrand	1	1	-inf
chr7	139427089	139427186	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	chr7	139428288	139428321	protein_coding	Chst15	utr3	ENSMUSG00000030930	NonProperStrand	5	1	-13.3061
chr17	39846649	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	126664956	126670687	protein_coding	Acsm5	intron	ENSMUSG00000030972	ProperStrand	4	2	-6.6967
chr5	134946088	134946178	SINE	B1_Mm	Alu	chr5B1_Mm134946077	NonProperStrand	1	chr9	123461821	123461921	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	28951905	28951922	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	chr15	55633085	55633227	protein_coding	Sntb1	intron	ENSMUSG00000060429	NonProperStrand	31	1	-11.8833
chr11	115905561	115905620	protein_coding	Unk	intron	ENSMUSG00000020770	NonProperStrand	70	chr17	45569054	45569251	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-8.4907
chr17	39847727	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	91182083	91182145	SINE	MIR	MIR	chr10MIR91182034	NonProperStrand	2	1	-5.4040
chr7	143062872	143062928	LTR	ORR1E	MaLR	chr7ORR1E143062725	NonProperStrand	1	chr5	90254759	90258458	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	1	-inf
chr4	45379163	45379252	protein_coding	Dcaf10	intron	ENSMUSG00000035572	NonProperStrand	18	chr17	27198437	27198537	protein_coding	Itpr3	intron	ENSMUSG00000042644	NonProperStrand	33	1	-15.6835
chr11	109011821	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-3.3544
chr11	54270137	54270238	protein_coding	Fnip1	intron	ENSMUSG00000035992	ProperStrand	11	chr15	75836746	75836836	protein_coding	Fam83h	exon	ENSMUSG00000046761	ProperStrand	26	3	-inf
chr2	73012736	73012768	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr5	100538184	100538227	protein_coding	Tmem150c	intron	ENSMUSG00000050640	NonProperStrand	14	1	-14.5103
chr5	146261005	146261034	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	22256404	22256504	protein_coding	Tra2b	intron	ENSMUSG00000022858	ProperStrand	57	2	-8.4949
chr5	146260997	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	107035408	107035497	protein_coding	Nae1	intron	ENSMUSG00000031878	NonProperStrand	10	1	-8.6697
chr5	72251669	72251754	protein_coding	Gabrb1	intron	ENSMUSG00000029212	ProperStrand	56	chr11	107250453	107250484	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-8.8726
chrX	77527371	77527474	LINE	L1_Mus2	L1	chrXL1_Mus277523466	NonProperStrand	7	chr17	39847207	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr10	37195675	37195765	LINE	Lx4B	L1	chr10Lx4B37195400	NonProperStrand	1	chr10	37195990	37196090	LTR	IAPLTR2b	ERVK	chr10IAPLTR2b37196010	NonProperStrand	1	1	-inf
chr1	44156037	44156090	protein_coding	1700029F09Rik	intron	ENSMUSG00000026049	NonProperStrand	4	chr12	91558636	91558731	protein_coding	Nrxn3	intron	ENSMUSG00000066392	NonProperStrand	182	1	-15.4787
chr2	36429318	36429418	LINE	L1Md_F3	L1	chr2L1Md_F336427409	ProperStrand	1	chr2	36429710	36429800	LINE	L1Md_T	L1	chr2L1Md_T36429485	ProperStrand	1	1	-inf
chr2	30030368	30030581	protein_coding	D2Wsu81e	exon	ENSMUSG00000039660	NonProperStrand	9	chr2	30004533	30006644	protein_coding	Tbc1d13	utr3	ENSMUSG00000039678	ProperStrand	32	1	-17.1311
chr8	85042951	85043067	LTR	MLT1C	MaLR	chr8MLT1C85042889	ProperStrand	1	chr14	26656073	26656101	SINE	B2_Mm1t	B2	chr14B2_Mm1t26655995	NonProperStrand	1	1	-inf
chr5	146261278	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	2	-11.9973
chr9	92541435	92541451	Simple_repeat	(TTG)n	Simple_repeat	chr9(TTG)n92541410	NonProperStrand	1	chr1	36905152	36905272	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	1	-inf
chr17	78871171	78873944	LTR	IAPEz-int	ERVK	chr17IAPEz-int78870438	ProperStrand	2	chr17	78873944	78874034	LTR	IAPEz-int	ERVK	chr17IAPEz-int78871527	ProperStrand	4	2	-inf
chr15	77152901	77152991	SINE	B1_Mus1	Alu	chr15B1_Mus177152907	ProperStrand	1	chr15	77152780	77152880	SINE	B3	B2	chr15B377152687	ProperStrand	1	1	-inf
chr6	3201478	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr18	43370885	43371003	protein_coding	Stk32a	intron	ENSMUSG00000039954	NonProperStrand	11	1	-6.1647
chr5	33896626	33896716	LINE	L1M5	L1	chr5L1M533896627	ProperStrand	2	chr5	33896409	33896509	LTR	MTEa	MaLR	chr5MTEa33896437	NonProperStrand	2	2	-inf
chr5	67696369	67696490	LTR	RLTR19B	ERVK	chr5RLTR19B67696334	ProperStrand	1	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	80834416	80834464	protein_coding-noncoding	Sgsm3	utr5	ENSMUSG00000042303	ProperStrand	3	chr13	97190573	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr2	156166697	156166740	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	NonProperStrand	55	chr17	8379775	8379845	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	2	-inf
chr15	103388231	103388321	LINE	Lx6	L1	chr15Lx6103388246	ProperStrand	7	chr15	103388089	103388189	SINE	B2_Mm1t	B2	chr15B2_Mm1t103388065	ProperStrand	6	6	-inf
chr10	128679179	128679268	SINE	B3	B2	chr10B3128679187	ProperStrand	1	chr9	123462101	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	84102986	84104645	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	chr7	4808375	4808405	protein_coding	Isoc2b	intron	ENSMUSG00000052605	ProperStrand	64	1	-9.9498
chr3	90349407	90350397	LINE	Lx6	L1	chr3Lx690348904	NonProperStrand	5	chr3	90350403	90350503	SINE	B2_Mm2	B2	chr3B2_Mm290350328	NonProperStrand	5	5	-inf
chr4	132352451	132352482	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr2	34905111	34905132	protein_coding	Hc	intron	ENSMUSG00000026874	ProperStrand	22	1	-11.7853
chr15	85462408	85462925	SINE	B4A	B4	chr15B4A85462335	ProperStrand	2	chr14	21543822	21543876	protein_coding	Ndst2	intron	ENSMUSG00000039308	NonProperStrand	56	1	-19.4250
chr17	88002963	88008604	LINE	Lx8	L1	chr17Lx888007689	NonProperStrand	1	chr17	39847252	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr10	45632716	45632806	LINE	Lx7	L1	chr10Lx745632365	ProperStrand	2	chr10	45632819	45632919	LTR	RLTR20B3	ERVK	chr10RLTR20B345632799	NonProperStrand	2	2	-inf
chr6	48660205	48660224	DNA	Charlie12	MER1_type	chr6Charlie1248660150	NonProperStrand	1	chrX	103732771	103732790	LINE	L1_Mus4	L1	chrXL1_Mus4103732221	ProperStrand	1	1	-inf
chr11	69667290	69667318	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr15	7193519	7193577	protein_coding	Egflam	intron	ENSMUSG00000042961	NonProperStrand	61	1	-8.9837
chr17	39843821	39843898	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr19	34811329	34811348	protein_coding	Slc16a12	intron	ENSMUSG00000009378	ProperStrand	3	1	-9.1352
chr2	17956484	17956543	antisense	Gm13330	.	ENSMUSG00000085319	ProperStrand	1	chr5	122817933	122818854	protein_coding	1500011H22Rik	intron	ENSMUSG00000029463	ProperStrand	18	1	-inf
chr10	112948663	112948682	LTR	MT2C_Mm	ERVL	chr10MT2C_Mm112948434	ProperStrand	8	chr7	35036587	35036656	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	NonProperStrand	63	1	-16.0589
chr13	49661881	49661926	protein_coding	Aspn	exon	ENSMUSG00000021388	ProperStrand	7	chr9	123462098	123462117	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr13	85229918	85229945	LINE	Lx6	L1	chr13Lx685229742	NonProperStrand	1	chr13	85214421	85214502	LTR	MTD	MaLR	chr13MTD85214232	NonProperStrand	2	1	-inf
chr18	31649629	31649649	LINE	L1_Mus3	L1	chr18L1_Mus331649596	ProperStrand	1	chr18	31636051	31647066	LTR	RLTR9E	ERVK	chr18RLTR9E31635920	ProperStrand	6	1	-inf
chr17	74199042	74199075	LINE	L1_Mus3	L1	chr17L1_Mus374198806	NonProperStrand	1	chr9	121744376	121744487	protein_coding	Ccdc13	intron	ENSMUSG00000079235	NonProperStrand	17	1	-inf
chr14	120399618	120399728	LTR	RLTR22_Mur	ERVK	chr14RLTR22_Mur120399547	ProperStrand	5	chr2	5379293	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.6307
chr12	12712589	12712679	SINE	ID_B1	B4	chr12ID_B112712607	NonProperStrand	1	chr12	12712433	12712533	SINE	MIR	MIR	chr12MIR12712441	NonProperStrand	1	1	-inf
chr9	115005867	115005931	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	chr19	8888633	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	1	-8.0491
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	53488559	53488664	antisense	Gm16124	.	ENSMUSG00000086914	NonProperStrand	3	1	-4.3017
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr9	110076080	110076216	protein_coding	Smarcc1	intron	ENSMUSG00000032481	ProperStrand	174	1	-8.4656
chr10	78059668	78059694	LTR	RMER19B	ERVK	chr10RMER19B78058889	ProperStrand	3	chr10	78052716	78052741	protein_coding	Syde1	exon	ENSMUSG00000032714	NonProperStrand	32	1	-19.1201
chr11	104423004	104423104	processed_transcript	Gm11665	.	ENSMUSG00000086932	ProperStrand	17	chr11	104397103	104397193	protein_coding	Cdc27	intron	ENSMUSG00000020687	ProperStrand	27	1	-16.2030
chr11	63920236	63920336	LINE	L1M5	L1	chr11L1M563919889	ProperStrand	4	chr11	63920395	63920485	LINE	L1ME2	L1	chr11L1ME263920376	ProperStrand	6	2	-inf
chr5	139418089	139418157	LTR	MT2B	ERVL	chr5MT2B139417638	NonProperStrand	2	chr17	39843361	39843419	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr3	81400928	81400947	LINE	L1Md_F3	L1	chr3L1Md_F381400185	ProperStrand	1	chr6	3201504	3201533	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr13	113994180	113994329	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.1425
chr8	114565148	114565227	Other	RMER1C	Other	chr8RMER1C114564752	NonProperStrand	2	chr9	123461905	123461951	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr11	48800385	48800485	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr8	123914571	123915204	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-3.5791
chr4	53860719	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr8	94036784	94036855	protein_coding	Fto	intron	ENSMUSG00000055932	NonProperStrand	56	1	-9.5657
chr5	62762823	62762936	LINE	L1MA7	L1	chr5L1MA762762838	ProperStrand	1	chr1	122357187	122357235	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	1	-inf
chr11	101460399	101460465	antisense	Gm11634	.	ENSMUSG00000085486	ProperStrand	18	chr9	123462046	123462128	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.2529
chr7	46850305	46850910	LINE	L1_Mus1	L1	chr7L1_Mus146850082	ProperStrand	37	chr7	46854015	46854061	LTR	MTC	MaLR	chr7MTC46853906	NonProperStrand	44	1	-13.6277
chr11	35139535	35139568	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	chr11	117077373	117077396	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-7.0145
chr19	32151566	32151705	LINE	L1_Mur3	L1	chr19L1_Mur332150803	NonProperStrand	2	chr5	120643924	120643941	protein_coding	Rbm19	intron	ENSMUSG00000029594	NonProperStrand	36	1	-20.7183
chr2	5650447	5650547	LTR	MLT2B1	ERVL	chr2MLT2B15650175	NonProperStrand	4	chr2	5650607	5650697	SINE	B4A	B4	chr2B4A5650587	NonProperStrand	1	1	-inf
chr3	96270102	96270189	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr8	122642663	122642713	protein_coding	6430548M08Rik	intron	ENSMUSG00000031824	NonProperStrand	3	1	-19.5762
chr8	84952782	84952922	LINE	L1_Mus1	L1	chr8L1_Mus184951487	ProperStrand	1	chr17	39847041	39847145	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846640	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	138647297	138647314	protein_coding	Gm454	intron	ENSMUSG00000089783	NonProperStrand	1	1	-inf
chr9	71112271	71112288	protein_coding	Aldh1a2	intron	ENSMUSG00000013584	ProperStrand	4	chr9	59678054	59678182	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-11.9365
chr7	5110738	5110760	LINE	L1Md_T	L1	chr7L1Md_T5104752	NonProperStrand	3	chr5	146261141	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-11.3685
chr1	171503048	171503095	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr12	99645573	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	1	-13.1809
chr17	39846965	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	144857009	144857403	SINE	PB1D10	Alu	chr5PB1D10144857011	NonProperStrand	2	1	-5.3533
chr4	18207563	18207653	LINE	L1Md_F2	L1	chr4L1Md_F218204702	ProperStrand	1	chr4	18658348	18658448	processed_transcript	Gm11867	.	ENSMUSG00000087402	ProperStrand	17	1	-inf
chr13	42214351	42214369	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	54	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.0593
chr15	6794588	6794678	protein_coding	Osmr	intron	ENSMUSG00000022146	NonProperStrand	23	chr15	6789331	6789431	protein_coding	Osmr	intron	ENSMUSG00000022146	ProperStrand	3	1	-19.7792
chr3	16216681	16216732	LINE	L1Md_F3	L1	chr3L1Md_F316215572	NonProperStrand	4	chr9	3428716	3430449	protein_coding	Cwf19l2	exon	ENSMUSG00000025898	ProperStrand	36	1	-19.0696
chr3	109825341	109825431	protein_coding	Ntng1	intron	ENSMUSG00000059857	NonProperStrand	14	chr3	109695258	109695358	protein_coding	Ntng1	intron	ENSMUSG00000059857	ProperStrand	10	1	-18.4132
chr1	150732947	150733037	LINE	Lx4B	L1	chr1Lx4B150732587	NonProperStrand	2	chr1	150740623	150740723	LTR	RLTR10B	ERVK	chr1RLTR10B150740504	ProperStrand	1	1	-inf
chr6	72435977	72436230	LTR	RodERV21-int	ERV1	chr6RodERV21-int72435939	ProperStrand	1	chr11	105229748	105229783	lincRNA	Gm11638	intron	ENSMUSG00000086487	ProperStrand	21	1	-inf
chr15	89500318	89500359	LTR	MTD	MaLR	chr15MTD89500000	NonProperStrand	1	chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	53860727	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr7	127272489	127272569	protein_coding	Zp2	intron	ENSMUSG00000030911	ProperStrand	28	1	-10.9664
chr2	164474022	164474112	LINE	L1Md_F3	L1	chr2L1Md_F3164473666	ProperStrand	1	chr2	164474145	164474245	SINE	B4A	B4	chr2B4A164474106	ProperStrand	1	1	-inf
chr7	13024904	13024973	LINE	L1_Mus1	L1	chr7L1_Mus113018915	NonProperStrand	76	chr2	5379267	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0989
chr12	112589238	112614907	protein_coding	Cdc42bpb	intron	ENSMUSG00000021279	NonProperStrand	38	chr9	123461940	123462040	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.5608
chr17	39847274	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	120874924	120875023	LTR	MTB	MaLR	chr7MTB120874850	NonProperStrand	1	1	-inf
chr1	150652755	150652846	LTR	MER57C2	ERV1	chr1MER57C2150652736	NonProperStrand	1	chr1	150652310	150652410	SINE	B4	B4	chr1B4150652243	NonProperStrand	1	1	-inf
chr13	22043358	22043392	protein_coding	Zfp184	intron	ENSMUSG00000006720	ProperStrand	13	chr9	123461835	123461925	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr17	39846954	39847009	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	118904789	118904834	LTR	RMER13A	ERVK	chr1RMER13A118904799	ProperStrand	5	1	-3.1907
chr10	80054217	80054327	SINE	B3	B2	chr10B380054145	NonProperStrand	8	chr10	80053999	80054122	SINE	RSINE1	B4	chr10RSINE180053956	NonProperStrand	7	4	-inf
chr12	19953745	19953835	LTR	RLTR10	ERVK	chr12RLTR1019953715	ProperStrand	1	chr12	19175573	19175673	SINE	B1_Mus1	Alu	chr12B1_Mus119175554	ProperStrand	1	1	-inf
chr17	36002494	36002554	antisense	5530401N12Rik	.	ENSMUSG00000087443	NonProperStrand	2	chr17	36000059	36000143	protein_coding	Nrm	intron	ENSMUSG00000059791	ProperStrand	10	1	-20.4467
chr13	9700239	9700339	protein_coding	Zmynd11	intron	ENSMUSG00000021156	ProperStrand	40	chr4	147059051	147059141	protein_coding	Zfp534	intron	ENSMUSG00000062518	NonProperStrand	13	3	-inf
chr8	84201465	84201504	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr15	83149662	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-4.8752
chr17	39847175	39847310	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	83375359	83375377	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n83375276	NonProperStrand	7	1	-3.6430
chr10	121551321	121552208	LINE	L1Md_A	L1	chr10L1Md_A121544518	ProperStrand	2	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-15.3042
chr17	39846722	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	135381723	135381741	protein_coding	Wbscr28	intron	ENSMUSG00000040576	NonProperStrand	2	1	-5.3533
chr3	137646701	137646791	SINE	B3	B2	chr3B3137646640	NonProperStrand	1	chr3	137647125	137647225	SINE	B4A	B4	chr3B4A137647092	NonProperStrand	1	1	-inf
chr2	22744853	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr14	73826352	73826369	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n73826340	ProperStrand	4	1	-12.4656
chr11	106501242	106501371	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	28	chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-11.9959
chr3	60748546	60748636	LINE	Lx8	L1	chr3Lx860748117	ProperStrand	1	chr3	60748701	60748801	LINE	Lx8	L1	chr3Lx860748667	ProperStrand	1	1	-inf
chrX	75229272	75229295	LINE	Lx2	L1	chrXLx275228960	NonProperStrand	1	chr7	133035663	133035747	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr16	96195493	96195522	LTR	LTRIS_Mus	ERV1	chr16LTRIS_Mus96195496	NonProperStrand	1	chr16	96200781	96200827	LTR	ORR1A2	MaLR	chr16ORR1A296200496	NonProperStrand	1	1	-inf
chr11	97781663	97781691	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.3249
chr11	107062778	107065998	LTR	MTD	MaLR	chr11MTD107065803	NonProperStrand	8	chr11	107065996	107066092	SINE	B3A	B2	chr11B3A107065997	NonProperStrand	9	8	-inf
chr3	85993670	85993697	LINE	L1MB7	L1	chr3L1MB785993093	ProperStrand	2	chr3	85994101	85994229	SINE	B3A	B2	chr3B3A85994036	ProperStrand	1	1	-inf
chr2	164836477	164837031	protein_coding	Ncoa5	intron	ENSMUSG00000039804	NonProperStrand	18	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-11.0673
chr8	25826529	25826605	protein_coding	Adam3	intron	ENSMUSG00000031553	ProperStrand	67	chr11	44524933	44525019	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	1	-10.3266
chr6	92092503	92092548	protein_coding	Nr2c2	intron	ENSMUSG00000005893	ProperStrand	51	chr3	40702871	40702934	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	1	-13.6870
chr4	133038384	133038443	antisense	Gm13257	.	ENSMUSG00000086850	ProperStrand	1	chr4	133038447	133038511	protein_coding	Fam46b	intron	ENSMUSG00000046694	NonProperStrand	1	1	-inf
chr17	39846747	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	83728686	83728706	protein_coding	Ttk	intron	ENSMUSG00000038379	ProperStrand	1	1	-inf
chr4	150452058	150452108	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr16	31838136	31838218	protein_coding	Dlg1	exon	ENSMUSG00000022770	ProperStrand	104	1	-7.1263
chr17	70963741	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	85610045	85610142	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-3.7711
chr12	13229120	13229279	protein_coding	Ddx1	intron	ENSMUSG00000037149	ProperStrand	27	chr17	27917718	27917790	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	NonProperStrand	106	1	-12.4943
chr5	149050403	149050650	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	chr6	142971231	142971321	protein_coding	5730419I09Rik	intron	ENSMUSG00000030279	ProperStrand	75	1	-10.5877
chr2	30033069	30033169	protein_coding-noncoding	D2Wsu81e	utr3	ENSMUSG00000039660	ProperStrand	5	chr2	30033183	30033273	protein_coding	D2Wsu81e	utr5	ENSMUSG00000039660	ProperStrand	11	5	-inf
chr17	70963742	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	33553448	33553542	protein_coding	Slc12a8	intron	ENSMUSG00000035506	ProperStrand	102	1	-5.1695
chr18	75002108	75002735	LTR	ORR1E	MaLR	chr18ORR1E75002647	ProperStrand	7	chr4	118268446	118268516	protein_coding	Wdr65	exon	ENSMUSG00000028730	ProperStrand	288	1	-13.3050
chr4	16436156	16436256	lincRNA	Gm11861	intron	ENSMUSG00000086072	NonProperStrand	4	chr10	122565791	122565881	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-18.3525
chr14	68002277	68002367	protein_coding	Ebf2	intron	ENSMUSG00000022053	ProperStrand	8	chr14	64435606	64435706	protein_coding	Xkr6	intron	ENSMUSG00000035067	NonProperStrand	62	1	-16.1100
chr19	7336210	7336310	LTR	MTD	MaLR	chr19MTD7336083	ProperStrand	4	chr19	7336350	7336440	SINE	B1_Mus1	Alu	chr19B1_Mus17336343	NonProperStrand	2	2	-inf
chr9	119308644	119308690	DNA	Tigger7	MER2_type	chr9Tigger7119308625	ProperStrand	1	chr9	119308452	119308563	SINE	B3A	B2	chr9B3A119308455	NonProperStrand	1	1	-inf
chr9	65800055	65800155	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	NonProperStrand	105	chr9	65800154	65800244	snoRNA	ENSMUSG00000077385_SNORA17	.	ENSMUSG00000077385	ProperStrand	2	2	-inf
chr5	104001597	104001673	protein_coding	Ptpn13	intron	ENSMUSG00000034573	NonProperStrand	46	chr6	119936553	119937403	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	1	-12.3364
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	22038728	22038781	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-5.7434
chr11	8448713	8450085	protein_coding-noncoding	Tns3	utr3	ENSMUSG00000020422	ProperStrand	4	chr2	60321746	60321763	protein_coding	Pla2r1	intron	ENSMUSG00000054580	NonProperStrand	8	1	-inf
chr13	97810122	97810226	LTR	MERVL-int	ERVL	chr13MERVL-int97807330	NonProperStrand	5	chr16	55998372	55998408	protein_coding	Rpl24	intron	ENSMUSG00000022601	ProperStrand	72	1	-16.8112
chr4	129327704	129327806	protein_coding	Kpna6	intron	ENSMUSG00000003731	ProperStrand	20	chr7	64373608	64373624	protein_coding	Gabrg3	intron	ENSMUSG00000055026	NonProperStrand	33	1	-15.4780
chr19	46063919	46064590	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	NonProperStrand	78	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-7.6595
chr16	19221842	19221923	LINE	L1Md_F3	L1	chr16L1Md_F319219536	ProperStrand	1	chr4	43492784	43492852	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-inf
chr9	62042995	62043095	LINE	L1ME3A	L1	chr9L1ME3A62042823	NonProperStrand	1	chr9	62042590	62042680	SINE	B1_Mm	Alu	chr9B1_Mm62042564	ProperStrand	1	1	-inf
chr1	42864952	42865042	LTR	MTEa	MaLR	chr1MTEa42864900	ProperStrand	2	chr5	125067312	125067412	protein_coding-noncoding	Tctn2	utr5	ENSMUSG00000029386	NonProperStrand	5	2	-inf
chr15	53219293	53219375	SINE	B3A	B2	chr15B3A53219249	NonProperStrand	1	chr1	82379595	82379640	protein_coding	Rhbdd1	intron	ENSMUSG00000026142	ProperStrand	165	1	-inf
chr3	79898465	79898523	LINE	L1_Mus1	L1	chr3L1_Mus179898168	ProperStrand	1	chr3	79897932	79897980	LTR	MTD	MaLR	chr3MTD79897938	ProperStrand	1	1	-inf
chr14	75847906	75847966	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr6	28821620	28821670	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-7.9181
chr13	23751486	23751591	LINE	Lx8	L1	chr13Lx823751469	NonProperStrand	4	chr13	97190585	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr4	129542615	129542632	SINE	B4	B4	chr4B4129542601	ProperStrand	1	chr2	31681231	31681305	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	1	-inf
chr1	34053745	34053763	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chrX	100574308	100574335	protein_coding	Chic1	intron	ENSMUSG00000031327	NonProperStrand	2	1	-14.2323
chr8	109875061	109875123	protein_coding	Nfat5	intron	ENSMUSG00000003847	ProperStrand	41	chr16	15942005	15942092	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	1	-11.6097
chr9	17987800	17987836	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr1	87784668	87784694	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n87784642	ProperStrand	2	1	-18.4551
chr1	88264107	88264224	lincRNA	C130036L24Rik	exon	ENSMUSG00000073627	NonProperStrand	67	chr13	97190561	97190597	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.9086
chr17	39843392	39843443	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr10	7589329	7589370	protein_coding	Zc3h12d	utr3	ENSMUSG00000039981	NonProperStrand	3	1	-8.6612
chr5	88675131	88675208	LINE	L1Md_A	L1	chr5L1Md_A88673153	ProperStrand	2	chr9	123461882	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr15	57869691	57869757	LINE	L2c	L2	chr15L2c57869673	NonProperStrand	1	chr15	57870173	57870202	LTR	ORR1E	MaLR	chr15ORR1E57869972	NonProperStrand	1	1	-inf
chr17	39846759	39846841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	81161175	81161243	Unknown	MurSatRep1	Unknown	chr10MurSatRep181161087	NonProperStrand	1	1	-inf
chr4	41119540	41119779	protein_coding	Ube2r2	intron	ENSMUSG00000036241	NonProperStrand	66	chr4	41119813	41119870	snRNA	ENSMUSG00000087730_U6	.	ENSMUSG00000087730	ProperStrand	1	1	-inf
chr10	128560101	128560163	LINE	L1_Mur3	L1	chr10L1_Mur3128560039	NonProperStrand	2	chr5	146261157	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-12.4657
chr6	3201509	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	46202795	46202877	SINE	B4A	B4	chr17B4A46202709	NonProperStrand	4	1	-8.3508
chr4	69494579	69494669	DNA	URR1A	MER1_type	chr4URR1A69494464	ProperStrand	1	chr4	69494778	69494878	LINE	Lx	L1	chr4Lx69494732	ProperStrand	1	1	-inf
chr10	54029004	54029104	LINE	L1M3	L1	chr10L1M354028891	NonProperStrand	1	chr10	54028762	54028852	SINE	B3	B2	chr10B354028656	NonProperStrand	1	1	-inf
chr2	67909253	67909283	LINE	L1Md_F2	L1	chr2L1Md_F267909128	NonProperStrand	2	chr13	97490102	97490215	Other	RMER1A	Other	chr13RMER1A97489989	ProperStrand	17	1	-20.8675
chr19	8724468	8725046	SINE	B2_Mm2	B2	chr19B2_Mm28724598	NonProperStrand	3	chr9	123461882	123461907	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr2	150332719	150332772	LINE	L1Md_T	L1	chr2L1Md_T150329272	ProperStrand	2	chr11	88343398	88343504	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-13.7007
chr13	51777710	51777810	protein_coding-noncoding	Secisbp2	utr5	ENSMUSG00000035139	NonProperStrand	1	chr13	51777810	51777900	protein_coding	Secisbp2	exon	ENSMUSG00000035139	NonProperStrand	64	1	-inf
chr2	157774590	157779819	LTR	MTC	MaLR	chr2MTC157774557	NonProperStrand	1	chr2	3410873	3410891	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-inf
chr4	131870049	131870087	protein_coding	Trnau1ap	intron	ENSMUSG00000028898	ProperStrand	4	chr5	66394855	66394919	protein_coding	9130230L23Rik	intron	ENSMUSG00000054598	ProperStrand	75	1	-17.2979
chr13	44869595	44869684	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr9	65201724	65201770	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-3.5895
chr17	39843037	39843072	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr2	84624271	84624387	LTR	LTR53	ERVL	chr2LTR5384624198	NonProperStrand	5	1	-10.5017
chr17	39847702	39847801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	151912514	151912534	SINE	B1_Mus1	Alu	chr1B1_Mus1151912492	ProperStrand	4	1	-3.7035
chr1	63240606	63240638	protein_coding	Gpr1	intron	ENSMUSG00000046856	NonProperStrand	66	chr5	27281400	27281472	protein_coding	Dpp6	intron	ENSMUSG00000061576	ProperStrand	96	1	-10.8858
chr11	94664171	94664261	SINE	B1_Mm	Alu	chr11B1_Mm94664180	NonProperStrand	2	chr11	94664062	94664162	SINE	B1_Mus2	Alu	chr11B1_Mus294664073	NonProperStrand	2	2	-inf
chr8	25269894	25269984	Other	RMER1A	Other	chr8RMER1A25269491	NonProperStrand	1	chr8	25269351	25269451	Other	RMER1B	Other	chr8RMER1B25269025	NonProperStrand	1	1	-inf
chr10	42512597	42512623	protein_coding	Sec63	intron	ENSMUSG00000019802	ProperStrand	36	chrX	134361139	134361190	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-11.2011
chr8	47767388	47767488	LINE	L1M6	L1	chr8L1M647767388	ProperStrand	1	chr8	28602560	28602650	protein_coding	Poteg	intron	ENSMUSG00000063932	ProperStrand	1	1	-inf
chr2	56237227	56237327	LINE	L1MB1	L1	chr2L1MB156237118	NonProperStrand	1	chr2	56236533	56236623	LINE	Lx3B	L1	chr2Lx3B56236128	ProperStrand	1	1	-inf
chr1	171503046	171503160	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr1	20898128	20898160	protein_coding	Paqr8	intron	ENSMUSG00000025931	ProperStrand	6	1	-18.0106
chr9	123461821	123461848	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	80504420	80504437	protein_coding	Gria2	intron	ENSMUSG00000033981	NonProperStrand	6	1	-5.4370
chr17	39846585	39846646	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	4885423	4885501	protein_coding	Heatr7b2	intron	ENSMUSG00000022155	ProperStrand	3	1	-4.3017
chr14	19278154	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr6	128445161	128445232	protein_coding	Pzp	intron	ENSMUSG00000030359	NonProperStrand	26	1	-13.2412
chr4	147565541	147565641	SINE	B3	B2	chr4B3147565442	NonProperStrand	3	chr4	147565702	147565792	SINE	B3	B2	chr4B3147565665	NonProperStrand	3	3	-inf
chr15	62207277	62207367	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr4	32370167	32370220	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	1	-4.8841
chr11	109011813	109011858	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	132531160	132531195	protein_coding	Fgr	intron	ENSMUSG00000028874	NonProperStrand	17	1	-8.6328
chr3	9380905	9381005	LINE	Lx	L1	chr3Lx9380473	ProperStrand	2	chr17	39848197	39848287	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr3	131302849	131302866	protein_coding	Papss1	intron	ENSMUSG00000028032	ProperStrand	3	chr9	100542642	100542763	protein_coding	Stag1	intron	ENSMUSG00000037286	NonProperStrand	21	1	-19.5588
chr18	30405223	30405323	LTR	MTD	MaLR	chr18MTD30405224	ProperStrand	2	chr18	30405081	30405171	LTR	ORR1D1	MaLR	chr18ORR1D130404866	NonProperStrand	2	2	-inf
chr7	112732907	112732997	LTR	ORR1D1	MaLR	chr7ORR1D1112732820	NonProperStrand	1	chr7	112733002	112733102	SINE	B1_Mus1	Alu	chr7B1_Mus1112733011	ProperStrand	1	1	-inf
chr2	20850364	20854971	protein_coding	Arhgap21	intron	ENSMUSG00000036591	ProperStrand	30	chr2	20850241	20850341	sense_intronic	Gm13380	.	ENSMUSG00000085206	ProperStrand	14	2	-20.5831
chr8	105528781	105528844	LINE	L1_Mus1	L1	chr8L1_Mus1105528497	NonProperStrand	1	chr3	107314632	107314719	protein_coding	Slc6a17	intron	ENSMUSG00000027894	ProperStrand	46	1	-inf
chr4	120892468	120892572	SINE	ID_B1	B4	chr4ID_B1120892436	NonProperStrand	2	chr4	120892572	120892615	Simple_repeat	(TCCC)n	Simple_repeat	chr4(TCCC)n120892558	ProperStrand	3	2	-inf
chr5	34699943	34699971	SINE	B4A	B4	chr5B4A34699948	NonProperStrand	1	chr16	35332484	35332563	protein_coding	Sec22a	intron	ENSMUSG00000034473	ProperStrand	38	1	-inf
chr17	39848199	39848254	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	30095796	30095841	LTR	RMER3D-int	ERVK	chr19RMER3D-int30095626	NonProperStrand	3	1	-7.3534
chr7	33592777	33592867	LINE	L1M2	L1	chr7L1M233592597	NonProperStrand	1	chr7	33592491	33592591	LTR	RLTR33	ERVK	chr7RLTR3333592089	NonProperStrand	1	1	-inf
chr19	29624189	29624289	protein_coding	C030046E11Rik	intron	ENSMUSG00000038658	NonProperStrand	23	chr19	29623565	29623655	protein_coding	C030046E11Rik	intron	ENSMUSG00000038658	ProperStrand	14	1	-16.8672
chr19	45780643	45780732	LTR	IAPLTR1a_Mm	ERVK	chr19IAPLTR1a_Mm45780377	NonProperStrand	1	chr7	133024938	133024974	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr8	83574402	83574485	LINE	Lx3_Mus	L1	chr8Lx3_Mus83571406	ProperStrand	29	chr8	83575083	83575122	LINE	Lx3_Mus	L1	chr8Lx3_Mus83575047	ProperStrand	7	1	-17.7985
chr10	56293988	56294088	LINE	Lx2	L1	chr10Lx256293541	NonProperStrand	1	chr10	56294109	56294199	SINE	B1_Mus1	Alu	chr10B1_Mus156294108	NonProperStrand	1	1	-inf
chr17	92647482	92647582	LINE	L1Md_A	L1	chr17L1Md_A92647476	NonProperStrand	1	chr17	92647359	92647449	LTR	ORR1A3-int	MaLR	chr17ORR1A3-int92647019	ProperStrand	1	1	-inf
chr19	5800833	5800925	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr18	14804557	14804620	protein_coding	Ss18	intron	ENSMUSG00000037013	NonProperStrand	28	1	-5.9254
chr16	91577132	91577213	protein_coding	Tmem50b	intron	ENSMUSG00000022964	ProperStrand	8	chr5	100898965	100898982	protein_coding	Lin54	intron	ENSMUSG00000035310	ProperStrand	2	1	-inf
chr7	126498248	126499167	LTR	ORR1E	MaLR	chr7ORR1E126498225	NonProperStrand	6	chr13	74331338	74331423	protein_coding	Exoc3	intron	ENSMUSG00000034152	ProperStrand	24	1	-18.9659
chr10	40258556	40258599	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr8	61763214	61763233	LINE	Lx8	L1	chr8Lx861762759	ProperStrand	3	1	-11.6731
chr15	99705738	99707370	LTR	MER57D	ERV1	chr15MER57D99707249	NonProperStrand	2	chr17	39847277	39847332	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39848599	39848635	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr19	38837300	38837386	protein_coding	Plce1	intron	ENSMUSG00000024998	ProperStrand	13	1	-4.4576
chr14	115592596	115592696	protein_coding	Gpc5	intron	ENSMUSG00000022112	ProperStrand	42	chr14	122754122	122754212	protein_coding	Clybl	intron	ENSMUSG00000025545	NonProperStrand	8	1	-16.9044
chr14	25699804	25699904	LINE	L1MD	L1	chr14L1MD25699812	NonProperStrand	9	chr14	25699714	25699804	SINE	PB1D10	Alu	chr14PB1D1025699699	NonProperStrand	1	1	-inf
chr19	17400320	17400366	SINE	B1F2	Alu	chr19B1F217400332	NonProperStrand	1	chr12	79750395	79750463	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr17	50420135	50420163	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-5.2049
chr15	73303895	73304420	LTR	ORR1D2	MaLR	chr15ORR1D273304249	ProperStrand	1	chr2	20803782	20803887	protein_coding	Arhgap21	intron	ENSMUSG00000036591	NonProperStrand	34	1	-inf
chr13	119397767	119397827	LINE	Lx8	L1	chr13Lx8119397382	ProperStrand	1	chr13	119398064	119398130	LTR	RMER17D	ERVK	chr13RMER17D119398077	NonProperStrand	1	1	-inf
chr7	101858685	101859100	LINE	L1Md_F2	L1	chr7L1Md_F2101856533	NonProperStrand	1	chr10	79864189	79864222	LTR	ORR1A4	MaLR	chr10ORR1A479864146	ProperStrand	2	1	-inf
chr17	39848131	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	95099987	95100103	protein_coding	Fam63a	utr3	ENSMUSG00000038712	NonProperStrand	16	1	-3.7913
chrX	113126113	113126213	LINE	Lx	L1	chrXLx113125712	ProperStrand	2	chr5	30060673	30060763	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	2	-inf
chr6	128358154	128359132	protein_coding	Nrip2	utr3	ENSMUSG00000001520	NonProperStrand	12	chr9	123461802	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr9	110281287	110281333	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr9	108391675	108391711	protein_coding	Lamb2	intron	ENSMUSG00000052911	ProperStrand	3	1	-13.9209
chr11	57523668	57523740	protein_coding	Galnt10	intron	ENSMUSG00000020520	ProperStrand	49	chr16	48289344	48289374	protein_coding	Dppa4	intron	ENSMUSG00000058550	ProperStrand	20	1	-14.6666
chr14	8501922	8501948	LINE	L1_Mus3	L1	chr14L1_Mus38501591	NonProperStrand	1	chr15	99603005	99603021	antisense	Gm17058	.	ENSMUSG00000090406	NonProperStrand	10	1	-inf
chr7	128442586	128443833	LINE	Lx8	L1	chr7Lx8128442592	ProperStrand	3	chr7	128443937	128444361	SINE	B4A	B4	chr7B4A128444221	ProperStrand	3	2	-20.2273
chr17	39843024	39843069	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr16	23112321	23112376	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-3.3908
chr4	129221299	129221362	SINE	B1_Mm	Alu	chr4B1_Mm129221243	NonProperStrand	2	chr9	123461832	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr11	61427868	61427887	LINE	Lx7	L1	chr11Lx761427784	ProperStrand	8	chr9	123461931	123461976	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr5	134621492	134621533	SINE	B3	B2	chr5B3134621333	NonProperStrand	4	chr5	134620077	134620095	protein_coding	Gatsl2	utr3	ENSMUSG00000015944	NonProperStrand	5	1	-inf
chr8	109162128	109162154	protein_coding	Cdh1	intron	ENSMUSG00000000303	ProperStrand	54	chr10	93453587	93453648	protein_coding	Vezt	intron	ENSMUSG00000036099	NonProperStrand	24	1	-14.0931
chr12	24911577	24911702	DNA	MER63C	AcHobo	chr12MER63C24911563	ProperStrand	3	chr12	24906503	24906532	Simple_repeat	(TTG)n	Simple_repeat	chr12(TTG)n24906490	ProperStrand	3	3	-inf
chr18	44383587	44383641	LINE	Lx5	L1	chr18Lx544383557	NonProperStrand	1	chr18	44383501	44383575	LTR	MTA_Mm	MaLR	chr18MTA_Mm44383136	ProperStrand	1	1	-inf
chr17	39847077	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	63049923	63049942	protein_coding	Arap2	intron	ENSMUSG00000037999	NonProperStrand	9	2	-5.5822
chr13	29970101	29970143	LTR	MT2A	ERVL	chr13MT2A29970092	ProperStrand	13	chr3	9505915	9505947	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-9.5865
chr5	31469517	31469617	protein_coding-noncoding	Gtf3c2	utr3	ENSMUSG00000029144	NonProperStrand	1	chr5	31469357	31469447	protein_coding	Gtf3c2	intron	ENSMUSG00000029144	NonProperStrand	26	1	-inf
chr17	39843362	39846662	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	13641690	13641707	protein_coding	Rasa3	intron	ENSMUSG00000031453	NonProperStrand	7	1	-6.7356
chrX	8004223	8004249	LINE	L1Md_T	L1	chrXL1Md_T8004112	ProperStrand	1	chr17	39847736	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	9950552	9950649	protein_coding	Taf3	intron	ENSMUSG00000025782	ProperStrand	59	chr17	26195730	26195746	protein_coding	Rab11fip3	intron	ENSMUSG00000037098	NonProperStrand	45	1	-12.6376
chr9	11256531	11256548	LINE	L1_Mus3	L1	chr9L1_Mus311255801	ProperStrand	1	chr16	43739722	43739842	LTR	RLTR13C2	ERVK	chr16RLTR13C243739334	ProperStrand	1	1	-inf
chr18	90596795	90596862	LINE	L1Md_T	L1	chr18L1Md_T90593455	NonProperStrand	2	chr19	3563323	3563390	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	1	-16.9384
chr17	39847243	39847293	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	89189443	89189483	protein_coding	Ncaph2	intron	ENSMUSG00000008690	NonProperStrand	5	1	-4.3348
chr15	85401878	85401952	protein_coding	Wnt7b	intron	ENSMUSG00000022382	NonProperStrand	94	chr9	110943229	110944205	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-10.0155
chr6	3201430	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	81824050	81824127	protein_coding	Xrcc6	intron	ENSMUSG00000022471	ProperStrand	10	1	-6.3611
chr2	92214839	92214926	protein_coding-noncoding	Pex16	utr5	ENSMUSG00000027222	ProperStrand	1	chr12	31628297	31628340	protein_coding	Sh3yl1	intron	ENSMUSG00000020669	NonProperStrand	18	1	-inf
chr1	143320542	143320642	LINE	Lx2	L1	chr1Lx2143320334	ProperStrand	1	chr1	143320664	143320754	LINE	Lx2	L1	chr1Lx2143320664	NonProperStrand	1	1	-inf
chr17	39847636	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	13577924	13578072	protein_coding	Tram1	intron	ENSMUSG00000025935	ProperStrand	10	2	-3.6759
chrX	74272549	74272620	SINE	B3	B2	chrXB374272477	ProperStrand	15	chr9	56223578	56223656	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-11.3129
chr4	72192846	72192892	LINE	L1_Mur3	L1	chr4L1_Mur372191748	ProperStrand	2	chr17	39846885	39846941	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	74397451	74405769	SINE	B3	B2	chr11B374405615	NonProperStrand	1	chr11	74395892	74397451	protein_coding	Rap1gap2	intron	ENSMUSG00000038807	ProperStrand	11	1	-inf
chr12	114082658	114082748	LINE	Lx6	L1	chr12Lx6114082608	NonProperStrand	1	chr12	114082798	114082898	LTR	MTD	MaLR	chr12MTD114082782	NonProperStrand	1	1	-inf
chr12	109588849	109588948	protein_coding	Cyp46a1	intron	ENSMUSG00000021259	ProperStrand	108	chr15	80082391	80082420	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	1	-6.9183
chr17	39847863	39848064	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	99603003	99603021	antisense	Gm17058	.	ENSMUSG00000090406	NonProperStrand	10	2	-3.6759
chr4	138732534	138732568	antisense	Gm16287	.	ENSMUSG00000073739	NonProperStrand	1	chr1	131573826	131573870	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-inf
chr10	25494235	25494262	LINE	L1_Mm	L1	chr10L1_Mm25493380	NonProperStrand	4	chr10	25492841	25492877	LINE	Lx	L1	chr10Lx25492302	NonProperStrand	1	1	-inf
chr18	42229844	42230012	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	NonProperStrand	45	chr9	37534351	37534550	protein_coding	Olfr151	intron	ENSMUSG00000061165	ProperStrand	5	1	-17.8204
chr2	170532219	170532314	LINE	Lx8	L1	chr2Lx8170531934	NonProperStrand	4	chr17	39848021	39848065	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	4	-inf
chr7	84333808	84333880	SINE	B4A	B4	chr7B4A84333794	ProperStrand	1	chr9	123461957	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	157765204	157765300	protein_coding	Vstm2l	intron	ENSMUSG00000037843	ProperStrand	46	chr8	125196193	125196245	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-7.4622
chr17	39846453	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	100023999	100024016	SINE	RSINE1	B4	chr11RSINE1100024000	NonProperStrand	1	1	-inf
chr3	74561063	74561144	LINE	L1_Mur2	L1	chr3L1_Mur274560741	ProperStrand	1	chr9	70022681	70022716	lincRNA	Gm17406	intron	ENSMUSG00000091654	NonProperStrand	7	1	-inf
chr6	59478760	59478850	LINE	L1VL1	L1	chr6L1VL159476187	NonProperStrand	1	chr6	59479021	59479121	LINE	L1_Mus1	L1	chr6L1_Mus159478938	NonProperStrand	1	1	-inf
chr17	39846889	39846952	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	89968560	89968633	LTR	MTD	MaLR	chr7MTD89968523	NonProperStrand	1	1	-inf
chr14	78654711	78654740	LTR	MLT1J-int	MaLR	chr14MLT1J-int78653775	ProperStrand	1	chr16	56107587	56107626	protein_coding	Senp7	intron	ENSMUSG00000052917	NonProperStrand	16	1	-inf
chr17	39846951	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	86098529	86099216	SINE	ID_B1	B4	chr17ID_B186098437	ProperStrand	1	1	-inf
chr17	39847608	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	32086799	32086894	protein_coding	Pigx	intron	ENSMUSG00000023791	ProperStrand	9	2	-3.9821
chr5	36560150	36560250	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	chr5	32567738	32567828	protein_coding	Plb1	intron	ENSMUSG00000029134	NonProperStrand	6	1	-14.4370
chr10	80116413	80116475	protein_coding	Btbd2	intron	ENSMUSG00000003344	NonProperStrand	29	chr2	5379307	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.9680
chr1	53746853	53746953	LINE	L1_Mus2	L1	chr1L1_Mus253746159	NonProperStrand	1	chr1	53747051	53747141	LINE	L1_Mus2	L1	chr1L1_Mus253746986	NonProperStrand	1	1	-inf
chr17	93520742	93520795	LTR	RNLTR23	ERVK	chr17RNLTR2393520618	NonProperStrand	1	chr7	103550744	103550776	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-inf
chr14	63910191	63910291	LTR	MurERV4-int	ERVK	chr14MurERV4-int63910219	ProperStrand	2	chr14	63910076	63910166	LTR	RMER4A	ERVK	chr14RMER4A63910073	ProperStrand	1	1	-inf
chr5	146261171	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	19758559	19758697	SINE	MIRc	MIR	chr7MIRc19758621	ProperStrand	1	1	-inf
chr8	69794289	69794363	LTR	MYSERV6-int	ERVK	chr8MYSERV6-int69794113	NonProperStrand	1	chr8	60662025	60662091	lincRNA	Gm17517	intron	ENSMUSG00000091944	ProperStrand	4	1	-inf
chr15	85177759	85177778	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr1	131457493	131457609	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-6.4729
chr3	19774229	19774329	LINE	L1VL2	L1	chr3L1VL219773910	NonProperStrand	1	chr3	19774399	19774489	LINE	L1VL2	L1	chr3L1VL219774408	NonProperStrand	1	1	-inf
chr6	28827993	28828027	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr2	23036147	23036191	protein_coding	Yme1l1	intron	ENSMUSG00000026775	NonProperStrand	28	1	-8.0573
chr17	39847107	39847287	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	83500276	83500376	protein_coding	Stambp	intron	ENSMUSG00000006906	ProperStrand	9	1	-3.1539
chr8	77238490	77238590	lincRNA	Gm11033	intron	ENSMUSG00000079011	NonProperStrand	16	chr18	57547047	57547137	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	19	1	-17.0151
chr17	39847759	39847861	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	21391412	21395009	SINE	B2_Mm1a	B2	chr12B2_Mm1a21394857	NonProperStrand	1	1	-inf
chr6	49258707	49258807	LTR	MT2A	ERVL	chr6MT2A49258732	NonProperStrand	2	chr6	49258811	49258901	SINE	B1_Mur4	Alu	chr6B1_Mur449258821	NonProperStrand	3	2	-inf
chr17	39842998	39843056	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr11	116430469	116430569	protein_coding	Ube2o	intron	ENSMUSG00000020802	NonProperStrand	55	1	-5.5562
chr18	77780150	77780227	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr18	34955417	34955484	protein_coding	Kdm3b	intron	ENSMUSG00000038773	ProperStrand	8	1	-13.9482
chr6	3201508	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	59044952	59044983	SINE	MIRb	MIR	chr15MIRb59044933	NonProperStrand	1	1	-inf
chr10	83488442	83488536	DNA	RCHARR1	MER1_type	chr10RCHARR183488179	NonProperStrand	1	chr10	83488827	83488890	LINE	Lx8	L1	chr10Lx883488630	NonProperStrand	2	1	-inf
chr8	114535683	114535735	protein_coding	Terf2ip	exon	ENSMUSG00000033430	ProperStrand	50	chr13	44869619	44869661	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.8431
chr9	18639294	18639384	LINE	Lx2B	L1	chr9Lx2B18639211	NonProperStrand	2	chr9	18639101	18639201	LTR	RLTR46	ERVK	chr9RLTR4618638895	ProperStrand	2	2	-inf
chr17	39846588	39846649	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	44999174	44999245	LTR	RLTR23	ERV1	chr8RLTR2344998979	ProperStrand	1	1	-inf
chr4	96047552	96047642	LINE	L1_Mur2	L1	chr4L1_Mur296047405	NonProperStrand	1	chr4	96047850	96047950	LTR	RLTRETN_Mm	ERVK	chr4RLTRETN_Mm96047734	NonProperStrand	1	1	-inf
chr1	158291804	158291894	LINE	L1Md_F3	L1	chr1L1Md_F3158287184	ProperStrand	2	chr1	158445706	158445806	LTR	MYSERV6-int	ERVK	chr1MYSERV6-int158444958	NonProperStrand	1	1	-inf
chr2	64073555	64073623	SINE	B3	B2	chr2B364073417	ProperStrand	1	chr11	29391516	29391574	protein_coding	Ccdc88a	intron	ENSMUSG00000032740	ProperStrand	17	1	-inf
chr12	75801775	75801838	LTR	IAPLTR2_Mm	ERVK	chr12IAPLTR2_Mm75801665	ProperStrand	1	chr2	158357257	158357320	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-inf
chr5	115474518	115474534	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr2	3410873	3410892	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-11.1853
chr8	72566872	72566889	protein_coding	Sugp1	utr5	ENSMUSG00000011306	ProperStrand	15	chr10	40294178	40294279	protein_coding	Slc22a16	intron	ENSMUSG00000019834	NonProperStrand	68	1	-14.5926
chr1	152371187	152371272	LINE	L1Md_T	L1	chr1L1Md_T152370856	ProperStrand	2	chr6	3201493	3201568	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr1	82890280	82890372	protein_coding	Agfg1	intron	ENSMUSG00000026159	ProperStrand	65	chr1	63051504	63051547	protein_coding	Ino80d	intron	ENSMUSG00000040865	ProperStrand	58	1	-11.9301
chr7	133771274	133771382	LINE	Lx7	L1	chr7Lx7133771203	ProperStrand	1	chr7	133768107	133768141	protein_coding	Nupr1	intron	ENSMUSG00000030717	ProperStrand	1	1	-inf
chr4	127573746	127573836	DNA	Tigger1	MER2_type	chr4Tigger1127572857	ProperStrand	1	chr4	127574018	127574118	LINE	L1_Mur3	L1	chr4L1_Mur3127573972	ProperStrand	1	1	-inf
chr4	40739535	40739587	LINE	L1M5	L1	chr4L1M540739518	NonProperStrand	1	chr17	39848181	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr16	18403675	18403848	protein_coding-noncoding	Arvcf	utr5	ENSMUSG00000000325	ProperStrand	1	chrX	23825126	23825145	pseudogene	Gm4732	.	ENSMUSG00000083099	NonProperStrand	3	1	-inf
chr17	39847160	39847189	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	91358649	91358698	LTR	ORR1D2	MaLR	chr8ORR1D291358322	NonProperStrand	1	1	-inf
chr12	85269943	85270033	SINE	ID_B1	B4	chr12ID_B185269927	NonProperStrand	1	chr12	78350927	78350986	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr6	71432233	71432333	DNA	URR1A	MER1_type	chr6URR1A71432255	NonProperStrand	3	chr6	71432655	71432745	LTR	MLT1F2	MaLR	chr6MLT1F271432581	ProperStrand	1	1	-inf
chr9	108425903	108425921	protein_coding	Qrich1	intron	ENSMUSG00000006673	ProperStrand	11	chr9	40804747	40804839	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-10.8918
chr17	39846677	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	139442754	139443419	LTR	ORR1D1	MaLR	chr4ORR1D1139442740	ProperStrand	3	1	-4.3017
chr12	24922272	24922317	SINE	B2_Mm2	B2	chr12B2_Mm224922215	NonProperStrand	1	chr17	28613852	28613940	protein_coding	Fkbp5	intron	ENSMUSG00000024222	ProperStrand	81	1	-inf
chr6	72749385	72749455	SINE	B1_Mus2	Alu	chr6B1_Mus272749396	NonProperStrand	1	chr6	72754387	72754439	SINE	B4A	B4	chr6B4A72754181	ProperStrand	7	1	-inf
chr9	47656873	47656918	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	chr16	32334597	32334701	protein_coding	Ubxn7	intron	ENSMUSG00000053774	ProperStrand	53	1	-9.7603
chr1	58504365	58504418	protein_coding	Nif3l1	utr5	ENSMUSG00000026036	NonProperStrand	4	chr7	116196564	116196635	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-16.5489
chr13	49348199	49348254	LTR	MLT1A1-int	MaLR	chr13MLT1A1-int49348199	NonProperStrand	1	chr13	49347869	49347949	LTR	RMER15	ERVL	chr13RMER1549347671	ProperStrand	4	1	-inf
chr5	76156584	76156674	LINE	L1Md_F3	L1	chr5L1Md_F376156586	NonProperStrand	2	chr5	76156678	76156778	LINE	L1_Mm	L1	chr5L1_Mm76156703	NonProperStrand	2	2	-inf
chr17	39847636	39847689	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	31220336	31220422	protein_coding	Emilin1	exon	ENSMUSG00000029163	NonProperStrand	3	1	-4.3512
chr17	39846650	39846723	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	89105480	89105515	LTR	RLTR18	ERVK	chr18RLTR1889105467	ProperStrand	1	1	-inf
chr11	60012615	60012705	protein_coding	Srebf1	utr3	ENSMUSG00000020538	ProperStrand	8	chr11	60012443	60012543	protein_coding	Rai1	utr3	ENSMUSG00000062115	NonProperStrand	26	2	-inf
chr18	15347060	15347078	LINE	L1Md_A	L1	chr18L1Md_A15344878	NonProperStrand	3	chr17	39847611	39847693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr6	3201456	3201559	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr1	4867503	4867519	protein_coding	Lypla1	intron	ENSMUSG00000025903	ProperStrand	29	1	-4.2407
chr1	39799042	39799132	LINE	Lx9	L1	chr1Lx939798859	ProperStrand	1	chr1	39799569	39799669	LTR	ORR1B1	MaLR	chr1ORR1B139799499	NonProperStrand	1	1	-inf
chrX	122686206	122686306	LINE	Lx2B	L1	chrXLx2B122685774	ProperStrand	1	chrX	122686571	122686661	LINE	Lx2B	L1	chrXLx2B122686372	NonProperStrand	1	1	-inf
chr17	39847244	39847287	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	3630716	3630769	protein_coding	Pex1	intron	ENSMUSG00000005907	NonProperStrand	5	1	-4.3348
chr17	4082147	4082264	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr14	124415481	124415980	protein_coding	Fgf14	intron	ENSMUSG00000025551	NonProperStrand	12	2	-17.3428
chr17	39847440	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	96317968	96317985	SINE	B2_Mm2	B2	chr16B2_Mm296317907	NonProperStrand	1	1	-inf
chr16	83344404	83344494	LINE	L1_Mus3	L1	chr16L1_Mus383344174	NonProperStrand	1	chr16	83344648	83344748	Low_complexity	GA-rich	Low_complexity	chr16GA-rich83344669	ProperStrand	1	1	-inf
chrX	128826103	128826203	LTR	HERVL40-int	ERVL	chrXHERVL40-int128826096	ProperStrand	1	chrX	128826462	128826552	LTR	LTR40b	ERVL	chrXLTR40b128826296	ProperStrand	1	1	-inf
chr11	61427868	61427885	LINE	Lx7	L1	chr11Lx761427784	ProperStrand	8	chr5	3755291	3755396	protein_coding	Ankib1	intron	ENSMUSG00000040351	ProperStrand	49	1	-16.5916
chr16	84860580	84860670	protein_coding	Gabpa	utr3	ENSMUSG00000008976	ProperStrand	42	chr2	132532815	132532915	protein_coding	1110034G24Rik	intron	ENSMUSG00000044991	NonProperStrand	9	1	-16.6695
chr7	16346825	16346943	SINE	B1_Mm	Alu	chr7B1_Mm16346828	ProperStrand	1	chr1	172505279	172505305	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	1	-inf
chr6	3201470	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	58450389	58450424	protein_coding	Lpar1	exon	ENSMUSG00000038668	ProperStrand	26	1	-4.4507
chr1	168359472	168359572	SINE	RSINE1	B4	chr1RSINE1168359440	NonProperStrand	1	chr1	168359567	168359657	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n168359553	NonProperStrand	2	1	-inf
chr6	3201437	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	4632549	4633108	protein_coding	Hspbp1	intron	ENSMUSG00000063802	ProperStrand	7	1	-7.1107
chr7	118109974	118114792	protein_coding	Mrvi1	intron	ENSMUSG00000005611	NonProperStrand	2	chr9	86503164	86503210	protein_coding	Me1	intron	ENSMUSG00000032418	NonProperStrand	24	1	-20.2563
chr13	62222026	62222071	SINE	B1_Mus1	Alu	chr13B1_Mus162222018	NonProperStrand	6	chr13	62221923	62222027	Simple_repeat	(TTTC)n	Simple_repeat	chr13(TTTC)n62221847	ProperStrand	1	1	-inf
chr10	41524334	41524434	protein_coding	Cep57l1	intron	ENSMUSG00000019813	NonProperStrand	53	chr10	41569064	41569154	protein_coding	Sesn1	intron	ENSMUSG00000038332	ProperStrand	16	2	-inf
chr2	130741913	130748777	protein_coding	Atrn	intron	ENSMUSG00000027312	NonProperStrand	36	chr15	101939892	101939909	protein_coding	Tenc1	intron	ENSMUSG00000037003	NonProperStrand	1	1	-inf
chr15	76064777	76064949	protein_coding-noncoding	Parp10	utr3	ENSMUSG00000063268	ProperStrand	1	chr15	76064533	76064728	protein_coding	Parp10	intron	ENSMUSG00000063268	ProperStrand	64	1	-inf
chr5	146261253	146261280	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr6	33420521	33420627	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-6.1717
chr6	115665428	115665492	LINE	Lx5	L1	chr6Lx5115665221	ProperStrand	1	chr17	39846352	39846411	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	81327700	81327790	Simple_repeat	(CAGC)n	Simple_repeat	chr7(CAGC)n81327703	NonProperStrand	3	chr11	88547643	88547743	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	3	-inf
chrX	52546303	52546379	LINE	L1VL4	L1	chrXL1VL452546309	NonProperStrand	2	chr9	123462072	123462140	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr16	35035609	35035667	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	chr11	80406066	80406114	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	1	-8.8671
chr11	84909443	84909460	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr9	108085431	108085557	protein_coding	Bsn	intron	ENSMUSG00000032589	ProperStrand	35	1	-13.4813
chr3	153396740	153396830	SINE	B3	B2	chr3B3153396742	ProperStrand	1	chr3	153396628	153396728	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n153396624	NonProperStrand	1	1	-inf
chr7	87095564	87095652	SINE	RSINE1	B4	chr7RSINE187095489	ProperStrand	1	chr9	123462153	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	100364523	100364580	LINE	L1_Rod	L1	chr5L1_Rod100364355	NonProperStrand	2	chr5	100364275	100364322	SINE	B1_Mus2	Alu	chr5B1_Mus2100364189	NonProperStrand	2	2	-inf
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr16	15626245	15627665	protein_coding	Mcm4	exon	ENSMUSG00000022673	ProperStrand	19	1	-14.7648
chr17	39847440	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	122028818	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	6	-4.2668
chr1	60181394	60181459	protein_coding	Carf	intron	ENSMUSG00000026017	ProperStrand	8	chr1	60254912	60254987	protein_coding	Nbeal1	intron	ENSMUSG00000073664	ProperStrand	53	1	-16.4167
chr17	39846816	39847175	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	93421851	93421867	LTR	MTE2a	MaLR	chr2MTE2a93421498	ProperStrand	6	2	-5.1926
chr8	67867121	67867203	LINE	L1Md_T	L1	chr8L1Md_T67865898	NonProperStrand	1	chr2	5379271	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	39847636	39847724	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	152321529	152321578	Other	RMER1B	Other	chr2RMER1B152321457	ProperStrand	2	1	-5.4040
chr13	11859765	11859864	protein_coding	Ryr2	intron	ENSMUSG00000021313	ProperStrand	81	chr16	17261514	17261534	protein_coding	Hic2	utr3	ENSMUSG00000050240	ProperStrand	111	1	-10.1834
chr17	39847026	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	39908531	39908552	protein_coding	Olfr984	exon	ENSMUSG00000045812	ProperStrand	1	1	-inf
chr5	110785737	110785872	LTR	RLTR20B3	ERVK	chr5RLTR20B3110785731	NonProperStrand	9	chr5	110785834	110785990	Simple_repeat	(GAA)n	Simple_repeat	chr5(GAA)n110785856	NonProperStrand	15	9	-inf
chr4	126689127	126689221	LTR	IAPEz-int	ERVK	chr4IAPEz-int126686119	ProperStrand	6	chr1	137234512	137234575	protein_coding	Lmod1	intron	ENSMUSG00000048096	ProperStrand	4	1	-inf
chr19	8972938	8978172	protein_coding	Ganab	intron	ENSMUSG00000071650	ProperStrand	138	chr19	8969215	8969948	protein_coding	Ints5	exon	ENSMUSG00000071652	ProperStrand	72	4	-inf
chr17	12731687	12731713	LINE	Lx6	L1	chr17Lx612731622	ProperStrand	2	chr17	39847847	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr6	97247509	97247525	protein_coding	Frmd4b	intron	ENSMUSG00000030064	ProperStrand	32	chr6	88308006	88308101	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	1	-10.1757
chr13	66890082	66890102	LTR	ORR1B1-int	MaLR	chr13ORR1B1-int66888779	NonProperStrand	1	chr16	84967753	84967828	protein_coding	App	intron	ENSMUSG00000022892	ProperStrand	60	1	-inf
chr13	59528377	59528461	LINE	L1M4c	L1	chr13L1M4c59527915	NonProperStrand	1	chr17	39846932	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	87238369	87238399	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr7	111077312	111077437	protein_coding	Olfr631	exon	ENSMUSG00000042219	NonProperStrand	91	1	-8.6480
chr17	39843774	39843827	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr9	114598638	114598681	protein_coding	Dync1li1	intron	ENSMUSG00000032435	NonProperStrand	39	1	-3.7688
chr19	3288990	3289080	protein_coding	Mrpl21	exon	ENSMUSG00000024829	ProperStrand	11	chr9	57483681	57483782	protein_coding	Csk	intron	ENSMUSG00000032312	NonProperStrand	3	1	-inf
chr17	80658427	80658536	protein_coding	Dhx57	intron	ENSMUSG00000035051	ProperStrand	50	chr11	117204253	117204272	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-10.5373
chr8	64758667	64758686	LINE	Lx2B	L1	chr8Lx2B64757536	NonProperStrand	14	chr8	64815995	64816098	LINE	Lx6	L1	chr8Lx664815263	ProperStrand	3	1	-20.8283
chr1	180874918	180875019	LTR	MTD	MaLR	chr1MTD180874780	ProperStrand	1	chr1	180870277	180870302	LTR	RMER19B	ERVK	chr1RMER19B180870260	NonProperStrand	2	1	-inf
chr7	127972161	127972227	SINE	B1_Mur2	Alu	chr7B1_Mur2127972095	NonProperStrand	3	chr10	69935488	69935510	protein_coding	Fam13c	intron	ENSMUSG00000043259	ProperStrand	75	1	-17.9855
chr3	98339716	98339806	LINE	L1_Mm	L1	chr3L1_Mm98339264	ProperStrand	5	chr8	71348330	71348430	protein_coding	Ints10	intron	ENSMUSG00000031864	ProperStrand	49	1	-17.7075
chr16	15548639	15548658	LINE	L1_Mur3	L1	chr16L1_Mur315547560	ProperStrand	1	chr11	68334561	68334590	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-inf
chr5	145259249	145259349	SINE	B2_Mm2	B2	chr5B2_Mm2145259234	NonProperStrand	1	chr5	145259087	145259177	SINE	RSINE1	B4	chr5RSINE1145259087	NonProperStrand	2	1	-inf
chr11	62604516	62604564	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr18	20763948	20764006	antisense	Gm16090	.	ENSMUSG00000085595	NonProperStrand	35	1	-13.9327
chr18	6443824	6443893	protein_coding	Epc1	intron	ENSMUSG00000024240	ProperStrand	56	chr11	72386139	72386202	pseudogene	Gm12712	.	ENSMUSG00000081675	ProperStrand	1	1	-inf
chr3	51458749	51459961	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n51459911	ProperStrand	1	chr16	15568086	15568149	protein_coding	Ube2v2	intron	ENSMUSG00000022674	ProperStrand	16	1	-inf
chr19	7021673	7021768	protein_coding	Bad	intron	ENSMUSG00000024959	NonProperStrand	24	chr2	121450801	121450862	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	1	-13.3277
chr6	51466995	51467241	LTR	MT2A	ERVL	chr6MT2A51466966	NonProperStrand	10	chr6	51466367	51466401	LTR	RLTR33	ERVK	chr6RLTR3351465765	NonProperStrand	8	1	-19.7993
chr4	149120031	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr18	84262565	84262703	protein_coding	Zadh2	intron	ENSMUSG00000049090	NonProperStrand	21	1	-8.6792
chr13	34901558	34901593	LTR	ORR1B1	MaLR	chr13ORR1B134901507	ProperStrand	2	chr17	39846580	39846646	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39847073	39847467	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	34549626	34549647	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	25	-12.3366
chr17	39846411	39847056	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	115123811	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	6	-7.0283
chr10	128717758	128717828	LINE	L1Md_F3	L1	chr10L1Md_F3128716103	NonProperStrand	2	chr17	39847233	39847267	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr2	118600644	118600744	protein_coding	Phgr1	intron	ENSMUSG00000046804	ProperStrand	9	chr2	120873634	120873723	protein_coding	Tgm5	intron	ENSMUSG00000053675	NonProperStrand	1	1	-inf
chr1	88277087	88277115	SINE	B2_Mm2	B2	chr1B2_Mm288276966	NonProperStrand	1	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-inf
chr14	50833939	50834029	LINE	Lx7	L1	chr14Lx750833841	ProperStrand	4	chr14	50833479	50833925	Simple_repeat	(CATATA)n	Simple_repeat	chr14(CATATA)n50833256	NonProperStrand	4	4	-inf
chr17	39846461	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	145424346	145424380	LTR	ETnERV2-int	ERVK	chr4ETnERV2-int145424040	NonProperStrand	1	1	-inf
chr1	57444946	57445036	LTR	MLT1L	MaLR	chr1MLT1L57444920	ProperStrand	1	chr1	57445124	57445224	protein_coding	1110034B05Rik	utr3	ENSMUSG00000048495	NonProperStrand	2	1	-inf
chr11	97668414	97668503	protein_coding-noncoding	Lasp1	utr5	ENSMUSG00000038366	ProperStrand	1	chr5	148315308	148315324	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-inf
chr3	117761943	117762033	LINE	L1Md_T	L1	chr3L1Md_T117760478	ProperStrand	1	chr3	117762043	117762143	LINE	L1Md_T	L1	chr3L1Md_T117761966	ProperStrand	1	1	-inf
chr1	182021335	182021467	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	ProperStrand	17	chr2	48932061	48932077	protein_coding	Mbd5	intron	ENSMUSG00000036792	ProperStrand	50	1	-14.9580
chr18	77778526	77778566	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr5	77283113	77283143	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	1	-7.5697
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr11	47336924	47337005	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	49	1	-10.2154
chr17	39847009	39847037	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	93718993	93719110	SINE	RSINE1	B4	chr2RSINE193718942	NonProperStrand	1	1	-inf
chr2	37694340	37694413	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	chr9	108540698	108540782	protein_coding	Arih2	intron	ENSMUSG00000064145	NonProperStrand	62	1	-8.5141
chr4	67303375	67303475	LINE	Lx3B	L1	chr4Lx3B67300485	ProperStrand	1	chr4	67303505	67303595	LINE	Lx3B	L1	chr4Lx3B67303401	ProperStrand	1	1	-inf
chr3	133085002	133091656	LTR	RMER6B	ERVK	chr3RMER6B133091434	ProperStrand	2	chr3	133091669	133091759	LTR	RMER6B	ERVK	chr3RMER6B133091561	ProperStrand	5	2	-inf
chrX	136780862	136780948	lincRNA	Gm15046	intron	ENSMUSG00000086441	NonProperStrand	41	chr2	174259791	174259867	protein_coding	Ctsz	intron	ENSMUSG00000016256	ProperStrand	3	1	-19.6634
chr17	39847195	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	62774032	62774071	protein_coding	Nrp2	intron	ENSMUSG00000025969	NonProperStrand	5	1	-4.3348
chr8	3613423	3613485	protein_coding	Xab2	exon	ENSMUSG00000019470	ProperStrand	13	chr19	6510517	6510610	protein_coding	Nrxn2	intron	ENSMUSG00000033768	NonProperStrand	22	1	-17.2387
chr16	35203766	35203866	protein_coding	Adcy5	intron	ENSMUSG00000022840	ProperStrand	4	chr16	35706970	35707060	protein_coding	Dirc2	intron	ENSMUSG00000022848	NonProperStrand	2	1	-20.9262
chr16	35804734	35804812	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	chr19	8888621	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	1	-8.0595
chr1	92905883	92905983	protein_coding	Lrrfip1	intron	ENSMUSG00000026305	NonProperStrand	18	chr2	34196963	34197053	protein_coding	Pbx3	intron	ENSMUSG00000038718	ProperStrand	18	2	-20.6153
chr11	20685264	20685365	LTR	RLTR47_MM	ERV1	chr11RLTR47_MM20685032	ProperStrand	1	chr5	132022226	132022249	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-inf
chr11	60785594	60785684	LINE	L1Md_F2	L1	chr11L1Md_F260785606	ProperStrand	3	chr11	60785494	60785594	LTR	MTC	MaLR	chr11MTC60785421	ProperStrand	3	3	-inf
chr11	45853318	45853408	DNA	MER45A	Tip100	chr11MER45A45853311	NonProperStrand	1	chr11	45853414	45853514	SINE	RSINE1	B4	chr11RSINE145853389	ProperStrand	1	1	-inf
chr13	62032335	62032457	Unknown	MurSatRep1	Unknown	chr13MurSatRep162031819	ProperStrand	2	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-16.0837
chr15	38193668	38193768	LINE	L1MB8	L1	chr15L1MB838193644	ProperStrand	1	chr15	38193800	38193890	SINE	B1F	Alu	chr15B1F38193812	ProperStrand	1	1	-inf
chr4	153420839	153420929	LINE	L1MEf	L1	chr4L1MEf153420808	NonProperStrand	1	chr4	153421067	153421167	LTR	RMER6C	ERVK	chr4RMER6C153420955	ProperStrand	1	1	-inf
chr15	8054199	8054297	SINE	B4A	B4	chr15B4A8054219	ProperStrand	1	chr9	118674951	118675010	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr13	74604788	74604876	LINE	L1_Mur2	L1	chr13L1_Mur274604605	NonProperStrand	1	chr10	76368756	76368807	protein_coding	Pcbp3	intron	ENSMUSG00000001120	ProperStrand	179	1	-inf
chr6	79034467	79034557	LINE	L1Md_F2	L1	chr6L1Md_F279034452	NonProperStrand	2	chr5	81919874	81919974	protein_coding	Lphn3	intron	ENSMUSG00000037605	ProperStrand	27	1	-21.9988
chr15	85415085	85415138	lincRNA	AU022754	intron	ENSMUSG00000087046	ProperStrand	36	chr12	41155236	41155274	protein_coding	Zfp277	intron	ENSMUSG00000055917	NonProperStrand	75	1	-12.6062
chr9	66520232	66520322	LINE	L1M5	L1	chr9L1M566520242	ProperStrand	5	chr9	66520081	66520181	SINE	B4A	B4	chr9B4A66519945	ProperStrand	5	5	-inf
chr18	38428564	38428595	protein_coding	Pcdh12	exon	ENSMUSG00000024440	NonProperStrand	5	chr19	4552378	4552508	protein_coding	Pcx	intron	ENSMUSG00000024892	ProperStrand	54	1	-17.3473
chr12	33174146	33174236	LINE	L1MC	L1	chr12L1MC33174090	NonProperStrand	1	chr12	33174383	33174483	LTR	LTR33	ERVL	chr12LTR3333174232	NonProperStrand	1	1	-inf
chr15	27730963	27792243	protein_coding	Trio	intron	ENSMUSG00000022263	ProperStrand	54	chr9	123461907	123462138	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-4.2242
chr8	91626320	91626396	LINE	L1_Mus1	L1	chr8L1_Mus191623255	NonProperStrand	22	chr8	91626966	91626998	SINE	B2_Mm1a	B2	chr8B2_Mm1a91626921	NonProperStrand	1	1	-inf
chr12	74182828	74182918	SINE	B1_Mus2	Alu	chr12B1_Mus274182743	NonProperStrand	1	chr12	74183028	74183128	SINE	B2_Mm2	B2	chr12B2_Mm274183036	NonProperStrand	1	1	-inf
chr5	82959527	82959617	LINE	L1_Mur2	L1	chr5L1_Mur282959323	ProperStrand	1	chr5	82959019	82959119	LINE	Lx4B	L1	chr5Lx4B82958764	ProperStrand	1	1	-inf
chr8	122571271	122571333	protein_coding	Crispld2	intron	ENSMUSG00000031825	ProperStrand	44	chr8	119941153	119941221	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-10.8763
chr16	44263989	44264079	protein_coding	Sidt1	intron	ENSMUSG00000022696	ProperStrand	2	chr19	44313482	44313582	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	1	-17.3078
chr17	39846351	39846430	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	106141668	106141686	protein_coding	Tcam1	intron	ENSMUSG00000020712	NonProperStrand	2	1	-5.3533
chr17	39847080	39847238	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	3555308	3620809	protein_coding	Gucy1a2	intron	ENSMUSG00000041624	ProperStrand	26	3	-4.1728
chr17	39848020	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	174270557	174270614	SINE	B1_Mm	Alu	chr2B1_Mm174270434	ProperStrand	5	1	-3.2379
chr11	6527746	6527808	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr17	39843758	39843809	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-3.9725
chr8	4778249	4778339	protein_coding	Shcbp1	intron	ENSMUSG00000022322	NonProperStrand	3	chr2	163725644	163725744	protein_coding	Rims4	intron	ENSMUSG00000035226	NonProperStrand	11	3	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr14	7845007	7907293	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	2	-12.9744
chr2	130277698	130277765	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	chr17	66058343	66058377	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	80	1	-9.8615
chr4	78826121	78826221	LINE	Lx3B	L1	chr4Lx3B78825858	NonProperStrand	1	chr4	78825791	78825881	LTR	ORR1A1-int	MaLR	chr4ORR1A1-int78824730	ProperStrand	1	1	-inf
chr3	40801828	40801962	LINE	Lx2B	L1	chr3Lx2B40801055	ProperStrand	1	chr17	39847440	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	166825120	166825220	SINE	B1_Mm	Alu	chr2B1_Mm166825143	ProperStrand	1	chr9	95961375	95961465	Simple_repeat	(TTTC)n	Simple_repeat	chr9(TTTC)n95961295	ProperStrand	1	1	-inf
chr9	123461802	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	84726270	84833668	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	8	-7.9606
chr17	39846499	39846554	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	143942511	143942556	LTR	LTR16B2	ERVL	chr2LTR16B2143942495	ProperStrand	1	1	-inf
chr17	39847106	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	100429451	100429495	Other	RMER1B	Other	chr5RMER1B100429354	NonProperStrand	6	1	-3.9545
chr13	64281085	64281143	protein_coding	Habp4	intron	ENSMUSG00000021476	NonProperStrand	9	chr9	123461890	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr12	69373037	69373108	LINE	Lx5	L1	chr12Lx569371841	ProperStrand	16	chr12	69373193	69373242	LINE	Lx5	L1	chr12Lx569373104	ProperStrand	2	1	-inf
chr5	115725161	115725221	LTR	RLTR28	ERVL	chr5RLTR28115724862	NonProperStrand	1	chr5	115727516	115727559	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n115727519	NonProperStrand	1	1	-inf
chr15	19539367	19539457	LINE	L1Md_T	L1	chr15L1Md_T19539101	NonProperStrand	1	chr15	19539659	19539758	LINE	L1Md_T	L1	chr15L1Md_T19539598	ProperStrand	1	1	-inf
chr17	74374141	74374166	protein_coding	Srd5a2	intron	ENSMUSG00000038541	NonProperStrand	12	chr16	10661524	10661592	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	1	-12.7847
chr15	7183692	7183752	protein_coding-noncoding	Egflam	utr3	ENSMUSG00000042961	NonProperStrand	1	chr15	7183273	7183346	protein_coding	Egflam	intron	ENSMUSG00000042961	NonProperStrand	61	1	-inf
chr16	4162858	4162955	protein_coding	Crebbp	intron	ENSMUSG00000022521	ProperStrand	81	chr7	98689228	98689262	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-6.8298
chr17	39847850	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	65618242	65618262	protein_coding	Ints9	intron	ENSMUSG00000021975	ProperStrand	4	1	-3.7035
chr5	146261268	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr12	80441423	80441443	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-7.5137
chr14	113970084	113970174	LTR	MTE2a	MaLR	chr14MTE2a113969993	NonProperStrand	1	chr14	33967450	33967550	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr2	165811150	165811249	lincRNA	Gm11463	exon	ENSMUSG00000084816	NonProperStrand	3	chr2	165811013	165811103	lincRNA	Gm11464	intron	ENSMUSG00000087351	NonProperStrand	32	3	-inf
chr9	123462078	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	136821272	136821307	protein_coding	Mgp	exon	ENSMUSG00000030218	ProperStrand	7	1	-5.1121
chr2	132881585	132881685	LINE	L1_Rod	L1	chr2L1_Rod132881593	NonProperStrand	1	chr2	132881813	132881903	LINE	Lx7	L1	chr2Lx7132881762	NonProperStrand	1	1	-inf
chr8	124253553	124259781	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	chr8	124253273	124253426	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	2	-7.2696
chr4	53860733	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.0599
chr1	23549141	23549231	LTR	MTE2b	MaLR	chr1MTE2b23549144	ProperStrand	1	chr1	23548998	23549098	SINE	B1_Mus1	Alu	chr1B1_Mus123549000	ProperStrand	1	1	-inf
chr6	143198595	143198685	lincRNA	D6Ertd474e	intron	ENSMUSG00000072679	ProperStrand	65	chr19	8826020	8826120	protein_coding	Stx5a	intron	ENSMUSG00000010110	ProperStrand	40	1	-12.6810
chr9	12940413	12940460	LINE	L1_Mus1	L1	chr9L1_Mus112938072	ProperStrand	1	chr11	33259531	33259636	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-inf
chr4	130792627	130792727	DNA	Arthur1	Tip100	chr4Arthur1130792638	ProperStrand	1	chr16	18826773	18826863	protein_coding-noncoding	Ufd1l	utr5	ENSMUSG00000005262	ProperStrand	1	1	-inf
chr10	86795146	86795194	LTR	ORR1D2	MaLR	chr10ORR1D286795092	NonProperStrand	1	chr1	91382603	91382700	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	65	1	-inf
chr8	4365854	4365944	LTR	RLTR12B	ERVK	chr8RLTR12B4365807	ProperStrand	1	chr8	4365628	4365728	SINE	B1_Mur3	Alu	chr8B1_Mur34365589	ProperStrand	1	1	-inf
chr16	35981723	35981753	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr8	105308259	105308299	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	1	-8.1681
chr9	107614252	107614283	SINE	B2_Mm2	B2	chr9B2_Mm2107614147	NonProperStrand	1	chr15	88999164	88999231	protein_coding	Plxnb2	intron	ENSMUSG00000036606	NonProperStrand	5	1	-inf
chr3	158640680	158640780	LINE	L1Md_F2	L1	chr3L1Md_F2158639934	ProperStrand	1	chr3	158640914	158641004	LINE	L1_Mm	L1	chr3L1_Mm158640891	NonProperStrand	1	1	-inf
chr15	12330041	12330125	protein_coding	Pdzd2	intron	ENSMUSG00000022197	NonProperStrand	64	chr5	100992913	100992948	protein_coding	Plac8	intron	ENSMUSG00000029322	ProperStrand	2	1	-19.5861
chr6	143078164	143078264	LTR	RMER21A	ERV1	chr6RMER21A143078050	NonProperStrand	13	chr9	123461801	123461891	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr1	149653425	149653442	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int149652500	ProperStrand	16	chr6	116662044	116662096	protein_coding	Tmem72	intron	ENSMUSG00000048108	ProperStrand	5	1	-inf
chr17	39847255	39847352	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	55602982	55606645	protein_coding	Pdlim7	intron	ENSMUSG00000021493	NonProperStrand	20	3	-5.1210
chr4	155350356	155350402	LINE	L1Md_F2	L1	chr4L1Md_F2155349911	NonProperStrand	4	chr4	155352840	155352925	LTR	MT2B	ERVL	chr4MT2B155352824	ProperStrand	1	1	-inf
chr17	31647291	31648040	protein_coding	Wdr4	intron	ENSMUSG00000024037	NonProperStrand	6	chr7	99945363	99945545	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	5	-inf
chr9	123461831	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr6	85285327	85285417	protein_coding	Rab11fip5	utr3	ENSMUSG00000051343	ProperStrand	11	1	-4.1956
chr18	80128764	80128836	LINE	Lx8	L1	chr18Lx880128441	ProperStrand	10	chr18	80129618	80129681	LTR	RLTR13B2	ERVK	chr18RLTR13B280129253	NonProperStrand	10	1	-19.1789
chr11	109011784	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	179587677	179587696	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	1	-4.7188
chr4	133292369	133292415	protein_coding	Arid1a	intron	ENSMUSG00000007880	ProperStrand	53	chr4	98738157	98738213	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	1	-11.0727
chr6	49236498	49236580	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr9	47680824	47680858	SINE	ID_B1	B4	chr9ID_B147680746	ProperStrand	1	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr18	33187633	33187664	protein_coding	Camk4	intron	ENSMUSG00000038128	ProperStrand	6	1	-15.3727
chr1	13565816	13565840	protein_coding	Tram1	intron	ENSMUSG00000025935	ProperStrand	10	chr7	126934831	126934878	protein_coding	Eri2	intron	ENSMUSG00000030929	NonProperStrand	2	1	-20.0413
chr15	97339327	97339417	LTR	MT2A	ERVL	chr15MT2A97339302	NonProperStrand	1	chr15	97339414	97339514	LTR	MT2A	ERVL	chr15MT2A97339385	NonProperStrand	1	1	-inf
chr11	12442041	12442130	LTR	RLTR13B3	ERVK	chr11RLTR13B312441472	NonProperStrand	5	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr14	91135297	91135387	LINE	Lx6	L1	chr14Lx691134809	NonProperStrand	1	chr14	91135408	91135508	LTR	ORR1A1	MaLR	chr14ORR1A191135428	ProperStrand	1	1	-inf
chr11	90650995	90651110	LINE	Lx3B	L1	chr11Lx3B90650808	ProperStrand	2	chr17	39847767	39847797	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr9	47851476	47851576	LINE	L1MEe	L1	chr9L1MEe47851455	ProperStrand	2	chr9	47851386	47851476	SINE	ID_B1	B4	chr9ID_B147851321	ProperStrand	1	1	-inf
chr4	118248904	118248976	protein_coding	Wdr65	intron	ENSMUSG00000028730	ProperStrand	288	chr6	115808033	115808115	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-7.7067
chr9	123366985	123367001	protein_coding	Lars2	intron	ENSMUSG00000035202	NonProperStrand	2	chr19	3711891	3711972	protein_coding	1810055G02Rik	intron	ENSMUSG00000035372	NonProperStrand	2	1	-19.8939
chr5	122345261	122345361	protein_coding-noncoding	Cux2	utr3	ENSMUSG00000042589	NonProperStrand	1	chr5	122345017	122345107	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-inf
chr3	82230265	82230365	LINE	Lx7	L1	chr3Lx782230102	NonProperStrand	1	chr3	82230027	82230117	Low_complexity	AT_rich	Low_complexity	chr3AT_rich82230030	ProperStrand	1	1	-inf
chr17	39847440	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	36594923	36594942	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	6	-3.6438
chr17	39847454	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	4799683	4799726	protein_coding	Isoc2b	intron	ENSMUSG00000052605	NonProperStrand	3	1	-4.3512
chr10	94789926	94789942	SINE	PB1D10	Alu	chr10PB1D1094789915	NonProperStrand	4	chr9	15382219	15382237	protein_coding	Ccdc67	intron	ENSMUSG00000039977	NonProperStrand	12	1	-22.2547
chr1	24527206	24527296	protein_coding	Col19a1	intron	ENSMUSG00000026141	NonProperStrand	17	chr1	24586279	24586379	protein_coding	Col19a1	intron	ENSMUSG00000026141	ProperStrand	11	1	-18.0024
chr4	141167178	141167268	SINE	B1_Mur2	Alu	chr4B1_Mur2141167141	NonProperStrand	2	chr4	141167361	141167461	SINE	B1_Mur3	Alu	chr4B1_Mur3141167311	NonProperStrand	2	2	-inf
chr4	43492783	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr19	46767783	46767876	protein_coding	2010012O05Rik	intron	ENSMUSG00000062376	ProperStrand	7	1	-11.5026
chr3	27112003	27112103	protein_coding	Nceh1	intron	ENSMUSG00000027698	NonProperStrand	62	chr5	136989180	136989604	protein_coding	Cux1	intron	ENSMUSG00000029705	ProperStrand	30	1	-13.3600
chr17	39848502	39848532	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chrX	71325893	71325913	protein_coding	Mecp2	intron	ENSMUSG00000031393	ProperStrand	2	1	-8.7208
chr1	79671875	79671957	SINE	B1_Mus2	Alu	chr1B1_Mus279671803	ProperStrand	1	chr7	133746700	133746772	SINE	RSINE1	B4	chr7RSINE1133746688	ProperStrand	1	1	-inf
chr10	126900398	126900498	protein_coding	R3hdm2	intron	ENSMUSG00000025404	ProperStrand	2	chr4	110878510	110878600	protein_coding	Agbl4	intron	ENSMUSG00000061298	ProperStrand	46	1	-20.5155
chrX	151823000	151823090	Other	RMER1B	Other	chrXRMER1B151822304	ProperStrand	1	chr3	9494777	9494877	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-inf
chr3	123507936	123507952	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr15	80153260	80153350	protein_coding	Cacna1i	intron	ENSMUSG00000022416	ProperStrand	114	1	-11.1826
chr11	115877682	115877768	SINE	B1_Mm	Alu	chr11B1_Mm115877681	ProperStrand	1	chr13	44869952	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr8	70262723	70262766	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	chr1	72255081	72255195	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-7.5115
chr10	24597845	24597982	protein_coding	Med23	intron	ENSMUSG00000019984	ProperStrand	8	chr12	73324389	73324421	protein_coding	Rtn1	exon	ENSMUSG00000021087	NonProperStrand	36	2	-inf
chr13	73806126	73806196	protein_coding	Slc6a18	intron	ENSMUSG00000021612	NonProperStrand	42	chr19	34567557	34567643	protein_coding	Lipa	utr3	ENSMUSG00000024781	NonProperStrand	2	1	-21.0495
chr9	113962042	113962142	LTR	MTD	MaLR	chr9MTD113962023	NonProperStrand	2	chr9	113961926	113962016	SINE	B1_Mus1	Alu	chr9B1_Mus1113961875	ProperStrand	2	2	-inf
chr8	22179785	22179885	LINE	L1_Mus1	L1	chr8L1_Mus122178513	ProperStrand	2	chr8	22179930	22180020	snRNA	ENSMUSG00000075842_U6	.	ENSMUSG00000075842	ProperStrand	1	1	-inf
chr6	40274435	40274535	LTR	RMER15	ERVL	chr6RMER1540274372	NonProperStrand	1	chr6	40274273	40274363	LTR	RMER5	ERV1	chr6RMER540274226	ProperStrand	1	1	-inf
chrX	60706244	60706334	LINE	L1Md_A	L1	chrXL1Md_A60705438	ProperStrand	2	chrX	60706441	60706542	LINE	L1_Mus1	L1	chrXL1_Mus160706470	NonProperStrand	2	2	-inf
chr4	137018677	137048655	SINE	B2_Mm1a	B2	chr4B2_Mm1a137018688	NonProperStrand	1	chr4	137048664	137048754	protein_coding	Hspg2	intron	ENSMUSG00000028763	NonProperStrand	25	1	-inf
chr4	45398176	45398205	LTR	MMETn-int	ERVK	chr4MMETn-int45396022	ProperStrand	5	chr13	44869629	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr6	3201430	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	44553696	44553757	Simple_repeat	(TTTC)n	Simple_repeat	chr19(TTTC)n44553545	NonProperStrand	2	1	-10.1342
chr2	128637153	128641371	SINE	PB1D10	Alu	chr2PB1D10128637130	NonProperStrand	2	chr2	128653193	128657159	protein_coding	Tmem87b	intron	ENSMUSG00000014353	NonProperStrand	20	1	-20.4416
chr13	6593110	6593157	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr1	186739710	186739770	protein_coding	Mark1	intron	ENSMUSG00000026620	ProperStrand	36	1	-11.7469
chr11	94597686	94597752	Low_complexity	CT-rich	Low_complexity	chr11CT-rich94597666	NonProperStrand	1	chr12	100469345	100469442	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	1	-inf
chr15	73006144	73006226	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	chr13	97190549	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.7968
chr5	115484625	115484690	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr5	100660238	100660264	pseudogene	Gm8091	.	ENSMUSG00000085915	ProperStrand	92	1	-8.2994
chr8	71889005	71889105	LINE	L1Md_F2	L1	chr8L1Md_F271887114	NonProperStrand	3	chr8	71041819	71041909	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-16.9112
chr13	97487267	97487317	LTR	MTD	MaLR	chr13MTD97487052	ProperStrand	5	chr17	39846659	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr6	33513894	33513925	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr6	84940788	84940810	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-4.6576
chr17	59242641	59242732	LTR	MTA_Mm-int	MaLR	chr17MTA_Mm-int59242556	ProperStrand	1	chr17	59242447	59242547	LTR	MTA_Mm	MaLR	chr17MTA_Mm59242161	ProperStrand	1	1	-inf
chr15	12813552	12813639	protein_coding	Drosha	intron	ENSMUSG00000022191	NonProperStrand	14	chr8	109618884	109618908	protein_coding	Terf2	intron	ENSMUSG00000031921	ProperStrand	37	1	-15.9680
chr15	59520660	59520760	LINE	Lx5	L1	chr15Lx559520629	NonProperStrand	4	chr15	59520548	59520638	LTR	MTB_Mm	MaLR	chr15MTB_Mm59520304	NonProperStrand	4	2	-inf
chr8	116566916	116567016	DNA	RCHARR1	MER1_type	chr8RCHARR1116566214	ProperStrand	1	chr8	116567228	116567318	SINE	RSINE1	B4	chr8RSINE1116567169	NonProperStrand	1	1	-inf
chr1	136364890	136364946	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr11	35452541	35452619	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-7.2217
chr19	45450264	45450363	protein_coding	Btrc	intron	ENSMUSG00000025217	NonProperStrand	40	chr5	121208790	121208880	protein_coding	Oas3	exon	ENSMUSG00000032661	NonProperStrand	174	1	-10.7038
chr7	10292682	10292782	LINE	L1Md_F2	L1	chr7L1Md_F210290791	ProperStrand	1	chr7	27857814	27857904	LTR	RLTR21	ERVK	chr7RLTR2127857750	NonProperStrand	1	1	-inf
chr13	46500086	46500186	LINE	L1MEf	L1	chr13L1MEf46500046	NonProperStrand	1	chr13	46500501	46500591	LTR	ORR1B1	MaLR	chr13ORR1B146500476	NonProperStrand	1	1	-inf
chr2	121216081	121221167	SINE	B3A	B2	chr2B3A121216087	ProperStrand	4	chr2	121221194	121221284	protein_coding	Catsper2	intron	ENSMUSG00000033486	ProperStrand	14	4	-inf
chr2	144371091	144371116	protein_coding-noncoding	Rbbp9	utr3	ENSMUSG00000027428	NonProperStrand	3	chr2	144370215	144370250	protein_coding	Rbbp9	intron	ENSMUSG00000027428	NonProperStrand	10	3	-inf
chr4	63445392	63445461	LINE	L1MC3	L1	chr4L1MC363445276	ProperStrand	1	chr4	63445644	63445696	SINE	B3A	B2	chr4B3A63445645	ProperStrand	1	1	-inf
chr13	97190555	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr16	23111379	23111429	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	16	1	-7.7580
chr11	41886998	41887088	LINE	L1Md_F2	L1	chr11L1Md_F241886956	ProperStrand	1	chr11	41886604	41886704	LINE	L1_Mus2	L1	chr11L1_Mus241882559	ProperStrand	1	1	-inf
chrX	75104277	75105680	LINE	L1M2	L1	chrXL1M275104258	ProperStrand	3	chrX	75104450	75106368	LINE	L1_Mm	L1	chrXL1_Mm75105463	ProperStrand	3	3	-inf
chr17	36017413	36017514	protein_coding	Dhx16	intron	ENSMUSG00000024422	ProperStrand	11	chr17	35998261	35998314	protein_coding	Nrm	utr5	ENSMUSG00000059791	ProperStrand	10	1	-19.4454
chr8	119515169	119515259	protein_coding-noncoding	Gcsh	utr3	ENSMUSG00000034424	ProperStrand	2	chr8	119514144	119514244	protein_coding	Gcsh	intron	ENSMUSG00000034424	ProperStrand	57	2	-inf
chr7	70011829	70011929	LINE	L1Md_F2	L1	chr7L1Md_F270006892	NonProperStrand	1	chr7	70012110	70012200	LINE	L1Md_F2	L1	chr7L1Md_F270011999	NonProperStrand	1	1	-inf
chr7	80025924	80025971	LINE	L1ME3A	L1	chr7L1ME3A80025921	ProperStrand	1	chr17	39848007	39848064	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	56745558	56745638	LINE	Lx5	L1	chr14Lx556745534	NonProperStrand	3	chr14	56745276	56745354	LTR	RLTR28	ERVL	chr14RLTR2856745282	NonProperStrand	6	2	-inf
chr11	73083080	73083102	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	chr2	10384712	10384823	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-12.2466
chr11	6528106	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr2	41344451	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-12.4106
chr17	39847129	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	28049107	28049166	protein_coding-noncoding	Numbl	utr5	ENSMUSG00000063160	NonProperStrand	8	2	-5.9593
chr15	8687356	8687383	LTR	MTA_Mm	MaLR	chr15MTA_Mm8687005	NonProperStrand	1	chr5	73098950	73099043	protein_coding	Txk	intron	ENSMUSG00000054892	ProperStrand	40	1	-inf
chrX	48257926	48258020	protein_coding	Frmd7	intron	ENSMUSG00000036131	NonProperStrand	47	chr5	107907376	107907415	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-10.9466
chr17	39847244	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	92898348	92898430	protein_coding	Vmn2r72-ps	intron	ENSMUSG00000051877	NonProperStrand	9	1	-3.1539
chr18	44388618	44388652	LINE	L1Md_T	L1	chr18L1Md_T44388071	ProperStrand	7	chr7	35042490	35042576	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	ProperStrand	102	1	-15.3856
chr17	39846751	39846797	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	161167942	161167978	protein_coding	Rfwd2	intron	ENSMUSG00000040782	ProperStrand	5	1	-3.1907
chr15	72673246	72673284	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	chr3	153605419	153605504	protein_coding	Acadm	intron	ENSMUSG00000062908	ProperStrand	41	1	-9.4428
chr11	69073509	69073562	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	chr10	41414718	41414804	protein_coding	Ccdc162	intron	ENSMUSG00000075225	ProperStrand	32	1	-14.7643
chr1	12474820	12474920	LINE	L1_Mus1	L1	chr1L1_Mus112474740	ProperStrand	1	chr1	12474521	12474611	LINE	L1_Mus2	L1	chr1L1_Mus212473040	NonProperStrand	1	1	-inf
chr8	33827939	33828012	LINE	L1Md_T	L1	chr8L1Md_T33824728	NonProperStrand	15	chr8	33822209	33822292	LINE	L2a	L2	chr8L2a33822061	ProperStrand	3	1	-inf
chr15	81704944	81705056	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	chr1	53925721	53925738	protein_coding	Hecw2	exon	ENSMUSG00000042807	ProperStrand	14	1	-14.4854
chr9	123025803	123025822	protein_coding	Exosc7	intron	ENSMUSG00000025785	NonProperStrand	3	chr2	109982954	109983078	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	1	-15.4977
chr4	40732604	40732716	LINE	L1MEg	L1	chr4L1MEg40732314	ProperStrand	2	chr1	178028037	178028063	protein_coding	Pld5	intron	ENSMUSG00000055214	ProperStrand	9	1	-inf
chr6	3201509	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	5531075	5531123	protein_coding	Ankrd36	intron	ENSMUSG00000020481	NonProperStrand	11	1	-6.1647
chr17	71636394	71636452	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	chrX	163021975	163022023	protein_coding	Egfl6	intron	ENSMUSG00000000402	NonProperStrand	7	1	-14.7977
chr8	124258729	124258844	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	chr2	71900693	71900722	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-7.7036
chrX	137321927	137322017	antisense	Eif2c5	.	ENSMUSG00000085146	NonProperStrand	1	chrX	137591765	137591865	protein_coding	Atg4a	intron	ENSMUSG00000079418	NonProperStrand	2	1	-inf
chr17	39845930	39845959	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	17033662	17033782	LTR	RMER16	ERVK	chr7RMER1617033629	NonProperStrand	1	1	-inf
chr4	155175439	155175482	SINE	B2_Mm1a	B2	chr4B2_Mm1a155175347	ProperStrand	1	chr4	155193198	155193313	protein_coding-noncoding	Ccnl2	utr5	ENSMUSG00000029068	NonProperStrand	9	1	-inf
chr17	39848227	39848269	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	35916925	35916998	lincRNA	4833427F10Rik	intron	ENSMUSG00000092171	ProperStrand	2	1	-8.4422
chr12	25057414	25057431	LTR	RMER16-int	ERVK	chr12RMER16-int25057131	ProperStrand	7	chr17	39846049	39846173	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-6.0522
chr15	100192102	100192125	protein_coding	Mettl7a2	utr3	ENSMUSG00000056487	ProperStrand	1	chr15	100192975	100193060	protein_coding	RP24-73K9.3	intron	ENSMUSG00000093789	ProperStrand	22	1	-inf
chr5	76556579	76556631	LINE	L1M5	L1	chr5L1M576556127	NonProperStrand	1	chr5	76556890	76556932	LINE	L1M5	L1	chr5L1M576556843	NonProperStrand	4	1	-inf
chr5	65389092	65389505	protein_coding	Fam114a1	intron	ENSMUSG00000029185	NonProperStrand	71	chr9	118674951	118675008	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.6405
chr10	77992044	77993417	LINE	L1_Mur3	L1	chr10L1_Mur377992233	ProperStrand	10	chr10	77990800	77991429	LINE	Lx6	L1	chr10Lx677990988	ProperStrand	8	5	-23.0413
chr3	65379849	65379904	LTR	MurERV4-int	ERVK	chr3MurERV4-int65379740	NonProperStrand	1	chr3	65380468	65380523	LTR	RMER4A	ERVK	chr3RMER4A65380207	NonProperStrand	1	1	-inf
chr17	39848554	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	24352576	24352593	LINE	L1VL4	L1	chr7L1VL424352269	NonProperStrand	1	1	-inf
chr10	122566587	122566687	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	chr14	48109649	48109739	protein_coding	Fbxo34	intron	ENSMUSG00000037536	ProperStrand	4	1	-19.2369
chr17	32147772	32147826	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	chr7	27468531	27468551	protein_coding	Cyp2b23	intron	ENSMUSG00000040650	ProperStrand	2	1	-18.4085
chr6	28810002	28810075	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr3	132767911	132767994	protein_coding	Ints12	intron	ENSMUSG00000028016	ProperStrand	11	1	-9.9744
chr19	45335244	45335263	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr18	56752994	56753074	protein_coding	1700065I17Rik	intron	ENSMUSG00000032900	ProperStrand	18	1	-14.0756
chr16	42416375	42416444	LINE	L1Md_T	L1	chr16L1Md_T42416202	ProperStrand	1	chr4	116599029	116599108	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-inf
chr1	170885509	170885525	LINE	L1_Rod	L1	chr1L1_Rod170885236	NonProperStrand	1	chr4	101445891	101445943	protein_coding	Lepr	intron	ENSMUSG00000057722	ProperStrand	109	1	-inf
chr10	95121185	95121217	LTR	MLT1A0	MaLR	chr10MLT1A095121102	NonProperStrand	1	chr15	82973275	82973315	protein_coding	Poldip3	intron	ENSMUSG00000041815	ProperStrand	9	1	-inf
chr4	151961643	151961760	LTR	ORR1A2	MaLR	chr4ORR1A2151961390	NonProperStrand	6	chr14	64636609	64636642	protein_coding	Rp1l1	intron	ENSMUSG00000046049	ProperStrand	5	2	-inf
chr18	60845510	60845610	SINE	B1_Mur1	Alu	chr18B1_Mur160845464	NonProperStrand	2	chr18	60845608	60845698	protein_coding	Ndst1	utr3	ENSMUSG00000054008	ProperStrand	5	2	-inf
chr10	40258527	40258551	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr1	161037403	161037437	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	8	1	-9.4450
chr17	39846395	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	72391159	72391253	SINE	B1_Mur1	Alu	chr11B1_Mur172391110	ProperStrand	2	1	-5.3533
chr1	17041841	17041936	protein_coding	Jph1	intron	ENSMUSG00000042686	ProperStrand	39	chr12	81756391	81756448	protein_coding	Slc39a9	intron	ENSMUSG00000048833	NonProperStrand	63	1	-12.7944
chr6	3201499	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr18	25432331	25432382	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	1	-3.2972
chr1	180802887	180802977	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	62	chrX	101825362	101825462	protein_coding	Zdhhc15	intron	ENSMUSG00000033906	NonProperStrand	9	1	-15.8612
chr5	33516853	33518691	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr5	33520165	33520249	Simple_repeat	(CATA)n	Simple_repeat	chr5(CATA)n33520108	NonProperStrand	31	2	-16.5359
chr13	58245530	58245620	LTR	MMERVK10C-int	ERVK	chr13MMERVK10C-int58245178	ProperStrand	6	chr13	35865171	35865271	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-13.2588
chr8	3536991	3537290	protein_coding	Pnpla6	exon	ENSMUSG00000004565	ProperStrand	27	chr9	123462078	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.4791
chr12	40211888	40211988	LINE	L1Md_F2	L1	chr12L1Md_F240211884	NonProperStrand	1	chr13	109389809	109389899	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-inf
chr17	39846419	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	25578974	25579052	LTR	MTC	MaLR	chr8MTC25578836	ProperStrand	1	1	-inf
chr18	30290789	30290879	LINE	L1Md_A	L1	chr18L1Md_A30290139	NonProperStrand	1	chr17	39847028	39847128	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	41897831	41911825	LINE	Lx3C	L1	chrXLx3C41909734	NonProperStrand	1	chr17	39846353	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846462	39846486	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	31844386	31844408	SINE	B2_Mm2	B2	chr13B2_Mm231844278	NonProperStrand	2	1	-5.3533
chr12	78350926	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr15	79369145	79369203	protein_coding	Ddx17	intron	ENSMUSG00000055065	ProperStrand	20	1	-8.0939
chr1	100976328	100976428	LINE	L1_Mus1	L1	chr1L1_Mus1100976167	NonProperStrand	1	chr1	100976099	100976190	LTR	RLTR20A	ERVK	chr1RLTR20A100976051	ProperStrand	1	1	-inf
chr8	80843922	80843982	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr15	5117703	5117789	protein_coding	Prkaa1	intron	ENSMUSG00000050697	ProperStrand	28	1	-8.8164
chr10	23785346	23785448	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr12	71203347	71203387	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	1	-9.8628
chr14	21055392	21055433	LTR	RMER15	ERVL	chr14RMER1521055075	ProperStrand	1	chr9	123461957	123462023	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	79959075	79959148	LINE	L2b	L2	chr15L2b79959024	NonProperStrand	6	chr17	39847621	39847692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-8.2102
chr19	44395781	44395847	DNA	Charlie1	MER1_type	chr19Charlie144395748	NonProperStrand	1	chr19	44395870	44395931	SINE	B3A	B2	chr19B3A44395887	ProperStrand	1	1	-inf
chr2	32415458	32415558	protein_coding-noncoding	Fam102a	utr5	ENSMUSG00000039157	NonProperStrand	6	chr2	32415567	32415657	protein_coding	Fam102a	exon	ENSMUSG00000039157	NonProperStrand	21	6	-inf
chr10	128560159	128560201	LINE	L1_Mur3	L1	chr10L1_Mur3128560039	NonProperStrand	2	chr13	44869604	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr15	9139798	9139888	LTR	RLTR25A	ERVK	chr15RLTR25A9138809	ProperStrand	1	chr15	9110777	9110819	protein_coding	Lmbrd2	intron	ENSMUSG00000039704	NonProperStrand	39	1	-inf
chr16	13409804	13409904	protein_coding	Mkl2	intron	ENSMUSG00000009569	NonProperStrand	14	chr16	22020025	22020115	protein_coding	Senp2	intron	ENSMUSG00000022855	NonProperStrand	6	1	-20.1678
chr12	111542686	111542702	LTR	RLTRETN_Mm	ERVK	chr12RLTRETN_Mm111542631	ProperStrand	1	chr4	116016049	116016144	protein_coding	Mast2	intron	ENSMUSG00000003810	ProperStrand	73	1	-inf
chr13	96398803	96400774	protein_coding	Iqgap2	intron	ENSMUSG00000021676	NonProperStrand	66	chr3	90213249	90213611	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	1	-13.2999
chr15	35794651	35794739	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	chr19	12011115	12011136	protein_coding	Patl1	intron	ENSMUSG00000046139	NonProperStrand	6	1	-15.2793
chr10	87096754	87096844	LINE	L1Md_T	L1	chr10L1Md_T87095128	ProperStrand	1	chr10	87097135	87097235	LINE	L1Md_T	L1	chr10L1Md_T87096959	ProperStrand	1	1	-inf
chr17	39846750	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	3691851	3692049	protein_coding	Gm14548	intron	ENSMUSG00000074417	ProperStrand	1	1	-inf
chr4	121146721	121146771	LINE	L1Md_F2	L1	chr4L1Md_F2121143725	ProperStrand	5	chr4	99105315	99105380	LINE	L1Md_T	L1	chr4L1Md_T99101458	NonProperStrand	3	1	-inf
chr18	69003990	69004080	LINE	L1M3	L1	chr18L1M369003990	ProperStrand	1	chr19	61142356	61142456	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	16	1	-inf
chr13	44869596	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr17	33829809	33838165	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-5.6550
chr14	77667358	77667420	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	chr6	13627101	13627173	protein_coding	B630005N14Rik	intron	ENSMUSG00000042742	ProperStrand	12	1	-12.6108
chr5	146261007	146261071	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	124713108	124714048	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	1	-3.4356
chr17	39846758	39846789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	30116052	30116327	SINE	B3	B2	chr5B330116168	ProperStrand	1	1	-inf
chr2	162906618	162906634	protein_coding	Mybl2	intron	ENSMUSG00000017861	NonProperStrand	5	chr16	36078441	36078467	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	1	-16.3282
chr9	118674952	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr17	31111022	31111239	protein_coding	Umodl1	intron	ENSMUSG00000054134	ProperStrand	35	1	-7.0406
chr17	8181913	8181996	LTR	MLT1A0	MaLR	chr17MLT1A08181773	ProperStrand	3	chr17	8177584	8177607	SINE	RSINE1	B4	chr17RSINE18177566	ProperStrand	1	1	-inf
chr3	145775395	145775429	LTR	MTE2b	MaLR	chr3MTE2b145775387	NonProperStrand	2	chr9	123461892	123461916	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	44869574	44936477	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr13	97190544	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	20	-15.9847
chr17	39848669	39848759	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	124530779	124530879	protein_coding	Abcb9	intron	ENSMUSG00000029408	ProperStrand	14	1	-4.3119
chr15	102090396	102090473	LINE	L1M2	L1	chr15L1M2102090220	ProperStrand	2	chr15	102091098	102091161	SINE	B1_Mus1	Alu	chr15B1_Mus1102091015	ProperStrand	2	2	-inf
chr17	80669681	80669715	protein_coding	Dhx57	intron	ENSMUSG00000035051	ProperStrand	50	chr5	8323994	8324077	protein_coding	Adam22	intron	ENSMUSG00000040537	ProperStrand	77	1	-11.8884
chr17	35882475	35882589	lincRNA	Gm20442	intron	ENSMUSG00000092600	NonProperStrand	38	chr11	119143523	119143544	protein_coding	Gaa	intron	ENSMUSG00000025579	NonProperStrand	24	1	-14.8034
chr2	90965257	90965307	protein_coding	Mybpc3	intron	ENSMUSG00000002100	ProperStrand	18	chr2	90955639	90955722	protein_coding	Sfpi1	utr3	ENSMUSG00000002111	ProperStrand	32	1	-15.7301
chr19	29517758	29517834	protein_coding	Pdcd1lg2	intron	ENSMUSG00000016498	NonProperStrand	7	chr2	73502212	73502298	protein_coding	Chn1	intron	ENSMUSG00000056486	ProperStrand	42	1	-17.2165
chr19	43930064	43930154	protein_coding	Dnmbp	intron	ENSMUSG00000025195	ProperStrand	5	chr11	88937023	88941355	protein_coding	Gm525	intron	ENSMUSG00000072553	NonProperStrand	10	1	-22.6756
chr17	39847160	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	22200977	22200994	SINE	B2_Mm1t	B2	chr9B2_Mm1t22200919	ProperStrand	1	1	-inf
chr7	123260070	123260107	SINE	RSINE1	B4	chr7RSINE1123260057	NonProperStrand	1	chr9	123462079	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	46683261	46683890	protein_coding	Cap2	intron	ENSMUSG00000021373	NonProperStrand	63	chr5	114851975	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-9.2055
chr1	164829554	164829572	LINE	L1Md_F2	L1	chr1L1Md_F2164829434	NonProperStrand	1	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	39848226	39848353	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	168601393	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	1	-3.0353
chr17	39847958	39847982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	97701154	97703228	protein_coding	Vdr	intron	ENSMUSG00000022479	ProperStrand	5	1	-3.2379
chr3	145892601	145892642	protein_coding	Lpar3	intron	ENSMUSG00000036832	ProperStrand	8	chr1	72226247	72226355	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-15.4902
chr10	58874733	58874791	protein_coding	Pla2g12b	intron	ENSMUSG00000009646	ProperStrand	3	chr12	81373547	81373628	protein_coding	CT030161.1	intron	ENSMUSG00000079585	ProperStrand	5	1	-inf
chr17	39847839	39847865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	89552842	89552955	SINE	B3	B2	chr6B389552868	ProperStrand	1	1	-inf
chr16	13022502	13022602	LINE	L1MC	L1	chr16L1MC13022387	ProperStrand	1	chr16	13022056	13022146	LTR	MTE2b	MaLR	chr16MTE2b13022025	NonProperStrand	1	1	-inf
chr9	49686433	49686533	LTR	ORR1A4-int	MaLR	chr9ORR1A4-int49684498	ProperStrand	7	chr9	49686584	49686674	LTR	ORR1A4	MaLR	chr9ORR1A449686512	ProperStrand	4	3	-inf
chr19	46008339	46008356	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	chr12	54060283	54060310	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-7.8105
chr17	45573190	45573263	lincRNA	B230354K17Rik	exon	ENSMUSG00000073393	NonProperStrand	85	chr17	30746852	30746934	protein_coding	Glo1	intron	ENSMUSG00000024026	NonProperStrand	25	1	-13.0959
chr19	4787762	4787790	protein_coding	Rbm14	exon	ENSMUSG00000006456	ProperStrand	194	chr11	68146651	68146749	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	1	-6.9147
chr17	94831033	94831123	LINE	Lx2	L1	chr17Lx294830400	NonProperStrand	1	chr17	94831192	94831292	LTR	MTC-int	MaLR	chr17MTC-int94831111	NonProperStrand	1	1	-inf
chr11	98049424	98049542	protein_coding	Med1	intron	ENSMUSG00000018160	ProperStrand	21	chr7	141219064	141219107	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-11.9349
chr8	64811798	64823044	LTR	IAPEz-int	ERVK	chr8IAPEz-int64822847	NonProperStrand	1	chr11	6418288	6419171	protein_coding	Myo1g	exon	ENSMUSG00000020437	NonProperStrand	91	1	-inf
chr10	18097674	18097820	LINE	L1MD2	L1	chr10L1MD218097403	ProperStrand	1	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr1	122357166	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr6	8210296	8210371	protein_coding	Gm16039	intron	ENSMUSG00000089862	ProperStrand	20	1	-11.1331
chr1	134473802	134473912	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr16	30308258	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-9.4591
chr16	58584357	58584447	LTR	MLT1C	MaLR	chr16MLT1C58584286	NonProperStrand	1	chr16	58584170	58584270	LTR	ORR1B1	MaLR	chr16ORR1B158583967	NonProperStrand	1	1	-inf
chr17	39846749	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	30072243	30072281	SINE	B1_Mus2	Alu	chr2B1_Mus230072202	NonProperStrand	3	1	-4.3017
chr1	156823197	156823297	SINE	RSINE1	B4	chr1RSINE1156823146	NonProperStrand	1	chr1	156823308	156823398	Simple_repeat	(CATA)n	Simple_repeat	chr1(CATA)n156823303	NonProperStrand	1	1	-inf
chr18	49413402	49413492	LINE	L1MC1	L1	chr18L1MC149413348	NonProperStrand	1	chr13	100085373	100085473	SINE	B1F	Alu	chr13B1F100085360	NonProperStrand	1	1	-inf
chr1	31481577	31481678	LINE	L1_Mur2	L1	chr1L1_Mur231481447	ProperStrand	1	chr1	31481855	31481945	LINE	Lx8	L1	chr1Lx831481867	NonProperStrand	1	1	-inf
chr17	39843587	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr1	163779870	163779887	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	19	1	-4.6992
chr9	43209001	43209088	LTR	RMER15	ERVL	chr9RMER1543208969	ProperStrand	1	chr9	43208660	43208737	Other	RMER1A	Other	chr9RMER1A43207984	NonProperStrand	1	1	-inf
chr3	136635946	136636036	LINE	Lx3C	L1	chr3Lx3C136634961	NonProperStrand	1	chr15	72994498	72994598	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	9	1	-inf
chr14	9881755	9881813	LTR	IAPEz-int	ERVK	chr14IAPEz-int9877829	NonProperStrand	1	chr17	39846521	39846560	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	128458454	128458520	LINE	L1Md_F2	L1	chr10L1Md_F2128452461	ProperStrand	2	chr17	39847552	39847593	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr5	88553164	88553254	LINE	L1Md_T	L1	chr5L1Md_T88552966	ProperStrand	3	chr5	88616761	88616861	LINE	L1VL4	L1	chr5L1VL488616637	NonProperStrand	3	3	-inf
chr6	17654145	17656254	protein_coding	St7	intron	ENSMUSG00000029534	ProperStrand	40	chr11	35927658	35927749	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-9.1967
chr8	84846734	84846834	LINE	L1Md_F2	L1	chr8L1Md_F284845460	NonProperStrand	20	chr15	72877625	72877715	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	2	-17.2179
chr7	110341190	110341230	LINE	Lx7	L1	chr7Lx7110341063	NonProperStrand	1	chr4	108524086	108524158	protein_coding	Txndc12	intron	ENSMUSG00000028567	ProperStrand	7	1	-inf
chr9	114546584	114546714	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	chr5	17776751	17776776	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-6.1172
chr17	39844604	39844694	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr4	147243993	147244093	protein_coding	Fv1	exon	ENSMUSG00000070583	ProperStrand	1	1	-inf
chrX	136782463	136782563	lincRNA	Gm15046	intron	ENSMUSG00000086441	NonProperStrand	41	chr2	33272328	33272418	protein_coding	Zbtb34	intron	ENSMUSG00000068966	ProperStrand	29	1	-14.2623
chr14	32332540	32332811	LTR	MTD	MaLR	chr14MTD32332530	NonProperStrand	3	chr17	39848182	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-7.3534
chr16	22106593	22106683	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	chr1	133601171	133601271	protein_coding	5430435G22Rik	intron	ENSMUSG00000052688	NonProperStrand	19	1	-12.2658
chr6	125162375	125162549	LINE	L1MEd	L1	chr6L1MEd125162471	ProperStrand	31	chr6	125162299	125162483	SINE	B3	B2	chr6B3125162279	ProperStrand	16	1	-16.0618
chr6	148918084	148918174	SINE	B3	B2	chr6B3148918045	NonProperStrand	1	chr6	148918197	148918297	SINE	ID_B1	B4	chr6ID_B1148918224	NonProperStrand	1	1	-inf
chr9	50934061	50934103	LINE	L1VL2	L1	chr9L1VL250933994	ProperStrand	2	chr9	50926042	50926128	protein_coding	Btg4	exon	ENSMUSG00000032056	NonProperStrand	1	1	-inf
chr8	84695515	84696901	LINE	L1VL4	L1	chr8L1VL484695513	ProperStrand	4	chr8	84695441	84695531	LINE	L1_Mus1	L1	chr8L1_Mus184695211	ProperStrand	1	1	-inf
chr17	39847428	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	117322284	117322300	protein_coding	4833424O15Rik	intron	ENSMUSG00000033342	NonProperStrand	4	1	-3.7035
chr16	21089297	21089397	LINE	L1Md_F2	L1	chr16L1Md_F221088775	NonProperStrand	3	chr16	21089423	21089513	LINE	L1_Mus4	L1	chr16L1_Mus421089386	NonProperStrand	3	3	-inf
chr7	118883237	118883299	protein_coding	Galntl4	intron	ENSMUSG00000038296	NonProperStrand	80	chr5	142403539	142403626	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-8.1844
chr9	105468943	105469033	LINE	L1MB7	L1	chr9L1MB7105468920	ProperStrand	2	chr9	105468829	105468929	SINE	PB1D10	Alu	chr9PB1D10105468800	ProperStrand	2	2	-inf
chr2	33551091	33551191	LTR	MT2B	ERVL	chr2MT2B33551038	NonProperStrand	1	chr2	33551407	33551497	SINE	B3A	B2	chr2B3A33551395	ProperStrand	1	1	-inf
chr4	142459220	142459236	LTR	MLT1B	MaLR	chr4MLT1B142459076	NonProperStrand	1	chr9	40183475	40183501	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-inf
chr5	140300246	140300440	protein_coding	Psmg3	intron	ENSMUSG00000029551	ProperStrand	14	chr5	140261570	140300238	protein_coding	Tmem184a	utr5	ENSMUSG00000036687	ProperStrand	37	1	-15.9680
chr17	39845443	39845553	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr6	5640664	5640714	LTR	MTC	MaLR	chr6MTC5640355	ProperStrand	1	1	-inf
chr12	76879812	76879866	LTR	RMER19B	ERVK	chr12RMER19B76879741	ProperStrand	1	chr17	70963741	70963827	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr9	31349192	31353325	DNA	URR1A	MER1_type	chr9URR1A31349119	NonProperStrand	1	chr13	97247504	97247520	LTR	MER77	ERVL	chr13MER7797247240	NonProperStrand	2	1	-inf
chr3	41080793	41080893	LTR	MuRRS4-int	ERV1	chr3MuRRS4-int41080601	ProperStrand	5	chr7	120659078	120659168	protein_coding	Far1	intron	ENSMUSG00000030759	ProperStrand	49	3	-inf
chr13	6594934	6595040	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr7	109520198	109520253	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-8.5383
chr1	122357176	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr6	39402618	39402690	SINE	B1_Mus2	Alu	chr6B1_Mus239402612	ProperStrand	2	1	-16.3749
chr6	3201505	3201565	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	154692582	154692643	protein_coding	Raly	utr3	ENSMUSG00000027593	ProperStrand	47	1	-3.3357
chr2	22744838	22744925	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr8	87501535	87501592	protein_coding	Junb	exon	ENSMUSG00000052837	NonProperStrand	11	1	-10.2537
chr12	29951224	29951308	LTR	MLT1A1	MaLR	chr12MLT1A129951211	NonProperStrand	1	chr6	40331704	40331766	protein_coding	Agk	intron	ENSMUSG00000029916	ProperStrand	8	1	-inf
chr11	101763928	101764147	SINE	B1_Mur1	Alu	chr11B1_Mur1101763889	ProperStrand	3	chr11	101762295	101763935	SINE	B2_Mm2	B2	chr11B2_Mm2101762161	ProperStrand	4	3	-inf
chr1	118926809	118926920	LINE	Lx7	L1	chr1Lx7118926296	ProperStrand	27	chr9	118674951	118674985	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.5619
chr19	8724875	8724942	SINE	B3A	B2	chr19B3A8724791	NonProperStrand	14	chr17	39843411	39843518	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	2	-8.7980
chr2	42172594	42172694	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	chr11	26415792	26415882	protein_coding	Vrk2	intron	ENSMUSG00000064090	ProperStrand	15	1	-14.9523
chr17	39847491	39847700	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	147546677	147548353	protein_coding	Usp12	utr3	ENSMUSG00000029640	NonProperStrand	11	2	-3.4077
chr14	27278826	27278920	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr15	75862476	75863416	protein_coding	K230010J24Rik	intron	ENSMUSG00000075594	ProperStrand	9	1	-13.5911
chr12	16978063	16984717	protein_coding	Rock2	intron	ENSMUSG00000020580	ProperStrand	46	chr5	118703775	118703812	protein_coding	2410131K14Rik	intron	ENSMUSG00000032840	ProperStrand	127	1	-11.0523
chr7	34202494	34202658	LTR	RLTR9E	ERVK	chr7RLTR9E34202391	ProperStrand	22	chr4	41389538	41389604	protein_coding	Kif24	intron	ENSMUSG00000028438	ProperStrand	26	1	-15.7785
chr10	111009291	111009381	SINE	B3	B2	chr10B3111009282	ProperStrand	1	chr10	111009139	111009239	SINE	RSINE1	B4	chr10RSINE1111009106	ProperStrand	1	1	-inf
chr17	39847747	39847847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	55652529	55652619	protein_coding	St6gal2	utr3	ENSMUSG00000024172	NonProperStrand	4	1	-3.7035
chr17	39846952	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	168223791	168223845	LTR	MT2A	ERVL	chr2MT2A168223589	ProperStrand	1	1	-inf
chr6	125491482	125491542	LINE	Lx8	L1	chr6Lx8125491047	NonProperStrand	5	chr9	123462120	123462162	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr2	121137308	121137398	protein_coding	Ppip5k1	utr3	ENSMUSG00000033526	NonProperStrand	22	chr9	64244533	64244633	protein_coding	Megf11	intron	ENSMUSG00000036466	NonProperStrand	40	1	-14.8809
chr3	8982271	8982316	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	chr3	138459554	138459636	protein_coding	Tspan5	intron	ENSMUSG00000028152	NonProperStrand	34	1	-10.0956
chr6	4757779	4757813	lincRNA	RP23-353M17.3	exon	ENSMUSG00000093570	NonProperStrand	55	chr15	88863198	88863290	protein_coding	Mov10l1	intron	ENSMUSG00000015365	ProperStrand	151	1	-10.3453
chr2	29180085	29180118	LINE	L1_Rod	L1	chr2L1_Rod29180030	ProperStrand	2	chr17	39846847	39846919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr15	59569303	59569329	LTR	MER21B	ERV1	chr15MER21B59569144	NonProperStrand	6	chr15	35810910	35810971	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-15.2774
chr9	21820306	21820401	protein_coding	Elavl3	utr3	ENSMUSG00000003410	ProperStrand	162	chr18	74948182	74948198	protein_coding	Acaa2	intron	ENSMUSG00000036880	NonProperStrand	7	1	-14.4617
chr10	61197176	61197276	protein_coding-noncoding	Aifm2	utr5	ENSMUSG00000020085	NonProperStrand	4	chr10	61197271	61197361	protein_coding	Aifm2	intron	ENSMUSG00000020085	NonProperStrand	12	4	-inf
chr12	112993133	113000251	protein_coding	Klc1	intron	ENSMUSG00000021288	NonProperStrand	9	chr9	123462058	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr17	39846822	39846865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	73922165	73922218	LTR	MTA_Mm	MaLR	chrXMTA_Mm73922011	ProperStrand	1	1	-inf
chr17	39846861	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	152181933	152182023	processed_transcript	Gm14164	.	ENSMUSG00000068062	ProperStrand	3	1	-4.3017
chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	64671590	64671705	protein_coding	Dennd4a	intron	ENSMUSG00000053641	ProperStrand	10	1	-4.3847
chr17	32118485	32118526	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	NonProperStrand	22	chr4	155590711	155590802	protein_coding	2310042D19Rik	intron	ENSMUSG00000078486	ProperStrand	9	1	-18.0947
chr13	11553148	11553238	LINE	Lx3C	L1	chr13Lx3C11552966	ProperStrand	1	chr13	11552492	11552592	LTR	MTB	MaLR	chr13MTB11552253	ProperStrand	1	1	-inf
chr6	29627578	29627668	LINE	L1MA4	L1	chr6L1MA429627283	ProperStrand	1	chr6	29627818	29627918	Other	RMER1C	Other	chr6RMER1C29627821	NonProperStrand	1	1	-inf
chr7	111076108	111076209	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	chrX	8063777	8063867	protein_coding	Ssxb6	intron	ENSMUSG00000079702	NonProperStrand	21	1	-13.3148
chr11	83271589	83271699	protein_coding	Mmp28	intron	ENSMUSG00000020682	NonProperStrand	10	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.7312
chr14	78648023	78648113	DNA	URR1A	MER1_type	chr14URR1A78647943	NonProperStrand	1	chr5	110371044	110371062	protein_coding	Gm15446	intron	ENSMUSG00000090015	NonProperStrand	24	1	-inf
chr11	118211608	118211674	protein_coding	Timp2	intron	ENSMUSG00000017466	ProperStrand	43	chr10	58362141	58362186	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-10.7892
chr17	39846953	39847027	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	77509635	77509688	LTR	ORR1D2	MaLR	chr18ORR1D277509562	ProperStrand	1	1	-inf
chr2	143915606	143915622	Simple_repeat	(GAAA)n	Simple_repeat	chr2(GAAA)n143915540	NonProperStrand	1	chr1	38524845	38524942	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	1	-inf
chr10	23785753	23785822	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr5	38690563	38690622	protein_coding	Otop1	intron	ENSMUSG00000051596	ProperStrand	3	1	-16.4594
chr8	33885980	33886043	LINE	Lx5	L1	chr8Lx533885556	ProperStrand	1	chr3	9508714	9508795	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-inf
chr7	82748075	82748165	protein_coding-noncoding	Akap13	utr5	ENSMUSG00000066406	ProperStrand	2	chr7	82748217	82748317	protein_coding	Akap13	intron	ENSMUSG00000066406	ProperStrand	108	2	-inf
chr5	115489528	115489603	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr10	85941823	85941888	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	1	-8.4811
chr10	17153110	17153200	LTR	MTE2b	MaLR	chr10MTE2b17152990	ProperStrand	1	chr10	17153308	17153408	LTR	ORR1A3	MaLR	chr10ORR1A317153265	ProperStrand	1	1	-inf
chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr12	79684686	79684745	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-6.5260
chr18	75215478	75215583	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	chr4	133966006	133966432	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	1	-8.7376
chr1	182017348	182017422	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	chr17	27580443	27580515	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-5.2204
chr17	35055309	35055363	protein_coding	Slc44a4	intron	ENSMUSG00000007034	ProperStrand	20	chr13	43253201	43253257	protein_coding	Tbc1d7	intron	ENSMUSG00000021368	ProperStrand	34	1	-15.4099
chr8	109863273	109863335	protein_coding	Nfat5	intron	ENSMUSG00000003847	ProperStrand	41	chr13	112578191	112578282	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-4.9373
chr9	65650004	65650966	protein_coding	Zfp609	intron	ENSMUSG00000040524	NonProperStrand	165	chr15	100209641	100209670	protein_coding	RP24-73K9.3	intron	ENSMUSG00000093789	ProperStrand	22	1	-12.0255
chr14	87032955	87033055	LINE	L1Md_F2	L1	chr14L1Md_F287032592	NonProperStrand	2	chr14	87033096	87033186	SINE	B1_Mm	Alu	chr14B1_Mm87033075	NonProperStrand	2	2	-inf
chr19	32806899	32806974	SINE	B2_Mm1t	B2	chr19B2_Mm1t32806904	ProperStrand	1	chr19	32812024	32812109	SINE	ID_B1	B4	chr19ID_B132812007	NonProperStrand	1	1	-inf
chr5	146261022	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	116618011	116618097	protein_coding	St6galnac1	intron	ENSMUSG00000009588	ProperStrand	17	1	-7.5728
chr2	168200232	168200268	LINE	L1MB3	L1	chr2L1MB3168200043	ProperStrand	1	chr4	33447741	33447836	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	100	1	-inf
chr17	12196655	12196733	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr4	42932235	42932253	protein_coding	N28178	intron	ENSMUSG00000036062	NonProperStrand	1	1	-inf
chrX	151847354	151847456	LINE	L1_Mur2	L1	chrXL1_Mur2151845526	ProperStrand	2	chr17	39847611	39847627	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr3	60624541	60624596	DNA	URR1A	MER1_type	chr3URR1A60624525	ProperStrand	1	chr4	43492907	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	1	-inf
chr6	71422952	71423042	LTR	RMER4B	ERVK	chr6RMER4B71422562	ProperStrand	1	chr6	71423185	71423285	SINE	B1_Mur1	Alu	chr6B1_Mur171423199	ProperStrand	1	1	-inf
chr15	74440531	74440561	protein_coding	1700016M24Rik	intron	ENSMUSG00000022603	ProperStrand	4	chr9	40804112	40804132	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-13.1046
chr17	37050003	37050122	LTR	RLTR16	ERVK	chr17RLTR1637049636	ProperStrand	11	chr4	137942914	137942941	LTR	ORR1E	MaLR	chr4ORR1E137942902	NonProperStrand	5	2	-inf
chrX	73706156	73706246	LINE	Lx6	L1	chrXLx673706091	NonProperStrand	1	chrX	73705935	73706035	LTR	RMER17A2	ERVK	chrXRMER17A273705269	NonProperStrand	1	1	-inf
chr17	39845554	39845644	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr19	23699269	23699369	protein_coding	1700028P14Rik	intron	ENSMUSG00000033053	NonProperStrand	21	1	-4.1417
chr17	39842997	39843018	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr19	25346241	25346353	protein_coding	Kank1	intron	ENSMUSG00000032702	ProperStrand	85	1	-4.7119
chr8	71965034	71965164	LINE	Lx5	L1	chr8Lx571964940	ProperStrand	5	chr9	108112450	108112466	protein_coding	Dag1	intron	ENSMUSG00000039952	ProperStrand	2	2	-inf
chr17	39847440	39847477	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	33726446	33726465	protein_coding	Heg1	exon	ENSMUSG00000075254	NonProperStrand	5	1	-3.2379
chr11	21065944	21066034	LTR	MTB_Mm	MaLR	chr11MTB_Mm21065861	ProperStrand	1	chr11	21066289	21066389	LTR	RMER17C	ERVK	chr11RMER17C21066242	ProperStrand	1	1	-inf
chr1	150743823	150743841	LINE	Lx2	L1	chr1Lx2150743759	NonProperStrand	1	chr1	150738768	150743592	LTR	ORR1A3	MaLR	chr1ORR1A3150742205	ProperStrand	1	1	-inf
chr4	66398910	66399000	LINE	Lx5	L1	chr4Lx566398915	ProperStrand	1	chr4	66398648	66398748	LTR	RLTR9E	ERVK	chr4RLTR9E66398507	NonProperStrand	1	1	-inf
chr3	31024641	31024731	LINE	L1MB4	L1	chr3L1MB431024504	NonProperStrand	4	chr17	39847248	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr7	118114861	118115149	protein_coding	Mrvi1	intron	ENSMUSG00000005611	ProperStrand	87	chr14	63492550	63492584	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	1	-9.5055
chr8	91596099	91596154	DNA	Tigger7	MER2_type	chr8Tigger791595963	ProperStrand	1	chr17	39846747	39846829	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846452	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	19395396	19395438	Simple_repeat	(TTTC)n	Simple_repeat	chr7(TTTC)n19395318	NonProperStrand	2	2	-inf
chr6	125148876	125148934	LINE	L1MB8	L1	chr6L1MB8125148758	ProperStrand	1	chr16	35981729	35981764	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	1	-inf
chr12	101947134	101947169	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	NonProperStrand	8	chr11	105513268	105513287	protein_coding	Tanc2	intron	ENSMUSG00000053580	NonProperStrand	26	1	-17.9695
chr1	161037602	161037636	LINE	L1MEc	L1	chr1L1MEc161037551	ProperStrand	11	chr4	132310693	132310760	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-13.1868
chr7	89972415	89972455	LINE	Lx	L1	chr7Lx89971930	NonProperStrand	1	chr17	39847611	39847698	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	98839711	98839777	SINE	B2_Mm2	B2	chr15B2_Mm298839708	ProperStrand	3	chr18	35381596	35381684	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	1	-17.0662
chr7	135645229	135645329	Low_complexity	CT-rich	Low_complexity	chr7CT-rich135645187	ProperStrand	2	chr7	135645079	135645169	SINE	B1_Mm	Alu	chr7B1_Mm135645075	NonProperStrand	2	2	-inf
chr17	39846822	39846841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	52312337	52312477	protein_coding	Gm17079	intron	ENSMUSG00000090740	ProperStrand	2	2	-inf
chr17	39846352	39847048	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	50420126	50420180	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	39	-inf
chrX	102185002	102185128	SINE	B3A	B2	chrXB3A102185029	ProperStrand	4	chr19	5797982	5798001	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-10.0252
chr15	80080377	80080420	protein_coding	Smcr7l	exon	ENSMUSG00000022412	NonProperStrand	429	chr3	152234565	152234676	protein_coding	Ak5	intron	ENSMUSG00000039058	NonProperStrand	72	1	-7.7239
chr18	36647959	36648043	Low_complexity	CT-rich	Low_complexity	chr18CT-rich36647975	ProperStrand	3	chr8	25155236	25155265	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	2	-19.8687
chr10	61263272	61263294	LTR	MTD	MaLR	chr10MTD61263275	ProperStrand	1	chr11	100321057	100321089	SINE	B3A	B2	chr11B3A100321021	NonProperStrand	1	1	-inf
chr17	39846846	39846936	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	25754629	25754729	SINE	B3	B2	chr7B325754610	ProperStrand	2	1	-5.3533
chr19	5802116	5802190	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	77766402	77766430	protein_coding	Elovl5	intron	ENSMUSG00000032349	ProperStrand	59	1	-4.4712
chrX	87238369	87238394	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr7	57738794	57738829	protein_coding	Nell1	intron	ENSMUSG00000055409	ProperStrand	40	1	-10.2993
chr7	13058889	13058979	LINE	L1VL1	L1	chr7L1VL113058840	ProperStrand	1	chr7	13059111	13059211	LINE	L1_Mus1	L1	chr7L1_Mus113059092	ProperStrand	1	1	-inf
chr6	92673227	92673292	LTR	MTD	MaLR	chr6MTD92673204	ProperStrand	1	chr9	100810554	100810609	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	1	-inf
chrX	13600445	13614498	LINE	L1_Mus1	L1	chrXL1_Mus113600265	NonProperStrand	1	chr2	54466676	54466692	protein_coding	Galnt13	intron	ENSMUSG00000060988	NonProperStrand	18	1	-inf
chr6	54232386	54232485	protein_coding	Chn2	intron	ENSMUSG00000004633	ProperStrand	101	chr11	84165314	84165331	protein_coding	Acaca	intron	ENSMUSG00000020532	ProperStrand	53	1	-11.2257
chr17	39847165	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	138508355	138508429	LTR	IAPLTR2a	ERVK	chr4IAPLTR2a138508099	ProperStrand	1	1	-inf
chr17	39843865	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	119600536	119600619	protein_coding	Rpap1	intron	ENSMUSG00000034032	NonProperStrand	24	1	-4.6972
chr5	84148077	84148167	LINE	L1_Mus3	L1	chr5L1_Mus384147872	ProperStrand	1	chr5	84147751	84147851	LTR	RLTR9F	ERVK	chr5RLTR9F84147495	ProperStrand	1	1	-inf
chr17	39847034	39847164	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	18414262	18414279	protein_coding	Cttnbp2	intron	ENSMUSG00000000416	ProperStrand	3	1	-4.3017
chr11	8451020	8451063	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr7	131390440	131390473	sense_intronic	Gm15338	.	ENSMUSG00000085899	NonProperStrand	35	1	-9.0279
chr1	181813560	181813613	LTR	ORR1C2	MaLR	chr1ORR1C2181813565	ProperStrand	1	chr1	181813386	181813429	Low_complexity	GA-rich	Low_complexity	chr1GA-rich181813380	NonProperStrand	1	1	-inf
chr14	18792518	18792626	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr8	88329561	88329578	protein_coding	Itfg1	intron	ENSMUSG00000031703	ProperStrand	45	1	-10.5362
chr17	39847754	39847802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	52255346	52255423	SINE	B2_Mm1a	B2	chr11B2_Mm1a52255273	ProperStrand	1	1	-inf
chr2	83919186	83919276	LINE	L1Md_F3	L1	chr2L1Md_F383919172	ProperStrand	1	chr2	83919499	83919598	LTR	MTEb-int	MaLR	chr2MTEb-int83919381	ProperStrand	1	1	-inf
chr13	108357292	108357364	DNA	RCHARR1	MER1_type	chr13RCHARR1108356937	NonProperStrand	2	chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr3	136612601	136612701	LTR	MTD	MaLR	chr3MTD136612605	ProperStrand	1	chr3	136612271	136612361	LTR	ORR1A3	MaLR	chr3ORR1A3136612256	ProperStrand	1	1	-inf
chrX	74230077	74230326	LINE	L1_Mm	L1	chrXL1_Mm74229343	ProperStrand	5	chr9	123462126	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chrX	78281486	78281586	LINE	L1Md_F2	L1	chrXL1Md_F278280610	ProperStrand	1	chrX	78281741	78281831	LINE	L1Md_F2	L1	chrXL1Md_F278281705	NonProperStrand	1	1	-inf
chr5	33512649	33512739	DNA	Charlie25	MER1_type	chr5Charlie2533512493	ProperStrand	21	chr5	33516215	33517484	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	2	-17.5712
chr11	119857446	119857922	protein_coding	Baiap2	exon	ENSMUSG00000025372	ProperStrand	75	chr11	119872240	119872266	protein_coding	Aatk	exon	ENSMUSG00000025375	NonProperStrand	61	1	-11.5404
chr1	156819909	156828165	LINE	L1Md_F2	L1	chr1L1Md_F2156823470	NonProperStrand	3	chr1	156817830	156819909	LTR	MTEb	MaLR	chr1MTEb156819213	ProperStrand	2	2	-inf
chr1	119736138	119736207	LINE	L1Md_F2	L1	chr1L1Md_F2119735413	ProperStrand	4	chr13	58127397	58127437	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	1	-15.1600
chr14	18270362	18270429	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	56	chr7	30107605	30107662	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	NonProperStrand	39	1	-13.0315
chr8	31149862	31149894	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr17	70963679	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-5.7171
chr4	84355008	84355102	LINE	Lx5	L1	chr4Lx584354789	NonProperStrand	1	chr4	84355101	84355150	LINE	Lx5	L1	chr4Lx584355026	NonProperStrand	1	1	-inf
chr18	64964984	64965097	LINE	L1ME2	L1	chr18L1ME264964804	ProperStrand	1	chr12	110626024	110626882	LTR	MLT1A1	MaLR	chr12MLT1A1110626852	NonProperStrand	1	1	-inf
chr4	107842603	107842703	protein_coding-noncoding	Echdc2	utr3	ENSMUSG00000028601	ProperStrand	3	chr4	107842512	107842602	protein_coding	Echdc2	intron	ENSMUSG00000028601	ProperStrand	17	2	-20.2353
chrX	94189192	94189298	LINE	L1VL2	L1	chrXL1VL294188912	ProperStrand	2	chrX	94189288	94189404	Simple_repeat	(TTTC)n	Simple_repeat	chrX(TTTC)n94189309	NonProperStrand	2	2	-inf
chr17	39846870	39846944	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	84569515	84569602	pseudogene	Gm12419	.	ENSMUSG00000080303	ProperStrand	1	1	-inf
chr2	122028882	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	chr8	70895757	70895887	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-11.4338
chr15	96074095	96074111	lincRNA	2610037D02Rik	intron	ENSMUSG00000086809	ProperStrand	3	chr12	109558594	109558714	protein_coding	Hhipl1	intron	ENSMUSG00000021260	ProperStrand	179	1	-16.2015
chr9	123461935	123461974	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	47707905	47708016	protein_coding	Casp3	intron	ENSMUSG00000031628	NonProperStrand	6	2	-9.1913
chr15	93244679	93247980	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	chr4	11401112	11401674	protein_coding	Gm17283	intron	ENSMUSG00000067549	ProperStrand	7	5	-20.0671
chr2	130108183	130108283	protein_coding-noncoding	Idh3b	utr3	ENSMUSG00000027406	NonProperStrand	1	chr2	130107821	130107911	protein_coding	Idh3b	intron	ENSMUSG00000027406	NonProperStrand	1	1	-inf
chr16	90247308	90247414	protein_coding	Scaf4	intron	ENSMUSG00000022983	ProperStrand	134	chr19	46454776	46454793	protein_coding	Actr1a	exon	ENSMUSG00000025228	NonProperStrand	20	1	-12.6378
chr15	38056459	38056559	LINE	Lx2B	L1	chr15Lx2B38055670	ProperStrand	3	chr15	38056694	38056784	LINE	Lx2B	L1	chr15Lx2B38056699	ProperStrand	7	3	-inf
chr5	146261157	146261202	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	145128290	145128345	protein_coding	Gm13225	utr3	ENSMUSG00000078503	NonProperStrand	18	1	-7.4564
chr17	39843691	39847626	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	39843903	39848167	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	825	-inf
chr13	97190561	97190587	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr18	12196537	12197230	protein_coding	6030446N20Rik	intron	ENSMUSG00000049411	ProperStrand	38	1	-6.0179
chr12	78350926	78351007	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr10	89699219	89699249	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-4.3706
chr17	39844018	39844071	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr11	106264067	106264205	protein_coding	Ern1	intron	ENSMUSG00000020715	ProperStrand	17	3	-14.9312
chr9	40233773	40233812	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	chr15	37324609	37324674	protein_coding	Ncald	intron	ENSMUSG00000051359	NonProperStrand	16	2	-17.0528
chr13	112578199	112578266	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr19	56961671	56961692	protein_coding	Vwa2	intron	ENSMUSG00000025082	NonProperStrand	4	1	-9.7793
chr5	67051250	67051280	antisense	Gm16832	.	ENSMUSG00000087601	NonProperStrand	1	chr11	88851825	88851899	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	1	-inf
chr11	101442434	101442777	protein_coding	Nbr1	utr3	ENSMUSG00000017119	ProperStrand	27	chr11	101445282	101445310	protein_coding	Tmem106a	intron	ENSMUSG00000034947	ProperStrand	25	1	-15.4190
chr3	14576704	14576721	LINE	Lx5	L1	chr3Lx514575408	ProperStrand	6	chr5	137307367	137307386	protein_coding	Emid2	intron	ENSMUSG00000004415	ProperStrand	82	1	-16.1815
chr17	39845358	39845406	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr13	95639444	95639551	Low_complexity	GA-rich	Low_complexity	chr13GA-rich95639365	NonProperStrand	1	1	-inf
chr3	58576869	58585306	lincRNA	4930593A02Rik	intron	ENSMUSG00000087019	ProperStrand	27	chr9	45948627	45948651	protein_coding	Sik3	intron	ENSMUSG00000034135	NonProperStrand	65	1	-13.4796
chr2	31782923	31782959	protein_coding	Lamc3	intron	ENSMUSG00000026840	ProperStrand	74	chr5	139775337	139775363	protein_coding	Adap1	intron	ENSMUSG00000056413	ProperStrand	64	1	-11.4706
chr7	109520586	109520631	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr7	19706423	19706485	protein_coding	Fbxo46	intron	ENSMUSG00000050428	NonProperStrand	48	1	-10.2903
chr14	121918274	121918321	LTR	IAPLTR2a	ERVK	chr14IAPLTR2a121918194	NonProperStrand	1	chr14	121916262	121916336	LTR	MTEa	MaLR	chr14MTEa121915943	ProperStrand	2	1	-inf
chr9	8241398	8241441	protein_coding	1700128F08Rik	utr3	ENSMUSG00000031998	ProperStrand	1	chr7	98237645	98237758	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-inf
chr13	21787550	21787635	LINE	L1MEg2	L1	chr13L1MEg221787566	NonProperStrand	3	chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr4	155309451	155309541	LTR	RMER17A	ERVK	chr4RMER17A155309465	ProperStrand	3	chr4	155309313	155309413	LTR	RMER4B	ERVK	chr4RMER4B155309017	NonProperStrand	3	3	-inf
chr16	35981687	35981802	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr6	136603429	136603466	protein_coding	Plbd1	intron	ENSMUSG00000030214	NonProperStrand	39	1	-10.9866
chr5	146261153	146261207	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	86333947	86333986	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	81	1	-4.4853
chr2	174262364	174262421	protein_coding	Ctsz	intron	ENSMUSG00000016256	NonProperStrand	6	chr16	11586791	11586843	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-13.8103
chrX	20639223	20639323	protein_coding-noncoding	Zfp182	utr3	ENSMUSG00000054737	NonProperStrand	9	chrX	20639138	20639228	protein_coding	Zfp182	utr5	ENSMUSG00000054737	NonProperStrand	10	4	-inf
chr3	57003020	57003110	LINE	L1_Mus4	L1	chr3L1_Mus457002977	ProperStrand	1	chr3	57002869	57002969	LINE	Lx5	L1	chr3Lx557000000	NonProperStrand	1	1	-inf
chr17	39846658	39846720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	160969374	160969447	LTR	ORR1B2	MaLR	chr2ORR1B2160969379	NonProperStrand	4	1	-3.6552
chr9	92574812	92574914	DNA	Tigger1	MER2_type	chr9Tigger192574476	NonProperStrand	2	chr7	14620182	14620218	LTR	RLTR10C	ERVK	chr7RLTR10C14619986	ProperStrand	1	1	-inf
chr2	152781263	152781286	LINE	Lx5	L1	chr2Lx5152781240	ProperStrand	1	chr17	39847348	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	40840416	40840446	LINE	L1Md_T	L1	chr17L1Md_T40836990	ProperStrand	2	chr1	158472694	158472802	LINE	Lx4B	L1	chr1Lx4B158472356	ProperStrand	2	2	-inf
chr1	4312001	4312101	LINE	L1_Mur3	L1	chr1L1_Mur34311871	NonProperStrand	1	chr1	4311726	4311816	LINE	L1_Mus1	L1	chr1L1_Mus14309034	NonProperStrand	1	1	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr14	52216409	52216437	protein_coding	Gm5622	intron	ENSMUSG00000079244	NonProperStrand	57	1	-7.9800
chr19	10589946	10589997	protein_coding	Sdhaf2	intron	ENSMUSG00000024668	NonProperStrand	5	chr17	33816845	33816927	protein_coding	Hnrnpm	intron	ENSMUSG00000059208	NonProperStrand	92	1	-16.3305
chr8	127153104	127153194	LTR	RLTR11A	ERVK	chr8RLTR11A127152990	NonProperStrand	1	chr8	127152892	127152992	SINE	PB1D10	Alu	chr8PB1D10127152892	NonProperStrand	1	1	-inf
chr17	56331280	56331391	protein_coding	Dpp9	intron	ENSMUSG00000001229	NonProperStrand	214	chr3	32339991	32340007	protein_coding	Pik3ca	intron	ENSMUSG00000027665	ProperStrand	5	1	-14.6445
chr3	138747264	138747354	DNA	Tigger14a	MER2_type	chr3Tigger14a138747215	ProperStrand	1	chr3	138747389	138747489	LTR	MLT1D	MaLR	chr3MLT1D138747376	NonProperStrand	1	1	-inf
chr13	97190542	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr9	22003687	22003743	protein_coding	Zfp872	intron	ENSMUSG00000074472	ProperStrand	9	1	-8.9531
chr10	42213074	42213174	LTR	LTR48	ERV1	chr10LTR4842213008	ProperStrand	2	chr10	42213234	42213324	misc_RNA	7SK	.	ENSMUSG00000087891	ProperStrand	3	2	-inf
chr17	39843667	39843707	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr7	107560482	107560547	protein_coding	C2cd3	intron	ENSMUSG00000047248	ProperStrand	36	1	-3.4802
chr11	69669778	69669888	protein_coding	Tnk1	utr5	ENSMUSG00000001583	ProperStrand	269	chr9	110281285	110281330	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-4.6247
chr5	30060676	30060776	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	chr4	66583101	66583191	protein_coding	Tlr4	intron	ENSMUSG00000039005	NonProperStrand	3	1	-19.8679
chr11	6181893	6181983	LTR	RLTR20A	ERVK	chr11RLTR20A6181876	ProperStrand	3	chr11	6181775	6181875	LTR	RMER16	ERVK	chr11RMER166181797	NonProperStrand	1	1	-inf
chr2	22904478	22904551	LTR	RMER19C	ERVK	chr2RMER19C22904162	ProperStrand	2	chr2	22904120	22904142	SINE	B1_Mur3	Alu	chr2B1_Mur322904084	ProperStrand	1	1	-inf
chr3	123507936	123508020	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr2	168486330	168486380	protein_coding	Atp9a	intron	ENSMUSG00000027546	ProperStrand	28	1	-14.0156
chr17	39848036	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	122180604	122180641	protein_coding	Shf	intron	ENSMUSG00000033256	ProperStrand	2	1	-5.4040
chr11	61560322	61560417	protein_coding	Prpsap2	intron	ENSMUSG00000020528	ProperStrand	74	chr17	84800147	84800175	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	1	-9.5838
chr10	103909795	103909895	DNA	MER58A	MER1_type	chr10MER58A103909815	ProperStrand	1	chr10	103909456	103909546	LTR	ERVL-E-int	ERVL	chr10ERVL-E-int103909330	ProperStrand	1	1	-inf
chr11	121309166	121309183	protein_coding	Fn3k	intron	ENSMUSG00000025175	NonProperStrand	1	chr7	139177043	139177180	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-inf
chr17	39846849	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	104938612	104938667	pseudogene	Gm5656	.	ENSMUSG00000090478	ProperStrand	2	1	-5.3533
chr6	39603994	39604300	protein_coding	Braf	intron	ENSMUSG00000002413	ProperStrand	51	chr6	39603874	39603975	pseudogene	Fth-ps2	.	ENSMUSG00000091313	ProperStrand	2	2	-inf
chr11	62552550	62552620	LINE	L1M2	L1	chr11L1M262551810	NonProperStrand	43	chr17	47686380	47686436	protein_coding	Ccnd3	intron	ENSMUSG00000034165	NonProperStrand	31	1	-14.0347
chr11	121635876	121635912	LINE	L1MC1	L1	chr11L1MC1121635119	ProperStrand	2	chr1	89847206	89847323	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	1	-17.2514
chr13	35992005	35992125	protein_coding	Rpp40	intron	ENSMUSG00000021418	ProperStrand	11	chr8	72321052	72321074	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	1	-15.6064
chr2	101701588	101701624	protein_coding	Prr5l	intron	ENSMUSG00000032841	NonProperStrand	22	chr10	127243498	127243524	protein_coding	Rdh16	intron	ENSMUSG00000069456	NonProperStrand	9	1	-18.0947
chr8	114797543	114797633	LINE	L1MB8	L1	chr8L1MB8114796964	ProperStrand	5	chr8	114797667	114797767	SINE	B3A	B2	chr8B3A114797674	ProperStrand	3	3	-inf
chr17	39846660	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	135614822	135614838	protein_coding	Serpina7	utr3	ENSMUSG00000031271	ProperStrand	1	1	-inf
chr11	69695383	69695473	protein_coding	Acap1	intron	ENSMUSG00000001588	NonProperStrand	2	chr9	123461887	123461987	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr7	86054086	86054176	protein_coding-noncoding	Aen	utr5	ENSMUSG00000030609	NonProperStrand	1	chr7	86053975	86054075	protein_coding	Aen	utr3	ENSMUSG00000030609	NonProperStrand	1	1	-inf
chr7	28012424	28014079	SINE	ID_B1	B4	chr7ID_B128013975	NonProperStrand	2	chr7	28007400	28012342	protein_coding	Itpkc	intron	ENSMUSG00000003752	ProperStrand	5	2	-inf
chr12	78350924	78351015	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr2	9918025	9918074	protein_coding	Taf3	intron	ENSMUSG00000025782	NonProperStrand	8	1	-9.9985
chr5	70812415	70812505	LINE	L1_Mur2	L1	chr5L1_Mur270811467	NonProperStrand	1	chr5	70812706	70812806	LINE	Lx4B	L1	chr5Lx4B70812725	ProperStrand	1	1	-inf
chr17	39846759	39846816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	72432820	72432919	LTR	RLTR19-int	ERVK	chr6RLTR19-int72432754	ProperStrand	4	1	-3.6552
chr15	8501515	8501617	LTR	IAPEz-int	ERVK	chr15IAPEz-int8501468	ProperStrand	1	chr15	8501713	8501803	LTR	IAPEz-int	ERVK	chr15IAPEz-int8501588	ProperStrand	1	1	-inf
chr4	132492113	132492203	SINE	B1_Mur3	Alu	chr4B1_Mur3132492111	ProperStrand	2	chr4	132492312	132492412	SINE	B3A	B2	chr4B3A132492278	ProperStrand	1	1	-inf
chr6	94671168	94671206	LINE	Lx9	L1	chr6Lx994670850	ProperStrand	3	chr11	106154120	106154169	LTR	IAPLTR1a_Mm	ERVK	chr11IAPLTR1a_Mm106154025	NonProperStrand	1	1	-inf
chr9	72664264	72664344	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	chr5	113408814	113408831	protein_coding	Adrbk2	intron	ENSMUSG00000042249	ProperStrand	31	1	-9.9830
chr11	51737899	51737923	SINE	B4	B4	chr11B451737897	NonProperStrand	1	chr9	123462124	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	116189788	116201267	protein_coding-noncoding	Ric3	utr3	ENSMUSG00000048330	ProperStrand	16	chr7	116192403	116210774	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	6	-20.8729
chrX	38443464	38443554	LINE	Lx9	L1	chrXLx938442871	NonProperStrand	2	chr1	72244299	72244399	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-18.6719
chr9	21680874	21680936	SINE	ID_B1	B4	chr9ID_B121680891	ProperStrand	1	chr9	21680769	21680824	SINE	PB1D9	Alu	chr9PB1D921680746	ProperStrand	1	1	-inf
chr13	60007882	60007982	LINE	Lx8	L1	chr13Lx860007644	NonProperStrand	1	chr13	60008151	60008241	LINE	Lx8	L1	chr13Lx860008099	NonProperStrand	1	1	-inf
chr16	31531628	31531718	DNA	MER45B	Tip100	chr16MER45B31531649	NonProperStrand	1	chr16	31531835	31531935	SINE	B1_Mus2	Alu	chr16B1_Mus231531816	NonProperStrand	1	1	-inf
chr18	66459251	66459341	lincRNA	Gm15958	intron	ENSMUSG00000085055	ProperStrand	5	chr9	78175388	78175488	protein_coding	Omt2b	utr5	ENSMUSG00000038750	NonProperStrand	30	1	-18.5676
chr17	4082720	4082752	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	33450856	33450979	protein_coding	Lmx1b	intron	ENSMUSG00000038765	ProperStrand	38	1	-8.5769
chr6	134224292	134224382	LINE	L1ME1	L1	chr6L1ME1134224200	ProperStrand	1	chr17	39846409	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	95390240	95390342	LTR	RMER19B	ERVK	chr11RMER19B95389809	NonProperStrand	2	chr11	95389704	95389752	SINE	B3	B2	chr11B395389693	NonProperStrand	1	1	-inf
chr13	21780509	21780561	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr4	46451273	46451297	LTR	RMER10B	ERVL	chr4RMER10B46451269	ProperStrand	1	1	-inf
chr17	39846889	39846967	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	104850806	104850873	Simple_repeat	(GGGA)n	Simple_repeat	chr5(GGGA)n104850765	NonProperStrand	1	1	-inf
chrX	113186080	113186180	LINE	L1MC	L1	chrXL1MC113186027	ProperStrand	1	chrX	113186312	113186402	LINE	Lx2B	L1	chrXLx2B113186325	NonProperStrand	1	1	-inf
chr16	4201885	4201977	protein_coding	Crebbp	intron	ENSMUSG00000022521	ProperStrand	81	chr3	127509012	127509042	protein_coding	Tifa	intron	ENSMUSG00000046688	NonProperStrand	1	1	-inf
chr4	125430457	125430547	LINE	Lx	L1	chr4Lx125427952	ProperStrand	1	chr17	39847827	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	57134727	57136749	protein_coding	Tomm70a	intron	ENSMUSG00000022752	ProperStrand	50	chr6	88260203	88260260	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	1	-9.2749
chr17	39847665	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	141314713	141314748	LTR	ORR1D2	MaLR	chr5ORR1D2141314559	NonProperStrand	1	1	-inf
chr10	40258546	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	149120029	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	ProperStrand	14	2	-13.2717
chr9	17812787	17812877	LINE	Lx8	L1	chr9Lx817812264	NonProperStrand	1	chr9	17812909	17813009	LTR	MTD	MaLR	chr9MTD17812873	ProperStrand	1	1	-inf
chr9	78367215	78367741	SINE	B2_Mm1t	B2	chr9B2_Mm1t78367196	NonProperStrand	39	chr9	110281305	110281337	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.4261
chr11	68848109	68848209	protein_coding-noncoding	1500010J02Rik	utr5	ENSMUSG00000020898	NonProperStrand	1	chr11	68848301	68848391	protein_coding	1500010J02Rik	intron	ENSMUSG00000020898	NonProperStrand	6	1	-inf
chr15	55105331	55105348	LINE	Lx5	L1	chr15Lx555105298	ProperStrand	1	chr9	123462079	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	150326718	150326749	LINE	L1Md_F2	L1	chr2L1Md_F2150326649	ProperStrand	1	chr13	109637928	109637949	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-inf
chr2	11765405	11765471	LTR	RMER20B	ERVK	chr2RMER20B11764961	NonProperStrand	1	chr9	123461930	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	121570689	121572059	SINE	ID_B1	B4	chr5ID_B1121570637	NonProperStrand	11	chr5	114852016	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-12.7679
chr5	146261021	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	130172930	130172979	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	46	1	-5.5811
chr17	39847244	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	50194097	50194187	protein_coding-noncoding	Hnrnph1	utr5	ENSMUSG00000007850	NonProperStrand	1	1	-inf
chr3	96559961	96560014	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	chr13	44869605	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.9952
chr4	32321688	32321751	LINE	L2	L2	chr4L232321677	ProperStrand	2	chr4	32402096	32402131	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	1	-18.0731
chr17	39847736	39847802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	147503487	147508821	protein_coding	Fgd1	intron	ENSMUSG00000025265	NonProperStrand	3	1	-4.3512
chr14	55263926	55264016	protein_coding-noncoding	Acin1	utr3	ENSMUSG00000022185	ProperStrand	1	chr14	55263819	55263919	protein_coding	Acin1	intron	ENSMUSG00000022185	ProperStrand	2	1	-inf
chr17	39847173	39847286	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	140870622	140870641	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	6	-5.4201
chr17	39847181	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	56115188	56115216	lincRNA	Gm17397	exon	ENSMUSG00000091371	ProperStrand	7	1	-3.6430
chr7	101951778	101951868	LINE	L1_Mus3	L1	chr7L1_Mus3101951508	NonProperStrand	3	chr7	101951866	101951966	LINE	L1_Mus3	L1	chr7L1_Mus3101951859	ProperStrand	8	3	-inf
chr17	39848182	39848208	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	25382734	25382865	protein_coding	Ethe1	intron	ENSMUSG00000064254	ProperStrand	7	1	-5.4467
chr17	39847531	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	93304986	93305093	SINE	B3	B2	chr13B393304966	ProperStrand	1	1	-inf
chr15	97698930	97701106	protein_coding	Vdr	intron	ENSMUSG00000022479	ProperStrand	5	chr3	108554609	108554658	protein_coding	Aknad1	exon	ENSMUSG00000049565	NonProperStrand	220	2	-21.6575
chr5	146261020	146261040	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	29556702	29556773	protein_coding	Tnpo3	intron	ENSMUSG00000012535	ProperStrand	28	1	-6.5650
chr6	4884938	4885028	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	NonProperStrand	11	chr12	76444554	76444654	protein_coding	Rhoj	intron	ENSMUSG00000046768	ProperStrand	46	3	-inf
chr3	150225269	150225359	LINE	L1Md_F3	L1	chr3L1Md_F3150225244	ProperStrand	1	chr3	150225157	150225257	LINE	Lx3A	L1	chr3Lx3A150224973	NonProperStrand	1	1	-inf
chr17	33952242	33952290	protein_coding	Kank3	intron	ENSMUSG00000042099	NonProperStrand	107	chr11	117144878	117144917	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-9.0104
chr13	36426266	36426366	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	chr5	92258146	92258236	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	3	-14.5184
chr11	109011646	109011872	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	97190541	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	55	-inf
chr17	39846647	39846702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	16753241	16753258	protein_coding	Spag6	utr3	ENSMUSG00000022783	NonProperStrand	5	1	-3.1907
chr16	21809449	21809539	LTR	MTE2b	MaLR	chr16MTE2b21809180	ProperStrand	1	chr16	21805409	21805509	lincRNA	1300002E11Rik	exon	ENSMUSG00000086651	ProperStrand	5	1	-inf
chr17	39846408	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	100420022	100420040	protein_coding	Man1a2	intron	ENSMUSG00000008763	NonProperStrand	2	1	-5.3533
chr3	106541791	106541863	LINE	L1Md_F	L1	chr3L1Md_F106540099	NonProperStrand	1	chr2	125757538	125758166	protein_coding	Galk2	intron	ENSMUSG00000027207	NonProperStrand	12	1	-inf
chr11	35556434	35556534	LTR	ORR1A2-int	MaLR	chr11ORR1A2-int35555750	NonProperStrand	1	chr11	35556703	35556793	LTR	ORR1A2	MaLR	chr11ORR1A235556646	NonProperStrand	1	1	-inf
chr5	149214964	149215039	SINE	B1_Mur3	Alu	chr5B1_Mur3149214950	ProperStrand	1	chr5	149209686	149209758	protein_coding	Slc7a1	intron	ENSMUSG00000041313	NonProperStrand	36	1	-inf
chr6	93821572	93821672	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr8	70071188	70071540	protein_coding	Nat3	intron	ENSMUSG00000056426	ProperStrand	38	1	-7.1929
chr1	100180176	100180223	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr9	123461822	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	25	-inf
chr19	8749961	8750002	protein_coding	Chrm1	intron	ENSMUSG00000032773	ProperStrand	10	chr13	97190546	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.7312
chr13	80022660	80022760	LINE	L1_Mur3	L1	chr13L1_Mur380021769	NonProperStrand	1	chr13	80022854	80022944	LINE	L1_Mur3	L1	chr13L1_Mur380022833	NonProperStrand	1	1	-inf
chr17	39847780	39847829	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	66539850	66539880	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int66536019	ProperStrand	2	1	-5.4040
chr13	21911347	21911385	LTR	RLTR4_Mm	ERV1	chr13RLTR4_Mm21911324	ProperStrand	5	chr5	107569249	107569277	protein_coding	Tgfbr3	intron	ENSMUSG00000029287	ProperStrand	21	1	-19.1315
chr12	82198543	82198639	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	chr2	122028883	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	1	-10.7322
chr1	119461432	119461451	LINE	Lx2B	L1	chr1Lx2B119461299	ProperStrand	7	chr5	142904694	142905263	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-12.6982
chr2	153212845	153212953	protein_coding	Asxl1	intron	ENSMUSG00000042548	ProperStrand	28	chr5	17776749	17776790	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-11.6457
chr17	39846851	39846952	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	87997490	87997516	SINE	B1F1	Alu	chr6B1F187997416	NonProperStrand	4	1	-3.6552
chr2	101788050	101788077	LINE	Lx8	L1	chr2Lx8101787900	ProperStrand	1	chr17	39847042	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	81719814	81719904	protein_coding-noncoding	Aco2	utr5	ENSMUSG00000022477	NonProperStrand	3	chr15	81719677	81719777	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	3	-inf
chr10	40883908	40883958	Simple_repeat	(TTC)n	Simple_repeat	chr10(TTC)n40883515	ProperStrand	2	chr18	35554489	35554565	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-15.8773
chr4	11045261	11045361	LINE	L1M2	L1	chr4L1M211044943	NonProperStrand	1	chr4	11045365	11045455	LINE	L1M2	L1	chr4L1M211045369	NonProperStrand	1	1	-inf
chr13	21783341	21783399	LINE	L1MC4a	L1	chr13L1MC4a21782980	NonProperStrand	5	chr17	39846931	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr16	23108954	23109020	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr2	112532462	112532548	protein_coding	Ryr3	intron	ENSMUSG00000057378	NonProperStrand	77	1	-9.4090
chr17	27848013	27851693	protein_coding	Spdef	utr3	ENSMUSG00000024215	NonProperStrand	15	chr5	124868223	124868313	protein_coding	Sbno1	intron	ENSMUSG00000038095	NonProperStrand	18	3	-inf
chr17	39845440	39845506	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr3	40702673	40702740	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	NonProperStrand	16	1	-4.6708
chr17	39843496	39843519	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	29621654	29621773	protein_coding	Gm13547	utr3	ENSMUSG00000075425	ProperStrand	13	1	-5.4538
chr11	58331728	58331783	LINE	L1_Mus2	L1	chr11L1_Mus258330691	NonProperStrand	1	chr17	39847784	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr2	71832025	71832137	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-8.2637
chr18	17193386	17193476	lincRNA	1700001G01Rik	intron	ENSMUSG00000087170	NonProperStrand	8	chr9	26898691	26898791	protein_coding	Ncapd3	intron	ENSMUSG00000035024	ProperStrand	3	1	-inf
chr3	41364499	41364599	protein_coding	Phf17	intron	ENSMUSG00000025764	NonProperStrand	26	chr3	41365536	41365626	protein_coding	Phf17	intron	ENSMUSG00000025764	ProperStrand	3	1	-inf
chr7	12930813	12930852	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr9	50884846	50884929	protein_coding	Layn	intron	ENSMUSG00000060594	NonProperStrand	15	1	-14.2667
chr13	54093724	54093814	LTR	MYSERV6-int	ERVK	chr13MYSERV6-int54091295	NonProperStrand	5	chr13	54094236	54094336	LTR	MYSERV6-int	ERVK	chr13MYSERV6-int54094170	NonProperStrand	1	1	-inf
chr8	102865418	102865528	LTR	MLT1A1-int	MaLR	chr8MLT1A1-int102865373	ProperStrand	15	chr9	123462079	123462104	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr10	18576728	18576846	protein_coding	Perp	utr3	ENSMUSG00000019851	ProperStrand	18	chr9	7994945	7994980	protein_coding	Yap1	intron	ENSMUSG00000053110	ProperStrand	74	1	-14.0462
chr3	85975040	85975140	Other	RMER1B	Other	chr3RMER1B85975033	ProperStrand	2	chr3	85976033	85976123	SINE	B1_Mus2	Alu	chr3B1_Mus285976050	NonProperStrand	2	2	-inf
chr2	121434026	121434821	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	chr7	96527732	96527822	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-8.3509
chr17	39843400	39843448	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	96005630	96005668	protein_coding	Ttll6	intron	ENSMUSG00000038756	NonProperStrand	44	1	-3.1134
chr7	92740022	92740122	LINE	L1_Mur3	L1	chr7L1_Mur392739827	NonProperStrand	1	chr7	92740161	92740252	LINE	Lx2	L1	chr7Lx292740102	NonProperStrand	2	1	-inf
chr17	39847636	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	23745169	23745305	SINE	B1_Mur1	Alu	chr13B1_Mur123745192	NonProperStrand	5	1	-3.2379
chr4	147754855	147754892	SINE	B3A	B2	chr4B3A147754769	NonProperStrand	1	chr19	27996685	27996711	protein_coding	Rfx3	intron	ENSMUSG00000040929	ProperStrand	67	1	-inf
chr13	9834304	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr13	37979650	37979736	protein_coding	Rreb1	intron	ENSMUSG00000039087	NonProperStrand	39	1	-9.9751
chr7	47188431	47188655	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr7	47188316	47188457	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	19	-21.3984
chr2	90707009	90708175	SINE	ID_B1	B4	chr2ID_B190706966	ProperStrand	2	chr2	90696707	90697901	protein_coding	Mtch2	intron	ENSMUSG00000027282	ProperStrand	13	2	-inf
chr7	107289928	107290018	LTR	MurERV4-int	ERVK	chr7MurERV4-int107288890	ProperStrand	1	chr8	117237651	117237751	protein_coding	Wwox	intron	ENSMUSG00000004637	NonProperStrand	44	1	-inf
chr13	29471782	29471832	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr4	148562668	148562760	protein_coding	Kif1b	intron	ENSMUSG00000063077	NonProperStrand	70	2	-12.2317
chr2	119923576	119923610	protein_coding	Ehd4	intron	ENSMUSG00000027293	NonProperStrand	78	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.9952
chr17	39847159	39847194	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	69094490	69094515	Simple_repeat	(TCTG)n	Simple_repeat	chr8(TCTG)n69094427	ProperStrand	3	1	-5.4882
chr17	39846823	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	112287986	112288101	Simple_repeat	(TC)n	Simple_repeat	chr5(TC)n112287981	ProperStrand	4	1	-3.6552
chr8	71715160	71715250	LINE	L1_Mus1	L1	chr8L1_Mus171714593	NonProperStrand	2	chr8	71715648	71715748	SINE	B2_Mm2	B2	chr8B2_Mm271715654	NonProperStrand	2	2	-inf
chr13	92856893	92856952	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	NonProperStrand	97	chr1	172091262	172091311	protein_coding	Uap1	intron	ENSMUSG00000026670	NonProperStrand	7	1	-15.4881
chr6	60454060	60454150	LINE	Lx3B	L1	chr6Lx3B60454076	ProperStrand	2	chr6	60454178	60454278	Low_complexity	GA-rich	Low_complexity	chr6GA-rich60454200	ProperStrand	2	2	-inf
chr8	91087114	91087144	protein_coding	Nkd1	intron	ENSMUSG00000031661	ProperStrand	33	chr9	40803629	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-8.6386
chr15	69337322	69337412	LINE	L1_Mus2	L1	chr15L1_Mus269337154	NonProperStrand	1	chr15	69337574	69337674	LTR	RMER17D2	ERVK	chr15RMER17D269337542	ProperStrand	1	1	-inf
chr17	39847354	39847383	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	119105447	119105486	SINE	B1_Mus2	Alu	chr2B1_Mus2119105397	ProperStrand	1	1	-inf
chr7	4497621	4497654	protein_coding	Syt5	intron	ENSMUSG00000004961	ProperStrand	9	chr13	97190561	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.9531
chr4	9625860	9625960	LINE	L1_Mus1	L1	chr4L1_Mus19625285	ProperStrand	6	chr17	39847880	39847970	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-5.2646
chr2	104471814	104493998	protein_coding	Cstf3	intron	ENSMUSG00000027176	NonProperStrand	10	chr2	154381105	154383840	protein_coding	Necab3	intron	ENSMUSG00000027489	ProperStrand	8	1	-19.7993
chr8	94823165	94823716	SINE	RSINE1	B4	chr8RSINE194823608	ProperStrand	7	chr14	52237292	52237326	protein_coding	Gm5622	intron	ENSMUSG00000079244	NonProperStrand	57	1	-16.5751
chr1	134304789	134304853	LTR	MTE-int	MaLR	chr1MTE-int134304313	ProperStrand	2	chr9	123462122	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847160	39847332	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	120347655	120348056	lincRNA	Gm16755	exon	ENSMUSG00000086218	ProperStrand	60	6	-4.9385
chr7	120641700	120643080	LTR	ORR1E	MaLR	chr7ORR1E120642882	ProperStrand	1	chr2	165278285	165278385	protein_coding	Slc13a3	intron	ENSMUSG00000018459	ProperStrand	44	1	-inf
chr6	3201470	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr1	59692553	59692586	SINE	B1_Mur2	Alu	chr1B1_Mur259692558	ProperStrand	4	1	-8.3508
chr1	157342608	157342698	DNA	URR1A	MER1_type	chr1URR1A157342632	NonProperStrand	1	chr1	157342377	157342477	LTR	ERVL-B4-int	ERVL	chr1ERVL-B4-int157342216	ProperStrand	1	1	-inf
chr5	110755849	110755927	protein_coding	Pole	intron	ENSMUSG00000007080	NonProperStrand	46	chr8	123655869	123655924	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-7.4622
chr7	125643706	125643730	LTR	ORR1D2	MaLR	chr7ORR1D2125643709	ProperStrand	2	chr7	125643550	125643679	LTR	RLTR18	ERVK	chr7RLTR18125643145	NonProperStrand	2	2	-inf
chr5	146757418	146757472	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int146755474	ProperStrand	3	chr9	123461802	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr1	189004592	189004665	protein_coding	Spata17	intron	ENSMUSG00000026611	ProperStrand	80	chr3	108323527	108323561	protein_coding	5330417C22Rik	intron	ENSMUSG00000040412	NonProperStrand	43	1	-12.1164
chr19	37162558	37162624	protein_coding	Cpeb3	intron	ENSMUSG00000039652	ProperStrand	70	chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.8241
chr15	102096463	102096492	SINE	B4	B4	chr15B4102096467	NonProperStrand	4	chr15	102095638	102095706	SINE	RSINE1	B4	chr15RSINE1102095614	ProperStrand	1	1	-inf
chr17	39847184	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	110046508	110046543	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	3	1	-5.4882
chr10	23567958	23568048	LINE	Lx8	L1	chr10Lx823567805	ProperStrand	1	chr10	23621893	23621993	protein_coding	Vnn1	intron	ENSMUSG00000037440	NonProperStrand	1	1	-inf
chr9	44338919	44339019	LTR	MTD	MaLR	chr9MTD44338824	ProperStrand	3	chr9	44338664	44338754	SINE	B1_Mus1	Alu	chr9B1_Mus144338673	NonProperStrand	2	2	-inf
chr7	71472655	71472745	protein_coding	Mtmr10	intron	ENSMUSG00000030522	NonProperStrand	5	chr7	71496187	71496287	protein_coding	Fan1	intron	ENSMUSG00000033458	ProperStrand	1	1	-inf
chrX	152806705	152806795	LINE	L1Md_A	L1	chrXL1Md_A152805196	NonProperStrand	1	chr2	112227258	112227357	protein_coding	2410042D21Rik	intron	ENSMUSG00000027132	ProperStrand	3	1	-inf
chr17	70963742	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	105819462	105819531	protein_coding	Col6a5	intron	ENSMUSG00000091345	ProperStrand	15	1	-8.9997
chr7	27518796	27518886	LINE	L1Md_F3	L1	chr7L1Md_F327512712	NonProperStrand	24	chr7	27518884	27518984	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int27518887	NonProperStrand	13	4	-inf
chr18	34812515	34813437	LTR	RLTR4_MM-int	ERV1	chr18RLTR4_MM-int34812358	NonProperStrand	2	chr18	34810401	34812402	protein_coding-noncoding	Cdc23	utr3	ENSMUSG00000024370	NonProperStrand	9	1	-inf
chr15	76061496	76061618	protein_coding-noncoding	Plec	utr3	ENSMUSG00000022565	ProperStrand	2	chr15	84091510	84091552	protein_coding	Parvb	intron	ENSMUSG00000022438	NonProperStrand	30	1	-21.6628
chr17	39847338	39848058	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	110281274	110281348	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	58	-7.7204
chr6	124741223	124741287	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr14	11593557	11593642	antisense	Gm16542	.	ENSMUSG00000089833	ProperStrand	103	1	-14.2230
chr9	70228640	70228781	protein_coding	Myo1e	intron	ENSMUSG00000032220	ProperStrand	78	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-9.4182
chr11	40832383	40832473	LINE	L1Md_T	L1	chr11L1Md_T40829768	NonProperStrand	2	chr15	58094696	58094796	lincRNA	Gm15943	intron	ENSMUSG00000086801	ProperStrand	24	1	-20.2563
chr6	49183345	49183435	SINE	B3	B2	chr6B349183291	ProperStrand	1	chr13	114116895	114116995	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	1	-inf
chr11	109011849	109011876	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	12930813	12930852	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	1	-5.5352
chr16	91636054	91636123	protein_coding	Gart	intron	ENSMUSG00000022962	ProperStrand	101	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.5152
chr6	71872733	71872843	protein_coding	Polr1a	intron	ENSMUSG00000049553	ProperStrand	35	chr7	15949474	15949491	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	1	-15.4482
chr6	124744024	124744074	LTR	MYSERV-int	ERVK	chr6MYSERV-int124743688	ProperStrand	11	chrX	151919925	151920004	LTR	MLT1C	MaLR	chrXMLT1C151919651	ProperStrand	4	1	-inf
chr6	3201470	3201505	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	5	chr14	63492592	63492714	protein_coding	Wdfy2	intron	ENSMUSG00000014547	ProperStrand	28	1	-18.8243
chr10	23856280	23856299	LINE	Lx2	L1	chr10Lx223855387	NonProperStrand	2	chr17	39846474	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr12	59040410	59040505	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr14	108063768	108063785	Low_complexity	CT-rich	Low_complexity	chr14CT-rich108063609	ProperStrand	1	1	-inf
chr7	139683047	139683063	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr9	59672041	59675639	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-3.2631
chr13	109953119	109953188	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr11	70999522	70999753	protein_coding	Nlrp1b	intron	ENSMUSG00000070390	ProperStrand	51	1	-8.3053
chr3	15796556	15796646	LTR	MurERV4_19-int	ERVK	chr3MurERV4_19-int15796579	NonProperStrand	1	chr3	15496837	15496937	protein_coding	Sirpb1b	intron	ENSMUSG00000078781	ProperStrand	2	1	-inf
chr15	21677348	21677438	LINE	L1Md_F2	L1	chr15L1Md_F221675095	NonProperStrand	1	chr15	21677562	21677662	LINE	L1Md_F2	L1	chr15L1Md_F221677565	NonProperStrand	1	1	-inf
chr10	82648659	82648749	protein_coding	Chst11	intron	ENSMUSG00000034612	NonProperStrand	9	chr10	42054168	42054268	protein_coding	Lace1	intron	ENSMUSG00000038302	NonProperStrand	13	2	-inf
chrX	12065222	12065295	LTR	ORR1C1	MaLR	chrXORR1C112065165	ProperStrand	1	chr8	122011038	122011061	protein_coding	Slc38a8	intron	ENSMUSG00000034224	NonProperStrand	70	1	-inf
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr8	95742989	95743016	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-6.7435
chr2	102829379	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr1	93421665	93421722	protein_coding	Traf3ip1	intron	ENSMUSG00000034292	NonProperStrand	54	1	-10.0870
chr9	104201890	104203176	protein_coding	Acpp	utr3	ENSMUSG00000032561	ProperStrand	41	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.7248
chr11	109011745	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	54228042	54228064	LINE	Lx5	L1	chr14Lx554227644	ProperStrand	1	1	-inf
chr14	21335609	21335710	protein_coding	Ppp3cb	intron	ENSMUSG00000021816	NonProperStrand	22	chr13	97190580	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.1106
chr1	78772061	78772161	LTR	ORR1A0	MaLR	chr1ORR1A078771811	ProperStrand	1	chr14	33967481	33967571	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr14	69690137	69690199	LINE	L1MEc	L1	chr14L1MEc69690058	ProperStrand	1	chr17	39846932	39846996	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	122018746	122018785	protein_coding-noncoding	Slc38a8	utr3	ENSMUSG00000034224	NonProperStrand	13	chr9	123462076	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr18	35692267	35692367	SINE	B4A	B4	chr18B4A35692267	NonProperStrand	1	chr18	35692547	35692637	SINE	B4A	B4	chr18B4A35692551	NonProperStrand	1	1	-inf
chr1	28706717	28706817	LINE	L1_Mus1	L1	chr1L1_Mus128706705	ProperStrand	1	chr1	28706488	28706578	LTR	RLTR13B1	ERVK	chr1RLTR13B128705801	ProperStrand	1	1	-inf
chr10	83013887	83013977	protein_coding	A230046K03Rik	intron	ENSMUSG00000034560	NonProperStrand	2	chr10	63044782	63044882	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-18.4181
chr4	121153099	121153142	LINE	L1_Mus3	L1	chr4L1_Mus3121152410	ProperStrand	2	chr17	39847659	39847761	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr6	33624397	33624427	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chrX	134357336	134357376	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-5.0053
chr14	121601952	121602019	protein_coding	Farp1	intron	ENSMUSG00000025555	NonProperStrand	67	chr13	97190545	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.9086
chr12	83704157	83704247	LTR	MamGypLTR3	Gypsy	chr12MamGypLTR383704132	NonProperStrand	1	chr12	83703688	83703788	LTR	RMER4B	ERVK	chr12RMER4B83703409	ProperStrand	1	1	-inf
chr12	78350929	78351046	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr12	84009531	84009549	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	72	1	-5.5387
chr2	153115292	153115381	SINE	B1_Mus2	Alu	chr2B1_Mus2153115302	ProperStrand	1	chr2	153117240	153117305	protein_coding	Kif3b	intron	ENSMUSG00000027475	ProperStrand	32	1	-inf
chr17	39845764	39845813	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	108335164	108336679	SINE	B1_Mur1	Alu	chr9B1_Mur1108336560	NonProperStrand	7	1	-6.3587
chr4	133277523	133277612	protein_coding	Arid1a	intron	ENSMUSG00000007880	ProperStrand	53	chr1	179159665	179159704	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	4	-20.8068
chr13	49587661	49587751	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	chr2	126179487	126179586	protein_coding	Atp8b4	intron	ENSMUSG00000060131	NonProperStrand	14	2	-19.6288
chr11	63969492	63969582	LINE	L1Md_A	L1	chr11L1Md_A63969322	NonProperStrand	1	chr4	150544561	150544661	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-inf
chr11	109011794	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	93334625	93335615	protein_coding	Per2	intron	ENSMUSG00000055866	ProperStrand	42	1	-6.8065
chr1	13372217	13372317	SINE	B1_Mur2	Alu	chr1B1_Mur213372155	ProperStrand	8	chr1	13372370	13372460	SINE	B4A	B4	chr1B4A13372296	ProperStrand	5	5	-inf
chr4	98737110	98737144	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	chr6	84667094	84667159	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-8.6119
chr8	72739742	72739842	SINE	B4A	B4	chr8B4A72739603	NonProperStrand	3	chr8	72739400	72739731	SINE	RSINE1	B4	chr8RSINE172739304	ProperStrand	2	1	-20.2824
chr4	78657946	78658046	LINE	L1Md_F3	L1	chr4L1Md_F378656938	NonProperStrand	1	chr4	78658234	78658324	LINE	L1Md_F3	L1	chr4L1Md_F378656938	ProperStrand	1	1	-inf
chr17	80704141	80704241	SINE	B3A	B2	chr17B3A80704068	NonProperStrand	1	chr17	80704307	80704397	SINE	PB1D9	Alu	chr17PB1D980704308	NonProperStrand	1	1	-inf
chrX	98462037	98462137	protein_coding-noncoding	Il2rg	utr3	ENSMUSG00000031304	NonProperStrand	1	chrX	98461865	98461955	protein_coding	Gm20489	intron	ENSMUSG00000092463	NonProperStrand	1	1	-inf
chr17	39843709	39843818	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr3	132819025	132819058	protein_coding	D630013G24Rik	intron	ENSMUSG00000040969	NonProperStrand	19	1	-5.1560
chr17	39846750	39846871	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	86697871	86699605	protein_coding	Nanos3	intron	ENSMUSG00000056155	NonProperStrand	5	3	-9.1539
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr19	58804519	58804537	protein_coding	Pnliprp1	exon	ENSMUSG00000042179	ProperStrand	1	1	-inf
chr10	71209616	71209718	LINE	L1_Mur3	L1	chr10L1_Mur371208619	NonProperStrand	4	chr10	71209738	71209828	LTR	MTD	MaLR	chr10MTD71209762	NonProperStrand	5	4	-inf
chr8	77549725	77555724	protein_coding	Hmgxb4	utr3	ENSMUSG00000034518	ProperStrand	7	chr15	9113583	9113657	protein_coding	Lmbrd2	intron	ENSMUSG00000039704	NonProperStrand	39	1	-17.3501
chr3	123076677	123076767	protein_coding-noncoding	Mettl14	utr3	ENSMUSG00000028114	NonProperStrand	1	chr3	123076884	123076984	protein_coding	Mettl14	exon	ENSMUSG00000028114	NonProperStrand	1	1	-inf
chr6	39401419	39404724	LTR	RLTR12B	ERVK	chr6RLTR12B39404664	ProperStrand	8	chr6	39401211	39401256	SINE	B2_Mm2	B2	chr6B2_Mm239401117	NonProperStrand	2	1	-inf
chr11	68366872	68366913	LTR	ORR1A2	MaLR	chr11ORR1A268366639	ProperStrand	2	chr5	66331431	66331541	protein_coding	Chrna9	intron	ENSMUSG00000029205	NonProperStrand	122	1	-17.9330
chr9	103332367	103332400	lincRNA	5830418P13Rik	intron	ENSMUSG00000086236	ProperStrand	54	chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	1	-12.9079
chr17	39847273	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	90598322	90598411	LTR	ORR1D1	MaLR	chr6ORR1D190598330	NonProperStrand	1	1	-inf
chrX	7842002	7842046	LINE	HAL1-3A_ME	L1	chrXHAL1-3A_ME7842003	NonProperStrand	1	chr17	39847248	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr13	24273029	24273103	protein_coding	Lrrc16a	intron	ENSMUSG00000021338	ProperStrand	112	1	-9.0278
chr17	39847361	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	175677458	175683762	protein_coding	Ifi204	intron	ENSMUSG00000073489	ProperStrand	13	3	-4.7272
chr7	96292440	96292552	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	chrX	164579200	164579221	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	53	1	-9.1507
chr17	39846385	39846433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	67989898	67989936	Low_complexity	C-rich	Low_complexity	chr17C-rich67989869	NonProperStrand	1	1	-inf
chr10	7766744	7766762	LINE	Lx7	L1	chr10Lx77766496	ProperStrand	1	chr13	38500559	38500686	protein_coding	Bmp6	intron	ENSMUSG00000039004	NonProperStrand	47	1	-inf
chr10	128625269	128626085	LINE	L1Md_F2	L1	chr10L1Md_F2128625017	ProperStrand	7	chr7	133063364	133063405	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-9.5510
chr4	43492784	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr5	92483533	92483628	protein_coding	G3bp2	utr3	ENSMUSG00000029405	ProperStrand	1	1	-inf
chr14	105109602	105109669	LINE	L1Md_T	L1	chr14L1Md_T105104131	ProperStrand	8	chr13	73909283	73909358	protein_coding	Slc12a7	intron	ENSMUSG00000017756	NonProperStrand	25	1	-18.0021
chr5	146260994	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	118403168	118403189	protein_coding	Zfp248	intron	ENSMUSG00000030145	ProperStrand	20	1	-7.2424
chr1	39920196	39920300	LINE	L1ME2	L1	chr1L1ME239920156	NonProperStrand	1	chr13	55704037	55704070	protein_coding	B4galt7	intron	ENSMUSG00000021504	ProperStrand	28	1	-inf
chr17	39843506	39843559	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	105684385	105684446	protein_coding	Adora3	intron	ENSMUSG00000000562	NonProperStrand	13	1	-5.4538
chr3	41590503	41590593	LINE	L1Md_F2	L1	chr3L1Md_F241590299	NonProperStrand	1	chr3	41590176	41590276	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int41587093	NonProperStrand	1	1	-inf
chr8	106764574	106764616	protein_coding	Tk2	intron	ENSMUSG00000035824	NonProperStrand	17	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.5018
chr14	31266488	31266504	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr6	134150589	134150660	protein_coding	Etv6	intron	ENSMUSG00000030199	ProperStrand	187	1	-6.8517
chr10	122565874	122565974	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	chr14	33967460	33967550	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-12.6367
chr17	39847889	39847957	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	80053664	80054540	SINE	B3	B2	chr10B380053589	ProperStrand	1	1	-inf
chr7	29497184	29497225	SINE	B2_Mm2	B2	chr7B2_Mm229497138	NonProperStrand	1	chr7	29503365	29503469	protein_coding	Fbxo17	intron	ENSMUSG00000030598	NonProperStrand	54	1	-inf
chr6	33043294	33043339	SINE	B4	B4	chr6B433043283	ProperStrand	1	chr10	7662631	7662666	protein_coding	Tab2	intron	ENSMUSG00000015755	ProperStrand	37	1	-inf
chr15	51856956	51857050	LINE	L1Md_T	L1	chr15L1Md_T51854114	ProperStrand	1	chr9	123461793	123461819	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	59244464	59244564	LTR	MTD	MaLR	chr2MTD59244424	ProperStrand	4	chr2	59244319	59244409	SINE	B2_Mm2	B2	chr2B2_Mm259244222	NonProperStrand	3	3	-inf
chr10	37270960	37271050	LTR	RLTR1C	ERV1	chr10RLTR1C37270594	NonProperStrand	1	chr10	37271308	37271408	LTR	RMER16-int	ERVK	chr10RMER16-int37271204	ProperStrand	1	1	-inf
chr3	95627657	95627746	SINE	B1_Mus2	Alu	chr3B1_Mus295627672	NonProperStrand	1	chr3	95627753	95627853	SINE	B2_Mm2	B2	chr3B2_Mm295627774	NonProperStrand	2	1	-inf
chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr5	140506118	140506226	protein_coding	Mad1l1	intron	ENSMUSG00000029554	NonProperStrand	52	2	-15.7966
chr17	39847029	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	79856159	79856249	SINE	B1_Mm	Alu	chr17B1_Mm79856153	ProperStrand	2	1	-5.3533
chr8	71966924	71966982	LINE	Lx5	L1	chr8Lx571965457	ProperStrand	5	chr17	70963685	70963759	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	2	-18.2138
chrX	77536944	77536962	LINE	L1_Mus3	L1	chrXL1_Mus377536579	NonProperStrand	1	chr13	44869595	44869715	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr14	81752416	81752517	LINE	L1Md_F2	L1	chr14L1Md_F281752420	NonProperStrand	2	chr14	81752223	81752313	LINE	L1_Mus1	L1	chr14L1_Mus181752015	ProperStrand	2	2	-inf
chr17	39846586	39846662	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	139458779	139458845	SINE	B4A	B4	chr4B4A139458776	NonProperStrand	5	1	-3.1907
chr1	183195400	183195466	LTR	IAPEz-int	ERVK	chr1IAPEz-int183194008	ProperStrand	2	chr9	123462081	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	80379819	80379926	protein_coding	Lmnb2	intron	ENSMUSG00000062075	ProperStrand	3	1	-4.3017
chr17	39847767	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	122849955	122850074	LTR	RMER12	ERVK	chr9RMER12122849876	ProperStrand	1	1	-inf
chr14	19272883	19272981	LTR	RLTR9F	ERVK	chr14RLTR9F19272684	ProperStrand	1	chr14	19273124	19273215	SINE	ID_B1	B4	chr14ID_B119273149	NonProperStrand	1	1	-inf
chr1	179423388	179517832	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int179517055	NonProperStrand	14	chr1	179092958	179094393	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	1	-11.7718
chr2	22744854	22744905	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	19693656	19693735	LINE	L1Md_F3	L1	chr4L1Md_F319688088	ProperStrand	3	1	-13.1573
chr12	80240481	80240533	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr9	118674950	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.9120
chr13	73788615	73788679	LINE	Lx6	L1	chr13Lx673788408	NonProperStrand	2	chr4	117155774	117155848	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-16.6860
chr9	4131351	4131429	Low_complexity	GA-rich	Low_complexity	chr9GA-rich4131173	NonProperStrand	1	chr2	121784801	121784869	protein_coding	Ctdspl2	intron	ENSMUSG00000033411	NonProperStrand	29	1	-inf
chr6	72433905	72433987	LTR	RLTR19-int	ERVK	chr6RLTR19-int72433083	ProperStrand	7	chr19	3488966	3488988	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	1	-13.9089
chr17	39847160	39847270	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	25433714	25433747	lincRNA	Gm17550	exon	ENSMUSG00000092018	ProperStrand	8	1	-3.3803
chr19	40294014	40294044	LINE	Lx2A1	L1	chr19Lx2A140293779	ProperStrand	9	chr19	40292468	40292557	LTR	RLTR13C2	ERVK	chr19RLTR13C240292390	ProperStrand	7	1	-19.8944
chr9	123462088	123462115	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	34573452	34573494	protein_coding	Zfyve28	intron	ENSMUSG00000037224	ProperStrand	8	1	-4.8360
chr8	25768312	25768378	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	40	chr1	15857472	15857561	protein_coding	Gm106	intron	ENSMUSG00000032719	NonProperStrand	24	1	-14.7027
chr3	65353666	65353733	protein_coding	Tiparp	intron	ENSMUSG00000034640	NonProperStrand	7	chr1	136488390	136488465	protein_coding	Kdm5b	intron	ENSMUSG00000042207	ProperStrand	42	1	-17.2165
chr11	20100916	20112825	protein_coding	Rab1	intron	ENSMUSG00000020149	NonProperStrand	7	chr13	109651630	109651704	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-12.3990
chr3	95254363	95254501	protein_coding	Arnt	intron	ENSMUSG00000015522	NonProperStrand	29	chr7	81605954	81605970	protein_coding	Slco3a1	intron	ENSMUSG00000025790	NonProperStrand	32	1	-14.7643
chr15	26129029	26129129	LINE	Lx8	L1	chr15Lx826128743	ProperStrand	1	chr15	26129437	26129527	LINE	Lx8	L1	chr15Lx826129140	ProperStrand	1	1	-inf
chr3	145600506	145603951	SINE	B1F1	Alu	chr3B1F1145600525	NonProperStrand	3	chr3	145603968	145604068	protein_coding	2410004B18Rik	intron	ENSMUSG00000036873	ProperStrand	7	3	-inf
chr5	96458916	96459038	LINE	Lx7	L1	chr5Lx796458524	NonProperStrand	2	chr13	28839220	28839246	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	2	-inf
chr2	22744856	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr15	89539870	89539930	Other	RMER1B	Other	chr15RMER1B89539689	NonProperStrand	1	1	-inf
chrX	20805102	20805220	LINE	L1_Mus3	L1	chrXL1_Mus320804593	NonProperStrand	3	chr11	21981667	21981694	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-17.2602
chr18	24286778	24286794	SINE	B4A	B4	chr18B4A24286772	ProperStrand	1	chr10	75520574	75520716	protein_coding	Slc5a4b	utr3	ENSMUSG00000020226	NonProperStrand	34	1	-inf
chr11	33483061	33483077	Low_complexity	polypyrimidine	Low_complexity	chr11polypyrimidine33483025	ProperStrand	1	chr2	26912993	26913226	SINE	B4	B4	chr2B426912949	ProperStrand	20	1	-inf
chr6	79002433	79002451	LINE	L1VL2	L1	chr6L1VL279002423	NonProperStrand	1	chr10	83074278	83074340	protein_coding-noncoding	Appl2	utr3	ENSMUSG00000020263	NonProperStrand	1	1	-inf
chr6	125186355	125186573	protein_coding-noncoding	Cd27	utr3	ENSMUSG00000030336	ProperStrand	80	chr6	125186494	125186686	protein_coding	Cd27	exon	ENSMUSG00000030336	ProperStrand	88	62	-inf
chr19	53223752	53223840	protein_coding	Add3	intron	ENSMUSG00000025026	ProperStrand	33	chr2	166979963	166980016	protein_coding	Kcnb1	intron	ENSMUSG00000050556	ProperStrand	24	1	-15.0924
chr8	85083440	85084449	LINE	L1Md_A	L1	chr8L1Md_A85084134	NonProperStrand	2	chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr15	82947667	82947768	protein_coding-noncoding	Rrp7a	utr3	ENSMUSG00000018040	ProperStrand	12	chr15	82957082	82957105	protein_coding	Poldip3	utr3	ENSMUSG00000041815	ProperStrand	9	1	-20.0397
chr13	23764235	23764287	LINE	Lx2B	L1	chr13Lx2B23764080	NonProperStrand	27	chr15	72871736	72871806	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	1	-10.2883
chr12	111800232	111800287	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	ProperStrand	236	chr12	78350926	78351013	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-3.2920
chr7	134710168	134710258	SINE	B2_Mm2	B2	chr7B2_Mm2134710057	NonProperStrand	1	chr7	134710319	134710419	SINE	B3A	B2	chr7B3A134710286	ProperStrand	1	1	-inf
chr9	65822323	65822407	protein_coding-noncoding	Csnk1g1	utr5	ENSMUSG00000032384	NonProperStrand	4	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-14.5811
chr7	34958324	34958414	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int34956938	NonProperStrand	2	chr7	34958730	34958772	SINE	B1_Mus2	Alu	chr7B1_Mus234958648	ProperStrand	1	1	-inf
chr4	24900933	24901033	processed_transcript	Gm11906	.	ENSMUSG00000085885	ProperStrand	15	chr4	24900787	24900877	protein_coding	Gpr63	utr5	ENSMUSG00000040372	ProperStrand	2	2	-inf
chr17	34840943	34841106	protein_coding	Tnxb	exon	ENSMUSG00000033327	NonProperStrand	91	chr10	43319105	43319175	protein_coding	F930017D23Rik	intron	ENSMUSG00000075184	ProperStrand	41	2	-19.1434
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr13	29985913	29985989	LINE	L1Md_F2	L1	chr13L1Md_F229983755	ProperStrand	41	1	-10.5751
chr17	39847555	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	179546927	179546999	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n179546919	ProperStrand	1	1	-inf
chr17	39846402	39846851	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	116489183	116489200	protein_coding	Agl	intron	ENSMUSG00000033400	ProperStrand	7	2	-4.6854
chr4	150243331	150243350	SINE	ID_B1	B4	chr4ID_B1150243157	ProperStrand	1	chr4	150242632	150242661	protein_coding	Errfi1	utr3	ENSMUSG00000028967	ProperStrand	111	1	-inf
chr2	172377795	172377885	protein_coding-noncoding	Tfap2c	utr5	ENSMUSG00000028640	ProperStrand	8	chr2	172377899	172378000	protein_coding	Tfap2c	intron	ENSMUSG00000028640	ProperStrand	20	8	-inf
chr13	23555142	23555227	protein_coding	Btn1a1	intron	ENSMUSG00000000706	NonProperStrand	212	chr7	105862147	105862222	protein_coding	Prkrir	intron	ENSMUSG00000030753	NonProperStrand	4	1	-15.1771
chr6	48118900	48118927	lincRNA	Gm16630	intron	ENSMUSG00000086383	NonProperStrand	12	chr1	89731866	89731941	protein_coding-noncoding	Sag	utr5	ENSMUSG00000056055	ProperStrand	18	1	-17.8341
chr17	39846415	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	91618450	91618555	LTR	RMER19B	ERVK	chr8RMER19B91618236	NonProperStrand	1	1	-inf
chr9	19657644	19657873	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chr8	13417126	13417255	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	13	2	-inf
chr2	167065002	167065081	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr13	95604377	95604425	protein_coding	Tbca	intron	ENSMUSG00000042043	NonProperStrand	6	1	-16.2120
chr17	39846453	39846887	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	97278895	97279247	protein_coding	Arhgap23	intron	ENSMUSG00000049807	NonProperStrand	18	3	-3.4595
chr17	39846411	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	58391615	58421222	protein_coding	Aox3l1	intron	ENSMUSG00000079554	NonProperStrand	27	5	-4.7197
chrX	103469766	103469866	LINE	L1Md_F2	L1	chrXL1Md_F2103469145	NonProperStrand	25	chr6	90987529	90987619	protein_coding	Nup210	intron	ENSMUSG00000030091	ProperStrand	121	2	-20.1004
mmu-miR-295-3p	0	22	miRNA	mmu-miR-295-3p	.	mmu-miR-295-3p	ProperStrand	4	chr11	88833148	88835081	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	1	-16.8430
chr6	38695455	38695545	protein_coding-noncoding	Hipk2	utr3	ENSMUSG00000061436	ProperStrand	1	chr6	38695288	38695388	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	1	-inf
chr9	98110109	98110209	LINE	L1M4c	L1	chr9L1M4c98110073	ProperStrand	3	chr9	98109859	98109949	SINE	B1_Mus1	Alu	chr9B1_Mus198109850	ProperStrand	1	1	-inf
chr17	39846807	39846840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	106841164	106841242	SINE	B3	B2	chr11B3106841148	NonProperStrand	1	1	-inf
chr13	113889606	113889683	protein_coding	Gzma	intron	ENSMUSG00000023132	NonProperStrand	8	chr9	22350669	22350725	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	1	-14.5525
chr18	63828972	63829072	protein_coding	Txnl1	intron	ENSMUSG00000024583	NonProperStrand	9	chr18	63830379	63830469	protein_coding	Txnl1	intron	ENSMUSG00000024583	ProperStrand	3	1	-21.0885
chr8	45001923	45001985	LTR	MERVL-int	ERVL	chr8MERVL-int45000403	NonProperStrand	3	chr8	44998506	44998558	LTR	RLTR28	ERVL	chr8RLTR2844998466	ProperStrand	1	1	-inf
chr17	4082094	4082287	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr5	68219495	68221324	protein_coding	Atp8a1	intron	ENSMUSG00000037685	ProperStrand	23	5	-22.1558
chr8	73352857	73352957	SINE	PB1D7	Alu	chr8PB1D773352845	ProperStrand	11	chr8	73353069	73353159	SINE	RSINE1	B4	chr8RSINE173353011	NonProperStrand	1	1	-inf
chr7	19076247	19076263	LINE	L1Md_T	L1	chr7L1Md_T19072386	NonProperStrand	1	chr2	163055937	163056029	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-inf
chr2	61730023	61730104	LINE	L1_Mus4	L1	chr2L1_Mus461729564	ProperStrand	1	chr2	91054614	91054996	protein_coding	Ddb2	intron	ENSMUSG00000002109	NonProperStrand	9	1	-inf
chr17	39847737	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	78734495	78734546	SINE	B3	B2	chr14B378734338	ProperStrand	1	1	-inf
chr2	109451803	109451903	LINE	L1Md_F2	L1	chr2L1Md_F2109451360	ProperStrand	1	chr2	109452021	109452111	LTR	BGLII	ERVK	chr2BGLII109452014	ProperStrand	1	1	-inf
chr17	39845361	39845457	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr1	133564491	133564508	protein_coding	Ctse	intron	ENSMUSG00000004552	ProperStrand	3	1	-8.2800
chr11	101493420	101493446	protein_coding	Rdm1	intron	ENSMUSG00000010362	NonProperStrand	23	chr14	24232065	24232189	protein_coding	Kcnma1	intron	ENSMUSG00000063142	ProperStrand	191	2	-18.2947
chr11	83501201	83504277	LTR	RNLTR23	ERVK	chr11RNLTR2383502715	NonProperStrand	5	chr11	83501149	83502770	pseudogene	Gm11432	.	ENSMUSG00000081449	ProperStrand	7	5	-inf
chr14	122216422	122216504	LINE	L1_Mus1	L1	chr14L1_Mus1122216217	ProperStrand	3	chr14	122208738	122208785	SINE	B2_Mm2	B2	chr14B2_Mm2122208653	ProperStrand	3	1	-20.2168
chr14	106729159	106729249	LINE	Lx5	L1	chr14Lx5106729093	NonProperStrand	1	chr14	106729014	106729114	LTR	RLTR10	ERVK	chr14RLTR10106728962	NonProperStrand	1	1	-inf
chr14	31108618	31108638	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr5	140228262	140228387	protein_coding	Ints1	intron	ENSMUSG00000029547	ProperStrand	67	1	-9.5210
chr13	119775312	119775379	LTR	RMER20B	ERVK	chr13RMER20B119775221	NonProperStrand	1	chr1	55078589	55078607	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	1	-inf
chr4	48458571	48458592	protein_coding	Tex10	intron	ENSMUSG00000028345	ProperStrand	22	chr4	115031817	115031929	pseudogene	Gm12836	.	ENSMUSG00000083190	ProperStrand	7	1	-18.8173
chr4	6375966	6376056	protein_coding	Nsmaf	intron	ENSMUSG00000028245	NonProperStrand	8	chr4	6373947	6374047	pseudogene	Gm10056	.	ENSMUSG00000058945	NonProperStrand	2	2	-inf
chr17	39846405	39846439	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	164149029	164149045	antisense	Dnm3os	.	ENSMUSG00000078190	ProperStrand	1	1	-inf
chr12	82171764	82171849	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	chr17	31476181	31476197	protein_coding	Slc37a1	intron	ENSMUSG00000024036	NonProperStrand	10	1	-13.5301
chr17	39847736	39847801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	71394904	71394984	Other	RMER1B	Other	chr2RMER1B71394712	NonProperStrand	2	1	-5.4040
chr15	7152644	7152781	LTR	MTD	MaLR	chr15MTD7152468	NonProperStrand	1	chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	87943880	87943992	protein_coding	2810459M11Rik	intron	ENSMUSG00000026227	ProperStrand	5	1	-3.1907
chr15	38075375	38075461	LTR	RLTRETN_Mm	ERVK	chr15RLTRETN_Mm38075185	ProperStrand	2	chr7	141509790	141509866	protein_coding	D7Ertd443e	intron	ENSMUSG00000030994	ProperStrand	57	1	-19.3380
chr16	58409146	58409223	protein_coding	Dcbld2	intron	ENSMUSG00000035107	ProperStrand	36	chr6	83201274	83201315	protein_coding	Slc4a5	intron	ENSMUSG00000068323	ProperStrand	48	2	-20.9627
chr9	123461931	123461982	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	55225090	55225189	protein_coding	Fam188b	intron	ENSMUSG00000038022	ProperStrand	14	1	-3.7266
chr17	39846733	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	84602737	84602821	LTR	ORR1D1	MaLR	chr2ORR1D184602629	NonProperStrand	2	1	-5.3533
chr1	58757185	58757275	LTR	RLTR11A2	ERVK	chr1RLTR11A258756784	NonProperStrand	3	chr3	88556377	88556477	protein_coding	Syt11	intron	ENSMUSG00000068923	NonProperStrand	69	1	-18.1213
chr11	22942737	22942804	SINE	B4A	B4	chr11B4A22942671	ProperStrand	1	chr9	123462056	123462113	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	132310297	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr16	23110867	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-9.5917
chr2	102112077	102112195	LTR	MTD	MaLR	chr2MTD102111988	ProperStrand	1	chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	1	-inf
chr17	39848134	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	133647389	133647469	protein_coding-noncoding	Slc26a9	utr5	ENSMUSG00000042268	NonProperStrand	4	1	-6.6701
chr14	51089529	51089592	LINE	L1Md_F2	L1	chr14L1Md_F251088852	ProperStrand	3	chr5	140198814	140198890	protein_coding	Micall2	intron	ENSMUSG00000036718	ProperStrand	59	2	-20.6885
chrX	101082370	101082547	LINE	L1_Mm	L1	chrXL1_Mm101082127	NonProperStrand	3	chr6	28685228	28685313	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-12.8788
chr14	69997812	69997894	lincRNA	Gm16867	intron	ENSMUSG00000085092	NonProperStrand	1	chr9	123462104	123462176	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	144520751	144520853	LINE	L1_Mus1	L1	chr3L1_Mus1144519097	ProperStrand	12	chr3	144521925	144521946	LTR	BGLII	ERVK	chr3BGLII144521920	ProperStrand	2	2	-inf
chr11	59795227	59795765	protein_coding	Pemt	intron	ENSMUSG00000000301	ProperStrand	36	chr5	31160065	31165909	protein_coding	Mapre3	intron	ENSMUSG00000029166	NonProperStrand	36	1	-14.0920
chr3	9603148	9603233	protein_coding	Zfp704	intron	ENSMUSG00000040209	NonProperStrand	5	chr3	9521943	9521993	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-11.6355
chr2	174190830	174190930	LINE	L1MA8	L1	chr2L1MA8174190756	NonProperStrand	1	chr2	174191347	174191437	LINE	L1MA8	L1	chr2L1MA8174191213	NonProperStrand	1	1	-inf
chr17	39847822	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	32252115	32254324	protein_coding	Ptges2	intron	ENSMUSG00000026820	ProperStrand	12	3	-5.0409
chr1	87769225	87769261	LTR	RMER17B	ERVK	chr1RMER17B87769025	ProperStrand	2	chr3	116651472	116662492	protein_coding	Palmd	intron	ENSMUSG00000033377	ProperStrand	33	1	-20.7426
chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	135983406	135983495	protein_coding	Htr1d	intron	ENSMUSG00000070687	NonProperStrand	5	1	-5.8308
chr7	68093988	68094083	LINE	Lx2	L1	chr7Lx268093836	ProperStrand	1	chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	136733765	136733798	lincRNA	Gm15046	intron	ENSMUSG00000086441	ProperStrand	51	chr9	110281314	110281339	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.8878
chr2	73055067	73055148	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr17	31544056	31544127	protein_coding	Pde9a	intron	ENSMUSG00000041119	NonProperStrand	22	1	-13.5832
chr4	12095220	12095310	protein_coding-noncoding	Fam92a	utr3	ENSMUSG00000028218	NonProperStrand	5	chr4	12095365	12095465	protein_coding	Fam92a	exon	ENSMUSG00000028218	NonProperStrand	1	1	-inf
chr17	39847522	39847542	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	88117762	88117780	protein_coding-noncoding	Cct3	utr5	ENSMUSG00000001416	NonProperStrand	1	1	-inf
chr10	128086050	128086119	lincRNA	Gm17336	exon	ENSMUSG00000091431	ProperStrand	114	chrX	13115118	13115177	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-8.7933
chr13	5865399	5865466	protein_coding	Klf6	intron	ENSMUSG00000000078	ProperStrand	7	chr1	176735655	176735727	protein_coding	Fmn2	intron	ENSMUSG00000028354	NonProperStrand	16	1	-19.4316
chr15	64028891	64028966	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr17	43607386	43611290	protein_coding	Mep1a	utr3	ENSMUSG00000023914	NonProperStrand	1	1	-inf
chr17	94849606	94849696	LINE	L1_Mm	L1	chr17L1_Mm94848982	NonProperStrand	1	chr17	39847027	39847127	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	91465109	91465220	SINE	B1_Mus1	Alu	chr2B1_Mus191465113	NonProperStrand	1	chr11	113901595	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-inf
chr17	39847035	39847103	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	20122117	20122147	protein_coding	Cpa3	exon	ENSMUSG00000001865	ProperStrand	2	1	-5.3533
chr17	39847767	39847839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	68956856	68956938	protein_coding	Aloxe3	intron	ENSMUSG00000020892	NonProperStrand	1	1	-inf
chr4	150283238	150283323	protein_coding	Park7	utr5	ENSMUSG00000028964	NonProperStrand	11	chr7	107507480	107507524	protein_coding	Ppme1	intron	ENSMUSG00000030718	NonProperStrand	28	1	-17.0529
chr4	43492782	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr15	86194873	86194923	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-3.9641
chr4	148521333	148521391	LTR	RMER17B	ERVK	chr4RMER17B148520567	ProperStrand	4	chr4	148530792	148533931	protein_coding-noncoding	Pgd	utr3	ENSMUSG00000028961	NonProperStrand	2	2	-inf
chr5	47620024	47620047	LINE	L1M2	L1	chr5L1M247619738	ProperStrand	3	chr17	39847273	39847319	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr3	123507935	123507990	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr11	35976741	35976792	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	2	-14.0271
chr14	121357230	121357278	SINE	B2_Mm1t	B2	chr14B2_Mm1t121357189	ProperStrand	1	chr14	121340142	121340228	protein_coding	Ipo5	exon	ENSMUSG00000030662	NonProperStrand	44	1	-inf
chr7	27855094	27855148	LINE	Lx	L1	chr7Lx27854873	ProperStrand	1	chr18	34940274	34940843	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-inf
chr9	123461954	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	34647200	34647242	pseudogene	Btnl6	.	ENSMUSG00000058762	NonProperStrand	1	1	-inf
chr8	15640511	15640550	LINE	L1Md_A	L1	chr8L1Md_A15635631	ProperStrand	1	chr17	39846352	39846445	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846062	39846101	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	75183510	75184170	protein_coding	Smyd4	intron	ENSMUSG00000018809	NonProperStrand	15	1	-4.5000
chr17	39846842	39846880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	53206405	53206483	protein_coding	Kdelc2	intron	ENSMUSG00000034487	NonProperStrand	1	1	-inf
chr8	114774488	114774578	LINE	Lx7	L1	chr8Lx7114774493	NonProperStrand	1	chr17	39847439	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	23785349	23785476	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr13	44869571	44870025	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-4.6982
chr17	39846941	39846974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	21404909	21405017	SINE	ID_B1	B4	chr9ID_B121404856	ProperStrand	1	1	-inf
chr7	87170584	87170684	protein_coding	Zfp710	intron	ENSMUSG00000048897	ProperStrand	3	chr7	87042785	87042875	protein_coding	Ap3s2	intron	ENSMUSG00000063801	NonProperStrand	3	1	-20.2168
chr18	75001750	75002042	LTR	MTA_Mm	MaLR	chr18MTA_Mm75001701	ProperStrand	11	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-14.6981
chr17	15543257	15543277	protein_coding	Fam120b	intron	ENSMUSG00000014763	ProperStrand	3	chr5	117572681	117572699	protein_coding	Taok3	intron	ENSMUSG00000061288	ProperStrand	16	1	-inf
chr10	42372356	42372429	protein_coding	Ostm1	intron	ENSMUSG00000038280	NonProperStrand	116	chr19	32330518	32330580	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-8.7460
chr10	81534769	81534869	LINE	L1_Mur2	L1	chr10L1_Mur281532183	NonProperStrand	12	chr10	81534862	81534952	LTR	RMER19B	ERVK	chr10RMER19B81534872	ProperStrand	3	3	-inf
chr17	39846759	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	121203384	121203402	protein_coding	Slc44a3	intron	ENSMUSG00000039865	NonProperStrand	2	1	-5.3533
chr2	39215614	39215684	LINE	L1_Mur3	L1	chr2L1_Mur339215233	NonProperStrand	1	chr9	21404115	21404175	SINE	B3A	B2	chr9B3A21404122	NonProperStrand	1	1	-inf
chr16	23279909	23279981	protein_coding	St6gal1	intron	ENSMUSG00000022885	ProperStrand	43	chr7	57635506	57635577	protein_coding	Nell1	intron	ENSMUSG00000055409	ProperStrand	40	1	-13.5157
chr4	59764263	59764348	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	NonProperStrand	10	chr4	134070800	134070863	protein_coding	2610002D18Rik	intron	ENSMUSG00000078521	NonProperStrand	1	1	-inf
chr19	36356190	36356264	LTR	ORR1B2-int	MaLR	chr19ORR1B2-int36355598	NonProperStrand	1	chr2	168745447	168745484	protein_coding	Zfp64	intron	ENSMUSG00000027551	ProperStrand	101	1	-inf
chr4	74104098	74104119	LTR	IAPLTR2_Mm	ERVK	chr4IAPLTR2_Mm74103878	NonProperStrand	1	chr16	4962901	4963015	protein_coding	Anks3	intron	ENSMUSG00000022515	ProperStrand	31	1	-inf
chr17	84421124	84421224	LINE	L2	L2	chr17L284421076	ProperStrand	1	chr17	84420017	84420071	LTR	MLT1J-int	MaLR	chr17MLT1J-int84420009	NonProperStrand	1	1	-inf
chr13	97190580	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr19	30894678	30993057	protein_coding	Prkg1	intron	ENSMUSG00000052920	NonProperStrand	44	1	-5.7286
chr17	39846580	39846600	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	88750261	88750366	SINE	PB1	Alu	chr10PB188750236	ProperStrand	2	1	-5.3533
chr14	74743264	74743304	LTR	RMER13B	ERVK	chr14RMER13B74742705	ProperStrand	1	chr14	7241946	7242012	protein_coding	Gm3591	intron	ENSMUSG00000072736	ProperStrand	1	1	-inf
chr4	94471813	94471890	protein_coding	Tek	intron	ENSMUSG00000006386	NonProperStrand	54	chr18	76305131	76305160	protein_coding	Zbtb7c	intron	ENSMUSG00000044646	ProperStrand	68	1	-11.9830
chr17	39847651	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	22003708	22004965	protein_coding	Zfp872	exon	ENSMUSG00000074472	ProperStrand	9	2	-3.9821
chr4	41272754	41272844	SINE	B1_Mus2	Alu	chr4B1_Mus241272767	NonProperStrand	1	chr4	41272631	41272731	SINE	B2_Mm2	B2	chr4B2_Mm241272624	NonProperStrand	1	1	-inf
chr17	39847845	39847980	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	137540693	137540719	SINE	B2_Mm1t	B2	chr4B2_Mm1t137540525	ProperStrand	1	1	-inf
chr5	146260994	146261054	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	75192422	75193966	protein_coding	Gnb5	intron	ENSMUSG00000032192	ProperStrand	22	1	-7.0496
chr1	43361234	43361324	LTR	MLT1D	MaLR	chr1MLT1D43361049	ProperStrand	2	chr1	43361487	43361587	LTR	ORR1E	MaLR	chr1ORR1E43361315	NonProperStrand	2	2	-inf
chr3	38300529	38300629	LTR	MT2B	ERVL	chr3MT2B38300451	ProperStrand	1	chr3	38300799	38300889	LTR	RLTR25A	ERVK	chr3RLTR25A38300731	ProperStrand	1	1	-inf
chr11	106583580	106583683	protein_coding	Pecam1	intron	ENSMUSG00000020717	ProperStrand	95	chr17	33820160	33820182	protein_coding	Hnrnpm	intron	ENSMUSG00000059208	ProperStrand	59	1	-11.1328
chr17	39846750	39846805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	21070689	21070754	SINE	B4	B4	chr1B421070563	ProperStrand	1	1	-inf
chr1	164411998	164412088	LINE	L1_Mur3	L1	chr1L1_Mur3164411884	ProperStrand	1	chr4	43976257	43976357	protein_coding	Glipr2	intron	ENSMUSG00000028480	ProperStrand	11	1	-inf
chr13	51128230	51128315	LTR	IAPEz-int	ERVK	chr13IAPEz-int51128112	ProperStrand	2	chr13	51150913	51150988	LTR	MT2_Mm	ERVL	chr13MT2_Mm51150612	NonProperStrand	9	1	-inf
chr8	70322612	70322708	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	chr18	59007473	59011006	protein_coding	Adamts19	intron	ENSMUSG00000053441	ProperStrand	10	1	-11.8417
chr17	70963684	70963759	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr6	29833776	29833810	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	ProperStrand	78	1	-5.6918
chrX	151906453	151906493	LINE	Lx6	L1	chrXLx6151906297	ProperStrand	1	chr2	5379296	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr5	138366098	138366175	LINE	L1Md_F2	L1	chr5L1Md_F2138366073	ProperStrand	1	chr8	95877760	95877827	protein_coding	Ces1h	intron	ENSMUSG00000074156	NonProperStrand	2	1	-inf
chr1	118664451	118664521	LINE	L1VL4	L1	chr1L1VL4118664226	NonProperStrand	1	chr1	118663906	118663986	LTR	RLTR26	ERVK	chr1RLTR26118663703	NonProperStrand	1	1	-inf
chr18	10567469	10608466	protein_coding	Esco1	utr3	ENSMUSG00000024293	ProperStrand	9	chr9	123461882	123462019	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-7.7956
chr13	55533796	55533821	LINE	L1MA4	L1	chr13L1MA455533478	ProperStrand	2	chr17	39847767	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr14	63492585	63492666	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	chr10	62845367	62845413	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-9.4826
chr19	47586642	47586693	protein_coding	Obfc1	intron	ENSMUSG00000042694	NonProperStrand	10	chr9	56223574	56223676	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-12.1593
chr17	39846622	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	110696628	110696718	LTR	MT2B	ERVL	chr9MT2B110696622	NonProperStrand	1	1	-inf
chr19	47956742	47956842	protein_coding	Gsto2	intron	ENSMUSG00000025069	ProperStrand	1	chr8	72991049	72991139	protein_coding	Klhl26	intron	ENSMUSG00000055707	ProperStrand	27	1	-inf
chr2	32173172	32173287	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.0218
chr11	114671798	114672276	SINE	B4A	B4	chr11B4A114671799	ProperStrand	7	chr6	122713412	122713493	protein_coding	Slc2a3	intron	ENSMUSG00000003153	NonProperStrand	31	1	-17.8024
chr10	6862039	6862139	LTR	MTE2a	MaLR	chr10MTE2a6862059	ProperStrand	1	chr10	6862193	6862283	LTR	ORR1C2	MaLR	chr10ORR1C26862197	NonProperStrand	1	1	-inf
chr13	112578183	112578266	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr2	109334349	109334414	pseudogene	Gm13925	.	ENSMUSG00000081746	ProperStrand	6	1	-8.8671
chr2	155989341	155989457	protein_coding	Rbm39	intron	ENSMUSG00000027620	NonProperStrand	38	chr1	59204562	59204579	protein_coding	Mpp4	intron	ENSMUSG00000079550	NonProperStrand	7	1	-17.4063
chr17	57022797	57022842	protein_coding	1700061G19Rik	exon	ENSMUSG00000024209	NonProperStrand	83	chr4	135340518	135340553	protein_coding	Myom3	intron	ENSMUSG00000037139	NonProperStrand	91	1	-10.5329
chr13	94354734	94354834	SINE	B1_Mur1	Alu	chr13B1_Mur194354717	NonProperStrand	1	chr13	94354617	94354707	SINE	B2_Mm1t	B2	chr13B2_Mm1t94354537	NonProperStrand	1	1	-inf
chr6	95704116	95704220	LINE	L1Md_F2	L1	chr6L1Md_F295703670	NonProperStrand	1	chr17	39848099	39848155	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr3	20052883	20052973	protein_coding	Gyg	intron	ENSMUSG00000019528	NonProperStrand	2	chr3	33949843	33949943	protein_coding	Fxr1	intron	ENSMUSG00000027680	NonProperStrand	2	1	-19.8939
chr2	71397671	71397740	LTR	RMER19C	ERVK	chr2RMER19C71397429	ProperStrand	1	chr17	56613769	56613828	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	1	-inf
chr10	54216854	54216944	LINE	L1Md_A	L1	chr10L1Md_A54214531	ProperStrand	2	chr2	76385670	76385770	protein_coding	Osbpl6	intron	ENSMUSG00000042359	ProperStrand	35	1	-19.6352
chr1	63533251	63533347	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chr1	7122917	7122987	protein_coding	Pcmtd1	intron	ENSMUSG00000051285	ProperStrand	119	1	-6.6992
chr16	91508718	91508750	LINE	Lx	L1	chr16Lx91507671	NonProperStrand	1	chr15	80082880	80082922	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	1	-inf
chr16	95993699	95993752	SINE	B4	B4	chr16B495993692	ProperStrand	1	chr1	4823996	4824092	protein_coding	Lypla1	intron	ENSMUSG00000025903	ProperStrand	29	1	-inf
chr10	40258578	40258638	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr9	20890760	20890830	protein_coding	Raver1	exon	ENSMUSG00000010205	NonProperStrand	43	1	-6.0107
chr5	73543222	73543312	protein_coding	Fryl	intron	ENSMUSG00000070733	NonProperStrand	82	chr19	8871750	8872047	protein_coding	Polr2g	intron	ENSMUSG00000071662	NonProperStrand	28	11	-inf
chr17	39846921	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	145759141	145845726	protein_coding	Wdr63	intron	ENSMUSG00000043020	NonProperStrand	4	1	-3.6552
chrX	73799875	73799975	LINE	L1Md_F2	L1	chrXL1Md_F273799501	ProperStrand	20	chrX	73800060	73824344	LINE	Lx	L1	chrXLx73824068	ProperStrand	7	6	-inf
chr1	34165098	34166185	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr12	54199384	54199438	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-4.4612
chr17	39847536	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	85096816	85096952	SINE	PB1D10	Alu	chr8PB1D1085096808	ProperStrand	1	1	-inf
chr2	29627966	29628075	protein_coding	Trub2	intron	ENSMUSG00000039826	NonProperStrand	115	chr9	29731586	29731607	protein_coding	Ntm	intron	ENSMUSG00000059974	NonProperStrand	29	1	-12.1855
chr7	80066813	80066943	LINE	L1_Mus2	L1	chr7L1_Mus280066164	ProperStrand	10	chr3	86068630	86068653	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	2	-23.3293
chr12	111790266	111790379	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	ProperStrand	236	chr4	5645300	5645335	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	1	-7.4622
chr1	97104349	97104450	LINE	L1Md_F2	L1	chr1L1Md_F297104303	ProperStrand	1	chr14	33968104	33968194	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr15	66296736	66296836	protein_coding	Lrrc6	intron	ENSMUSG00000022375	NonProperStrand	6	chr15	73076785	73076875	protein_coding	Ptk2	intron	ENSMUSG00000022607	NonProperStrand	5	1	-inf
chr14	86778647	86778747	LINE	L1_Mus1	L1	chr14L1_Mus186772887	ProperStrand	1	chr14	86788015	86788105	LINE	Lx5	L1	chr14Lx586787563	ProperStrand	1	1	-inf
chr17	4082153	4082260	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr4	108942004	108942021	SINE	RSINE1	B4	chr4RSINE1108941945	NonProperStrand	2	2	-inf
chr12	100838689	100841378	lincRNA	Gm16956	intron	ENSMUSG00000085349	NonProperStrand	4	chr15	73167971	73168071	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	1	-13.0946
chr7	28398848	28398905	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	15	chr9	123461991	123462057	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr4	139477233	139478938	LINE	L1M4	L1	chr4L1M4139477855	NonProperStrand	7	chr4	139477185	139477234	SINE	B4	B4	chr4B4139477141	NonProperStrand	1	1	-inf
chr17	39845835	39845877	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	29354038	29354106	protein_coding	Pak4	intron	ENSMUSG00000030602	ProperStrand	17	1	-4.2555
chr1	71603714	71603765	protein_coding	Atic	utr5	ENSMUSG00000026192	NonProperStrand	79	chr2	31673545	31673585	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	1	-9.7690
chr17	39846721	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	87427820	87427836	protein_coding	Vps33b	intron	ENSMUSG00000030534	NonProperStrand	1	1	-inf
chr1	78657968	78658058	protein_coding	Acsl3	intron	ENSMUSG00000032883	ProperStrand	34	chr1	78658074	78663211	protein_coding	Utp14b	exon	ENSMUSG00000079470	ProperStrand	12	4	-23.0833
chr3	41573827	41573887	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr3	41561132	41561223	protein_coding	D3Ertd751e	utr3	ENSMUSG00000025766	ProperStrand	46	1	-11.8345
chr2	173781549	173781655	Simple_repeat	(TCTA)n	Simple_repeat	chr2(TCTA)n173781530	ProperStrand	1	chr6	89408675	89408730	protein_coding	Chchd6	intron	ENSMUSG00000030086	ProperStrand	188	1	-inf
chr7	126795987	126796004	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr17	27559682	27560981	protein_coding	Grm4	intron	ENSMUSG00000063239	NonProperStrand	125	1	-7.3092
chr11	120694458	120694520	antisense	Gm11773	.	ENSMUSG00000087638	ProperStrand	4	chr11	120698823	120698875	protein_coding	Ccdc57	intron	ENSMUSG00000048445	NonProperStrand	71	1	-17.4519
chr4	119322935	119322952	LTR	IAPEz-int	ERVK	chr4IAPEz-int119320909	ProperStrand	1	chr9	64287652	64287722	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-inf
chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr13	44869601	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.7306
chr11	107457777	107457864	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	chr6	37948487	37948543	protein_coding	Svopl	intron	ENSMUSG00000029830	NonProperStrand	43	1	-10.2791
chrX	46135924	46136024	LINE	L2a	L2	chrXL2a46135944	ProperStrand	1	chrX	46136199	46136289	LINE	Lx6	L1	chrXLx646136125	ProperStrand	1	1	-inf
chr17	39846721	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	157165505	157165521	protein_coding	Ppef1	intron	ENSMUSG00000062168	ProperStrand	2	1	-5.3533
chr15	72901857	72901905	LINE	Lx4A	L1	chr15Lx4A72901751	ProperStrand	2	chr15	72896032	72896064	SINE	B1_Mus2	Alu	chr15B1_Mus272896026	ProperStrand	1	1	-inf
chr9	40296525	40296620	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-4.7482
chr5	30063362	30064109	protein_coding	Dnajb6	intron	ENSMUSG00000029131	NonProperStrand	15	chr5	66541825	66541872	protein_coding	Rbm47	utr5	ENSMUSG00000070780	ProperStrand	141	1	-13.1284
chr5	65615440	65615504	protein_coding	Wdr19	intron	ENSMUSG00000037890	NonProperStrand	28	chr13	97190553	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.6258
chr14	25867724	25867807	LINE	L1M5	L1	chr14L1M525867554	NonProperStrand	2	chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-15.3270
chr9	99112455	99112524	SINE	B1_Mur1	Alu	chr9B1_Mur199112393	NonProperStrand	1	chr16	35981686	35981765	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	1	-inf
chr11	109011745	109011771	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	18933351	18933367	protein_coding	Xkr5	utr3	ENSMUSG00000039814	ProperStrand	15	1	-8.8900
chr14	19278161	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr4	125575421	125575507	lincRNA	2610028E06Rik	exon	ENSMUSG00000085562	NonProperStrand	78	1	-11.0192
chr11	120610639	120610729	SINE	B1_Mus1	Alu	chr11B1_Mus1120610661	NonProperStrand	1	chr11	120610467	120610567	SINE	B1_Mus2	Alu	chr11B1_Mus2120610495	ProperStrand	8	1	-inf
chr17	39847739	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	113891546	113891622	SINE	B4A	B4	chr13B4A113891540	ProperStrand	1	1	-inf
chr8	96107769	96107845	LINE	L1Md_T	L1	chr8L1Md_T96101289	NonProperStrand	1	chr19	5799812	5799898	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr17	39843854	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	162738085	162738154	SINE	B3	B2	chr1B3162738021	NonProperStrand	1	1	-inf
chr18	7909313	7909370	protein_coding	Wac	intron	ENSMUSG00000024283	ProperStrand	36	chr1	181472962	181473009	protein_coding	Tfb2m	intron	ENSMUSG00000026492	NonProperStrand	3	3	-inf
chr9	93491994	93492013	LINE	Lx8	L1	chr9Lx893491678	ProperStrand	1	chr5	146261118	146261211	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr15	62246606	62246971	LINE	L1_Mm	L1	chr15L1_Mm62246275	NonProperStrand	3	chr17	39847345	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-inf
chr11	75563120	75563220	protein_coding	Ywhae	intron	ENSMUSG00000020849	ProperStrand	38	chr7	141489044	141489134	protein_coding	D7Ertd443e	intron	ENSMUSG00000030994	NonProperStrand	96	1	-11.9999
chr2	22744837	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	122123773	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	2	-6.0104
chr9	78480568	78480618	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr4	145543369	145543450	protein_coding	Gm13248	intron	ENSMUSG00000063245	NonProperStrand	17	1	-10.0571
chr8	78644753	78644843	LTR	MLT1A0	MaLR	chr8MLT1A078644693	ProperStrand	1	chr8	78644826	78644926	LTR	MT2A	ERVL	chr8MT2A78644852	NonProperStrand	1	1	-inf
chr12	99302070	99302167	LINE	Lx8	L1	chr12Lx899301998	ProperStrand	1	chr17	39846462	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	40956544	40956654	LINE	Lx	L1	chr14Lx40955611	ProperStrand	9	chr2	5379293	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.3566
chr5	146260994	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	71652862	71652953	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	1	-3.5555
chr17	35384480	35384570	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	chr2	14028960	14029060	protein_coding	Stam	intron	ENSMUSG00000026718	NonProperStrand	6	1	-18.7753
chr4	24631689	24631779	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	chr13	97190561	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-6.8235
chr17	39845991	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	49947463	49947481	protein_coding	Lypd6	intron	ENSMUSG00000050447	NonProperStrand	6	1	-6.3814
chr6	141128732	141128832	LTR	MLT1B	MaLR	chr6MLT1B141128761	ProperStrand	1	chr6	141129140	141129230	LTR	RMER12	ERVK	chr6RMER12141129020	ProperStrand	1	1	-inf
chr3	8544924	8544986	protein_coding	Stmn2	intron	ENSMUSG00000027500	ProperStrand	66	chr8	72464255	72464327	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	1	-9.9007
chr2	33499220	33499320	antisense	C130021I20Rik	.	ENSMUSG00000052951	ProperStrand	1	chr2	33446487	33446577	protein_coding	Lmx1b	intron	ENSMUSG00000038765	NonProperStrand	4	1	-inf
chr2	25428935	25429025	protein_coding	Mamdc4	intron	ENSMUSG00000026941	NonProperStrand	3	chr2	25429040	25429140	protein_coding	Phpt1	utr3	ENSMUSG00000036504	NonProperStrand	3	2	-20.2273
chr4	19900005	19900027	LINE	Lx5	L1	chr4Lx519899992	ProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr5	28071593	28071635	protein_coding	Paxip1	intron	ENSMUSG00000002221	NonProperStrand	65	chr13	97190541	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.9672
chr14	50928035	50928875	LINE	L1Md_F2	L1	chr14L1Md_F250927873	ProperStrand	1	chr14	18762257	18762354	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	1	-inf
chr1	118683767	118683851	Simple_repeat	(TCTCCC)n	Simple_repeat	chr1(TCTCCC)n118683782	ProperStrand	5	chr6	28694336	28694410	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-11.6758
chr2	176730287	176730403	LINE	L1_Mus1	L1	chr2L1_Mus1176726978	NonProperStrand	2	chr2	177936283	177936305	protein_coding	Phactr3	intron	ENSMUSG00000027525	NonProperStrand	33	1	-20.7426
chr17	39846209	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	53860700	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	24	-4.6930
chr7	89204692	89204737	DNA	MER63B	AcHobo	chr7MER63B89204698	ProperStrand	3	chr7	89237211	89237269	SINE	B1F	Alu	chr7B1F89237212	ProperStrand	1	1	-inf
chr15	99743809	99743883	SINE	ID_B1	B4	chr15ID_B199743819	NonProperStrand	1	chr6	65013591	65013667	protein_coding	Smarcad1	intron	ENSMUSG00000029920	NonProperStrand	17	1	-inf
chr7	23994171	23994194	LINE	L1Md_F2	L1	chr7L1Md_F223994132	ProperStrand	2	chr4	48600609	48600708	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	114	1	-18.1738
chr16	35088054	35088125	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	chr11	102803211	102803243	protein_coding	C1ql1	intron	ENSMUSG00000045532	ProperStrand	9	1	-13.7200
chr12	81367767	81367849	SINE	B4A	B4	chr12B4A81367653	NonProperStrand	1	chr12	81367935	81367997	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n81367923	NonProperStrand	1	1	-inf
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	84390313	84390413	SINE	B3A	B2	chr4B3A84390292	NonProperStrand	1	1	-inf
chr14	74906430	74906530	LINE	L1_Mus1	L1	chr14L1_Mus174905547	ProperStrand	7	chr14	74906566	74906656	LTR	RMER4A	ERVK	chr14RMER4A74906591	NonProperStrand	6	6	-inf
chr17	3108264	3108318	LINE	Lx5	L1	chr17Lx53107642	NonProperStrand	2	chr17	3110020	3110102	LINE	Lx5	L1	chr17Lx53109956	NonProperStrand	1	1	-inf
chr2	110041311	110041329	antisense	Gm13936	.	ENSMUSG00000085444	ProperStrand	9	chr2	122012805	122012902	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	1	-16.8192
chr11	6349428	6349876	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int6349224	ProperStrand	1	chr17	39847611	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846701	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	136985391	136985451	Simple_repeat	(GGA)n	Simple_repeat	chr7(GGA)n136985286	ProperStrand	1	1	-inf
chr2	180613624	180613690	lincRNA	Gm14342	intron	ENSMUSG00000086166	NonProperStrand	22	chr13	3538340	3548944	protein_coding	Gdi2	intron	ENSMUSG00000021218	ProperStrand	39	1	-14.9398
chr13	97190563	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr14	79341009	79341029	protein_coding	1300010F03Rik	intron	ENSMUSG00000058997	NonProperStrand	66	1	-4.9376
chr8	91628825	91628916	LINE	L1_Mus1	L1	chr8L1_Mus191627113	NonProperStrand	5	chr8	91629039	91629140	LINE	L1_Mus1	L1	chr8L1_Mus191628849	NonProperStrand	1	1	-inf
chr4	137557435	137558863	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr8	83943788	83943889	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-6.0191
chr5	76446727	76446827	LINE	L1Md_F2	L1	chr5L1Md_F276446690	ProperStrand	2	chr5	76446591	76446681	SINE	B3	B2	chr5B376446479	ProperStrand	1	1	-inf
chr1	118564832	118564922	LTR	RLTR10C	ERVK	chr1RLTR10C118564486	NonProperStrand	1	chr1	118564930	118565030	LTR	RMER15	ERVL	chr1RMER15118564918	ProperStrand	1	1	-inf
chr5	116084411	116084501	protein_coding	Rab35	intron	ENSMUSG00000029518	NonProperStrand	2	chr8	30150856	30150956	protein_coding	Unc5d	intron	ENSMUSG00000063626	NonProperStrand	11	1	-21.2279
chr11	103677236	103677326	protein_coding	Wnt3	intron	ENSMUSG00000000125	NonProperStrand	13	chr2	119858590	119858690	protein_coding	Pla2g4b	intron	ENSMUSG00000033852	ProperStrand	1	1	-inf
chr1	147304885	147304975	LTR	MYSERV16_I-int	ERVK	chr1MYSERV16_I-int147304907	ProperStrand	2	chr1	147304695	147304795	LTR	RLTR20C	ERVK	chr1RLTR20C147304672	ProperStrand	2	2	-inf
chr2	32541336	32541436	protein_coding-noncoding	Fpgs	utr3	ENSMUSG00000009566	NonProperStrand	4	chr2	32541226	32541317	protein_coding	Fpgs	exon	ENSMUSG00000009566	NonProperStrand	21	4	-inf
chr7	23346895	23346985	LINE	Lx6	L1	chr7Lx623346314	ProperStrand	1	chr14	52542170	52542270	protein_coding	Rnase13	exon	ENSMUSG00000068392	NonProperStrand	1	1	-inf
chr11	119870478	119870568	protein_coding-noncoding	Aatk	utr3	ENSMUSG00000025375	NonProperStrand	2	chr11	119870660	119870760	protein_coding	Aatk	exon	ENSMUSG00000025375	NonProperStrand	61	1	-19.2245
chr9	123461930	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	79361766	79361832	protein_coding	Ddx17	intron	ENSMUSG00000055065	ProperStrand	20	1	-3.0591
chr5	30060685	30060775	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr7	98959998	98960098	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-8.9576
chr17	39847556	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	27900009	27900099	LTR	ORR1A3	MaLR	chr2ORR1A327899933	ProperStrand	1	1	-inf
chr1	65233736	65233854	protein_coding	Pikfyve	intron	ENSMUSG00000025949	ProperStrand	21	chr1	65232193	65232228	protein_coding	Idh1	intron	ENSMUSG00000025950	NonProperStrand	12	1	-17.4057
chr17	39843483	39843526	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	154232596	154232663	protein_coding	Ttc34	intron	ENSMUSG00000046637	ProperStrand	17	1	-4.9181
chr11	58151322	58151412	protein_coding-noncoding	Sh3bp5l	utr5	ENSMUSG00000013646	NonProperStrand	2	chr11	58151219	58151319	protein_coding	Sh3bp5l	intron	ENSMUSG00000013646	NonProperStrand	9	2	-inf
chr17	39843002	39843080	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr6	55055802	55055829	protein_coding	Crhr2	intron	ENSMUSG00000003476	NonProperStrand	33	1	-6.5660
chr5	135305770	135305878	LINE	L1Md_T	L1	chr5L1Md_T135305022	NonProperStrand	1	chr17	39847636	39847817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	14688584	14688668	protein_coding	Lrrc69	intron	ENSMUSG00000023151	ProperStrand	7	chr15	39385287	39385361	protein_coding	Rims2	intron	ENSMUSG00000037386	NonProperStrand	18	1	-18.9495
chr1	105595752	105595826	LINE	Lx9	L1	chr1Lx9105595688	ProperStrand	1	chr17	13715427	13715493	protein_coding	Tcte2	intron	ENSMUSG00000038347	ProperStrand	59	1	-inf
chr5	45403832	45403922	LINE	Lx5	L1	chr5Lx545403029	NonProperStrand	1	chr5	45403941	45404041	LTR	ORR1A2	MaLR	chr5ORR1A245403914	ProperStrand	1	1	-inf
chrX	75416285	75416355	LINE	L1Md_F3	L1	chrXL1Md_F375415090	NonProperStrand	2	chr17	39846807	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr11	102306264	102306367	protein_coding	Fam171a2	intron	ENSMUSG00000034685	ProperStrand	37	1	-10.9199
chr13	97155205	97155462	LINE	L2	L2	chr13L297155043	ProperStrand	1	chr13	97138039	97141961	LTR	ORR1B2	MaLR	chr13ORR1B297141847	NonProperStrand	1	1	-inf
chr9	114544236	114544311	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	chr8	95749021	95749071	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-8.1850
chr13	44767873	44767963	SINE	B3	B2	chr13B344767819	ProperStrand	1	chr13	44768026	44768126	SINE	PB1D9	Alu	chr13PB1D944767997	ProperStrand	1	1	-inf
chr2	166915082	166915182	SINE	B1_Mus1	Alu	chr2B1_Mus1166915055	NonProperStrand	1	chr2	166915238	166915328	SINE	B1_Mus2	Alu	chr2B1_Mus2166915220	NonProperStrand	1	1	-inf
chr12	116391880	116391959	LINE	L1Md_F2	L1	chr12L1Md_F2116391451	NonProperStrand	1	chr5	113990210	113990289	protein_coding	Wscd2	intron	ENSMUSG00000063430	NonProperStrand	42	1	-inf
chr6	3201509	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	19102879	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	1	-4.2407
chr10	29460021	29460042	DNA	BLACKJACK	AcHobo	chr10BLACKJACK29459624	ProperStrand	1	chr17	39846788	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	4082162	4082262	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chrX	138670056	138670146	protein_coding	Nxt2	intron	ENSMUSG00000042271	NonProperStrand	1	1	-inf
chr11	100480406	100480496	protein_coding	Dnajc7	intron	ENSMUSG00000014195	NonProperStrand	4	chr11	100480632	100480732	protein_coding	Nkiras2	utr5	ENSMUSG00000017837	ProperStrand	1	1	-inf
chr15	12226913	12226968	LTR	ORR1B1	MaLR	chr15ORR1B112226897	NonProperStrand	1	chr15	12210042	12210077	SINE	B2_Mm2	B2	chr15B2_Mm212209993	ProperStrand	1	1	-inf
chr15	77769239	77769339	LTR	RLTR14	ERV1	chr15RLTR1477769170	ProperStrand	3	chr15	77769528	77769775	SINE	ID_B1	B4	chr15ID_B177769550	ProperStrand	3	2	-20.2273
chr1	166283105	166283179	protein_coding	Nme7	intron	ENSMUSG00000026575	ProperStrand	6	chr10	80078373	80078448	protein_coding	Scamp4	utr3	ENSMUSG00000078441	NonProperStrand	14	1	-19.6103
chr13	23762301	23762385	LTR	MT2A	ERVL	chr13MT2A23762046	ProperStrand	4	chr17	39847174	39847357	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-8.4845
chr17	39847174	39847354	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	56774165	56805920	protein_coding	Ikbkap	intron	ENSMUSG00000028431	ProperStrand	109	12	-8.3363
chr17	39846964	39846989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	110767712	110767761	SINE	B3	B2	chr5B3110767562	ProperStrand	1	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr7	35477329	35477439	protein_coding	Chst8	intron	ENSMUSG00000060402	ProperStrand	71	1	-7.5128
chr3	90087715	90087805	SINE	B1_Mus2	Alu	chr3B1_Mus290087664	ProperStrand	4	chr3	90087802	90087902	SINE	B3	B2	chr3B390087810	ProperStrand	4	3	-inf
chr11	101445319	101445481	protein_coding	Tmem106a	intron	ENSMUSG00000034947	ProperStrand	25	chr11	6338265	6338324	protein_coding	H2afv	intron	ENSMUSG00000041126	NonProperStrand	22	1	-15.8496
chr17	39846727	39846797	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	70950918	70950998	lincRNA	4931403G20Rik	intron	ENSMUSG00000090912	ProperStrand	3	1	-4.3017
chr14	8879875	8879892	protein_coding	Abhd6	intron	ENSMUSG00000025277	NonProperStrand	3	chr8	114469915	114470008	protein_coding	Gabarapl2	intron	ENSMUSG00000031950	ProperStrand	5	1	-inf
chr4	82778983	82779073	LINE	L1Md_T	L1	chr4L1Md_T82778138	ProperStrand	1	chr4	82779173	82779273	LINE	L1Md_T	L1	chr4L1Md_T82779136	ProperStrand	1	1	-inf
chr17	39847278	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	33745073	33745090	SINE	RSINE1	B4	chr17RSINE133745011	ProperStrand	1	1	-inf
chr7	19190771	19191641	LINE	Lx4A	L1	chr7Lx4A19191285	ProperStrand	4	chr7	19186332	19190768	LTR	ORR1A2-int	MaLR	chr7ORR1A2-int19187453	ProperStrand	4	4	-inf
chr5	115561431	115561463	protein_coding	Acads	intron	ENSMUSG00000029545	NonProperStrand	165	chr5	130906643	130906659	protein_coding	Caln1	intron	ENSMUSG00000060371	NonProperStrand	37	1	-10.9680
chr1	67168363	67170858	protein_coding	Cps1	intron	ENSMUSG00000025991	ProperStrand	5	chr11	85633502	85633640	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-14.6510
chr14	99966823	99966863	LINE	L1_Mus3	L1	chr14L1_Mus399966824	ProperStrand	14	chr14	99969834	99969864	LINE	Lx8	L1	chr14Lx899969544	ProperStrand	2	1	-19.7109
chr11	101168753	101168845	SINE	PB1D9	Alu	chr11PB1D9101168703	NonProperStrand	1	chr7	28185878	28185935	protein_coding	Spnb4	intron	ENSMUSG00000011751	NonProperStrand	106	1	-inf
chr18	10813854	10813910	protein_coding	Mib1	utr3	ENSMUSG00000024294	ProperStrand	51	chr16	17278676	17278743	protein_coding	Tmem191c	utr3	ENSMUSG00000055692	ProperStrand	34	1	-13.5005
chr17	39847659	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	71603880	71603924	LTR	MYSERV6-int	ERVK	chr6MYSERV6-int71603198	NonProperStrand	3	1	-4.3512
chr19	21783196	21783282	LINE	L1VL4	L1	chr19L1VL421781544	ProperStrand	4	chr19	45754440	45754469	LTR	MT2A	ERVL	chr19MT2A45754412	ProperStrand	1	1	-inf
chr9	112181649	112181667	lincRNA	2900079G21Rik	intron	ENSMUSG00000087038	NonProperStrand	3	chr11	87452138	87452187	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-14.9081
chr11	104875368	104875458	LINE	L1MEg	L1	chr11L1MEg104875201	ProperStrand	1	chr11	104875033	104875133	SINE	PB1D10	Alu	chr11PB1D10104875030	NonProperStrand	1	1	-inf
chr8	110882925	110883018	LTR	MTA_Mm-int	MaLR	chr8MTA_Mm-int110882895	NonProperStrand	1	chr8	110883924	110884068	LTR	MTA_Mm	MaLR	chr8MTA_Mm110883992	NonProperStrand	1	1	-inf
chr17	39847060	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	105190830	105190920	SINE	MIR	MIR	chr4MIR105190742	NonProperStrand	1	1	-inf
chr11	20211817	20211864	protein_coding	Slc1a4	intron	ENSMUSG00000020142	NonProperStrand	34	chr12	71304026	71304063	protein_coding	Pygl	intron	ENSMUSG00000021069	ProperStrand	7	1	-17.5500
chr6	3201529	3201585	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	23208517	23208535	protein_coding	Nek5	intron	ENSMUSG00000037738	ProperStrand	19	1	-5.0638
chr1	25250340	25250440	protein_coding	Bai3	intron	ENSMUSG00000033569	NonProperStrand	16	chr1	137262479	137262569	protein_coding	Lmod1	intron	ENSMUSG00000048096	ProperStrand	4	1	-inf
chr8	91448030	91448109	SINE	MIRb	MIR	chr8MIRb91447882	ProperStrand	1	chr19	4579493	4579562	protein_coding	Pcx	intron	ENSMUSG00000024892	ProperStrand	54	1	-inf
chr17	39846595	39846618	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	107883807	107883841	protein_coding	Zyg11a	intron	ENSMUSG00000034645	ProperStrand	2	1	-5.3533
chr11	115655380	115655454	protein_coding	2310067B10Rik	exon	ENSMUSG00000020747	NonProperStrand	47	chr11	115699153	115699325	protein_coding	Llgl2	intron	ENSMUSG00000020782	NonProperStrand	30	3	-20.1508
chr17	39847733	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	54948581	54948597	LTR	MLT1A0	MaLR	chr9MLT1A054948425	NonProperStrand	1	1	-inf
chr12	91648134	91648236	LTR	MT2B2	ERVL	chr12MT2B291647825	NonProperStrand	1	chr12	91648231	91648321	SINE	B2_Mm2	B2	chr12B2_Mm291648218	ProperStrand	1	1	-inf
chr15	58994331	58994431	LTR	IAPEz-int	ERVK	chr15IAPEz-int58993710	ProperStrand	17	chr4	149026692	149026782	protein_coding	Pik3cd	intron	ENSMUSG00000039936	ProperStrand	144	3	-20.3435
chrX	101129862	101129912	LINE	Lx9	L1	chrXLx9101129810	NonProperStrand	1	chr8	109920253	109920355	protein_coding	Nqo1	intron	ENSMUSG00000003849	NonProperStrand	8	1	-inf
chr11	115850897	115851034	protein_coding	Itgb4	intron	ENSMUSG00000020758	ProperStrand	37	chr11	118409635	118409738	protein_coding	Rbfox3	intron	ENSMUSG00000025576	ProperStrand	62	1	-12.9346
chr6	149053639	149053739	LTR	ORR1B2-int	MaLR	chr6ORR1B2-int149053609	NonProperStrand	1	chr6	149053308	149053398	LTR	ORR1C1	MaLR	chr6ORR1C1149053257	NonProperStrand	1	1	-inf
chr17	39847037	39847169	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	25612147	25612163	LTR	ORR1B2	MaLR	chr2ORR1B225612030	ProperStrand	1	1	-inf
chr1	109731864	109731964	LINE	L1Md_F2	L1	chr1L1Md_F2109726996	NonProperStrand	1	chr1	109732017	109732107	LINE	L1Md_F2	L1	chr1L1Md_F2109732004	NonProperStrand	1	1	-inf
chr4	105055949	105056049	SINE	MIRm	MIR	chr4MIRm105055879	ProperStrand	2	chr11	69669660	69669750	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	2	-inf
chr9	110281287	110281336	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr17	66485713	66485752	protein_coding	Ddx11	utr5	ENSMUSG00000035842	ProperStrand	5	1	-12.7186
chr12	87437685	87437804	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	78	chr16	23110846	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-11.3649
chr5	107212518	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr15	76372141	76372256	protein_coding	Slc52a2	utr3	ENSMUSG00000022560	ProperStrand	7	1	-16.6655
chr3	117075507	117075597	LTR	RMER12	ERVK	chr3RMER12117075514	ProperStrand	1	chr3	117075373	117075473	Simple_repeat	(GAAAA)n	Simple_repeat	chr3(GAAAA)n117075305	NonProperStrand	1	1	-inf
chr17	39846452	39846508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	102185074	102185120	SINE	B3A	B2	chrXB3A102185029	ProperStrand	4	1	-3.6552
chr3	95660816	95661389	lincRNA	Gm16884	intron	ENSMUSG00000087673	ProperStrand	40	chr9	123462079	123462173	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.4283
chr15	31599747	31599817	LTR	MTB_Mm-int	MaLR	chr15MTB_Mm-int31599421	NonProperStrand	5	chr15	31599214	31599294	LTR	MTB_Mm	MaLR	chr15MTB_Mm31599012	NonProperStrand	3	3	-inf
chr17	39847159	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	49236475	49236611	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	14	-3.5582
chr3	140196689	140196779	LINE	Lx8	L1	chr3Lx8140196360	NonProperStrand	2	chr9	119386759	119386859	LINE	L2	L2	chr9L2119386768	NonProperStrand	2	2	-inf
chr16	8693036	8693062	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.3152
chr2	181351940	181352043	protein_coding	Prpf6	intron	ENSMUSG00000002455	ProperStrand	86	chr6	38790198	38790314	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	1	-10.7202
chr10	101071594	101071684	LINE	Lx8	L1	chr10Lx8101071471	ProperStrand	1	chr18	9877352	9877452	protein_coding	Colec12	utr3	ENSMUSG00000036103	NonProperStrand	14	1	-inf
chr15	36605875	36608341	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	83	chr8	72418283	72418383	protein_coding	Ndufa13	intron	ENSMUSG00000036199	ProperStrand	28	1	-12.9125
chr4	133966982	133967865	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	chr18	34970654	34970754	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-12.1914
chr7	24997166	24997221	SINE	B2_Mm2	B2	chr7B2_Mm224997037	NonProperStrand	1	chr8	126944846	126944931	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-inf
chr5	23230879	23230969	LTR	SRV_MM-int	ERVK	chr5SRV_MM-int23230645	NonProperStrand	1	chr5	23231300	23231400	SINE	B1_Mm	Alu	chr5B1_Mm23231270	NonProperStrand	1	1	-inf
chr16	30349740	30349834	protein_coding	Atp13a3	intron	ENSMUSG00000022533	ProperStrand	59	chr12	109649211	109650098	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-7.8256
chr10	18642320	18642420	DNA	URR1A	MER1_type	chr10URR1A18642235	NonProperStrand	1	chr10	18642588	18642678	SINE	B4A	B4	chr10B4A18642447	ProperStrand	1	1	-inf
chr8	72949131	72949157	protein_coding	Crtc1	intron	ENSMUSG00000003575	ProperStrand	20	chr16	34035105	34035121	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-11.3642
chr4	7534903	7534923	SINE	B1_Mur4	Alu	chr4B1_Mur47534905	ProperStrand	1	chr9	123461884	123461911	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	97184652	97184740	SINE	B1_Mus2	Alu	chr6B1_Mus297184571	ProperStrand	1	chr16	92077251	92077309	protein_coding	Slc5a3	utr5	ENSMUSG00000089774	ProperStrand	25	1	-inf
chr17	39847736	39847795	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	88049856	88049925	SINE	ID4	ID	chr11ID488049835	ProperStrand	2	2	-inf
chr15	80078506	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-4.0150
chr9	110281288	110281325	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr7	13282538	13285356	protein_coding	Vmn2r56	intron	ENSMUSG00000090762	NonProperStrand	118	1	-6.2231
chr12	86494351	86494383	Simple_repeat	(TTCC)n	Simple_repeat	chr12(TTCC)n86494357	ProperStrand	1	chr12	86491061	86491176	protein_coding	Rps6kl1	intron	ENSMUSG00000019235	NonProperStrand	221	1	-inf
chr11	69688832	69688889	SINE	RSINE1	B4	chr11RSINE169688813	NonProperStrand	1	chr9	55154231	55154251	protein_coding-noncoding	Nrg4	utr3	ENSMUSG00000032311	NonProperStrand	1	1	-inf
chr5	121578393	121579612	LINE	L1MA5	L1	chr5L1MA5121578316	ProperStrand	1	chr5	121580624	121580652	protein_coding	Ptpn11	utr3	ENSMUSG00000043733	ProperStrand	45	1	-inf
chr17	39846410	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	28418110	28418140	LTR	MLT1B	MaLR	chr5MLT1B28418038	ProperStrand	6	2	-5.1926
chr9	113858015	113858071	protein_coding	Ubp1	intron	ENSMUSG00000009741	ProperStrand	58	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.6959
chr5	37256400	37256468	SINE	B3	B2	chr5B337256327	NonProperStrand	1	chr5	37264087	37264127	protein_coding	Ppp2r2c	intron	ENSMUSG00000029120	ProperStrand	21	1	-inf
chr6	39419335	39419409	protein_coding	Dennd2a	intron	ENSMUSG00000038456	ProperStrand	103	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.9179
chrX	8143732	8143877	LINE	L1_Mm	L1	chrXL1_Mm8143798	NonProperStrand	4	chr13	44869606	44869684	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.0813
chr11	70720852	70720942	protein_coding	Rabep1	intron	ENSMUSG00000020817	ProperStrand	26	chr18	12199632	12200782	protein_coding	6030446N20Rik	intron	ENSMUSG00000049411	ProperStrand	38	1	-14.6453
chr6	128839098	128839154	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	chr9	105066743	105066826	protein_coding	Nek11	intron	ENSMUSG00000035032	NonProperStrand	22	1	-16.5131
chr9	123462126	123462191	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	145904606	145904669	protein_coding	4930529M08Rik	intron	ENSMUSG00000037143	NonProperStrand	15	1	-3.5950
chr4	132319489	132319542	SINE	B1_Mur4	Alu	chr4B1_Mur4132319495	ProperStrand	1	chr8	108896109	108896152	lincRNA	Gm17245	intron	ENSMUSG00000067626	NonProperStrand	77	1	-inf
chr8	4414702	4414792	LINE	Lx8	L1	chr8Lx84414412	NonProperStrand	1	chr8	4414812	4414912	SINE	B4A	B4	chr8B4A4414825	ProperStrand	1	1	-inf
chr14	25610677	25610767	LTR	MTE2a	MaLR	chr14MTE2a25610614	NonProperStrand	1	chr14	25610770	25610870	LTR	MTE2a	MaLR	chr14MTE2a25610798	NonProperStrand	1	1	-inf
chr17	39848505	39848559	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	95068145	95068189	protein_coding	Prune	intron	ENSMUSG00000015711	ProperStrand	19	1	-3.7232
chr5	138404922	138405012	LINE	Lx9	L1	chr5Lx9138404869	ProperStrand	1	chr5	138404502	138404602	LTR	RLTR42-int	ERVK	chr5RLTR42-int138404429	NonProperStrand	1	1	-inf
chr7	133054046	133054145	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	chr5	21048906	21048953	protein_coding	Fbxl13	intron	ENSMUSG00000048520	ProperStrand	33	2	-10.3219
chr4	115728599	115728689	LTR	RMER4B	ERVK	chr4RMER4B115728554	NonProperStrand	1	chr4	115728353	115728453	SINE	B1_Mur1	Alu	chr4B1_Mur1115728367	NonProperStrand	1	1	-inf
chr3	98314254	98314291	LTR	MER21B	ERV1	chr3MER21B98314199	ProperStrand	6	chr9	123461947	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr1	134309051	134309151	DNA	MER5A1	MER1_type	chr1MER5A1134309045	NonProperStrand	1	chr1	134317118	134317449	protein_coding	Dstyk	intron	ENSMUSG00000042046	NonProperStrand	72	1	-inf
chr2	130275995	130276109	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	132	chr6	33712630	33712659	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-5.2652
chr4	121205642	121205693	LINE	L1_Mm	L1	chr4L1_Mm121205208	ProperStrand	1	chr4	121206123	121206171	LINE	L1_Mm	L1	chr4L1_Mm121205999	ProperStrand	1	1	-inf
chr12	17284072	17284172	protein_coding-noncoding	Pdia6	utr5	ENSMUSG00000020571	ProperStrand	2	chr12	17283223	17283954	protein_coding	Pdia6	intron	ENSMUSG00000020571	ProperStrand	22	1	-21.6660
chr8	65977379	65977479	LINE	Lx4B	L1	chr8Lx4B65977308	NonProperStrand	1	chr8	65977152	65977242	LTR	ORR1B1	MaLR	chr8ORR1B165976866	NonProperStrand	1	1	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	114363684	114363772	LTR	MLT2B1	ERVL	chr5MLT2B1114363651	ProperStrand	1	1	-inf
chr18	53740008	53740121	SINE	B1_Mur1	Alu	chr18B1_Mur153739956	NonProperStrand	1	chr18	53730978	53731006	protein_coding	Prdm6	intron	ENSMUSG00000069378	NonProperStrand	20	1	-inf
chr18	25150628	25150680	protein_coding	Fhod3	intron	ENSMUSG00000034295	NonProperStrand	24	chr10	69415101	69415184	protein_coding	Ank3	intron	ENSMUSG00000069601	ProperStrand	58	1	-13.9492
chr17	47900543	47900666	protein_coding	Tfeb	intron	ENSMUSG00000023990	NonProperStrand	85	chr16	44834654	44834676	protein_coding	Cd200r4	intron	ENSMUSG00000062082	ProperStrand	3	1	-17.6478
chr6	72861472	72861572	LTR	MTD	MaLR	chr6MTD72861398	ProperStrand	1	chr6	72855890	72855930	SINE	ID_B1	B4	chr6ID_B172855728	NonProperStrand	1	1	-inf
chr3	41614494	41614570	LINE	Lx5	L1	chr3Lx541612244	ProperStrand	43	chr9	103354874	103354960	protein_coding	Bfsp2	intron	ENSMUSG00000032556	ProperStrand	72	1	-12.3284
chr15	102338939	102339802	protein_coding-noncoding	Map3k12	utr3	ENSMUSG00000023050	ProperStrand	14	chr15	102338829	102340395	protein_coding	Map3k12	utr5	ENSMUSG00000023050	ProperStrand	33	10	-inf
chr10	128943818	128944044	LTR	IAPEY3-int	ERVK	chr10IAPEY3-int128943821	ProperStrand	2	chr10	128943615	128943814	Low_complexity	GA-rich	Low_complexity	chr10GA-rich128943729	ProperStrand	2	2	-inf
chr17	39847763	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	73941948	73941964	protein_coding	Kdm4c	intron	ENSMUSG00000028397	NonProperStrand	3	1	-4.3512
chr19	14298240	14298340	LINE	Lx4A	L1	chr19Lx4A14297707	NonProperStrand	1	chr19	14298498	14298588	LTR	MER68	ERVL	chr19MER6814298425	NonProperStrand	1	1	-inf
chr15	78802496	78802584	protein_coding	Triobp	intron	ENSMUSG00000033088	NonProperStrand	10	chr7	122978593	122978658	protein_coding	Sox6	intron	ENSMUSG00000051910	NonProperStrand	155	1	-13.7837
chr2	75666725	75666748	SINE	ID_B1	B4	chr2ID_B175666626	ProperStrand	1	chr4	12235555	12235585	lincRNA	Gm11846	intron	ENSMUSG00000085909	ProperStrand	1	1	-inf
chr8	72568863	72568910	protein_coding	Sugp1	intron	ENSMUSG00000011306	NonProperStrand	4	chr9	8127666	8127723	protein_coding	AK129341	intron	ENSMUSG00000040729	ProperStrand	8	1	-inf
chr4	18508139	18508158	processed_transcript	Gm11867	.	ENSMUSG00000087402	NonProperStrand	11	chr3	84898533	84898562	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-13.4000
chr2	129275562	129281908	LINE	L1Md_T	L1	chr2L1Md_T129273882	ProperStrand	2	chr2	129281927	129282017	SINE	B1_Mur4	Alu	chr2B1_Mur4129281937	ProperStrand	1	1	-inf
chr5	118763785	118763863	Low_complexity	T-rich	Low_complexity	chr5T-rich118763797	ProperStrand	1	chr5	118763693	118763766	SINE	PB1D10	Alu	chr5PB1D10118763652	NonProperStrand	1	1	-inf
chr17	39846754	39846782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	14865938	14865956	protein_coding	Hephl1	intron	ENSMUSG00000031936	NonProperStrand	3	1	-4.3017
chr12	99905782	99905886	protein_coding	Spata7	intron	ENSMUSG00000021007	ProperStrand	45	chr15	80082458	80082480	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	1	-8.6649
chr17	39847271	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	130047690	130047776	protein_coding	Tmc2	intron	ENSMUSG00000060332	ProperStrand	5	2	-7.5968
chr2	102829376	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr10	77362323	77362412	protein_coding	Lrrc3	utr3	ENSMUSG00000051652	ProperStrand	2	1	-17.3471
chr3	157544764	157544841	LTR	RMER17C	ERVK	chr3RMER17C157544545	NonProperStrand	2	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr9	108563154	108563193	LINE	L2a	L2	chr9L2a108562910	ProperStrand	3	chr17	39847762	39847791	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39846720	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	36967235	36967256	protein_coding	Adad1	intron	ENSMUSG00000027719	ProperStrand	5	1	-3.1907
chr14	59627273	59627373	LTR	RLTR16	ERVK	chr14RLTR1659626922	ProperStrand	5	chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr17	39847735	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	36989803	37014527	protein_coding	Adad1	intron	ENSMUSG00000027719	ProperStrand	5	2	-5.9065
chr17	39846452	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	122316077	122316138	LTR	RMER17C	ERVK	chr6RMER17C122315788	ProperStrand	3	1	-4.3017
chr4	41267549	41267600	LINE	Lx5	L1	chr4Lx541266766	NonProperStrand	2	chr17	39847233	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39846419	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	121270691	121271317	protein_coding	Serinc4	intron	ENSMUSG00000046110	ProperStrand	2	1	-5.3533
chr4	49896344	49896360	LINE	L1_Mus2	L1	chr4L1_Mus249896119	NonProperStrand	1	chr17	39846583	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr16	23111616	23111682	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr16	23111696	23111735	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	7	1	-14.3379
chr8	23302500	23302590	LINE	Lx2A1	L1	chr8Lx2A123302484	ProperStrand	1	chr8	22983220	22983320	LTR	IAPEy-int	ERVK	chr8IAPEy-int22983104	NonProperStrand	1	1	-inf
chr5	115490324	115490387	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr1	161988162	161988178	protein_coding	4930523C07Rik	intron	ENSMUSG00000050883	NonProperStrand	4	1	-14.8399
chr7	116269551	116269641	SINE	PB1D10	Alu	chr7PB1D10116269541	ProperStrand	3	chr7	116269439	116269539	Simple_repeat	(TTTCC)n	Simple_repeat	chr7(TTTCC)n116269448	NonProperStrand	4	3	-inf
chr11	53261617	53261734	SINE	B4A	B4	chr11B4A53261632	NonProperStrand	4	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr9	110281297	110281325	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr16	23111732	23111765	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	7	1	-11.9777
chr15	38071616	38071688	LTR	MurERV4-int	ERVK	chr15MurERV4-int38070365	NonProperStrand	5	chr15	38071895	38071951	SINE	B1_Mus2	Alu	chr15B1_Mus238071825	NonProperStrand	1	1	-inf
chr1	136260754	136260854	SINE	PB1D10	Alu	chr1PB1D10136260766	ProperStrand	1	chr9	123461921	123462011	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	120894955	120895045	LTR	ORR1C2-int	MaLR	chr4ORR1C2-int120894805	NonProperStrand	9	chr4	120895051	120895151	SINE	B1_Mur1	Alu	chr4B1_Mur1120895070	ProperStrand	6	6	-inf
chr9	123461829	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr6	39354052	39354142	protein_coding	Mkrn1	intron	ENSMUSG00000029922	ProperStrand	15	1	-3.5950
chr9	60371497	60371597	SINE	B3A	B2	chr9B3A60371521	ProperStrand	1	chr9	60371208	60371298	SINE	PB1D10	Alu	chr9PB1D1060371196	ProperStrand	1	1	-inf
chr2	106730379	106730453	SINE	MIRc	MIR	chr2MIRc106730358	NonProperStrand	1	chr17	44161723	44161746	protein_coding	Rcan2	intron	ENSMUSG00000039601	ProperStrand	6	1	-inf
chr16	4617951	4617996	protein_coding	Pam16	exon	ENSMUSG00000014301	ProperStrand	15	chr13	97190568	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.8902
chr18	35252747	35253701	LTR	MTD	MaLR	chr18MTD35253532	NonProperStrand	2	chr18	35251269	35252703	SINE	B1F	Alu	chr18B1F35252561	ProperStrand	3	2	-inf
chr13	56463735	56464960	LTR	RMER6B	ERVK	chr13RMER6B56463474	ProperStrand	5	chr6	122731397	122731503	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-14.1801
chr9	22701414	22701504	LINE	L1_Mus1	L1	chr9L1_Mus122701404	NonProperStrand	2	chr9	22701512	22701614	LINE	Lx8	L1	chr9Lx822701526	NonProperStrand	4	2	-inf
chr9	20889509	20889554	protein_coding	Raver1	intron	ENSMUSG00000010205	NonProperStrand	43	chr2	44713647	44713756	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	85	1	-11.9942
chr16	91027134	91027259	protein_coding	Gcfc1	intron	ENSMUSG00000022974	ProperStrand	18	chr14	60864106	60864157	protein_coding	Nupl1	intron	ENSMUSG00000063895	NonProperStrand	29	1	-15.9264
chr11	13110314	13110332	LINE	L1Md_F	L1	chr11L1Md_F13108161	ProperStrand	1	chr12	17416099	17416746	protein_coding	Nol10	intron	ENSMUSG00000061458	ProperStrand	49	1	-inf
chr14	122711577	122711628	protein_coding	Clybl	intron	ENSMUSG00000025545	ProperStrand	59	chr4	55035677	55035738	protein_coding	Zfp462	intron	ENSMUSG00000060206	ProperStrand	174	1	-9.9204
chr4	24602484	24602574	protein_coding-noncoding	Klhl32	utr3	ENSMUSG00000040387	NonProperStrand	2	chr4	24602655	24602754	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-18.4181
chr10	40258543	40258633	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr13	29823587	29823687	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	2	-3.1272
chr17	5519941	5520060	protein_coding	Zdhhc14	intron	ENSMUSG00000034265	ProperStrand	114	chr18	80295148	80295166	protein_coding	Pard6g	intron	ENSMUSG00000056214	ProperStrand	48	1	-11.1826
chr2	47309509	47309599	LINE	L1Md_F2	L1	chr2L1Md_F247309197	NonProperStrand	1	chr2	47309112	47309212	LINE	Lx9	L1	chr2Lx947308991	NonProperStrand	1	1	-inf
chr14	61430940	61431003	protein_coding	Mipep	intron	ENSMUSG00000021993	NonProperStrand	22	chr14	49090484	49090576	protein_coding	6720456H20Rik	intron	ENSMUSG00000036339	ProperStrand	7	1	-18.8173
chr8	45305847	45305864	LINE	L1MCb	L1	chr8L1MCb45305797	NonProperStrand	4	chr9	64174982	64175300	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-14.6259
chr17	39846453	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	13086563	13086594	protein_coding-noncoding	Pcid2	utr3	ENSMUSG00000038542	ProperStrand	1	1	-inf
chr3	104783383	104783702	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int104782307	ProperStrand	14	chr9	123461953	123462032	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr2	167064721	167064814	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr16	33202473	33202527	protein_coding	Osbpl11	intron	ENSMUSG00000022807	ProperStrand	29	1	-12.8895
chr9	21567768	21567868	SINE	B2_Mm1a	B2	chr9B2_Mm1a21567665	NonProperStrand	2	chr9	21568523	21568613	SINE	B4A	B4	chr9B4A21568471	ProperStrand	2	2	-inf
chr2	32328249	32328273	SINE	B3	B2	chr2B332328148	ProperStrand	1	chr2	32328500	32328603	SINE	B4A	B4	chr2B4A32328525	ProperStrand	1	1	-inf
chr14	26663520	26663611	protein_coding	Anxa11	intron	ENSMUSG00000021866	NonProperStrand	9	chr1	172134349	172134404	protein_coding	Uhmk1	intron	ENSMUSG00000026667	NonProperStrand	15	1	-18.6074
chr14	3824897	3824997	protein_coding	Gm3002	intron	ENSMUSG00000079399	ProperStrand	51	chr14	7552639	7552729	protein_coding	Gm8050	utr5	ENSMUSG00000091814	ProperStrand	1	1	-inf
chr5	105118360	105118376	Unknown	MurSatRep1	Unknown	chr5MurSatRep1105117495	NonProperStrand	1	chr7	123163162	123163247	protein_coding	Sox6	intron	ENSMUSG00000051910	NonProperStrand	155	1	-inf
chr17	39848506	39848647	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr18	63078741	63078757	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	2	-4.9376
chr3	8953728	9004423	protein_coding	Tpd52	exon	ENSMUSG00000027506	ProperStrand	278	chr8	79680588	79680688	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	1	-7.8140
chr10	77193025	77193125	LTR	RLTR12B	ERVK	chr10RLTR12B77192969	ProperStrand	2	chr7	140955749	140955839	protein_coding	Dhx32	intron	ENSMUSG00000030986	ProperStrand	21	1	-20.6625
chr10	81387745	81387845	LTR	MT2B	ERVL	chr10MT2B81387604	NonProperStrand	3	chr10	81387408	81387724	SINE	B1_Mus2	Alu	chr10B1_Mus281387359	NonProperStrand	3	3	-inf
chr14	101565493	101565593	LINE	L1_Mm	L1	chr14L1_Mm101564789	ProperStrand	1	chr14	101565636	101565727	LINE	L1_Mus1	L1	chr14L1_Mus1101565599	NonProperStrand	1	1	-inf
chr11	93955516	93955618	protein_coding	Spag9	intron	ENSMUSG00000020859	NonProperStrand	74	chr5	114852015	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-8.8829
chr2	22744838	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	82740160	82740211	protein_coding	Mff	intron	ENSMUSG00000026150	ProperStrand	14	2	-15.4747
chr8	111167495	111167585	SINE	B1_Mur1	Alu	chr8B1_Mur1111167470	NonProperStrand	5	chr8	111167366	111167466	SINE	MIR	MIR	chr8MIR111167359	NonProperStrand	5	5	-inf
chr10	23785752	23785816	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr12	78350926	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-4.0080
chr3	85686699	85686755	protein_coding	Glt28d2	intron	ENSMUSG00000031286	ProperStrand	3	chr2	5379277	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr17	65600901	65600930	LINE	Lx8	L1	chr17Lx865598906	NonProperStrand	3	chr1	84140836	84140917	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	1	-16.6131
chr8	22492389	22492460	LINE	L1VL1	L1	chr8L1VL122490074	NonProperStrand	11	chr5	107901919	107902053	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-13.9232
chr7	47188550	47188581	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr12	78350927	78351023	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-5.4852
chr18	18715133	18715223	LTR	MuLV-int	ERV1	chr18MuLV-int18715153	ProperStrand	1	chr18	18715624	18715724	LTR	MuRRS4-int	ERV1	chr18MuRRS4-int18715300	ProperStrand	1	1	-inf
chr11	8434214	8434288	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr4	83256238	83256302	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-5.7191
chr6	112665280	112672165	LTR	MTA_Mm	MaLR	chr6MTA_Mm112665158	ProperStrand	2	chr6	112672178	112675813	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	95	2	-inf
chrX	74344550	74344567	LINE	L1Md_F2	L1	chrXL1Md_F274343867	ProperStrand	4	chr17	39846720	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr19	19470822	19470912	LINE	L1VL4	L1	chr19L1VL419470607	ProperStrand	1	chr19	19470529	19470629	SINE	B4	B4	chr19B419470493	ProperStrand	1	1	-inf
chr17	39847739	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	97545676	97545692	protein_coding	Sytl2	intron	ENSMUSG00000030616	NonProperStrand	2	1	-5.4040
chr13	80746586	80746686	LINE	L1_Mus4	L1	chr13L1_Mus480746571	NonProperStrand	1	chr13	80746462	80746552	LINE	Lx5	L1	chr13Lx580745856	NonProperStrand	1	1	-inf
chr11	120580024	120580245	protein_coding-noncoding	Lrrc45	utr5	ENSMUSG00000025145	NonProperStrand	7	chr11	120579690	120580012	protein_coding	Lrrc45	intron	ENSMUSG00000025145	NonProperStrand	47	5	-inf
chr2	114148255	114148355	LINE	L1M4	L1	chr2L1M4114148227	ProperStrand	1	chr2	114147625	114147715	LINE	L1MC5	L1	chr2L1MC5114147613	ProperStrand	1	1	-inf
chr17	39846847	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	101999924	101999981	SINE	B1_Mus2	Alu	chr7B1_Mus2101999823	NonProperStrand	1	1	-inf
chr16	11222591	11222675	lincRNA	2610020C07Rik	intron	ENSMUSG00000091524	ProperStrand	17	chr9	123462012	123462076	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr12	41586878	41586968	LTR	RLTR10A	ERVK	chr12RLTR10A41586640	ProperStrand	1	chr12	41587043	41587143	LTR	RMER6D	ERVK	chr12RMER6D41586990	ProperStrand	1	1	-inf
chr10	82157665	82157737	LINE	Lx5	L1	chr10Lx582157325	ProperStrand	2	chr11	85648854	85648930	protein_coding	Tbx2	intron	ENSMUSG00000000093	ProperStrand	8	1	-23.4058
chr17	46687528	46687625	protein_coding	Srf	intron	ENSMUSG00000015605	ProperStrand	13	chr9	78479110	78479129	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-10.6116
chr7	102434384	102434474	LINE	L1Md_A	L1	chr7L1Md_A102434211	NonProperStrand	1	chr7	102434051	102434151	LTR	MTA_Mm	MaLR	chr7MTA_Mm102433742	ProperStrand	1	1	-inf
chr17	70963690	70963782	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	55971316	55971377	protein_coding	Rpl24	intron	ENSMUSG00000022601	ProperStrand	72	1	-5.8487
chr9	123394961	123409623	protein_coding	Limd1	intron	ENSMUSG00000025239	ProperStrand	12	chrX	20441473	20441520	protein_coding	Syn1	intron	ENSMUSG00000037217	NonProperStrand	7	1	-20.6365
chr17	39848099	39848154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	22950132	22950225	protein_coding	Acbd5	intron	ENSMUSG00000026781	NonProperStrand	6	1	-5.7734
chr8	80987500	80987522	LINE	L1MB3	L1	chr8L1MB380987174	ProperStrand	1	chr13	97190551	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr7	142380897	142380987	LINE	Lx8	L1	chr7Lx8142380797	NonProperStrand	4	chr7	142380706	142380806	Simple_repeat	(TTC)n	Simple_repeat	chr7(TTC)n142380692	NonProperStrand	1	1	-inf
chr4	65613114	65613149	protein_coding	Astn2	intron	ENSMUSG00000028373	NonProperStrand	50	chr5	125102877	125102902	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	301	1	-9.1590
chr9	42078578	42078658	LINE	L1M3	L1	chr9L1M342078557	ProperStrand	1	chr4	43492787	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-inf
chr11	20544012	20544066	protein_coding	Sertad2	intron	ENSMUSG00000049800	ProperStrand	32	chrX	152266658	152266702	protein_coding	Gm15155	intron	ENSMUSG00000055109	ProperStrand	121	1	-11.8839
chr14	86053845	86053935	LINE	L1M2	L1	chr14L1M286053570	NonProperStrand	1	chr14	86063010	86063110	LINE	L1Md_F2	L1	chr14L1Md_F286062639	ProperStrand	1	1	-inf
chr17	24720816	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr10	62907065	62907128	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-7.9026
chr11	50308871	50308913	DNA	Charlie1	MER1_type	chr11Charlie150308463	NonProperStrand	4	chr11	48802411	48803426	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-14.9500
chr5	139823925	139824044	SINE	B4A	B4	chr5B4A139823897	ProperStrand	1	chr5	147526951	147526968	SINE	ID4	ID	chr5ID4147526942	ProperStrand	3	1	-inf
chr8	111543710	111543799	LTR	ORR1D2	MaLR	chr8ORR1D2111543439	NonProperStrand	2	chr2	154518818	154518851	protein_coding	Chmp4b	intron	ENSMUSG00000038467	ProperStrand	81	2	-inf
chr6	30402108	30402137	protein_coding	Klhdc10	utr3	ENSMUSG00000029775	ProperStrand	8	chr6	30441803	30441842	protein_coding	Tmem209	intron	ENSMUSG00000029782	NonProperStrand	42	1	-16.9144
chr14	86782438	86782567	LTR	ORR1A1	MaLR	chr14ORR1A186782363	ProperStrand	1	chr14	86780954	86780984	SINE	B3A	B2	chr14B3A86780956	NonProperStrand	1	1	-inf
chr7	3656149	3656879	protein_coding-noncoding	Rps9	utr5	ENSMUSG00000006333	ProperStrand	5	chr7	3655901	3656071	protein_coding	Rps9	utr5	ENSMUSG00000006333	ProperStrand	10	2	-inf
chr3	19256853	19260239	LINE	L1Md_F	L1	chr3L1Md_F19255878	NonProperStrand	3	chr17	39847440	39847498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chrX	144369641	144369741	LINE	L1Md_F2	L1	chrXL1Md_F2144364725	ProperStrand	5	chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr5	146261040	146261101	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	80091780	80091851	LTR	IAPLTR2_Mm	ERVK	chr7IAPLTR2_Mm80091517	ProperStrand	10	1	-8.6697
chr15	81037657	81037757	LTR	ORR1A4	MaLR	chr15ORR1A481037457	NonProperStrand	1	chr15	81037841	81037931	SINE	B3	B2	chr15B381037799	ProperStrand	1	1	-inf
chr17	39848681	39848804	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr6	9010306	9010332	protein_coding	Nxph1	intron	ENSMUSG00000046178	NonProperStrand	10	1	-4.9823
chr11	46106873	46106949	protein_coding	Cyfip2	intron	ENSMUSG00000020340	NonProperStrand	77	chr13	109843156	109843222	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-7.4823
chr17	33952551	33955080	protein_coding	Kank3	intron	ENSMUSG00000042099	NonProperStrand	107	chr7	127538009	127538108	protein_coding	Abca15	utr3	ENSMUSG00000054746	ProperStrand	118	1	-9.5031
chr8	10604844	10604861	protein_coding	Myo16	utr3	ENSMUSG00000039057	ProperStrand	6	chr12	79457373	79457461	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-11.6583
chr16	31956419	31957028	protein_coding-noncoding	Ncbp2	utr5	ENSMUSG00000022774	ProperStrand	5	chr16	31956330	31956420	protein_coding	Ncbp2	intron	ENSMUSG00000022774	ProperStrand	14	5	-inf
chr6	117918062	117918165	LINE	Lx2	L1	chr6Lx2117917912	NonProperStrand	2	chr9	123462076	123462130	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr14	113210663	113210753	LINE	Lx9	L1	chr14Lx9113210563	ProperStrand	1	chr14	113210970	113211070	LTR	ORR1C2	MaLR	chr14ORR1C2113210944	ProperStrand	1	1	-inf
chr2	174334552	174334642	LTR	MLT1C	MaLR	chr2MLT1C174334517	ProperStrand	5	chr2	174334670	174334770	SINE	ID_B1	B4	chr2ID_B1174334644	ProperStrand	5	5	-inf
chr16	96183337	96183417	LTR	RMER16	ERVK	chr16RMER1696183035	NonProperStrand	3	chr2	102829371	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-16.2498
chr14	46779761	46780209	LINE	Lx4A	L1	chr14Lx4A46779620	NonProperStrand	7	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-14.2557
chr12	36124007	36130066	LINE	L1Md_F2	L1	chr12L1Md_F236125968	NonProperStrand	3	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr19	45429123	45429165	LINE	L1MD	L1	chr19L1MD45429130	ProperStrand	1	chr19	45429519	45429566	SINE	B4	B4	chr19B445429416	ProperStrand	1	1	-inf
chr12	99378500	99378565	LTR	RLTR13D6	ERVK	chr12RLTR13D699377925	ProperStrand	9	chr1	63589535	63589611	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-11.9411
chr12	99280359	99280509	LINE	L1Md_T	L1	chr12L1Md_T99280051	NonProperStrand	7	chr1	89545236	89545254	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	18	2	-inf
chr11	72745948	72745987	LINE	L1Md_F2	L1	chr11L1Md_F272745747	ProperStrand	1	chr6	83929841	83929935	protein_coding	Zfml	intron	ENSMUSG00000030016	ProperStrand	53	1	-inf
chr3	31205956	31206056	lincRNA	Gm15496	intron	ENSMUSG00000085953	ProperStrand	11	chr17	3117322	3117412	protein_coding	Scaf8	intron	ENSMUSG00000046201	ProperStrand	73	1	-15.1054
chr3	108554369	108554443	protein_coding	Aknad1	intron	ENSMUSG00000049565	NonProperStrand	220	chr12	105031209	105031271	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	1	-6.6177
chr15	58765858	58765950	protein_coding	Ndufb9	intron	ENSMUSG00000022354	NonProperStrand	1	chr15	58764924	58764975	protein_coding	Tatdn1	intron	ENSMUSG00000050891	ProperStrand	4	1	-inf
chr10	25279908	25279993	LTR	RLTR31_Mm	ERVK	chr10RLTR31_Mm25279387	NonProperStrand	2	chr17	83384841	83384916	LTR	MTC-int	MaLR	chr17MTC-int83384596	NonProperStrand	4	1	-22.1285
chr5	146261267	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr3	51263571	51263636	protein_coding	Naa15	intron	ENSMUSG00000063273	NonProperStrand	11	1	-11.3338
chr10	17124520	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr4	85271782	85271901	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	1	-8.4705
chr17	39846043	39846135	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	88949980	88950037	protein_coding	Gm525	utr3	ENSMUSG00000072553	NonProperStrand	10	1	-5.3115
chr7	12930799	12930862	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr6	125192817	125192864	protein_coding-noncoding	Vamp1	utr5	ENSMUSG00000030337	ProperStrand	18	1	-13.8920
chr17	39847182	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	22227648	22286896	lincRNA	6030443J06Rik	intron	ENSMUSG00000087558	NonProperStrand	7	1	-3.6430
chr5	88646511	88646601	LINE	Lx4A	L1	chr5Lx4A88646143	NonProperStrand	1	chr17	13851853	13851953	protein_coding	Tcte2	intron	ENSMUSG00000038347	ProperStrand	59	1	-inf
chr17	74315234	74315307	LTR	MERVL-int	ERVL	chr17MERVL-int74314786	ProperStrand	1	chr18	24741894	24741963	protein_coding	Slc39a6	intron	ENSMUSG00000024270	NonProperStrand	14	1	-inf
chr9	64177352	64177410	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr10	120384725	120384767	protein_coding	Lemd3	intron	ENSMUSG00000048661	ProperStrand	10	1	-12.6075
chr15	101553074	101553090	LTR	MLT1D	MaLR	chr15MLT1D101552991	NonProperStrand	1	chr17	39847552	39847604	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	75116859	75116949	LINE	Lx6	L1	chrXLx675116817	ProperStrand	1	chrX	75116422	75116522	LTR	ORR1A4	MaLR	chrXORR1A475116445	ProperStrand	1	1	-inf
chr7	110348990	110351630	LINE	L1_Mus1	L1	chr7L1_Mus1110351377	ProperStrand	1	chr11	54450070	54450103	protein_coding-noncoding	Rapgef6	utr5	ENSMUSG00000037533	ProperStrand	2	1	-inf
chr1	33386722	33386757	LINE	Lx7	L1	chr1Lx733386603	NonProperStrand	1	chr1	11818900	11818980	protein_coding	A830018L16Rik	intron	ENSMUSG00000057715	ProperStrand	31	1	-inf
chr17	35837365	35837408	protein_coding	Ddr1	utr5	ENSMUSG00000003534	ProperStrand	232	chr3	35859395	35859503	protein_coding	Mccc1	intron	ENSMUSG00000027709	NonProperStrand	3	1	-15.6812
chr1	127381971	127382058	LTR	RLTR10-int	ERVK	chr1RLTR10-int127381392	ProperStrand	1	chr3	81155791	81155846	LTR	RMER17B	ERVK	chr3RMER17B81155739	ProperStrand	1	1	-inf
chr3	9541084	9541176	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	chr2	41344451	41344468	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-5.8078
chr11	4845259	4845318	protein_coding	Nefh	exon	ENSMUSG00000020396	ProperStrand	3	chr18	84983926	84983961	protein_coding	Gm17266	intron	ENSMUSG00000092153	NonProperStrand	19	1	-19.2235
chr8	73149829	73149891	SINE	B1_Mus1	Alu	chr8B1_Mus173149811	ProperStrand	1	chr4	86856325	86856783	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	1	-inf
chr17	39847277	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	20697409	20697502	SINE	B3	B2	chr9B320697368	ProperStrand	1	1	-inf
chr6	75258469	75258569	LINE	L1Md_F2	L1	chr6L1Md_F275257779	ProperStrand	1	chr6	75258774	75258864	LINE	L1Md_F2	L1	chr6L1Md_F275258733	NonProperStrand	1	1	-inf
chr8	73341219	73341301	protein_coding	Il12rb1	intron	ENSMUSG00000000791	NonProperStrand	44	chr19	16272873	16272942	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	1	-10.4324
chr17	39847802	39847848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	21694985	21695086	SINE	B2_Mm1a	B2	chr9B2_Mm1a21694979	NonProperStrand	2	1	-5.4040
chrX	38599214	38599301	LTR	RMER6A	ERVK	chrXRMER6A38598719	NonProperStrand	1	chr9	123462128	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr18	61707276	61707376	LTR	RMER17C	ERVK	chr18RMER17C61707168	NonProperStrand	4	chr18	61707369	61707459	Low_complexity	GA-rich	Low_complexity	chr18GA-rich61707373	NonProperStrand	4	4	-inf
chr16	38556223	38556270	LTR	MuRRS4-int	ERV1	chr16MuRRS4-int38554677	ProperStrand	1	chr9	123461954	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	5379241	5543591	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr13	97190550	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	15	-9.6480
chr17	39847691	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	3254507	3254524	sense_intronic	Gm11948	.	ENSMUSG00000087055	ProperStrand	4	1	-3.7035
chr2	22744847	22744890	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	97690417	97690491	protein_coding	Lasp1	intron	ENSMUSG00000038366	NonProperStrand	64	1	-6.6804
chr19	3749217	3749317	LINE	L1M4c	L1	chr19L1M4c3749240	NonProperStrand	1	chr19	3749079	3749169	SINE	B2_Mm1t	B2	chr19B2_Mm1t3749048	NonProperStrand	1	1	-inf
chr11	6619803	6619941	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	26	chr9	123461969	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.5840
chr11	109011648	109011693	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	30486739	30486940	protein_coding	Catsperg2	intron	ENSMUSG00000049123	NonProperStrand	27	1	-7.6923
chr11	95981402	95981477	SINE	ID_B1	B4	chr11ID_B195981385	ProperStrand	1	chr19	3624905	3624991	protein_coding	Lrp5	intron	ENSMUSG00000024913	ProperStrand	159	1	-inf
chr7	19548205	19548285	lincRNA	Gm17370	exon	ENSMUSG00000092034	ProperStrand	10	chr7	19545049	19545072	protein_coding	Nova2	utr3	ENSMUSG00000030411	NonProperStrand	37	1	-16.6896
chr17	39847091	39847351	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	118674948	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	68	-6.5810
chr13	53180195	53180219	LTR	RMER19B	ERVK	chr13RMER19B53179846	ProperStrand	1	chr17	39847866	39847888	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39848505	39848633	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	58083752	58083770	LINE	L1_Mus3	L1	chr2L1_Mus358081863	ProperStrand	8	1	-5.4397
chr4	56817100	56817293	protein_coding-noncoding	BC026590	utr5	ENSMUSG00000038827	NonProperStrand	6	chr4	56816997	56817125	protein_coding	BC026590	intron	ENSMUSG00000038827	NonProperStrand	9	4	-inf
chr17	39847047	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	6047705	6047722	protein_coding	Shroom4	intron	ENSMUSG00000068270	NonProperStrand	3	1	-4.3017
chr16	60966519	60966619	LINE	Lx2B	L1	chr16Lx2B60966486	ProperStrand	1	chr16	60966373	60966463	LINE	Lx6	L1	chr16Lx660966365	ProperStrand	1	1	-inf
chr12	51886764	51886804	LINE	L1Md_Gf	L1	chr12L1Md_Gf51885602	ProperStrand	12	chr14	11578803	11578901	antisense	Gm16542	.	ENSMUSG00000089833	ProperStrand	103	1	-14.2230
chr9	63647239	63647339	LTR	RLTR24	ERV1	chr9RLTR2463647245	ProperStrand	3	chr9	63647139	63647230	LTR	RMER20B	ERVK	chr9RMER20B63646712	NonProperStrand	3	3	-inf
chrX	157441252	157441303	LTR	MLT2B2	ERVL	chrXMLT2B2157441212	NonProperStrand	1	chr2	93946667	93946684	protein_coding	Hsd17b12	intron	ENSMUSG00000027195	NonProperStrand	2	1	-inf
chr15	53249957	53250009	SINE	ID_B1	B4	chr15ID_B153249937	ProperStrand	1	chr11	113781529	113781591	protein_coding	Sdk2	intron	ENSMUSG00000041592	ProperStrand	144	1	-inf
chr7	89266417	89266487	LINE	L1MA5	L1	chr7L1MA589266416	NonProperStrand	1	chr8	69096253	69101397	LINE	L1Md_F2	L1	chr8L1Md_F269100786	NonProperStrand	3	1	-inf
chr6	13894653	13894703	lincRNA	1110019D14Rik	intron	ENSMUSG00000084931	ProperStrand	28	chr7	135036315	135036393	protein_coding	Vkorc1	intron	ENSMUSG00000030804	NonProperStrand	22	1	-15.6182
chr11	90590610	90590654	LTR	RLTR18B	ERVK	chr11RLTR18B90590512	ProperStrand	1	chr17	39847041	39847154	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	137098999	137099099	SINE	PB1D10	Alu	chr1PB1D10137099022	NonProperStrand	1	chr1	137099201	137099291	SINE	RSINE1	B4	chr1RSINE1137099130	NonProperStrand	1	1	-inf
chr2	137068142	137068231	Simple_repeat	(TCTA)n	Simple_repeat	chr2(TCTA)n137068131	ProperStrand	1	chr9	123462000	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	108106426	108106510	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.5990
chr17	39847341	39847732	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	mmu-miR-6240	1	23	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	4	-3.4516
chr10	75640494	75640520	protein_coding	Slc5a4a	intron	ENSMUSG00000020229	NonProperStrand	35	chr17	45567191	45567207	protein_coding	Cdc5l	intron	ENSMUSG00000023932	NonProperStrand	10	1	-16.7989
chr17	26003913	26003937	protein_coding	Fam195a	intron	ENSMUSG00000025732	ProperStrand	1	chr17	25998179	25998302	protein_coding	Wdr90	exon	ENSMUSG00000073434	ProperStrand	7	1	-inf
chr5	147478117	147478164	SINE	B2_Mm2	B2	chr5B2_Mm2147477981	ProperStrand	1	chr5	147478218	147478272	Simple_repeat	(TTAGGG)n	Simple_repeat	chr5(TTAGGG)n147478190	ProperStrand	2	1	-inf
chr3	95033810	95033879	protein_coding	Cdc42se1	intron	ENSMUSG00000046722	NonProperStrand	26	chr17	33843684	33843714	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-14.9296
chr4	43492969	43493059	SINE	B3	B2	chr4B343492960	NonProperStrand	660	chr11	87460777	87460820	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	2	-6.4936
chr7	102032051	102032069	LINE	L1MC3	L1	chr7L1MC3102031882	ProperStrand	1	chr9	91525057	91525078	LINE	Lx2B	L1	chr9Lx2B91525043	ProperStrand	1	1	-inf
chr19	32843180	32843248	protein_coding	Pten	intron	ENSMUSG00000013663	ProperStrand	3	chr9	123462015	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr6	3201499	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	80005676	80005763	protein_coding	Rexo1	exon	ENSMUSG00000047417	NonProperStrand	35	1	-3.8833
chr10	78401930	78402638	LINE	Lx3_Mus	L1	chr10Lx3_Mus78401747	NonProperStrand	3	chr17	39846842	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chrX	87238364	87238396	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr3	37481454	37481655	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	1	-11.5137
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr1	178993343	179064561	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	2	-10.6770
chr12	83734487	83734551	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	72	chr5	115489528	115489602	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-8.7895
chr17	46780426	46781787	protein_coding	Klc4	intron	ENSMUSG00000003546	ProperStrand	42	chr1	189126289	189126308	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-13.7218
chr2	90395137	90395167	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr9	115171969	115172034	protein_coding	Stt3b	intron	ENSMUSG00000032437	NonProperStrand	44	1	-10.3459
chr2	69691313	69693888	LTR	ORR1A2	MaLR	chr2ORR1A269691229	NonProperStrand	1	chr2	69693888	69693944	Other	RMER1C	Other	chr2RMER1C69693552	NonProperStrand	1	1	-inf
chr16	26295214	26295232	LINE	Lx8	L1	chr16Lx826294580	ProperStrand	2	chr11	120348754	120348771	lincRNA	Gm16755	intron	ENSMUSG00000086218	ProperStrand	60	1	-19.2365
chr4	132528484	132528584	LINE	HAL1-3A_ME	L1	chr4HAL1-3A_ME132528445	ProperStrand	1	chr6	71814025	71814115	protein_coding	Immt	intron	ENSMUSG00000052337	ProperStrand	7	1	-inf
chr17	39847434	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	107476216	107476287	SINE	B2_Mm2	B2	chr9B2_Mm2107476190	ProperStrand	1	1	-inf
chr6	97610423	97610464	LINE	L1Md_F3	L1	chr6L1Md_F397610247	NonProperStrand	1	chr17	39846962	39847008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	83262813	83262942	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	chr17	66119070	66119088	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-9.4261
chr6	3200785	3200885	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	5	chr15	81732119	81732209	protein_coding	Aco2	intron	ENSMUSG00000022477	ProperStrand	6	1	-inf
chrX	151931754	151931844	LINE	L1_Mus1	L1	chrXL1_Mus1151930999	NonProperStrand	1	chrX	151932601	151932701	LTR	IAPLTR2_Mm	ERVK	chrXIAPLTR2_Mm151932572	ProperStrand	3	1	-inf
chr10	83154428	83154485	SINE	B2_Mm2	B2	chr10B2_Mm283154319	ProperStrand	1	chr5	107828859	107828906	SINE	B2_Mm2	B2	chr5B2_Mm2107828810	NonProperStrand	1	1	-inf
chr8	38489368	38489458	LINE	Lx8	L1	chr8Lx838488865	NonProperStrand	1	chr8	38489538	38489638	SINE	B3	B2	chr8B338489544	NonProperStrand	1	1	-inf
chr16	96042011	96042111	LTR	ORR1A4	MaLR	chr16ORR1A496041958	NonProperStrand	1	chr16	96042133	96042223	SINE	B1_Mus1	Alu	chr16B1_Mus196042097	NonProperStrand	1	1	-inf
chr2	119705534	119705634	SINE	B1_Mur1	Alu	chr2B1_Mur1119705533	ProperStrand	1	chr2	119705446	119705536	SINE	B1_Mus2	Alu	chr2B1_Mus2119705461	ProperStrand	1	1	-inf
chrX	52472484	52472547	LTR	IAPEY3-int	ERVK	chrXIAPEY3-int52472142	ProperStrand	5	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr17	46684305	46684360	protein_coding	Srf	utr3	ENSMUSG00000015605	ProperStrand	13	chr9	123461847	123461912	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr17	39848162	39848250	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	33964616	33964654	LTR	MTE2b	MaLR	chr6MTE2b33964571	ProperStrand	1	1	-inf
chr12	99645570	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr11	101442425	101442451	protein_coding	Nbr1	utr3	ENSMUSG00000017119	ProperStrand	27	1	-13.7085
chr12	85970246	85970346	SINE	B1_Mus2	Alu	chr12B1_Mus285970226	ProperStrand	2	chr12	85970047	85970137	SINE	B2_Mm2	B2	chr12B2_Mm285969994	ProperStrand	2	2	-inf
chr10	128733327	128733608	SINE	B1_Mm	Alu	chr10B1_Mm128733242	NonProperStrand	2	chr15	76460978	76461003	protein_coding	Tonsl	exon	ENSMUSG00000059323	ProperStrand	40	1	-20.0320
chr2	128123624	128123640	lincRNA	Gm14005	intron	ENSMUSG00000074813	NonProperStrand	116	chr7	35701656	35701735	protein_coding	Pepd	intron	ENSMUSG00000063931	NonProperStrand	73	1	-10.3041
chr2	5379249	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr7	30654190	30654290	protein_coding	Zfp420	intron	ENSMUSG00000058402	NonProperStrand	19	1	-6.8156
chr15	99603003	99603021	antisense	Gm17058	.	ENSMUSG00000090406	NonProperStrand	10	chr13	97190599	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.7312
chr17	39848652	39848711	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr16	10247146	10247198	LTR	MER54A	ERVL	chr16MER54A10246732	ProperStrand	1	1	-inf
chr16	56140588	56140629	protein_coding	Senp7	intron	ENSMUSG00000052917	ProperStrand	21	chrX	152671184	152671235	protein_coding	Gm15155	intron	ENSMUSG00000055109	NonProperStrand	93	1	-13.2706
chr4	146911539	146911592	LTR	RLTR13D3	ERVK	chr4RLTR13D3146910610	ProperStrand	3	chr2	154869348	154869438	protein_coding	a	intron	ENSMUSG00000027596	NonProperStrand	26	1	-inf
chr10	23785410	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr10	62812997	62813076	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	1	-7.3893
chr19	46380274	46380934	protein_coding	Nfkb2	utr5	ENSMUSG00000025225	NonProperStrand	3	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr17	39847441	39847725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	59076318	59076335	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	3	-3.1878
chr1	108660406	108660496	LINE	L1MB4	L1	chr1L1MB4108660403	ProperStrand	1	chr1	108660619	108660719	protein_coding	Vps4b	utr3	ENSMUSG00000009907	NonProperStrand	1	1	-inf
mmu-miR-92a-3p	0	21	miRNA	mmu-miR-92a-3p	.	mmu-miR-92a-3p	ProperStrand	1	chr19	6059186	6059459	protein_coding	Fau	exon	ENSMUSG00000038274	ProperStrand	58	1	-inf
chr17	56800295	56800350	protein_coding	Tmem146	intron	ENSMUSG00000040828	NonProperStrand	78	chr12	102704888	102704933	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-7.2416
chr2	90864867	90864967	DNA	URR1A	MER1_type	chr2URR1A90864771	ProperStrand	1	chr2	90865072	90865162	SINE	B1_Mm	Alu	chr2B1_Mm90865037	NonProperStrand	1	1	-inf
chr3	126965110	126965126	protein_coding	Ank2	intron	ENSMUSG00000032826	ProperStrand	19	chr13	35783459	35783536	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-10.8261
chr12	101038285	101038370	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	ProperStrand	245	chr11	115534854	115534924	protein_coding	Grb2	intron	ENSMUSG00000059923	ProperStrand	75	1	-8.7559
chr13	21718018	21718114	LINE	Lx7	L1	chr13Lx721717482	ProperStrand	15	chr5	146261079	146261098	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-7.8289
chr9	97092508	97092619	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n97092421	NonProperStrand	7	chr14	123095420	123095438	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	10	1	-20.7396
chr2	133981159	133981180	LINE	L1_Mur3	L1	chr2L1_Mur3133980743	NonProperStrand	4	chr17	28328598	28328883	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	108	1	-16.5308
chr17	39847092	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	92512321	92512414	protein_coding	Clic6	intron	ENSMUSG00000022949	NonProperStrand	2	1	-6.5615
chr17	39846812	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	100141286	100141382	protein_coding	Mettl7a1	intron	ENSMUSG00000054619	ProperStrand	2	1	-5.3533
chr8	4311704	4311769	protein_coding	Elavl1	exon	ENSMUSG00000040028	ProperStrand	23	chr16	94200963	94201054	protein_coding	Sim2	intron	ENSMUSG00000062713	NonProperStrand	112	1	-12.7118
chr4	144953323	144953377	LINE	L1_Mus1	L1	chr4L1_Mus1144952313	ProperStrand	1	chr16	30067452	30067479	protein_coding	Hes1	exon	ENSMUSG00000022528	ProperStrand	4	1	-inf
chr3	6565124	6565224	LINE	L1Md_F	L1	chr3L1Md_F6560520	ProperStrand	1	chr3	6565344	6565434	LINE	L1VL2	L1	chr3L1VL26565238	ProperStrand	1	1	-inf
chr4	132309940	132310033	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr10	80773991	80774034	protein_coding	Pip5k1c	intron	ENSMUSG00000034902	ProperStrand	107	1	-8.5627
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr11	20727731	20727846	protein_coding	1110067D22Rik	intron	ENSMUSG00000042363	ProperStrand	10	1	-10.2130
chr2	30201000	30201063	protein_coding	Sh3glb2	intron	ENSMUSG00000026860	ProperStrand	6	chr2	30196624	30196709	protein_coding	Nup188	intron	ENSMUSG00000052533	NonProperStrand	14	1	-19.6103
chr8	33914623	33914645	LINE	L1Md_F2	L1	chr8L1Md_F233914338	NonProperStrand	7	chr8	33909776	33909818	LINE	Lx8	L1	chr8Lx833909135	NonProperStrand	14	1	-19.2520
chr9	123141084	123141145	SINE	B3	B2	chr9B3123141061	ProperStrand	1	chr7	119769796	119769887	lincRNA	2310014F06Rik	intron	ENSMUSG00000085945	ProperStrand	10	1	-inf
chr3	86114251	86114285	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	chr5	128803932	128837742	protein_coding	Tmem132d	intron	ENSMUSG00000034310	ProperStrand	110	1	-9.1348
chr5	74346449	74346511	DNA	FordPrefect	Tip100	chr5FordPrefect74346133	NonProperStrand	1	chr5	74348529	74348578	LTR	MLT1F2	MaLR	chr5MLT1F274348184	NonProperStrand	4	1	-inf
chr3	98113034	98113134	protein_coding	Hmgcs2	utr3	ENSMUSG00000027875	NonProperStrand	2	chr3	98133520	98133610	protein_coding	Phgdh	intron	ENSMUSG00000053398	NonProperStrand	7	1	-21.1088
chr6	56878130	56878172	LTR	ORR1D1	MaLR	chr6ORR1D156878088	ProperStrand	3	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr7	7209724	7209820	LINE	L1Md_F2	L1	chr7L1Md_F27208346	NonProperStrand	1	chr2	5379286	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr1	113933436	113933521	LINE	L1_Mur1	L1	chr1L1_Mur1113932353	NonProperStrand	2	chr1	113936105	113936180	LTR	MTB-int	MaLR	chr1MTB-int113935410	ProperStrand	1	1	-inf
chr6	3201508	3201539	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	5731593	5731694	protein_coding	Sssca1	exon	ENSMUSG00000079478	ProperStrand	2	2	-inf
chr16	57396390	57396418	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr17	51080454	51080546	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	ProperStrand	43	1	-9.1847
chr19	4279666	4279766	protein_coding-noncoding	Ankrd13d	utr3	ENSMUSG00000005986	NonProperStrand	1	chr19	4279396	4279486	protein_coding	Ankrd13d	intron	ENSMUSG00000005986	NonProperStrand	1	1	-inf
chr3	88297965	88298064	protein_coding	Lmna	intron	ENSMUSG00000028063	ProperStrand	5	chr9	20870873	20870934	protein_coding	Zglp1	intron	ENSMUSG00000079681	ProperStrand	2	1	-23.2669
chr16	36751880	36751896	protein_coding	Slc15a2	exon	ENSMUSG00000022899	NonProperStrand	15	chr9	123462081	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr17	39847630	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	83693421	83693437	protein_coding	Atp6v1b1	intron	ENSMUSG00000006269	ProperStrand	2	1	-5.4040
chr5	130148572	130148662	LTR	MTC-int	MaLR	chr5MTC-int130148484	NonProperStrand	1	chr5	130148757	130148857	LTR	MTC	MaLR	chr5MTC130148714	NonProperStrand	1	1	-inf
chr6	39377573	39377633	SINE	ID_B1	B4	chr6ID_B139377584	NonProperStrand	1	chr6	8596118	8596135	protein_coding	Ica1	intron	ENSMUSG00000062995	ProperStrand	18	1	-inf
chr15	90228536	90228621	LTR	RLTR19B	ERVK	chr15RLTR19B90228366	ProperStrand	1	chr8	78080530	78080586	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-inf
chr10	17723275	17723291	LTR	RLTR25A	ERVK	chr10RLTR25A17722785	ProperStrand	3	chr17	70963683	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-12.5468
chr9	123461992	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	6788853	6788934	protein_coding	Rab18	utr3	ENSMUSG00000073639	ProperStrand	14	1	-3.7266
chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr10	61377963	61378097	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	2	-12.5602
chr18	16808860	16808878	protein_coding	Cdh2	exon	ENSMUSG00000024304	ProperStrand	5	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-13.7932
chr17	39846729	39846758	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	55296446	55296569	protein_coding	Gucy2g	intron	ENSMUSG00000055523	NonProperStrand	1	1	-inf
chr17	39848505	39848573	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	116132055	116132422	protein_coding	Srp68	intron	ENSMUSG00000020780	ProperStrand	6	1	-6.0469
chr17	39843828	39843896	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	29374335	29374510	protein_coding	Ccdc88a	intron	ENSMUSG00000032740	ProperStrand	17	1	-5.3771
chr8	33854084	33854135	LINE	L1Md_A	L1	chr8L1Md_A33850474	ProperStrand	25	chr6	112889161	112889202	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	95	1	-12.8718
chr4	34853871	34853940	lincRNA	2410114N07Rik	exon	ENSMUSG00000085824	ProperStrand	16	chr4	34852539	34852618	protein_coding	Cga	intron	ENSMUSG00000028298	NonProperStrand	13	1	-18.0642
chr14	19751404	19751511	LINE	L1_Mus1	L1	chr14L1_Mus119749429	ProperStrand	53	chr14	24493713	24493733	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-10.7508
chr2	5379294	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-4.4855
chr14	19926678	19926778	LINE	L1_Mus4	L1	chr14L1_Mus419924177	ProperStrand	3	chr14	19926725	19926815	LINE	L1_Mus4	L1	chr14L1_Mus419926683	ProperStrand	1	1	-inf
chr9	123461882	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	83661248	83661453	protein_coding	Fam171b	intron	ENSMUSG00000048388	ProperStrand	15	1	-3.5950
chr12	41386504	41386529	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	chr8	72463157	72463260	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	1	-6.7263
chr17	39846588	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	50549457	50549474	LTR	RMER5	ERV1	chr7RMER550549180	NonProperStrand	1	1	-inf
chrX	100673116	100673183	antisense	Tsix	.	ENSMUSG00000085715	ProperStrand	8	chr2	71350313	71350370	protein_coding	Metap1d	intron	ENSMUSG00000041921	ProperStrand	13	1	-20.3570
chr13	73999738	73999838	LTR	MTB	MaLR	chr13MTB73999487	ProperStrand	1	chr13	74000041	74000131	LTR	ORR1E	MaLR	chr13ORR1E74000042	NonProperStrand	1	1	-inf
chr14	121796208	121796308	SINE	B2_Mm1t	B2	chr14B2_Mm1t121796181	ProperStrand	5	chr14	121796373	121796463	SINE	B3	B2	chr14B3121796380	ProperStrand	2	2	-inf
chr19	23152172	23152203	LINE	L1Md_F2	L1	chr19L1Md_F223152082	ProperStrand	1	chr19	23149541	23149582	lincRNA	C330002G04Rik	intron	ENSMUSG00000087169	NonProperStrand	149	1	-inf
chr13	106381741	106381819	LINE	L1VL1	L1	chr13L1VL1106378093	ProperStrand	2	chr6	93926686	93926733	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-13.7207
chr2	52129045	52129117	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	chr9	15326384	15326454	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-10.5038
chrX	150528564	150528616	LTR	MMERVK10C-int	ERVK	chrXMMERVK10C-int150528263	ProperStrand	1	chr10	18426916	18426978	protein_coding	D10Bwg1379e	intron	ENSMUSG00000019852	NonProperStrand	72	1	-inf
chr13	29456046	29456119	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr10	59919569	59919639	protein_coding	Cdh23	intron	ENSMUSG00000012819	NonProperStrand	234	3	-12.2955
chr3	8554822	8554873	protein_coding	Stmn2	exon	ENSMUSG00000027500	ProperStrand	66	chr17	24694408	24695287	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	65	1	-11.6698
chr17	39847440	39847492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	22059955	22060047	protein_coding	Gm6040	intron	ENSMUSG00000071165	ProperStrand	2	1	-5.4040
chr11	116470048	116470094	protein_coding	Rhbdf2	intron	ENSMUSG00000020806	ProperStrand	55	chr10	63308396	63311468	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-9.9176
chr7	65869936	65869967	LTR	MTB-int	MaLR	chr7MTB-int65868910	ProperStrand	1	chr9	123462081	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	135958412	135958473	LINE	L1MB8	L1	chrXL1MB8135958390	NonProperStrand	2	chrX	135944347	135944398	LINE	Lx9	L1	chrXLx9135944071	NonProperStrand	2	2	-inf
chr17	63268110	63268171	SINE	B3A	B2	chr17B3A63268088	NonProperStrand	1	chr11	88512022	88512093	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-inf
chr7	110142582	110142634	LINE	Lx3A	L1	chr7Lx3A110141139	ProperStrand	1	chr17	39846427	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	1	-inf
chr8	107502955	107503045	LTR	ERVL-int	ERVL	chr8ERVL-int107502925	ProperStrand	1	chr8	107503039	107503139	SINE	B3	B2	chr8B3107503064	NonProperStrand	1	1	-inf
chr13	84285656	84285746	LINE	Lx	L1	chr13Lx84283337	ProperStrand	3	chr13	84285741	84285841	Simple_repeat	(GAA)n	Simple_repeat	chr13(GAA)n84285749	ProperStrand	3	3	-inf
chr12	78350926	78350998	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr19	45945935	45946011	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	1	-4.1417
chr2	154420447	154420504	protein_coding	Pxmp4	intron	ENSMUSG00000000876	ProperStrand	10	chr12	13528365	13528461	protein_coding	Nbas	intron	ENSMUSG00000020576	ProperStrand	45	1	-16.2743
chr11	108210188	108210208	protein_coding	Apoh	intron	ENSMUSG00000000049	ProperStrand	3	chr5	115563335	115563420	protein_coding	Acads	intron	ENSMUSG00000029545	NonProperStrand	165	1	-16.3644
chr12	87311849	87311899	lincRNA	Gm17691	intron	ENSMUSG00000091798	ProperStrand	21	chr10	80573138	80573178	protein_coding	Map2k2	intron	ENSMUSG00000035027	NonProperStrand	31	1	-15.4925
chr11	6395600	6395622	LTR	RMER17C	ERVK	chr11RMER17C6395538	NonProperStrand	1	chr11	103000311	103017060	protein_coding	Hexim2	exon	ENSMUSG00000043372	NonProperStrand	23	1	-inf
chr19	13150411	13150511	LINE	Lx9	L1	chr19Lx913150385	ProperStrand	1	chr19	13150540	13150630	LTR	ORR1A0	MaLR	chr19ORR1A013150526	ProperStrand	1	1	-inf
chr17	39848716	39848813	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	150064160	150064189	SINE	B4	B4	chr4B4150064158	NonProperStrand	1	1	-inf
chr6	125106441	125106505	protein_coding	Iffo1	intron	ENSMUSG00000038271	ProperStrand	44	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-12.5828
chr6	136327615	136328522	LTR	MTB_Mm-int	MaLR	chr6MTB_Mm-int136327549	ProperStrand	1	chr14	23954827	23954877	SINE	B4	B4	chr14B423954691	NonProperStrand	1	1	-inf
chr9	105067190	105067278	protein_coding	Nek11	intron	ENSMUSG00000035032	NonProperStrand	22	chr11	73083074	73083097	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-15.2187
chr4	86985246	86985262	SINE	B3	B2	chr4B386985233	ProperStrand	10	chr17	29677320	29677455	protein_coding	Tmem217	intron	ENSMUSG00000079580	NonProperStrand	32	1	-16.9081
chr7	135630214	135630304	LTR	MurERV4_19-int	ERVK	chr7MurERV4_19-int135629701	ProperStrand	1	chr7	135630386	135630486	LTR	MurERV4_19-int	ERVK	chr7MurERV4_19-int135630315	ProperStrand	3	1	-inf
chr11	3657019	3657090	protein_coding	Osbp2	intron	ENSMUSG00000020435	NonProperStrand	65	chr1	181896516	181896580	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-7.8733
chr14	101565503	101565593	LINE	L1_Mm	L1	chr14L1_Mm101564789	NonProperStrand	1	chr14	101565636	101565737	LINE	L1_Mus1	L1	chr14L1_Mus1101565599	ProperStrand	1	1	-inf
chr17	39848165	39848252	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	89896546	89896563	protein_coding	Tmem100	intron	ENSMUSG00000069763	NonProperStrand	1	1	-inf
chr8	64818056	64818081	LINE	Lx6	L1	chr8Lx664815263	ProperStrand	3	chr17	39847677	39847712	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr14	70312932	70313023	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	65	chr4	33356159	33356175	protein_coding	Pnrc1	intron	ENSMUSG00000040128	ProperStrand	2	1	-19.8563
chr11	19415819	19415909	LTR	MT2_Mm	ERVL	chr11MT2_Mm19415837	NonProperStrand	1	chr12	73551525	73551625	protein_coding	Lrrc9	intron	ENSMUSG00000021090	NonProperStrand	7	1	-inf
chr10	121743781	121743871	LTR	IAPEz-int	ERVK	chr10IAPEz-int121741043	NonProperStrand	8	chr10	121744272	121744372	LTR	IAPEz-int	ERVK	chr10IAPEz-int121744113	NonProperStrand	2	1	-inf
chr17	4082370	4082415	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr9	15315597	15315647	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-6.1148
chr4	135907770	135907870	SINE	B1_Mur4	Alu	chr4B1_Mur4135907769	NonProperStrand	1	chr4	135908009	135908099	SINE	ID_B1	B4	chr4ID_B1135907993	NonProperStrand	1	1	-inf
chr12	99645565	99645661	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-9.8180
chr5	146261171	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	67500550	67500589	lincRNA	B430212C06Rik	intron	ENSMUSG00000046415	ProperStrand	20	1	-7.2424
chr15	21784586	21784686	LINE	L1Md_A	L1	chr15L1Md_A21783715	NonProperStrand	1	chr15	21784693	21784783	LINE	L1_Mm	L1	chr15L1_Mm21784711	NonProperStrand	1	1	-inf
chr14	84004998	84005098	LINE	Lx5	L1	chr14Lx584003623	NonProperStrand	1	chr14	84005290	84005380	Simple_repeat	(TATATG)n	Simple_repeat	chr14(TATATG)n84005299	NonProperStrand	1	1	-inf
chr17	39847272	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	138166689	138166740	SINE	B3A	B2	chr5B3A138166681	ProperStrand	2	1	-6.5615
chr17	39843520	39843538	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	33754926	33755031	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	1	-3.4802
chr2	175166866	175167089	LTR	RLTR25A	ERVK	chr2RLTR25A175166059	ProperStrand	9	chr2	175167075	175167192	LTR	RLTR41	ERV1	chr2RLTR41175167064	ProperStrand	6	6	-inf
chr17	39847222	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	148220101	148220122	SINE	B3	B2	chr3B3148220024	NonProperStrand	1	1	-inf
chr3	96269959	96270001	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr1	193163926	193163952	protein_coding	Tmem206	intron	ENSMUSG00000026627	ProperStrand	7	1	-17.4962
chr4	53860739	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr9	56223571	56223668	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-5.9325
chr17	39845923	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr12	73087993	73088013	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	15	2	-7.5680
chr11	40708725	40708819	LTR	RLTR15	ERVK	chr11RLTR1540708668	ProperStrand	1	chr4	139103776	139103795	protein_coding	Iffo2	intron	ENSMUSG00000041025	ProperStrand	3	1	-inf
chr18	65582476	65582576	LTR	ORR1C2	MaLR	chr18ORR1C265582460	ProperStrand	1	chr18	65582387	65582477	LTR	ORR1E-int	MaLR	chr18ORR1E-int65581952	NonProperStrand	3	1	-inf
chr13	74586502	74586595	Unknown	MurSatRep1	Unknown	chr13MurSatRep174586066	ProperStrand	1	chr8	3418276	3418313	protein_coding	Arhgef18	intron	ENSMUSG00000004568	ProperStrand	170	1	-inf
chr8	15264867	15264967	LTR	RLTR25A	ERVK	chr8RLTR25A15264589	NonProperStrand	1	chr8	16742649	16742739	protein_coding	Csmd1	intron	ENSMUSG00000060924	ProperStrand	35	1	-inf
chr1	192745586	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr16	23110380	23110470	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-10.3589
chr2	121388569	121632413	protein_coding-noncoding	Frmd5	exon	ENSMUSG00000027238	ProperStrand	3	chr2	121388637	121632287	protein_coding	Frmd5	intron	ENSMUSG00000027238	ProperStrand	82	3	-inf
chr11	30197869	30197906	LINE	L1_Mus4	L1	chr11L1_Mus430197330	NonProperStrand	5	chr3	41523573	41523645	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	1	-14.4482
chr4	150388578	150388706	protein_coding	Per3	intron	ENSMUSG00000028957	ProperStrand	2	chr6	126101997	126102015	protein_coding	Ntf3	intron	ENSMUSG00000049107	ProperStrand	2	1	-19.8939
chr17	39847215	39847252	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	30030098	30030125	protein_coding	D2Wsu81e	intron	ENSMUSG00000039660	NonProperStrand	9	1	-3.1539
chr2	22744878	22744906	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	1	-6.9813
chr8	125000125	125000225	protein_coding	Ctu2	utr5	ENSMUSG00000049482	ProperStrand	1	chr8	124999873	124999963	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-inf
chr2	144655950	144656080	LTR	MLT1E3	MaLR	chr2MLT1E3144655720	NonProperStrand	1	chr2	144658217	144658244	Simple_repeat	(TC)n	Simple_repeat	chr2(TC)n144658202	ProperStrand	1	1	-inf
chr1	54614707	54614797	Low_complexity	GA-rich	Low_complexity	chr1GA-rich54614669	NonProperStrand	2	chr1	54614336	54614436	protein_coding	Pgap1	utr5	ENSMUSG00000070889	ProperStrand	9	2	-inf
chr14	66103812	66103879	LTR	ORR1C1	MaLR	chr14ORR1C166103517	NonProperStrand	1	chr17	39848200	39848256	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr5	115098555	115098669	protein_coding	Trpv4	intron	ENSMUSG00000014158	NonProperStrand	78	chr13	89700782	89700808	protein_coding	Hapln1	intron	ENSMUSG00000021613	NonProperStrand	42	1	-12.2144
chr17	39847341	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	132308766	132310759	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	28	-10.5097
chr7	110460797	110460870	LINE	Lx	L1	chr7Lx110460601	NonProperStrand	1	chr2	13078272	13078317	protein_coding	Rsu1	intron	ENSMUSG00000026727	ProperStrand	40	1	-inf
chr13	68210542	68210632	LINE	L1Md_T	L1	chr13L1Md_T68209727	NonProperStrand	1	chr13	68018493	68018593	LTR	RLTR6-int	ERV1	chr13RLTR6-int68015843	NonProperStrand	1	1	-inf
chr17	39842998	39843037	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr19	16346491	16346520	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	1	-3.2983
chr17	39847782	39847800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	64191268	64191487	SINE	B1_Mur4	Alu	chr9B1_Mur464191276	NonProperStrand	1	1	-inf
chrX	151001101	151002253	LINE	Lx3_Mus	L1	chrXLx3_Mus151000280	NonProperStrand	4	chrX	151002254	151003587	LINE	Lx3_Mus	L1	chrXLx3_Mus151001620	NonProperStrand	8	3	-inf
chr1	177777312	177777390	LTR	MERVL-int	ERVL	chr1MERVL-int177773176	NonProperStrand	7	chr4	86478549	86478617	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	2	-inf
chr10	29310902	29311002	LINE	Lx8	L1	chr10Lx829310302	NonProperStrand	1	chr10	29311012	29311102	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n29310989	NonProperStrand	1	1	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr6	92123867	92123930	protein_coding	Mrps25	utr3	ENSMUSG00000014551	NonProperStrand	2	1	-15.3301
chr16	84628082	84628182	LINE	L2	L2	chr16L284628015	NonProperStrand	1	chr16	84628296	84628386	SINE	B4A	B4	chr16B4A84628268	NonProperStrand	1	1	-inf
chr1	168884171	168884261	LTR	MTD	MaLR	chr1MTD168884107	ProperStrand	1	chr1	168884411	168884511	LTR	ORR1E	MaLR	chr1ORR1E168884407	ProperStrand	1	1	-inf
chr18	73670909	73671009	LINE	Lx6	L1	chr18Lx673670881	NonProperStrand	2	chr18	73673909	73673999	LTR	ORR1D2	MaLR	chr18ORR1D273673889	ProperStrand	2	2	-inf
chr14	121190988	121191098	LTR	LTR41B	ERVL	chr14LTR41B121190979	ProperStrand	2	chr14	121191172	121191215	SINE	ID4	ID	chr14ID4121191146	NonProperStrand	2	2	-inf
chr4	32964794	32964884	protein_coding	Ankrd6	intron	ENSMUSG00000040183	NonProperStrand	39	chr5	138297341	138297638	protein_coding	Pilrb1	intron	ENSMUSG00000066684	NonProperStrand	29	1	-14.3632
chr17	39847087	39847175	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	23809839	23809906	Other	RMER1B	Other	chr5RMER1B23809698	ProperStrand	1	1	-inf
chr11	101604936	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	chr7	24888961	24889016	protein_coding	Zfp180	intron	ENSMUSG00000057101	ProperStrand	154	1	-10.5802
chrX	129992605	129992669	LINE	L1Md_F2	L1	chrXL1Md_F2129992181	ProperStrand	1	chr2	32231308	32231349	protein_coding-noncoding	Ciz1	utr5	ENSMUSG00000039205	ProperStrand	39	1	-inf
chr6	64837304	64837394	LINE	L1Md_A	L1	chr6L1Md_A64831304	ProperStrand	1	chr6	64837507	64837607	LINE	L1Md_A	L1	chr6L1Md_A64837328	ProperStrand	1	1	-inf
chr8	72723323	72723384	protein_coding	Slc25a42	intron	ENSMUSG00000002346	NonProperStrand	13	chr9	123461960	123462083	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr9	17987812	17987832	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr3	65528410	65528534	protein_coding	Lekr1	intron	ENSMUSG00000074579	NonProperStrand	2	1	-18.4551
chr9	87049213	87055770	protein_coding	Mrap2	intron	ENSMUSG00000042761	NonProperStrand	1	chr2	120126930	120127052	protein_coding	Pla2g4f	intron	ENSMUSG00000046971	ProperStrand	4	1	-inf
chr5	29284965	29285000	LINE	Lx5	L1	chr5Lx529284767	ProperStrand	1	chr5	29259853	29259875	lincRNA	9530036O11Rik	intron	ENSMUSG00000086663	NonProperStrand	35	1	-inf
chr17	39848163	39848194	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	72196560	72196658	LTR	RMER20A	ERVK	chr1RMER20A72196252	ProperStrand	1	1	-inf
chr7	110436670	110436760	LINE	L1Md_A	L1	chr7L1Md_A110431177	ProperStrand	1	chr7	110437126	110437226	LINE	L1Md_A	L1	chr7L1Md_A110436950	ProperStrand	1	1	-inf
chr16	53211033	53211133	LINE	Lx5	L1	chr16Lx553210020	NonProperStrand	1	chr16	53211239	53211329	LTR	RMER10A	ERVL	chr16RMER10A53211165	ProperStrand	1	1	-inf
chr17	13896189	13899011	protein_coding-noncoding	Mllt4	utr5	ENSMUSG00000068036	ProperStrand	5	chr17	13888944	13896144	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	4	-inf
chr1	165388690	165388733	LINE	L1Md_F3	L1	chr1L1Md_F3165387147	ProperStrand	2	chr9	123461935	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr12	44582815	44582915	LINE	Lx6	L1	chr12Lx644582753	NonProperStrand	1	chr12	44582640	44582730	LINE	Lx8	L1	chr12Lx844582054	ProperStrand	1	1	-inf
chr17	4082361	4082451	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr16	66754807	66754907	protein_coding	Cadm2	intron	ENSMUSG00000064115	ProperStrand	39	3	-21.0073
chr7	130701045	130701157	LINE	L1Md_F3	L1	chr7L1Md_F3130695223	NonProperStrand	21	chr1	131912331	131912364	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-11.0904
chr2	102829373	102829437	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr9	110281291	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-5.4527
chr6	30738067	30738116	protein_coding	Copg2	intron	ENSMUSG00000025607	NonProperStrand	26	chr11	35121499	35121593	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-10.5419
chr17	70963741	70963786	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr17	31348268	31348344	protein_coding	Ubash3a	intron	ENSMUSG00000042345	ProperStrand	3	2	-inf
chr9	40804746	40804796	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr11	48800866	48800932	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-4.7476
chr16	57182675	57182800	protein_coding	Tbc1d23	intron	ENSMUSG00000022749	ProperStrand	21	chr18	9997730	9997746	protein_coding	Usp14	exon	ENSMUSG00000047879	ProperStrand	29	1	-15.6103
chr16	56697471	56697524	protein_coding	Tfg	intron	ENSMUSG00000022757	ProperStrand	19	chr5	20904885	20904951	protein_coding	Ccdc146	intron	ENSMUSG00000064280	ProperStrand	82	1	-13.7287
chr3	112058276	112058294	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n112058245	ProperStrand	1	chr9	123462148	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr18	36428628	36428679	SINE	B1_Mur3	Alu	chr18B1_Mur336428641	NonProperStrand	1	chr18	36450391	36450492	protein_coding	Pura	utr3	ENSMUSG00000043991	NonProperStrand	11	1	-inf
chr8	85029880	85029958	LINE	L1ME3B	L1	chr8L1ME3B85029786	ProperStrand	6	chr3	37041039	37041107	LTR	RLTR20B3	ERVK	chr3RLTR20B337040954	ProperStrand	6	6	-inf
chr1	13343018	13343063	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	chr1	153241969	153242659	protein_coding	1200016B10Rik	intron	ENSMUSG00000052748	ProperStrand	80	1	-9.1869
chr13	40904909	40904977	LINE	L1Md_F2	L1	chr13L1Md_F240904927	ProperStrand	26	chr13	40886942	40886970	SINE	B4A	B4	chr13B4A40886914	NonProperStrand	1	1	-inf
chr4	47474699	47474728	LINE	Lx6	L1	chr4Lx647473017	ProperStrand	1	chr17	39847037	39847054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	29258514	29259410	LTR	RLTR15	ERVK	chr7RLTR1529258410	ProperStrand	6	chr9	123461822	123461873	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-9.1913
chr19	15677477	15677577	DNA	MER2	MER2_type	chr19MER215677476	ProperStrand	1	chr19	15677288	15677378	DNA	MER2B	MER2_type	chr19MER2B15677195	ProperStrand	1	1	-inf
chr17	39847737	39847842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	167685859	167685876	lincRNA	Gm14319	intron	ENSMUSG00000085411	NonProperStrand	3	1	-4.3512
chr14	56727566	56727624	LINE	Lx5	L1	chr14Lx556727101	NonProperStrand	2	chr6	94185485	94185517	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-13.7207
chr9	43100073	43100163	LINE	L1MEf	L1	chr9L1MEf43100086	NonProperStrand	2	chr9	43099940	43100041	SINE	PB1D9	Alu	chr9PB1D943099967	NonProperStrand	2	2	-inf
chr17	38022211	38022277	LINE	Lx5	L1	chr17Lx538022208	NonProperStrand	1	chr5	65262666	65262695	LTR	RLTR31_Mm	ERVK	chr5RLTR31_Mm65262545	ProperStrand	1	1	-inf
chr5	45010274	45010374	protein_coding	Ldb2	intron	ENSMUSG00000039706	NonProperStrand	8	chr6	30014741	30014831	protein_coding	Nrf1	intron	ENSMUSG00000058440	ProperStrand	52	1	-16.4461
chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	29073857	29073957	LTR	MLT1F	MaLR	chr8MLT1F29073775	NonProperStrand	1	1	-inf
chr12	91838278	91838378	LTR	MLT1A0	MaLR	chr12MLT1A091838139	ProperStrand	1	chr12	91838505	91838595	Simple_repeat	(GAA)n	Simple_repeat	chr12(GAA)n91838506	NonProperStrand	1	1	-inf
chr12	16989445	16989539	protein_coding	Rock2	intron	ENSMUSG00000020580	ProperStrand	46	chr11	63783568	63783595	protein_coding	Cox10	intron	ENSMUSG00000042148	ProperStrand	8	1	-16.7211
chr3	123507972	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr6	117931247	117931295	SINE	B3A	B2	chr6B3A117931100	NonProperStrand	1	1	-inf
chr1	36929509	36929570	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	chr3	41509295	41509366	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	2	-10.7629
chr17	71809277	71809377	protein_coding	Smchd1	intron	ENSMUSG00000024054	NonProperStrand	5	chr17	71809176	71809266	pseudogene	Gm4707	.	ENSMUSG00000091831	NonProperStrand	2	1	-23.2669
chr5	146261079	146261107	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	87680070	87682558	protein_coding	Ttc7	utr5	ENSMUSG00000036918	ProperStrand	70	1	-4.7649
chr6	125164681	125164781	SINE	B3	B2	chr6B3125164613	NonProperStrand	3	chr6	125164838	125164928	Simple_repeat	(TA)n	Simple_repeat	chr6(TA)n125164805	NonProperStrand	4	3	-inf
chr17	80424135	80433520	LTR	MTA_Mm-int	MaLR	chr17MTA_Mm-int80423975	NonProperStrand	1	chr17	80433545	80433635	protein_coding	Hnrpll	intron	ENSMUSG00000024095	ProperStrand	32	1	-inf
chr1	125404262	125404350	protein_coding	Dpp10	intron	ENSMUSG00000036815	ProperStrand	52	chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-12.8045
chr17	39843422	39843488	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr18	5660182	5660238	protein_coding	Zeb1	intron	ENSMUSG00000024238	ProperStrand	44	1	-3.1134
chr11	107376203	107376281	lincRNA	C330019F10Rik	intron	ENSMUSG00000085864	ProperStrand	30	chr3	86030833	86030879	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-11.7510
chr12	40520194	40520240	LINE	L1_Mur3	L1	chr12L1_Mur340519980	NonProperStrand	1	chr12	40521536	40521592	LINE	L1_Mur3	L1	chr12L1_Mur340521112	NonProperStrand	1	1	-inf
chr3	130786229	130786329	SINE	B1_Mur3	Alu	chr3B1_Mur3130786190	NonProperStrand	1	chr3	130785833	130785923	SINE	B1_Mus1	Alu	chr3B1_Mus1130785824	ProperStrand	1	1	-inf
chr13	97472982	97473006	SINE	B3A	B2	chr13B3A97472967	ProperStrand	1	chr9	123462112	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	122461932	122465966	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	chr14	52183166	52183991	protein_coding	Gm5622	intron	ENSMUSG00000079244	NonProperStrand	57	1	-10.3546
chr2	157324800	157324854	SINE	B4A	B4	chr2B4A157324724	NonProperStrand	1	chr9	123461882	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	65581424	65591918	LTR	RMER12B	ERVK	chr5RMER12B65581030	ProperStrand	1	chr5	65591915	65594421	protein_coding	Wdr19	intron	ENSMUSG00000037890	ProperStrand	17	1	-inf
chr17	39845584	39845680	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	173132327	173132343	SINE	ID_B1	B4	chr2ID_B1173132292	NonProperStrand	3	1	-8.2800
chr17	39847611	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	67009967	67010034	LTR	RMER10B	ERVL	chr1RMER10B67009722	ProperStrand	1	1	-inf
chr15	83149722	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	chr11	117158269	117158348	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-8.4880
chr3	17772237	17772337	LTR	RLTR18B	ERVK	chr3RLTR18B17772099	NonProperStrand	1	chr3	17772418	17772508	LTR	RLTR18B	ERVK	chr3RLTR18B17772399	NonProperStrand	1	1	-inf
chr12	105551302	105551402	LINE	L1Md_F2	L1	chr12L1Md_F2105550063	ProperStrand	1	chr12	105551406	105551496	Low_complexity	CT-rich	Low_complexity	chr12CT-rich105551432	NonProperStrand	1	1	-inf
chr11	69681702	69681802	LTR	RMER10B	ERVL	chr11RMER10B69681387	NonProperStrand	1	chr11	69681826	69681916	Low_complexity	T-rich	Low_complexity	chr11T-rich69681830	NonProperStrand	1	1	-inf
chr15	51832951	51833041	SINE	B1_Mus2	Alu	chr15B1_Mus251832923	ProperStrand	1	chr15	51813274	51813374	protein_coding	Rad21	intron	ENSMUSG00000022314	ProperStrand	45	1	-inf
chr15	81704911	81705027	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	chr7	98716835	98716851	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-9.0880
chr17	39846759	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	152330107	152332379	Simple_repeat	(TCCA)n	Simple_repeat	chr4(TCCA)n152332244	ProperStrand	5	2	-5.8332
chr11	76469607	76469698	DNA	RCHARR1	MER1_type	chr11RCHARR176469628	ProperStrand	1	chr11	76469502	76469602	SINE	B1_Mur1	Alu	chr11B1_Mur176469472	NonProperStrand	1	1	-inf
chr17	39848248	39848378	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	8386120	8388990	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	ProperStrand	10	1	-4.7139
chrX	13673593	13673616	LINE	L1Md_F2	L1	chrXL1Md_F213673452	NonProperStrand	2	chr9	72581890	72582013	protein_coding	Nedd4	intron	ENSMUSG00000032216	ProperStrand	32	2	-inf
chr17	39847919	39848007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	116229995	116230049	SINE	B4	B4	chr7B4116229840	ProperStrand	1	1	-inf
chr9	17987800	17987835	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr15	85177746	85177788	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	2	-13.4087
chr2	77981055	77981072	lincRNA	4930440I19Rik	intron	ENSMUSG00000085431	NonProperStrand	28	chr16	31079954	31080023	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	1	-10.2716
chr3	95673898	95673955	protein_coding-noncoding	Mrps21	utr3	ENSMUSG00000054312	NonProperStrand	1	chr3	95673481	95673552	protein_coding	Mrps21	intron	ENSMUSG00000054312	NonProperStrand	22	1	-inf
chr5	54712417	54712507	LINE	L1_Mus1	L1	chr5L1_Mus154712383	ProperStrand	1	chr5	54712190	54712290	LTR	ORR1D1	MaLR	chr5ORR1D154712035	NonProperStrand	1	1	-inf
chr17	39847253	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	76195513	76195554	SINE	B2_Mm2	B2	chr15B2_Mm276195448	NonProperStrand	1	1	-inf
chr6	3201470	3201509	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	49342670	49342686	protein_coding	Odz3	intron	ENSMUSG00000031561	ProperStrand	15	1	-5.5348
chr8	104456068	104456168	LINE	Lx3A	L1	chr8Lx3A104455160	NonProperStrand	1	chr8	104456192	104456282	LTR	RMER17D	ERVK	chr8RMER17D104456187	ProperStrand	1	1	-inf
chr2	5379266	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr12	82381320	82381387	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	1	-3.3315
chr8	107367500	107367547	LINE	L1Md_F2	L1	chr8L1Md_F2107366854	ProperStrand	4	chr2	60038509	60038566	protein_coding	Baz2b	intron	ENSMUSG00000026987	ProperStrand	70	1	-17.4765
chr3	107662703	107662730	DNA	Tigger7	MER2_type	chr3Tigger7107662612	NonProperStrand	1	chr17	39846865	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39845923	39845993	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr13	103819917	103819934	protein_coding	Mast4	intron	ENSMUSG00000034751	NonProperStrand	16	1	-4.3735
chr14	105146842	105146900	LINE	Lx3_Mus	L1	chr14Lx3_Mus105146228	ProperStrand	1	chr9	123462079	123462157	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	146261157	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	164075612	164076159	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	53	1	-5.3040
chr5	102047701	102047801	LTR	IAPEz-int	ERVK	chr5IAPEz-int102046091	NonProperStrand	1	chr5	102047883	102047973	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm102047863	NonProperStrand	1	1	-inf
chr11	98253320	98253373	protein_coding-noncoding	Pgap3	utr3	ENSMUSG00000038208	NonProperStrand	1	chr9	123461964	123462027	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr19	19812165	19812183	LINE	Lx	L1	chr19Lx19807278	ProperStrand	1	chr17	39848211	39848247	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr4	124918500	124918545	lincRNA	1700041M05Rik	intron	ENSMUSG00000087010	NonProperStrand	22	chr9	57923163	57923230	protein_coding	Stra6	intron	ENSMUSG00000032327	ProperStrand	16	1	-16.7758
chr11	97025710	97025810	protein_coding-noncoding	Kpnb1	utr3	ENSMUSG00000001440	NonProperStrand	1	chr11	97025119	97025209	protein_coding	Kpnb1	intron	ENSMUSG00000001440	NonProperStrand	15	1	-inf
chr11	68372093	68372183	SINE	B2_Mm1a	B2	chr11B2_Mm1a68372081	ProperStrand	13	chr11	68371935	68372057	SINE	B4	B4	chr11B468371864	ProperStrand	12	11	-inf
chr1	72171803	72171893	SINE	B2_Mm1t	B2	chr1B2_Mm1t72171825	NonProperStrand	3	chr1	72171604	72171704	SINE	B3	B2	chr1B372171506	NonProperStrand	2	2	-inf
chr13	104737627	104737692	LTR	IAPEz-int	ERVK	chr13IAPEz-int104737559	ProperStrand	3	chr13	104750442	104750477	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n104750422	NonProperStrand	1	1	-inf
chr4	103346613	103346686	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	107	chr18	20745554	20745603	protein_coding	Dsg2	intron	ENSMUSG00000044393	NonProperStrand	42	1	-11.5796
chrX	36605651	36605706	LINE	L1Md_F2	L1	chrXL1Md_F236605608	NonProperStrand	4	chr17	39848143	39848177	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-6.6701
chr17	39847796	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	95979656	96004233	SINE	B1_Mus2	Alu	chr11B1_Mus295979532	ProperStrand	2	1	-5.4040
chr17	39845265	39845353	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr8	68880386	68880443	protein_coding	March1	intron	ENSMUSG00000036469	NonProperStrand	24	2	-6.5910
chr1	171503068	171503108	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr16	30972327	30972357	sense_intronic	Gm15742	.	ENSMUSG00000087605	ProperStrand	35	1	-14.2025
chr17	86944602	86944618	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	chr10	62279185	62279211	protein_coding	Tet1	exon	ENSMUSG00000047146	ProperStrand	49	1	-10.5913
chr12	58961925	58962005	LINE	L1MCb	L1	chr12L1MCb58961815	ProperStrand	1	chr17	39846951	39846990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847927	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	65045715	65045734	LTR	RMER10A	ERVL	chr18RMER10A65045550	NonProperStrand	1	1	-inf
chr1	151793476	151793576	protein_coding	Pla2g4a	intron	ENSMUSG00000056220	ProperStrand	10	chr1	160683130	160683220	protein_coding	Pappa2	intron	ENSMUSG00000073530	NonProperStrand	7	1	-20.1042
chr7	99280564	99280616	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	chr12	91153584	91153678	protein_coding	Nrxn3	intron	ENSMUSG00000066392	NonProperStrand	182	1	-7.3737
chr2	22744851	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr3	62159171	62159229	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	2	-12.2874
chr10	115128067	115128167	Simple_repeat	(TC)n	Simple_repeat	chr10(TC)n115128086	NonProperStrand	1	chr3	31205997	31206087	lincRNA	Gm15496	intron	ENSMUSG00000085953	ProperStrand	11	1	-inf
chr13	112467953	112468011	DNA	Charlie2a	MER1_type	chr13Charlie2a112467741	ProperStrand	1	chr13	112468134	112468207	SINE	B1_Mus1	Alu	chr13B1_Mus1112468114	ProperStrand	1	1	-inf
chr8	119953301	119953318	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	chr1	74058147	74058199	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	1	-9.7503
chr10	76257088	76257104	protein_coding	Pcbp3	intron	ENSMUSG00000001120	NonProperStrand	7	chr13	97190553	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.4895
chr5	121752538	121752638	protein_coding	Gm15800	intron	ENSMUSG00000042744	ProperStrand	172	chr2	73564363	73564453	protein_coding	Chn1	intron	ENSMUSG00000056486	ProperStrand	42	1	-10.6284
chr17	39846786	39846814	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	152721822	152721944	protein_coding-noncoding	Hmcn1	utr3	ENSMUSG00000066842	ProperStrand	1	1	-inf
chr16	58644343	58644443	LINE	L1Md_F3	L1	chr16L1Md_F358641297	ProperStrand	1	chr12	21539281	21539371	LTR	MLT2B3	ERVL	chr12MLT2B321538838	ProperStrand	1	1	-inf
chr11	107348823	107348892	protein_coding	Psmd12	intron	ENSMUSG00000020720	NonProperStrand	27	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.5619
chr9	55187917	55188042	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	chr2	181632857	181632890	pseudogene	Gm5466	.	ENSMUSG00000083397	ProperStrand	11	1	-15.0222
chr11	84196367	84196443	protein_coding	Acaca	intron	ENSMUSG00000020532	ProperStrand	53	chr8	72374717	72374783	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	1	-10.9481
chr17	27957347	27957442	protein_coding	D17Wsu92e	utr5	ENSMUSG00000056692	NonProperStrand	106	chr12	80634381	80634426	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-10.5124
chr15	75896397	75896641	protein_coding	Scrib	intron	ENSMUSG00000022568	ProperStrand	50	chr12	21065670	21065764	protein_coding	Asap2	intron	ENSMUSG00000052632	ProperStrand	137	1	-10.7321
chr5	107542568	107542663	protein_coding	Tgfbr3	intron	ENSMUSG00000029287	NonProperStrand	60	chr2	180205759	180205784	protein_coding	Slco4a1	intron	ENSMUSG00000038963	NonProperStrand	161	1	-10.0419
chrX	131106115	131106137	protein_coding	Btk	intron	ENSMUSG00000031264	ProperStrand	7	chr8	12976873	12976978	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-13.0505
chr7	92668695	92668795	LTR	MT2A	ERVL	chr7MT2A92668652	ProperStrand	1	chr7	92668831	92668921	LTR	RLTR10B2	ERVK	chr7RLTR10B292668773	ProperStrand	2	1	-inf
chr4	131735432	131735522	LTR	ORR1B2	MaLR	chr4ORR1B2131735253	NonProperStrand	1	chr4	131735114	131735214	SINE	B4A	B4	chr4B4A131735076	ProperStrand	1	1	-inf
chr6	31214423	31214469	lincRNA	2210408F21Rik	intron	ENSMUSG00000087380	NonProperStrand	67	chr1	172486833	172486889	protein_coding	Nos1ap	utr5	ENSMUSG00000038473	NonProperStrand	169	1	-9.7232
chr6	65132432	65132532	LINE	L1_Mus1	L1	chr6L1_Mus165132334	NonProperStrand	1	chr6	65132184	65132274	SINE	B1_Mm	Alu	chr6B1_Mm65132170	NonProperStrand	1	1	-inf
chr3	41572051	41572164	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-9.2226
chr17	39848130	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	129600688	129601031	SINE	ID_B1	B4	chr4ID_B1129600917	NonProperStrand	8	1	-5.1688
chr11	116852286	116852578	SINE	B2_Mm2	B2	chr11B2_Mm2116852159	ProperStrand	11	chr11	51832112	51832215	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	1	-13.5467
chr9	21264917	21264991	protein_coding	Dnm2	intron	ENSMUSG00000033335	NonProperStrand	56	chr12	82419879	82419941	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	3	-20.7008
chr14	45079087	45079187	LINE	L1Md_T	L1	chr14L1Md_T45077217	NonProperStrand	1	chr14	45079219	45079309	LTR	RLTR10	ERVK	chr14RLTR1045079203	NonProperStrand	1	1	-inf
chr11	115586396	115586996	SINE	B1_Mm	Alu	chr11B1_Mm115586345	NonProperStrand	1	chr11	115586558	115586658	SINE	B2_Mm2	B2	chr11B2_Mm2115586496	NonProperStrand	1	1	-inf
chr11	109011655	109011706	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr6	91824417	91824511	SINE	B3	B2	chr6B391824292	ProperStrand	1	1	-inf
chr9	91510888	91510978	DNA	Charlie12	MER1_type	chr9Charlie1291510860	ProperStrand	1	chr9	91510710	91510810	LINE	Lx8	L1	chr9Lx891510638	ProperStrand	1	1	-inf
chr17	39847919	39847982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	46290900	46290955	SINE	B1F	Alu	chr18B1F46290897	NonProperStrand	1	1	-inf
chr2	94434253	94434355	LINE	L1MA5A	L1	chr2L1MA5A94434119	NonProperStrand	3	chr2	94434358	94434448	LINE	L1MA6	L1	chr2L1MA694434331	NonProperStrand	3	3	-inf
chr9	39270927	39270946	LINE	L1_Mur2	L1	chr9L1_Mur239270581	ProperStrand	5	chr17	39846297	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-9.1539
chr13	99431851	99431908	LTR	RLTR11A	ERVK	chr13RLTR11A99431477	NonProperStrand	2	chr17	39847682	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr18	21499137	21499227	LINE	MusHAL1	L1	chr18MusHAL121498899	NonProperStrand	1	chr16	92442852	92442952	protein_coding	Rcan1	intron	ENSMUSG00000022951	ProperStrand	210	1	-inf
chr1	53286603	53286703	protein_coding	Pms1	intron	ENSMUSG00000026098	ProperStrand	45	chr12	67661680	67661770	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-12.1538
chr13	13996502	13996543	LINE	L1Md_F	L1	chr13L1Md_F13994824	ProperStrand	4	chr11	87426784	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-17.4737
chr2	155467350	155467445	protein_coding	Trpc4ap	intron	ENSMUSG00000038324	ProperStrand	6	chr14	45299644	45299703	protein_coding	Gm8257	intron	ENSMUSG00000079265	ProperStrand	33	1	-18.1967
chr8	91643005	91643113	LINE	L1M4c	L1	chr8L1M4c91642931	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr13	64193474	64193524	LTR	MTC	MaLR	chr13MTC64193441	NonProperStrand	1	chr13	64209191	64210014	protein_coding	Slc35d2	intron	ENSMUSG00000033114	ProperStrand	21	1	-inf
chr2	138231449	138258863	protein_coding	Btbd3	intron	ENSMUSG00000062098	NonProperStrand	10	chr2	138202588	138212197	protein_coding	Btbd3	intron	ENSMUSG00000062098	ProperStrand	66	2	-19.8418
chr3	133471355	133471455	LTR	RMER16-int	ERVK	chr3RMER16-int133470761	NonProperStrand	5	chr7	19268332	19268422	protein_coding	Psg20	intron	ENSMUSG00000063305	ProperStrand	21	3	-20.8536
chr4	107053709	107053809	protein_coding-noncoding	Tmem48	utr5	ENSMUSG00000028614	NonProperStrand	1	chr4	107053835	107053925	protein_coding	Tmem48	intron	ENSMUSG00000028614	NonProperStrand	28	1	-inf
chr13	14754823	14754923	LINE	Lx7	L1	chr13Lx714754812	ProperStrand	1	chr13	14754953	14755043	LINE	Lx7	L1	chr13Lx714754909	ProperStrand	1	1	-inf
chr6	33606733	33606780	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr6	86378747	86378825	protein_coding	Tia1	intron	ENSMUSG00000071337	ProperStrand	14	1	-9.7566
chr17	39846473	39846519	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	103088898	103088961	SINE	B4A	B4	chr14B4A103088907	ProperStrand	2	1	-5.3533
chr17	31340164	31340254	LINE	L1MEd	L1	chr17L1MEd31340139	ProperStrand	1	chr17	31340278	31340378	SINE	B1_Mus2	Alu	chr17B1_Mus231340271	ProperStrand	1	1	-inf
chr2	5037116	5037216	SINE	B4	B4	chr2B45037115	NonProperStrand	1	chr2	5037009	5037099	SINE	RSINE1	B4	chr2RSINE15036961	NonProperStrand	1	1	-inf
chr4	44066844	44066933	protein_coding	Gne	intron	ENSMUSG00000028479	ProperStrand	12	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-9.8312
chr6	85492108	85492198	SINE	B1_Mur3	Alu	chr6B1_Mur385492049	NonProperStrand	1	chr6	85492389	85492489	SINE	B4A	B4	chr6B4A85492405	NonProperStrand	1	1	-inf
chr11	69658279	69658339	LINE	L1Md_F2	L1	chr11L1Md_F269658290	NonProperStrand	1	chr17	39847701	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	31931025	31931092	protein_coding	Mrpl33	intron	ENSMUSG00000029142	ProperStrand	100	chr8	60968385	60968426	protein_coding	Galntl6	intron	ENSMUSG00000061864	ProperStrand	140	1	-9.2968
chr17	39847051	39847081	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	78160394	78160414	protein_coding	Unc119	intron	ENSMUSG00000002058	ProperStrand	2	1	-5.3533
chr9	123461847	123461954	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr16	75601856	75601895	protein_coding	Rbm11	utr3	ENSMUSG00000032940	ProperStrand	3	1	-7.0114
chr5	147106619	147111019	protein_coding-noncoding	Cdk8	utr5	ENSMUSG00000029635	ProperStrand	14	chr5	147106797	147111191	protein_coding	Cdk8	intron	ENSMUSG00000029635	ProperStrand	81	10	-19.4263
chr2	13878957	13879000	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	12	chr5	115247202	115248609	protein_coding	Ankrd13a	intron	ENSMUSG00000041870	NonProperStrand	64	1	-15.1813
chr2	22744837	22744925	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	146261266	146261336	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	9	-20.7003
chr17	39847621	39847661	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	33650978	33651093	SINE	B3A	B2	chr17B3A33650971	ProperStrand	1	1	-inf
chr17	86034556	86034616	LINE	L1VL4	L1	chr17L1VL486033637	NonProperStrand	3	chr9	15316574	15316644	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-16.8189
chr2	87788515	87788615	LINE	L1Md_F2	L1	chr2L1Md_F287788499	NonProperStrand	1	chr2	87788313	87788403	LTR	IAPEY3_LTR	ERVK	chr2IAPEY3_LTR87788197	ProperStrand	1	1	-inf
chr17	70963669	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr6	29874120	29874179	protein_coding	Fam40b	intron	ENSMUSG00000039629	ProperStrand	8	1	-10.3164
chr17	39846664	39846717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	89017187	89017260	SINE	B3A	B2	chr11B3A89017143	NonProperStrand	3	1	-4.3017
chr3	138282747	138286694	LINE	L1M5	L1	chr3L1M5138282712	ProperStrand	1	chr3	138282794	138286751	Simple_repeat	(TTTC)n	Simple_repeat	chr3(TTTC)n138286574	ProperStrand	1	1	-inf
chr4	142301708	142301808	LTR	MLT1E1A	MaLR	chr4MLT1E1A142301664	ProperStrand	1	chr4	142301527	142301617	SINE	B4A	B4	chr4B4A142301534	NonProperStrand	1	1	-inf
chr3	89415820	89415877	protein_coding	Kcnn3	intron	ENSMUSG00000000794	NonProperStrand	62	chr8	70508367	70508442	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-7.3444
chr17	39847183	39847209	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	70232253	70232331	LTR	MurERV4_19-int	ERVK	chr4MurERV4_19-int70231386	NonProperStrand	1	1	-inf
chr17	39845849	39845923	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr14	34191513	34191597	protein_coding	Mapk8	utr3	ENSMUSG00000021936	ProperStrand	23	1	-3.6773
chr9	37653121	37653151	SINE	MIRb	MIR	chr9MIRb37653067	ProperStrand	5	chr9	123461822	123461909	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr1	63303227	63303294	LTR	MER54A	ERVL	chr1MER54A63303107	NonProperStrand	2	chr7	98815691	98815752	snRNA	ENSMUSG00000064403_U1	.	ENSMUSG00000064403	ProperStrand	2	1	-19.8939
chr9	114554564	114554664	SINE	B1_Mus1	Alu	chr9B1_Mus1114554507	NonProperStrand	8	chr9	114554734	114554824	SINE	B4	B4	chr9B4114554698	ProperStrand	7	7	-inf
chr8	106516975	106517070	Low_complexity	GA-rich	Low_complexity	chr8GA-rich106516987	ProperStrand	6	chr8	106517059	106517163	SINE	B1_Mus2	Alu	chr8B1_Mus2106517054	ProperStrand	6	6	-inf
chr5	147624914	147625014	SINE	B1_Mm	Alu	chr5B1_Mm147624881	NonProperStrand	1	chr5	147625177	147625267	SINE	B3	B2	chr5B3147625073	NonProperStrand	1	1	-inf
chr3	30679371	30680994	LINE	Lx9	L1	chr3Lx930680571	ProperStrand	1	chr11	87426782	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-inf
chr2	38564225	38564312	protein_coding	Nr5a1	intron	ENSMUSG00000026751	NonProperStrand	26	chr2	70425639	70425655	protein_coding	Gad1	intron	ENSMUSG00000070880	ProperStrand	4	1	-20.9996
chr10	54806250	54806340	LTR	ORR1D1-int	MaLR	chr10ORR1D1-int54806064	ProperStrand	1	chr10	54805894	54805994	LTR	ORR1D1	MaLR	chr10ORR1D154805749	ProperStrand	1	1	-inf
chr18	31908176	31908274	LTR	RMER20A	ERVK	chr18RMER20A31908154	NonProperStrand	1	chr3	69762512	69762560	Simple_repeat	(CACAG)n	Simple_repeat	chr3(CACAG)n69762386	ProperStrand	2	1	-inf
chrX	100155401	100155449	LINE	L1M4c	L1	chrXL1M4c100154980	NonProperStrand	1	chr12	109646209	109646300	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-inf
chrX	136733093	136733117	lincRNA	Gm15046	intron	ENSMUSG00000086441	ProperStrand	51	chr15	53142767	53142794	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	1	-11.0083
chr5	146260994	146261070	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	163064292	163084318	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	2	-3.2959
chr6	3201474	3201552	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	85691705	85691749	SINE	RSINE1	B4	chr11RSINE185691700	NonProperStrand	1	1	-inf
chr19	33117126	33117186	LINE	L1MA5A	L1	chr19L1MA5A33115732	NonProperStrand	10	chr6	93812417	93812439	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	2	-15.8057
chr8	77217460	77217476	lincRNA	Gm11033	intron	ENSMUSG00000079011	NonProperStrand	16	chr1	136220144	136220237	protein_coding	Ppfia4	intron	ENSMUSG00000026458	ProperStrand	22	1	-16.7826
chr16	11828593	11887589	protein_coding	Cpped1	intron	ENSMUSG00000065979	ProperStrand	72	chr11	88555029	88555085	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-5.9038
chr2	22744887	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	120259108	120259128	protein_coding	Nploc4	intron	ENSMUSG00000039703	NonProperStrand	167	1	-4.8070
chr10	76040935	76040973	protein_coding	Ftcd	intron	ENSMUSG00000001155	ProperStrand	14	chr13	44869620	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.3798
chr9	104056902	104056972	protein_coding	Dnajc13	intron	ENSMUSG00000032560	ProperStrand	36	chr5	118085938	118085998	protein_coding	Ksr2	intron	ENSMUSG00000061578	NonProperStrand	228	1	-10.3763
chr5	149935110	149935200	lincRNA	5730422E09Rik	intron	ENSMUSG00000086085	NonProperStrand	2	chr5	150001954	150002054	protein_coding	Uspl1	intron	ENSMUSG00000041264	ProperStrand	1	1	-inf
chr12	107976409	107976439	LINE	Lx5	L1	chr12Lx5107975918	ProperStrand	1	chr17	39846746	39846798	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846407	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	146651569	146651585	LTR	MTE2a	MaLR	chr3MTE2a146651349	ProperStrand	1	1	-inf
chr11	62604510	62604587	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr19	10429579	10429650	LTR	MLT1C	MaLR	chr19MLT1C10429494	NonProperStrand	1	1	-inf
chr8	58051920	58052020	LINE	L1MA5	L1	chr8L1MA558051859	NonProperStrand	1	chr8	58052391	58052481	SINE	B3	B2	chr8B358052392	NonProperStrand	1	1	-inf
chr17	39843770	39843818	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	35836035	35836264	snRNA	ENSMUSG00000065774_U6	.	ENSMUSG00000065774	ProperStrand	33	1	-4.0841
chr19	60549464	60549564	LTR	ORR1D2	MaLR	chr19ORR1D260549381	NonProperStrand	2	chr19	60549564	60549654	SINE	B1_Mm	Alu	chr19B1_Mm60549548	NonProperStrand	2	2	-inf
chr4	46471461	46472153	protein_coding	Anp32b	intron	ENSMUSG00000028333	ProperStrand	54	chr4	41117661	41117708	protein_coding	Ube2r2	intron	ENSMUSG00000036241	NonProperStrand	66	1	-12.0425
chr9	45767464	45767489	SINE	B2_Mm1a	B2	chr9B2_Mm1a45767446	NonProperStrand	1	chr11	34326702	34326803	protein_coding	Dock2	intron	ENSMUSG00000020143	NonProperStrand	17	1	-inf
chr15	99455805	99455889	protein_coding	Racgap1	intron	ENSMUSG00000023015	ProperStrand	19	chr9	123461931	123461951	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.1531
chr11	77799868	77799977	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	chr1	152840433	152840450	protein_coding	Hmcn1	utr5	ENSMUSG00000066842	NonProperStrand	30	2	-18.1795
chrX	9913917	9913933	DNA	Charlie1a	MER1_type	chrXCharlie1a9913548	NonProperStrand	1	chr17	39847438	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	74473217	74473277	protein_coding	1300001I01Rik	exon	ENSMUSG00000020741	NonProperStrand	18	chr16	43482328	43482345	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	1	-11.0796
chr8	91551610	91551742	protein_coding	Sall1	utr3	ENSMUSG00000031665	NonProperStrand	129	chr9	61914433	61914452	protein_coding	Glce	intron	ENSMUSG00000032252	ProperStrand	176	1	-8.3316
chr17	39843451	39843551	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	28822607	28822697	protein_coding	1700101E01Rik	intron	ENSMUSG00000079502	ProperStrand	41	2	-5.5741
chr12	4284810	4284832	protein_coding	Ncoa1	intron	ENSMUSG00000020647	ProperStrand	80	chr5	140047379	140047469	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	1	-8.0224
chr9	19658000	19658090	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chr4	136555300	136555400	protein_coding	Zbtb40	intron	ENSMUSG00000060862	ProperStrand	82	1	-13.0881
chr10	79053394	79053471	LTR	ORR1D1-int	MaLR	chr10ORR1D1-int79053312	ProperStrand	1	chr10	79053270	79053300	LTR	ORR1D1	MaLR	chr10ORR1D179053241	ProperStrand	1	1	-inf
chrX	87238396	87238423	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr5	75578794	75578870	protein_coding	Pdgfra	intron	ENSMUSG00000029231	ProperStrand	36	1	-10.5123
chr8	124931166	124931253	protein_coding	Zc3h18	intron	ENSMUSG00000017478	NonProperStrand	139	chr9	110281293	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-5.9018
chr4	3564207	3569387	LTR	IAPEY2_LTR	ERVK	chr4IAPEY2_LTR3564025	NonProperStrand	1	chr13	97190587	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr14	19779709	19781196	LINE	L1Md_F2	L1	chr14L1Md_F219780460	ProperStrand	4	chr14	19781258	19781358	LINE	L1Md_F2	L1	chr14L1Md_F219780606	ProperStrand	12	3	-inf
chr5	138166573	138166673	SINE	B1F	Alu	chr5B1F138166527	ProperStrand	1	chr5	138166660	138166750	SINE	B3A	B2	chr5B3A138166681	ProperStrand	2	1	-inf
chr7	46940213	46940265	LINE	L1Md_A	L1	chr7L1Md_A46939202	ProperStrand	3	chr8	73302553	73302629	protein_coding	Mast3	utr3	ENSMUSG00000031833	ProperStrand	91	1	-17.6227
chr10	59438614	59438631	SINE	B3	B2	chr10B359438585	NonProperStrand	1	chr9	65201724	65201795	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-inf
chr11	68147012	68147091	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	chr3	58251605	58251625	protein_coding	Tsc22d2	intron	ENSMUSG00000027806	NonProperStrand	5	1	-14.4206
chr4	38461935	38461953	LINE	Lx7	L1	chr4Lx738461901	ProperStrand	1	chr9	72747241	72747271	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-inf
chr13	55536006	55536360	LTR	IAPEY3-int	ERVK	chr13IAPEY3-int55536254	ProperStrand	1	chr17	39846509	39846551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	123985986	123986012	protein_coding	Vps33a	intron	ENSMUSG00000029434	NonProperStrand	50	chr17	33849675	33849691	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-13.6010
chr15	60938925	60939015	LINE	L1MD	L1	chr15L1MD60938856	NonProperStrand	1	chr15	60938763	60938863	LINE	Lx9	L1	chr15Lx960938642	NonProperStrand	1	1	-inf
chr12	8576861	8576923	protein_coding	Slc7a15	intron	ENSMUSG00000020600	NonProperStrand	3	chr9	123461934	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr13	24470798	24470888	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	chr5	58236996	58237096	protein_coding	Pcdh7	intron	ENSMUSG00000029108	NonProperStrand	10	1	-17.7681
chr2	31486671	31486761	SINE	B1F2	Alu	chr2B1F231486661	ProperStrand	2	chr2	31486811	31486911	SINE	B2_Mm2	B2	chr2B2_Mm231486795	ProperStrand	2	2	-inf
chr1	173423235	173423335	SINE	B1_Mus2	Alu	chr1B1_Mus2173423205	NonProperStrand	1	chr1	173422936	173423026	SINE	B2_Mm2	B2	chr1B2_Mm2173422840	NonProperStrand	1	1	-inf
chr9	110281285	110281334	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr5	121804587	121804689	protein_coding	Gm15800	intron	ENSMUSG00000042744	ProperStrand	172	1	-5.4863
chr17	39847192	39847256	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	72479069	72479131	LTR	MER21B	ERV1	chr2MER21B72478810	ProperStrand	1	1	-inf
chr2	38545538	38545625	SINE	RSINE1	B4	chr2RSINE138545464	NonProperStrand	1	chr17	24195411	24195469	protein_coding	Kctd5	intron	ENSMUSG00000016946	ProperStrand	24	1	-inf
chr10	25287822	25287848	LINE	L1VL2	L1	chr10L1VL225287808	ProperStrand	2	chr10	25287637	25287706	LINE	Lx	L1	chr10Lx25286985	ProperStrand	1	1	-inf
chr14	32289807	32289907	LTR	MTC	MaLR	chr14MTC32289833	ProperStrand	1	chr14	32289622	32289712	SINE	B3	B2	chr14B332289584	NonProperStrand	3	1	-inf
chr19	6402989	6403055	protein_coding-noncoding	Rasgrp2	utr5	ENSMUSG00000032946	ProperStrand	3	chr19	6402749	6402825	protein_coding	Rasgrp2	intron	ENSMUSG00000032946	ProperStrand	6	2	-inf
chr18	49892534	49892638	protein_coding	Dtwd2	intron	ENSMUSG00000024505	NonProperStrand	26	chr16	35068972	35069012	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	1	-11.5211
chr17	56286626	56287812	SINE	ID_B1	B4	chr17ID_B156286627	NonProperStrand	1	chr12	20433051	20433096	protein_coding	Gm10479	intron	ENSMUSG00000073184	ProperStrand	4	1	-inf
chr10	47635193	47635283	LINE	L1_Mm	L1	chr10L1_Mm47634670	NonProperStrand	1	chr10	47635629	47635729	Simple_repeat	(GAAA)n	Simple_repeat	chr10(GAAA)n47635640	ProperStrand	1	1	-inf
chr11	4519155	4519177	SINE	MIR3	MIR	chr11MIR34519116	NonProperStrand	1	chr11	4482514	4482605	protein_coding	Mtmr3	intron	ENSMUSG00000034354	ProperStrand	84	1	-inf
chr19	6373694	6374021	protein_coding	Sf1	exon	ENSMUSG00000024949	ProperStrand	69	chr4	48420155	48420217	protein_coding	Invs	intron	ENSMUSG00000028344	NonProperStrand	29	1	-13.2114
chr11	109011804	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	30024223	30024274	protein_coding	Yif1b	intron	ENSMUSG00000030588	ProperStrand	27	1	-7.6923
chr16	32644557	32644624	protein_coding	Tnk2	intron	ENSMUSG00000022791	ProperStrand	153	chr2	52124674	52124753	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-8.4907
chr12	78350927	78351012	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr9	59318236	59318279	protein_coding	Arih1	intron	ENSMUSG00000025234	NonProperStrand	60	1	-5.8960
chr8	29400158	29400248	LINE	Lx9	L1	chr8Lx929400056	ProperStrand	1	chr8	29400370	29400470	LINE	Lx9	L1	chr8Lx929400381	ProperStrand	1	1	-inf
chr2	112266402	112266426	LINE	Lx5	L1	chr2Lx5112265569	NonProperStrand	8	chr2	112349292	112351329	protein_coding	Aven	intron	ENSMUSG00000003604	ProperStrand	47	1	-16.6892
chr14	26921793	26921813	LTR	LTRIS_Mus	ERV1	chr14LTRIS_Mus26921730	NonProperStrand	2	chr14	26921222	26921311	LTR	MERVK26-int	ERVK	chr14MERVK26-int26920246	NonProperStrand	2	1	-19.8939
chr17	39847100	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	119038692	119038712	protein_coding	Tbc1d16	intron	ENSMUSG00000039976	ProperStrand	16	3	-5.9802
chr1	185413455	185414334	LTR	RLTR9A	ERVK	chr1RLTR9A185413350	ProperStrand	9	chr1	185411755	185413224	SINE	RSINE1	B4	chr1RSINE1185413123	ProperStrand	8	8	-inf
chr4	151147694	151147745	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr3	127596065	127596118	protein_coding	5730508B09Rik	intron	ENSMUSG00000050549	NonProperStrand	11	1	-12.8375
chr9	14567100	14567200	protein_coding	1700012B09Rik	intron	ENSMUSG00000031927	NonProperStrand	1	chr14	118128171	118128261	protein_coding	Gpc6	intron	ENSMUSG00000058571	ProperStrand	66	1	-inf
chr11	119874394	119874511	protein_coding	Aatk	intron	ENSMUSG00000025375	NonProperStrand	61	chr12	110692322	110692341	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-9.1619
chr1	186088605	186088643	LINE	L1MD	L1	chr1L1MD186088601	ProperStrand	5	chr16	22119817	22119932	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-15.1071
chr11	87426746	87426883	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr9	123461960	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-3.5630
chr17	39847889	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	119344608	119344955	SINE	RSINE1	B4	chr8RSINE1119344812	ProperStrand	1	1	-inf
chr13	66065942	66066032	LINE	L1_Mm	L1	chr13L1_Mm66065662	NonProperStrand	1	chr13	65382633	65382733	protein_coding	Zfp369	intron	ENSMUSG00000021514	ProperStrand	2	1	-inf
chr19	3540965	3541055	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	chr7	135596444	135596544	protein_coding	Tial1	intron	ENSMUSG00000030846	NonProperStrand	2	1	-16.9377
chr8	115784972	115785074	LINE	Lx7	L1	chr8Lx7115783303	ProperStrand	1	chr10	128174731	128174821	protein_coding	Dgka	intron	ENSMUSG00000025357	ProperStrand	2	1	-inf
chr17	39843765	39843819	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	35848205	35848268	LTR	IAPEz-int	ERVK	chr1IAPEz-int35845701	ProperStrand	4	1	-8.4460
chr17	39846453	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	119164567	119164590	protein_coding	Cdyl2	intron	ENSMUSG00000031758	NonProperStrand	5	1	-3.1907
chr7	137403513	137403577	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-8.0580
chr11	62085728	62085825	protein_coding	Zswim7	intron	ENSMUSG00000014243	NonProperStrand	10	chr11	35139327	35139375	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-12.5163
chr12	98869603	98869693	SINE	B3	B2	chr12B398869597	NonProperStrand	1	chr12	98869860	98869960	SINE	B4A	B4	chr12B4A98869814	ProperStrand	1	1	-inf
chr6	43336250	43336344	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	chr11	88407077	88407142	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-7.1189
chr17	39847914	39848004	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	87922209	87922309	LTR	MERVL-int	ERVL	chr6MERVL-int87921564	ProperStrand	2	1	-5.4040
chr17	39847277	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	73751106	73751156	Simple_repeat	(TGGG)n	Simple_repeat	chr15(TGGG)n73751090	ProperStrand	1	1	-inf
chrX	151085654	151086206	LINE	L1Md_F2	L1	chrXL1Md_F2151085846	NonProperStrand	15	chrX	151079282	151079946	LINE	Lx2B	L1	chrXLx2B151078752	ProperStrand	1	1	-inf
chr2	132025799	132025888	antisense	Gm14051	.	ENSMUSG00000086756	NonProperStrand	17	chr9	123461866	123461919	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr3	95172378	95172444	LTR	MERVL-int	ERVL	chr3MERVL-int95167994	ProperStrand	34	chr11	53776419	53776480	protein_coding	Slc22a21	intron	ENSMUSG00000063652	NonProperStrand	19	1	-15.5052
chr17	39847216	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	11254174	11254191	lincRNA	Gm16652	intron	ENSMUSG00000086492	ProperStrand	2	1	-6.5615
chr9	96698248	96698298	LTR	ORR1D2	MaLR	chr9ORR1D296698249	ProperStrand	1	chr17	39843394	39843488	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr2	32154505	32157248	protein_coding-noncoding	Golga2	utr5	ENSMUSG00000002546	ProperStrand	4	chr2	32153688	32157378	protein_coding	Golga2	intron	ENSMUSG00000002546	ProperStrand	57	3	-inf
chr7	30193894	30193964	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	ProperStrand	147	chr13	97190555	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.4287
chr4	133587072	133587162	LTR	MTD	MaLR	chr4MTD133586934	NonProperStrand	1	chr4	133587217	133587317	LTR	RLTR10C	ERVK	chr4RLTR10C133587245	NonProperStrand	1	1	-inf
chr6	41966902	41966992	LTR	ETnERV-int	ERVK	chr6ETnERV-int41966768	NonProperStrand	1	chr6	41967388	41967488	LTR	ETnERV-int	ERVK	chr6ETnERV-int41967195	NonProperStrand	2	1	-inf
chr2	115760093	115760179	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	chr9	40801946	40802007	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.5676
chr17	39845849	39845924	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr9	4757504	4757568	protein_coding	Gria4	intron	ENSMUSG00000025892	ProperStrand	12	1	-4.9428
chr17	39847763	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	10029867	10029884	protein_coding	Usp14	intron	ENSMUSG00000047879	NonProperStrand	5	1	-3.2379
chr18	77982409	77983561	LTR	ORR1D1	MaLR	chr18ORR1D177982466	ProperStrand	2	chr18	77982320	77982410	SINE	RSINE1	B4	chr18RSINE177982301	NonProperStrand	2	2	-inf
chr1	163974390	163974490	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	chr8	126925776	126925866	protein_coding	Pgbd5	intron	ENSMUSG00000050751	NonProperStrand	5	1	-16.7357
chr5	146261141	146261178	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	31960894	31960910	protein_coding	Ncbp2	intron	ENSMUSG00000022774	NonProperStrand	2	1	-12.4657
chr17	39847844	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	6709071	6709139	SINE	PB1	Alu	chr7PB16709080	ProperStrand	1	1	-inf
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	chr12	80441369	80441452	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-13.1264
chr6	82696740	82696809	protein_coding	Hk2	intron	ENSMUSG00000000628	ProperStrand	54	chr9	118674950	118675012	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.1785
chr14	19790349	19790399	LINE	Lx2	L1	chr14Lx219788632	ProperStrand	19	chr8	4303565	4303625	protein_coding	Elavl1	intron	ENSMUSG00000040028	ProperStrand	23	1	-16.2874
chr7	122140636	122140737	LTR	RLTR16	ERVK	chr7RLTR16122140639	NonProperStrand	2	chr1	9740146	9740236	lincRNA	1700034P13Rik	intron	ENSMUSG00000085661	NonProperStrand	11	2	-inf
chr12	31654903	31660776	LTR	MTA_Mm	MaLR	chr12MTA_Mm31654814	NonProperStrand	2	chr2	180992499	180992516	protein_coding	Gmeb2	intron	ENSMUSG00000038705	ProperStrand	2	1	-19.8939
chr1	143790770	143790838	DNA	MER63C	AcHobo	chr1MER63C143790619	NonProperStrand	1	chr1	143783482	143783540	LINE	L1_Mus1	L1	chr1L1_Mus1143783077	NonProperStrand	1	1	-inf
chr11	35953717	35953836	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-9.6475
chr12	76303588	76303688	LINE	L1M5	L1	chr12L1M576303462	NonProperStrand	2	chr12	76303723	76303813	LINE	Lx5	L1	chr12Lx576303710	ProperStrand	2	2	-inf
chr12	86688067	86688129	protein_coding	Tmed10	intron	ENSMUSG00000021248	NonProperStrand	20	chr4	149120031	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.7787
chr11	105972107	105972369	protein_coding	Map3k3	intron	ENSMUSG00000020700	ProperStrand	11	chr1	63574711	63574852	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-11.5180
chr2	23317928	23318028	LINE	L1VL4	L1	chr2L1VL423317814	NonProperStrand	1	chr2	23317576	23317666	LINE	MusHAL1	L1	chr2MusHAL123316905	NonProperStrand	1	1	-inf
chr10	105167670	105167770	LTR	RLTR17	ERVK	chr10RLTR17105167498	NonProperStrand	1	chr10	105167383	105167473	LTR	RMER12	ERVK	chr10RMER12105167341	ProperStrand	1	1	-inf
chr17	39846433	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	98860734	98864663	protein_coding	Tuba1c	intron	ENSMUSG00000043091	NonProperStrand	30	7	-7.2061
chr11	74618632	74618740	protein_coding	Mettl16	intron	ENSMUSG00000010554	ProperStrand	10	chr6	128799446	128799480	protein_coding	BC035044	utr3	ENSMUSG00000090164	ProperStrand	6	1	-22.0401
chr4	39088992	39089082	LINE	L1VL4	L1	chr4L1VL439087998	NonProperStrand	1	chr4	39089186	39089286	LINE	L1VL4	L1	chr4L1VL439089136	NonProperStrand	1	1	-inf
chr17	39847162	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	99656361	99656444	protein_coding	Pgm2	intron	ENSMUSG00000025791	ProperStrand	5	1	-4.3348
chr4	90285149	90285237	LTR	MTE-int	MaLR	chr4MTE-int90284331	ProperStrand	1	chr4	90285359	90285459	SINE	B1_Mus1	Alu	chr4B1_Mus190285284	ProperStrand	1	1	-inf
chr6	18980718	18980808	LINE	Lx9	L1	chr6Lx918980651	ProperStrand	1	chr6	18980959	18981059	LINE	Lx9	L1	chr6Lx918980983	ProperStrand	1	1	-inf
chr16	84721521	84721542	protein_coding	Mrpl39	intron	ENSMUSG00000022889	NonProperStrand	1	chr1	63574806	63574853	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-inf
chr11	109011655	109011712	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	120082089	120082160	protein_coding	Plcg2	intron	ENSMUSG00000034330	NonProperStrand	14	1	-9.0323
chr10	122565824	122565914	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr2	150175298	150175398	protein_coding	3300002I08Rik	intron	ENSMUSG00000063364	ProperStrand	1	1	-inf
chr10	40258602	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr15	58933389	58933407	LTR	RLTR14	ERV1	chr15RLTR1458933384	NonProperStrand	4	1	-10.9810
chr17	39846749	39846816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	8814201	8814258	SINE	ID4	ID	chr10ID48814180	ProperStrand	1	1	-inf
chr7	102134606	102134722	LTR	IAPEz-int	ERVK	chr7IAPEz-int102132359	ProperStrand	2	chr2	127838113	127838129	protein_coding	Acoxl	intron	ENSMUSG00000027380	ProperStrand	8	1	-23.4058
chr1	106546577	106546609	LINE	L1_Mur3	L1	chr1L1_Mur3106546366	NonProperStrand	1	chr4	116906939	116907067	protein_coding	Gm1661	intron	ENSMUSG00000060268	NonProperStrand	9	1	-inf
chrX	88932960	88933060	LTR	RLTR41	ERV1	chrXRLTR4188932956	NonProperStrand	1	chrX	88932765	88932855	LTR	RMER6D	ERVK	chrXRMER6D88932784	NonProperStrand	1	1	-inf
chr9	123461833	123461895	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr13	3576756	3576800	protein_coding	BC016423	intron	ENSMUSG00000033799	ProperStrand	11	1	-4.1956
chr6	33773781	33773810	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-4.0240
chr11	109011657	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	121887346	121887428	SINE	PB1D7	Alu	chr8PB1D7121887329	ProperStrand	1	1	-inf
chr9	41455220	41455320	Low_complexity	CT-rich	Low_complexity	chr9CT-rich41455249	NonProperStrand	1	chr9	41455498	41455588	SINE	B1_Mur4	Alu	chr9B1_Mur441455494	ProperStrand	1	1	-inf
chr12	59040422	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr5	27037784	27037874	LTR	MTEb	MaLR	chr5MTEb27037526	NonProperStrand	2	1	-17.5474
chr11	77484185	77484275	LTR	ORR1A4	MaLR	chr11ORR1A477484017	NonProperStrand	1	chr11	77484350	77484450	SINE	B1_Mus1	Alu	chr11B1_Mus177484289	NonProperStrand	1	1	-inf
chr10	81143781	81143881	LTR	RMER10B	ERVL	chr10RMER10B81143808	NonProperStrand	1	chr10	81143624	81143714	Simple_repeat	(GA)n	Simple_repeat	chr10(GA)n81143625	ProperStrand	2	1	-inf
chr10	96519337	96519357	LINE	L1MC	L1	chr10L1MC96519200	ProperStrand	1	chr5	108582348	108582435	protein_coding	Ccdc18	intron	ENSMUSG00000056531	NonProperStrand	57	1	-inf
chr12	100967214	100967314	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	NonProperStrand	8	chr7	116225215	116225305	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-15.0017
chr6	15530771	15530871	LINE	L1_Mus1	L1	chr6L1_Mus115530688	ProperStrand	1	chr6	15530555	15530645	LINE	L1_Mus2	L1	chr6L1_Mus215530398	ProperStrand	1	1	-inf
chr14	94910622	94910712	LINE	Lx7	L1	chr14Lx794910378	NonProperStrand	1	chr14	94910286	94910386	SINE	PB1D9	Alu	chr14PB1D994910261	NonProperStrand	1	1	-inf
chr19	7462744	7462783	SINE	B1_Mus1	Alu	chr19B1_Mus17462748	NonProperStrand	1	chr19	7464355	7464416	SINE	B3	B2	chr19B37464276	NonProperStrand	1	1	-inf
chr7	6578044	6578090	LINE	L1Md_F	L1	chr7L1Md_F6577595	NonProperStrand	2	chr9	123461991	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr7	89307208	89338498	LTR	RLTR44-int	ERVK	chr7RLTR44-int89307196	ProperStrand	1	chr7	89338640	89338679	protein_coding	Sh3gl3	intron	ENSMUSG00000030638	NonProperStrand	9	1	-inf
chr14	118521505	118521528	protein_coding	Tgds	intron	ENSMUSG00000022130	ProperStrand	13	chr17	26280233	26280266	protein_coding	Axin1	exon	ENSMUSG00000024182	ProperStrand	20	1	-17.4329
chr17	39847659	39847687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	148521343	148521415	LTR	RMER17B	ERVK	chr4RMER17B148520567	ProperStrand	4	1	-3.7035
chr1	171503045	171503138	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.5960
chr11	32726949	32727049	LINE	L1MD	L1	chr11L1MD32726778	NonProperStrand	4	chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr18	57547055	57547113	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	19	chr3	13848932	13849012	protein_coding	Ralyl	intron	ENSMUSG00000039717	ProperStrand	9	1	-18.1720
chr17	34032392	34032548	LTR	ORR1A2-int	MaLR	chr17ORR1A2-int34032375	ProperStrand	7	chr17	34032296	34032386	SINE	B1_Mus2	Alu	chr17B1_Mus234032228	ProperStrand	7	7	-inf
chr18	17707440	17707530	LTR	RMER15	ERVL	chr18RMER1517707406	ProperStrand	1	chr18	17707198	17707298	LTR	RMER20B	ERVK	chr18RMER20B17706900	NonProperStrand	1	1	-inf
chr9	123461870	123461906	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	69125643	69125761	protein_coding	Ppm1l	intron	ENSMUSG00000027784	NonProperStrand	8	1	-4.8360
chr2	180913805	180913896	LTR	RMER19B	ERVK	chr2RMER19B180913800	ProperStrand	1	chr2	180913699	180913799	SINE	B2_Mm2	B2	chr2B2_Mm2180913630	ProperStrand	1	1	-inf
chr2	22744849	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	29693295	29693370	protein_coding	Eml6	intron	ENSMUSG00000044072	NonProperStrand	99	1	-5.8209
chr18	23393830	23393869	LINE	Lx2	L1	chr18Lx223388781	ProperStrand	1	chr9	109115707	109115741	LTR	ETnERV2-int	ERVK	chr9ETnERV2-int109115495	NonProperStrand	1	1	-inf
chr14	50466119	50466147	LINE	L1Md_F2	L1	chr14L1Md_F250464365	NonProperStrand	3	chr17	39845405	39845423	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	1	-8.2800
chr5	111349560	111349613	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	chr4	126167034	126167532	protein_coding	Eif2c4	utr3	ENSMUSG00000042500	ProperStrand	92	1	-8.8540
chr9	113756397	113756426	protein_coding	Clasp2	intron	ENSMUSG00000033392	ProperStrand	70	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-8.8301
chr14	107601679	107601779	LTR	ORR1C2-int	MaLR	chr14ORR1C2-int107601687	NonProperStrand	1	chr14	107601950	107602040	LTR	ORR1C2-int	MaLR	chr14ORR1C2-int107601884	NonProperStrand	1	1	-inf
chr3	88694858	88694945	protein_coding	Gon4l	utr5	ENSMUSG00000054199	ProperStrand	66	chr7	25396459	25396477	protein_coding	Phldb3	exon	ENSMUSG00000074277	ProperStrand	14	1	-14.7874
chr11	109011784	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	129164526	129164602	LTR	ORR1D1	MaLR	chr5ORR1D1129164293	ProperStrand	1	1	-inf
chr5	146261266	146261319	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	17776747	17776787	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-5.9858
chr3	96269868	96269927	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr16	44161358	44161434	protein_coding	Naa50	utr3	ENSMUSG00000022698	ProperStrand	41	1	-13.7720
chr1	3027853	3027953	LINE	L1Md_A	L1	chr1L1Md_A3027807	ProperStrand	1	chr1	3027588	3027678	SINE	ID_B1	B4	chr1ID_B13027594	NonProperStrand	1	1	-inf
chr2	25946549	25946677	protein_coding	Nacc2	intron	ENSMUSG00000026932	ProperStrand	67	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-8.6805
chr17	39846411	39846435	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	9269410	9269426	protein_coding	Clvs1	intron	ENSMUSG00000041216	ProperStrand	5	1	-3.1907
chr10	81051320	81052223	protein_coding-noncoding	Tle2	utr5	ENSMUSG00000034771	NonProperStrand	11	chr10	81051246	81060131	protein_coding	Tle2	exon	ENSMUSG00000034771	NonProperStrand	28	5	-inf
chr8	83693828	83693942	SINE	B3A	B2	chr8B3A83693849	NonProperStrand	1	chr5	135376531	135376549	Simple_repeat	(TGGA)n	Simple_repeat	chr5(TGGA)n135376516	NonProperStrand	1	1	-inf
chr2	92365494	92365730	lincRNA	Gm13814	intron	ENSMUSG00000085261	NonProperStrand	4	chr17	50420139	50420163	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-15.6291
chr17	39847438	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	12857089	12857138	SINE	MIR	MIR	chr10MIR12857068	NonProperStrand	1	1	-inf
chr1	165982134	165982234	protein_coding	Sele	intron	ENSMUSG00000026582	NonProperStrand	12	chr4	100831777	100831867	protein_coding	Jak1	intron	ENSMUSG00000028530	NonProperStrand	8	1	-19.5831
chr7	5008543	5008674	lincRNA	Gm15510	exon	ENSMUSG00000086604	ProperStrand	17	chr7	5008660	5008769	protein_coding-noncoding	Ccdc106	utr5	ENSMUSG00000035228	NonProperStrand	8	7	-20.7930
chr9	123461965	123462002	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	86089557	86089604	protein_coding	Med13	intron	ENSMUSG00000034297	ProperStrand	27	2	-4.4791
chr7	19710615	19710649	protein_coding	Fbxo46	intron	ENSMUSG00000050428	NonProperStrand	48	chr5	77332048	77332203	protein_coding	Aasdh	intron	ENSMUSG00000055923	NonProperStrand	11	1	-15.9351
chr5	140433130	140437314	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	81	chr4	104621802	104621828	protein_coding	1700024P16Rik	intron	ENSMUSG00000078612	ProperStrand	64	1	-11.2889
chr18	44418364	44418464	LTR	IAPEz-int	ERVK	chr18IAPEz-int44418347	NonProperStrand	16	chr18	44418273	44418363	LTR	IAPLTR2b	ERVK	chr18IAPLTR2b44418011	NonProperStrand	2	2	-inf
chr2	93421851	93421868	LTR	MTE2a	MaLR	chr2MTE2a93421498	ProperStrand	6	chr19	5796311	5796400	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-9.1125
chr4	132352911	132352988	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	276	chr9	110281288	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-4.5758
chr13	84250824	84250878	LINE	L1Md_T	L1	chr13L1Md_T84250429	ProperStrand	1	chr17	39843734	39843764	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr5	97420116	97420216	LINE	Lx9	L1	chr5Lx997419802	ProperStrand	1	chr5	143038005	143038026	LTR	RLTR11A	ERVK	chr5RLTR11A143037807	NonProperStrand	4	1	-inf
chr17	39843396	39843489	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr1	182411458	182411490	protein_coding	6330403A02Rik	intron	ENSMUSG00000053963	NonProperStrand	5	1	-7.4674
chr16	23108954	23109017	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr2	27539867	27539920	protein_coding	Rxra	intron	ENSMUSG00000015846	NonProperStrand	11	1	-13.3767
chr5	103775218	103775317	LINE	Lx6	L1	chr5Lx6103775190	NonProperStrand	11	chr5	103775095	103775185	Simple_repeat	(CCTG)n	Simple_repeat	chr5(CCTG)n103775020	ProperStrand	5	5	-inf
chr13	109650808	109650898	protein_coding-noncoding	Pde4d	utr5	ENSMUSG00000021699	ProperStrand	1	chr13	109661862	109661962	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-inf
chr4	109307215	109307315	processed_transcript	Gm12811	.	ENSMUSG00000087641	NonProperStrand	5	chr4	109467374	109467464	protein_coding	Faf1	exon	ENSMUSG00000010517	ProperStrand	9	1	-inf
chr9	7798437	7798516	LTR	RMER10A	ERVL	chr9RMER10A7798286	ProperStrand	1	chr2	120585152	120585182	protein_coding	Ttbk2	intron	ENSMUSG00000090100	NonProperStrand	17	1	-inf
chr12	6710345	6710441	LTR	IAP-d-int	ERVK	chr12IAP-d-int6708067	ProperStrand	1	chr17	39846483	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	44869602	44869715	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-4.5574
chr10	123284473	123284490	LTR	MTEa-int	MaLR	chr10MTEa-int123283953	ProperStrand	1	chr2	156262785	156262909	protein_coding	Epb4.1l1	intron	ENSMUSG00000027624	ProperStrand	54	1	-inf
chr11	120841501	120841592	protein_coding	Csnk1d	intron	ENSMUSG00000025162	ProperStrand	96	chr3	25976012	25976037	protein_coding	Nlgn1	intron	ENSMUSG00000063887	NonProperStrand	13	1	-14.1987
chr17	39846758	39846816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	75313207	75313255	Simple_repeat	(TC)n	Simple_repeat	chr10(TC)n75313191	ProperStrand	1	1	-inf
chr5	53163655	53163745	LTR	RMER6A	ERVK	chr5RMER6A53163472	ProperStrand	1	chr5	53164050	53164150	SINE	B4A	B4	chr5B4A53163991	NonProperStrand	1	1	-inf
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr17	56005867	56005894	protein_coding	Zfp119a	exon	ENSMUSG00000057835	ProperStrand	21	1	-8.6792
chr17	39847165	39847194	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	24599916	24600033	SINE	B1_Mus1	Alu	chr17B1_Mus124599910	ProperStrand	9	1	-3.1539
chr7	130722683	130722783	LINE	Lx7	L1	chr7Lx7130722608	NonProperStrand	1	chr7	130722477	130722567	SINE	PB1D9	Alu	chr7PB1D9130722465	ProperStrand	1	1	-inf
chr3	65958424	65958450	protein_coding	Veph1	intron	ENSMUSG00000027831	NonProperStrand	9	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.4355
chr17	83368742	83368780	LINE	L1VL4	L1	chr17L1VL483367946	NonProperStrand	2	chr17	39846962	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	109011645	109011670	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	7773641	7773717	protein_coding	Porcn	intron	ENSMUSG00000031169	NonProperStrand	13	1	-9.1857
chr10	40287642	40287702	LINE	Lx2A	L1	chr10Lx2A40287217	NonProperStrand	6	chr2	35175292	35175369	protein_coding	Stom	intron	ENSMUSG00000026880	NonProperStrand	10	1	-21.3688
chr17	39847011	39847047	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	103288348	103288402	LTR	MTB_Mm	MaLR	chr3MTB_Mm103288359	NonProperStrand	1	1	-inf
chr13	44869614	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr3	104650971	104652752	protein_coding	Capza1	intron	ENSMUSG00000070372	NonProperStrand	23	1	-6.3731
chr13	97967397	97970320	LTR	MT2B2	ERVL	chr13MT2B297969045	NonProperStrand	2	chr13	97967294	97967394	protein_coding	Hexb	intron	ENSMUSG00000021665	ProperStrand	8	2	-inf
chr7	65328953	65329633	LINE	L1Md_T	L1	chr7L1Md_T65326087	NonProperStrand	4	chr5	146260994	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-10.6768
chr4	133273528	133273563	protein_coding	Arid1a	intron	ENSMUSG00000007880	ProperStrand	53	chr2	5379296	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.7867
chr10	21480510	21480529	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	11	chr10	119865046	119865075	protein_coding	Hmga2	intron	ENSMUSG00000056758	NonProperStrand	15	1	-18.2570
chr5	139417990	139418042	LTR	MT2B	ERVL	chr5MT2B139417638	NonProperStrand	2	chr9	123461957	123462046	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr11	106501272	106501317	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	28	chr11	117157271	117157326	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-11.7113
chr2	5611243	5611312	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr9	15382219	15382237	protein_coding	Ccdc67	intron	ENSMUSG00000039977	NonProperStrand	12	1	-7.7556
chr11	80394411	80394502	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	chr13	44869605	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.5895
chr3	88806308	88806391	protein_coding	Ash1l	intron	ENSMUSG00000028053	ProperStrand	44	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.5843
chr12	81129463	81129519	LINE	L1ME1	L1	chr12L1ME181129304	NonProperStrand	1	chr14	122332758	122332790	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-inf
chr17	39846461	39846532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	43532766	43532814	SINE	B4A	B4	chr10B4A43532750	ProperStrand	2	1	-5.3533
chr11	109011789	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	18933111	18933129	protein_coding	Xkr5	utr3	ENSMUSG00000039814	NonProperStrand	7	1	-10.4933
chr9	79328619	79328709	LTR	MTC	MaLR	chr9MTC79328320	NonProperStrand	1	chr9	79328718	79328818	SINE	RSINE1	B4	chr9RSINE179328736	ProperStrand	1	1	-inf
chr18	75002713	75002759	LTR	ORR1E	MaLR	chr18ORR1E75002647	ProperStrand	7	chr2	5379264	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.8922
chr9	95960667	95960767	LTR	ORR1A4-int	MaLR	chr9ORR1A4-int95960149	ProperStrand	1	chr9	95960967	95961057	SINE	B2_Mm1a	B2	chr9B2_Mm1a95960981	ProperStrand	1	1	-inf
chr5	132415760	132415807	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr6	56732548	56732636	protein_coding	Kbtbd2	intron	ENSMUSG00000059486	NonProperStrand	3	1	-13.5646
chr5	32798251	32798351	protein_coding	Ppp1cb	intron	ENSMUSG00000014956	ProperStrand	3	chr5	66074686	66074776	protein_coding	Pds5a	intron	ENSMUSG00000029202	ProperStrand	49	1	-18.9265
chr6	122731422	122731522	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr18	36299839	36299929	protein_coding	Nrg2	intron	ENSMUSG00000060275	NonProperStrand	30	2	-16.4312
chr17	39846750	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	76452680	76452753	SINE	RSINE1	B4	chr11RSINE176452633	NonProperStrand	1	1	-inf
chr13	29964403	29964467	SINE	B1_Mus1	Alu	chr13B1_Mus129964337	ProperStrand	7	chr13	29957802	29957849	SINE	B3	B2	chr13B329957718	NonProperStrand	1	1	-inf
chr5	53590471	53636007	LTR	MLT2D	ERVL	chr5MLT2D53635798	NonProperStrand	5	chr5	53590375	53590465	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	4	-20.5618
chr14	63195752	63195881	protein_coding	Fam124a	intron	ENSMUSG00000035184	ProperStrand	5	chr15	80931745	80931761	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	1	-15.2395
chr4	116377368	116377417	protein_coding	Mmachc	intron	ENSMUSG00000028690	ProperStrand	3	chr17	66422293	66422396	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	1	-15.7313
chr17	39847863	39847909	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	78275842	78275956	SINE	B3	B2	chr11B378275783	NonProperStrand	1	1	-inf
chr5	47075148	47075238	LINE	L1_Mus4	L1	chr5L1_Mus447074873	NonProperStrand	1	chr5	47075444	47075544	LTR	MTA_Mm	MaLR	chr5MTA_Mm47075249	NonProperStrand	1	1	-inf
chr14	51082822	51082921	LINE	L1_Mus3	L1	chr14L1_Mus351082283	NonProperStrand	1	chr17	39848099	39848158	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr10	62845534	62860150	protein_coding	Dnajc12	utr5	ENSMUSG00000036764	NonProperStrand	88	chr16	19883804	19883928	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	2	-12.9717
chr2	22744837	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	114852004	114852029	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-4.1740
chr9	123461882	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr1	160679491	160679510	protein_coding	Pappa2	intron	ENSMUSG00000073530	NonProperStrand	7	1	-5.1121
chr17	39846956	39846996	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	121209104	121209197	SINE	B3A	B2	chr4B3A121209040	ProperStrand	1	1	-inf
chr8	85050453	85050521	LINE	L1Md_A	L1	chr8L1Md_A85049904	NonProperStrand	3	chr17	39846816	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr18	75368051	75368134	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	chr2	20730677	20730755	protein_coding	Etl4	exon	ENSMUSG00000036617	ProperStrand	324	1	-4.5684
chr15	100218775	100218881	protein_coding	Slc11a2	utr3	ENSMUSG00000023030	NonProperStrand	35	chr9	123462112	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.7764
chr11	62545996	62546086	LINE	L1M2	L1	chr11L1M262545952	NonProperStrand	1	chr11	62546187	62546288	SINE	B1_Mur1	Alu	chr11B1_Mur162546199	ProperStrand	1	1	-inf
chr2	168199730	168199830	LTR	RLTR1B	ERV1	chr2RLTR1B168199305	NonProperStrand	3	chr2	168199891	168199981	SINE	B1_Mur2	Alu	chr2B1_Mur2168199879	NonProperStrand	1	1	-inf
chr19	5213705	5213732	protein_coding	Pacs1	intron	ENSMUSG00000024855	ProperStrand	45	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.1430
chr1	179216120	179216215	LTR	MLT1E1A	MaLR	chr1MLT1E1A179215923	NonProperStrand	1	chr11	5441217	5441275	protein_coding	Ccdc117	intron	ENSMUSG00000020482	ProperStrand	26	1	-inf
chr17	39847656	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	21716754	21716858	SINE	B1_Mus1	Alu	chr13B1_Mus121716766	ProperStrand	5	2	-5.9065
chr11	30819953	30820034	LINE	L1_Mus4	L1	chr11L1_Mus430819793	ProperStrand	5	chr17	39846428	39846451	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr4	121169710	121169757	LINE	L1Md_A	L1	chr4L1Md_A121167063	NonProperStrand	3	chr17	39846452	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-8.0300
chr1	120088679	120088727	LINE	L1Md_F2	L1	chr1L1Md_F2120085028	NonProperStrand	1	chr2	5379251	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr1	162675059	162675176	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	chr13	97190561	97190598	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1761
chr11	97781638	97781761	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr16	32675669	32675706	protein_coding	Tnk2	exon	ENSMUSG00000022791	ProperStrand	153	1	-11.9154
chr3	87015943	87016033	LTR	ORR1D2-int	MaLR	chr3ORR1D2-int87015422	NonProperStrand	2	chr3	87016107	87016207	Simple_repeat	(TTTC)n	Simple_repeat	chr3(TTTC)n87016023	ProperStrand	2	2	-inf
chr15	100009967	100010067	protein_coding	Dip2b	intron	ENSMUSG00000023026	ProperStrand	60	chr19	5898196	5898286	protein_coding	Dpf2	utr3	ENSMUSG00000024826	NonProperStrand	1	1	-inf
chr1	93800305	93800373	LTR	MamGypLTR1a	Gypsy	chr1MamGypLTR1a93800156	ProperStrand	1	chr9	21733807	21733826	protein_coding	Ccdc159	exon	ENSMUSG00000006241	ProperStrand	32	1	-inf
chr10	82955288	82955351	protein_coding	Aldh1l2	exon	ENSMUSG00000020256	ProperStrand	30	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.8435
chr17	85120916	85121016	protein_coding	Lrpprc	intron	ENSMUSG00000024120	NonProperStrand	54	chr2	75683952	75684042	protein_coding	Agps	intron	ENSMUSG00000042410	NonProperStrand	122	3	-20.8009
chr7	122020304	122020332	DNA	Charlie10a	MER1_type	chr7Charlie10a122020230	NonProperStrand	2	chr7	122020606	122020697	DNA	RCHARR1	MER1_type	chr7RCHARR1122020411	NonProperStrand	16	1	-inf
chr11	69668102	69668257	protein_coding	Tnk1	utr3	ENSMUSG00000001583	ProperStrand	269	chr7	99482659	99483638	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-4.4933
chr11	60801563	60801971	LTR	ORR1D1	MaLR	chr11ORR1D160801649	NonProperStrand	1	chr17	39847736	39847770	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	154379532	154379550	protein_coding	Rgl1	intron	ENSMUSG00000026482	ProperStrand	12	chr12	86444455	86444542	protein_coding	Prox2	intron	ENSMUSG00000042320	ProperStrand	63	1	-15.2157
chr13	23739346	23739417	LTR	MTA_Mm	MaLR	chr13MTA_Mm23739238	NonProperStrand	65	chr15	86330630	86330709	SINE	B1_Mur4	Alu	chr15B1_Mur486330604	ProperStrand	1	1	-inf
chr1	13367333	13367359	SINE	ID_B1	B4	chr1ID_B113367261	NonProperStrand	1	chr19	47402519	47402592	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	ProperStrand	170	1	-inf
chr15	73703505	73703558	LTR	ORR1E	MaLR	chr15ORR1E73703304	NonProperStrand	1	chr6	3201509	3201552	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr8	87370087	87370177	protein_coding-noncoding	Calr	utr3	ENSMUSG00000003814	NonProperStrand	1	chr8	87370636	87370736	protein_coding	Calr	utr5	ENSMUSG00000003814	NonProperStrand	1	1	-inf
chr17	39846974	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	115706383	115706402	SINE	B3A	B2	chr8B3A115706304	NonProperStrand	1	1	-inf
chr6	3201430	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	75663652	75663680	Simple_repeat	(TTTTA)n	Simple_repeat	chr2(TTTTA)n75663637	ProperStrand	11	1	-6.1647
chr9	123461873	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr19	8888536	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	8	-7.2354
chr11	29480632	29482121	LINE	L1_Mus3	L1	chr11L1_Mus329480233	ProperStrand	1	chr17	39846453	39846488	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	138839519	138839564	LTR	RLTR24	ERV1	chr3RLTR24138839187	ProperStrand	2	chr3	138852961	138853061	Low_complexity	CT-rich	Low_complexity	chr3CT-rich138852921	ProperStrand	1	1	-inf
chr10	40833067	40833103	SINE	MIR	MIR	chr10MIR40833028	NonProperStrand	1	chr9	123461959	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39846410	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	102720173	102720206	LTR	ORR1A4	MaLR	chr9ORR1A4102719928	ProperStrand	5	1	-3.1907
chr1	147018750	147018849	LINE	L1Md_F2	L1	chr1L1Md_F2147015685	ProperStrand	2	chr1	147018966	147019056	LINE	L1Md_F2	L1	chr1L1Md_F2147018814	NonProperStrand	1	1	-inf
chr15	53252344	53252448	LTR	ORR1B1	MaLR	chr15ORR1B153252171	NonProperStrand	2	chr15	53254019	53254050	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n53253986	NonProperStrand	1	1	-inf
chr19	32507656	32507681	LTR	RMER6A	ERVK	chr19RMER6A32507430	NonProperStrand	1	chr19	32507775	32507867	Simple_repeat	(TC)n	Simple_repeat	chr19(TC)n32507788	ProperStrand	1	1	-inf
chr12	40466522	40466599	LINE	L1_Mus3	L1	chr12L1_Mus340464871	NonProperStrand	2	chr2	118600176	118600252	protein_coding	Phgr1	intron	ENSMUSG00000046804	ProperStrand	9	1	-inf
chr11	109011679	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	86110403	86110439	protein_coding	Med13	intron	ENSMUSG00000034297	ProperStrand	27	1	-7.6923
chr17	86210817	86210860	LINE	Lx6	L1	chr17Lx686210161	NonProperStrand	1	chr11	62604508	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	1	-inf
chr17	88056667	88056757	LTR	RMER16-int	ERVK	chr17RMER16-int88056597	NonProperStrand	2	chr17	88056522	88056622	SINE	B1_Mus1	Alu	chr17B1_Mus188056453	NonProperStrand	1	1	-inf
chr17	39847495	39847575	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	67449082	67449136	protein_coding	Impa2	exon	ENSMUSG00000024525	NonProperStrand	2	1	-5.4040
chr12	72664848	72664882	Other	RMER1A	Other	chr12RMER1A72664003	NonProperStrand	1	chr18	34865137	34865181	protein_coding	Gfra3	intron	ENSMUSG00000024366	NonProperStrand	18	1	-inf
chr7	74652587	74652687	LINE	L1MB7	L1	chr7L1MB774652353	ProperStrand	1	chr7	74653023	74653113	LINE	L1MB7	L1	chr7L1MB774653020	ProperStrand	1	1	-inf
chr8	91023558	91026678	LTR	ORR1E	MaLR	chr8ORR1E91025280	NonProperStrand	1	chr8	91022858	91022903	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n91021980	ProperStrand	1	1	-inf
chr13	112578633	112578656	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr5	75027075	75027205	protein_coding	Lnx1	intron	ENSMUSG00000029228	ProperStrand	20	1	-6.3568
chr2	94434826	94434926	LINE	L1MA9	L1	chr2L1MA994434655	NonProperStrand	1	chr2	94434931	94435021	SINE	PB1	Alu	chr2PB194434927	NonProperStrand	1	1	-inf
chr8	115360778	115360796	protein_coding	Cntnap4	intron	ENSMUSG00000031772	NonProperStrand	5	chr14	64955290	64955402	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	1	-15.2749
chr17	39846463	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	114716979	114717016	LTR	LTR33B	ERVL	chr8LTR33B114716965	NonProperStrand	1	1	-inf
chr12	15135784	15135885	LINE	L1Md_F2	L1	chr12L1Md_F215135719	ProperStrand	1	chr9	123462112	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	93995284	93995302	LINE	L1Md_T	L1	chr7L1Md_T93994338	ProperStrand	4	chr17	39846759	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr3	55677807	55677899	protein_coding	Nbea	intron	ENSMUSG00000027799	ProperStrand	40	chr4	132310239	132310270	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-10.5383
chr2	22744838	22744905	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr8	18933360	18933428	protein_coding	Xkr5	utr3	ENSMUSG00000039814	NonProperStrand	7	1	-11.2142
chr17	39847477	39847518	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	120665504	120665555	SINE	RSINE1	B4	chr8RSINE1120665456	NonProperStrand	1	1	-inf
chr3	68525682	68525708	LTR	MTEb	MaLR	chr3MTEb68525613	ProperStrand	1	chr14	33967652	33967774	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-inf
chr17	39846352	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	34333920	34333953	LTR	ORR1A4	MaLR	chr18ORR1A434333835	ProperStrand	1	1	-inf
chr11	115415717	115415786	LTR	RMER4A	ERVK	chr11RMER4A115415689	NonProperStrand	2	chr17	39847611	39847695	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr16	19820141	19820241	LINE	L1Md_T	L1	chr16L1Md_T19819731	NonProperStrand	1	chr5	14991230	14991320	LTR	MTD	MaLR	chr5MTD14991209	ProperStrand	1	1	-inf
chr15	81585749	81585778	protein_coding	Zc3h7b	intron	ENSMUSG00000022390	ProperStrand	45	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-9.7177
chr11	115994649	115994709	protein_coding	Mrpl38	intron	ENSMUSG00000020775	NonProperStrand	1	chr10	11169470	11169571	protein_coding	Epm2a	intron	ENSMUSG00000055493	ProperStrand	13	1	-inf
chr17	39846395	39846765	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	36231260	36231584	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	6	-5.4249
chr3	88487759	88487849	LTR	RMER6A	ERVK	chr3RMER6A88487301	ProperStrand	1	chr3	88488056	88488156	Low_complexity	GA-rich	Low_complexity	chr3GA-rich88488049	ProperStrand	2	1	-inf
chr16	23110755	23110828	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr15	71794346	71794366	protein_coding	Col22a1	intron	ENSMUSG00000079022	NonProperStrand	6	1	-14.6807
chr9	64986037	64986076	SINE	B3A	B2	chr9B3A64985979	NonProperStrand	1	chr13	35858221	35863239	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-inf
chr9	22367976	22368076	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	chrX	20650204	20650296	protein_coding	Spaca5	intron	ENSMUSG00000037167	ProperStrand	23	1	-12.3515
chr4	115126630	115126720	pseudogene	Gm12838	.	ENSMUSG00000080142	ProperStrand	1	chr4	115126342	115126442	pseudogene	Cyp4a30b-ps	.	ENSMUSG00000084346	NonProperStrand	2	1	-inf
chr19	49685740	49685770	LINE	L1Md_F2	L1	chr19L1Md_F249685627	NonProperStrand	3	chr17	39846930	39846950	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr16	66246448	66246548	LTR	IAPEz-int	ERVK	chr16IAPEz-int66245782	NonProperStrand	1	chr2	131918894	131918984	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-inf
chr17	39843411	39843500	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	58251605	58251624	protein_coding	Tsc22d2	intron	ENSMUSG00000027806	NonProperStrand	5	1	-7.4674
chr2	167065280	167065358	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr13	44869601	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.9244
chr3	41570696	41570775	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr4	86478548	86478617	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-12.2209
chr10	58454070	58454098	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	chr5	110428138	110428228	protein_coding	Zfp932	intron	ENSMUSG00000066613	NonProperStrand	61	1	-10.0846
chr17	4082170	4082260	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr1	132595486	132595586	protein_coding	Pfkfb2	intron	ENSMUSG00000026409	ProperStrand	26	1	-9.3443
chr9	123461965	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	22242482	22242502	protein_coding	Rp9	intron	ENSMUSG00000032239	ProperStrand	12	1	-4.0248
chr14	21166192	21166292	protein_coding	Ecd	intron	ENSMUSG00000021810	ProperStrand	1	chr14	21217036	21217126	protein_coding	Ttc18	intron	ENSMUSG00000039543	NonProperStrand	24	1	-inf
chr18	80794199	80794264	LINE	L1MD2	L1	chr18L1MD280794207	NonProperStrand	1	chr17	39847736	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	64334903	64334923	LINE	Lx6	L1	chr15Lx664334905	ProperStrand	1	chr4	44931329	44931433	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-inf
chr13	66437927	66438067	SINE	B1_Mm	Alu	chr13B1_Mm66437949	ProperStrand	1	chr11	96447469	96447485	protein_coding	Skap1	intron	ENSMUSG00000057058	ProperStrand	10	1	-inf
chr2	152229763	152229863	LTR	ORR1A4	MaLR	chr2ORR1A4152229557	ProperStrand	2	chr2	152229453	152229543	SINE	B2_Mm1t	B2	chr2B2_Mm1t152229372	ProperStrand	1	1	-inf
chr16	23111310	23111432	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr13	113609373	113609410	protein_coding	Ppap2a	intron	ENSMUSG00000021759	NonProperStrand	111	1	-8.6773
chr12	78350926	78350993	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr19	10695925	10695968	protein_coding	Ddb1	intron	ENSMUSG00000024740	ProperStrand	19	1	-8.1984
chr8	69768969	69769025	LTR	RMER13A	ERVK	chr8RMER13A69768474	NonProperStrand	4	chr5	66576569	66576618	SINE	B2_Mm1t	B2	chr5B2_Mm1t66576551	NonProperStrand	2	1	-20.9262
chr6	3201454	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	3910350	3910404	SINE	ID2	ID	chr4ID23910364	NonProperStrand	1	1	-inf
chrX	128700623	128700639	LTR	ORR1A2	MaLR	chrXORR1A2128700541	ProperStrand	1	chr7	134851943	134852036	protein_coding	Bcl7c	utr5	ENSMUSG00000030814	NonProperStrand	23	1	-inf
chr8	111768568	111768618	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	NonProperStrand	118	chr5	36336429	36336533	protein_coding	Afap1	intron	ENSMUSG00000029094	NonProperStrand	22	1	-12.6980
chr17	32263877	32263893	lincRNA	Gm17276	intron	ENSMUSG00000090984	ProperStrand	1	chr11	20235299	20235325	protein_coding	Gm12033	exon	ENSMUSG00000078965	ProperStrand	1	1	-inf
chr17	22735185	22735285	LINE	L1_Mur3	L1	chr17L1_Mur322734381	NonProperStrand	2	chr17	22735325	22735415	SINE	B1_Mur4	Alu	chr17B1_Mur422735351	NonProperStrand	1	1	-inf
chr5	121208478	121208564	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr13	97190563	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1238
chr17	4082091	4082233	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr1	32378492	32378631	protein_coding	Khdrbs2	intron	ENSMUSG00000026058	NonProperStrand	21	10	-21.1553
chr4	19778574	19778674	LINE	L1_Mur3	L1	chr4L1_Mur319778447	ProperStrand	1	chr4	19938751	19938841	protein_coding	Ttpa	intron	ENSMUSG00000073988	ProperStrand	1	1	-inf
chr17	26056799	26056835	lincRNA	Gm16278	intron	ENSMUSG00000084862	NonProperStrand	8	chr17	26056323	26056440	protein_coding	Rab40c	exon	ENSMUSG00000025730	ProperStrand	53	3	-23.3397
chr15	47539994	47540115	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr1	185883047	185883065	protein_coding	Dusp10	intron	ENSMUSG00000039384	ProperStrand	3	1	-16.5459
chr6	122735434	122735524	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr5	91967243	91967343	protein_coding	Parm1	intron	ENSMUSG00000034981	ProperStrand	7	1	-13.4340
chr1	122357197	122357225	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-4.2130
chr11	46529474	46529564	LINE	Lx	L1	chr11Lx46526965	NonProperStrand	1	chr11	46529633	46529733	LTR	RLTRETN_Mm	ERVK	chr11RLTRETN_Mm46529538	NonProperStrand	1	1	-inf
chr17	71000818	71000855	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr4	111418458	111418561	protein_coding	Spata6	intron	ENSMUSG00000034401	ProperStrand	15	1	-11.2564
chr1	84782896	84786113	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr1	84839342	84839442	protein_coding	Fbxo36	intron	ENSMUSG00000073633	NonProperStrand	31	2	-18.9684
chr9	9459574	9459674	LINE	L1_Mus2	L1	chr9L1_Mus29458394	NonProperStrand	1	chr9	9459746	9459836	LTR	RLTR13D1	ERVK	chr9RLTR13D19459671	NonProperStrand	1	1	-inf
chr14	21852765	21852855	protein_coding	Vcl	utr3	ENSMUSG00000021823	ProperStrand	63	chr14	21852859	21852959	protein_coding	Ap3m1	utr3	ENSMUSG00000021824	NonProperStrand	6	1	-16.7531
chr11	26247950	26248050	DNA	MMAR1	Mariner	chr11MMAR126247906	NonProperStrand	1	chr11	26247700	26247790	LINE	L1_Mus4	L1	chr11L1_Mus426247042	ProperStrand	1	1	-inf
chr12	11020634	11020734	LINE	L1Md_F	L1	chr12L1Md_F11020552	ProperStrand	1	chr12	11020442	11020532	SINE	B3	B2	chr12B311020324	ProperStrand	1	1	-inf
chr5	146261044	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	63178679	63178748	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	1	-4.6325
chr1	191015458	191015502	SINE	RSINE1	B4	chr1RSINE1191015413	NonProperStrand	1	chr6	122728681	122728735	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-inf
chr8	70907633	70907751	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	NonProperStrand	45	chr7	16478585	16478620	protein_coding	Crxos1	intron	ENSMUSG00000074365	NonProperStrand	1	1	-inf
chr13	112578217	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr1	51210766	51210782	protein_coding	Tmeff2	intron	ENSMUSG00000026109	ProperStrand	16	1	-6.8081
chr5	42173414	42173514	LTR	RLTR20C	ERVK	chr5RLTR20C42173423	NonProperStrand	1	chr5	42173300	42173390	LTR	RLTR26	ERVK	chr5RLTR2642172756	NonProperStrand	1	1	-inf
chr13	16345647	16345737	LINE	L1Md_F2	L1	chr13L1Md_F216345412	ProperStrand	1	chr13	16345893	16345993	LINE	L1Md_F2	L1	chr13L1Md_F216345712	ProperStrand	1	1	-inf
chr1	106777313	106777400	protein_coding	Cdh20	intron	ENSMUSG00000050840	NonProperStrand	61	chr6	83476930	83476952	protein_coding	Actg2	intron	ENSMUSG00000059430	ProperStrand	6	1	-16.7937
chr1	118988132	118988201	LTR	RLTR10	ERVK	chr1RLTR10118988054	NonProperStrand	6	chr9	118674951	118675003	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.6975
chr11	101298334	101298434	SINE	ID_B1	B4	chr11ID_B1101298309	ProperStrand	1	chr4	141321845	141322107	protein_coding	Dnajc16	intron	ENSMUSG00000040697	NonProperStrand	24	1	-inf
chr19	5799270	5799325	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr17	32139196	32139233	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	2	-5.7859
chr2	129206103	129206174	LTR	RLTR18	ERVK	chr2RLTR18129205595	ProperStrand	2	chr16	20663286	20663363	protein_coding	Psmd2	utr3	ENSMUSG00000006998	ProperStrand	34	1	-19.8869
chr6	18621236	18621264	LINE	L1Md_F2	L1	chr6L1Md_F218621203	ProperStrand	1	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr19	9883937	9884455	LINE	Lx3A	L1	chr19Lx3A9883167	NonProperStrand	10	chr19	9885540	9885749	LTR	RMER17B	ERVK	chr19RMER17B9884889	ProperStrand	8	4	-23.0413
chr7	111082222	111082312	LINE	L1Md_F2	L1	chr7L1Md_F2111082000	NonProperStrand	2	chr7	111082126	111082226	LINE	L1Md_F2	L1	chr7L1Md_F2111082000	ProperStrand	2	2	-inf
chr7	112888971	112889031	protein_coding	Ilk	intron	ENSMUSG00000030890	ProperStrand	16	chr13	44869596	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.1067
chr13	58247216	58247268	LTR	MMERVK10C-int	ERVK	chr13MMERVK10C-int58245178	ProperStrand	6	chr4	45352246	45352308	protein_coding	Exosc3	intron	ENSMUSG00000028322	NonProperStrand	4	1	-inf
chr11	109011744	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	49127037	49127103	Low_complexity	T-rich	Low_complexity	chr13T-rich49127040	NonProperStrand	2	2	-inf
chr7	30460534	30460614	LINE	L1M5	L1	chr7L1M530460552	NonProperStrand	2	chr7	30460303	30460375	LTR	RMER19B	ERVK	chr7RMER19B30459474	ProperStrand	2	2	-inf
chr5	121205007	121205091	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr4	5806145	5806205	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	1	-8.0673
chr5	135382401	135382464	protein_coding	Wbscr28	intron	ENSMUSG00000040576	ProperStrand	9	chr2	26462604	26462657	protein_coding	Gm20532	intron	ENSMUSG00000092356	ProperStrand	19	1	-18.0438
chr13	87468069	87468169	LINE	L1VL1	L1	chr13L1VL187468012	ProperStrand	1	chr13	87467890	87467980	Simple_repeat	(TA)n	Simple_repeat	chr13(TA)n87467878	ProperStrand	1	1	-inf
chr18	35557099	35557230	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.0724
chr3	41581234	41588995	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int41587093	ProperStrand	34	chr3	41555736	41581201	protein_coding	D3Ertd751e	intron	ENSMUSG00000025766	ProperStrand	46	5	-22.4670
chr17	39847719	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	114110034	114112493	LTR	MT2_Mm	ERVL	chr2MT2_Mm114109867	ProperStrand	1	1	-inf
chr1	175888831	175888921	LINE	L1Md_F2	L1	chr1L1Md_F2175887331	ProperStrand	2	chr1	175888929	175889029	LINE	L1Md_F2	L1	chr1L1Md_F2175888930	ProperStrand	1	1	-inf
chr11	78530146	78530202	DNA	Charlie18a	MER1_type	chr11Charlie18a78530021	NonProperStrand	3	chr17	39847552	39847605	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr13	9834304	9834441	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	1	-11.0469
chr10	122076348	122076448	LTR	ORR1D2	MaLR	chr10ORR1D2122076238	ProperStrand	1	chr12	67661130	67661220	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr1	89854938	89855080	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	chr11	59076318	59076334	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	1	-12.0241
chr7	28564276	28564366	LINE	L1Md_F3	L1	chr7L1Md_F328564296	NonProperStrand	5	chr7	28564180	28564280	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int28561999	NonProperStrand	9	3	-inf
chr11	69824119	69824153	protein_coding	Acadvl	intron	ENSMUSG00000018574	ProperStrand	5	chr11	69823182	69823242	protein_coding	Dvl2	utr3	ENSMUSG00000020888	NonProperStrand	1	1	-inf
chr8	64998608	64998626	LINE	L1_Mur3	L1	chr8L1_Mur364998290	ProperStrand	6	chr1	7096254	7096363	protein_coding	Pcmtd1	intron	ENSMUSG00000051285	ProperStrand	119	2	-inf
chr11	60797415	60797482	LTR	MTD	MaLR	chr11MTD60797286	ProperStrand	2	chr14	34342158	34343610	SINE	B4	B4	chr14B434341995	NonProperStrand	1	1	-inf
chrX	52478599	52478699	LINE	L1_Mus1	L1	chrXL1_Mus152478202	NonProperStrand	1	chrX	52480677	52480700	protein_coding	Slxl1	intron	ENSMUSG00000067909	NonProperStrand	19	1	-inf
chr4	37879877	37879977	LINE	Lx4B	L1	chr4Lx4B37879478	ProperStrand	1	chr4	37880151	37880240	LTR	RLTR26	ERVK	chr4RLTR2637880115	NonProperStrand	1	1	-inf
mmu-miR-292a-3p	0	24	miRNA	mmu-miR-292a-3p	.	mmu-miR-292a-3p	ProperStrand	6	chr1	180589433	180589491	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	1	-14.6646
chr7	19159225	19159284	LINE	L1Md_F2	L1	chr7L1Md_F219155947	ProperStrand	6	chr5	120620031	120620113	protein_coding	Rbm19	intron	ENSMUSG00000029594	ProperStrand	47	1	-17.4028
chr6	142763115	142763201	processed_transcript	Gm7457	.	ENSMUSG00000072683	ProperStrand	18	chr5	17776751	17776779	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-12.5488
chr17	27877405	27879315	SINE	B2_Mm2	B2	chr17B2_Mm227879021	NonProperStrand	3	chr17	27876946	27877395	antisense	Gm15458	.	ENSMUSG00000086485	ProperStrand	11	3	-inf
chr6	120830403	120830503	protein_coding	Bcl2l13	intron	ENSMUSG00000009112	NonProperStrand	37	chr19	37223010	37223100	protein_coding	Cpeb3	intron	ENSMUSG00000039652	NonProperStrand	28	1	-14.5434
chr3	95132648	95132745	protein_coding	Setdb1	intron	ENSMUSG00000015697	ProperStrand	3	chr11	72444736	72444790	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	1	-17.2103
chr2	61724415	61724515	LINE	Lx7	L1	chr2Lx761724441	NonProperStrand	1	chr2	61724327	61724417	LTR	MTB	MaLR	chr2MTB61724041	NonProperStrand	1	1	-inf
chr5	146261018	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	118674949	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	9	-8.3332
chr16	23157091	23157184	protein_coding	Adipoq	intron	ENSMUSG00000022878	ProperStrand	2	chr14	64835944	64835974	protein_coding	Msra	intron	ENSMUSG00000054733	ProperStrand	122	1	-17.9330
chr2	22744845	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr13	23551285	23551342	protein_coding	Btn1a1	intron	ENSMUSG00000000706	ProperStrand	29	1	-8.2643
chr17	39847444	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	35234903	35234925	snRNA	ENSMUSG00000084581_U4	.	ENSMUSG00000084581	ProperStrand	1	1	-inf
chr10	115492374	115492392	protein_coding	Ptprr	intron	ENSMUSG00000020151	ProperStrand	5	chr8	13936482	13936605	protein_coding	Fbxo25	intron	ENSMUSG00000038365	ProperStrand	46	1	-17.7828
chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	84957335	84957417	LTR	MTD	MaLR	chr18MTD84957016	NonProperStrand	1	1	-inf
chr17	39847347	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	85279003	85279033	LTR	RLTR10D	ERVK	chr8RLTR10D85278847	ProperStrand	1	1	-inf
chr11	70147187	70147277	LTR	LTRIS_Mus	ERV1	chr11LTRIS_Mus70147090	NonProperStrand	1	chr11	70146934	70147034	LTR	MTD	MaLR	chr11MTD70146788	NonProperStrand	1	1	-inf
chr1	113899061	113899115	Other	RMER1B	Other	chr1RMER1B113899060	ProperStrand	1	chr9	65973116	65973178	protein_coding	Snx1	intron	ENSMUSG00000032382	NonProperStrand	10	1	-inf
chrX	9957243	9960023	LINE	Lx2	L1	chrXLx29958176	NonProperStrand	1	chr19	46782088	46782160	protein_coding	As3mt	intron	ENSMUSG00000003559	ProperStrand	85	1	-inf
chr5	140218910	140219012	LTR	MTA_Mm	MaLR	chr5MTA_Mm140218845	ProperStrand	2	chr5	140208539	140208570	protein_coding	Micall2	intron	ENSMUSG00000036718	ProperStrand	59	1	-20.1703
chr7	65363725	65363815	LINE	Lx5	L1	chr7Lx565363722	ProperStrand	1	chr7	65363624	65363724	LTR	RLTR11A2	ERVK	chr7RLTR11A265363302	ProperStrand	1	1	-inf
chr4	117474126	117474216	SINE	B1_Mus1	Alu	chr4B1_Mus1117474145	ProperStrand	1	chr4	117474051	117474151	SINE	B3	B2	chr4B3117473966	NonProperStrand	1	1	-inf
chr9	73014797	73014887	LINE	L1_Mus3	L1	chr9L1_Mus373014631	NonProperStrand	3	chr9	73014902	73015002	LTR	ETnERV2-int	ERVK	chr9ETnERV2-int73014864	ProperStrand	3	3	-inf
chr6	113272067	113272167	protein_coding-noncoding	Brpf1	utr5	ENSMUSG00000001632	ProperStrand	3	chr6	113271975	113272065	protein_coding	Brpf1	exon	ENSMUSG00000001632	ProperStrand	30	1	-19.4498
chr12	21610424	21610524	LTR	IAPEz-int	ERVK	chr12IAPEz-int21610449	ProperStrand	4	chr12	21610329	21610419	LTR	IAPLTR2a	ERVK	chr12IAPLTR2a21610038	ProperStrand	4	4	-inf
chr10	9900617	9900633	Low_complexity	AT_rich	Low_complexity	chr10AT_rich9900615	ProperStrand	9	chr7	123338516	123338608	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	1	-13.6417
chr17	39847656	39847756	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	55418815	55418834	LTR	MTD	MaLR	chr4MTD55418670	NonProperStrand	1	1	-inf
chr3	101694158	101694258	protein_coding	Slc22a15	intron	ENSMUSG00000033147	NonProperStrand	2	chr3	101623977	101624067	protein_coding	Mab21l3	intron	ENSMUSG00000044313	NonProperStrand	3	1	-20.8297
chr17	39846204	39848192	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	146260992	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	263	-inf
chr2	22744855	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	63893542	63893635	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-6.3148
chr4	51267750	51267840	LINE	L1_Mur3	L1	chr4L1_Mur351267277	ProperStrand	1	chr4	51268060	51268160	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n51268063	ProperStrand	1	1	-inf
chr1	106192039	106192103	LINE	L1_Mus2	L1	chr1L1_Mus2106191984	NonProperStrand	5	chr1	106190759	106190825	LTR	IAPEz-int	ERVK	chr1IAPEz-int106189774	NonProperStrand	1	1	-inf
chr17	39847207	39847285	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	90395180	90395204	protein_coding	Ptprj	intron	ENSMUSG00000025314	NonProperStrand	1	1	-inf
chr17	39846759	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	92874629	92874707	LTR	RMER15-int	ERVL	chr7RMER15-int92874514	ProperStrand	2	2	-inf
chr11	8580195	8580216	SINE	FAM	Alu	chr11FAM8580200	ProperStrand	1	chr9	123462082	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	49236497	49236562	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.4081
chr4	116048435	116048451	protein_coding	Mast2	intron	ENSMUSG00000003810	NonProperStrand	30	chr16	56102034	56102156	protein_coding	Senp7	intron	ENSMUSG00000052917	ProperStrand	21	1	-15.5525
chr8	127605993	127606057	protein_coding	Disc1	intron	ENSMUSG00000043051	ProperStrand	29	chr7	99545214	99545288	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-11.0567
chr17	4082115	4082195	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr5	68222230	68222258	protein_coding	Atp8a1	intron	ENSMUSG00000037685	NonProperStrand	4	1	-16.5712
chr17	39847990	39848006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	49809429	49809456	LTR	MLT1A0	MaLR	chr18MLT1A049809419	NonProperStrand	1	1	-inf
chr4	129945940	129946030	protein_coding	Serinc2	intron	ENSMUSG00000023232	NonProperStrand	2	chr4	129771231	129771331	protein_coding	Col16a1	intron	ENSMUSG00000040690	NonProperStrand	18	1	-21.0482
chr10	115210276	115212706	LTR	MT2A	ERVL	chr10MT2A115209942	NonProperStrand	1	chr12	105031251	105031277	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	1	-inf
chr8	31149862	31149969	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr17	39848070	39848326	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	18	-inf
chr17	46258170	46258186	protein_coding	Mrps18a	intron	ENSMUSG00000023967	NonProperStrand	1	chr13	97190548	97190574	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr3	22188423	22189814	DNA	URR1A	MER1_type	chr3URR1A22188441	NonProperStrand	1	chr17	39847364	39847392	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	6310827	6310898	SINE	B1_Mus2	Alu	chr11B1_Mus26310760	NonProperStrand	1	chr11	6313749	6313772	SINE	ID_B1	B4	chr11ID_B16313663	ProperStrand	1	1	-inf
chr18	77044615	77044645	LINE	L1M4	L1	chr18L1M477044555	ProperStrand	1	chr17	39843723	39843807	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr8	122406283	122406323	SINE	B1_Mus2	Alu	chr8B1_Mus2122406183	ProperStrand	1	chr1	59690517	59690548	protein_coding	Gm973	intron	ENSMUSG00000047361	ProperStrand	23	1	-inf
chr5	140167850	140167908	DNA	URR1A	MER1_type	chr5URR1A140167828	NonProperStrand	1	chr5	140167488	140167536	SINE	B4A	B4	chr5B4A140167501	ProperStrand	2	1	-inf
chr10	122566286	122566376	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr4	68446893	68446993	protein_coding	Dbc1	intron	ENSMUSG00000028351	NonProperStrand	7	1	-16.9628
chr10	4357016	4357100	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr7	142041134	142041177	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-7.8415
chr15	27616354	27616463	LINE	L1MB3	L1	chr15L1MB327616357	ProperStrand	2	chr15	35454971	35455018	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	2	-inf
chr5	150639632	150639696	LTR	ORR1B1	MaLR	chr5ORR1B1150639395	ProperStrand	1	chr2	76723660	76723745	protein_coding	Ttn	exon	ENSMUSG00000051747	NonProperStrand	37	1	-inf
chr19	40574290	40574390	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	chr19	58847580	58847670	protein_coding	Pnliprp2	intron	ENSMUSG00000025091	NonProperStrand	24	1	-11.0641
chr17	39846847	39846882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	120111217	120112785	SINE	ID4_	ID	chr10ID4_120112712	NonProperStrand	3	1	-4.3017
chr11	3392962	3409070	protein_coding	Pla2g3	intron	ENSMUSG00000034579	NonProperStrand	6	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.6975
chr4	138882065	138882155	LTR	RLTR20C	ERVK	chr4RLTR20C138882065	ProperStrand	7	chr4	138881907	138882007	SINE	B1_Mus1	Alu	chr4B1_Mus1138881917	ProperStrand	7	7	-inf
chr10	84721190	84721290	LINE	L1Md_F2	L1	chr10L1Md_F284720523	ProperStrand	1	chr10	84722907	84722947	Low_complexity	CT-rich	Low_complexity	chr10CT-rich84722911	ProperStrand	2	1	-inf
chr10	128521654	128521882	LINE	L1MA4	L1	chr10L1MA4128521769	ProperStrand	1	chr17	39848391	39848472	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr3	86140647	86140687	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	chr2	151559590	151560660	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	58	1	-11.1883
chr8	52983751	52983851	LINE	L1_Mus1	L1	chr8L1_Mus152983713	NonProperStrand	1	chr8	52984098	52984188	LTR	MTD-int	MaLR	chr8MTD-int52983883	ProperStrand	1	1	-inf
chr2	5379275	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr16	23110838	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-4.4248
chr5	31141280	31141320	protein_coding	Mapre3	intron	ENSMUSG00000029166	NonProperStrand	36	chr5	122433080	122433167	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-11.4555
chr12	19053129	19053205	LTR	MMERVK10C-int	ERVK	chr12MMERVK10C-int19052930	ProperStrand	1	chr17	39847428	39847457	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	65250688	65250727	LINE	Lx2B	L1	chr13Lx2B65250169	ProperStrand	2	chr9	123462101	123462165	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	69683949	69683985	SINE	B3A	B2	chr2B3A69683897	ProperStrand	1	chr15	58149667	58149697	lincRNA	Gm15943	intron	ENSMUSG00000086801	ProperStrand	24	1	-inf
chrX	150985217	150985255	LINE	L1_Mus3	L1	chrXL1_Mus3150983431	NonProperStrand	5	chr17	39846461	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr9	63990961	63991003	protein_coding	Zwilch	intron	ENSMUSG00000032400	ProperStrand	48	chr7	19696987	19697019	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	2	-18.6960
chr15	80918084	80918513	protein_coding	Mkl1	intron	ENSMUSG00000042292	ProperStrand	25	chr6	94169579	94169627	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-8.0354
chr9	64143478	64143553	protein_coding	Tipin	intron	ENSMUSG00000032397	NonProperStrand	11	chr15	73667208	73667275	protein_coding	Gm6569	intron	ENSMUSG00000086361	ProperStrand	2	1	-20.5081
chr2	22744888	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	63511087	63511106	protein_coding	Tnfsf8	intron	ENSMUSG00000028362	ProperStrand	7	1	-11.2142
chr15	80080973	80081623	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr8	122300997	122301054	protein_coding	4632415K11Rik	intron	ENSMUSG00000034105	NonProperStrand	41	1	-8.8522
chr9	56982324	56982424	protein_coding-noncoding	Man2c1	utr5	ENSMUSG00000032295	ProperStrand	2	chr9	56980680	56980770	protein_coding	Man2c1	intron	ENSMUSG00000032295	ProperStrand	2	2	-inf
chr17	39847863	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	33234130	33234148	protein_coding	Clvs2	intron	ENSMUSG00000019785	NonProperStrand	1	1	-inf
chr2	156223542	156223580	SINE	B2_Mm1t	B2	chr2B2_Mm1t156223503	ProperStrand	1	chr5	17776749	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-inf
chr12	78350927	78350993	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	11244015	11244091	protein_coding	Gspt1	intron	ENSMUSG00000062203	ProperStrand	60	1	-5.8960
chr18	25468354	25468483	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.3500
chr3	116591935	116591955	protein_coding	Frrs1	intron	ENSMUSG00000033386	NonProperStrand	19	chr11	97231985	97235071	protein_coding	Socs7	intron	ENSMUSG00000038485	NonProperStrand	32	1	-15.6187
chr14	45653154	45653254	LINE	L1M4	L1	chr14L1M445653130	NonProperStrand	2	chr14	45651727	45651817	LINE	L1Md_A	L1	chr14L1Md_A45646721	ProperStrand	10	1	-20.4467
chr3	108386677	108386699	LTR	ORR1D1	MaLR	chr3ORR1D1108386557	ProperStrand	7	chr3	108385099	108385156	protein_coding	Taf13	utr3	ENSMUSG00000048100	ProperStrand	20	1	-18.9516
chr10	25279604	25279720	LTR	RLTR31_Mm	ERVK	chr10RLTR31_Mm25279387	NonProperStrand	2	chr17	39846838	39846855	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr3	99285586	99285614	LINE	Lx2	L1	chr3Lx299284989	ProperStrand	1	chr3	99298374	99298457	LINE	Lx	L1	chr3Lx99298206	NonProperStrand	1	1	-inf
chr8	58969979	58970079	LTR	RMER12	ERVK	chr8RMER1258969960	ProperStrand	1	chr8	58969793	58969883	SINE	B1_Mur4	Alu	chr8B1_Mur458969813	NonProperStrand	1	1	-inf
chr4	155522871	155522961	LTR	RMER16-int	ERVK	chr4RMER16-int155522816	ProperStrand	1	chr4	155523007	155523105	LTR	RMER16-int	ERVK	chr4RMER16-int155523026	ProperStrand	3	1	-inf
chr3	62495512	62496789	LINE	L1Md_F2	L1	chr3L1Md_F262495960	ProperStrand	2	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-15.3042
chr14	77687571	77687670	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	chr17	27751627	27751644	protein_coding	Nudt3	intron	ENSMUSG00000024213	NonProperStrand	4	1	-15.0097
chr2	161004431	161004531	LINE	L2a	L2	chr2L2a161004263	ProperStrand	4	chr2	161004552	161004642	SINE	B1_Mur3	Alu	chr2B1_Mur3161004556	ProperStrand	3	3	-inf
chr9	37489892	37490023	LINE	L1MA4	L1	chr9L1MA437489905	NonProperStrand	17	chr9	37489729	37489885	LTR	MTA_Mm	MaLR	chr9MTA_Mm37489509	NonProperStrand	10	8	-inf
chr3	27866874	27866938	protein_coding	Pld1	intron	ENSMUSG00000027695	ProperStrand	13	chr1	189126291	189126310	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-16.1431
chr13	29967672	29967693	LINE	Lx7	L1	chr13Lx729967532	ProperStrand	7	chr1	162722737	162722832	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	1	-14.3728
chr12	78351068	78351122	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr18	24795001	24795087	protein_coding	Elp2	intron	ENSMUSG00000024271	ProperStrand	44	1	-6.5090
chr7	110548426	110548545	LINE	L1_Mur2	L1	chr7L1_Mur2110547963	NonProperStrand	2	chr17	39847767	39847803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39846721	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	28268654	28268693	SINE	B1_Mm	Alu	chr7B1_Mm28268545	NonProperStrand	1	1	-inf
chr1	191541091	191541181	SINE	B1_Mur2	Alu	chr1B1_Mur2191541090	NonProperStrand	1	chr1	191540982	191541082	SINE	PB1D10	Alu	chr1PB1D10191540971	NonProperStrand	1	1	-inf
chr8	103128208	103128298	LTR	RLTR11A2	ERVK	chr8RLTR11A2103127785	NonProperStrand	1	chr8	103128487	103128587	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n103128503	ProperStrand	1	1	-inf
chr19	46803085	46803185	protein_coding	As3mt	intron	ENSMUSG00000003559	ProperStrand	85	chr16	87486490	87486654	protein_coding	Cct8	intron	ENSMUSG00000025613	ProperStrand	46	1	-11.8578
chr10	40258574	40258663	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr6	84395215	84395236	LINE	L3	CR1	chr6L384395216	ProperStrand	1	1	-inf
chr2	28670174	28670274	DNA	MER3	MER1_type	chr2MER328670123	ProperStrand	2	chr2	28670036	28670126	SINE	ID_B1	B4	chr2ID_B128669957	ProperStrand	2	2	-inf
chr18	24803684	24803736	LINE	L1_Mur3	L1	chr18L1_Mur324803475	NonProperStrand	7	chr10	42856750	42856789	protein_coding	Sobp	intron	ENSMUSG00000038248	ProperStrand	10	1	-20.7396
chr14	50800992	50801062	LINE	L1VL4	L1	chr14L1VL450799802	NonProperStrand	15	chr14	57953157	57953237	protein_coding	Cryl1	intron	ENSMUSG00000021947	ProperStrand	31	2	-inf
chr12	30897239	30897302	protein_coding	Sntg2	intron	ENSMUSG00000020672	ProperStrand	22	chr2	5379266	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.5200
chr14	94868519	94868619	LINE	Lx2B	L1	chr14Lx2B94868446	NonProperStrand	1	chr14	94868358	94868448	LTR	MTC-int	MaLR	chr14MTC-int94867403	NonProperStrand	1	1	-inf
chr6	3201474	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	118794858	118794875	SINE	B1_Mur4	Alu	chr2B1_Mur4118794767	ProperStrand	1	1	-inf
chr2	26919668	26919730	protein_coding	Tmem8c	intron	ENSMUSG00000009214	NonProperStrand	8	chr4	151828997	151829069	protein_coding	Kcnab2	utr5	ENSMUSG00000028931	ProperStrand	216	1	-13.5951
chr17	39847382	39847411	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	103766831	103768462	Other	RMER1C	Other	chr2RMER1C103768358	ProperStrand	2	1	-5.4040
chr4	103140119	103140209	lincRNA	Gm12718	intron	ENSMUSG00000086136	ProperStrand	37	chr13	44869604	44869703	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.4298
chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	127090456	127090523	LTR	RMER4A	ERVK	chr2RMER4A127090091	NonProperStrand	2	1	-5.4040
chr12	67661130	67667998	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr7	103550499	103550873	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	3	-inf
chr8	95760198	95760516	DNA	URR1B	MER1_type	chr8URR1B95760078	NonProperStrand	5	chr17	39846658	39846713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr11	97781637	97781705	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr8	126944846	126944895	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-12.5057
chr1	131573833	131573872	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	chr2	41344451	41344468	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-8.2685
chr13	51148526	51148557	LTR	MER34A1	ERV1	chr13MER34A151148424	ProperStrand	1	chr13	51148671	51148729	LTR	RLTR42-int	ERVK	chr13RLTR42-int51148644	ProperStrand	1	1	-inf
chr4	141546693	141546711	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	chr14	3823802	3823848	protein_coding	Gm3002	intron	ENSMUSG00000079399	ProperStrand	51	1	-11.4054
chr13	11224363	11224463	LTR	MYSERV-int	ERVK	chr13MYSERV-int11223127	NonProperStrand	1	chr13	11224467	11224557	LTR	RMER4A	ERVK	chr13RMER4A11224477	NonProperStrand	1	1	-inf
chr7	135071445	135071524	protein_coding	Prss8	intron	ENSMUSG00000030800	NonProperStrand	2	chr11	97674606	97674829	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	1	-17.9364
chr6	72764696	72764786	SINE	B1_Mur2	Alu	chr6B1_Mur272764662	ProperStrand	1	chr6	72735053	72735095	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	1	-inf
chr8	11765348	11765456	protein_coding	Arhgef7	intron	ENSMUSG00000031511	ProperStrand	147	chr9	110281288	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-5.7924
chr19	3456189	3456230	protein_coding	Ppp6r3	utr3	ENSMUSG00000024908	ProperStrand	213	chr19	10610729	10610812	protein_coding	Cpsf7	intron	ENSMUSG00000034820	ProperStrand	82	1	-8.8563
chr2	164473695	164473711	LINE	L1Md_F3	L1	chr2L1Md_F3164473666	NonProperStrand	1	chr17	39847188	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39847332	39847380	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	22466152	22466207	LTR	MuLV-int	ERV1	chr17MuLV-int22466160	ProperStrand	1	1	-inf
chr16	33047657	33047693	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr15	12347852	12347935	protein_coding	Pdzd2	intron	ENSMUSG00000022197	NonProperStrand	64	1	-13.5871
chr11	88705273	88705335	protein_coding	Akap1	intron	ENSMUSG00000018428	ProperStrand	140	chr19	9005781	9005832	protein_coding	Eml3	intron	ENSMUSG00000071647	ProperStrand	68	1	-10.0699
chr13	95331576	95331654	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	55	chr5	129607702	129607765	protein_coding	Gpr133	intron	ENSMUSG00000044017	ProperStrand	9	1	-16.0973
chr2	169007778	169007869	LTR	MTD	MaLR	chr2MTD169007598	NonProperStrand	8	chr9	123461902	123461955	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr8	69768198	69768288	LINE	Lx4B	L1	chr8Lx4B69767614	NonProperStrand	1	chr8	69768452	69768552	LTR	RMER13A	ERVK	chr8RMER13A69768474	ProperStrand	1	1	-inf
chr17	39847701	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	54954055	54954182	SINE	B1F	Alu	chr4B1F54954032	ProperStrand	1	1	-inf
chr4	118240568	118240630	protein_coding	Wdr65	intron	ENSMUSG00000028730	ProperStrand	288	chr5	118699869	118699966	protein_coding	2410131K14Rik	intron	ENSMUSG00000032840	ProperStrand	127	1	-7.3847
chr10	22722550	22722597	LTR	ORR1D2	MaLR	chr10ORR1D222722407	NonProperStrand	2	chr10	22724559	22724596	Simple_repeat	(CATA)n	Simple_repeat	chr10(CATA)n22724547	NonProperStrand	1	1	-inf
chr4	82432199	82432244	LINE	L1Md_A	L1	chr4L1Md_A82432044	ProperStrand	4	chr4	82441043	82441112	LINE	L1_Mus1	L1	chr4L1_Mus182440959	NonProperStrand	1	1	-inf
chr17	39847187	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	14446924	14446943	protein_coding	Smoc2	intron	ENSMUSG00000023886	NonProperStrand	5	1	-4.3348
chr8	69312608	69312699	LINE	L1VL4	L1	chr8L1VL469312572	ProperStrand	1	chrX	162779493	162779513	protein_coding	Gpm6b	intron	ENSMUSG00000031342	NonProperStrand	61	1	-inf
chr17	39847874	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	130449467	130449499	protein_coding	Srpx2	intron	ENSMUSG00000031253	ProperStrand	4	1	-3.7035
chr7	120650888	120651243	SINE	B4A	B4	chr7B4A120650983	NonProperStrand	1	chr5	37029464	37029554	protein_coding	D5Ertd579e	intron	ENSMUSG00000029190	NonProperStrand	43	1	-inf
chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr13	44869573	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-6.3718
chr4	129608273	129608363	SINE	B1_Mm	Alu	chr4B1_Mm129608249	NonProperStrand	6	chr4	129608373	129608473	SINE	MIRb	MIR	chr4MIRb129608388	NonProperStrand	5	5	-inf
chr5	146261163	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	149065914	149066044	protein_coding	Pik3cd	intron	ENSMUSG00000039936	ProperStrand	144	1	-3.4101
chr5	146261171	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	106261530	106261627	protein_coding	Ern1	exon	ENSMUSG00000020715	NonProperStrand	15	1	-7.8289
chr17	74270743	74270840	protein_coding	Xdh	intron	ENSMUSG00000024066	ProperStrand	20	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.3035
chr5	60300734	60300824	LINE	Lx3_Mus	L1	chr5Lx3_Mus60300715	NonProperStrand	1	chr5	60300976	60301076	LINE	Lx3_Mus	L1	chr5Lx3_Mus60300715	ProperStrand	1	1	-inf
chr12	86470203	86470264	protein_coding	Dlst	intron	ENSMUSG00000004789	ProperStrand	48	chr8	119530395	119530463	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	121	1	-11.0634
chr5	146261022	146261045	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	35973520	35973624	protein_coding-noncoding	Acad9	utr5	ENSMUSG00000027710	NonProperStrand	2	1	-12.4657
chr17	12758946	12759029	LTR	ETnERV-int	ERVK	chr17ETnERV-int12757626	ProperStrand	1	chr17	12759869	12759942	LTR	ETnERV-int	ERVK	chr17ETnERV-int12759493	ProperStrand	1	1	-inf
chr15	35913215	35913234	LTR	RMER15	ERVL	chr15RMER1535912743	ProperStrand	1	chr2	167511626	167511692	protein_coding	Tmem189	intron	ENSMUSG00000090213	NonProperStrand	16	1	-inf
chr10	8810212	8810298	DNA	URR1B	MER1_type	chr10URR1B8810156	NonProperStrand	1	chr17	39847183	39847259	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	70334225	70334338	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	chr18	34941977	34942021	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-7.4879
chr13	53906802	53906902	LTR	MT2A	ERVL	chr13MT2A53906726	NonProperStrand	1	chr13	53907249	53907339	LTR	MTEa-int	MaLR	chr13MTEa-int53907098	ProperStrand	1	1	-inf
chr17	47815877	47815954	protein_coding	Gm20517	intron	ENSMUSG00000023984	NonProperStrand	8	chr17	47820855	47820922	protein_coding	Usp49	utr3	ENSMUSG00000090115	NonProperStrand	9	1	-23.8657
chr5	118654678	118654729	protein_coding	Rnft2	intron	ENSMUSG00000032850	NonProperStrand	136	chr19	6095089	6095163	protein_coding	Gm550	exon	ENSMUSG00000079472	ProperStrand	4	1	-16.0658
chr17	39847173	39847218	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	105893303	105893400	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n105893254	NonProperStrand	2	1	-6.5615
chr9	123461799	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	20	-8.7243
chr16	17778197	17778220	protein_coding-noncoding	Klhl22	utr5	ENSMUSG00000022750	ProperStrand	3	chr16	17760178	17760250	protein_coding	Klhl22	utr5	ENSMUSG00000022750	ProperStrand	46	1	-18.9645
chrX	8142640	8142730	LINE	L1_Mm	L1	chrXL1_Mm8142363	NonProperStrand	3	chr2	52103912	52104012	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-16.7378
chr3	145601836	145601926	protein_coding-noncoding	2410004B18Rik	utr5	ENSMUSG00000036873	ProperStrand	1	chr3	145601955	145602055	protein_coding	2410004B18Rik	exon	ENSMUSG00000036873	ProperStrand	7	1	-inf
chrX	121311856	121311949	Satellite	MurSAT1	Satellite	chrXMurSAT1121311739	NonProperStrand	1	chr13	24475492	24475532	protein_coding	Cmah	intron	ENSMUSG00000016756	ProperStrand	6	1	-inf
chr11	97781861	97782354	SINE	MIRc	MIR	chr11MIRc97781828	ProperStrand	5	chr11	97778314	97781376	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n97778307	NonProperStrand	8	1	-20.8574
chr7	12930795	12930847	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr6	28486089	28486131	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-5.9657
chr12	116372913	116373003	LINE	L1_Mur2	L1	chr12L1_Mur2116372861	NonProperStrand	1	chr12	116372960	116373060	LINE	L1_Mur2	L1	chr12L1_Mur2116372922	NonProperStrand	1	1	-inf
chr17	56709557	56709647	protein_coding-noncoding	Safb2	utr3	ENSMUSG00000042625	NonProperStrand	12	chr17	56709463	56709563	protein_coding	Safb2	intron	ENSMUSG00000042625	NonProperStrand	49	1	-15.7399
chr15	59025696	59025741	LINE	L2a	L2	chr15L2a59025672	NonProperStrand	4	chr15	59024160	59024215	Other	RMER1A	Other	chr15RMER1A59024057	NonProperStrand	1	1	-inf
chr18	63867383	63867504	LINE	Lx5	L1	chr18Lx563867096	ProperStrand	1	chr18	63886700	63886723	protein_coding	Wdr7	intron	ENSMUSG00000040560	ProperStrand	39	1	-inf
chr13	108324170	108357409	DNA	RCHARR1	MER1_type	chr13RCHARR1108356937	ProperStrand	1	chr17	39847044	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	150572382	150572452	LTR	IAPEY3-int	ERVK	chrXIAPEY3-int150571486	NonProperStrand	14	chr9	120964227	120964298	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-12.0912
chr15	29353691	29353709	LINE	L1_Mus2	L1	chr15L1_Mus229353224	NonProperStrand	1	chr4	137557449	137557563	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-inf
chr15	73158711	73158788	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr10	42370872	42370939	protein_coding	Ostm1	intron	ENSMUSG00000038280	NonProperStrand	116	1	-6.1246
chr2	173243883	173243973	Low_complexity	GA-rich	Low_complexity	chr2GA-rich173243792	NonProperStrand	5	chr2	173243710	173243810	SINE	B1_Mus1	Alu	chr2B1_Mus1173243644	NonProperStrand	3	3	-inf
chr4	155155656	155155756	lincRNA	Gm13644	intron	ENSMUSG00000085119	NonProperStrand	7	chr4	155155780	155155870	protein_coding	Tmem88b	utr3	ENSMUSG00000073680	ProperStrand	45	3	-inf
chr3	87086571	87088172	LINE	L1Md_F2	L1	chr3L1Md_F287085258	NonProperStrand	11	chr6	3201504	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-6.1647
chr19	24200747	24200817	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	127	chr1	52185981	52186053	protein_coding	Stat1	intron	ENSMUSG00000026104	NonProperStrand	47	1	-11.0089
chr2	87840992	87841013	LINE	L1_Mus4	L1	chr2L1_Mus487840970	ProperStrand	1	chr5	132436665	132436759	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-inf
chr5	146261253	146261284	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr7	98161981	98162002	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-6.7815
chr4	43492795	43492885	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr6	50188217	50188317	protein_coding	Dfna5	intron	ENSMUSG00000029821	NonProperStrand	23	1	-9.0212
chr17	35093138	35093228	SINE	B2_Mm2	B2	chr17B2_Mm235093133	ProperStrand	1	chr17	35093393	35093493	protein_coding	Hspa1b	utr3	ENSMUSG00000090877	NonProperStrand	1	1	-inf
chr3	138849858	138849915	LTR	MLT1B	MaLR	chr3MLT1B138849525	ProperStrand	3	chr11	53412009	53415440	protein_coding	Kif3a	utr3	ENSMUSG00000018395	ProperStrand	47	3	-inf
chr2	5379290	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	124381519	124381685	protein_coding	Ccdc62	intron	ENSMUSG00000061882	NonProperStrand	30	1	-5.9007
chr15	82956077	82956177	SINE	B3	B2	chr15B382955985	NonProperStrand	1	chr15	82956200	82956290	SINE	RSINE1	B4	chr15RSINE182956203	NonProperStrand	2	1	-inf
chr15	26311091	26409151	LINE	L1_Mus1	L1	chr15L1_Mus126372245	NonProperStrand	2	chr15	26409156	26409256	LINE	L1_Mus1	L1	chr15L1_Mus126407884	NonProperStrand	2	2	-inf
chr6	47495080	47495136	protein_coding	Ezh2	intron	ENSMUSG00000029687	NonProperStrand	20	chr18	74035636	74035693	protein_coding	Mro	intron	ENSMUSG00000064036	NonProperStrand	26	1	-15.9609
chr9	123461820	123461894	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	65857674	65857758	protein_coding	Csrnp3	exon	ENSMUSG00000044647	ProperStrand	14	1	-3.7266
chr17	39847222	39847282	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	6975162	6975225	SINE	B3	B2	chr19B36975063	NonProperStrand	2	1	-6.5615
chr4	133867149	133869283	LINE	Lx8	L1	chr4Lx8133867116	ProperStrand	4	chr17	39847494	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr4	77893360	77893450	LINE	L1_Rod	L1	chr4L1_Rod77893306	NonProperStrand	1	chr4	81003190	81003290	protein_coding	Mpdz	intron	ENSMUSG00000028402	ProperStrand	1	1	-inf
chr7	36508339	36508439	protein_coding-noncoding	Dpy19l3	utr3	ENSMUSG00000043671	ProperStrand	1	chr7	36508502	36508592	protein_coding	Dpy19l3	intron	ENSMUSG00000043671	ProperStrand	2	1	-inf
chr10	52417958	52418011	protein_coding	Slc35f1	intron	ENSMUSG00000038602	ProperStrand	51	chr9	78478969	78479012	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-7.8318
chr17	10212441	10212469	LINE	L1Md_F2	L1	chr17L1Md_F210212271	NonProperStrand	1	chr4	51239781	51239820	protein_coding	Cylc2	intron	ENSMUSG00000039555	NonProperStrand	2	1	-inf
chr5	115101241	115101363	protein_coding	Trpv4	intron	ENSMUSG00000014158	NonProperStrand	78	chr5	114852012	114852030	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-8.7775
chr11	109011648	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	114851973	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	2	-5.9508
chr17	39847960	39848052	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	18925046	18925106	processed_transcript	Gm15797	.	ENSMUSG00000086059	ProperStrand	3	1	-4.3512
chr13	29951562	29951640	SINE	B1_Mur2	Alu	chr13B1_Mur229951481	ProperStrand	2	chr13	29957080	29957146	SINE	B2_Mm2	B2	chr13B2_Mm229957042	NonProperStrand	14	1	-19.5799
chrX	103473904	103473958	LINE	L1Md_F2	L1	chrXL1Md_F2103473684	NonProperStrand	19	chr4	108718132	108718221	protein_coding	Nrd1	intron	ENSMUSG00000053510	NonProperStrand	9	1	-18.1720
chr17	39843809	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr16	23110837	23110934	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	2	-4.9803
chr17	39846842	39846932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	84368712	84371545	SINE	B1_Mur1	Alu	chr11B1_Mur184368692	ProperStrand	1	1	-inf
chrX	7881605	7882162	LINE	L1Md_F2	L1	chrXL1Md_F27882024	ProperStrand	1	chr9	118674951	118674986	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr12	32827294	32827341	LINE	L2	L2	chr12L232827041	NonProperStrand	2	chr5	107959572	107959629	protein_coding	1700028K03Rik	intron	ENSMUSG00000089798	NonProperStrand	21	1	-20.6625
chr17	39846465	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	10199560	10199649	SINE	B4A	B4	chr19B4A10199548	NonProperStrand	3	2	-8.0300
chr12	73155591	73155681	LINE	L1M2	L1	chr12L1M273155508	ProperStrand	1	chrX	154295880	154295980	protein_coding	Cnksr2	intron	ENSMUSG00000025658	ProperStrand	6	1	-inf
chr3	34027600	34027660	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chrX	56496639	56496655	protein_coding	Fgf13	intron	ENSMUSG00000031137	ProperStrand	21	1	-12.9887
chr11	102544104	102544154	DNA	URR1A	MER1_type	chr11URR1A102544106	NonProperStrand	1	chr11	102542790	102542896	protein_coding	Gm1564	utr3	ENSMUSG00000051455	NonProperStrand	16	1	-inf
chr14	20730220	20730282	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	chr13	97190562	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.4664
chr12	31493366	31493466	LINE	Lx3B	L1	chr12Lx3B31492890	NonProperStrand	2	chr12	31493494	31493584	LINE	Lx3B	L1	chr12Lx3B31493381	NonProperStrand	2	2	-inf
chr3	90031320	90034105	SINE	B1_Mus1	Alu	chr3B1_Mus190031215	ProperStrand	8	chr3	90026648	90031312	protein_coding	Rab13	intron	ENSMUSG00000027935	NonProperStrand	20	8	-inf
chr17	32063277	32063326	SINE	B4A	B4	chr17B4A32063199	NonProperStrand	2	chr17	88160876	88160952	protein_coding	Kcnk12	intron	ENSMUSG00000050138	NonProperStrand	10	2	-inf
chr12	45139102	45139192	LINE	Lx8	L1	chr12Lx845139087	NonProperStrand	1	chr12	45138800	45138900	LTR	RLTR12B	ERVK	chr12RLTR12B45138618	ProperStrand	1	1	-inf
chr2	180196502	180197050	protein_coding	Slco4a1	intron	ENSMUSG00000038963	NonProperStrand	161	chr16	18228445	18228468	protein_coding	Zdhhc8	exon	ENSMUSG00000060166	ProperStrand	10	2	-21.2367
chr7	25673844	25673934	protein_coding-noncoding	Rps19	utr5	ENSMUSG00000040952	NonProperStrand	1	chr7	25673576	25673676	protein_coding	Rps19	intron	ENSMUSG00000040952	NonProperStrand	1	1	-inf
chr2	24975549	24975615	SINE	B1_Mus2	Alu	chr2B1_Mus224975503	NonProperStrand	1	chr9	123461920	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847162	39847184	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	106115819	106115935	protein_coding-noncoding	Ftsj3	utr3	ENSMUSG00000020706	NonProperStrand	2	1	-6.5615
chr12	109579280	109579343	protein_coding	Cyp46a1	intron	ENSMUSG00000021259	ProperStrand	108	chr12	109550360	109550431	protein_coding	Hhipl1	exon	ENSMUSG00000021260	ProperStrand	179	1	-8.6525
chr9	40803233	40803297	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr7	100082769	100082821	protein_coding	Prcp	utr3	ENSMUSG00000061119	NonProperStrand	6	1	-12.1897
chr1	143093717	143093902	LINE	L1Md_T	L1	chr1L1Md_T143093321	NonProperStrand	1	chr9	64177940	64178223	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-inf
chr8	40437960	40438070	LINE	L1MA5	L1	chr8L1MA540437820	ProperStrand	1	chr8	40424434	40424464	LINE	L1Md_T	L1	chr8L1Md_T40421554	NonProperStrand	1	1	-inf
chr2	90395143	90395172	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr2	70841753	70841772	protein_coding	Mettl8	intron	ENSMUSG00000041975	NonProperStrand	8	1	-13.8613
chr13	96656738	96658616	protein_coding	Iqgap2	intron	ENSMUSG00000021676	ProperStrand	82	chr17	13852384	13852414	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	1	-9.7376
chrX	106194459	106194669	LINE	Lx8	L1	chrXLx8106194372	NonProperStrand	35	chrX	106200306	106202508	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	2	-20.6494
chr10	83452728	83452766	LINE	Lx8	L1	chr10Lx883452621	NonProperStrand	1	chr17	39845239	39845309	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	1	-inf
chr7	107666688	107666752	SINE	B4A	B4	chr7B4A107666690	ProperStrand	1	chr9	57423755	57423842	protein_coding	Scamp2	intron	ENSMUSG00000040188	NonProperStrand	41	1	-inf
chr7	80078686	80078724	LINE	L1Md_T	L1	chr7L1Md_T80078468	ProperStrand	2	chr9	123461913	123461955	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	63531860	63531950	protein_coding	Fbxl17	intron	ENSMUSG00000023965	NonProperStrand	24	chr9	113904125	113904225	protein_coding	Fbxl2	intron	ENSMUSG00000032507	ProperStrand	5	1	-19.9720
chr17	39843882	39843929	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr9	70341353	70342024	protein_coding	Rnf111	intron	ENSMUSG00000032217	NonProperStrand	58	1	-3.0409
chr3	130026106	130026174	protein_coding	Col25a1	intron	ENSMUSG00000058897	NonProperStrand	112	chr16	19883802	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-7.6552
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr8	71251813	71251883	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-8.8244
chr15	85085019	85085132	protein_coding	Fbln1	intron	ENSMUSG00000006369	NonProperStrand	34	chr12	101711525	101711565	protein_coding	Ttc7b	intron	ENSMUSG00000033530	NonProperStrand	10	1	-16.8518
chr11	62282271	62282330	protein_coding	Pigl	intron	ENSMUSG00000014245	ProperStrand	32	chr1	63210921	63210957	protein_coding	Ndufs1	intron	ENSMUSG00000025968	NonProperStrand	47	1	-13.7862
chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	80331786	80331802	protein_coding	Lrrtm4	intron	ENSMUSG00000052581	ProperStrand	12	1	-4.0248
chr16	22430420	22430532	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr5	149048784	149048819	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	2	-12.9223
chr11	6317058	6334544	protein_coding-noncoding	Ppia	utr5	ENSMUSG00000071866	ProperStrand	5	chr9	123461932	123461989	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr5	108088009	108088109	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	chr2	138311160	138311250	protein_coding	Btbd3	intron	ENSMUSG00000062098	ProperStrand	66	1	-10.8858
chr10	40258576	40258666	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	106501243	106501343	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	28	1	-6.8647
chr13	112860370	112860445	LTR	LTR16A	ERVL	chr13LTR16A112860198	NonProperStrand	2	chr13	112866533	112866602	LTR	RLTR41	ERV1	chr13RLTR41112866416	ProperStrand	2	2	-inf
chr17	39846653	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	71603778	71603823	LTR	MYSERV6-int	ERVK	chr6MYSERV6-int71603198	NonProperStrand	3	1	-4.3017
chr7	81874839	81874939	DNA	MER5A	MER1_type	chr7MER5A81874837	ProperStrand	3	chr7	81874684	81874774	LTR	MLT1C	MaLR	chr7MLT1C81874390	ProperStrand	3	3	-inf
chr10	122057820	122057940	LINE	L2a	L2	chr10L2a122057795	NonProperStrand	1	chr11	120626982	120627016	pseudogene	Gm11771	.	ENSMUSG00000083618	NonProperStrand	30	1	-inf
chr17	39846765	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	123383710	123383754	SINE	B1_Mus2	Alu	chr9B1_Mus2123383706	ProperStrand	1	1	-inf
chr14	57809319	57809382	LINE	L1M4	L1	chr14L1M457809143	ProperStrand	1	chr17	39847621	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39848486	39848590	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	97166404	97166438	protein_coding	Fam113b	intron	ENSMUSG00000044250	NonProperStrand	7	1	-5.7189
chr17	39848486	39848576	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	34863657	34863757	LINE	L1Md_F2	L1	chr4L1Md_F234863523	ProperStrand	3	1	-7.6307
chr3	37685498	37685598	LINE	Lx8	L1	chr3Lx837685463	NonProperStrand	1	chr3	37685325	37685415	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n37685314	ProperStrand	1	1	-inf
chr11	53478090	53478215	protein_coding	Rad50	intron	ENSMUSG00000020380	ProperStrand	2	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-15.3042
chr11	4768142	4768242	LTR	ORR1A3	MaLR	chr11ORR1A34767925	NonProperStrand	1	chr11	4768237	4782195	protein_coding	Nipsnap1	intron	ENSMUSG00000034285	NonProperStrand	68	1	-inf
chr11	97781636	97781696	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr13	97190567	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.8531
chr10	29227357	29227417	protein_coding	Rspo3	intron	ENSMUSG00000019880	NonProperStrand	17	chr17	32220015	32220097	pseudogene	Pdxk-ps	.	ENSMUSG00000002791	ProperStrand	20	1	-16.8066
chr2	132306655	132306704	LINE	L1MA5	L1	chr2L1MA5132306646	NonProperStrand	1	chr1	72824576	72824629	LTR	MLT1B	MaLR	chr1MLT1B72824512	NonProperStrand	58	1	-inf
chr10	40258543	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr3	37481454	37481661	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	2	-11.8414
chr4	118219110	118219200	DNA	MER33	MER1_type	chr4MER33118219121	ProperStrand	6	chr4	118218983	118219083	SINE	B2_Mm1t	B2	chr4B2_Mm1t118218929	ProperStrand	2	2	-inf
chr17	39846378	39846499	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	114022845	114022873	LTR	RLTR12A	ERVK	chrXRLTR12A114022657	NonProperStrand	1	1	-inf
chr4	126687222	126687330	LTR	IAPEz-int	ERVK	chr4IAPEz-int126686119	ProperStrand	6	chr4	126700567	126700613	protein_coding	Sfpq	exon	ENSMUSG00000028820	ProperStrand	20	1	-19.3610
chr18	65646932	65647054	LINE	L1_Mur3	L1	chr18L1_Mur365646783	NonProperStrand	9	chr6	3201504	3201534	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-6.5801
chr12	75572475	75572575	LINE	L1Md_F2	L1	chr12L1Md_F275571619	ProperStrand	6	chr12	75572583	75572673	LINE	Lx3_Mus	L1	chr12Lx3_Mus75572602	ProperStrand	2	2	-inf
chr17	39847174	39847225	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	73026632	73026693	SINE	B1_Mm	Alu	chrXB1_Mm73026625	ProperStrand	5	1	-4.3348
chr15	76906135	76906259	SINE	B1_Mur1	Alu	chr15B1_Mur176906120	ProperStrand	10	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-12.2890
chr7	46851961	46854052	LTR	MTC	MaLR	chr7MTC46853906	NonProperStrand	44	chr18	12506226	12506242	protein_coding	Lama3	intron	ENSMUSG00000024421	ProperStrand	20	2	-inf
chr2	157557844	157557976	LTR	ORR1A1-int	MaLR	chr2ORR1A1-int157557334	NonProperStrand	5	chr10	123008246	123008263	protein_coding	Fam19a2	intron	ENSMUSG00000044071	ProperStrand	41	1	-18.1172
chr16	23109749	23109849	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	123	chr2	160629589	160629679	protein_coding	Zhx3	intron	ENSMUSG00000035877	ProperStrand	62	2	-16.5848
chr12	54089174	54089274	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	chr9	56223765	56223855	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	2	-9.9419
chr5	146261153	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	30099102	30099166	protein_coding	Dpf1	intron	ENSMUSG00000030584	ProperStrand	5	1	-10.1672
chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	95974218	95979313	SINE	B1F2	Alu	chr11B1F295975275	NonProperStrand	3	1	-4.3512
chr3	101069218	101069270	LINE	L1MC1	L1	chr3L1MC1101069212	ProperStrand	1	chr3	101070770	101070875	LINE	L1_Mur3	L1	chr3L1_Mur3101070179	NonProperStrand	1	1	-inf
chr8	94825756	94825820	LINE	L1MB2	L1	chr8L1MB294825120	NonProperStrand	4	chr18	35607266	35607304	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-14.0882
chr9	72746439	72747175	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	chr2	156147982	156148082	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	NonProperStrand	55	1	-8.8269
chr8	91323465	91323518	LTR	ORR1D1	MaLR	chr8ORR1D191323348	ProperStrand	1	chr16	24685404	24685487	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	1	-inf
chr17	34985281	34985429	protein_coding	Skiv2l	exon	ENSMUSG00000040356	NonProperStrand	14	chr12	21406523	21406627	protein_coding	Ywhaq	intron	ENSMUSG00000076432	ProperStrand	53	1	-15.2303
chr4	132352898	132352982	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	276	chr4	132310292	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-6.6824
chr1	119642622	119642638	LTR	RLTR25B	ERVK	chr1RLTR25B119642602	NonProperStrand	1	chr9	123461905	123461977	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	146261001	146261023	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	67805994	67806133	protein_coding	Psmg2	intron	ENSMUSG00000024537	ProperStrand	5	1	-10.1672
chr8	114926474	114926554	LINE	L1MA7	L1	chr8L1MA7114926272	NonProperStrand	1	chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	32301664	32301748	protein_coding	Mettl6	intron	ENSMUSG00000021891	NonProperStrand	8	chr13	44869573	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.5479
chr17	39847702	39847795	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	109027215	109027266	protein_coding	6030452D12Rik	intron	ENSMUSG00000054069	NonProperStrand	1	1	-inf
chr5	59519559	59519649	LTR	RLTR24	ERV1	chr5RLTR2459519343	ProperStrand	1	chr5	86695381	86695481	protein_coding	Tmprss11c	intron	ENSMUSG00000061184	NonProperStrand	3	1	-inf
chr14	19278154	19278209	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-9.0110
chr5	146261164	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	74900310	74900425	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-3.2648
chr1	151423550	151428371	LINE	L1Md_F2	L1	chr1L1Md_F2151426846	ProperStrand	2	chr17	39847191	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr11	71431710	71431810	LINE	L1M3	L1	chr11L1M371431706	NonProperStrand	1	chr11	71432035	71432125	LTR	ORR1A4	MaLR	chr11ORR1A471432013	ProperStrand	1	1	-inf
chr10	51234481	51234499	LINE	Lx2B	L1	chr10Lx2B51233822	NonProperStrand	5	chr14	118680900	118680999	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n118680909	NonProperStrand	1	1	-inf
chr14	19278163	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr9	106214989	106215017	protein_coding	Poc1a	intron	ENSMUSG00000023345	ProperStrand	63	2	-17.9578
chr18	31008546	31008636	LINE	L1_Mur3	L1	chr18L1_Mur331008559	ProperStrand	1	chr18	30994628	30994728	LINE	Lx7	L1	chr18Lx730993904	NonProperStrand	1	1	-inf
chrX	73823447	73823537	DNA	URR1A	MER1_type	chrXURR1A73823321	ProperStrand	4	chrX	73802323	73802423	LINE	L1Md_F2	L1	chrXL1Md_F273799501	ProperStrand	20	3	-inf
chr8	47487100	47487190	Other	RMER1C	Other	chr8RMER1C47486759	ProperStrand	1	chr8	47487307	47487407	Other	RMER1C	Other	chr8RMER1C47487314	ProperStrand	1	1	-inf
chr18	21290658	21290734	protein_coding	Fam59a	intron	ENSMUSG00000042680	ProperStrand	30	chr6	72681352	72681393	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	1	-10.3421
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	44137070	44138850	protein_coding	Dpagt1	intron	ENSMUSG00000032123	ProperStrand	4	1	-12.2244
chr15	83406261	83406285	protein_coding	Ttll12	utr3	ENSMUSG00000016757	ProperStrand	38	chr15	83378388	83378491	protein_coding	Mcat	intron	ENSMUSG00000048755	ProperStrand	20	1	-15.1882
chr17	34950964	34951019	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr8	69112787	69112845	pseudogene	Gm16330	.	ENSMUSG00000085082	NonProperStrand	1	1	-inf
chr17	39848486	39848535	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	4749744	4749775	protein_coding	Shcbp1	exon	ENSMUSG00000022322	ProperStrand	3	1	-7.6307
chr6	12041631	12041721	LINE	Lx8	L1	chr6Lx812041160	NonProperStrand	2	chr6	12041722	12041822	LTR	RLTR45	ERVK	chr6RLTR4512041717	NonProperStrand	2	2	-inf
chr7	29476983	29477073	SINE	B1_Mus1	Alu	chr7B1_Mus129476930	ProperStrand	2	chr7	29476810	29476910	SINE	B3	B2	chr7B329476743	NonProperStrand	1	1	-inf
chr11	117773451	117774244	SINE	B1F1	Alu	chr11B1F1117773435	NonProperStrand	24	chr11	117773035	117773411	SINE	ID_B1	B4	chr11ID_B1117773029	NonProperStrand	14	14	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr2	105747278	105747352	protein_coding	Immp1l	intron	ENSMUSG00000042670	NonProperStrand	30	1	-7.9563
chr7	30422196	30422224	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int30422151	ProperStrand	2	chr5	31201995	31202013	protein_coding	Agbl5	intron	ENSMUSG00000029165	NonProperStrand	37	1	-21.5930
chr1	55174145	55174235	LTR	ORR1B1-int	MaLR	chr1ORR1B1-int55173718	ProperStrand	1	chr1	55174491	55174591	LTR	RMER12	ERVK	chr1RMER1255174262	ProperStrand	1	1	-inf
chr11	88827488	88827533	protein_coding	Gm15698	utr5	ENSMUSG00000057534	ProperStrand	1	chr9	75398349	75398404	protein_coding	Tmod3	intron	ENSMUSG00000058587	ProperStrand	73	1	-inf
chr2	119090909	119090965	LINE	Lx7	L1	chr2Lx7119090608	ProperStrand	1	chr2	119090464	119090566	SINE	ID_B1	B4	chr2ID_B1119090393	ProperStrand	1	1	-inf
chrX	103955754	103955854	LINE	L1_Mus3	L1	chrXL1_Mus3103955018	ProperStrand	1	chr5	92056096	92056186	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-inf
chr7	68114289	68114360	LINE	L1Md_F2	L1	chr7L1Md_F268114085	ProperStrand	3	chr7	68103892	68103952	LINE	L1Md_F3	L1	chr7L1Md_F368103148	ProperStrand	3	1	-20.2168
chr9	57751009	57751109	LTR	MTD	MaLR	chr9MTD57750844	ProperStrand	10	chr9	57751103	57751808	Other	RMER1B	Other	chr9RMER1B57751557	NonProperStrand	8	8	-inf
chrX	20681196	20681408	LINE	L1Md_T	L1	chrXL1Md_T20679691	ProperStrand	20	chr19	4767309	4767409	SINE	B1F	Alu	chr19B1F4767318	ProperStrand	1	1	-inf
chr11	29453120	29453206	protein_coding	1700034F02Rik	intron	ENSMUSG00000020461	ProperStrand	7	chr13	37939235	37939289	protein_coding	Rreb1	intron	ENSMUSG00000039087	ProperStrand	91	1	-15.6280
chr10	55148820	55148910	LTR	MTEa-int	MaLR	chr10MTEa-int55148825	NonProperStrand	1	chr10	55148715	55148815	LTR	MTEa	MaLR	chr10MTEa55148455	NonProperStrand	1	1	-inf
chr14	30604371	30604461	LINE	Lx5	L1	chr14Lx530603044	ProperStrand	1	chr14	30604671	30604771	LINE	Lx5	L1	chr14Lx530604653	ProperStrand	1	1	-inf
chr11	98962347	98962449	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n98962371	NonProperStrand	1	chr13	97190551	97190586	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39848426	39848559	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	81445036	81445056	LINE	L1_Mm	L1	chr4L1_Mm81444938	NonProperStrand	1	1	-inf
chr17	39847659	39847692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	97620796	97620868	protein_coding-noncoding	Tmem126b	utr3	ENSMUSG00000030614	NonProperStrand	2	1	-5.4040
chr7	70782545	70782587	protein_coding	Otud7a	intron	ENSMUSG00000033510	NonProperStrand	12	chr5	97094719	97094753	protein_coding	Fras1	intron	ENSMUSG00000034687	ProperStrand	39	1	-16.1960
chr3	96176670	96176744	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	8	chr13	97190573	97190629	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.2032
chr10	12585029	12585091	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	chr15	80078527	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-6.2704
chr13	13259104	13259194	LINE	Lx8	L1	chr13Lx813258486	ProperStrand	1	chr2	95076162	95076262	LINE	L1Md_A	L1	chr2L1Md_A95075842	NonProperStrand	1	1	-inf
chr13	44740311	44740401	SINE	ID_B1	B4	chr13ID_B144740242	ProperStrand	7	chr13	44740398	44740498	SINE	RSINE1	B4	chr13RSINE144740409	NonProperStrand	3	1	-inf
chr17	39847875	39847946	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	127232615	127232933	Simple_repeat	(TGGA)n	Simple_repeat	chr2(TGGA)n127232883	ProperStrand	2	1	-5.4040
chr9	123462042	123462083	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	70334958	70335076	sense_intronic	Gm15992	.	ENSMUSG00000086883	ProperStrand	1	1	-inf
chr5	142668250	142668267	protein_coding	Sdk1	intron	ENSMUSG00000039683	NonProperStrand	86	chr7	35774229	35774321	protein_coding	Pepd	intron	ENSMUSG00000063931	NonProperStrand	73	1	-10.9042
chr6	124935313	124935340	SINE	B1_Mur3	Alu	chr6B1_Mur3124935263	NonProperStrand	6	chr19	40447680	40447797	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	1	-13.9730
chr14	12082579	12082679	Simple_repeat	(GGGAGA)n	Simple_repeat	chr14(GGGAGA)n12082575	ProperStrand	1	chr11	9134190	9134280	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	1	-inf
chr3	109123269	109123310	LINE	L1Md_F3	L1	chr3L1Md_F3109123267	NonProperStrand	1	chr2	5379296	5379347	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr14	47413799	47416385	LTR	MMERVK10C-int	ERVK	chr14MMERVK10C-int47414939	NonProperStrand	4	chr14	47413028	47413733	LTR	MTD	MaLR	chr14MTD47413520	NonProperStrand	2	2	-inf
chr4	141382803	141382819	LTR	RLTR40	ERVK	chr4RLTR40141382541	ProperStrand	1	chr4	152332309	152332423	Simple_repeat	(TCCA)n	Simple_repeat	chr4(TCCA)n152332244	ProperStrand	5	1	-inf
chr1	87924613	87924675	protein_coding	Spata3	intron	ENSMUSG00000026226	NonProperStrand	2	chr1	87944044	87944125	protein_coding	2810459M11Rik	intron	ENSMUSG00000026227	NonProperStrand	2	1	-19.8939
chr15	51784989	51785081	LINE	Lx8	L1	chr15Lx851784999	ProperStrand	1	chr15	51784867	51784967	SINE	B4	B4	chr15B451784774	NonProperStrand	1	1	-inf
chr10	28085833	28085936	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	chr1	77373056	77373114	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	1	-7.4107
chr2	61781624	61781682	LINE	Lx8	L1	chr2Lx861780773	NonProperStrand	1	chr17	39846583	39846631	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	150152103	150152185	LINE	L1_Mus1	L1	chrXL1_Mus1150152112	ProperStrand	1	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	61186910	61187024	LTR	IAPEz-int	ERVK	chr14IAPEz-int61184062	NonProperStrand	5	chr11	107296867	107296890	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-13.8997
chr17	24634878	24634919	protein_coding	Caskin1	intron	ENSMUSG00000033597	ProperStrand	20	chr8	85875159	85875279	protein_coding	4933434I20Rik	intron	ENSMUSG00000035057	ProperStrand	9	1	-18.3602
chr6	34311578	34311640	protein_coding	Akr1b8	intron	ENSMUSG00000029762	NonProperStrand	44	chr10	80421383	80427732	protein_coding	Gng7	intron	ENSMUSG00000048240	ProperStrand	79	1	-12.0950
chr6	37931818	37931908	LINE	MusHAL1	L1	chr6MusHAL137931116	ProperStrand	3	chr6	37931936	37932036	LTR	RMER17B	ERVK	chr6RMER17B37931921	ProperStrand	2	2	-inf
chr2	73012739	73012772	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr3	122542356	122542435	protein_coding	Pde5a	intron	ENSMUSG00000053965	NonProperStrand	19	1	-13.8797
chr17	23663445	23663462	LTR	ETnERV2-int	ERVK	chr17ETnERV2-int23660518	ProperStrand	1	chr17	39847099	39847167	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	180035008	180035068	SINE	B3	B2	chr2B3180034962	NonProperStrand	2	chr2	180034782	180034867	SINE	B4	B4	chr2B4180034792	NonProperStrand	8	1	-23.4058
chr9	70554624	70554714	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	chr1	58412162	58412262	protein_coding	Aox3l1	intron	ENSMUSG00000079554	NonProperStrand	27	1	-12.8459
chr3	13241607	13241630	LTR	RMER17C	ERVK	chr3RMER17C13241416	NonProperStrand	1	chr8	25728295	25728366	protein_coding	Adam18	intron	ENSMUSG00000031552	NonProperStrand	14	1	-inf
chr9	67593869	67593887	LTR	MYSERV16_I-int	ERVK	chr9MYSERV16_I-int67592808	ProperStrand	2	chr10	93213392	93213415	SINE	PB1D9	Alu	chr10PB1D993213304	ProperStrand	1	1	-inf
chr6	52115658	52115758	antisense	5730446D14Rik	.	ENSMUSG00000056445	ProperStrand	6	chr6	52115564	52115654	protein_coding	RP23-103L13.8	intron	ENSMUSG00000093412	NonProperStrand	2	1	-inf
chr11	87536888	87539019	protein_coding	Rnf43	intron	ENSMUSG00000034177	ProperStrand	44	chr13	97190540	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-9.3595
chr14	51089551	51089592	LINE	L1Md_F2	L1	chr14L1Md_F251088852	ProperStrand	3	chr12	78350926	78351022	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-12.2277
chr18	37752030	37752063	LINE	Lx5	L1	chr18Lx537747321	ProperStrand	1	chr18	77120788	77120867	protein_coding	Skor2	intron	ENSMUSG00000091519	ProperStrand	55	1	-inf
chr7	3219235	3219262	miRNA	Mir292	.	ENSMUSG00000078041	ProperStrand	8	chr9	123461866	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr2	104652516	104654162	protein_coding	Qser1	intron	ENSMUSG00000074994	NonProperStrand	35	chr12	105031074	105031114	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	1	-10.2894
chr5	80006515	80006615	LTR	IAPLTR4_I	ERVK	chr5IAPLTR4_I80006367	NonProperStrand	1	chr5	80006617	80006707	LTR	IAPLTR4_I	ERVK	chr5IAPLTR4_I80006525	NonProperStrand	1	1	-inf
chr10	62830397	62830458	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr15	53613152	53613203	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-5.7034
chr5	129533700	129533737	LTR	ORR1A2-int	MaLR	chr5ORR1A2-int129533457	NonProperStrand	10	chr5	129533239	129533320	LTR	ORR1A2	MaLR	chr5ORR1A2129533131	NonProperStrand	1	1	-inf
chr18	50761191	50761234	DNA	URR1B	MER1_type	chr18URR1B50761171	ProperStrand	1	chr17	39847674	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39843480	39843583	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	35462470	35462488	protein_coding	Dab2ip	intron	ENSMUSG00000026883	ProperStrand	17	1	-4.9181
chr9	123462082	123462138	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	137836616	137836637	protein_coding	Tacc2	intron	ENSMUSG00000030852	ProperStrand	3	1	-7.0114
chr3	62064832	62064922	LINE	Lx6	L1	chr3Lx662064748	ProperStrand	1	chr3	62065138	62065238	LINE	Lx6	L1	chr3Lx662064961	ProperStrand	1	1	-inf
chr17	39847811	39848009	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	135216687	135224966	protein_coding	Manba	intron	ENSMUSG00000028164	ProperStrand	20	3	-3.1878
chr9	107757786	107757876	protein_coding	Rbm6	intron	ENSMUSG00000032582	ProperStrand	49	chr4	119132944	119133044	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-8.1384
chr6	146550438	146550539	LINE	Lx5	L1	chr6Lx5146549740	NonProperStrand	1	chr9	123462119	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	97815702	97815774	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	chr17	66434634	66434716	protein_coding	Ndufv2	intron	ENSMUSG00000024099	ProperStrand	63	1	-10.3412
chr3	96270153	96270190	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr2	25538959	25539062	protein_coding	Lcn10	intron	ENSMUSG00000047356	NonProperStrand	4	1	-18.9771
chr11	20239228	20239328	LINE	Lx8	L1	chr11Lx820239219	NonProperStrand	2	chr11	20240095	20240185	LTR	RLTR31A_Mm	ERVK	chr11RLTR31A_Mm20239672	NonProperStrand	5	2	-inf
chr7	34215869	34215969	LINE	L1M2	L1	chr7L1M234215676	ProperStrand	13	chr7	34215997	34219063	LTR	ORR1B1-int	MaLR	chr7ORR1B1-int34217453	ProperStrand	12	4	-inf
chr10	7612846	7612883	LTR	MMERVK10C-int	ERVK	chr10MMERVK10C-int7610805	NonProperStrand	2	chr10	7616612	7616659	LTR	MMERVK10C-int	ERVK	chr10MMERVK10C-int7615735	NonProperStrand	7	1	-21.1088
chr17	39843393	39843456	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	78140791	78140864	protein_coding	Aldoc	utr3	ENSMUSG00000017390	ProperStrand	3	1	-8.6612
chr3	138808102	138808147	LINE	L1ME3A	L1	chr3L1ME3A138807925	ProperStrand	4	chr3	138823989	138824079	LTR	ORR1E	MaLR	chr3ORR1E138823986	NonProperStrand	2	2	-inf
chr2	72152910	72152970	protein_coding	B230120H23Rik	intron	ENSMUSG00000004085	ProperStrand	10	chr1	190800115	190800150	protein_coding	Kctd3	intron	ENSMUSG00000026608	ProperStrand	35	1	-16.7703
chr14	40839991	40840060	SINE	B1_Mm	Alu	chr14B1_Mm40839927	NonProperStrand	1	chr14	40840059	40840138	Simple_repeat	(GGAA)n	Simple_repeat	chr14(GGAA)n40840066	NonProperStrand	1	1	-inf
chr4	109361323	109361684	protein_coding	Faf1	intron	ENSMUSG00000010517	NonProperStrand	30	chr9	78202015	78202116	protein_coding	Gsta2	intron	ENSMUSG00000057933	NonProperStrand	15	1	-16.2483
chr14	30685595	30685637	DNA	Arthur1	Tip100	chr14Arthur130685471	NonProperStrand	1	chr14	30684118	30684179	LTR	ORR1B2	MaLR	chr14ORR1B230683968	ProperStrand	1	1	-inf
chr17	32276523	32276654	protein_coding	Notch3	intron	ENSMUSG00000038146	ProperStrand	60	chr19	53930782	53930805	protein_coding	Rbm20	intron	ENSMUSG00000043639	ProperStrand	31	1	-13.3592
chr11	99210148	99210224	protein_coding	Krt27	intron	ENSMUSG00000017588	ProperStrand	1	chr11	100481699	100481759	protein_coding	Nkiras2	intron	ENSMUSG00000017837	NonProperStrand	16	1	-inf
chr12	108898013	108898084	LTR	MTEb	MaLR	chr12MTEb108897893	NonProperStrand	1	chr17	39847495	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	126453429	126453549	protein_coding	AU040320	intron	ENSMUSG00000028830	NonProperStrand	53	chr6	128799447	128799470	protein_coding	BC035044	utr3	ENSMUSG00000090164	ProperStrand	6	2	-inf
chr17	26596194	26596224	DNA	MER2	MER2_type	chr17MER226596139	ProperStrand	1	chr17	39847767	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	30824288	30824388	protein_coding	Zfp14	exon	ENSMUSG00000053985	NonProperStrand	1	chr7	35041330	35041420	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	ProperStrand	102	1	-inf
chr10	40258596	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr6	38066308	38066328	protein_coding	Atp6v0a4	intron	ENSMUSG00000038600	NonProperStrand	2	1	-12.7698
chr13	42458998	42459096	LTR	RMER4B	ERVK	chr13RMER4B42458949	NonProperStrand	1	chr13	42459353	42459443	Simple_repeat	(GGAGAA)n	Simple_repeat	chr13(GGAGAA)n42459298	NonProperStrand	1	1	-inf
chr17	39847188	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	62342242	62342327	protein_coding	Tet1	exon	ENSMUSG00000047146	NonProperStrand	4	1	-4.8204
chr15	89281952	89282095	LINE	L1MEd	L1	chr15L1MEd89281953	ProperStrand	1	chr17	39847249	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	170121089	170121121	LINE	L1MA6	L1	chr2L1MA6170121005	NonProperStrand	1	chr2	22744855	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-inf
chr11	6528091	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr16	35544726	35544810	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	2	-17.1191
chr2	64267893	64267993	LINE	Lx7	L1	chr2Lx764267773	NonProperStrand	1	chr2	64267654	64267744	LTR	ORR1B2	MaLR	chr2ORR1B264267437	NonProperStrand	1	1	-inf
chr17	39844617	39844732	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr15	100528528	100528545	antisense	1810009N23Rik	.	ENSMUSG00000090062	ProperStrand	8	1	-6.4668
chr11	85058125	85058182	LTR	BGLII_Mus	ERVK	chr11BGLII_Mus85058019	ProperStrand	2	chr17	39847659	39847715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr17	39843734	39843823	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chrX	102041632	102041732	LTR	MTC	MaLR	chrXMTC102041555	NonProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr3	87536808	87536924	protein_coding	Arhgef11	intron	ENSMUSG00000041977	ProperStrand	12	1	-9.8312
chr2	12405885	12405916	LINE	Lx4B	L1	chr2Lx4B12404778	ProperStrand	2	chr11	78181173	78181476	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	1	-18.6969
mmu-miR-466i-5p	1	20	miRNA	mmu-miR-466i-5p	.	mmu-miR-466i-5p	ProperStrand	6	chr8	122883852	124942739	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	2	-17.6751
chr7	24312402	24312488	LINE	L1Md_F2	L1	chr7L1Md_F224311974	NonProperStrand	4	chr7	24302359	24302433	LINE	Lx3_Mus	L1	chr7Lx3_Mus24298388	NonProperStrand	4	2	-inf
chr10	61340957	61341256	protein_coding-noncoding	Col13a1	utr3	ENSMUSG00000058806	ProperStrand	2	chr10	61339264	61340955	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	2	-inf
chr9	123461822	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	74521190	74521233	protein_coding	Hoxd11	intron	ENSMUSG00000042499	NonProperStrand	3	1	-7.0114
chr15	98934333	98934375	protein_coding	Dnajc22	intron	ENSMUSG00000038009	NonProperStrand	43	chr13	97190556	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.7739
chr19	32156771	32156871	LINE	L1_Mus4	L1	chr19L1_Mus432153271	NonProperStrand	5	chr17	39846747	39846837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr2	94043755	94043845	LTR	MTA_Mm	MaLR	chr2MTA_Mm94043729	NonProperStrand	1	chr2	94043633	94043733	SINE	PB1D10	Alu	chr2PB1D1094043587	NonProperStrand	1	1	-inf
chr10	23785343	23785404	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr9	44626740	44626835	protein_coding	Mll1	exon	ENSMUSG00000002028	NonProperStrand	44	1	-10.6792
chr13	49590758	49590838	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	chr2	164853264	164853283	protein_coding	Ncoa5	intron	ENSMUSG00000039804	NonProperStrand	18	1	-13.4627
chr17	39846461	39846527	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	91928904	91928946	protein_coding-noncoding	Atp5o	utr3	ENSMUSG00000022956	ProperStrand	5	1	-3.1907
chr13	51105994	51106039	LTR	RMER5	ERV1	chr13RMER551105750	ProperStrand	1	chr17	39847763	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	127715270	127715370	LTR	MLT1F	MaLR	chrXMLT1F127715107	NonProperStrand	1	chrX	127715399	127715489	LTR	MLT1F	MaLR	chrXMLT1F127715401	NonProperStrand	1	1	-inf
chr17	39846966	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	121436661	121436774	SINE	B2_Mm2	B2	chr1B2_Mm2121436593	NonProperStrand	1	1	-inf
chr5	146261268	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	110281288	110281336	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-3.5519
chr7	132223036	132223126	LINE	L1Md_F2	L1	chr7L1Md_F2132221846	ProperStrand	1	chr1	122030460	122030560	protein_coding	3110009E18Rik	intron	ENSMUSG00000026388	NonProperStrand	1	1	-inf
chr17	39847636	39847663	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	103168095	103168132	LTR	MTE2b	MaLR	chr3MTE2b103168054	ProperStrand	2	2	-inf
chr11	50299330	50300942	SINE	RSINE1	B4	chr11RSINE150299227	ProperStrand	1	chr6	13590070	13590110	protein_coding	B630005N14Rik	intron	ENSMUSG00000042742	ProperStrand	12	1	-inf
chr12	44281835	44281855	LINE	L1Md_T	L1	chr12L1Md_T44281692	NonProperStrand	1	chr17	39846396	39846431	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	61383031	61383077	LTR	MTC	MaLR	chr9MTC61382819	NonProperStrand	8	chr9	61376719	61376775	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n61376622	ProperStrand	4	2	-inf
chr7	80081110	80081147	LINE	L1_Mur3	L1	chr7L1_Mur380081080	NonProperStrand	3	chr14	18269076	18269199	LTR	ORR1A1	MaLR	chr14ORR1A118268996	NonProperStrand	26	1	-inf
chrY	1280433	1284367	LTR	RLTR10C	ERVK	chrYRLTR10C1282668	NonProperStrand	3	chr5	122501582	122501672	antisense	Gm15637	.	ENSMUSG00000087386	NonProperStrand	35	3	-inf
chr17	39846807	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	56119514	56119611	SINE	B2_Mm2	B2	chr13B2_Mm256119416	ProperStrand	2	1	-5.3533
chr6	143162437	143162527	LTR	ORR1C1-int	MaLR	chr6ORR1C1-int143162344	NonProperStrand	1	chr6	143162039	143162139	LTR	RLTR28	ERVL	chr6RLTR28143162052	NonProperStrand	1	1	-inf
chr17	39847663	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	65777097	65777187	SINE	B3	B2	chr5B365777032	NonProperStrand	1	1	-inf
chr2	174286196	174286282	LTR	RLTR22_Mus	ERVK	chr2RLTR22_Mus174286176	ProperStrand	1	chr2	174287258	174287324	protein_coding	Atp5e	intron	ENSMUSG00000016252	NonProperStrand	1	1	-inf
chr17	28453871	28454372	protein_coding-noncoding	Fance	utr5	ENSMUSG00000007570	NonProperStrand	2	chr17	28453584	28454414	protein_coding	Fance	utr5	ENSMUSG00000007570	NonProperStrand	14	2	-inf
chr7	66043189	66043279	protein_coding	Atp10a	intron	ENSMUSG00000025324	ProperStrand	84	chr2	131918634	131918734	protein_coding	Slc23a2	intron	ENSMUSG00000027340	ProperStrand	27	1	-12.9625
chr5	134112276	134112376	LINE	Lx4B	L1	chr5Lx4B134111990	ProperStrand	1	chr5	122363162	122363252	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	1	-inf
chr8	31149862	31149934	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr9	17987812	17987830	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	1	-10.6399
chr10	21002688	21002756	LINE	L1Md_T	L1	chr10L1Md_T21000000	ProperStrand	2	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr17	39847188	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	102296533	102296657	protein_coding	Grn	intron	ENSMUSG00000034708	NonProperStrand	3	1	-5.4882
chrX	151316096	151316170	LINE	L1_Mus2	L1	chrXL1_Mus2151315418	ProperStrand	2	chrX	151317047	151317101	LTR	RLTR13D6	ERVK	chrXRLTR13D6151316469	NonProperStrand	1	1	-inf
chr5	146261240	146261267	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-5.9311
chr10	111482748	111482827	LINE	L1Md_T	L1	chr10L1Md_T111482363	NonProperStrand	7	chr11	6415932	6415950	protein_coding	Myo1g	exon	ENSMUSG00000020437	NonProperStrand	91	1	-15.6280
chr6	28830056	28830276	protein_coding-noncoding	Snd1	utr5	ENSMUSG00000001424	ProperStrand	21	chr6	28815891	28830079	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	4	-22.9014
chr13	86501816	86501916	LINE	L1_Mur2	L1	chr13L1_Mur286501024	ProperStrand	1	chr12	46008208	46008298	protein_coding	Stxbp6	intron	ENSMUSG00000046314	NonProperStrand	9	1	-inf
chr18	14775524	14775614	SINE	B1F2	Alu	chr18B1F214775494	NonProperStrand	1	chr18	14775650	14775750	SINE	RSINE1	B4	chr18RSINE114775670	NonProperStrand	1	1	-inf
chr12	78350939	78351023	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr2	166864708	166864752	protein_coding	Znfx1	intron	ENSMUSG00000039501	NonProperStrand	7	1	-10.2853
chr6	69305901	69306001	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int69305808	NonProperStrand	1	chr6	84801601	84801691	protein_coding	Exoc6b	intron	ENSMUSG00000033769	NonProperStrand	11	1	-inf
chr13	77804778	77804838	LINE	L1_Mm	L1	chr13L1_Mm77804460	ProperStrand	1	chr2	180685550	180685600	protein_coding	Nkain4	intron	ENSMUSG00000027574	ProperStrand	35	1	-inf
chr11	58055571	58057103	LINE	L1MA9	L1	chr11L1MA958056167	ProperStrand	3	chr11	58057105	58057302	LINE	L1MA9	L1	chr11L1MA958056930	ProperStrand	1	1	-inf
chr5	33521305	33521486	LTR	RMER19B	ERVK	chr5RMER19B33521324	ProperStrand	29	chr5	33521148	33521344	SINE	B2_Mm2	B2	chr5B2_Mm233521131	NonProperStrand	17	7	-20.0069
chr8	70352626	70352707	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	chr16	42090610	42090629	protein_coding	Lsamp	intron	ENSMUSG00000061080	ProperStrand	10	1	-11.0622
chr1	75250061	75250154	protein_coding	Ptprn	intron	ENSMUSG00000026204	ProperStrand	7	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.9733
chr19	23156753	23156853	LINE	L1Md_F2	L1	chr19L1Md_F223155325	NonProperStrand	1	chr19	23156850	23156940	LINE	L1Md_F2	L1	chr19L1Md_F223156838	NonProperStrand	1	1	-inf
chr17	39848199	39848313	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	144265979	144266007	SINE	MIR	MIR	chr2MIR144265830	NonProperStrand	2	1	-8.4422
chr9	123462015	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr10	111642212	111642230	protein_coding	Caps2	intron	ENSMUSG00000035694	NonProperStrand	3	1	-7.0114
chr6	35103940	35103981	LINE	L1_Mur3	L1	chr6L1_Mur335103856	ProperStrand	5	chr6	35107952	35108017	LINE	Lx8	L1	chr6Lx835107768	ProperStrand	9	2	-inf
chr5	142852509	142852609	SINE	B4	B4	chr5B4142852411	NonProperStrand	1	chr5	142852663	142852753	Simple_repeat	(TA)n	Simple_repeat	chr5(TA)n142852630	NonProperStrand	1	1	-inf
chr2	146966949	146966986	LINE	L1Md_T	L1	chr2L1Md_T146965533	ProperStrand	1	chr2	146968739	146968786	LINE	L1Md_T	L1	chr2L1Md_T146968337	NonProperStrand	1	1	-inf
chr19	8909503	8909568	SINE	B3	B2	chr19B38909476	NonProperStrand	5	chr19	8908921	8908988	SINE	RSINE1	B4	chr19RSINE18908906	NonProperStrand	1	1	-inf
chr3	17150588	17150678	Other	RMER1A	Other	chr3RMER1A17149499	NonProperStrand	1	chr3	17150763	17150863	Other	RMER1B	Other	chr3RMER1B17150706	NonProperStrand	1	1	-inf
chr9	40802854	40804541	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr13	97190560	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	5	-6.8118
chr15	74959444	74959461	LTR	RMER16	ERVK	chr15RMER1674959425	ProperStrand	1	chr17	39847675	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	23819631	23819721	LTR	MurERV4-int	ERVK	chr5MurERV4-int23819527	NonProperStrand	1	chr2	31193700	31193800	protein_coding	Hmcn2	intron	ENSMUSG00000055632	ProperStrand	328	1	-inf
chr14	78693360	78693401	protein_coding	Tnfsf11	intron	ENSMUSG00000022015	ProperStrand	100	chr15	80078499	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-7.0708
chr14	74550128	74550218	LINE	Lx3A	L1	chr14Lx3A74549511	NonProperStrand	1	chr14	74550396	74550496	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n74550366	ProperStrand	1	1	-inf
chr10	10205347	10205437	LTR	ORR1D1	MaLR	chr10ORR1D110205125	NonProperStrand	1	chr10	10119294	10119394	protein_coding	9130014G24Rik	intron	ENSMUSG00000050994	NonProperStrand	6	1	-inf
chr5	146261270	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr10	62847513	62847553	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-7.1148
chr17	39848162	39848189	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	158600475	158600492	protein_coding	Tor3a	intron	ENSMUSG00000060519	NonProperStrand	2	1	-8.4422
chr6	9412266	9412356	LINE	Lx6	L1	chr6Lx69412224	NonProperStrand	1	chr6	9412775	9412875	LINE	Lx6	L1	chr6Lx69412730	NonProperStrand	1	1	-inf
chr1	168295048	168295138	LTR	RLTR11B	ERVK	chr1RLTR11B168294945	NonProperStrand	1	chr3	8776448	8776548	Simple_repeat	(GAAA)n	Simple_repeat	chr3(GAAA)n8776421	NonProperStrand	1	1	-inf
chr17	39847915	39847957	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	84948376	84948402	SINE	B4A	B4	chr2B4A84948369	NonProperStrand	1	1	-inf
chr2	32877642	32881739	protein_coding-noncoding	Garnl3	utr3	ENSMUSG00000038860	NonProperStrand	11	chr2	32881565	32889657	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	2	-19.2662
chr11	90300082	90300172	LTR	MamGypLTR2b	Gypsy	chr11MamGypLTR2b90299995	NonProperStrand	1	chr11	90299441	90299541	LTR	RLTR15	ERVK	chr11RLTR1590299238	NonProperStrand	1	1	-inf
chr2	71790576	71790676	LTR	MTEb	MaLR	chr2MTEb71790532	ProperStrand	1	chr2	71790973	71791063	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n71790966	NonProperStrand	1	1	-inf
chr17	39847515	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	83055002	83055155	protein_coding	Ccdc142	intron	ENSMUSG00000079511	ProperStrand	1	1	-inf
chr17	39847903	39848035	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	76939739	76939756	protein_coding	Gm7271	intron	ENSMUSG00000091204	ProperStrand	2	1	-5.4040
chr6	124741224	124741277	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr3	88693961	88694017	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	66	1	-15.1162
chr10	78030312	78031867	LTR	RLTR17	ERVK	chr10RLTR1778031577	ProperStrand	3	chr17	39847658	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr4	59631222	59631254	protein_coding	Hsdl2	utr3	ENSMUSG00000028383	ProperStrand	12	chr5	81795747	81795764	protein_coding	Lphn3	intron	ENSMUSG00000037605	NonProperStrand	27	1	-16.9416
chr19	46512526	46512616	protein_coding	Sufu	intron	ENSMUSG00000025231	ProperStrand	59	chr7	28449067	28449167	protein_coding	Map3k10	intron	ENSMUSG00000040390	NonProperStrand	6	1	-16.8730
chr8	67974546	67974636	LINE	L1Md_F2	L1	chr8L1Md_F267973736	ProperStrand	2	chr15	78955037	78955137	protein_coding	Micall1	intron	ENSMUSG00000033039	ProperStrand	49	2	-inf
chr14	19933740	19933794	LINE	L1VL4	L1	chr14L1VL419933487	ProperStrand	2	chr14	19934624	19934700	LINE	L1_Mur2	L1	chr14L1_Mur219934294	NonProperStrand	1	1	-inf
chr17	39847507	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	79720976	79720992	SINE	PB1D10	Alu	chr15PB1D1079720951	NonProperStrand	3	1	-4.3512
chr3	133337419	133337503	LINE	L1Md_F2	L1	chr3L1Md_F2133337061	NonProperStrand	2	chr19	8725200	8725256	SINE	PB1D10	Alu	chr19PB1D108725206	ProperStrand	1	1	-inf
chr7	19419369	19419385	LINE	L1VL4	L1	chr7L1VL419419160	NonProperStrand	1	chr14	63017866	63017882	protein_coding	Gucy1b2	intron	ENSMUSG00000021933	NonProperStrand	2	1	-inf
chr8	87722986	87723044	LINE	L1VL1	L1	chr8L1VL187720793	NonProperStrand	1	chr17	39847440	39847507	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	106142095	106142144	protein_coding	Lrrc8d	intron	ENSMUSG00000046079	ProperStrand	4	chr7	4802530	4802626	protein_coding	Isoc2b	intron	ENSMUSG00000052605	ProperStrand	64	1	-17.6295
chr15	84201938	84202029	LINE	L1Md_F2	L1	chr15L1Md_F284201080	ProperStrand	15	chr15	84202125	84202225	Other	RMER1C	Other	chr15RMER1C84202085	NonProperStrand	5	4	-inf
chr4	134747816	134747916	SINE	B4A	B4	chr4B4A134747843	NonProperStrand	1	chr4	134747898	134747988	SINE	PB1D10	Alu	chr4PB1D10134747881	NonProperStrand	1	1	-inf
chr13	55680149	55680239	LTR	RMER4B	ERVK	chr13RMER4B55680039	NonProperStrand	2	chr13	55680236	55680336	SINE	B2_Mm2	B2	chr13B2_Mm255680235	ProperStrand	3	2	-inf
chr15	94200577	94200596	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	chr9	65201724	65201798	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-11.7290
chr4	66964774	66964874	LINE	Lx3A	L1	chr4Lx3A66964646	NonProperStrand	1	chr4	66964309	66964399	LTR	BGLII	ERVK	chr4BGLII66964124	NonProperStrand	1	1	-inf
chr16	32624380	32624400	protein_coding	Tfrc	intron	ENSMUSG00000022797	ProperStrand	40	chr17	25100913	25101050	protein_coding	Cramp1l	utr3	ENSMUSG00000038002	ProperStrand	64	1	-12.7116
chrX	38633946	38634028	LINE	L1Md_F2	L1	chrXL1Md_F238631495	ProperStrand	2	chrX	38634584	38634642	LINE	L1Md_F2	L1	chrXL1Md_F238634299	ProperStrand	1	1	-inf
chr12	119325154	119325192	protein_coding	Dnahc11	intron	ENSMUSG00000018581	ProperStrand	13	chr18	5593840	5593895	protein_coding	Zeb1	utr5	ENSMUSG00000024238	ProperStrand	44	1	-15.7766
chr11	12412073	12412203	LTR	IAPEz-int	ERVK	chr11IAPEz-int12410918	ProperStrand	10	chr11	12412198	12412289	LTR	IAPEz-int	ERVK	chr11IAPEz-int12412090	ProperStrand	4	4	-inf
chr1	9692779	9693366	SINE	B3	B2	chr1B39693220	NonProperStrand	1	chr1	9690114	9692758	protein_coding	Mybl1	utr5	ENSMUSG00000025912	ProperStrand	11	1	-inf
chr15	97053048	97053096	LTR	RMER6C	ERVK	chr15RMER6C97052919	NonProperStrand	4	chr17	39847598	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr17	39847460	39847506	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	34658294	34658361	SINE	B1F	Alu	chr3B1F34658305	NonProperStrand	1	1	-inf
chr1	132990555	132990688	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	chr13	97190544	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1761
chr15	50730708	50730795	LINE	Lx7	L1	chr15Lx750730306	ProperStrand	5	chr2	165809656	165809698	lincRNA	Gm11464	intron	ENSMUSG00000087351	ProperStrand	7	1	-21.1751
chr2	22744865	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	62452691	62452708	LTR	MTEa	MaLR	chr4MTEa62452556	NonProperStrand	1	1	-inf
chr12	111540551	111541774	LINE	Lx2B	L1	chr12Lx2B111541409	ProperStrand	2	chr12	111543579	111544546	LTR	RLTR10	ERVK	chr12RLTR10111543326	ProperStrand	4	2	-inf
chr5	146261020	146261041	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	62783112	62783215	protein_coding	Cdrt4	intron	ENSMUSG00000042200	NonProperStrand	5	1	-10.1672
chr2	163418601	163418701	SINE	B2_Mm2	B2	chr2B2_Mm2163418524	NonProperStrand	4	chr2	163418792	163418882	SINE	B3	B2	chr2B3163418745	ProperStrand	1	1	-inf
chr5	110129527	110129544	LINE	L1_Mus4	L1	chr5L1_Mus4110129261	ProperStrand	1	chr17	30096611	30096703	protein_coding	Mdga1	intron	ENSMUSG00000043557	NonProperStrand	98	1	-inf
chr7	123489793	123489809	protein_coding	Pik3c2a	intron	ENSMUSG00000030660	ProperStrand	9	chr9	65201725	65201838	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-14.9478
chr2	144567118	144567180	protein_coding	Dtd1	intron	ENSMUSG00000027430	ProperStrand	26	chr13	44869600	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-9.9872
chr3	105187707	105187807	LINE	L1VL4	L1	chr3L1VL4105187597	NonProperStrand	1	chr3	105187269	105187359	LINE	Lx2	L1	chr3Lx2105186189	NonProperStrand	1	1	-inf
chr7	18082712	18082812	LINE	Lx	L1	chr7Lx18082640	ProperStrand	1	chr7	18082554	18082644	LTR	RLTR1	ERV1	chr7RLTR118082302	ProperStrand	1	1	-inf
chr11	20016946	20016992	Other	RMER1B	Other	chr11RMER1B20016695	ProperStrand	2	chr11	20015376	20015432	SINE	B1_Mur1	Alu	chr11B1_Mur120015369	NonProperStrand	1	1	-inf
chr5	65335104	65335223	LINE	L1Md_F2	L1	chr5L1Md_F265334473	ProperStrand	2	chr17	39847868	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr6	130609896	130609986	LTR	ORR1A4-int	MaLR	chr6ORR1A4-int130607962	ProperStrand	1	chr6	130818051	130818151	Satellite	MMSAT4	Satellite	chr6MMSAT4130818050	ProperStrand	1	1	-inf
chr3	120464028	120464080	LINE	L1Md_F2	L1	chr3L1Md_F2120463995	ProperStrand	1	chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	118487643	118487696	protein_coding	Rbfox3	intron	ENSMUSG00000025576	NonProperStrand	19	chr2	52952477	52952540	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	1	-12.1624
chr15	73182810	73182899	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr2	152180156	152180215	pseudogene	Gm14165	.	ENSMUSG00000081434	ProperStrand	4	1	-13.0952
chr17	39846786	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	mmu-miR-574-5p	6	23	miRNA	mmu-miR-574-5p	.	mmu-miR-574-5p	ProperStrand	1	1	-inf
chr17	39846718	39847005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	125654528	125669218	protein_coding	Coq7	intron	ENSMUSG00000030652	ProperStrand	12	2	-3.1058
chr11	120369721	120369811	LTR	RMER19C	ERVK	chr11RMER19C120369730	NonProperStrand	9	chr11	120369623	120369723	SINE	B1_Mur1	Alu	chr11B1_Mur1120369596	ProperStrand	9	9	-inf
chrX	17488766	17510982	LINE	L1_Mus1	L1	chrXL1_Mus117499531	NonProperStrand	2	chrX	17511036	17511126	LINE	L1_Mus1	L1	chrXL1_Mus117508716	NonProperStrand	2	2	-inf
chr15	50730406	50730468	LINE	Lx7	L1	chr15Lx750730306	ProperStrand	5	chr1	7154616	7154647	protein_coding	Pcmtd1	intron	ENSMUSG00000051285	ProperStrand	119	1	-15.8283
chrX	7924594	7924611	LINE	L1Md_F2	L1	chrXL1Md_F27924311	NonProperStrand	2	chr3	130017497	130017573	protein_coding	Col25a1	intron	ENSMUSG00000058897	NonProperStrand	112	1	-18.2026
chr13	84586124	84586224	LINE	L1Md_T	L1	chr13L1Md_T84580600	NonProperStrand	1	chr13	84586376	84586466	LINE	L1Md_T	L1	chr13L1Md_T84586209	NonProperStrand	1	1	-inf
chr17	39843936	39843954	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr16	58679634	58679671	protein_coding	Cpox	utr3	ENSMUSG00000022742	ProperStrand	9	1	-7.7660
chr17	39846721	39846755	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	66859742	66859758	SINE	B3A	B2	chr18B3A66859668	NonProperStrand	1	1	-inf
chr5	125039906	125039978	protein_coding	Gtf2h3	intron	ENSMUSG00000029387	NonProperStrand	46	chr9	118674951	118675002	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.4960
chr4	137617306	137617379	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr18	44888291	44888316	protein_coding	Mcc	intron	ENSMUSG00000071856	ProperStrand	21	1	-10.0565
chr7	12930799	12930839	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr3	9428345	9428361	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	13	1	-14.5695
chr2	9061744	9061844	SINE	B4A	B4	chr2B4A9061656	NonProperStrand	1	chr2	9061943	9062033	Simple_repeat	(GA)n	Simple_repeat	chr2(GA)n9061954	NonProperStrand	1	1	-inf
chr9	100940995	100941072	LTR	RMER19B	ERVK	chr9RMER19B100940832	NonProperStrand	1	chr9	100933594	100933653	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	1	-inf
chr5	65629262	65629325	protein_coding	Wdr19	intron	ENSMUSG00000037890	NonProperStrand	28	chr13	44869928	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.9804
chr12	16580892	16589740	protein_coding	Lpin1	intron	ENSMUSG00000020593	ProperStrand	65	chr7	111076128	111076214	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	2	-17.4641
chr5	140353892	140353949	SINE	B4	B4	chr5B4140353890	NonProperStrand	2	chr17	39843375	39843467	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr2	121777506	121777592	LTR	RMER6A	ERVK	chr2RMER6A121777163	NonProperStrand	1	chr2	121790397	121790458	protein_coding	Ctdspl2	intron	ENSMUSG00000033411	NonProperStrand	29	1	-inf
chr5	132021119	132021209	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr15	82174780	82174880	protein_coding	Fam109b	utr3	ENSMUSG00000049687	ProperStrand	22	2	-14.6729
chr13	104089537	104089610	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	chr13	97190554	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.5049
chr9	123461930	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	56115804	56115829	protein_coding	Shd	utr3	ENSMUSG00000039154	NonProperStrand	1	1	-inf
chr5	142960529	142960589	Satellite	ZP3AR	Satellite	chr5ZP3AR142959989	ProperStrand	2	chr9	123462005	123462075	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847162	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	83715289	83719424	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int83714337	ProperStrand	6	1	-3.9545
chr15	62206570	62206639	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr7	24983976	24984049	protein_coding	Zfp111	exon	ENSMUSG00000087598	ProperStrand	11	1	-9.6561
chr19	7468502	7468558	LTR	RLTR23	ERV1	chr19RLTR237468428	NonProperStrand	1	chr19	7476287	7476370	SINE	B1_Mus2	Alu	chr19B1_Mus27476242	NonProperStrand	2	1	-inf
chr9	84508239	84508339	LINE	Lx8	L1	chr9Lx884508177	ProperStrand	1	chr9	84508434	84508524	LINE	Lx8	L1	chr9Lx884508334	ProperStrand	1	1	-inf
chr10	44341608	44341635	LINE	L1Md_F2	L1	chr10L1Md_F244341223	NonProperStrand	1	chr2	156672800	156672831	protein_coding-noncoding	Tgif2	utr5	ENSMUSG00000062175	ProperStrand	1	1	-inf
chr8	119905987	119906003	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	chr5	125296844	125296969	protein_coding	Dnahc10	intron	ENSMUSG00000038011	NonProperStrand	81	1	-9.6487
chr8	43295833	43295892	LINE	L1_Mus1	L1	chr8L1_Mus143295759	ProperStrand	29	chr8	123103044	123103083	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	1	-10.9041
chr17	39846437	39846474	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	107095714	107095834	SINE	B2_Mm1a	B2	chr8B2_Mm1a107095639	NonProperStrand	1	1	-inf
chr13	20107704	20107763	LINE	Lx8	L1	chr13Lx820106990	NonProperStrand	2	chr13	20105129	20105166	LTR	RMER5	ERV1	chr13RMER520104756	NonProperStrand	2	1	-19.8939
chr17	50420131	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr9	40200235	40200318	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-6.0273
chr11	109011648	109011678	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	mmu-miR-7667-5p	2	22	miRNA	mmu-miR-7667-5p	.	mmu-miR-7667-5p	NonProperStrand	2	1	-13.5345
chr9	123461882	123462185	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	86138032	86141734	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	7	-8.2898
chr12	72917516	72917666	LTR	ORR1B1	MaLR	chr12ORR1B172917531	ProperStrand	2	chr12	72917404	72917504	SINE	ID_B1	B4	chr12ID_B172917344	ProperStrand	6	2	-inf
chr17	39847853	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	5162336	5162366	LTR	MuRRS4-int	ERV1	chr1MuRRS4-int5161337	ProperStrand	1	1	-inf
chr17	39846580	39846685	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	39384413	39384431	LTR	IAPEz-int	ERVK	chr2IAPEz-int39383001	NonProperStrand	4	1	-3.6552
chr12	67667940	67668030	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	chr4	112618414	112618514	protein_coding	Skint6	intron	ENSMUSG00000087194	NonProperStrand	4	1	-17.2920
chrX	11013544	11013641	LTR	LTR16B2	ERVL	chrXLTR16B211013251	ProperStrand	1	chr16	87490535	87490555	protein_coding	Cct8	intron	ENSMUSG00000025613	ProperStrand	46	1	-inf
chr18	24906479	24906567	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	chr6	124449889	124449905	protein_coding	C1rl	intron	ENSMUSG00000038527	ProperStrand	1	1	-inf
chr9	21908889	21908933	protein_coding	Cnn1	intron	ENSMUSG00000001349	ProperStrand	1	chr9	114714445	114714523	protein_coding	Cmtm8	intron	ENSMUSG00000041012	NonProperStrand	39	1	-inf
chr17	39847800	39847879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	47568948	47568991	protein_coding	1700001C19Rik	intron	ENSMUSG00000047150	ProperStrand	2	1	-5.4040
chr5	114851973	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr16	23110845	23110868	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-9.1739
chr4	121148236	121148310	LINE	L1_Mm	L1	chr4L1_Mm121148241	ProperStrand	5	chr17	39846430	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.8332
chr17	39843813	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	44869570	44923231	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	336	-inf
chr6	60429159	60429259	LINE	L1_Mm	L1	chr6L1_Mm60429134	ProperStrand	1	chr6	60429057	60429147	LINE	L1_Mus1	L1	chr6L1_Mus160428637	ProperStrand	1	1	-inf
chr7	89954981	89955548	LINE	Lx5	L1	chr7Lx589954450	ProperStrand	3	chr7	89955553	89956293	LINE	Lx5	L1	chr7Lx589955276	NonProperStrand	2	1	-20.2824
chr2	81615888	81615978	LINE	L1_Mus3	L1	chr2L1_Mus381612144	ProperStrand	1	chr17	35384420	35384520	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	1	-inf
chr15	103243769	103243985	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	chr1	189911947	189911995	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	103	1	-10.6847
chr5	138977212	138979178	LTR	MYSERV6-int	ERVK	chr5MYSERV6-int138978778	NonProperStrand	1	chr6	3201476	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr19	46083767	46084035	lincRNA	4930505N22Rik	intron	ENSMUSG00000090325	ProperStrand	37	chr6	86375523	86375569	protein_coding	Tia1	intron	ENSMUSG00000071337	ProperStrand	14	1	-15.9624
chr17	39847559	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	22150566	22150595	LTR	RMER16-int	ERVK	chr3RMER16-int22150512	NonProperStrand	1	1	-inf
chr8	71747035	71747157	LINE	Lx5	L1	chr8Lx571745318	NonProperStrand	4	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr17	39848362	39848413	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	4302563	4302602	protein_coding	Aasdhppt	exon	ENSMUSG00000025894	ProperStrand	10	1	-4.7139
chr10	75663397	75663487	LTR	MTC-int	MaLR	chr10MTC-int75663365	ProperStrand	12	chr10	75663287	75663387	LTR	MTC	MaLR	chr10MTC75663169	ProperStrand	2	2	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr8	13876096	13876160	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	1	1	-inf
chr19	37968423	37968447	LINE	L1MB3	L1	chr19L1MB337968124	ProperStrand	1	chr1	136903017	136903076	protein_coding	Lgr6	intron	ENSMUSG00000042793	ProperStrand	106	1	-inf
chr2	53145327	53145659	LINE	L1VL4	L1	chr2L1VL453145206	NonProperStrand	2	chr17	39847274	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr5	114851974	114852413	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	5	-16.1702
chr11	4179531	4179562	lincRNA	Gm11959	intron	ENSMUSG00000085559	ProperStrand	18	chr13	44869596	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.8673
chr11	60111204	60111266	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	chr5	5666922	5666938	protein_coding	Steap2	utr3	ENSMUSG00000015653	ProperStrand	10	1	-13.3570
chr18	63078741	63078757	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr13	109348043	109348172	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-9.3081
chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	78377548	78377618	SINE	B1_Mur1	Alu	chr9B1_Mur178377543	ProperStrand	3	1	-4.3512
chr2	22744886	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	31768700	31768788	protein_coding	Dlg1	intron	ENSMUSG00000022770	ProperStrand	104	1	-5.7245
chr18	85698192	85698213	LINE	Lx8	L1	chr18Lx885698131	NonProperStrand	5	chr17	39847128	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr17	29354316	29354343	protein_coding	Cpne5	intron	ENSMUSG00000024008	NonProperStrand	18	chr9	123461848	123461919	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.2529
chr2	22744855	22744926	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	18533252	18533333	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	1	-8.0657
chr18	38739692	38739751	LTR	MLT1L	MaLR	chr18MLT1L38739526	NonProperStrand	1	chr18	38788357	38788414	protein_coding	Arhgap26	intron	ENSMUSG00000036452	ProperStrand	171	1	-inf
chr1	35125898	35125915	LINE	L1_Mus1	L1	chr1L1_Mus135125887	ProperStrand	1	chr11	100584311	100584581	protein_coding	Rab5c	intron	ENSMUSG00000019173	ProperStrand	39	1	-inf
chr1	63446357	63446407	LTR	MTA_Mm	MaLR	chr1MTA_Mm63446338	NonProperStrand	1	chr1	63447787	63447847	SINE	B1_Mur2	Alu	chr1B1_Mur263447779	NonProperStrand	1	1	-inf
chr1	168311800	168311900	protein_coding	Tada1	intron	ENSMUSG00000026563	NonProperStrand	6	chr17	66120406	66120495	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	80	1	-16.2426
chr9	36296229	36296261	LINE	L1Md_A	L1	chr9L1Md_A36294842	ProperStrand	2	chr11	4702062	4702184	protein_coding	Nf2	intron	ENSMUSG00000009073	ProperStrand	20	1	-20.4416
chr6	49085342	49085390	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	ProperStrand	101	chr10	127484104	127484198	protein_coding	Naca	intron	ENSMUSG00000061315	ProperStrand	14	1	-13.9400
chrX	8012103	8012204	LINE	L1Md_A	L1	chrXL1Md_A8012042	NonProperStrand	2	chr17	39846755	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr1	174552698	174552831	LINE	Lx3C	L1	chr1Lx3C174552378	ProperStrand	1	chr17	45760824	45760843	SINE	B1_Mur4	Alu	chr17B1_Mur445760812	NonProperStrand	2	1	-inf
chr17	39847173	39847221	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	127569259	127569297	Simple_repeat	(T)n	Simple_repeat	chr8(T)n127569264	ProperStrand	1	1	-inf
chr16	33047628	33047694	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr9	53801933	53802027	protein_coding	Elmod1	intron	ENSMUSG00000041986	NonProperStrand	34	1	-14.8669
chr3	138755896	138756036	LINE	Lx8	L1	chr3Lx8138754627	ProperStrand	6	chr15	10603721	10603813	protein_coding	Rai14	intron	ENSMUSG00000022246	NonProperStrand	12	3	-inf
chr15	79692145	79692220	LTR	RLTR33	ERVK	chr15RLTR3379691868	ProperStrand	1	chr15	79693564	79693599	SINE	B3	B2	chr15B379693384	NonProperStrand	1	1	-inf
chr10	127064249	127064285	SINE	B1_Mur2	Alu	chr10B1_Mur2127064201	ProperStrand	10	chr9	54886507	54886542	protein_coding	Chrnb4	intron	ENSMUSG00000035200	NonProperStrand	17	1	-18.1856
chr16	35981616	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	1	-10.1361
chr8	13345770	13345826	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.9470
chr1	161243685	161243717	protein_coding	Rfwd2	intron	ENSMUSG00000040782	NonProperStrand	36	chr11	68362465	68362563	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-11.1485
chr6	72749786	72749806	LTR	ORR1D2-int	MaLR	chr6ORR1D2-int72749555	ProperStrand	1	chr11	67064023	67064110	protein_coding	Myh4	exon	ENSMUSG00000057003	ProperStrand	7	1	-inf
chr17	39847636	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	58317145	58317228	lincRNA	4930461G14Rik	exon	ENSMUSG00000086516	ProperStrand	3	1	-4.3512
chr11	102877630	102877648	lincRNA	Gm17536	intron	ENSMUSG00000091056	ProperStrand	10	chr13	29331720	29331858	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	2	-18.2415
chr1	163833933	163833999	SINE	B1_Mus1	Alu	chr1B1_Mus1163833918	NonProperStrand	2	chr14	18815988	18816044	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	2	-inf
chr10	52294235	52294301	LINE	L1_Mur3	L1	chr10L1_Mur352294233	ProperStrand	1	chr17	39846831	39846887	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	40258543	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr8	25716851	25716868	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	40	1	-6.1537
chr11	95845612	95845659	protein_coding	Igf2bp1	intron	ENSMUSG00000013415	NonProperStrand	13	chr2	130278015	130278087	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	1	-13.5582
chr18	41903747	41903847	LTR	RMER17B	ERVK	chr18RMER17B41903270	NonProperStrand	5	chr18	41910050	41910140	SINE	AmnSINE1	SINE	chr18AmnSINE141909963	NonProperStrand	11	4	-inf
chr7	101822835	101822877	LINE	L1Md_F2	L1	chr7L1Md_F2101820937	NonProperStrand	30	chr16	36042231	36042318	protein_coding	Wdr5b	exon	ENSMUSG00000034379	NonProperStrand	1	1	-inf
chr6	87997228	87997259	SINE	B1_Mur4	Alu	chr6B1_Mur487997219	ProperStrand	15	chr12	84983175	84983296	protein_coding	Rbm25	intron	ENSMUSG00000010608	ProperStrand	19	1	-17.1442
chr14	65175443	65175512	SINE	B1_Mur3	Alu	chr14B1_Mur365175345	NonProperStrand	1	chr2	109989880	109989959	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	1	-inf
chrX	73927940	73928325	LINE	L1_Mus2	L1	chrXL1_Mus273927702	ProperStrand	4	chr17	39847221	39847259	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr10	78315505	78315535	LTR	MTC	MaLR	chr10MTC78315338	ProperStrand	1	chr17	39847273	39847352	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr6	3201478	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	8768646	8769001	SINE	B3	B2	chr19B38768623	NonProperStrand	1	1	-inf
chr1	36077475	36077562	SINE	B1_Mm	Alu	chr1B1_Mm36077487	ProperStrand	2	chr9	59672144	59672191	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-13.7270
chr1	124288351	124288441	SINE	B3A	B2	chr1B3A124288224	ProperStrand	1	chr1	124288505	124288605	SINE	B4A	B4	chr1B4A124288444	ProperStrand	1	1	-inf
chr8	69902188	69902309	LINE	Lx7	L1	chr8Lx769901998	NonProperStrand	2	chr17	39843031	39843052	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	1	-12.8014
chr17	39847230	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	31564463	31564500	protein_coding	Ift172	intron	ENSMUSG00000038564	NonProperStrand	9	1	-3.1539
chr11	76398422	76398518	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	chr7	16826642	16828691	protein_coding	Gpr77	intron	ENSMUSG00000074361	NonProperStrand	6	1	-14.0718
chr3	80382874	80382974	LTR	RLTR24	ERV1	chr3RLTR2480382828	ProperStrand	1	chr3	80383188	80383278	Simple_repeat	(TA)n	Simple_repeat	chr3(TA)n80383141	NonProperStrand	1	1	-inf
chr5	146261005	146261048	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	105679536	105679586	protein_coding	Adora3	intron	ENSMUSG00000000562	NonProperStrand	13	1	-8.1236
chr17	39843434	39843481	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr18	34453456	34453493	protein_coding	Apc	intron	ENSMUSG00000005871	NonProperStrand	35	1	-3.5324
chr16	33818191	33818291	protein_coding	Muc13	intron	ENSMUSG00000022824	ProperStrand	3	chr16	35312072	35312162	protein_coding	Sec22a	utr3	ENSMUSG00000034473	NonProperStrand	3	1	-20.2168
chr18	27246303	27246393	LINE	L1_Mur3	L1	chr18L1_Mur327245962	NonProperStrand	1	chr18	27246534	27246634	LINE	Lx3_Mus	L1	chr18Lx3_Mus27246523	NonProperStrand	1	1	-inf
chr1	39923112	39923178	LTR	RMER17B	ERVK	chr1RMER17B39923069	NonProperStrand	10	chr1	39922954	39923015	SINE	B3	B2	chr1B339922907	ProperStrand	1	1	-inf
chr13	21579220	21579320	LTR	RLTR25A	ERVK	chr13RLTR25A21578886	ProperStrand	1	chr13	21579582	21579672	LTR	RMER2	ERV1	chr13RMER221579513	NonProperStrand	1	1	-inf
chr12	96841300	96841390	LINE	L1_Mus1	L1	chr12L1_Mus196841186	NonProperStrand	1	chr12	96841010	96841110	SINE	MIRb	MIR	chr12MIRb96841012	NonProperStrand	1	1	-inf
chr4	24495860	24495960	protein_coding	Mms22l	intron	ENSMUSG00000045751	NonProperStrand	2	chr2	162405749	162405785	protein_coding	Ptprt	intron	ENSMUSG00000053141	NonProperStrand	55	1	-19.1124
chrX	63998903	63999003	LINE	Lx4B	L1	chrXLx4B63997790	ProperStrand	1	chrX	147673757	147673847	pseudogene	Wnk3-ps	.	ENSMUSG00000041245	ProperStrand	1	1	-inf
chr12	57436944	57437044	protein_coding	Mbip	intron	ENSMUSG00000021028	NonProperStrand	9	chr2	32961799	32962098	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-12.7870
chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr10	67010962	67011008	protein_coding	Ado	exon	ENSMUSG00000057134	NonProperStrand	3	1	-10.7726
chr17	93340328	93340391	LTR	ETnERV-int	ERVK	chr17ETnERV-int93340228	NonProperStrand	4	chr17	39847659	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr16	71308321	71308421	LINE	L1Md_T	L1	chr16L1Md_T71308063	ProperStrand	1	chr4	50469011	50469101	LINE	Lx8	L1	chr4Lx850468783	NonProperStrand	1	1	-inf
chr17	39848598	39848701	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr16	63159550	63159569	SINE	B4A	B4	chr16B4A63159555	ProperStrand	1	1	-inf
chr8	70203013	70203073	LINE	Lx7	L1	chr8Lx770202590	ProperStrand	2	chr11	51843353	51843403	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	1	-17.4998
chr10	115006421	115006511	protein_coding	Lgr5	intron	ENSMUSG00000020140	NonProperStrand	7	chr10	115007160	115007260	protein_coding	A930009A15Rik	utr5	ENSMUSG00000092210	ProperStrand	1	1	-inf
chr8	72352869	72352959	protein_coding	Lpar2	utr3	ENSMUSG00000031861	NonProperStrand	35	chr12	22707344	22707444	pseudogene	Gm20472	.	ENSMUSG00000073166	NonProperStrand	6	1	-18.0106
chr1	179156544	179156650	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr11	8462161	8462205	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	1	-4.7972
chr17	39847264	39847295	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	11604979	11606060	LTR	MTE2a-int	MaLR	chr4MTE2a-int11604809	ProperStrand	2	1	-6.5615
chr15	34284492	34284558	protein_coding	Matn2	intron	ENSMUSG00000022324	ProperStrand	45	chr3	142260340	142260391	protein_coding	Gbp1	intron	ENSMUSG00000028269	NonProperStrand	9	1	-16.5254
chr5	131830747	131830804	LINE	Lx5	L1	chr5Lx5131830100	NonProperStrand	2	chr17	39846955	39847030	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr8	31149915	31149970	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr13	97190562	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6409
chr1	35430451	35430541	LINE	L1_Mus4	L1	chr1L1_Mus435430457	ProperStrand	1	chr1	35430257	35430357	SINE	B2_Mm2	B2	chr1B2_Mm235430282	NonProperStrand	1	1	-inf
chr8	87530004	87530053	SINE	B3	B2	chr8B387529987	ProperStrand	1	chr8	87531923	87531962	protein_coding	Best2	intron	ENSMUSG00000052819	NonProperStrand	3	1	-inf
chr9	78480033	78480112	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr7	99441184	99441200	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-3.0889
chr2	178043541	178043605	protein_coding	Phactr3	intron	ENSMUSG00000027525	ProperStrand	26	chr17	17578781	17578847	protein_coding	Lix1	intron	ENSMUSG00000047786	NonProperStrand	10	1	-17.3899
chr16	35981615	35981644	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	4	-14.2210
chr17	35935143	35935258	LTR	ORR1A3	MaLR	chr17ORR1A335935024	ProperStrand	2	chr17	35836690	35836711	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	1	-16.7631
chr11	119915107	119915171	SINE	B2_Mm2	B2	chr11B2_Mm2119915039	NonProperStrand	6	chr11	119913937	119913991	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n119913930	ProperStrand	6	6	-inf
chr12	62018462	62018552	LINE	Lx2B	L1	chr12Lx2B62017166	ProperStrand	1	chr12	62018562	62018661	SINE	B1_Mus1	Alu	chr12B1_Mus162018577	NonProperStrand	1	1	-inf
chr10	77377316	77430005	protein_coding-noncoding	Trpm2	utr3	ENSMUSG00000009292	ProperStrand	8	chr10	77392875	77429891	protein_coding	Trpm2	exon	ENSMUSG00000009292	ProperStrand	44	7	-inf
chr17	39846719	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	35650989	35651007	SINE	PB1D10	Alu	chr13PB1D1035650975	ProperStrand	2	1	-5.3533
chr1	136364891	136364970	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr9	118674949	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	6	-20.9307
chr17	39846460	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	155328605	155328654	protein_coding-noncoding	Ggt7	utr3	ENSMUSG00000027603	ProperStrand	1	1	-inf
chr11	12423739	12423817	LINE	L1Md_F2	L1	chr11L1Md_F212423138	ProperStrand	2	chr11	12422889	12422944	LTR	ORR1A3	MaLR	chr11ORR1A312422736	NonProperStrand	1	1	-inf
chr17	39846580	39846662	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	100959215	100959232	protein_coding	Fam134c	utr3	ENSMUSG00000017802	NonProperStrand	2	1	-5.3533
chr11	31892631	31892721	LTR	RLTR14	ERV1	chr11RLTR1431892526	ProperStrand	1	chr11	31892427	31892527	SINE	B4A	B4	chr11B4A31892392	NonProperStrand	1	1	-inf
chr8	107383716	107383802	LINE	L1Md_T	L1	chr8L1Md_T107381590	NonProperStrand	1	chr8	107365101	107365177	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n107365119	ProperStrand	1	1	-inf
chr2	34687883	34687935	LTR	MMERVK10C-int	ERVK	chr2MMERVK10C-int34687028	ProperStrand	1	chr4	132310692	132310769	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-inf
chr19	5802582	5802672	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	75021673	75021773	protein_coding	Myo5a	intron	ENSMUSG00000034593	ProperStrand	44	1	-5.0369
chr18	56740010	56740711	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	96	chr11	48800375	48800474	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-8.3286
chr6	62695101	62695191	LINE	L1Md_F2	L1	chr6L1Md_F262694555	ProperStrand	1	chr6	62695698	62695798	LINE	L1Md_F2	L1	chr6L1Md_F262695612	ProperStrand	1	1	-inf
chr2	22744879	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr3	86751194	86751283	LTR	RMER19B	ERVK	chr3RMER19B86751124	ProperStrand	2	1	-14.2535
chr2	25210556	25210629	protein_coding-noncoding	Dpp7	utr3	ENSMUSG00000026958	ProperStrand	1	chr9	123461824	123461907	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	97589893	97589993	protein_coding	Bace2	intron	ENSMUSG00000040605	NonProperStrand	2	chr12	109375694	109375784	protein_coding	Setd3	intron	ENSMUSG00000056770	ProperStrand	4	2	-inf
chr1	16898292	16898356	LINE	L1_Mm	L1	chr1L1_Mm16897689	ProperStrand	3	chr17	39846378	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr1	122357166	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr1	71599605	71599686	SINE	PB1D10	Alu	chr1PB1D1071599627	ProperStrand	1	1	-inf
chr13	73846050	73846150	antisense	5430425J12Rik	.	ENSMUSG00000021566	NonProperStrand	4	chr13	73829191	73829282	protein_coding	Slc6a19	intron	ENSMUSG00000021565	ProperStrand	7	3	-inf
chr4	134108298	134109573	SINE	B1F2	Alu	chr4B1F2134108266	NonProperStrand	2	chr4	134102594	134108287	protein_coding	Sepn1	intron	ENSMUSG00000050989	NonProperStrand	8	2	-inf
chr10	40238082	40238182	SINE	ID_B1	B4	chr10ID_B140238072	ProperStrand	1	chr10	40238222	40238312	SINE	MIR	MIR	chr10MIR40238224	ProperStrand	1	1	-inf
chr7	34144441	34144515	LINE	L1Md_F2	L1	chr7L1Md_F234144213	NonProperStrand	9	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.9531
chr14	99246378	99246478	SINE	B4A	B4	chr14B4A99246271	NonProperStrand	1	chr17	70963685	70963775	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr7	112451671	112451761	LTR	MYSERV6-int	ERVK	chr7MYSERV6-int112451647	ProperStrand	1	chr7	112451540	112451639	SINE	B1_Mur4	Alu	chr7B1_Mur4112451539	ProperStrand	1	1	-inf
chr2	156827611	156827640	protein_coding	Dsn1	intron	ENSMUSG00000027635	ProperStrand	19	chr10	94741782	94741857	protein_coding	Cradd	intron	ENSMUSG00000045867	NonProperStrand	36	1	-15.3985
chr17	39846462	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	33052806	33052926	SINE	B1_Mur3	Alu	chr4B1_Mur333052806	ProperStrand	1	1	-inf
chr7	24811820	24811887	LINE	L1Md_A	L1	chr7L1Md_A24811221	NonProperStrand	2	chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	150201456	150201513	LINE	L1Md_F2	L1	chr2L1Md_F2150201317	NonProperStrand	1	chr2	150204861	150204922	pseudogene	Gm14126	.	ENSMUSG00000083077	NonProperStrand	3	1	-inf
chr10	81180666	81180970	SINE	B3	B2	chr10B381180806	NonProperStrand	81	chr10	81181588	81182298	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	4	-20.1133
chr5	93162258	93167541	processed_transcript	Gm20500	.	ENSMUSG00000092266	ProperStrand	7	chr5	93165359	93173504	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	7	-inf
chr2	25222806	25222856	SINE	B1_Mm	Alu	chr2B1_Mm25222725	NonProperStrand	7	chr2	167060892	167060932	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	2	-inf
chr17	39846750	39846813	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	74356630	74356715	protein_coding-noncoding	Ahrr	utr3	ENSMUSG00000021575	NonProperStrand	3	1	-4.3017
chr10	42241152	42241267	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	chr4	11167115	11167154	protein_coding	Ints8	intron	ENSMUSG00000040738	NonProperStrand	55	1	-10.0388
chr12	110535936	110535973	LINE	Lx	L1	chr12Lx110535784	NonProperStrand	13	chr12	110535544	110535614	LTR	ORR1B1	MaLR	chr12ORR1B1110535447	ProperStrand	3	1	-22.9476
chr12	59040478	59040523	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr14	65851661	65851749	protein_coding	Fzd3	intron	ENSMUSG00000007989	NonProperStrand	34	1	-11.1760
chr8	104234884	104234976	LINE	L1Md_F2	L1	chr8L1Md_F2104234661	NonProperStrand	1	chr19	23147348	23147387	lincRNA	C330002G04Rik	intron	ENSMUSG00000087169	NonProperStrand	149	1	-inf
chr1	153456671	153456738	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	chr13	9610788	9610846	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-8.3542
chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr13	17480286	17480345	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	1	-12.3766
chr2	112262527	112262581	LTR	MERVL-int	ERVL	chr2MERVL-int112257458	NonProperStrand	7	chr5	142905652	142905689	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-12.6982
chr17	39848534	39848597	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	97010161	97010345	SINE	B3	B2	chr15B397010159	NonProperStrand	2	1	-8.7208
chr12	111371158	111371280	SINE	B1_Mus2	Alu	chr12B1_Mus2111371180	NonProperStrand	1	chr17	50420126	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-inf
chr1	156617251	156617316	LINE	L1Md_F2	L1	chr1L1Md_F2156615712	NonProperStrand	3	chr7	103550788	103550885	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-18.9265
chr17	33913296	33913386	protein_coding	Angptl4	intron	ENSMUSG00000002289	NonProperStrand	17	chr19	44303424	44303524	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	1	-12.3910
chr4	149019315	149019382	protein_coding	Clstn1	intron	ENSMUSG00000039953	NonProperStrand	81	chr5	103230465	103230482	protein_coding	Arhgap24	intron	ENSMUSG00000057315	ProperStrand	12	1	-14.7041
chr15	82894128	82894193	LINE	HAL1-3A_ME	L1	chr15HAL1-3A_ME82894138	ProperStrand	1	chr16	35981614	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-inf
chr11	88662205	88662295	Low_complexity	CT-rich	Low_complexity	chr11CT-rich88662219	NonProperStrand	3	chr11	88662061	88662161	SINE	B1_Mur4	Alu	chr11B1_Mur488662025	ProperStrand	4	3	-inf
chr11	40702434	40702501	LINE	L1Md_F2	L1	chr11L1Md_F240701085	ProperStrand	2	chr2	27679190	27679239	SINE	B3A	B2	chr2B3A27679094	ProperStrand	1	1	-inf
chr15	79827350	79827377	protein_coding	Pdgfb	utr3	ENSMUSG00000000489	ProperStrand	61	chr9	78479496	78479688	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-7.4742
chr17	28987325	28987415	SINE	B1_Mus1	Alu	chr17B1_Mus128987264	NonProperStrand	2	chr17	28987227	28987327	SINE	ID_B1	B4	chr17ID_B128987176	NonProperStrand	2	2	-inf
chr14	120284171	120284290	LINE	Lx8	L1	chr14Lx8120284196	ProperStrand	3	chr14	120284797	120284824	LTR	MTB_Mm	MaLR	chr14MTB_Mm120284600	NonProperStrand	6	2	-inf
chr17	39847810	39847848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	23370746	23370856	LTR	MT2A	ERVL	chr1MT2A23370410	NonProperStrand	1	1	-inf
chr11	58047717	58047794	LTR	MLT1F2	MaLR	chr11MLT1F258047635	ProperStrand	5	chr2	25203486	25203898	protein_coding	Man1b1	intron	ENSMUSG00000036646	ProperStrand	5	1	-inf
chr19	47239955	47240017	LTR	MTD-int	MaLR	chr19MTD-int47239805	NonProperStrand	1	chr11	120579162	120579207	protein_coding	Lrrc45	exon	ENSMUSG00000025145	NonProperStrand	47	1	-inf
chr1	166514863	166514963	LINE	L1MC4a	L1	chr1L1MC4a166514490	NonProperStrand	2	chr1	166515114	166515204	SINE	B3	B2	chr1B3166515034	ProperStrand	2	2	-inf
chr10	82162495	82162550	protein_coding	Hcfc2	intron	ENSMUSG00000020246	ProperStrand	29	chr10	82152974	82153023	protein_coding	Glt8d2	intron	ENSMUSG00000020251	NonProperStrand	24	1	-15.3555
chr1	135441505	135441607	LTR	LTR79	ERVL	chr1LTR79135441499	ProperStrand	2	chr19	28514668	28514714	protein_coding	Glis3	intron	ENSMUSG00000052942	ProperStrand	174	2	-inf
chr11	3520773	3520865	LTR	MTC-int	MaLR	chr11MTC-int3520159	NonProperStrand	11	chr11	3517706	3517806	LTR	ORR1A0	MaLR	chr11ORR1A03517478	ProperStrand	3	3	-inf
chr10	43394002	43394028	LTR	MLT1C	MaLR	chr10MLT1C43393925	ProperStrand	1	chr2	138267568	138267604	protein_coding	Btbd3	intron	ENSMUSG00000062098	ProperStrand	66	1	-inf
chr11	118973697	118973797	LTR	MTC	MaLR	chr11MTC118973443	NonProperStrand	1	chr11	118974078	118974168	LTR	ORR1C2	MaLR	chr11ORR1C2118974024	ProperStrand	1	1	-inf
chr19	7226562	7226631	protein_coding	Macrod1	intron	ENSMUSG00000036278	NonProperStrand	109	chr13	97190568	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.9820
chr3	129605058	129605170	protein_coding	Casp6	intron	ENSMUSG00000027997	ProperStrand	68	chr3	129532652	129605047	protein_coding	Gar1	intron	ENSMUSG00000028010	NonProperStrand	22	7	-inf
chr9	99664632	99664781	SINE	B1_Mus1	Alu	chr9B1_Mus199664597	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr12	78598006	78598081	LTR	MTD	MaLR	chr12MTD78597744	ProperStrand	1	chr2	163664756	163664829	SINE	MIR	MIR	chr2MIR163664724	NonProperStrand	1	1	-inf
chr18	28770859	28770959	LINE	L1Md_A	L1	chr18L1Md_A28769400	NonProperStrand	1	chr2	41439044	41439134	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-inf
chr8	73098936	73116485	protein_coding	Ell	utr3	ENSMUSG00000070002	NonProperStrand	19	chr8	73131839	73131929	protein_coding	Ssbp4	intron	ENSMUSG00000070003	ProperStrand	17	9	-19.7070
chrX	77583474	77583566	LTR	ORR1E	MaLR	chrXORR1E77583374	ProperStrand	6	chr9	123461991	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr6	3201487	3201505	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	27668942	27668977	LTR	RLTR1B-int	ERV1	chr7RLTR1B-int27668638	ProperStrand	3	1	-9.0398
chr18	34304586	34304676	LINE	L1_Mus3	L1	chr18L1_Mus334304446	ProperStrand	1	chr18	34304705	34306267	SINE	B1_Mus1	Alu	chr18B1_Mus134305528	NonProperStrand	1	1	-inf
chr13	60934397	60934497	LINE	L1_Mur3	L1	chr13L1_Mur360934000	ProperStrand	7	chrX	39289348	39289438	Other	RMER1A	Other	chrXRMER1A39289223	ProperStrand	1	1	-inf
chr8	31149904	31149955	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr9	45951814	45952014	protein_coding	Sik3	intron	ENSMUSG00000034135	NonProperStrand	65	1	-11.3601
chr11	6113406	6125418	protein_coding	Npc1l1	intron	ENSMUSG00000020447	ProperStrand	50	chr5	21641429	21641445	protein_coding	Reln	intron	ENSMUSG00000042453	ProperStrand	45	1	-12.9708
chr3	59181246	59181336	LTR	IAPEz-int	ERVK	chr3IAPEz-int59175066	ProperStrand	6	chr3	59181452	59181552	LTR	IAPLTR1a_Mm	ERVK	chr3IAPLTR1a_Mm59181474	ProperStrand	2	2	-inf
chr17	39847216	39847276	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	10575331	10575422	protein_coding	Sdhaf2	utr3	ENSMUSG00000024668	ProperStrand	7	1	-3.6430
chr13	112578190	112578262	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr5	100992905	100992940	protein_coding	Plac8	intron	ENSMUSG00000029322	ProperStrand	2	1	-11.5667
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr10	128083941	128084013	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	114	2	-10.6588
chr18	70471704	70471794	LINE	L1Md_T	L1	chr18L1Md_T70470982	NonProperStrand	1	chr18	70469690	70471685	LTR	RLTR19-int	ERVK	chr18RLTR19-int70469692	NonProperStrand	1	1	-inf
chr12	3302093	3302156	protein_coding	Rab10	intron	ENSMUSG00000020671	ProperStrand	66	chr5	148898593	148898672	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-10.8446
chr11	53201963	53202077	protein_coding	Aff4	intron	ENSMUSG00000049470	NonProperStrand	25	chr3	108581985	108582025	protein_coding	Aknad1	intron	ENSMUSG00000049565	NonProperStrand	220	1	-11.1880
chr10	7616563	7616663	LTR	MMERVK10C-int	ERVK	chr10MMERVK10C-int7615735	NonProperStrand	7	chr10	7616664	7616754	LTR	RLTR10C	ERVK	chr10RLTR10C7616671	NonProperStrand	6	6	-inf
chr17	88333654	88333754	LTR	RLTR9A	ERVK	chr17RLTR9A88333597	NonProperStrand	1	chr17	88333509	88333599	SINE	B3A	B2	chr17B3A88333495	NonProperStrand	1	1	-inf
chr9	123462101	123462139	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	129365400	129365428	protein_coding	Tmem39b	intron	ENSMUSG00000053730	ProperStrand	10	1	-4.3847
chr7	34205809	34205879	LINE	L1Md_F2	L1	chr7L1Md_F234202552	ProperStrand	46	chr17	39843729	39843815	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-3.4622
chr11	3917467	3917532	LTR	RLTR45-int	ERVK	chr11RLTR45-int3916230	NonProperStrand	3	chr12	106590019	106590043	lincRNA	2810011L19Rik	intron	ENSMUSG00000086023	ProperStrand	3	1	-20.2168
chr8	79127770	79127882	LTR	LTR69	ERVL	chr8LTR6979127556	NonProperStrand	2	chr7	111070679	111070695	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-20.1013
chr19	40494672	40494772	protein_coding	Sorbs1	intron	ENSMUSG00000025006	NonProperStrand	4	chr19	40697400	40697490	protein_coding	Entpd1	intron	ENSMUSG00000048120	NonProperStrand	3	1	-inf
chr9	110002889	110002974	protein_coding	Dhx30	intron	ENSMUSG00000032480	NonProperStrand	23	chr17	66119070	66119088	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	2	-inf
chr7	126563720	126564446	LINE	Lx5	L1	chr7Lx5126563485	NonProperStrand	1	chr8	123269578	123269658	protein_coding	Irf8	intron	ENSMUSG00000041515	NonProperStrand	26	1	-inf
chr8	18711963	18712073	protein_coding-noncoding	Mcph1	utr3	ENSMUSG00000039842	ProperStrand	17	chr8	18698030	18698061	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	2	-15.0293
chr17	28017731	28017848	protein_coding	Uhrf1bp1	intron	ENSMUSG00000039512	ProperStrand	171	chr7	113332845	113332862	protein_coding	Gvin1	intron	ENSMUSG00000045868	NonProperStrand	5	1	-15.0955
chrX	140297490	140297599	protein_coding	Dcx	utr3	ENSMUSG00000031285	ProperStrand	2	chr6	30852394	30852443	protein_coding	Tsga13	intron	ENSMUSG00000039032	ProperStrand	9	2	-inf
chr17	39847129	39847189	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	93012552	93012636	SINE	B1_Mur1	Alu	chr15B1_Mur193012557	ProperStrand	1	1	-inf
chr16	62702385	62702475	LINE	L1_Mus2	L1	chr16L1_Mus262701776	ProperStrand	2	chr8	106881126	106881226	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	1	-17.8488
chr16	35674680	35674770	DNA	Charlie2b	MER1_type	chr16Charlie2b35674644	NonProperStrand	1	chr16	36188787	36188887	LINE	L1MC4	L1	chr16L1MC436188722	NonProperStrand	1	1	-inf
chr17	39846745	39847497	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	43650235	43650251	antisense	Gm12473	.	ENSMUSG00000086043	ProperStrand	1	1	-inf
chr9	18773455	18773555	LINE	Lx2B	L1	chr9Lx2B18773163	NonProperStrand	1	chr9	18773724	18773814	SINE	B1_Mur4	Alu	chr9B1_Mur418773749	NonProperStrand	1	1	-inf
chr17	39847868	39847902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	94279295	94279378	LTR	RLTRETN_Mm	ERVK	chr6RLTRETN_Mm94279187	ProperStrand	2	1	-5.4040
chr8	114448550	114448598	protein_coding	Tmem231	intron	ENSMUSG00000031951	NonProperStrand	33	chr8	70895651	70895921	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-11.7722
chrX	73680666	73681009	LINE	L1VL2	L1	chrXL1VL273680879	NonProperStrand	4	chrX	73678679	73678726	LINE	Lx2	L1	chrXLx273678315	NonProperStrand	18	1	-20.2607
chr2	102829372	102829449	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr8	123554056	123554080	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-4.1432
chr14	54247468	54247507	LINE	L1_Mus4	L1	chr14L1_Mus454246061	ProperStrand	2	chr7	101991638	101991764	LINE	L1Md_A	L1	chr7L1Md_A101990806	NonProperStrand	14	1	-19.5799
chr11	115137698	115137788	protein_coding-noncoding	Fdxr	utr3	ENSMUSG00000018861	NonProperStrand	1	chr11	115138085	115138185	protein_coding	Fdxr	intron	ENSMUSG00000018861	NonProperStrand	1	1	-inf
chr3	133377668	133377722	LTR	MTD	MaLR	chr3MTD133377593	ProperStrand	1	chr3	133377468	133377534	SINE	B3	B2	chr3B3133377396	NonProperStrand	1	1	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	127700274	127700310	LTR	ORR1A3-int	MaLR	chr5ORR1A3-int127699768	ProperStrand	1	1	-inf
chr5	146260998	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	10042493	10042577	protein_coding	Itih2	intron	ENSMUSG00000037254	ProperStrand	40	1	-5.8562
chr4	56224288	56224378	DNA	RCHARR1	MER1_type	chr4RCHARR156224255	ProperStrand	1	chr4	56224138	56224238	Other	RMER1B	Other	chr4RMER1B56224150	ProperStrand	1	1	-inf
chr14	122562785	122562967	LTR	MLT1B	MaLR	chr14MLT1B122562859	NonProperStrand	3	chr14	122562966	122582695	protein_coding	Clybl	intron	ENSMUSG00000025545	ProperStrand	59	3	-inf
chr1	72400377	72400445	protein_coding	Xrcc5	intron	ENSMUSG00000026187	ProperStrand	76	chr8	123564363	123564403	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.7480
chr19	60782304	60790500	LINE	Lx5	L1	chr19Lx560781579	ProperStrand	2	chr17	39847673	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr4	70330934	70331013	LINE	L1_Mur2	L1	chr4L1_Mur270330330	NonProperStrand	1	chr17	39846453	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39843697	39843770	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	181068355	181068373	protein_coding	Rtel1	intron	ENSMUSG00000038685	NonProperStrand	15	1	-5.6278
chr9	109118689	109118789	LTR	MTB	MaLR	chr9MTB109118505	NonProperStrand	1	chr8	70350981	70351071	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-inf
chr13	44869578	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr9	37321288	37321353	protein_coding	BC024479	intron	ENSMUSG00000042138	NonProperStrand	16	1	-7.1067
chr2	64006613	64006713	LTR	ORR1A2	MaLR	chr2ORR1A264006569	ProperStrand	1	chr9	19657745	19657835	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr17	39846430	39846534	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	135467724	135467780	LTR	MLT1F1	MaLR	chr1MLT1F1135467699	NonProperStrand	1	1	-inf
chr2	129178368	129178386	LINE	L1Md_F2	L1	chr2L1Md_F2129176157	NonProperStrand	5	chr2	126644864	126644915	protein_coding	Trpm7	intron	ENSMUSG00000027365	ProperStrand	25	1	-19.3499
chr1	151889686	151889776	SINE	B1F1	Alu	chr1B1F1151889602	ProperStrand	1	chr1	151889937	151890037	SINE	MIR	MIR	chr1MIR151889958	NonProperStrand	1	1	-inf
chrX	12652453	12652543	protein_coding	Usp9x	intron	ENSMUSG00000031010	ProperStrand	9	chr2	60098398	60098498	protein_coding	Cd302	intron	ENSMUSG00000060703	ProperStrand	10	2	-inf
chr14	25866095	25866185	Low_complexity	CT-rich	Low_complexity	chr14CT-rich25866046	ProperStrand	9	chr14	25866190	25866290	SINE	ID_B1	B4	chr14ID_B125866217	NonProperStrand	2	2	-inf
chr16	29958463	29958563	LTR	ORR1A2	MaLR	chr16ORR1A229958478	ProperStrand	1	chr16	29958555	29958645	protein_coding	Gm1968	intron	ENSMUSG00000075286	ProperStrand	3	1	-inf
chr4	130555917	130555991	lincRNA	Gm12973	intron	ENSMUSG00000085804	NonProperStrand	45	chr4	130558803	130558867	lincRNA	A930031H19Rik	intron	ENSMUSG00000086262	ProperStrand	41	1	-13.3735
chr14	122387286	122451063	SINE	PB1D9	Alu	chr14PB1D9122410193	NonProperStrand	6	chr17	39843654	39843701	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-7.0670
chr17	39843826	39843916	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	117450861	117450961	SINE	B1_Mur4	Alu	chr4B1_Mur4117450828	ProperStrand	1	1	-inf
chr13	28659936	28660019	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	chr13	74446545	74446598	protein_coding	Pdcd6	intron	ENSMUSG00000021576	ProperStrand	6	1	-15.3296
chr13	43273820	43273891	LINE	L2	L2	chr13L243273696	ProperStrand	2	chr13	43292576	43292631	protein_coding	Gfod1	utr3	ENSMUSG00000051335	ProperStrand	41	2	-inf
chr4	23808626	23808716	LINE	Lx9	L1	chr4Lx923807952	ProperStrand	1	chr4	23808858	23808958	LINE	Lx9	L1	chr4Lx923808875	ProperStrand	1	1	-inf
chr2	59200976	59201043	SINE	B3A	B2	chr2B3A59200929	NonProperStrand	1	chr2	59187784	59187861	protein_coding	Pkp4	intron	ENSMUSG00000026991	ProperStrand	97	1	-inf
chr1	150419155	150419192	LINE	L1Md_T	L1	chr1L1Md_T150419146	NonProperStrand	1	chr17	39847736	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847440	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	111506367	111506383	protein_coding	Glipr1l1	intron	ENSMUSG00000020213	NonProperStrand	1	1	-inf
chr14	60219532	60219591	LTR	RLTR22_Mur	ERVK	chr14RLTR22_Mur60218627	ProperStrand	4	chr2	5293930	5293979	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.1399
chr7	55933533	55935799	LINE	L1_Mus2	L1	chr7L1_Mus255932466	NonProperStrand	8	chr16	36000188	36002844	protein_coding	Kpna1	utr5	ENSMUSG00000022905	ProperStrand	174	1	-14.0278
chr17	39848200	39848315	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	91929919	91929951	lincRNA	Gm13780	intron	ENSMUSG00000087197	ProperStrand	19	1	-3.4660
chr9	120573644	120574099	LTR	MTE2b	MaLR	chr9MTE2b120573676	NonProperStrand	9	chr2	105396584	105396684	antisense	Pax6os1	.	ENSMUSG00000086029	ProperStrand	19	1	-18.0438
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr15	102316872	102317112	protein_coding	Pcbp2	intron	ENSMUSG00000056851	ProperStrand	58	1	-6.0376
chr13	63300437	63300492	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	chr9	80133871	80133935	protein_coding	Myo6	intron	ENSMUSG00000033577	ProperStrand	37	1	-9.7993
chr10	127710200	127710217	protein_coding	Stat2	intron	ENSMUSG00000040033	ProperStrand	4	chr17	66113955	66114012	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-17.4519
chr17	39847084	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	27475055	27475090	SINE	B3	B2	chr2B327475023	ProperStrand	2	1	-6.5615
chr8	109233011	109233101	protein_coding	Tmco7	intron	ENSMUSG00000041949	ProperStrand	22	chr17	30470504	30470604	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-9.2605
chr17	39846618	39846971	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	85631731	85639132	protein_coding	Ptgr2	exon	ENSMUSG00000072946	ProperStrand	12	2	-3.1058
chr1	89511940	89512040	DNA	FordPrefect	Tip100	chr1FordPrefect89511658	NonProperStrand	1	chr1	89512096	89512186	SINE	PB1D10	Alu	chr1PB1D1089512096	NonProperStrand	1	1	-inf
chr9	107774705	107778013	LTR	ORR1A2-int	MaLR	chr9ORR1A2-int107776645	NonProperStrand	1	chr9	107778017	107782614	SINE	B1_Mus1	Alu	chr9B1_Mus1107779591	ProperStrand	1	1	-inf
chr17	4082123	4082194	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	66037807	66037826	protein_coding	Ttc21b	intron	ENSMUSG00000034848	ProperStrand	4	1	-13.3302
chr15	79535251	79535269	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	NonProperStrand	156	chr19	38185285	38185425	protein_coding	O3far1	intron	ENSMUSG00000054200	NonProperStrand	3	1	-16.4751
chr11	97781669	97781759	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr1	89870991	89871091	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	3	-inf
chr6	136804022	136804115	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	chr2	79292499	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-13.1361
chr16	48295317	48295417	SINE	B1_Mm	Alu	chr16B1_Mm48295326	ProperStrand	1	chr16	48295197	48295287	SINE	B1_Mus1	Alu	chr16B1_Mus148295170	NonProperStrand	1	1	-inf
chr12	80836496	80836553	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	chr10	72974666	72974685	sense_intronic	Gm15397	.	ENSMUSG00000085176	ProperStrand	2	1	-17.2967
chr14	16431172	16431190	LINE	L1VL4	L1	chr14L1VL416430893	ProperStrand	3	chr18	77775814	77777619	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-16.1884
chr7	5074785	5075176	LINE	Lx6	L1	chr7Lx65072678	NonProperStrand	8	chr7	5075175	5075206	SINE	B1_Mus1	Alu	chr7B1_Mus15075067	NonProperStrand	3	2	-inf
chr6	55048163	55050454	protein_coding-noncoding	Crhr2	utr3	ENSMUSG00000003476	NonProperStrand	14	chr11	113901597	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-13.4173
chrX	159592597	159592718	LTR	MTE2b	MaLR	chrXMTE2b159592502	NonProperStrand	1	chrX	159575064	159575086	SINE	B1F1	Alu	chrXB1F1159575019	ProperStrand	2	1	-inf
chr15	56858464	56858564	LINE	Lx5	L1	chr15Lx556858277	ProperStrand	1	chr15	56857859	56857949	LTR	MTE2a	MaLR	chr15MTE2a56857619	ProperStrand	1	1	-inf
chr8	113876284	113876384	protein_coding	Fa2h	intron	ENSMUSG00000033579	ProperStrand	1	chr8	112925681	112925771	protein_coding	Hydin	intron	ENSMUSG00000059854	ProperStrand	5	1	-inf
chr15	83065818	83065840	protein_coding	A4galt	intron	ENSMUSG00000047878	NonProperStrand	3	chr7	121989549	121989626	protein_coding	Insc	intron	ENSMUSG00000048782	NonProperStrand	66	1	-18.0910
chr5	64835160	64835250	SINE	ID_B1	B4	chr5ID_B164835125	NonProperStrand	1	chr5	116153394	116153496	protein_coding	Ccdc64	intron	ENSMUSG00000041609	NonProperStrand	6	1	-inf
chr12	28438113	28438203	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr16	17463081	17463181	protein_coding	Crkl	intron	ENSMUSG00000006134	NonProperStrand	3	1	-22.9476
chr5	31059451	31059561	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr13	97190561	97190583	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-5.1672
chr10	75859741	75859858	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	78	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-12.7657
chr17	39846573	39846602	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	68679096	68679113	protein_coding	Cd99l2	intron	ENSMUSG00000035776	NonProperStrand	3	1	-4.3017
chr10	91098130	91098227	LINE	Lx4A	L1	chr10Lx4A91097626	NonProperStrand	1	chr17	39847659	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	100766718	100766818	protein_coding-noncoding	Stat3	utr3	ENSMUSG00000004040	ProperStrand	2	chr11	100766921	100767011	protein_coding	Stat3	intron	ENSMUSG00000004040	ProperStrand	10	1	-20.4467
chr17	40486253	40486326	LINE	Lx4A	L1	chr17Lx4A40484947	ProperStrand	1	chr1	16101744	16101774	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	1	-inf
chr1	131573837	131573871	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	chr1	84183708	84183809	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	1	-7.1926
chr11	95968810	95968882	protein_coding	Calcoco2	exon	ENSMUSG00000006056	ProperStrand	64	chr11	96005641	96005719	protein_coding	Ttll6	intron	ENSMUSG00000038756	NonProperStrand	44	1	-12.5187
chr5	31192232	31192625	protein_coding-noncoding	Agbl5	utr5	ENSMUSG00000029165	NonProperStrand	1	chr5	31193004	31193094	protein_coding	Agbl5	exon	ENSMUSG00000029165	NonProperStrand	37	1	-inf
chr6	120817915	120817950	protein_coding	Bcl2l13	intron	ENSMUSG00000009112	NonProperStrand	37	chr3	90213201	90213247	protein_coding	Ints3	intron	ENSMUSG00000027933	NonProperStrand	20	1	-15.2395
chr13	73320338	73320413	LINE	Lx8	L1	chr13Lx873319740	ProperStrand	8	chr17	39847192	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr3	77608089	77608179	LINE	L1VL2	L1	chr3L1VL277607908	ProperStrand	1	chr3	77608557	77608657	LINE	L1_Mur1	L1	chr3L1_Mur177608431	ProperStrand	1	1	-inf
chr2	125605468	125611082	SINE	B1_Mus1	Alu	chr2B1_Mus1125611021	NonProperStrand	5	chr2	125602912	125605414	protein_coding	Secisbp2l	intron	ENSMUSG00000035093	ProperStrand	51	1	-17.6350
chr10	84551133	84551197	LTR	RLTR10	ERVK	chr10RLTR1084550902	NonProperStrand	1	chr5	146261175	146261228	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr14	27096051	27096170	LTR	RLTR18-int	ERVK	chr14RLTR18-int27096026	NonProperStrand	1	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr3	116410558	116410658	protein_coding	Slc35a3	intron	ENSMUSG00000027957	ProperStrand	15	chr3	116493129	116493219	protein_coding	Agl	intron	ENSMUSG00000033400	NonProperStrand	1	1	-inf
chr6	3201469	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	50420126	50420176	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	3	-3.7813
chr2	22744854	22744908	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	130240434	130240519	protein_coding	Gbas	intron	ENSMUSG00000029432	ProperStrand	48	1	-7.2526
chr5	50041297	50041397	LINE	L1Md_F2	L1	chr5L1Md_F250041143	NonProperStrand	1	chr5	50040965	50041055	SINE	ID_B1	B4	chr5ID_B150040947	ProperStrand	1	1	-inf
chr17	39846847	39846873	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	31981400	31981519	SINE	B2_Mm1a	B2	chr2B2_Mm1a31981425	NonProperStrand	1	1	-inf
chr6	29156252	29164621	protein_coding	Impdh1	intron	ENSMUSG00000003500	ProperStrand	15	chr9	123461928	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-6.1845
chr15	85076073	85076173	protein_coding	Fbln1	intron	ENSMUSG00000006369	ProperStrand	20	chr8	34950524	34950614	protein_coding	Rbpms	intron	ENSMUSG00000031586	ProperStrand	74	4	-inf
chr3	90365611	90365711	LTR	MT2B	ERVL	chr3MT2B90365600	NonProperStrand	4	chr3	90365510	90365600	SINE	ID_B1	B4	chr3ID_B190365494	NonProperStrand	4	4	-inf
chr3	81049692	81049799	DNA	MER63C	AcHobo	chr3MER63C81049709	ProperStrand	1	chr3	81050214	81050235	Simple_repeat	(TC)n	Simple_repeat	chr3(TC)n81050200	ProperStrand	1	1	-inf
chr17	39846940	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	103844182	103844209	protein_coding	Arf2	intron	ENSMUSG00000062421	NonProperStrand	5	1	-3.1907
chr8	71958670	71958741	LINE	L1_Mur2	L1	chr8L1_Mur271958338	ProperStrand	3	chr9	118674951	118675012	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr7	34165560	34165625	LTR	RMER16-int	ERVK	chr7RMER16-int34164899	NonProperStrand	1	chr7	34167910	34167969	LTR	RMER16-int	ERVK	chr7RMER16-int34166923	NonProperStrand	2	1	-inf
chr1	138507561	138507616	LTR	RLTR42-int	ERVK	chr1RLTR42-int138507494	NonProperStrand	1	chr16	34690771	34695595	protein_coding	Ccdc14	exon	ENSMUSG00000022833	ProperStrand	25	1	-inf
chr17	39846389	39846430	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	13566342	13566358	protein_coding	Tram1	intron	ENSMUSG00000025935	NonProperStrand	4	1	-3.6552
chr17	39845438	39845538	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	21695097	21695130	SINE	B2_Mm1a	B2	chr9B2_Mm1a21694979	NonProperStrand	2	1	-9.3724
chr7	116242973	116243020	LTR	MTE2a	MaLR	chr7MTE2a116242661	NonProperStrand	2	chr2	151546882	151546990	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	58	2	-inf
chr9	86084076	86084176	LINE	L1_Mus1	L1	chr9L1_Mus186083966	NonProperStrand	1	chr9	81952704	81952794	protein_coding	Mei4	intron	ENSMUSG00000043289	NonProperStrand	6	1	-inf
chr17	39847559	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	47101556	47101646	LTR	MTEb	MaLR	chr7MTEb47101551	NonProperStrand	1	1	-inf
chr3	36514221	36514321	LINE	L1M2	L1	chr3L1M236514227	ProperStrand	1	chr3	36514068	36514158	SINE	B3	B2	chr3B336514049	ProperStrand	1	1	-inf
chr11	72443804	72443904	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	chr2	5379247	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.4801
chr10	77161965	77161990	LTR	MTE-int	MaLR	chr10MTE-int77161436	NonProperStrand	1	chr10	77162079	77162202	SINE	B3	B2	chr10B377162076	NonProperStrand	1	1	-inf
chr19	4777902	4778008	SINE	B1_Mur3	Alu	chr19B1_Mur34777903	NonProperStrand	2	chr12	73087995	73088013	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	15	1	-22.6177
chr12	73087995	73088013	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	15	chr1	21035717	21035809	protein_coding	Tram2	intron	ENSMUSG00000041779	ProperStrand	58	1	-14.9113
chr13	60655182	60655225	LTR	MER34A	ERV1	chr13MER34A60655162	ProperStrand	1	chr17	39847436	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	128839045	128839114	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	chr19	45025643	45025722	protein_coding	Fam178a	intron	ENSMUSG00000036097	ProperStrand	54	1	-14.6797
chr8	72153646	72153729	LINE	Lx	L1	chr8Lx72150141	ProperStrand	4	chr17	39847636	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr1	171503076	171503120	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr7	97501797	97501883	protein_coding	Sytl2	intron	ENSMUSG00000030616	ProperStrand	31	1	-14.4539
chr11	62077193	62077234	protein_coding	Adora2b	intron	ENSMUSG00000018500	ProperStrand	2	chr11	62117713	62117800	protein_coding	Ttc19	intron	ENSMUSG00000042298	ProperStrand	15	1	-22.6177
chr17	47785985	47786085	protein_coding	Gm20517	intron	ENSMUSG00000023984	ProperStrand	54	chr17	47737252	47785990	protein_coding	Bysl	utr3	ENSMUSG00000023988	NonProperStrand	22	2	-inf
chr15	58778680	58778756	protein_coding	Mtss1	intron	ENSMUSG00000022353	ProperStrand	18	chr15	58743057	58743138	protein_coding	Tatdn1	intron	ENSMUSG00000050891	ProperStrand	4	1	-20.0512
chr3	9413396	9413415	lincRNA	C030034L19Rik	exon	ENSMUSG00000085362	NonProperStrand	8	chr2	75919870	75919989	protein_coding	Pde11a	intron	ENSMUSG00000075270	NonProperStrand	79	1	-15.6271
chr17	39846759	39846801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	130130365	130130465	LTR	RLTR14-int	ERV1	chr5RLTR14-int130129785	ProperStrand	1	1	-inf
chr14	97293121	97293211	LINE	Lx2	L1	chr14Lx297293081	NonProperStrand	1	chr14	97293207	97293307	LINE	Lx2	L1	chr14Lx297293204	NonProperStrand	1	1	-inf
chr2	146969543	146969983	LINE	L1Md_T	L1	chr2L1Md_T146968337	ProperStrand	1	chr17	39846759	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847165	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	31974470	31974569	LTR	IAPEz-int	ERVK	chr2IAPEz-int31974277	ProperStrand	3	1	-5.4882
chr7	143591874	143591974	LINE	L1MD	L1	chr7L1MD143591817	NonProperStrand	2	chr7	143592015	143592105	SINE	B4A	B4	chr7B4A143591988	NonProperStrand	3	2	-inf
chr5	146261005	146261069	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr12	70952967	70952985	lincRNA	4931403G20Rik	intron	ENSMUSG00000090912	ProperStrand	3	1	-11.3685
chr11	102568074	102568104	LTR	ERVL-B4-int	ERVL	chr11ERVL-B4-int102568082	NonProperStrand	5	chr4	132310239	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-14.8930
chr14	27104830	27104946	LTR	RMER17C-int	ERVK	chr14RMER17C-int27104696	ProperStrand	1	chr17	32272811	32272839	protein_coding	Notch3	intron	ENSMUSG00000038146	ProperStrand	60	1	-inf
chr18	41923501	41923527	LTR	MLT1K	MaLR	chr18MLT1K41923366	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr4	139216456	139216556	protein_coding	Tas1r2	intron	ENSMUSG00000028738	ProperStrand	90	chr1	92110375	92110465	protein_coding	Cxcr7	utr5	ENSMUSG00000044337	NonProperStrand	34	3	-21.5916
chr17	39847294	39847323	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	75859104	75859120	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n75859107	ProperStrand	3	1	-5.4882
chr7	47188565	47188603	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr1	63178854	63179289	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	1	-11.1516
chr4	137859978	137860068	LTR	RMER17C	ERVK	chr4RMER17C137859847	ProperStrand	1	chr4	137860087	137860187	SINE	B1_Mur1	Alu	chr4B1_Mur1137860092	NonProperStrand	1	1	-inf
chr3	141008018	141008118	LINE	L1Md_F2	L1	chr3L1Md_F2141008010	NonProperStrand	1	chr3	141341263	141341353	antisense	Gm15689	.	ENSMUSG00000089924	ProperStrand	1	1	-inf
chr17	23177819	23177838	LINE	Lx4A	L1	chr17Lx4A23176774	ProperStrand	1	chr17	20957743	20957829	LTR	MTA_Mm-int	MaLR	chr17MTA_Mm-int20957150	ProperStrand	1	1	-inf
chr2	89479254	89479354	LINE	L1Md_F2	L1	chr2L1Md_F289479204	ProperStrand	1	chr2	89395208	89395298	LTR	RLTR9E	ERVK	chr2RLTR9E89395040	NonProperStrand	1	1	-inf
chr17	39846812	39846912	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	53665120	53690850	protein_coding	Fsd1l	intron	ENSMUSG00000054752	ProperStrand	11	3	-5.3008
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr2	5379231	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.1749
chr14	74775224	74775278	LINE	L1_Mus1	L1	chr14L1_Mus174773449	ProperStrand	3	chr13	43285500	43285580	SINE	B1_Mm	Alu	chr13B1_Mm43285469	NonProperStrand	1	1	-inf
chr9	40804480	40804574	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr9	55218430	55218491	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	1	-6.9693
chr9	110281284	110281327	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr10	105238486	105238519	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-8.2299
chr18	35265723	35265747	SINE	B3A	B2	chr18B3A35265715	NonProperStrand	1	chr9	110281287	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr17	39847759	39847784	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	115835727	115835762	protein_coding	Tspan1	intron	ENSMUSG00000028699	NonProperStrand	1	1	-inf
chr17	39847603	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	86985404	86985488	LTR	BGLII_B	ERVK	chr6BGLII_B86985426	NonProperStrand	1	1	-inf
chr13	97190573	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr15	82841537	82841614	protein_coding	Nfam1	intron	ENSMUSG00000058099	ProperStrand	119	1	-3.8182
chr17	70963667	70963855	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	123461820	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	336	-inf
chr10	83415223	83415288	DNA	MER2	MER2_type	chr10MER283415214	ProperStrand	2	chr10	83413995	83414045	LTR	ORR1E	MaLR	chr10ORR1E83413869	NonProperStrand	7	1	-21.1088
chr14	83857724	83857824	LINE	L1Md_F	L1	chr14L1Md_F83856252	ProperStrand	1	chr14	83857957	83858046	LINE	L1Md_F	L1	chr14L1Md_F83857878	ProperStrand	1	1	-inf
chr9	65991297	65991397	SINE	B1F	Alu	chr9B1F65991228	ProperStrand	4	chr16	90225182	90226159	protein_coding	Sod1	intron	ENSMUSG00000022982	ProperStrand	43	4	-inf
chr2	173026537	173026637	LINE	Lx6	L1	chr2Lx6173026465	ProperStrand	13	chr2	173026395	173026485	SINE	B2_Mm2	B2	chr2B2_Mm2173026293	NonProperStrand	6	6	-inf
chr11	96955893	96956129	LINE	HAL1	L1	chr11HAL196955795	NonProperStrand	10	chr11	96956142	96956232	SINE	ID2	ID	chr11ID296956148	NonProperStrand	10	10	-inf
chr5	105781366	105781456	LINE	Lx7	L1	chr5Lx7105780743	ProperStrand	2	chr5	105781504	105781604	Low_complexity	T-rich	Low_complexity	chr5T-rich105781527	ProperStrand	8	2	-inf
chr18	50137041	50137141	LINE	Lx5	L1	chr18Lx550136995	NonProperStrand	2	chr18	50136886	50136976	LTR	RMER15	ERVL	chr18RMER1550136465	NonProperStrand	2	2	-inf
chr17	39846842	39846932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	132720346	132720446	LTR	MLT1H1	MaLR	chr2MLT1H1132720339	NonProperStrand	1	1	-inf
chr4	139265100	139265200	SINE	B1_Mur2	Alu	chr4B1_Mur2139265126	ProperStrand	2	chr4	139264966	139265056	SINE	ID_B1	B4	chr4ID_B1139264883	ProperStrand	2	2	-inf
chr12	72783838	72783911	LINE	L1_Rod	L1	chr12L1_Rod72783692	ProperStrand	2	chr7	141163439	141163463	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-17.2783
chr12	105828368	105829067	SINE	B4A	B4	chr12B4A105828237	ProperStrand	4	chr18	39598867	39598970	protein_coding	Nr3c1	intron	ENSMUSG00000024431	NonProperStrand	3	1	-inf
chr17	39846456	39846505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	101141088	101141114	LTR	RMER16-int	ERVK	chrXRMER16-int101141033	NonProperStrand	1	1	-inf
chr10	79895054	79895078	protein_coding	Tcf3	intron	ENSMUSG00000020167	ProperStrand	6	chrX	136170231	136170265	protein_coding	Rnf128	intron	ENSMUSG00000031438	NonProperStrand	7	1	-23.4069
chr7	55829400	55830912	LINE	L1_Mur1	L1	chr7L1_Mur155829820	NonProperStrand	2	chr9	123461931	123461971	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr8	88982526	88982645	LINE	L1Md_F2	L1	chr8L1Md_F288981748	NonProperStrand	1	chr8	88983678	88983713	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n88983684	NonProperStrand	1	1	-inf
chr17	39848299	39848353	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	83611078	83611133	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n83610934	NonProperStrand	1	1	-inf
chr17	39846439	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	133673302	133673406	SINE	B2_Mm2	B2	chr7B2_Mm2133673298	ProperStrand	1	1	-inf
chr10	77380022	77380094	protein_coding-noncoding	Trpm2	utr3	ENSMUSG00000009292	ProperStrand	8	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.2032
chr17	34039499	34039518	SINE	B1_Mm	Alu	chr17B1_Mm34039409	NonProperStrand	1	chr12	102668192	102668257	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-inf
chr9	113221584	113221684	LTR	MTEa	MaLR	chr9MTEa113221476	NonProperStrand	1	chr9	113221719	113221809	Low_complexity	CT-rich	Low_complexity	chr9CT-rich113221669	NonProperStrand	1	1	-inf
chr16	4617219	4617260	protein_coding	Pam16	exon	ENSMUSG00000014301	ProperStrand	15	chr4	136540486	136540593	protein_coding	Zbtb40	intron	ENSMUSG00000060862	NonProperStrand	45	1	-15.4217
chr17	39847744	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	75916903	75916993	protein_coding	Nrbp2	utr3	ENSMUSG00000075590	ProperStrand	6	2	-5.2646
chr8	48451523	48451613	lincRNA	4930448N21Rik	intron	ENSMUSG00000086634	ProperStrand	141	chr12	102802784	102802884	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-6.0724
chr2	144828180	144828199	LINE	L1_Mus1	L1	chr2L1_Mus1144828018	ProperStrand	1	chr17	39847736	39847787	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	49236483	49236599	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr12	78350923	78351026	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	14	-19.8471
chr4	121161433	121161523	LTR	RMER17D	ERVK	chr4RMER17D121161385	ProperStrand	1	chr16	13416257	13416357	protein_coding	Mkl2	utr3	ENSMUSG00000009569	ProperStrand	153	1	-inf
chr11	76481898	76481988	SINE	B1_Mus1	Alu	chr11B1_Mus176481867	NonProperStrand	2	chr11	76481774	76481874	SINE	B3A	B2	chr11B3A76481739	NonProperStrand	2	2	-inf
chr11	96940880	96940917	SINE	B1F	Alu	chr11B1F96940886	ProperStrand	1	chr6	54177364	54177456	protein_coding	Chn2	intron	ENSMUSG00000004633	ProperStrand	101	1	-inf
chr10	23785362	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.6769
chr2	101672245	101672345	protein_coding-noncoding	Prr5l	utr3	ENSMUSG00000032841	NonProperStrand	1	chr2	101672086	101672176	protein_coding	Prr5l	intron	ENSMUSG00000032841	NonProperStrand	22	1	-inf
chr2	109716921	109717011	LINE	L2	L2	chr2L2109716904	ProperStrand	1	chr2	109716726	109716826	SINE	B2_Mm2	B2	chr2B2_Mm2109716666	ProperStrand	1	1	-inf
chr9	17949569	17949659	LINE	Lx9	L1	chr9Lx917949585	NonProperStrand	1	chr9	17949264	17949364	LTR	IAPLTR1a_Mm	ERVK	chr9IAPLTR1a_Mm17949014	ProperStrand	1	1	-inf
chr3	31101084	31101120	SINE	ID_B1	B4	chr3ID_B131101057	NonProperStrand	1	chr11	86334206	86334290	protein_coding	Rps6kb1	intron	ENSMUSG00000020516	ProperStrand	34	1	-inf
chr12	67667953	67668043	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr1	79607166	79607266	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	10	1	-15.1183
chr7	120264447	120264537	SINE	B4A	B4	chr7B4A120264399	ProperStrand	1	chr4	44828298	44828398	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-inf
chr12	57755308	57755408	LINE	Lx7	L1	chr12Lx757754777	ProperStrand	1	chr12	57755633	57755723	LTR	MTA_Mm	MaLR	chr12MTA_Mm57755408	ProperStrand	1	1	-inf
chrX	61632620	61632710	DNA	Charlie25	MER1_type	chrXCharlie2561632342	ProperStrand	1	chrX	61523443	61523543	protein_coding	Slitrk4	utr3	ENSMUSG00000046699	NonProperStrand	1	1	-inf
chr2	130741913	130748777	protein_coding	Atrn	intron	ENSMUSG00000027312	NonProperStrand	36	chr3	130180926	130180943	protein_coding	Col25a1	intron	ENSMUSG00000058897	ProperStrand	31	1	-14.3963
chr3	58518601	58518671	lincRNA	4930593A02Rik	intron	ENSMUSG00000087019	ProperStrand	27	chr13	6581432	6581499	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	1	-9.5576
chr6	3201470	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	5038303	5038353	tRNA	tRNA711-SerGCT	.	675696	ProperStrand	3	1	-9.0398
chr6	100869497	100869597	SINE	B1_Mur2	Alu	chr6B1_Mur2100869476	NonProperStrand	1	chr6	100869308	100869398	SINE	B2_Mm1a	B2	chr6B2_Mm1a100869267	NonProperStrand	1	1	-inf
chr11	6419158	6419200	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	chr9	110281285	110281344	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-6.7355
chr17	39847228	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	94052342	94052400	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n94052354	NonProperStrand	1	1	-inf
chr3	41889958	41890058	LINE	L1Md_F	L1	chr3L1Md_F41889604	NonProperStrand	1	chr3	41890185	41890275	LINE	L1Md_F	L1	chr3L1Md_F41890086	NonProperStrand	1	1	-inf
chr2	125577704	125577794	protein_coding-noncoding	Secisbp2l	utr3	ENSMUSG00000035093	NonProperStrand	1	chr2	125578169	125578269	protein_coding	Secisbp2l	intron	ENSMUSG00000035093	NonProperStrand	2	1	-inf
chr8	120667652	120667752	SINE	B3A	B2	chr8B3A120667566	NonProperStrand	3	chr8	120667827	120667917	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n120667823	NonProperStrand	5	3	-inf
chr2	180699367	180699467	antisense	Gm14341	.	ENSMUSG00000087293	NonProperStrand	32	chr2	180439592	180439682	protein_coding	Dido1	intron	ENSMUSG00000038914	ProperStrand	2	1	-19.8025
chr10	58860030	58860124	LTR	RMER17A2	ERVK	chr10RMER17A258859929	NonProperStrand	1	chr10	58883840	58883887	protein_coding	Pla2g12b	intron	ENSMUSG00000009646	ProperStrand	3	1	-inf
chr1	82324219	82324317	protein_coding	Rhbdd1	intron	ENSMUSG00000026142	ProperStrand	165	chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	2	-12.6467
chr15	45323122	45323222	LINE	Lx7	L1	chr15Lx745323140	NonProperStrand	1	chr15	45323687	45323777	LINE	Lx8	L1	chr15Lx845323663	NonProperStrand	1	1	-inf
chr17	39846757	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	34870624	34870675	SINE	B1_Mm	Alu	chr4B1_Mm34870631	ProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr5	132369435	132369573	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-5.0405
chr17	39847202	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	152866267	152866332	LTR	LTR37B	ERV1	chr1LTR37B152866196	NonProperStrand	1	1	-inf
chr5	131444695	131444785	protein_coding	Wbscr17	intron	ENSMUSG00000034040	NonProperStrand	14	chr5	130751391	130751491	protein_coding	Tyw1	intron	ENSMUSG00000056310	ProperStrand	4	1	-inf
chr17	39847037	39847102	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	78262684	78262771	Simple_repeat	(TC)n	Simple_repeat	chr11(TC)n78262698	ProperStrand	2	1	-5.3533
mmu-miR-295-3p	0	23	miRNA	mmu-miR-295-3p	.	mmu-miR-295-3p	ProperStrand	4	chr15	75648552	75648653	protein_coding	Zc3h3	intron	ENSMUSG00000075600	ProperStrand	28	1	-20.3032
chr16	10324173	10324247	LTR	ORR1B1	MaLR	chr16ORR1B110324143	NonProperStrand	1	chr9	123462087	123462124	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847537	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	8724249	8724326	SINE	B1F	Alu	chr19B1F8724255	ProperStrand	9	3	-6.2462
chr12	82175117	82175140	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	chr15	30408708	30408815	protein_coding	Ctnnd2	intron	ENSMUSG00000022240	ProperStrand	32	1	-11.1326
chr18	20946541	20946631	LTR	MTE2a	MaLR	chr18MTE2a20946535	NonProperStrand	4	chr18	20946651	20946751	SINE	B2_Mm2	B2	chr18B2_Mm220946643	NonProperStrand	4	4	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr5	146261260	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-11.4733
chr8	111018755	111018834	SINE	B4A	B4	chr8B4A111018608	ProperStrand	1	chr7	121987654	121987711	protein_coding	Insc	intron	ENSMUSG00000048782	NonProperStrand	66	1	-inf
chr4	52451258	52451276	antisense	2700081L22Rik	.	ENSMUSG00000085763	NonProperStrand	4	chr18	12047647	12047757	protein_coding	Cables1	intron	ENSMUSG00000040957	NonProperStrand	2	1	-20.9262
chr9	56341654	56341689	protein_coding	Hmg20a	intron	ENSMUSG00000032329	NonProperStrand	29	chr11	4785272	4785294	protein_coding	Nipsnap1	intron	ENSMUSG00000034285	NonProperStrand	68	1	-13.2408
chrY	1173766	1173833	LINE	L1Md_F	L1	chrYL1Md_F1171936	NonProperStrand	2	chrY	1174250	1174307	LINE	L1Md_F2	L1	chrYL1Md_F21174042	ProperStrand	2	2	-inf
chr7	113294856	113294941	LINE	L1Md_F	L1	chr7L1Md_F113293686	ProperStrand	1	chr17	39847171	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr9	84107083	84107173	LINE	L1VL4	L1	chr9L1VL484107007	ProperStrand	1	chr9	84106857	84106957	LTR	MTB	MaLR	chr9MTB84106820	ProperStrand	1	1	-inf
chr4	133741497	133741533	protein_coding	Ccdc21	intron	ENSMUSG00000037443	ProperStrand	102	chr4	133751947	133751973	protein_coding	Gm7534	intron	ENSMUSG00000073747	ProperStrand	40	1	-11.7746
chr15	100528526	100528542	antisense	1810009N23Rik	.	ENSMUSG00000090062	ProperStrand	8	chr9	110281288	110281340	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-11.6905
chr12	58970838	58970928	LINE	Lx9	L1	chr12Lx958970838	NonProperStrand	1	chr12	58970697	58970797	SINE	B3	B2	chr12B358970610	ProperStrand	1	1	-inf
chr5	146261175	146261233	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	127234489	127234558	lincRNA	A630031M04Rik	intron	ENSMUSG00000087470	ProperStrand	45	1	-5.6243
chr17	39846409	39846654	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	117709713	117709730	LTR	ORR1E	MaLR	chr9ORR1E117709582	NonProperStrand	6	2	-5.1926
chr11	12398699	12398780	LINE	L1_Mur3	L1	chr11L1_Mur312398636	NonProperStrand	5	chr11	12397985	12398016	LTR	RLTR11A	ERVK	chr11RLTR11A12397915	ProperStrand	1	1	-inf
chrX	60109125	60109187	LINE	Lx9	L1	chrXLx960108603	NonProperStrand	1	chr9	123462036	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	6518284	6518374	LINE	L1_Mur2	L1	chr4L1_Mur26518250	NonProperStrand	1	chr4	6518046	6518146	LTR	BGLII_Mus	ERVK	chr4BGLII_Mus6517833	NonProperStrand	1	1	-inf
chr17	39847698	39847745	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	4426107	4426168	protein_coding-noncoding	Eps8l1	utr5	ENSMUSG00000006154	NonProperStrand	1	1	-inf
chr4	88174300	88174390	SINE	RSINE1	B4	chr4RSINE188174244	ProperStrand	2	chr4	88174409	88174509	Simple_repeat	(CATA)n	Simple_repeat	chr4(CATA)n88174408	ProperStrand	2	2	-inf
chr7	46850960	46851043	LINE	L1_Mus1	L1	chr7L1_Mus146850082	ProperStrand	37	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.8188
chr17	39847636	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	47610981	47611081	SINE	MIRb	MIR	chr17MIRb47610967	ProperStrand	2	2	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr14	31504309	31504368	protein_coding	Rft1	utr3	ENSMUSG00000052395	ProperStrand	7	1	-10.3618
chr14	75847321	75848128	SINE	B1F	Alu	chr14B1F75847231	ProperStrand	9	chr14	18684195	18684257	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	1	-13.8475
chr4	43492927	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	chr4	133965986	133966445	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	1	-13.8720
chr12	78350898	78351052	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr1	89545236	89545262	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	18	3	-18.6796
chr2	25925900	25925949	protein_coding	Nacc2	intron	ENSMUSG00000026932	ProperStrand	67	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-7.6283
chr8	48520012	48520112	lincRNA	4930448N21Rik	intron	ENSMUSG00000086634	ProperStrand	141	chr17	24720796	24720886	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-7.2978
chr11	120562487	120562537	antisense	Gm17178	.	ENSMUSG00000090758	ProperStrand	40	chr5	121208793	121208833	protein_coding	Oas3	exon	ENSMUSG00000032661	NonProperStrand	174	1	-10.7038
chr7	101169207	101169307	LINE	Lx2B	L1	chr7Lx2B101169132	ProperStrand	1	chr7	101653584	101653674	LINE	Lx6	L1	chr7Lx6101652999	NonProperStrand	1	1	-inf
chr3	138776181	138776203	LINE	Lx8	L1	chr3Lx8138775685	ProperStrand	1	chr7	126795486	126795712	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-inf
chr17	35838128	35838212	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.9470
chr7	122098303	122098351	DNA	URR1B	MER1_type	chr7URR1B122098276	ProperStrand	1	chr7	122098375	122098470	LTR	MTEa	MaLR	chr7MTEa122098393	ProperStrand	1	1	-inf
chr17	39847027	39847127	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	115656081	115656171	Simple_repeat	(GAAA)n	Simple_repeat	chr5(GAAA)n115656007	NonProperStrand	1	1	-inf
chr18	4444882	4444972	LTR	MuRRS4-int	ERV1	chr18MuRRS4-int4444729	NonProperStrand	1	chrX	160529987	160532987	protein_coding	Tmem27	intron	ENSMUSG00000015401	ProperStrand	3	1	-inf
chr11	116434309	116434380	protein_coding	Ube2o	intron	ENSMUSG00000020802	NonProperStrand	55	chr16	91743855	91743916	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	1	-10.3990
chr5	45434573	45434609	LTR	LTR50	ERVL	chr5LTR5045434219	ProperStrand	3	chr5	45443524	45443562	SINE	B1_Mur2	Alu	chr5B1_Mur245443477	ProperStrand	2	1	-20.2824
chr9	40804026	40804078	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr17	65847647	65847746	protein_coding	Tmem232	intron	ENSMUSG00000045036	NonProperStrand	58	1	-7.5071
chr17	39847673	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	155097166	155097265	protein_coding	Ssu72	intron	ENSMUSG00000029038	ProperStrand	5	1	-3.2379
chr7	6609930	6610030	LINE	Lx8	L1	chr7Lx86609926	NonProperStrand	1	chr7	6610031	6610121	LINE	Lx9	L1	chr7Lx96610052	NonProperStrand	1	1	-inf
chr11	83335557	83336478	LTR	MTE2b	MaLR	chr11MTE2b83336228	NonProperStrand	7	chr11	83335468	83336360	protein_coding	Gm11435	utr5	ENSMUSG00000018925	NonProperStrand	7	7	-inf
chr17	39845770	39845791	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	29778446	29778477	protein_coding	Map4k1	intron	ENSMUSG00000037337	ProperStrand	9	1	-5.8320
chr6	72362229	72362299	LINE	L1Md_F2	L1	chr6L1Md_F272361747	NonProperStrand	1	chr11	96076837	96076901	SINE	B1_Mur4	Alu	chr11B1_Mur496076792	NonProperStrand	1	1	-inf
chr10	76438823	76438947	LTR	ORR1B1	MaLR	chr10ORR1B176438666	NonProperStrand	1	chr1	110132697	110132715	LTR	MurERV4_19-int	ERVK	chr1MurERV4_19-int110131558	NonProperStrand	5	1	-inf
chr4	41306503	41306555	protein_coding	Ubap1	intron	ENSMUSG00000028437	NonProperStrand	9	chr13	44869942	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.2984
chr5	130187699	130187799	LTR	MYSERV6-int	ERVK	chr5MYSERV6-int130187532	NonProperStrand	1	chr5	130187914	130188004	SINE	PB1D7	Alu	chr5PB1D7130187930	NonProperStrand	1	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr7	116448696	116448713	protein_coding	Stk33	intron	ENSMUSG00000031027	NonProperStrand	13	1	-13.3991
chr11	91980819	91980909	LINE	L1_Mus3	L1	chr11L1_Mus391980703	NonProperStrand	1	chr11	91981131	91981231	LINE	L1_Mus3	L1	chr11L1_Mus391980941	ProperStrand	1	1	-inf
chr16	23111681	23111713	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	123	chr8	91558959	91558981	protein_coding	Sall1	intron	ENSMUSG00000031665	NonProperStrand	129	1	-9.0463
chr1	119577793	119577824	LINE	L1Md_F2	L1	chr1L1Md_F2119576850	ProperStrand	1	chr17	39847160	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39847779	39847904	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	49653338	49662351	protein_coding	Aspn	utr3	ENSMUSG00000021388	ProperStrand	7	3	-7.4178
chr9	110281300	110281332	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr11	11100267	11100289	protein_coding	Vwc2	intron	ENSMUSG00000050830	NonProperStrand	1	1	-inf
chr17	39846948	39847000	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	119472515	119472595	protein_coding	Atmin	intron	ENSMUSG00000047388	ProperStrand	1	1	-inf
chr17	39847366	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	101678229	101678270	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int101677355	NonProperStrand	1	1	-inf
chr13	112578208	112578297	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr18	35734466	35734566	protein_coding	Matr3	intron	ENSMUSG00000037236	NonProperStrand	1	1	-inf
chr11	88584873	88588578	lincRNA	C030037D09Rik	intron	ENSMUSG00000087574	NonProperStrand	108	chr11	88504735	88577196	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	5	-20.1268
chr2	5641453	5641553	SINE	B4A	B4	chr2B4A5641420	NonProperStrand	5	chr2	5641340	5641460	SINE	PB1D10	Alu	chr2PB1D105641354	ProperStrand	3	3	-inf
chr2	90517224	90517324	LINE	Lx8	L1	chr2Lx890517106	ProperStrand	2	chr2	90517377	90517468	protein_coding	Nup160	utr5	ENSMUSG00000051329	NonProperStrand	92	2	-inf
chr17	39847230	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	22129924	22130026	SINE	B2_Mm2	B2	chr9B2_Mm222129911	NonProperStrand	6	1	-3.9545
chr8	84439695	84439754	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr11	74878122	74878150	protein_coding	Smg6	intron	ENSMUSG00000038290	NonProperStrand	52	1	-6.8003
chr1	39548783	39548852	LINE	Lx5	L1	chr1Lx539548764	NonProperStrand	5	chr7	24423517	24423576	LTR	MT2_Mm	ERVL	chr7MT2_Mm24423257	NonProperStrand	1	1	-inf
chr6	57508104	57508124	LINE	L1_Mur3	L1	chr6L1_Mur357507948	ProperStrand	3	chr14	75900407	75900437	protein_coding	Siah3	intron	ENSMUSG00000091722	NonProperStrand	15	1	-21.4444
chr5	76107441	76107480	LTR	RLTR15	ERVK	chr5RLTR1576107186	ProperStrand	1	chr11	104401716	104401834	protein_coding	Cdc27	intron	ENSMUSG00000020687	ProperStrand	27	1	-inf
chr13	82147198	82147288	LINE	Lx8	L1	chr13Lx882147109	ProperStrand	1	chr13	82147539	82147639	LINE	Lx8	L1	chr13Lx882147550	ProperStrand	1	1	-inf
chr9	21351270	21351289	Low_complexity	GC_rich	Low_complexity	chr9GC_rich21351263	ProperStrand	1	chr9	21351431	21351460	protein_coding	Carm1	utr5	ENSMUSG00000032185	ProperStrand	86	1	-inf
chr4	72157790	72157807	LTR	IAP-d-int	ERVK	chr4IAP-d-int72152399	ProperStrand	2	chr7	57654175	57654293	protein_coding	Nell1	intron	ENSMUSG00000055409	ProperStrand	40	1	-20.0320
chr4	146172244	146172344	antisense	Gm13165	.	ENSMUSG00000086654	ProperStrand	1	chr4	145685267	145685357	protein_coding	Gm13247	intron	ENSMUSG00000056300	ProperStrand	2	1	-inf
chr9	66480911	66481012	LINE	L1Md_A	L1	chr9L1Md_A66480764	NonProperStrand	2	chr9	66479474	66480893	Low_complexity	CT-rich	Low_complexity	chr9CT-rich66479357	ProperStrand	2	2	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr14	79010568	79010594	protein_coding	Dgkh	intron	ENSMUSG00000034731	NonProperStrand	61	1	-6.5382
chr11	120616129	120616162	LTR	MuRRS-int	ERV1	chr11MuRRS-int120613825	ProperStrand	17	chr3	104824959	104825023	protein_coding	Cttnbp2nl	intron	ENSMUSG00000062127	ProperStrand	31	1	-15.9338
chr13	94066790	94066880	LINE	L1M2	L1	chr13L1M294066251	NonProperStrand	1	chr13	94067179	94067279	SINE	B4A	B4	chr13B4A94067127	ProperStrand	1	1	-inf
chr17	39847185	39847219	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	140532410	140532492	protein_coding-noncoding	Sdhb	utr5	ENSMUSG00000009863	ProperStrand	2	2	-inf
chr11	109011656	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	115248594	115248698	protein_coding	Ankrd13a	intron	ENSMUSG00000041870	NonProperStrand	64	1	-5.9725
chr17	39847129	39847154	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	167347164	167347207	LTR	MERVL-int	ERVL	chr2MERVL-int167346515	NonProperStrand	3	1	-5.4882
chr10	79950866	79950956	Low_complexity	C-rich	Low_complexity	chr10C-rich79950799	NonProperStrand	1	chr10	79950755	79950855	Simple_repeat	(CCTG)n	Simple_repeat	chr10(CCTG)n79950641	NonProperStrand	1	1	-inf
chr17	39846932	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	185418235	185418314	LTR	ORR1A2	MaLR	chr1ORR1A2185418112	NonProperStrand	2	1	-5.3533
chr9	68868155	68868219	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	chr18	75375067	75375141	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-5.4776
chr3	102174054	102174112	SINE	B3A	B2	chr3B3A102174008	ProperStrand	1	chr4	116610461	116610535	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-inf
chr6	124752067	124752139	LTR	MMETn-int	ERVK	chr6MMETn-int124747368	ProperStrand	10	chr17	35146757	35146839	protein_coding	Vars	intron	ENSMUSG00000007029	ProperStrand	65	1	-15.5427
chr13	114026476	114026576	Low_complexity	CT-rich	Low_complexity	chr13CT-rich114026458	ProperStrand	3	chr13	114026360	114026450	SINE	ID4_	ID	chr13ID4_114026350	NonProperStrand	2	2	-inf
chr17	13812695	13812785	lincRNA	Gm16046	exon	ENSMUSG00000085705	NonProperStrand	2	chr17	11468424	11468524	protein_coding	Park2	intron	ENSMUSG00000023826	NonProperStrand	48	1	-19.2501
chr14	67860383	67860432	protein_coding	Ebf2	intron	ENSMUSG00000022053	NonProperStrand	40	chr13	94504303	94504362	protein_coding	Dmgdh	intron	ENSMUSG00000042102	ProperStrand	69	1	-12.5601
chr13	30913037	30913096	protein_coding	Exoc2	intron	ENSMUSG00000021357	ProperStrand	15	chr2	33091398	33091437	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-11.0303
chr14	58392721	58392811	LINE	L1M3	L1	chr14L1M358392641	NonProperStrand	1	chr14	58392544	58392644	SINE	B3	B2	chr14B358392438	ProperStrand	1	1	-inf
chr9	110945235	110946105	LINE	Lx3C	L1	chr9Lx3C110945252	ProperStrand	16	chr17	39847607	39847991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	4	-5.7550
chr4	104557416	104557469	SINE	B3	B2	chr4B3104557335	ProperStrand	1	chr2	120533149	120533184	protein_coding	Stard9	intron	ENSMUSG00000033705	NonProperStrand	75	1	-inf
chr15	10462318	10463939	protein_coding	Ttc23l	intron	ENSMUSG00000022249	ProperStrand	53	chr8	18933111	18933128	protein_coding	Xkr5	utr3	ENSMUSG00000039814	NonProperStrand	7	1	-16.6655
chr15	12928942	12929667	LINE	Lx7	L1	chr15Lx712927830	NonProperStrand	2	chr6	4754673	4754803	LINE	Lx2	L1	chr6Lx24754613	ProperStrand	26	1	-20.6107
chr14	63621177	63621226	LTR	MTD	MaLR	chr14MTD63621150	ProperStrand	1	chr14	63621017	63621076	SINE	B2_Mm2	B2	chr14B2_Mm263620966	NonProperStrand	1	1	-inf
chr10	78157875	78157914	LINE	L1Md_F2	L1	chr10L1Md_F278157046	ProperStrand	2	chr17	43324108	43324136	LINE	L1Md_A	L1	chr17L1Md_A43318260	ProperStrand	1	1	-inf
chr9	33851778	33851868	LINE	HAL1-3A_ME	L1	chr9HAL1-3A_ME33851738	NonProperStrand	1	chr9	33851609	33851708	Low_complexity	GA-rich	Low_complexity	chr9GA-rich33851615	NonProperStrand	1	1	-inf
chr19	15961695	15961770	LTR	ORR1A2	MaLR	chr19ORR1A215961697	ProperStrand	2	chr15	99167548	99167612	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	1	-18.5502
chr8	91624488	91624545	LINE	L1_Mus1	L1	chr8L1_Mus191623255	NonProperStrand	22	chr5	148328913	148328959	protein_coding	Pan3	intron	ENSMUSG00000029647	NonProperStrand	50	1	-14.4308
chr17	32003235	32003335	LINE	L1MB2	L1	chr17L1MB232003011	NonProperStrand	4	chr17	32003370	32003460	SINE	PB1D10	Alu	chr17PB1D1032003363	NonProperStrand	4	4	-inf
chr14	21092422	21169816	LTR	IAPEz-int	ERVK	chr14IAPEz-int21099485	ProperStrand	4	chr14	21234902	21235002	protein_coding	Ttc18	intron	ENSMUSG00000039543	NonProperStrand	24	1	-19.7369
chr17	39843787	39843814	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	144373693	144373710	protein_coding	Rbbp9	intron	ENSMUSG00000027428	ProperStrand	2	2	-inf
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr4	122845984	122848445	SINE	B2_Mm2	B2	chr4B2_Mm2122845979	ProperStrand	1	1	-inf
chr11	109011785	109011875	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	13390411	13390511	protein_coding	Aig1	intron	ENSMUSG00000019806	ProperStrand	18	1	-8.5158
chr11	101254461	101254551	LTR	MT2B	ERVL	chr11MT2B101254455	NonProperStrand	1	chr11	101254204	101254304	SINE	RSINE1	B4	chr11RSINE1101254124	ProperStrand	1	1	-inf
chr17	38019108	38019252	LTR	MERVL-int	ERVL	chr17MERVL-int38014162	NonProperStrand	9	chr11	109664809	109665870	protein_coding	1700012B07Rik	intron	ENSMUSG00000020617	NonProperStrand	12	1	-19.4408
chr15	62084890	62084975	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr8	112807167	112807184	protein_coding	Hydin	intron	ENSMUSG00000059854	ProperStrand	5	1	-11.3564
chr17	39846452	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	4684130	4705453	protein_coding	Dnaja3	utr5	ENSMUSG00000004069	ProperStrand	10	2	-3.6091
chr8	77846697	77846797	LINE	L1_Mur2	L1	chr8L1_Mur277845120	NonProperStrand	1	chr8	77847102	77847192	LINE	L1_Mur2	L1	chr8L1_Mur277846986	NonProperStrand	1	1	-inf
chr17	39846954	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	51470327	51470373	LTR	LTR37B	ERV1	chr1LTR37B51470197	ProperStrand	1	1	-inf
chrX	79359987	79360066	LINE	L1VL4	L1	chrXL1VL479359557	NonProperStrand	1	chr17	39846660	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847759	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	140039473	140039492	LTR	ORR1D2	MaLR	chr6ORR1D2140039330	ProperStrand	2	1	-5.4040
chr16	51170820	51170890	SINE	B4A	B4	chr16B4A51170657	NonProperStrand	1	chr2	20547293	20547353	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-inf
chr1	156054248	156054325	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n156054224	ProperStrand	1	chr1	156054721	156054787	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n156054677	ProperStrand	1	1	-inf
chr2	5165822	5165858	LTR	ORR1D1	MaLR	chr2ORR1D15165750	ProperStrand	1	chr2	5166318	5166364	SINE	MIRb	MIR	chr2MIRb5166271	ProperStrand	1	1	-inf
chr6	38509477	38509552	protein_coding	Luc7l2	intron	ENSMUSG00000029823	ProperStrand	46	chr5	142669517	142669562	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-9.2939
chr17	39847705	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	90005446	90005466	protein_coding	1700010L04Rik	intron	ENSMUSG00000030636	ProperStrand	1	1	-inf
chr7	118152304	118152356	LTR	IAPEz-int	ERVK	chr7IAPEz-int118152132	ProperStrand	2	chr7	118156575	118156678	SINE	B4	B4	chr7B4118156541	ProperStrand	5	1	-inf
chr12	108925872	108925962	LINE	L1M5	L1	chr12L1M5108925681	NonProperStrand	2	chr12	108925975	108926075	LINE	L1M5	L1	chr12L1M5108925987	NonProperStrand	2	2	-inf
chr1	131928193	131929618	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	chr12	79379280	79379409	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-3.9576
chr7	19391026	19391127	LINE	Lx3_Mus	L1	chr7Lx3_Mus19391048	NonProperStrand	4	chr7	19390912	19391003	LINE	MusHAL1	L1	chr7MusHAL119390603	ProperStrand	1	1	-inf
chr17	39843987	39844025	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr17	23610241	23610284	protein_coding	Vmn2r117	intron	ENSMUSG00000091407	NonProperStrand	24	1	-5.7636
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr5	65262126	65262254	LTR	RLTR31_Mm	ERVK	chr5RLTR31_Mm65262116	ProperStrand	4	1	-15.4946
chr17	39847989	39848055	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	120773466	120773522	LTR	RLTR13B1	ERVK	chr4RLTR13B1120772843	NonProperStrand	1	1	-inf
chr4	11333202	11333236	SINE	B3A	B2	chr4B3A11333181	NonProperStrand	1	chr17	70963685	70963782	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr17	39848513	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr16	22823104	22823180	protein_coding	Tbccd1	intron	ENSMUSG00000004462	ProperStrand	21	1	-3.5346
chr17	39846649	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	58228124	58228191	SINE	B1_Mur1	Alu	chr9B1_Mur158228055	ProperStrand	1	1	-inf
chrX	111768695	111768715	LTR	MTB	MaLR	chrXMTB111768624	NonProperStrand	1	chr19	8968086	8968181	protein_coding	Ints5	intron	ENSMUSG00000071652	ProperStrand	72	1	-inf
chr17	29481769	29481822	protein_coding	Mtch1	intron	ENSMUSG00000024012	NonProperStrand	5	chr1	151689596	151695752	protein_coding	Pla2g4a	intron	ENSMUSG00000056220	NonProperStrand	25	1	-19.3499
chr6	125339220	125342615	LTR	MTB	MaLR	chr6MTB125342223	NonProperStrand	1	chr2	104028595	104028699	protein_coding	D430041D05Rik	intron	ENSMUSG00000068373	NonProperStrand	21	1	-inf
chr4	130772737	130774488	DNA	URR1B	MER1_type	chr4URR1B130773021	NonProperStrand	1	chr4	130774496	130774598	DNA	URR1B	MER1_type	chr4URR1B130774376	NonProperStrand	2	1	-inf
chr13	51778936	51779010	protein_coding	Secisbp2	utr3	ENSMUSG00000035139	NonProperStrand	64	chr13	51782122	51782208	protein_coding	Gm15440	intron	ENSMUSG00000051107	ProperStrand	23	1	-13.8381
chr14	33967588	33967631	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	chr1	71086500	71086596	pseudogene	Gm16236	.	ENSMUSG00000089965	ProperStrand	2	1	-18.0925
chr7	89243933	89243972	LTR	MLT1B	MaLR	chr7MLT1B89243777	ProperStrand	1	chr9	118630041	118630096	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-inf
chr15	100246801	100246878	protein_coding	Slc11a2	intron	ENSMUSG00000023030	NonProperStrand	35	chr3	122450572	122450630	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-10.5046
chr7	49323236	49323273	LINE	L1_Mus3	L1	chr7L1_Mus349321114	ProperStrand	1	chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr18	75916325	75916415	Low_complexity	GA-rich	Low_complexity	chr18GA-rich75916308	ProperStrand	5	chr18	75916459	75916559	Simple_repeat	(GGA)n	Simple_repeat	chr18(GGA)n75916450	ProperStrand	5	5	-inf
chr15	65143682	65143782	LINE	Lx8	L1	chr15Lx865143622	ProperStrand	1	chr15	65143955	65144045	LINE	Lx8	L1	chr15Lx865143980	ProperStrand	1	1	-inf
chr12	18039731	18039790	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n18039666	ProperStrand	1	chr12	78350926	78350996	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr18	75008678	75008696	LINE	Lx8	L1	chr18Lx875008384	ProperStrand	1	chr16	89829814	89829935	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	1	-inf
chr17	39847471	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	116657987	116658077	protein_coding	Tmem72	intron	ENSMUSG00000048108	ProperStrand	5	1	-3.2379
chr11	20215647	20215699	protein_coding	Slc1a4	intron	ENSMUSG00000020142	NonProperStrand	34	chr2	163080732	163080802	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-9.5302
chr9	123462082	123462128	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	48097044	48097142	protein_coding	Fbxo34	intron	ENSMUSG00000037536	NonProperStrand	2	2	-inf
chr7	25236468	25236568	SINE	ID_B1	B4	chr7ID_B125236462	ProperStrand	1	chr7	25236663	25236753	SINE	MIRc	MIR	chr7MIRc25236675	ProperStrand	1	1	-inf
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	102829379	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-5.7611
chr19	44305987	44306071	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	chr12	100434954	100435014	protein_coding	Foxn3	exon	ENSMUSG00000033713	ProperStrand	136	1	-8.1927
chr17	39847611	39847637	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	85462112	85464820	protein_coding	Egr4	exon	ENSMUSG00000071341	NonProperStrand	4	1	-3.7035
chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	10	chr2	154457056	154457188	protein_coding	Zfp341	intron	ENSMUSG00000059842	ProperStrand	110	1	-14.4676
chr2	165280799	165280889	protein_coding	Slc13a3	intron	ENSMUSG00000018459	ProperStrand	44	chr4	84656416	84656516	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	1	-12.1726
chr3	148310101	148310201	SINE	B3A	B2	chr3B3A148310127	ProperStrand	1	chr3	156481281	156481371	protein_coding	Negr1	intron	ENSMUSG00000040037	NonProperStrand	17	1	-inf
chr1	179030973	179031063	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr9	64175422	64175522	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-5.7681
chr1	171503077	171503107	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr3	108427191	108427257	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	57	1	-13.2166
chr18	25291990	25292045	protein_coding	5730494M16Rik	intron	ENSMUSG00000024269	NonProperStrand	28	chr18	25344619	25344675	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	1	-14.0160
chr5	125406042	125406090	SINE	B4	B4	chr5B4125405830	ProperStrand	4	chr19	46982214	46982290	protein_coding	Nt5c2	intron	ENSMUSG00000025041	ProperStrand	39	1	-18.7700
chr17	39847871	39847923	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	58673458	58673528	protein_coding	Hcn4	intron	ENSMUSG00000032338	NonProperStrand	4	1	-3.7035
chr4	43492828	43492923	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr4	43492922	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	1	-8.0598
chr4	117568007	117568026	protein_coding-noncoding	Ipo13	utr3	ENSMUSG00000033365	NonProperStrand	1	chr13	96584707	96584835	protein_coding	Iqgap2	intron	ENSMUSG00000021676	NonProperStrand	66	1	-inf
chr17	39847822	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	47877827	47877911	LTR	RLTR9A	ERVK	chr1RLTR9A47877823	ProperStrand	1	1	-inf
chr17	39848512	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	34124441	34124517	LINE	L1Md_F3	L1	chr7L1Md_F334122851	ProperStrand	2	1	-8.7208
chr17	39847659	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	32712241	32714555	SINE	PB1D10	Alu	chr3PB1D1032714486	ProperStrand	1	1	-inf
chr5	74553511	74553611	DNA	MER2	MER2_type	chr5MER274553409	ProperStrand	1	chr5	74553695	74553785	SINE	B2_Mm2	B2	chr5B2_Mm274553712	ProperStrand	1	1	-inf
chr17	39846452	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	4798704	4798742	protein_coding	Isoc2b	intron	ENSMUSG00000052605	NonProperStrand	3	1	-4.3017
chr16	90090157	90090257	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr17	70974447	70975499	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	3	-3.5319
chr11	120353063	120353153	antisense	Gm11788	.	ENSMUSG00000086929	NonProperStrand	10	chr11	120353151	120353251	protein_coding	Slc25a10	utr5	ENSMUSG00000025792	ProperStrand	2	2	-inf
chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	25561030	25561898	antisense	A230005M16Rik	.	ENSMUSG00000087612	NonProperStrand	3	1	-4.3512
chr8	3803245	3803330	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	156	chr7	49759746	49759766	protein_coding	Zfp141	intron	ENSMUSG00000092416	NonProperStrand	1	1	-inf
chr9	52651066	52651156	LINE	L1_Rod	L1	chr9L1_Rod52650899	ProperStrand	1	chr9	52650712	52650812	LINE	MusHAL1	L1	chr9MusHAL152650595	NonProperStrand	1	1	-inf
chr14	116275361	116275451	protein_coding	Gpc5	intron	ENSMUSG00000022112	NonProperStrand	33	chr14	116059294	116059394	protein_coding	Gpc5	intron	ENSMUSG00000022112	ProperStrand	42	1	-13.9543
chr8	71315194	71322938	protein_coding-noncoding	Ints10	utr5	ENSMUSG00000031864	ProperStrand	1	chr8	71328662	71330744	protein_coding	Ints10	intron	ENSMUSG00000031864	ProperStrand	49	1	-inf
chr19	4001670	4001841	protein_coding	Nudt8	exon	ENSMUSG00000024869	ProperStrand	1	chr4	146535432	146535487	protein_coding	Gm13139	intron	ENSMUSG00000067916	ProperStrand	23	1	-inf
chr1	85287276	85287366	LTR	MTEa-int	MaLR	chr1MTEa-int85286459	NonProperStrand	1	chr1	85243163	85243263	protein_coding	C130026I21Rik	utr3	ENSMUSG00000052477	ProperStrand	6	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr5	92901727	92901859	protein_coding	Scarb2	intron	ENSMUSG00000029426	NonProperStrand	20	1	-12.8265
chr8	41131608	41131708	LINE	Lx6	L1	chr8Lx641131468	ProperStrand	1	chr8	41131739	41131829	LINE	Lx6	L1	chr8Lx641131633	ProperStrand	3	1	-inf
chr17	39847276	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	128432592	128433119	LTR	ORR1A2	MaLR	chr6ORR1A2128432548	ProperStrand	7	1	-3.6430
chr17	39846882	39846932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	109947742	109947782	protein_coding	Nob1	intron	ENSMUSG00000003848	ProperStrand	1	1	-inf
chr16	36793066	36793166	protein_coding	Eaf2	utr3	ENSMUSG00000022838	NonProperStrand	5	chr8	121959955	121960045	protein_coding	Osgin1	intron	ENSMUSG00000074063	ProperStrand	36	3	-inf
chr2	27734833	27734858	LTR	ORR1B1	MaLR	chr2ORR1B127734501	NonProperStrand	1	chr5	139279039	139279136	protein_coding	Fam20c	intron	ENSMUSG00000025854	NonProperStrand	41	1	-inf
chr4	120866938	120867002	protein_coding	Rlf	intron	ENSMUSG00000049878	ProperStrand	13	chr18	71462757	71462776	protein_coding	Dcc	intron	ENSMUSG00000060534	NonProperStrand	18	1	-17.6336
chr11	68831233	68831292	protein_coding	1500010J02Rik	intron	ENSMUSG00000020898	NonProperStrand	6	chr2	5379271	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr19	24172398	24172498	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	127	chr7	141890739	141890784	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	3	-19.5237
chr17	39846415	39846653	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	22035124	22035219	antisense	Gm11280	.	ENSMUSG00000085393	ProperStrand	5	2	-5.8332
chr3	22171026	22171087	LINE	L1Md_F2	L1	chr3L1Md_F222169604	NonProperStrand	8	chrX	152131359	152131378	protein_coding	Gm15155	intron	ENSMUSG00000055109	ProperStrand	121	1	-14.7635
chr17	39847810	39847865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	101089755	101089815	SINE	RSINE1	B4	chr11RSINE1101089639	ProperStrand	1	1	-inf
chr11	96938814	96938916	LTR	RMER19B	ERVK	chr11RMER19B96938551	NonProperStrand	1	chr11	96937984	96938016	SINE	B2_Mm1t	B2	chr11B2_Mm1t96937955	ProperStrand	1	1	-inf
chr11	109011792	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	33038912	33040403	LINE	L1_Mus1	L1	chr12L1_Mus133040063	ProperStrand	2	1	-13.5345
chr10	40258615	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr13	17772440	17772494	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	1	-5.4568
chr17	39846303	39846398	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	122932113	122932170	protein_coding	Tmem42	utr3	ENSMUSG00000066233	ProperStrand	1	1	-inf
chr7	90658088	90658178	LINE	L1VL4	L1	chr7L1VL490657860	ProperStrand	1	chr7	90657758	90657858	LINE	L1_Mus3	L1	chr7L1_Mus390655710	ProperStrand	1	1	-inf
chr14	63142337	63142371	LINE	Lx7	L1	chr14Lx763140093	ProperStrand	11	chr9	123461891	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr11	88641231	88641321	Simple_repeat	(GAAA)n	Simple_repeat	chr11(GAAA)n88641223	NonProperStrand	3	chr11	88641089	88641189	Simple_repeat	(GGAA)n	Simple_repeat	chr11(GGAA)n88641010	NonProperStrand	4	3	-inf
chr7	141440065	141440137	LINE	Lx6	L1	chr7Lx6141439881	ProperStrand	4	chr9	14507858	14507896	protein_coding	Piwil4	intron	ENSMUSG00000036912	NonProperStrand	3	1	-inf
chrX	12594882	12596286	DNA	Charlie1a	MER1_type	chrXCharlie1a12595273	ProperStrand	1	chr6	122934216	122934233	LINE	L1Md_F3	L1	chr6L1Md_F3122932790	NonProperStrand	1	1	-inf
chr18	14627294	14633556	LINE	L1_Mus4	L1	chr18L1_Mus414626687	NonProperStrand	6	chr15	100210320	100210397	protein_coding	RP24-73K9.3	intron	ENSMUSG00000093789	ProperStrand	22	1	-19.1831
chr11	97534814	97534929	protein_coding	Mllt6	exon	ENSMUSG00000038437	NonProperStrand	19	chr13	97190584	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-11.9389
chr14	100053543	100053572	LINE	L1Md_T	L1	chr14L1Md_T100048550	NonProperStrand	8	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-17.9695
chr5	103774327	103774410	LTR	MTB_Mm	MaLR	chr5MTB_Mm103774066	ProperStrand	1	chr17	39843415	39843482	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr7	3218637	3218662	miRNA	Mir290	.	ENSMUSG00000077815	ProperStrand	2	chr4	118148719	118148828	protein_coding	Tie1	exon	ENSMUSG00000033191	ProperStrand	26	1	-20.6107
chr12	17548427	17548788	SINE	B1_Mur1	Alu	chr12B1_Mur117548513	ProperStrand	7	chr12	17548375	17548566	SINE	B1_Mus2	Alu	chr12B1_Mus217548302	NonProperStrand	5	1	-22.8469
chr12	99279627	99279652	LINE	Lx7	L1	chr12Lx799279318	NonProperStrand	1	chr9	123461930	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847668	39847758	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	8893433	8893533	SINE	B4A	B4	chr13B4A8893452	ProperStrand	1	1	-inf
chr11	100911783	100911858	protein_coding	Atp6v0a1	intron	ENSMUSG00000019302	NonProperStrand	73	chr4	40722511	40722528	pseudogene	Gm12396	.	ENSMUSG00000056412	NonProperStrand	1	1	-inf
chr16	7515555	7515645	LINE	L1MA4	L1	chr16L1MA47515534	ProperStrand	1	chr16	7515409	7515508	SINE	B1_Mur4	Alu	chr16B1_Mur47515356	ProperStrand	1	1	-inf
chr2	34407409	34407509	protein_coding	Mapkap1	intron	ENSMUSG00000038696	ProperStrand	60	chr7	30043442	30043532	protein_coding	Spint2	exon	ENSMUSG00000074227	NonProperStrand	2	1	-19.2869
chr19	10607891	10608295	protein_coding	Cpsf7	intron	ENSMUSG00000034820	ProperStrand	82	chr8	13759603	13759672	protein_coding	Cdc16	intron	ENSMUSG00000038416	NonProperStrand	6	1	-16.1956
chr6	128487550	128487600	LINE	L2a	L2	chr6L2a128487044	NonProperStrand	1	chr3	138882756	138882854	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	61	1	-inf
chr16	30973532	30973632	protein_coding	AI480653	intron	ENSMUSG00000047434	NonProperStrand	5	chr16	30973446	30973536	sense_intronic	Gm15742	.	ENSMUSG00000087605	NonProperStrand	1	1	-inf
chr8	114987393	114987493	SINE	B3	B2	chr8B3114987417	ProperStrand	4	chr8	114987298	114987388	SINE	ID_B1	B4	chr8ID_B1114987199	ProperStrand	4	4	-inf
chr5	146261265	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	26387083	26387160	SINE	B3	B2	chr2B326386998	NonProperStrand	2	1	-15.3301
chr10	40258562	40258636	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr10	40389245	40389330	protein_coding	Ddo	intron	ENSMUSG00000063428	ProperStrand	39	1	-6.2039
chr5	122831323	122831423	protein_coding-noncoding	Gpn3	utr5	ENSMUSG00000029464	NonProperStrand	1	chr5	122831890	122831980	protein_coding	Gpn3	intron	ENSMUSG00000029464	NonProperStrand	1	1	-inf
chr6	90468562	90468666	protein_coding	Aldh1l1	intron	ENSMUSG00000030088	ProperStrand	124	chr2	139849844	139849905	protein_coding	Tasp1	intron	ENSMUSG00000039033	ProperStrand	40	1	-11.3827
chr6	138946064	138946154	LINE	Lx5	L1	chr6Lx5138945979	NonProperStrand	1	chr6	138946401	138946501	LINE	Lx5	L1	chr6Lx5138946375	NonProperStrand	1	1	-inf
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	87618751	87683575	protein_coding	Prcc	intron	ENSMUSG00000004895	NonProperStrand	4	1	-3.7035
chr7	96680347	96680447	LTR	ORR1E	MaLR	chr7ORR1E96680359	ProperStrand	1	chr7	96680171	96680261	SINE	B4	B4	chr7B496680065	ProperStrand	1	1	-inf
chrX	93373102	93373136	LINE	Lx9	L1	chrXLx993373077	NonProperStrand	1	chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	106424082	106424172	SINE	MIR3	MIR	chr8MIR3106424063	NonProperStrand	1	chr11	62716646	62716746	protein_coding	Fam18b	intron	ENSMUSG00000014177	NonProperStrand	2	1	-inf
chr6	3201481	3201556	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	128075342	128076125	protein_coding	Ikzf4	intron	ENSMUSG00000002578	NonProperStrand	38	1	-3.7289
chr10	83412532	83412591	SINE	B4	B4	chr10B483412549	NonProperStrand	3	chr10	83412391	83412440	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n83412404	ProperStrand	3	2	-20.2273
chr5	137528541	137528692	SINE	RSINE1	B4	chr5RSINE1137528560	ProperStrand	2	chr5	137528504	137528542	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n137528506	NonProperStrand	2	2	-inf
chr15	12928942	12929667	LINE	Lx7	L1	chr15Lx712927830	NonProperStrand	2	chr6	4759178	4759294	lincRNA	RP23-353M17.3	exon	ENSMUSG00000093570	NonProperStrand	55	1	-19.1124
chr4	3835238	3835507	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr16	90498916	90498960	protein_coding	Hunk	utr3	ENSMUSG00000053414	ProperStrand	63	1	-11.9246
chr11	16972198	16972215	protein_coding	Cnrip1	intron	ENSMUSG00000044629	ProperStrand	2	chr3	36092587	36092614	protein_coding	Qrfpr	intron	ENSMUSG00000058400	ProperStrand	6	1	-inf
chr9	47818179	47818279	LINE	L1_Mur3	L1	chr9L1_Mur347817923	NonProperStrand	1	chr9	63332740	63332830	protein_coding	Iqch	intron	ENSMUSG00000037801	ProperStrand	108	1	-inf
chr5	144213981	144213998	LINE	L1_Mur1	L1	chr5L1_Mur1144213779	ProperStrand	1	chr17	39847132	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	107070492	107070516	protein_coding	Car7	intron	ENSMUSG00000031883	NonProperStrand	3	chr11	87085912	87086030	protein_coding	Ppm1e	intron	ENSMUSG00000046442	ProperStrand	15	1	-21.4444
chr7	90500292	90500382	DNA	Arthur1	Tip100	chr7Arthur190500005	ProperStrand	1	chr7	91252402	91252502	LTR	MTEb	MaLR	chr7MTEb91252267	NonProperStrand	1	1	-inf
chrX	116287296	116287322	LTR	IAPLTR2_Mm	ERVK	chrXIAPLTR2_Mm116286882	ProperStrand	3	chr2	5379270	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr1	132155649	132155667	LINE	L1Md_F2	L1	chr1L1Md_F2132155268	ProperStrand	1	chr17	39846622	39846705	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	78350926	78351002	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr7	16915509	16915566	protein_coding	Sae1	intron	ENSMUSG00000052833	ProperStrand	49	1	-6.2956
chr11	5978692	5978792	LINE	L1MEg	L1	chr11L1MEg5978702	ProperStrand	3	chr11	5978833	5978923	LINE	L1MEg	L1	chr11L1MEg5978811	ProperStrand	3	3	-inf
chr5	149697753	149697844	protein_coding-noncoding	Katnal1	utr3	ENSMUSG00000041298	NonProperStrand	6	chr5	149697865	149697965	protein_coding	Katnal1	intron	ENSMUSG00000041298	NonProperStrand	29	6	-inf
chr17	39847737	39847779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	105568309	105568388	LTR	MTD	MaLR	chr1MTD105568177	NonProperStrand	1	1	-inf
chrX	155334175	155334286	LINE	L1Md_F2	L1	chrXL1Md_F2155332049	ProperStrand	2	chr11	84830614	84830633	protein_coding	Usp32	intron	ENSMUSG00000000804	ProperStrand	59	1	-20.1703
chr1	109696960	109697060	LINE	Lx7	L1	chr1Lx7109696917	ProperStrand	1	chr1	109696843	109696932	LTR	MT2_Mm	ERVL	chr1MT2_Mm109696418	ProperStrand	1	1	-inf
chr17	70963685	70963777	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	70572835	70572897	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-5.4343
chr13	86667795	86667885	LINE	L1_Mur3	L1	chr13L1_Mur386666911	ProperStrand	1	chr9	107165211	107165311	protein_coding-noncoding	Mapkapk3	utr3	ENSMUSG00000032577	NonProperStrand	1	1	-inf
chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	43359936	43359991	Low_complexity	GA-rich	Low_complexity	chr10GA-rich43359922	ProperStrand	1	1	-inf
chr17	92125816	92125906	LINE	L1Md_T	L1	chr17L1Md_T92124359	ProperStrand	1	chr17	92848544	92848644	LINE	Lx8	L1	chr17Lx892847525	NonProperStrand	1	1	-inf
chr5	140180162	140180239	LTR	MTC-int	MaLR	chr5MTC-int140179762	ProperStrand	4	chr5	140179198	140179265	LTR	MTC	MaLR	chr5MTC140179175	ProperStrand	2	1	-20.9262
chr16	47239858	47239948	LTR	RMER6D	ERVK	chr16RMER6D47239847	NonProperStrand	1	chr16	47239670	47239770	Low_complexity	CT-rich	Low_complexity	chr16CT-rich47239614	NonProperStrand	1	1	-inf
chr16	22247240	22249051	protein_coding	Tra2b	intron	ENSMUSG00000022858	ProperStrand	57	chr11	48802411	48803452	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-9.3725
chr10	125092281	125092371	LTR	MTD	MaLR	chr10MTD125092295	ProperStrand	1	chr10	125091209	125091309	LTR	RLTR1C	ERV1	chr10RLTR1C125090909	NonProperStrand	1	1	-inf
chr16	91623489	91624330	protein_coding	Gart	intron	ENSMUSG00000022962	ProperStrand	101	chr18	77546089	77546222	protein_coding	Loxhd1	intron	ENSMUSG00000032818	NonProperStrand	260	1	-8.0432
chr6	86430454	86430482	lincRNA	A430078I02Rik	intron	ENSMUSG00000085589	NonProperStrand	5	chr11	12257137	12257186	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-14.2136
chr16	8767460	8767584	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr5	5007932	5007952	protein_coding	Cdk14	intron	ENSMUSG00000028926	NonProperStrand	14	1	-11.6228
chr9	36265489	36265579	LINE	L1Md_F	L1	chr9L1Md_F36263425	NonProperStrand	1	chr9	35928981	35929081	protein_coding	Gm5916	intron	ENSMUSG00000091411	ProperStrand	2	1	-inf
chr14	30338398	30338487	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	ProperStrand	70	chr16	43524722	43524760	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	1	-8.3315
chr12	66376956	66377056	LINE	Lx8	L1	chr12Lx866376929	ProperStrand	1	chr18	39857945	39858035	LTR	RMER15	ERVL	chr18RMER1539857931	ProperStrand	1	1	-inf
chr16	43383313	43383436	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr1	189126291	189126310	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-9.6127
chr2	18185074	18185145	protein_coding	Dnajc1	intron	ENSMUSG00000026740	NonProperStrand	79	chr11	4381495	4381578	protein_coding	Mtmr3	utr3	ENSMUSG00000034354	ProperStrand	84	1	-10.7927
chr9	123379490	123379524	SINE	B1_Mur1	Alu	chr9B1_Mur1123379437	ProperStrand	1	chr2	5379294	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr4	86605189	86605279	SINE	B1_Mm	Alu	chr4B1_Mm86605194	ProperStrand	2	chr4	86605051	86605151	Simple_repeat	(TTC)n	Simple_repeat	chr4(TTC)n86604711	NonProperStrand	2	2	-inf
chr17	39848615	39848703	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	48449927	48449945	protein_coding	Treml2	utr3	ENSMUSG00000071068	NonProperStrand	4	1	-6.9461
chr15	80078499	80078590	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr5	107904561	107904610	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	2	-10.5586
chr10	40258543	40258584	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr12	76448408	76448459	protein_coding	Rhoj	intron	ENSMUSG00000046768	ProperStrand	46	1	-5.8776
chr15	85177749	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	1	-9.4782
chr17	39846580	39846700	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	14505166	14505183	protein_coding	Smoc2	intron	ENSMUSG00000023886	ProperStrand	2	1	-5.3533
chr17	39847447	39847547	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	117567364	117567454	protein_coding	Tnrc6c	intron	ENSMUSG00000025571	ProperStrand	5	1	-3.2379
chr13	112578188	112578237	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	1	-6.0765
chr13	66441368	66441468	Satellite	MMSAT4	Satellite	chr13MMSAT466441320	NonProperStrand	1	chr13	66441201	66441291	Unknown	MurSatRep1	Unknown	chr13MurSatRep166441150	NonProperStrand	1	1	-inf
chr17	26468398	26468418	LINE	L1MCa	L1	chr17L1MCa26468232	ProperStrand	2	chr1	164450843	164450933	LTR	ORR1A4	MaLR	chr1ORR1A4164450711	ProperStrand	1	1	-inf
chr12	76470974	76471093	protein_coding	Rhoj	intron	ENSMUSG00000046768	ProperStrand	46	chrX	152295211	152295227	protein_coding	Gm15155	intron	ENSMUSG00000055109	ProperStrand	121	1	-11.1494
chr2	59267888	59267978	LTR	RLTR18-int	ERVK	chr2RLTR18-int59267818	ProperStrand	1	chr2	59268081	59268181	SINE	B3	B2	chr2B359268056	ProperStrand	1	1	-inf
chr17	39846299	39846882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	44652470	44737606	protein_coding	Gulp1	intron	ENSMUSG00000056870	ProperStrand	10	2	-3.6091
chr2	177828311	177828411	LINE	Lx	L1	chr2Lx177828262	NonProperStrand	1	chr2	177828530	177828620	Simple_repeat	(GAAA)n	Simple_repeat	chr2(GAAA)n177828461	NonProperStrand	1	1	-inf
chr5	38268985	38269085	LTR	MTA_Mm-int	MaLR	chr5MTA_Mm-int38268652	NonProperStrand	1	chr5	38269466	38269556	LTR	MTA_Mm	MaLR	chr5MTA_Mm38269407	NonProperStrand	1	1	-inf
chr8	31199270	31199367	Simple_repeat	(CATATA)n	Simple_repeat	chr8(CATATA)n31199227	ProperStrand	1	chr10	42856802	42856840	protein_coding	Sobp	intron	ENSMUSG00000038248	ProperStrand	10	1	-inf
chr8	48110706	48110802	protein_coding	Enpp6	intron	ENSMUSG00000038173	ProperStrand	45	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.5396
chr17	39847326	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	144009207	144009269	protein_coding	Zfp12	utr3	ENSMUSG00000029587	NonProperStrand	6	1	-3.9545
chr3	107300277	107300301	protein_coding	Slc6a17	intron	ENSMUSG00000027894	ProperStrand	46	chr7	133734356	133734463	protein_coding	Il27	intron	ENSMUSG00000044701	ProperStrand	6	1	-17.4342
chr10	77054312	77054340	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	ProperStrand	20	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-9.4550
chr7	12930800	12930848	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr11	68973125	68973228	protein_coding	Alox12b	intron	ENSMUSG00000032807	NonProperStrand	15	1	-14.2667
chr1	9464585	9464675	LINE	L1_Rod	L1	chr1L1_Rod9464594	NonProperStrand	1	chr1	9464737	9464837	LTR	RMER17C	ERVK	chr1RMER17C9464753	ProperStrand	1	1	-inf
chr16	4128467	4128540	protein_coding	Crebbp	exon	ENSMUSG00000022521	ProperStrand	81	chr11	97574254	97574337	protein_coding	Psmb3	intron	ENSMUSG00000069744	NonProperStrand	4	1	-17.1700
chr10	47968483	47968573	LINE	Lx4B	L1	chr10Lx4B47967844	NonProperStrand	1	chr10	64241971	64242071	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-inf
chr13	47085865	47085901	LTR	MLT1E2	MaLR	chr13MLT1E247085607	NonProperStrand	2	chr17	39846807	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39847608	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	36976456	36976479	SINE	B1_Mus1	Alu	chr19B1_Mus136976363	NonProperStrand	1	1	-inf
chr8	120569994	120570105	LINE	L1Md_F2	L1	chr8L1Md_F2120567887	ProperStrand	32	chr5	146261021	146261068	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-6.2985
chrX	112405995	112406011	LINE	Lx3C	L1	chrXLx3C112405895	NonProperStrand	1	chr17	39847767	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	5796337	5796427	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr4	117894982	117895027	protein_coding	Ptprf	intron	ENSMUSG00000033295	ProperStrand	98	1	-3.5191
chr4	40996851	40999727	SINE	B1_Mus2	Alu	chr4B1_Mus240996843	ProperStrand	7	chr4	40994115	40996843	protein_coding	Aqp7	intron	ENSMUSG00000028427	NonProperStrand	39	7	-inf
chr5	101851959	101852018	LTR	MTB_Mm	MaLR	chr5MTB_Mm101851686	ProperStrand	1	chr2	102024677	102024733	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-inf
chr11	63148793	63148893	LTR	MTA_Mm-int	MaLR	chr11MTA_Mm-int63147962	ProperStrand	1	chr11	63149125	63149215	LTR	MTA_Mm	MaLR	chr11MTA_Mm63149058	ProperStrand	1	1	-inf
chr8	114763604	114763667	LINE	L1Md_F2	L1	chr8L1Md_F2114763356	NonProperStrand	19	chr8	114755245	114755284	SINE	B1F	Alu	chr8B1F114755133	NonProperStrand	1	1	-inf
chr11	62551551	62552147	LINE	L1VL2	L1	chr11L1VL262549239	NonProperStrand	4	chr17	39847674	39847723	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr1	106227798	106227821	LINE	Lx6	L1	chr1Lx6106227668	ProperStrand	1	chr16	90126933	90127061	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	1	-inf
chr14	55544979	55545022	protein_coding	Efs	utr5	ENSMUSG00000022203	NonProperStrand	8	chr11	96005056	96005129	protein_coding	Ttll6	intron	ENSMUSG00000038756	NonProperStrand	44	1	-16.8109
chr1	122357187	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr18	77780104	77780154	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-6.7114
chr8	107445765	107445860	LINE	L1_Mus2	L1	chr8L1_Mus2107442166	NonProperStrand	4	chr17	39847330	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr5	91353432	91353522	DNA	URR1B	MER1_type	chr5URR1B91353321	ProperStrand	1	chr5	91353135	91353234	LTR	ORR1A2	MaLR	chr5ORR1A291352992	ProperStrand	1	1	-inf
chr17	80594231	80594321	LTR	MTEa	MaLR	chr17MTEa80594174	ProperStrand	1	chr17	80594055	80594155	SINE	RSINE1	B4	chr17RSINE180594018	ProperStrand	1	1	-inf
chrX	7158974	7158990	protein_coding	Ppp1r3f	intron	ENSMUSG00000039556	ProperStrand	6	chr13	81659724	81659853	protein_coding	Gpr98	exon	ENSMUSG00000069170	NonProperStrand	35	1	-17.9023
chr2	35689086	35689200	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	chr2	79292499	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-7.4560
chr1	106189199	106189269	LTR	IAPEz-int	ERVK	chr1IAPEz-int106186503	NonProperStrand	3	chr2	33045685	33045742	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-14.5838
chr17	39846900	39847005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	80913084	80913105	protein_coding	Pdgfc	intron	ENSMUSG00000028019	NonProperStrand	4	1	-3.6552
chr5	47984651	47984668	LTR	MTD	MaLR	chr5MTD47984519	ProperStrand	1	chr19	5800718	5800807	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr17	39843819	39843868	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr3	95944684	95944736	protein_coding	Otud7b	intron	ENSMUSG00000038495	ProperStrand	34	1	-4.0274
chr17	39842996	39843067	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr11	106560970	106561014	protein_coding	Pecam1	exon	ENSMUSG00000020717	ProperStrand	95	1	-4.4992
chr1	39548750	39548836	LINE	Lx5	L1	chr1Lx539548764	NonProperStrand	5	chr4	115811453	115811476	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	1	-18.0374
chr10	11380148	11380248	LINE	Lx8	L1	chr10Lx811380155	ProperStrand	1	chr10	11379937	11380027	LTR	MTB	MaLR	chr10MTB11379762	NonProperStrand	1	1	-inf
chr17	39847622	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	43124750	43124766	protein_coding	Trim29	intron	ENSMUSG00000032013	NonProperStrand	4	1	-3.7035
chr3	90362540	90362685	LTR	RMER19B	ERVK	chr3RMER19B90362196	NonProperStrand	3	chrX	137115483	137115499	protein_coding	Tsc22d3	intron	ENSMUSG00000031431	NonProperStrand	5	1	-inf
chr19	53537189	53537289	lincRNA	5830416P10Rik	intron	ENSMUSG00000074788	NonProperStrand	16	chr19	53537024	53537114	lincRNA	4833407H14Rik	exon	ENSMUSG00000090800	ProperStrand	3	3	-inf
chr17	70963679	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr1	89792745	89792812	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-3.7711
chr11	11259490	11259527	protein_coding	Zpbp	intron	ENSMUSG00000020193	NonProperStrand	7	chr19	8918625	8918695	protein_coding	Bscl2	intron	ENSMUSG00000071657	ProperStrand	17	1	-18.7319
chr11	6673144	6673234	LTR	MLT1C	MaLR	chr11MLT1C6673138	NonProperStrand	6	chr11	6672499	6672599	LTR	MT2B	ERVL	chr11MT2B6672086	ProperStrand	6	6	-inf
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr7	68080064	68080184	LTR	MERVK26-int	ERVK	chr7MERVK26-int68079769	ProperStrand	1	1	-inf
chr17	39847212	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	132634107	132634124	protein_coding	Nsmce1	intron	ENSMUSG00000030750	ProperStrand	3	1	-5.4882
chr19	23154994	23155054	SINE	B2_Mm2	B2	chr19B2_Mm223154927	NonProperStrand	1	chr19	23154770	23154794	Simple_repeat	(TG)n	Simple_repeat	chr19(TG)n23154765	ProperStrand	2	1	-inf
chr2	52976902	52976948	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	chr3	30943765	30943875	protein_coding	Prkci	intron	ENSMUSG00000037643	NonProperStrand	25	1	-11.6010
chr11	17174738	17174855	LINE	L1_Mus1	L1	chr11L1_Mus117174619	NonProperStrand	1	chr17	66119070	66119088	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-inf
chr18	90151119	90151194	LINE	L1_Mus1	L1	chr18L1_Mus190147240	ProperStrand	2	chr16	18257883	18257953	protein_coding	Dgcr8	intron	ENSMUSG00000022718	ProperStrand	60	1	-19.2365
chr7	19561166	19561196	SINE	RSINE1	B4	chr7RSINE119561155	NonProperStrand	1	chr7	19548622	19548738	lincRNA	Gm17370	exon	ENSMUSG00000092034	ProperStrand	10	1	-inf
chr10	93226765	93228734	LTR	ORR1D1	MaLR	chr10ORR1D193228401	ProperStrand	3	chr10	93226082	93226766	SINE	B1_Mus1	Alu	chr10B1_Mus193226656	ProperStrand	2	2	-inf
chr13	44738531	44738674	LTR	ORR1D1	MaLR	chr13ORR1D144738372	ProperStrand	3	chr13	44760856	44760878	SINE	B1_Mm	Alu	chr13B1_Mm44760779	ProperStrand	1	1	-inf
chr4	8586497	8586524	LINE	L1Md_T	L1	chr4L1Md_T8581510	NonProperStrand	2	chr17	35838036	35838053	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	1	-16.7631
chr2	4864236	4864326	LTR	MTA_Mm	MaLR	chr2MTA_Mm4864248	NonProperStrand	1	chr2	4864074	4864174	LTR	RNLTR23	ERVK	chr2RNLTR234864079	NonProperStrand	1	1	-inf
chr1	177178619	177178639	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	chr13	36052979	36053119	protein_coding	Ppp1r3g	intron	ENSMUSG00000050423	NonProperStrand	17	1	-13.8836
chr3	19227074	19227265	LINE	L1MA4	L1	chr3L1MA419227036	ProperStrand	2	chr17	39846471	39846829	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr9	103354625	103354750	protein_coding	Bfsp2	intron	ENSMUSG00000032556	ProperStrand	72	chr2	155459078	155459169	protein_coding	Myh7b	intron	ENSMUSG00000074652	NonProperStrand	20	2	-inf
chr10	43422112	43422294	LTR	MLT1A1	MaLR	chr10MLT1A143422129	NonProperStrand	4	chr10	43422015	43422153	LTR	MTA_Mm	MaLR	chr10MTA_Mm43421734	NonProperStrand	7	4	-inf
chr4	155177898	155177988	protein_coding-noncoding	Mrpl20	utr5	ENSMUSG00000029066	NonProperStrand	4	chr4	155177733	155177833	protein_coding	Mrpl20	utr5	ENSMUSG00000029066	NonProperStrand	18	4	-inf
chr15	103242705	103243657	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	chr16	78317591	78317648	protein_coding	Cxadr	intron	ENSMUSG00000022865	ProperStrand	34	1	-12.9188
chr6	86554345	86554435	SINE	B2_Mm2	B2	chr6B2_Mm286554258	NonProperStrand	2	chr6	86554460	86554560	SINE	B3	B2	chr6B386554452	NonProperStrand	2	2	-inf
chr1	72608010	72608084	LTR	MTEb	MaLR	chr1MTEb72607969	ProperStrand	1	chr2	5379270	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr13	62548968	62549068	LTR	ETnERV2-int	ERVK	chr13ETnERV2-int62548977	NonProperStrand	3	chr14	79862411	79862501	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	30	1	-19.4498
chr18	8017586	8017690	LTR	IAPEz-int	ERVK	chr18IAPEz-int8011897	NonProperStrand	1	chr2	131919426	131919450	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-inf
chr14	17519289	17519308	protein_coding	Rarb	intron	ENSMUSG00000017491	ProperStrand	11	chr9	62811693	62811755	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-14.2543
chr5	34279547	34279612	SINE	B1_Mus1	Alu	chr5B1_Mus134279510	ProperStrand	1	chr5	34258331	34258416	protein_coding	Whsc2	intron	ENSMUSG00000029111	ProperStrand	83	1	-inf
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	23395922	23396027	protein_coding	Ahsa2	intron	ENSMUSG00000020288	NonProperStrand	2	1	-5.3533
chr2	135720796	135720914	protein_coding	Plcb4	intron	ENSMUSG00000039943	ProperStrand	126	chr6	22044673	22044690	protein_coding	A430107O13Rik	intron	ENSMUSG00000062980	ProperStrand	20	1	-12.7606
chr18	67112272	67112290	LINE	L1Md_F2	L1	chr18L1Md_F267111538	ProperStrand	1	chr17	39846580	39846715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	57955318	57955337	protein_coding	Spats2l	intron	ENSMUSG00000038305	ProperStrand	17	chr2	160483144	160483161	protein_coding	Top1	intron	ENSMUSG00000070544	NonProperStrand	4	1	-inf
chr7	97609720	97609792	LTR	RLTR26	ERVK	chr7RLTR2697609502	NonProperStrand	3	chrX	73020953	73028885	SINE	B4A	B4	chrXB4A73028837	NonProperStrand	1	1	-inf
chr3	152756304	152756377	LINE	L1Md_T	L1	chr3L1Md_T152755452	ProperStrand	1	chr1	24048235	24048267	protein_coding	Fam135a	intron	ENSMUSG00000026153	ProperStrand	12	1	-inf
chr18	3063094	3063184	LTR	MTA_Mm	MaLR	chr18MTA_Mm3062968	NonProperStrand	2	chr15	72994498	72994598	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	2	-inf
chr9	21809534	21809575	protein_coding	Prkcsh	intron	ENSMUSG00000003402	NonProperStrand	41	chr9	21804730	21804781	protein_coding	Ccdc151	intron	ENSMUSG00000039632	ProperStrand	87	2	-19.0567
chr3	20001115	20001215	protein_coding	Hltf	intron	ENSMUSG00000002428	ProperStrand	2	chr3	20030479	20030569	protein_coding	Gyg	intron	ENSMUSG00000019528	NonProperStrand	2	1	-19.8939
chr11	88582504	88582543	lincRNA	C030037D09Rik	exon	ENSMUSG00000087574	NonProperStrand	108	chr7	138338119	138338164	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-7.6726
chr5	138610902	138611021	protein_coding	Mcm7	utr5	ENSMUSG00000029730	ProperStrand	4	chr13	20436742	20436772	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	2	-inf
chr2	144174157	144174258	LINE	L1_Mus4	L1	chr2L1_Mus4144174117	NonProperStrand	1	chr2	144174404	144174494	SINE	B3A	B2	chr2B3A144174382	ProperStrand	1	1	-inf
chr11	71091295	71091396	polymorphic_pseudogene	Nlrp1c-ps	.	ENSMUSG00000092528	NonProperStrand	5	chr18	35378381	35378414	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	1	-15.8283
chr7	12930796	12930840	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr2	167065003	167065084	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-10.8404
chr3	75621447	75621471	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr17	39846410	39847052	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	7	-5.4073
chr17	39847767	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	67467822	67467854	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n67467822	ProperStrand	2	1	-5.4040
chr2	148684147	148684198	protein_coding	9230104L09Rik	intron	ENSMUSG00000027446	NonProperStrand	16	chr1	180895942	180896014	protein_coding	Smyd3	intron	ENSMUSG00000055067	NonProperStrand	144	1	-12.9517
chrX	99468072	99468155	lincRNA	Gm14858	intron	ENSMUSG00000085568	NonProperStrand	9	chr13	112578195	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-7.9977
chr17	39848158	39848212	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	83054394	83054457	protein_coding	Ccdc142	intron	ENSMUSG00000079511	NonProperStrand	4	2	-11.2882
chr10	12810569	12810637	protein_coding	Plagl1	utr5	ENSMUSG00000019817	NonProperStrand	27	chr18	75382785	75382840	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-9.4811
chr11	109011792	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	57518908	57545593	protein_coding	Galnt10	intron	ENSMUSG00000020520	ProperStrand	49	2	-10.5205
chr11	69684521	69684665	SINE	B2_Mm2	B2	chr11B2_Mm269684512	ProperStrand	1	chr11	69684716	69685048	SINE	B2_Mm2	B2	chr11B2_Mm269684709	ProperStrand	1	1	-inf
chr10	22821166	22821185	LINE	L2a	L2	chr10L2a22821072	ProperStrand	1	chr18	37922624	37922695	lincRNA	Gm16882	intron	ENSMUSG00000085906	ProperStrand	27	1	-inf
chr15	76905950	76906136	DNA	Ricksha_0	MuDR	chr15Ricksha_076905943	ProperStrand	2	chr15	76906157	76906253	SINE	B1_Mur1	Alu	chr15B1_Mur176906120	ProperStrand	10	2	-inf
chr17	28823998	28828365	protein_coding	Slc26a8	intron	ENSMUSG00000036196	NonProperStrand	90	chr17	28828406	28831378	protein_coding	Mapk14	intron	ENSMUSG00000053436	ProperStrand	28	9	-inf
chr11	32658542	32658610	SINE	B2_Mm2	B2	chr11B2_Mm232658522	ProperStrand	1	chr15	98568444	98568469	protein_coding	Arf3	utr3	ENSMUSG00000051853	ProperStrand	4	1	-inf
chr9	77452258	77452299	LINE	L1_Rod	L1	chr9L1_Rod77452249	ProperStrand	1	chr7	134675971	134676039	protein_coding	Srcap	intron	ENSMUSG00000053877	ProperStrand	9	1	-inf
chr4	101117009	101117109	protein_coding	Ak4	intron	ENSMUSG00000028527	NonProperStrand	3	chr15	72994502	72994592	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	1	-18.1712
chr10	116213025	116213042	LTR	MER74B	ERVL	chr10MER74B116213002	ProperStrand	1	chr17	39848008	39848072	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr5	121205018	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-4.4986
chr5	31800145	31800245	protein_coding-noncoding	Gpn1	utr5	ENSMUSG00000064037	ProperStrand	2	chr5	31800011	31800101	protein_coding	Gpn1	utr3	ENSMUSG00000064037	ProperStrand	6	1	-inf
chr18	32067951	32067967	protein_coding	Wdr33	utr3	ENSMUSG00000024400	ProperStrand	3	chr1	16102704	16102730	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	1	-17.9119
chr13	3590057	3590125	protein_coding	BC016423	intron	ENSMUSG00000033799	ProperStrand	11	chr10	21999053	21999131	protein_coding	H60b	intron	ENSMUSG00000075297	ProperStrand	30	1	-16.8752
chr16	32064893	32064986	protein_coding	Pak2	intron	ENSMUSG00000022781	ProperStrand	40	chr1	38261199	38261247	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	1	-10.7981
chr4	123127175	123127282	protein_coding	Macf1	intron	ENSMUSG00000028649	ProperStrand	35	chr8	3946190	3946232	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	1	-16.6073
chr13	21161441	21161480	LINE	L1_Rod	L1	chr13L1_Rod21161141	NonProperStrand	2	chr5	110166385	110166412	protein_coding	4930522L14Rik	exon	ENSMUSG00000072762	NonProperStrand	14	1	-19.5799
chr4	43492916	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	chr13	97190585	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0707
chr16	91523866	91523966	LINE	Lx7	L1	chr16Lx791523879	ProperStrand	1	chr16	91523673	91523763	SINE	B3A	B2	chr16B3A91523685	ProperStrand	1	1	-inf
chr9	3189637	3189727	protein_coding	4930433N12Rik	intron	ENSMUSG00000042360	ProperStrand	2	chr8	13835449	13835550	protein_coding	AF366264	utr3	ENSMUSG00000057116	NonProperStrand	5	1	-inf
chr10	83393004	83393055	LTR	RMER17C-int	ERVK	chr10RMER17C-int83391239	ProperStrand	9	chr17	30595057	30595145	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-11.1138
chr11	108874405	108874495	DNA	RMER30	MER1_type	chr11RMER30108874409	NonProperStrand	2	chr11	108874504	108874604	LINE	Lx3_Mus	L1	chr11Lx3_Mus108874527	NonProperStrand	2	2	-inf
chr17	39847249	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	87924496	87924553	protein_coding	Spata3	intron	ENSMUSG00000026226	ProperStrand	8	1	-3.3803
chr9	20907360	20908565	antisense	1700084C06Rik	.	ENSMUSG00000086016	NonProperStrand	24	chr9	20908522	20917304	protein_coding	Tyk2	utr3	ENSMUSG00000032175	ProperStrand	108	7	-inf
chr1	170745666	170745728	LINE	Lx6	L1	chr1Lx6170745389	ProperStrand	1	chr17	39847611	39847663	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	51711351	51711376	LTR	MTE2b	MaLR	chr13MTE2b51711346	ProperStrand	1	chr17	39847656	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	96465926	96465944	LINE	L1MDa	L1	chrXL1MDa96465899	NonProperStrand	1	chr11	120953791	120953899	pseudogene	Gm11792	.	ENSMUSG00000083137	NonProperStrand	15	1	-inf
chr12	67667896	67667986	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	chr18	20564654	20564754	protein_coding	Dsg1b	intron	ENSMUSG00000061928	ProperStrand	9	2	-inf
chrX	74230131	74230373	LINE	MusHAL1	L1	chrXMusHAL174230289	NonProperStrand	3	chr9	104161734	104161824	protein_coding	Dnajc13	intron	ENSMUSG00000032560	ProperStrand	36	1	-19.7959
chr16	50989468	50989568	LINE	L1Md_F2	L1	chr16L1Md_F250988614	NonProperStrand	1	chr16	50989710	50989800	SINE	B2_Mm2	B2	chr16B2_Mm250989687	NonProperStrand	1	1	-inf
chr11	74724738	74724858	protein_coding	Srr	intron	ENSMUSG00000001323	ProperStrand	6	chr8	61372747	61372764	protein_coding	Galntl6	intron	ENSMUSG00000061864	ProperStrand	140	1	-15.0866
chr17	39848162	39848300	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	120421195	120421212	Simple_repeat	(TATG)n	Simple_repeat	chr8(TATG)n120421146	NonProperStrand	3	2	-12.6633
chr17	20965727	20965795	LINE	L1_Mur3	L1	chr17L1_Mur320964963	ProperStrand	24	chr8	84479471	84479548	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-8.3525
chr18	14719106	14719163	LINE	L1_Mus2	L1	chr18L1_Mus214716022	ProperStrand	2	chr9	123462115	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	26163225	26163315	LTR	ORR1E	MaLR	chr13ORR1E26163124	NonProperStrand	3	chr13	26162963	26163063	Low_complexity	A-rich	Low_complexity	chr13A-rich26162976	NonProperStrand	3	3	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	40803994	40804082	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-3.4379
chr5	138595978	138595998	protein_coding	Zfp113	intron	ENSMUSG00000037007	NonProperStrand	2	chr19	9017336	9017366	protein_coding	Mta2	intron	ENSMUSG00000071646	ProperStrand	23	1	-20.7239
chr19	55547551	55547605	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	chr8	70896132	70896182	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	2	-12.0799
chr1	72033250	72033340	LTR	RLTR20B1	ERVK	chr1RLTR20B172033092	NonProperStrand	1	chr1	72032944	72033044	LTR	RLTR28	ERVL	chr1RLTR2872032915	NonProperStrand	1	1	-inf
chr4	55540695	55540788	protein_coding	Klf4	utr3	ENSMUSG00000003032	NonProperStrand	5	chr14	102193177	102193195	protein_coding	Lmo7	intron	ENSMUSG00000033060	NonProperStrand	6	1	-inf
chr11	101604938	101605020	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	chr9	21397603	21397655	protein_coding	1810026J23Rik	exon	ENSMUSG00000048429	ProperStrand	26	1	-14.1696
chr6	67214953	67215023	SINE	B4A	B4	chr6B4A67214856	NonProperStrand	1	chr13	97190550	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr5	146261267	146261316	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	115811453	115811485	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	1	-8.5452
chrX	133415954	133416054	LINE	L2	L2	chrXL2133415902	ProperStrand	1	chrX	133415639	133415729	SINE	B4A	B4	chrXB4A133415592	ProperStrand	1	1	-inf
chr11	40724180	40724214	LINE	L1Md_A	L1	chr11L1Md_A40722905	NonProperStrand	1	chr17	39847172	39847218	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr6	125486957	125487069	DNA	Tigger7	MER2_type	chr6Tigger7125486924	NonProperStrand	3	chr6	125487062	125487153	SINE	B1F1	Alu	chr6B1F1125487081	ProperStrand	3	3	-inf
chr13	104193378	104193478	LINE	L1Md_A	L1	chr13L1Md_A104190823	ProperStrand	3	chr11	20312869	20312899	LTR	ORR1A4-int	MaLR	chr11ORR1A4-int20312728	NonProperStrand	1	1	-inf
chr2	177478897	177478987	LINE	L1VL1	L1	chr2L1VL1177476150	ProperStrand	8	chr2	178036464	178036564	protein_coding	Phactr3	intron	ENSMUSG00000027525	ProperStrand	26	2	-inf
chr7	135693702	135693802	LTR	MTB	MaLR	chr7MTB135693434	ProperStrand	1	chr7	135693884	135693974	SINE	MIR	MIR	chr7MIR135693835	NonProperStrand	1	1	-inf
chr17	39845554	39845609	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	30344825	30344890	SINE	B1_Mur1	Alu	chr2B1_Mur130344743	NonProperStrand	1	1	-inf
chr5	134621245	134621326	SINE	B1_Mus1	Alu	chr5B1_Mus1134621169	NonProperStrand	6	chr11	95668081	95668134	protein_coding	Zfp652	intron	ENSMUSG00000075595	ProperStrand	82	1	-16.1815
chr6	146909306	146909393	protein_coding	Ppfibp1	intron	ENSMUSG00000016487	ProperStrand	32	chr1	65226196	65226249	protein_coding	Idh1	intron	ENSMUSG00000025950	NonProperStrand	12	1	-16.5741
chr3	105051019	105051112	LINE	L1Md_F2	L1	chr3L1Md_F2105049474	NonProperStrand	4	chr4	121148986	121149014	LTR	RMER2	ERV1	chr4RMER2121148786	ProperStrand	5	1	-inf
chr1	10105973	10106062	protein_coding-noncoding	Cspp1	utr5	ENSMUSG00000056763	ProperStrand	1	chr9	119068450	119069947	protein_coding	Gm10608	exon	ENSMUSG00000074029	ProperStrand	2	1	-inf
chr8	43304852	43304888	LINE	L1_Mus3	L1	chr8L1_Mus343304788	NonProperStrand	1	chr18	36575655	36575742	protein_coding	Pfdn1	intron	ENSMUSG00000024346	NonProperStrand	30	1	-inf
chr17	46784454	46784544	protein_coding-noncoding	Mrpl2	utr5	ENSMUSG00000002767	ProperStrand	1	chr17	46784570	46784671	protein_coding	Mrpl2	intron	ENSMUSG00000002767	ProperStrand	1	1	-inf
chr6	42162522	42162622	LINE	L1Md_T	L1	chr6L1Md_T42156408	ProperStrand	1	chr8	9358045	9358135	protein_coding	Fam155a	intron	ENSMUSG00000079157	ProperStrand	16	1	-inf
chr3	95233502	95233561	lincRNA	Gm4349	exon	ENSMUSG00000091761	ProperStrand	9	chr16	4648408	4648495	protein_coding	Coro7	intron	ENSMUSG00000039637	ProperStrand	312	1	-12.6065
chr10	81109474	81109574	protein_coding-noncoding	Ankrd24	utr5	ENSMUSG00000054708	ProperStrand	3	chr10	81109324	81109676	protein_coding	Ankrd24	intron	ENSMUSG00000054708	ProperStrand	17	3	-inf
chr8	127579479	127579525	protein_coding	Disc1	intron	ENSMUSG00000043051	ProperStrand	29	chr13	97190562	97190598	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.5556
chr1	181824130	181824250	LTR	IAPLTR2a	ERVK	chr1IAPLTR2a181824038	NonProperStrand	7	chr5	146261164	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-9.4279
chr11	70652033	70652065	LINE	L1M4	L1	chr11L1M470651982	ProperStrand	2	chrY	1265146	1265585	Other	C573_MM	Other	chrYC573_MM1264968	ProperStrand	3	1	-20.8297
chr6	92175646	92175736	LTR	MLT1D	MaLR	chr6MLT1D92175643	NonProperStrand	5	chr6	92175539	92175639	SINE	B3	B2	chr6B392175564	NonProperStrand	5	5	-inf
chr17	39846703	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	46812585	46812661	SINE	MIR	MIR	chr14MIR46812449	ProperStrand	1	1	-inf
chr17	39846336	39846411	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	147422743	147422791	protein_coding	Mthfr	intron	ENSMUSG00000029009	ProperStrand	3	1	-4.3017
chr13	93448911	93449001	protein_coding	Serinc5	intron	ENSMUSG00000021703	NonProperStrand	22	chr15	34440510	34441237	protein_coding	Pop1	intron	ENSMUSG00000022325	ProperStrand	1	1	-inf
chr18	60728538	60728563	protein_coding-noncoding	Rbm22	utr5	ENSMUSG00000024604	NonProperStrand	6	chr13	97190561	97190603	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr1	122357187	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr4	54963455	54963541	protein_coding	Zfp462	intron	ENSMUSG00000060206	ProperStrand	174	1	-6.7892
chr2	22744863	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	172500277	172505137	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	1	-4.7842
chr8	12982802	12982894	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	chr5	129697858	129697874	protein_coding	Gpr133	intron	ENSMUSG00000044017	ProperStrand	9	1	-12.5128
chr3	64029788	64029888	LINE	L1M5	L1	chr3L1M564029722	ProperStrand	1	chr3	64066480	64066570	protein_coding	Vmn2r3	intron	ENSMUSG00000091572	NonProperStrand	5	1	-inf
chr5	146261273	146261303	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr7	135053100	135053136	protein_coding	Bckdk	utr3	ENSMUSG00000030802	ProperStrand	5	1	-13.0367
chr4	155179099	155179126	protein_coding	Mrpl20	intron	ENSMUSG00000029066	NonProperStrand	18	chr4	32806640	32808698	protein_coding	Mdn1	intron	ENSMUSG00000058006	NonProperStrand	27	1	-16.0811
chr7	89840627	89840754	protein_coding	Eftud1	intron	ENSMUSG00000038563	NonProperStrand	15	chr2	77044761	77044778	protein_coding	Sestd1	intron	ENSMUSG00000042272	ProperStrand	17	1	-17.4258
chr1	184882855	184882871	DNA	Tigger5	MER2_type	chr1Tigger5184882834	ProperStrand	1	chr9	123462082	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	39097349	39097449	LTR	RMER12	ERVK	chr14RMER1239097177	ProperStrand	1	chr14	39097558	39097648	LTR	RMER12	ERVK	chr14RMER1239097505	ProperStrand	1	1	-inf
chr16	58885866	58885956	LINE	Lx	L1	chr16Lx58885883	NonProperStrand	1	chr16	58885604	58885704	LINE	Lx9	L1	chr16Lx958885365	ProperStrand	1	1	-inf
chr1	164480981	164481071	LINE	Lx7	L1	chr1Lx7164480569	NonProperStrand	1	chr1	164481278	164481378	LTR	ORR1B1	MaLR	chr1ORR1B1164481053	NonProperStrand	1	1	-inf
chr2	38552901	38552964	protein_coding	Nr5a1	intron	ENSMUSG00000026751	NonProperStrand	26	chr2	166426465	166426518	protein_coding	Prex1	intron	ENSMUSG00000039621	ProperStrand	25	1	-15.5020
chr13	93535207	93535307	protein_coding	Thbs4	intron	ENSMUSG00000021702	NonProperStrand	2	chr14	79862360	79862450	protein_coding	Wbp4	intron	ENSMUSG00000022023	ProperStrand	22	1	-21.6660
chr17	39846415	39846693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	108562282	108562335	SINE	B2_Mm1a	B2	chr9B2_Mm1a108562216	ProperStrand	8	2	-4.2675
chr10	127064673	127064889	Low_complexity	CT-rich	Low_complexity	chr10CT-rich127064837	ProperStrand	4	chr10	127064443	127064626	SINE	B2_Mm2	B2	chr10B2_Mm2127064555	ProperStrand	1	1	-inf
chr15	47163500	47163590	LINE	L1_Mur1	L1	chr15L1_Mur147163305	NonProperStrand	1	chr15	47163622	47163722	SINE	RSINE1	B4	chr15RSINE147163642	ProperStrand	1	1	-inf
chr3	138478919	138480750	protein_coding	Tspan5	intron	ENSMUSG00000028152	NonProperStrand	34	chr13	97190563	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.2385
chr2	160955004	160955079	SINE	B4	B4	chr2B4160954983	ProperStrand	1	chr7	109519206	109519642	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-inf
chr16	35981615	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr12	71276804	71276897	protein_coding	Abhd12b	intron	ENSMUSG00000090121	ProperStrand	10	1	-13.5533
chr4	98728343	98728395	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	chr15	58443194	58443267	protein_coding	Fer1l6	intron	ENSMUSG00000037106	ProperStrand	38	1	-11.7452
chr1	89540024	89541341	protein_coding-noncoding	Inpp5d	utr5	ENSMUSG00000026288	ProperStrand	11	chr1	89524484	89560063	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	4	-21.0700
chr2	22744837	22744903	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	5026933	5027018	protein_coding	U2af2	intron	ENSMUSG00000030435	ProperStrand	28	1	-8.3352
chr15	77201158	77201211	LTR	RMER21B	ERV1	chr15RMER21B77200842	NonProperStrand	3	chr15	77202168	77202254	LTR	RodERV21-int	ERV1	chr15RodERV21-int77201564	NonProperStrand	8	2	-21.0103
chr17	39846025	39846110	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	52104925	52104953	protein_coding	Foxo1	intron	ENSMUSG00000044167	ProperStrand	6	1	-6.3814
chr8	31148436	31148467	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr3	85989869	85989943	LTR	ORR1A2	MaLR	chr3ORR1A285989693	NonProperStrand	5	1	-16.7357
chr8	117589314	117589886	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr3	116640394	116641250	protein_coding	Palmd	intron	ENSMUSG00000033377	ProperStrand	33	2	-11.7594
chr16	27995755	27995855	LINE	L1Md_F2	L1	chr16L1Md_F227991419	ProperStrand	1	chr16	27996029	27996119	LINE	L1Md_F2	L1	chr16L1Md_F227996049	ProperStrand	1	1	-inf
chr6	82740192	82740258	LTR	ORR1A3-int	MaLR	chr6ORR1A3-int82740177	ProperStrand	1	chr6	82740049	82740091	SINE	B1_Mur3	Alu	chr6B1_Mur382740000	ProperStrand	1	1	-inf
chr17	6215994	6216079	protein_coding	Tulp4	intron	ENSMUSG00000034377	ProperStrand	56	chr1	136500909	136500944	protein_coding	Kdm5b	intron	ENSMUSG00000042207	ProperStrand	42	1	-12.8821
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	142872450	142878688	SINE	B1F2	Alu	chr5B1F2142872434	ProperStrand	1	1	-inf
chr17	31092401	31094674	protein_coding	Umodl1	intron	ENSMUSG00000054134	ProperStrand	35	chr5	67817205	67817294	protein_coding	Bend4	intron	ENSMUSG00000092060	ProperStrand	30	1	-14.5134
chr17	39848099	39848144	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr12	113164871	113164965	SINE	MIR	MIR	chr12MIR113164829	NonProperStrand	1	1	-inf
chr11	109011723	109011765	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	30880463	30880516	protein_coding	Asb3	intron	ENSMUSG00000020305	ProperStrand	38	1	-7.0062
chr7	126556459	126556497	LTR	IAPLTR1_Mm	ERVK	chr7IAPLTR1_Mm126556244	ProperStrand	9	chr11	88362577	88362691	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-10.1222
chr17	39847658	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	23225854	23225921	LTR	RMER15	ERVL	chrXRMER1523225535	ProperStrand	1	1	-inf
chr6	108820847	108820883	LINE	Lx7	L1	chr6Lx7108820840	NonProperStrand	1	chr6	108822041	108822160	LTR	RMER13A	ERVK	chr6RMER13A108822044	ProperStrand	3	1	-inf
chr3	154019187	154019275	LINE	L1Md_F	L1	chr3L1Md_F154018811	NonProperStrand	1	chr3	154019871	154019912	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n154019860	ProperStrand	1	1	-inf
chr11	95957279	95957330	LINE	L1Md_F2	L1	chr11L1Md_F295957017	ProperStrand	3	chr17	39847776	39847843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chrX	13771739	13771829	LINE	L1Md_T	L1	chrXL1Md_T13767784	ProperStrand	1	chr18	3515224	3515324	protein_coding	Bambi	utr3	ENSMUSG00000024232	ProperStrand	4	1	-inf
chr9	96214924	96214998	protein_coding	Tfdp2	intron	ENSMUSG00000032411	ProperStrand	65	chr11	33156745	33156829	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-7.2833
chr4	139450402	139450492	SINE	B1_Mus1	Alu	chr4B1_Mus1139450346	NonProperStrand	2	chr4	139450509	139451312	SINE	ID_B1	B4	chr4ID_B1139451158	NonProperStrand	2	2	-inf
chr12	51629466	51633580	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	chr8	122532740	122532848	protein_coding	Crispld2	intron	ENSMUSG00000031825	NonProperStrand	122	1	-9.8509
chr6	125162607	125162874	LINE	L1MEd	L1	chr6L1MEd125162471	ProperStrand	31	chr10	63315257	63315278	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-11.0759
chr10	66191883	66191973	LTR	IAPEz-int	ERVK	chr10IAPEz-int66185568	NonProperStrand	2	chr10	66191986	66192086	LTR	IAPLTR1a_Mm	ERVK	chr10IAPLTR1a_Mm66192013	NonProperStrand	2	2	-inf
chr2	27367459	27367559	LTR	RLTR13C1	ERVK	chr2RLTR13C127367427	ProperStrand	1	chr2	27367362	27367452	SINE	B1_Mus1	Alu	chr2B1_Mus127367327	NonProperStrand	1	1	-inf
chr2	173023926	173024016	LINE	Lx6	L1	chr2Lx6173020646	ProperStrand	16	chr2	173024011	173024111	Simple_repeat	(GAAA)n	Simple_repeat	chr2(GAAA)n173024038	ProperStrand	4	4	-inf
chr12	98612113	98612213	LINE	L1_Mm	L1	chr12L1_Mm98610408	ProperStrand	1	chr12	98612238	98612328	LINE	L1_Mus4	L1	chr12L1_Mus498612194	NonProperStrand	1	1	-inf
chrX	130361667	130361722	SINE	ID_B1	B4	chrXID_B1130361529	ProperStrand	1	chr13	112578184	112578249	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr11	119753146	119753215	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	231	chr6	33758756	33758812	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-4.1948
chr11	88672631	88672724	SINE	PB1D9	Alu	chr11PB1D988672605	NonProperStrand	3	chr11	88672456	88672485	SINE	RSINE1	B4	chr11RSINE188672435	NonProperStrand	2	1	-20.2824
chr13	62763199	62763294	LTR	IAPEz-int	ERVK	chr13IAPEz-int62761133	ProperStrand	2	chr17	39846818	39846841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr1	33459027	33459117	DNA	Charlie2b	MER1_type	chr1Charlie2b33459023	NonProperStrand	1	chr17	39846400	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846453	39846508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	45782778	45782814	Simple_repeat	(TCTCTG)n	Simple_repeat	chr19(TCTCTG)n45782686	NonProperStrand	1	1	-inf
chr13	52536259	52536349	SINE	B1F	Alu	chr13B1F52536248	ProperStrand	1	chr13	52535682	52535782	SINE	B4A	B4	chr13B4A52535604	NonProperStrand	1	1	-inf
chr1	113707432	113707532	LTR	MT2A	ERVL	chr1MT2A113707199	NonProperStrand	1	chr7	103550498	103550588	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-inf
chr1	132504426	132504443	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	chr17	30048884	30048981	protein_coding	Mdga1	intron	ENSMUSG00000043557	NonProperStrand	98	1	-12.5793
chr1	43761232	43761276	LINE	L1Md_F2	L1	chr1L1Md_F243760956	ProperStrand	1	chr13	44869952	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr5	66554241	66554263	lincRNA	Gm16885	intron	ENSMUSG00000086102	ProperStrand	3	chr17	47505813	47505900	protein_coding	Mrps10	utr5	ENSMUSG00000034729	ProperStrand	8	1	-20.8155
chr6	112618236	112618354	protein_coding	Rad18	intron	ENSMUSG00000030254	ProperStrand	76	chr5	142477911	142477947	protein_coding	Sdk1	intron	ENSMUSG00000039683	NonProperStrand	86	1	-10.8231
chr13	23665955	23666055	protein_coding	Hist1h2bf	exon	ENSMUSG00000069268	ProperStrand	1	chr13	23666235	23666325	protein_coding	Hist1h2ad	utr5	ENSMUSG00000071478	NonProperStrand	1	1	-inf
chr8	69981325	69981425	LINE	L1M3e	L1	chr8L1M3e69981324	ProperStrand	1	chr8	69981214	69981304	LTR	ORR1C1	MaLR	chr8ORR1C169981108	ProperStrand	1	1	-inf
chrX	38408414	38408471	LINE	Lx8	L1	chrXLx838408069	ProperStrand	1	chr17	39847856	39847959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	120130873	120131021	LTR	ORR1E	MaLR	chr9ORR1E120130701	ProperStrand	44	chr14	118640964	118641054	lincRNA	Gm4675	intron	ENSMUSG00000090534	NonProperStrand	19	1	-14.9789
chr18	6488763	6508620	protein_coding	Epc1	intron	ENSMUSG00000024240	ProperStrand	56	chr9	123461871	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	3	-4.1017
chr9	97092326	97092426	LTR	MLT2B1	ERVL	chr9MLT2B197092211	ProperStrand	4	chr9	97092423	97092513	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n97092421	NonProperStrand	7	3	-inf
chr16	35981730	35981790	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr6	122731503	122731557	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-7.1176
chr2	22744862	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	91256906	91256923	protein_coding	1110051M20Rik	intron	ENSMUSG00000040591	NonProperStrand	44	1	-7.4264
chr12	78350926	78351043	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr7	142791375	142791400	protein_coding	Ptpre	intron	ENSMUSG00000041836	NonProperStrand	2	1	-13.3250
chr5	146260994	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	150242144	150244014	protein_coding	Errfi1	utr3	ENSMUSG00000028967	ProperStrand	111	1	-3.8904
chr4	63423222	63423250	LINE	Lx9	L1	chr4Lx963422922	NonProperStrand	4	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-17.8498
chr12	111050473	111050573	LINE	Lx7	L1	chr12Lx7111050430	NonProperStrand	3	chr12	111050361	111050451	LINE	Lx9	L1	chr12Lx9111049736	NonProperStrand	4	2	-inf
chr13	87828713	87828732	LINE	L1_Mus2	L1	chr13L1_Mus287827059	NonProperStrand	1	chr13	29970895	29971007	SINE	B3	B2	chr13B329970864	NonProperStrand	1	1	-inf
chr7	128769844	128769935	LINE	L1MC4a	L1	chr7L1MC4a128769530	ProperStrand	2	chr7	128770698	128770798	LTR	MLT1A0	MaLR	chr7MLT1A0128770686	ProperStrand	2	2	-inf
chr8	12853941	12853972	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	135	chr9	110281287	110281328	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-5.9590
chr5	108092109	108104119	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr5	108080856	108092068	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	4	-20.0951
chrX	103360239	103360339	DNA	MER45R	Tip100	chrXMER45R103360266	NonProperStrand	1	chrX	103360141	103360231	SINE	B1_Mur1	Alu	chrXB1_Mur1103360167	ProperStrand	1	1	-inf
chr7	34710300	34710400	LINE	L1VL2	L1	chr7L1VL234709973	NonProperStrand	7	chr7	34710441	34710531	LINE	MusHAL1	L1	chr7MusHAL134710395	NonProperStrand	11	7	-inf
chr1	43481970	43482070	DNA	URR1B	MER1_type	chr1URR1B43481949	NonProperStrand	7	chr1	43481870	43481960	SINE	B1_Mur1	Alu	chr1B1_Mur143481872	ProperStrand	7	7	-inf
chr19	41918356	41918393	SINE	B1_Mur2	Alu	chr19B1_Mur241918354	ProperStrand	1	chr19	41918513	41918574	SINE	B4A	B4	chr19B4A41918439	ProperStrand	6	1	-inf
chr17	39846284	39847170	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	19883802	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	42	-13.6547
chr8	39440094	39440184	protein_coding	Sgcz	intron	ENSMUSG00000039539	ProperStrand	13	chr8	44768939	44769039	protein_coding	Adam34	intron	ENSMUSG00000079058	NonProperStrand	3	1	-22.9476
chrX	61549356	61549456	LINE	L1M3	L1	chrXL1M361549361	NonProperStrand	1	chrX	61549620	61549710	LTR	MTD	MaLR	chrXMTD61549613	NonProperStrand	1	1	-inf
chr3	47704681	47704781	LINE	L1_Mus4	L1	chr3L1_Mus447704682	NonProperStrand	1	chr3	47704448	47704538	Simple_repeat	(TCTA)n	Simple_repeat	chr3(TCTA)n47704432	ProperStrand	1	1	-inf
chr14	21512122	21512149	protein_coding	Sec24c	intron	ENSMUSG00000039367	ProperStrand	81	chr13	58394666	58394724	protein_coding	Kif27	intron	ENSMUSG00000060176	ProperStrand	75	1	-10.9701
chr2	22933593	22933683	protein_coding	Acbd5	intron	ENSMUSG00000026781	ProperStrand	6	chr2	156258431	156258531	protein_coding	Epb4.1l1	intron	ENSMUSG00000027624	ProperStrand	54	1	-16.9865
chr4	12047558	12047658	LINE	L1_Mur2	L1	chr4L1_Mur212046761	NonProperStrand	1	chr4	12047665	12047755	SINE	B1_Mus1	Alu	chr4B1_Mus112047673	NonProperStrand	1	1	-inf
chr11	100835172	100835272	SINE	B2_Mm2	B2	chr11B2_Mm2100835137	NonProperStrand	2	chr14	24495241	24495331	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	2	-inf
chr10	91155349	91155439	LTR	MLT1A0	MaLR	chr10MLT1A091155325	ProperStrand	1	chr10	91155238	91155338	SINE	ID4_	ID	chr10ID4_91155245	ProperStrand	1	1	-inf
chr17	35236913	35236944	protein_coding-noncoding	Abhd16a	utr5	ENSMUSG00000007036	NonProperStrand	1	chr17	35236323	35236387	protein_coding	Abhd16a	intron	ENSMUSG00000007036	NonProperStrand	11	1	-inf
chr17	39847227	39847275	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	74364611	74364649	LTR	MERVL_2A-int	ERVL	chr4MERVL_2A-int74364486	NonProperStrand	2	1	-6.5615
chr16	45841283	45841319	protein_coding	Phldb2	intron	ENSMUSG00000033149	ProperStrand	4	chr2	5379297	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.1399
chr12	108951252	108951342	DNA	Tigger7	MER2_type	chr12Tigger7108951124	NonProperStrand	3	chr12	108951360	108951460	DNA	Tigger7	MER2_type	chr12Tigger7108951383	NonProperStrand	3	3	-inf
chr7	84775868	84775884	LINE	Lx2	L1	chr7Lx284775140	ProperStrand	1	chr17	39846747	39846861	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	55246573	55246664	SINE	B2_Mm2	B2	chr13B2_Mm255246503	ProperStrand	6	chr13	55246689	55246789	SINE	B2_Mm2	B2	chr13B2_Mm255246677	ProperStrand	2	2	-inf
chr10	41271527	41271595	protein_coding	Ccdc162	intron	ENSMUSG00000075225	ProperStrand	32	chr7	28945597	28945689	protein_coding	9530053A07Rik	intron	ENSMUSG00000078776	NonProperStrand	96	1	-12.3478
chr11	23894837	23894854	LTR	MTEa	MaLR	chr11MTEa23894837	ProperStrand	1	chr15	43265603	43266138	protein_coding	Gm10373	intron	ENSMUSG00000072592	ProperStrand	16	1	-inf
chr3	27337785	27337875	protein_coding	Fndc3b	intron	ENSMUSG00000039286	NonProperStrand	14	chr8	95726621	95726721	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-15.1581
chr15	86481919	86482037	LINE	Lx8	L1	chr15Lx886481719	NonProperStrand	16	chr9	31053441	31053462	SINE	B1_Mur2	Alu	chr9B1_Mur231053411	NonProperStrand	1	1	-inf
chr2	150294579	150294670	LINE	Lx2B	L1	chr2Lx2B150294264	NonProperStrand	3	chr4	132312090	132312110	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-16.0699
chr2	102054639	102054750	LTR	MTE2b	MaLR	chr2MTE2b102054581	NonProperStrand	5	chr16	36751881	36751897	protein_coding	Slc15a2	exon	ENSMUSG00000022899	NonProperStrand	15	1	-20.1811
chr8	43163033	43163066	LINE	L1Md_A	L1	chr8L1Md_A43160390	ProperStrand	25	chr6	31197639	31197665	lincRNA	2210408F21Rik	intron	ENSMUSG00000087380	NonProperStrand	67	1	-13.5740
chr13	111862887	111862987	LTR	IAPEz-int	ERVK	chr13IAPEz-int111859698	NonProperStrand	1	chr13	111863033	111863123	LTR	IAPLTR1_Mm	ERVK	chr13IAPLTR1_Mm111862969	NonProperStrand	1	1	-inf
chr3	30930710	30930810	protein_coding-noncoding	Prkci	utr5	ENSMUSG00000037643	NonProperStrand	3	chr3	30930825	30930915	protein_coding	Prkci	intron	ENSMUSG00000037643	NonProperStrand	25	3	-inf
chr5	146835683	146835930	LINE	L1_Mur2	L1	chr5L1_Mur2146835560	ProperStrand	46	chr5	114779084	114779147	protein_coding	Myo1h	intron	ENSMUSG00000066952	ProperStrand	46	1	-13.0956
chr1	60429333	60429433	protein_coding	Cyp20a1	intron	ENSMUSG00000049439	ProperStrand	15	chr15	81914987	81915004	protein_coding	Mei1	intron	ENSMUSG00000068117	ProperStrand	63	1	-14.7484
chr17	39848200	39848359	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	12	3	-10.7744
chrX	36455106	36455206	LINE	L1_Mus2	L1	chrXL1_Mus236454933	NonProperStrand	1	chrX	36454793	36454883	LTR	RLTR46	ERVK	chrXRLTR4636454630	NonProperStrand	1	1	-inf
chr19	30151579	30158551	protein_coding	Uhrf2	intron	ENSMUSG00000024817	NonProperStrand	92	chr2	5379241	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.7414
chr11	74699427	74699506	protein_coding	Sgsm2	intron	ENSMUSG00000038351	ProperStrand	17	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.5018
chr17	39847073	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	44869571	44995901	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	162	-19.0256
chr17	45695554	45698096	protein_coding	Nfkbie	intron	ENSMUSG00000023947	ProperStrand	7	chr9	110281288	110281341	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-11.9777
chr6	3201470	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	97591920	97592010	protein_coding	Crebzf	exon	ENSMUSG00000051451	ProperStrand	8	1	-6.8272
chr17	35498827	35498882	LINE	L1Md_F2	L1	chr17L1Md_F235497164	ProperStrand	1	chr2	122346926	122347008	protein_coding	Gm14085	intron	ENSMUSG00000079071	NonProperStrand	13	1	-inf
chr9	31760492	31760582	LINE	L1_Mur3	L1	chr9L1_Mur331760165	ProperStrand	1	chr9	31760798	31760898	LINE	Lx7	L1	chr9Lx731760671	ProperStrand	1	1	-inf
chr1	120113324	120113430	LINE	L1Md_Gf	L1	chr1L1Md_Gf120112572	NonProperStrand	1	chr17	39846489	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	14775257	14775330	antisense	Gm11100	.	ENSMUSG00000079357	ProperStrand	10	chr9	123461822	123461874	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-7.4520
chr8	80832279	80832369	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr13	32036854	32036954	protein_coding	Gmds	intron	ENSMUSG00000038372	ProperStrand	50	1	-7.6498
chr15	75757545	75757633	protein_coding	Tsta3	intron	ENSMUSG00000022570	ProperStrand	3	chr11	69911502	69911520	protein_coding	Asgr2	intron	ENSMUSG00000040963	ProperStrand	43	1	-19.2039
chr2	30393131	30393196	lincRNA	Gm14487	intron	ENSMUSG00000085275	ProperStrand	2	chr9	110281274	110281351	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-15.0096
chr17	39845850	39845953	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr5	137799728	137799776	protein_coding	Ephb4	intron	ENSMUSG00000029710	ProperStrand	14	1	-4.6359
chr8	22493174	22493274	LINE	L1Md_T	L1	chr8L1Md_T22493182	NonProperStrand	6	chr8	22492814	22492904	LINE	L1VL1	L1	chr8L1VL122490074	NonProperStrand	11	1	-inf
chr19	8724002	8724027	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr17	27620678	27620777	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	2	-16.0226
chr14	20683457	20683896	LTR	ORR1B1-int	MaLR	chr14ORR1B1-int20683015	NonProperStrand	6	chr15	64019652	64019735	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	1	-13.4058
chr19	46802310	46802400	protein_coding	As3mt	intron	ENSMUSG00000003559	ProperStrand	85	chr10	61343085	61343655	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	7	-19.9889
chr1	82882315	82882419	protein_coding	Agfg1	intron	ENSMUSG00000026159	ProperStrand	65	chr11	76982396	76982449	protein_coding	Efcab5	intron	ENSMUSG00000050944	NonProperStrand	27	2	-inf
chr17	39843589	39843638	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	166432386	166432444	protein_coding	Prex1	intron	ENSMUSG00000039621	ProperStrand	25	1	-4.1672
chr17	39846660	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	144556287	144556317	LTR	RLTR23	ERV1	chr5RLTR23144556165	NonProperStrand	1	1	-inf
chr4	43492783	43492852	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr1	78414873	78414947	protein_coding	Farsb	intron	ENSMUSG00000026245	ProperStrand	84	1	-6.4262
chr9	35108813	35108903	SINE	RSINE1	B4	chr9RSINE135108810	NonProperStrand	13	chr2	25199993	25200093	protein_coding	Man1b1	intron	ENSMUSG00000036646	NonProperStrand	18	1	-17.6336
chr1	187655160	187655250	LTR	MTA_Mm	MaLR	chr1MTA_Mm187655119	NonProperStrand	1	chr1	187654985	187655085	LTR	RLTR23	ERV1	chr1RLTR23187654937	ProperStrand	1	1	-inf
chr8	78590953	78591001	LINE	Lx7	L1	chr8Lx778590708	ProperStrand	2	chr13	112578183	112578243	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-11.5666
chr17	39843438	39843469	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr1	180802594	180802635	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	62	2	-4.4258
chr15	31600424	31600524	LTR	MTB_Mm-int	MaLR	chr15MTB_Mm-int31599421	NonProperStrand	5	chr15	31600564	31600654	LTR	MTB_Mm	MaLR	chr15MTB_Mm31600576	NonProperStrand	2	2	-inf
chr7	25721597	25721678	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n25721498	NonProperStrand	1	chr2	5379314	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr2	110056485	110056605	antisense	Gm13936	.	ENSMUSG00000085444	ProperStrand	9	chr8	63430792	63430810	protein_coding	Clcn3	intron	ENSMUSG00000004319	NonProperStrand	7	4	-20.8997
chr17	70963685	70963782	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr13	22043385	22043413	protein_coding	Zfp184	intron	ENSMUSG00000006720	ProperStrand	13	1	-9.2955
chr11	74926505	74926633	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	chr10	89818015	89818032	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	65	1	-9.9441
chr17	39847804	39847838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	3981140	3981159	protein_coding	Lair1	intron	ENSMUSG00000055541	ProperStrand	4	1	-3.7035
chr12	109713532	109713551	protein_coding	Eml1	intron	ENSMUSG00000058070	NonProperStrand	7	chr7	49838155	49838223	protein_coding	Gm7221	intron	ENSMUSG00000092335	NonProperStrand	22	1	-18.8786
chr7	13025366	13025645	SINE	B3A	B2	chr7B3A13025370	ProperStrand	1	chr7	13025696	13025738	SINE	PB1D10	Alu	chr7PB1D1013025647	NonProperStrand	14	1	-inf
chr16	20710546	20712720	protein_coding-noncoding	Clcn2	utr3	ENSMUSG00000022843	ProperStrand	4	chr16	20711778	20712822	protein_coding	Clcn2	exon	ENSMUSG00000022843	ProperStrand	14	3	-inf
chr7	4146930	4147018	LTR	IAPEz-int	ERVK	chr7IAPEz-int4144938	NonProperStrand	67	chr4	83329322	83329372	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-10.5288
chr17	35935143	35935258	LTR	ORR1A3	MaLR	chr17ORR1A335935024	ProperStrand	2	chr9	123462045	123462077	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr12	85085173	85085249	Simple_repeat	(CATA)n	Simple_repeat	chr12(CATA)n85085083	ProperStrand	1	chr15	12184075	12184111	protein_coding	Mtmr12	intron	ENSMUSG00000039458	ProperStrand	31	1	-inf
chr2	5379265	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr14	8123535	8123596	protein_coding	Gm3739	intron	ENSMUSG00000091472	NonProperStrand	23	1	-6.4307
chr2	71805418	71805435	LTR	MLT1C	MaLR	chr2MLT1C71805047	ProperStrand	1	chr9	60844228	60844368	LTR	RMER19B	ERVK	chr9RMER19B60843738	NonProperStrand	1	1	-inf
chr9	110281292	110281320	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr2	122123776	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-4.2544
chr15	98839760	98839790	SINE	B2_Mm2	B2	chr15B2_Mm298839708	ProperStrand	3	chr15	98847383	98847423	SINE	B2_Mm2	B2	chr15B2_Mm298847378	NonProperStrand	1	1	-inf
chr4	98539829	98539900	LTR	LTR33	ERVL	chr4LTR3398539723	ProperStrand	1	chr5	116017652	116017713	protein_coding	Gcn1l1	intron	ENSMUSG00000041638	NonProperStrand	7	1	-inf
chr11	16732636	16732671	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	chr7	17002282	17002326	protein_coding	Zc3h4	exon	ENSMUSG00000059273	NonProperStrand	35	1	-15.0590
chr10	23785386	23785476	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr7	16562439	16562539	protein_coding	Gltscr1	intron	ENSMUSG00000070808	ProperStrand	25	1	-11.8260
chr5	118613638	118613687	DNA	MER58A	MER1_type	chr5MER58A118613545	NonProperStrand	1	chr5	118613259	118613318	SINE	B2_Mm2	B2	chr5B2_Mm2118613120	ProperStrand	13	1	-inf
chr17	47152164	47152269	LTR	MYSERV6-int	ERVK	chr17MYSERV6-int47151940	NonProperStrand	2	chr17	47176951	47176982	SINE	B1_Mur1	Alu	chr17B1_Mur147176941	ProperStrand	1	1	-inf
chr11	59076322	59076338	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-12.1724
chrX	18682996	18683038	LINE	Lx	L1	chrXLx18682843	ProperStrand	1	chr12	102654431	102654498	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-inf
chr15	29625776	29625866	LINE	L1Md_A	L1	chr15L1Md_A29624963	NonProperStrand	1	chr15	28843135	28843235	LINE	Lx4B	L1	chr15Lx4B28842903	NonProperStrand	1	1	-inf
chr6	3201430	3201572	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	44869568	44870021	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	26	-4.2062
chr9	123461876	123462159	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr15	83149670	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	7	-5.7448
chr4	139357579	139359266	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	chr17	17843142	17843168	protein_coding	Vmn2r90	intron	ENSMUSG00000092120	ProperStrand	2	1	-18.9797
chr7	112786243	112787541	protein_coding-noncoding	Arfip2	utr3	ENSMUSG00000030881	NonProperStrand	24	chr7	112786117	112788619	protein_coding	Arfip2	exon	ENSMUSG00000030881	NonProperStrand	24	7	-inf
chr17	12918079	12922849	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	57	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-10.9657
chr15	77251116	77251178	LTR	RLTR21	ERVK	chr15RLTR2177251098	ProperStrand	1	chr9	123462079	123462139	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	97190588	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	29916825	29916915	protein_coding	Set	intron	ENSMUSG00000054766	ProperStrand	44	1	-5.7286
chr9	106784580	106784670	protein_coding	Manf	intron	ENSMUSG00000032575	ProperStrand	23	chr9	106784402	106784502	protein_coding	Rbm15b	utr5	ENSMUSG00000074102	ProperStrand	1	1	-inf
chr8	29574063	29574082	LINE	L1Md_F3	L1	chr8L1Md_F329571563	ProperStrand	1	chr9	123461876	123461925	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	146261174	146261236	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	1	-5.7137
chr4	150242155	150244058	LINE	L2	L2	chr4L2150243950	NonProperStrand	21	chr4	86478549	86478618	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-15.0742
chr2	33238165	33238265	LTR	ORR1A4-int	MaLR	chr2ORR1A4-int33237485	NonProperStrand	4	chr2	33236709	33236799	SINE	B1_Mm	Alu	chr2B1_Mm33236645	ProperStrand	1	1	-inf
chr18	35126825	35126887	SINE	B1_Mur3	Alu	chr18B1_Mur335126781	ProperStrand	2	chr7	4810578	4811426	protein_coding	Isoc2b	intron	ENSMUSG00000052605	ProperStrand	64	1	-19.4042
chr6	135234539	135234619	LINE	L1Md_T	L1	chr6L1Md_T135231400	NonProperStrand	2	chr1	13200714	13200779	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	1	-17.2006
chr5	65561573	65561633	LINE	L1MB5	L1	chr5L1MB565561384	ProperStrand	6	chr2	120316212	120316272	protein_coding	Capn3	intron	ENSMUSG00000079110	NonProperStrand	7	1	-23.4069
chr17	39843438	39843491	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr7	49551624	49551697	protein_coding	Vmn2r61	intron	ENSMUSG00000090967	ProperStrand	19	1	-4.6992
chr12	79060060	79060139	LTR	RLTR27	ERVK	chr12RLTR2779059997	ProperStrand	1	chr9	50521851	50521878	protein_coding	Dixdc1	intron	ENSMUSG00000032064	ProperStrand	17	1	-inf
chr17	39846795	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	120352449	120352529	protein_coding-noncoding	Zfp106	utr3	ENSMUSG00000027288	ProperStrand	1	1	-inf
chr1	151903289	151903379	Low_complexity	CT-rich	Low_complexity	chr1CT-rich151903314	NonProperStrand	3	chr1	151903191	151903291	Low_complexity	T-rich	Low_complexity	chr1T-rich151903201	NonProperStrand	3	3	-inf
chr5	136560974	136560997	protein_coding-noncoding	Rasa4	utr5	ENSMUSG00000004952	NonProperStrand	1	chr5	136561005	136561105	protein_coding	Rasa4	intron	ENSMUSG00000004952	NonProperStrand	21	1	-inf
chr10	49666047	49666137	LINE	L1Md_T	L1	chr10L1Md_T49662339	NonProperStrand	1	chr10	49666304	49666404	LINE	L1VL4	L1	chr10L1VL449666328	NonProperStrand	1	1	-inf
chr1	178331118	178331154	LTR	MER21B	ERV1	chr1MER21B178330411	NonProperStrand	14	chr17	6139276	6139379	protein_coding	Tulp4	intron	ENSMUSG00000034377	ProperStrand	56	1	-15.1188
chr5	115886799	115908697	SINE	B3	B2	chr5B3115890056	NonProperStrand	1	chr5	115886721	115886799	protein_coding	Msi1	intron	ENSMUSG00000054256	ProperStrand	22	1	-inf
chr14	120946168	120946725	LINE	L1_Mus2	L1	chr14L1_Mus2120945935	NonProperStrand	12	chr14	120920113	120922222	LTR	RMER5	ERV1	chr14RMER5120921767	ProperStrand	7	2	-inf
chr17	39847152	39847253	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	17646162	17646252	SINE	B4A	B4	chr16B4A17646165	NonProperStrand	1	1	-inf
chr9	110281288	110281347	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr9	15382219	15382237	protein_coding	Ccdc67	intron	ENSMUSG00000039977	NonProperStrand	12	1	-10.8346
chr4	107573827	107573903	LTR	RMER15-int	ERVL	chr4RMER15-int107573706	NonProperStrand	1	chr4	107576827	107576897	protein_coding	Cpt2	utr3	ENSMUSG00000028607	NonProperStrand	11	1	-inf
chr5	115490328	115490356	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr6	4949981	4950096	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-6.2569
chr13	49604344	49604434	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	chr6	93716773	93716873	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-5.3036
chr5	73295850	73295931	DNA	MER5C	MER1_type	chr5MER5C73295821	ProperStrand	1	chr5	73295674	73295718	LTR	MTE2b	MaLR	chr5MTE2b73295495	ProperStrand	1	1	-inf
chr8	19600826	19600926	SINE	B1_Mur4	Alu	chr8B1_Mur419600834	ProperStrand	1	chr8	19600624	19600714	SINE	B3	B2	chr8B319600602	ProperStrand	1	1	-inf
chrX	74528621	74528721	LTR	RLTR40	ERVK	chrXRLTR4074528203	NonProperStrand	1	chr9	21145947	21146037	protein_coding	Slc44a2	intron	ENSMUSG00000057193	NonProperStrand	22	1	-inf
chr6	142497944	142498044	LTR	MTEa-int	MaLR	chr6MTEa-int142497641	ProperStrand	4	chr6	142498072	142498162	SINE	B1F	Alu	chr6B1F142498079	ProperStrand	3	3	-inf
chr14	52279879	52285749	LTR	RLTR11B	ERVK	chr14RLTR11B52285435	NonProperStrand	4	chr14	52279613	52279867	protein_coding	Gm5622	intron	ENSMUSG00000079244	ProperStrand	11	4	-inf
chr11	30193776	30193843	DNA	RMER30	MER1_type	chr11RMER3030193755	ProperStrand	1	chr11	30193435	30193497	Simple_repeat	(TTCCC)n	Simple_repeat	chr11(TTCCC)n30193301	NonProperStrand	1	1	-inf
chr1	31126309	31126409	LTR	MT2C_Mm	ERVL	chr1MT2C_Mm31126106	NonProperStrand	1	chr1	31126534	31126624	LTR	MT2C_Mm	ERVL	chr1MT2C_Mm31126434	NonProperStrand	1	1	-inf
chr3	22491050	22491140	LINE	L1VL4	L1	chr3L1VL422490889	ProperStrand	3	chr3	22490751	22490851	LINE	L1_Mus1	L1	chr3L1_Mus122485745	NonProperStrand	2	2	-inf
chrX	38151646	38151746	LINE	L1Md_F2	L1	chrXL1Md_F238151412	ProperStrand	1	chrX	38151198	38151288	LINE	Lx7	L1	chrXLx738151032	ProperStrand	1	1	-inf
chr1	37433100	37433144	protein_coding	Inpp4a	intron	ENSMUSG00000026113	ProperStrand	55	chr9	21277511	21277536	protein_coding	Dnm2	intron	ENSMUSG00000033335	NonProperStrand	56	1	-12.3370
chr8	76401419	76401509	LINE	L1Md_F	L1	chr8L1Md_F76398320	NonProperStrand	1	chr8	76401675	76401775	LINE	L1Md_F	L1	chr8L1Md_F76401543	NonProperStrand	1	1	-inf
chr6	44802377	44802467	LINE	L1_Mus3	L1	chr6L1_Mus344802184	ProperStrand	1	chr6	44802083	44802181	LTR	MTE2a	MaLR	chr6MTE2a44802034	NonProperStrand	1	1	-inf
chr6	129678267	129678357	SINE	PB1	Alu	chr6PB1129678286	ProperStrand	1	chr6	129678392	129678492	SINE	RSINE1	B4	chr6RSINE1129678413	ProperStrand	1	1	-inf
chr16	21595952	21596040	protein_coding	Vps8	intron	ENSMUSG00000033653	ProperStrand	86	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.4298
chr13	30815000	30815017	Simple_repeat	(TA)n	Simple_repeat	chr13(TA)n30814993	NonProperStrand	1	chr13	100783540	100783640	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	1	-inf
chr17	29570650	29570750	SINE	ID_B1	B4	chr17ID_B129570661	NonProperStrand	1	chr17	29568651	29570628	SINE	MIR3	MIR	chr17MIR329568577	NonProperStrand	1	1	-inf
chr17	39846404	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	6137788	6138626	protein_coding	Arl2	exon	ENSMUSG00000024944	ProperStrand	2	2	-inf
chr7	58748392	58748458	LTR	LTR41	ERVL	chr7LTR4158748229	ProperStrand	2	chr9	123461935	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr9	118674951	118675012	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.5862
chrX	74289765	74289837	LINE	Lx9	L1	chrXLx974289148	ProperStrand	3	chr17	39846759	39846818	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr1	160575247	160575324	protein_coding	Astn1	intron	ENSMUSG00000026587	NonProperStrand	77	chr14	11893525	11893578	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-7.3760
chr6	125475513	125475613	LTR	RMER10A	ERVL	chr6RMER10A125475339	ProperStrand	3	chr6	125475634	125475724	LTR	RMER10A	ERVL	chr6RMER10A125475602	ProperStrand	2	2	-inf
chr17	39848598	39848736	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	2	-3.3078
chr15	55986986	55987076	LINE	L1VL4	L1	chr15L1VL455986514	ProperStrand	1	chr15	56595390	56595490	processed_transcript	Has2as	.	ENSMUSG00000086541	NonProperStrand	5	1	-inf
chr17	39847727	39847778	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	116408074	116408182	protein_coding	Ube2o	intron	ENSMUSG00000020802	ProperStrand	3	1	-4.3512
chr6	108787272	108787355	protein_coding	Edem1	intron	ENSMUSG00000030104	ProperStrand	32	chr17	27125945	27133780	protein_coding	Ggnbp1	intron	ENSMUSG00000048731	NonProperStrand	19	1	-15.6130
chr1	113904001	113904025	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	16	chr13	112578195	112578277	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-6.8081
chr14	99078366	99079139	LTR	MLT2B4	ERVL	chr14MLT2B499078326	ProperStrand	3	chr5	108073317	108073428	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	3	-inf
chr9	17987799	17987829	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr5	25284354	25284461	protein_coding	Actr3b	intron	ENSMUSG00000056367	NonProperStrand	66	1	-10.9496
chr7	101952151	101952202	LINE	L1_Mus3	L1	chr7L1_Mus3101951859	ProperStrand	8	chr17	39843417	39843504	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-6.4530
chr8	86857465	86857555	LINE	Lx9	L1	chr8Lx986857334	NonProperStrand	1	chr8	86855644	86855744	LTR	ORR1D1	MaLR	chr8ORR1D186855438	NonProperStrand	1	1	-inf
chrX	4899367	4899407	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr9	123461883	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-8.3666
chr4	137782684	137782747	protein_coding-noncoding	Hp1bp3	utr5	ENSMUSG00000028759	NonProperStrand	9	chr2	75676190	75676239	protein_coding	Agps	intron	ENSMUSG00000042410	NonProperStrand	122	1	-14.4870
chr17	12753617	12753715	LINE	L1M5	L1	chr17L1M512753642	NonProperStrand	1	chr17	39847360	39847418	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	58127988	58128035	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	chr17	33823070	33823211	protein_coding	Hnrnpm	utr5	ENSMUSG00000059208	ProperStrand	59	1	-9.5163
chr2	37391783	37391873	protein_coding	Strbp	intron	ENSMUSG00000026915	ProperStrand	35	chr3	40702792	40702891	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	2	-inf
chr9	8001415	8001515	protein_coding-noncoding	Yap1	utr3	ENSMUSG00000053110	ProperStrand	9	chr9	8001512	8001602	protein_coding	Yap1	exon	ENSMUSG00000053110	ProperStrand	74	2	-22.8143
chr2	32620332	32620445	protein_coding-noncoding	Ttc16	utr3	ENSMUSG00000039021	NonProperStrand	13	chr2	32620440	32620589	protein_coding	Ttc16	intron	ENSMUSG00000039021	NonProperStrand	16	12	-inf
chr10	81177161	81177251	LTR	ORR1A2-int	MaLR	chr10ORR1A2-int81175342	NonProperStrand	4	chr10	81177266	81177366	LTR	ORR1A2	MaLR	chr10ORR1A281177287	NonProperStrand	6	3	-inf
chrX	42072893	42072990	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int42072713	NonProperStrand	2	chr9	123461965	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr10	75761427	75761448	protein_coding	Dip2a	exon	ENSMUSG00000020231	ProperStrand	98	chr15	37968089	37968193	protein_coding	Ubr5	intron	ENSMUSG00000037487	ProperStrand	87	1	-10.2897
chr3	155622624	155622714	SINE	B3	B2	chr3B3155622587	ProperStrand	1	chr3	155622825	155622925	SINE	B4A	B4	chr3B4A155622762	ProperStrand	1	1	-inf
chr2	93343196	93343296	DNA	MER44B	MER2_type	chr2MER44B93343124	NonProperStrand	1	chr2	93343387	93343477	LTR	ORR1E	MaLR	chr2ORR1E93343357	ProperStrand	1	1	-inf
chr9	123462079	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	120699756	120699824	protein_coding	Ubr1	intron	ENSMUSG00000027272	NonProperStrand	8	1	-4.8360
chr1	113955652	113955713	LINE	Lx3_Mus	L1	chr1Lx3_Mus113955216	NonProperStrand	1	chr14	11913957	11914043	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-inf
chr10	23785343	23785430	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr11	109011644	109011702	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	1	-4.2033
chr9	42920275	42920343	protein_coding	Tmem136	intron	ENSMUSG00000048503	ProperStrand	5	chr9	42875953	42876011	protein_coding	Arhgef12	intron	ENSMUSG00000059495	ProperStrand	101	1	-16.1507
chr17	39846004	39846066	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr1	75215649	75215744	protein_coding	Tuba4a	intron	ENSMUSG00000026202	ProperStrand	7	1	-6.0522
chr17	39847173	39847383	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	74272482	74272572	SINE	B3	B2	chrXB374272477	ProperStrand	15	2	-4.0614
chr4	43492952	43493059	SINE	B3	B2	chr4B343492960	NonProperStrand	660	chr4	59901611	59901635	protein_coding	Snx30	intron	ENSMUSG00000028385	NonProperStrand	4	1	-12.8983
chr4	32678329	32678429	SINE	B4A	B4	chr4B4A32678179	ProperStrand	4	chr4	32676799	32678333	SINE	RSINE1	B4	chr4RSINE132676713	ProperStrand	4	4	-inf
chr1	118639048	118639084	LINE	L1_Mur1	L1	chr1L1_Mur1118638449	ProperStrand	2	chr8	117386267	117386356	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-13.5579
chr2	71556634	71556726	LTR	RLTR15	ERVK	chr2RLTR1571556465	ProperStrand	1	chr2	71556314	71556414	SINE	B1_Mm	Alu	chr2B1_Mm71556290	ProperStrand	1	1	-inf
chr11	52117343	52117433	SINE	B1_Mus1	Alu	chr11B1_Mus152117271	NonProperStrand	1	chr11	52117461	52117561	SINE	B3A	B2	chr11B3A52117465	NonProperStrand	1	1	-inf
chr12	34519546	34519646	LTR	MTE2b	MaLR	chr12MTE2b34519264	ProperStrand	1	chr12	34519818	34519908	SINE	B4	B4	chr12B434519768	NonProperStrand	1	1	-inf
chr17	39846353	39846472	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	24580073	24580089	LTR	ORR1C1	MaLR	chr18ORR1C124579904	ProperStrand	2	1	-5.3533
chr16	94012994	94013035	LINE	L1_Mus3	L1	chr16L1_Mus394012587	NonProperStrand	1	chr5	110325169	110325257	LINE	L1_Mur3	L1	chr5L1_Mur3110325144	NonProperStrand	4	1	-inf
chr10	96612368	96612386	Low_complexity	GA-rich	Low_complexity	chr10GA-rich96612368	NonProperStrand	2	chr9	15314852	15314984	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-17.8488
chr17	4082153	4082236	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr12	99281610	99281636	LTR	MTC-int	MaLR	chr12MTC-int99281368	ProperStrand	3	1	-14.0225
chr5	34834277	34834302	LINE	L1_Mur3	L1	chr5L1_Mur334833654	NonProperStrand	3	chr5	34820235	34821774	protein_coding	Fam193a	intron	ENSMUSG00000037210	ProperStrand	38	2	-22.0998
chr11	70728309	70728400	protein_coding	Rabep1	intron	ENSMUSG00000020817	ProperStrand	26	chr2	5379302	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.1854
chr13	99469052	99469142	SINE	ID4	ID	chr13ID499469055	ProperStrand	1	chr13	44869573	44869673	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	39847181	39847245	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	31496384	31496456	protein_coding	Snx17	intron	ENSMUSG00000029146	ProperStrand	4	1	-4.8204
chr9	97075833	97075914	LINE	L1MB7	L1	chr9L1MB797075521	NonProperStrand	2	chr9	97079098	97079120	LTR	RMER12	ERVK	chr9RMER1297078997	ProperStrand	9	1	-inf
chr9	106485307	106485397	LTR	RMER15	ERVL	chr9RMER15106485164	ProperStrand	2	chr9	106483764	106483864	LTR	RMER21B	ERV1	chr9RMER21B106483621	NonProperStrand	2	2	-inf
chr3	144827352	144827378	LINE	L1MEg1	L1	chr3L1MEg1144827162	ProperStrand	2	chr3	144826164	144826200	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n144826043	NonProperStrand	1	1	-inf
chr11	30800509	30800535	LINE	Lx5	L1	chr11Lx530800434	NonProperStrand	2	chr17	39847216	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr7	47188520	47188562	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr13	57820291	57820335	protein_coding	Spock1	intron	ENSMUSG00000056222	ProperStrand	34	1	-12.7482
chr17	4082172	4082238	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr7	64302156	64302233	protein_coding	Gabrg3	intron	ENSMUSG00000055026	NonProperStrand	33	1	-8.8614
chr2	91018250	91018287	protein_coding	Madd	exon	ENSMUSG00000040687	NonProperStrand	97	chr7	6952922	6953030	protein_coding	Aurkc	intron	ENSMUSG00000070837	ProperStrand	1	1	-inf
chr7	18950609	18957575	LINE	MusHAL1	L1	chr7MusHAL118953209	ProperStrand	1	chr17	39847636	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	116009365	116023912	protein_coding-noncoding	Fbf1	utr3	ENSMUSG00000020776	ProperStrand	13	chr11	116009582	116023736	protein_coding	Fbf1	intron	ENSMUSG00000020776	ProperStrand	74	10	-inf
chr11	3314249	3314349	LTR	ORR1D1	MaLR	chr11ORR1D13314172	ProperStrand	3	chr11	3314100	3314190	SINE	B3	B2	chr11B33314076	ProperStrand	3	3	-inf
chr17	39843340	39843481	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr6	86421756	86421774	lincRNA	A430078I02Rik	exon	ENSMUSG00000085589	ProperStrand	1	1	-inf
chr15	96193722	96193748	protein_coding	Arid2	intron	ENSMUSG00000033237	NonProperStrand	12	chr9	64435977	64436112	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-14.0544
chr17	12739326	12739342	LTR	RMER19B	ERVK	chr17RMER19B12738879	NonProperStrand	2	chr6	87931351	87931458	protein_coding	Gm5577	intron	ENSMUSG00000084950	ProperStrand	24	1	-20.2563
chr6	3201298	3201565	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	97190541	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	21	-4.9194
chr17	39847611	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	65306743	65306843	LTR	MMETn-int	ERVK	chr5MMETn-int65306360	ProperStrand	4	1	-3.7035
chr1	185367551	185369602	LTR	MERVL-int	ERVL	chr1MERVL-int185363731	ProperStrand	2	chr17	39843604	39843706	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr17	39846813	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	52869864	52869987	LTR	ORR1B1	MaLR	chr5ORR1B152869639	ProperStrand	1	1	-inf
chr1	84802533	84802663	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr9	110281286	110281309	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-6.1256
chr13	27206529	27206629	LINE	Lx2	L1	chr13Lx227206179	ProperStrand	1	chr13	27206706	27206796	LINE	Lx2	L1	chr13Lx227206636	NonProperStrand	1	1	-inf
chr19	49685741	49685769	LINE	L1Md_F2	L1	chr19L1Md_F249685627	NonProperStrand	3	chr15	98931582	98931673	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	1	-19.2039
chr17	39845440	39845531	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	75776741	75776800	LTR	MLT1B	MaLR	chr7MLT1B75776511	NonProperStrand	1	1	-inf
chr4	154255495	154255548	protein_coding	Mmel1	intron	ENSMUSG00000058183	ProperStrand	22	chr2	30973788	30973960	protein_coding	Fnbp1	intron	ENSMUSG00000075415	ProperStrand	27	1	-15.6852
chr19	7021683	7021773	protein_coding	Bad	intron	ENSMUSG00000024959	NonProperStrand	24	chr18	9995750	9995850	protein_coding	Usp14	utr3	ENSMUSG00000047879	ProperStrand	29	1	-15.3563
chr2	172325385	172325475	LTR	RMER17C	ERVK	chr2RMER17C172325387	ProperStrand	1	chr2	172325215	172325315	SINE	B1_Mm	Alu	chr2B1_Mm172325242	NonProperStrand	1	1	-inf
chr5	122009912	122009973	LTR	MTC-int	MaLR	chr5MTC-int122009861	ProperStrand	1	chr5	122010200	122010285	SINE	B3	B2	chr5B3122010168	NonProperStrand	1	1	-inf
chr9	123462056	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	136883809	136883870	protein_coding	2210009G21Rik	intron	ENSMUSG00000027281	NonProperStrand	12	1	-4.0248
chr18	68289350	68289412	protein_coding	D18Ertd653e	intron	ENSMUSG00000024544	NonProperStrand	35	chr2	91939985	91940319	protein_coding	Phf21a	intron	ENSMUSG00000058318	NonProperStrand	121	3	-inf
chr16	13709326	13709392	LTR	MERVL_2A-int	ERVL	chr16MERVL_2A-int13708793	NonProperStrand	5	chr12	5021385	5021471	protein_coding	Atad2b	intron	ENSMUSG00000052812	ProperStrand	35	1	-18.2660
chr12	111669658	111669864	DNA	MER115	Tip100	chr12MER115111669665	ProperStrand	8	chr17	39848099	39848124	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.1688
chr9	59779636	59779652	LINE	L1M2	L1	chr9L1M259778797	ProperStrand	1	chr17	39847028	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847526	39847806	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	37187341	37187359	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	4	-4.1054
chr12	32825599	32825674	SINE	B3	B2	chr12B332825543	ProperStrand	1	chr19	23909128	23909187	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	1	-inf
chr18	35495973	35496047	protein_coding	Sil1	intron	ENSMUSG00000024357	ProperStrand	39	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.9665
chr10	93869619	93963900	protein_coding	Tmcc3	intron	ENSMUSG00000020023	NonProperStrand	36	chr9	123462102	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.7021
chr11	60223108	60223215	protein_coding	Atpaf2	intron	ENSMUSG00000042709	NonProperStrand	2	chrX	99218918	99218937	protein_coding	Nhsl2	intron	ENSMUSG00000079481	ProperStrand	20	1	-20.4416
chr13	75770537	75770607	LINE	L1Md_F	L1	chr13L1Md_F75768877	ProperStrand	1	chr12	111574719	111574779	LTR	MTB	MaLR	chr12MTB111574721	ProperStrand	3	1	-inf
chr5	48120378	48120498	LINE	Lx4B	L1	chr5Lx4B48118588	ProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr18	70991670	70991760	LTR	MLT1B	MaLR	chr18MLT1B70991696	ProperStrand	1	chr18	70991405	70991505	LTR	RLTR11A	ERVK	chr18RLTR11A70991163	ProperStrand	1	1	-inf
chr16	13789564	13791927	protein_coding	Rrn3	intron	ENSMUSG00000022682	ProperStrand	46	chr1	181960086	181960177	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-8.5658
chr10	128085307	128085361	lincRNA	Gm17336	exon	ENSMUSG00000091431	ProperStrand	114	chr4	117154516	117154585	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-7.9610
chr17	39843402	39843495	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr16	87483491	87483523	protein_coding	Usp16	utr3	ENSMUSG00000025616	NonProperStrand	4	1	-7.9732
chr3	69841258	69841348	LINE	L1_Mus1	L1	chr3L1_Mus169841166	NonProperStrand	1	chr3	69841056	69841156	LINE	L2a	L2	chr3L2a69840861	ProperStrand	1	1	-inf
chr14	45379287	45379349	LINE	L1Md_F2	L1	chr14L1Md_F245378635	ProperStrand	3	chr14	45375035	45375087	LINE	L1_Mur3	L1	chr14L1_Mur345374369	NonProperStrand	2	2	-inf
chr17	39847952	39847982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	8464027	8464134	LTR	MERVL_2A-int	ERVL	chr5MERVL_2A-int8463604	ProperStrand	1	1	-inf
chr17	39847036	39847126	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	31889871	31889971	SINE	PB1D10	Alu	chr5PB1D1031889877	ProperStrand	1	1	-inf
chr6	66540018	66540077	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int66536019	ProperStrand	2	chr7	133104749	133104836	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-12.5887
chr4	150574757	150574844	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr10	40294739	40294766	protein_coding	Slc22a16	intron	ENSMUSG00000019834	NonProperStrand	68	1	-7.9719
chr2	29931558	29931658	SINE	B1_Mus1	Alu	chr2B1_Mus129931571	ProperStrand	6	chr2	29931472	29931562	SINE	B3	B2	chr2B329931483	ProperStrand	6	6	-inf
chr16	17520589	17520972	protein_coding	Lztr1	intron	ENSMUSG00000022761	ProperStrand	12	chr18	46734381	46734399	protein_coding	Tmed7	intron	ENSMUSG00000033184	ProperStrand	4	1	-inf
chr7	4176249	4176349	LINE	L1Md_F2	L1	chr7L1Md_F24175731	NonProperStrand	1	chr7	4176516	4176606	LINE	Lx2B	L1	chr7Lx2B4176343	NonProperStrand	1	1	-inf
chr10	42258247	42258369	SINE	B1_Mur4	Alu	chr10B1_Mur442258249	ProperStrand	1	chr10	42254194	42254223	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	1	-inf
chr1	184225270	184225291	LTR	ORR1A2	MaLR	chr1ORR1A2184225086	ProperStrand	1	chr13	97190562	97190632	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	30858762	30858883	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	chr5	103575131	103578879	protein_coding	Mapk10	intron	ENSMUSG00000046709	NonProperStrand	49	1	-11.5282
chr17	39847837	39847937	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	145065999	145066089	protein_coding	Lrmp	intron	ENSMUSG00000030263	NonProperStrand	6	2	-5.2646
chr7	47188330	47188420	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	chr2	55397325	55397425	protein_coding	Kcnj3	intron	ENSMUSG00000026824	NonProperStrand	2	1	-21.2761
chr6	145788176	145788266	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n145788082	ProperStrand	1	chr6	145788280	145788380	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n145788278	ProperStrand	1	1	-inf
chr11	3230058	3230084	lincRNA	Gm12592	intron	ENSMUSG00000053263	NonProperStrand	3	chr9	123461931	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr8	99361426	99361526	LINE	Lx4A	L1	chr8Lx4A99361314	ProperStrand	2	chr8	99361717	99361807	LTR	MLT1D	MaLR	chr8MLT1D99361570	ProperStrand	2	2	-inf
chrX	108086850	108086950	LINE	Lx2	L1	chrXLx2108084910	NonProperStrand	2	chrX	108087114	108087204	LINE	Lx4A	L1	chrXLx4A108087107	NonProperStrand	1	1	-inf
chr13	31636470	31636541	LINE	L1Md_T	L1	chr13L1Md_T31636328	NonProperStrand	1	chr2	112313639	112313720	LINE	L1_Mus1	L1	chr2L1_Mus1112313426	ProperStrand	2	1	-inf
chr2	86740476	86740566	LTR	ORR1B1-int	MaLR	chr2ORR1B1-int86740361	ProperStrand	2	chr2	86740246	86740346	LTR	ORR1B1	MaLR	chr2ORR1B186740011	ProperStrand	1	1	-inf
chr4	130723617	130723707	LTR	MTE2b	MaLR	chr4MTE2b130723533	NonProperStrand	1	chr4	130723778	130723878	LTR	ORR1B1	MaLR	chr4ORR1B1130723718	NonProperStrand	2	1	-inf
chr17	39846645	39846741	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	91861381	91861402	antisense	4833422C13Rik	.	ENSMUSG00000074782	ProperStrand	3	1	-4.3017
chr17	39847767	39847857	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	15513603	15514311	lincRNA	A930024N18Rik	exon	ENSMUSG00000085544	ProperStrand	3	1	-4.3512
chr2	164761491	164761591	DNA	URR1A	MER1_type	chr2URR1A164761375	NonProperStrand	4	chr2	164761598	164761688	LTR	MLT1H1	MaLR	chr2MLT1H1164761577	NonProperStrand	4	4	-inf
chr17	39847252	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	67229721	67229751	protein_coding	Serbp1	intron	ENSMUSG00000036371	NonProperStrand	9	1	-3.1539
chr11	69652271	69652657	protein_coding-noncoding	1810027O10Rik	utr5	ENSMUSG00000070394	ProperStrand	1	chr1	167268330	167268430	protein_coding	Dcaf6	exon	ENSMUSG00000026571	ProperStrand	336	1	-inf
chr3	63760651	63760741	protein_coding	Slc33a1	intron	ENSMUSG00000027822	NonProperStrand	2	chr10	116240767	116240867	protein_coding	Gm239	intron	ENSMUSG00000034057	NonProperStrand	2	1	-19.8939
chr6	124741224	124741279	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr2	151565600	151565702	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	58	1	-15.3814
chr15	58936319	58936448	LTR	MTD	MaLR	chr15MTD58936282	NonProperStrand	2	chr15	55637952	55637969	protein_coding	Sntb1	intron	ENSMUSG00000060429	ProperStrand	29	1	-19.5186
chr3	97158949	97159049	LINE	Lx7	L1	chr3Lx797158074	ProperStrand	1	chr3	97159087	97159177	LINE	Lx7	L1	chr3Lx797159076	ProperStrand	1	1	-inf
chr15	12851851	12859447	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	chr6	115807978	115808068	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-10.5604
chr13	44869628	44869659	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	62446522	62446543	protein_coding	BC046404	intron	ENSMUSG00000046417	ProperStrand	20	1	-6.6542
chr1	63446248	63446374	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int63445242	NonProperStrand	11	chr1	63515636	63528777	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-11.5180
chr10	17807234	17807307	protein_coding	Reps1	intron	ENSMUSG00000019854	ProperStrand	14	chr8	84256316	84256379	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-13.0422
chr13	97247504	97247520	LTR	MER77	ERVL	chr13MER7797247240	NonProperStrand	2	chr17	39847994	39848032	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39846620	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	78951940	79017897	protein_coding	Vit	intron	ENSMUSG00000024076	NonProperStrand	35	5	-3.4858
chr17	4082556	4082614	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr13	55212673	55212721	protein_coding	Zfp346	intron	ENSMUSG00000021481	ProperStrand	35	1	-11.9487
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr17	23818851	23818869	protein_coding	Cldn6	utr3	ENSMUSG00000023906	NonProperStrand	1	1	-inf
chr8	45411572	45411672	LINE	Lx2	L1	chr8Lx245410535	ProperStrand	1	chr8	45411828	45411918	LTR	ORR1E	MaLR	chr8ORR1E45411781	NonProperStrand	1	1	-inf
chr15	69349929	69350019	LTR	MLT1A0	MaLR	chr15MLT1A069349852	NonProperStrand	1	chr15	69349513	69349613	Simple_repeat	(CATA)n	Simple_repeat	chr15(CATA)n69349520	NonProperStrand	1	1	-inf
chr1	21021735	21021835	protein_coding	Tram2	intron	ENSMUSG00000041779	ProperStrand	58	chr12	80800235	80800325	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-9.9093
chr17	39848141	39848175	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	34882596	34882697	LTR	RLTR13A2	ERVK	chr4RLTR13A234882496	ProperStrand	1	1	-inf
chr17	56057850	56059003	LTR	MYSERV16_I-int	ERVK	chr17MYSERV16_I-int56057280	ProperStrand	9	chr17	56059007	56059299	SINE	B2_Mm2	B2	chr17B2_Mm256058930	ProperStrand	1	1	-inf
chr6	29564830	29564859	LTR	RLTR1C	ERV1	chr6RLTR1C29564664	NonProperStrand	1	chr6	29560986	29561076	SINE	B3	B2	chr6B329561011	ProperStrand	1	1	-inf
chr11	61208886	61208902	LTR	IAP-d-int	ERVK	chr11IAP-d-int61205941	ProperStrand	1	chr17	39847188	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	104432810	104432900	LINE	Lx8	L1	chr4Lx8104432773	ProperStrand	1	chr4	104432937	104433037	LTR	MTC	MaLR	chr4MTC104432910	NonProperStrand	1	1	-inf
chr14	37132513	37132628	LINE	L1MC3	L1	chr14L1MC337132041	ProperStrand	1	chr17	39847381	39847406	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	109011656	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	35667211	35667300	protein_coding	Cchcr1	intron	ENSMUSG00000040312	NonProperStrand	23	1	-8.0167
chr15	62125824	62125956	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr4	46926506	46926528	protein_coding	Gabbr2	intron	ENSMUSG00000039809	ProperStrand	4	1	-11.8666
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr15	79153568	79153612	protein_coding	Pla2g6	intron	ENSMUSG00000042632	NonProperStrand	42	1	-12.5507
chr13	85227100	85227123	LINE	Lx2B	L1	chr13Lx2B85226956	NonProperStrand	1	chr1	78446430	78446508	protein_coding	Farsb	intron	ENSMUSG00000026245	ProperStrand	84	1	-inf
chr13	99300346	99300446	LTR	RMER6C	ERVK	chr13RMER6C99300055	ProperStrand	1	chr3	153021730	153021820	protein_coding	St6galnac3	intron	ENSMUSG00000052544	NonProperStrand	18	1	-inf
chr11	69758146	69758198	protein_coding	Slc2a4	intron	ENSMUSG00000018566	ProperStrand	7	chr2	164835717	164836488	protein_coding	Ncoa5	intron	ENSMUSG00000039804	NonProperStrand	18	1	-18.9495
chr1	191073384	191073412	protein_coding	Kcnk2	intron	ENSMUSG00000037624	NonProperStrand	64	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-7.1120
chr7	79461732	79461822	LINE	L1MEc	L1	chr7L1MEc79461536	ProperStrand	2	chr7	79460615	79461732	LTR	RLTR18	ERVK	chr7RLTR1879460273	NonProperStrand	5	2	-inf
chr12	78350926	78350998	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr7	141068732	141070412	protein_coding	Fank1	intron	ENSMUSG00000053111	ProperStrand	73	1	-5.5118
chr17	39846289	39846379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr17	39846141	39846241	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	NonProperStrand	5	2	-inf
chr15	36598961	36599024	DNA	URR1B	MER1_type	chr15URR1B36598895	ProperStrand	3	chr7	68090798	68090851	LINE	Lx9	L1	chr7Lx968090383	ProperStrand	9	1	-21.6921
chr4	86854732	86854749	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	chr16	19883802	19883924	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-6.9356
chr15	97217495	97217585	Unknown	MamRep605	Unknown	chr15MamRep60597217499	ProperStrand	1	chr7	29295388	29295488	protein_coding	Il28a	utr5	ENSMUSG00000059128	NonProperStrand	1	1	-inf
chr17	39847552	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	17888625	17891761	protein_coding	Cdk13	intron	ENSMUSG00000041297	ProperStrand	10	2	-3.6759
chr2	33123818	33123910	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	chr1	11090678	11090747	protein_coding	Prex2	intron	ENSMUSG00000048960	ProperStrand	26	1	-9.9032
chr8	105172818	105172864	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	chr6	29868009	29868046	protein_coding	Fam40b	intron	ENSMUSG00000039629	ProperStrand	8	1	-14.2095
chr8	127488787	127488874	LINE	L1M3	L1	chr8L1M3127488743	ProperStrand	1	chr9	123462038	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	126826822	126826879	Other	RMER1A	Other	chr2RMER1A126825734	ProperStrand	1	chr16	23111684	23111757	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	7	1	-inf
chr8	44957088	44957155	LINE	L1Md_F2	L1	chr8L1Md_F244954969	NonProperStrand	11	chr6	72711678	72711758	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	1	-12.4069
chr17	39847575	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	24703660	24703796	SINE	ID_B1	B4	chr12ID_B124703645	NonProperStrand	1	1	-inf
chr2	39145877	39145993	LINE	L1_Mm	L1	chr2L1_Mm39144227	ProperStrand	2	chr9	123461827	123461856	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr6	28639835	28639910	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr13	44905228	44905304	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	2	-5.8977
chr11	78843655	78843717	antisense	Gm11201	.	ENSMUSG00000085941	ProperStrand	14	chr11	78844939	78845010	protein_coding	Ksr1	intron	ENSMUSG00000018334	NonProperStrand	12	1	-18.1131
chr14	7025945	7025977	LINE	Lx8	L1	chr14Lx87025736	ProperStrand	2	chr14	7487231	7487262	protein_coding	Gm10251	intron	ENSMUSG00000068777	ProperStrand	2	1	-19.8939
chr4	16480890	16480980	DNA	MER5A	MER1_type	chr4MER5A16480900	NonProperStrand	1	chr4	16480725	16480825	LTR	MER89	ERV1	chr4MER8916480519	NonProperStrand	1	1	-inf
chr18	80211932	80211983	LTR	MT2C_Mm	ERVL	chr18MT2C_Mm80211903	NonProperStrand	10	chr18	80212315	80212401	LTR	MT2C_Mm	ERVL	chr18MT2C_Mm80212293	NonProperStrand	15	1	-18.4263
chr10	66914129	66914181	LINE	L1Md_F2	L1	chr10L1Md_F266912986	NonProperStrand	1	chr2	26919332	26919744	protein_coding	Tmem8c	intron	ENSMUSG00000009214	NonProperStrand	8	1	-inf
chr4	132404638	132404738	LTR	ORR1A2-int	MaLR	chr4ORR1A2-int132403000	NonProperStrand	2	chr4	132404750	132404840	LTR	ORR1A2	MaLR	chr4ORR1A2132404764	NonProperStrand	1	1	-inf
chr10	23785753	23785821	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr10	128085130	128085169	lincRNA	Gm17336	exon	ENSMUSG00000091431	ProperStrand	114	1	-8.7682
chr11	115286145	115286162	protein_coding	Kctd2	intron	ENSMUSG00000016940	NonProperStrand	11	chr5	17776748	17776786	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-13.5716
chr2	13331635	13331651	protein_coding	Cubn	intron	ENSMUSG00000026726	NonProperStrand	6	chr13	44869598	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.1685
chr7	116267197	116267296	LTR	MERVL-int	ERVL	chr7MERVL-int116261974	ProperStrand	64	chr7	116267327	116267417	LTR	MT2_Mm	ERVL	chr7MT2_Mm116267331	ProperStrand	2	1	-19.5861
chr17	39847039	39847144	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	50565073	50565121	LTR	IAPEz-int	ERVK	chr6IAPEz-int50563355	NonProperStrand	3	1	-4.3017
chr3	89715077	89734858	protein_coding	Il6ra	intron	ENSMUSG00000027947	NonProperStrand	2	chr8	124678795	124678895	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	2	-inf
chr12	54696806	54696847	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr16	91034985	91035991	protein_coding	Gcfc1	intron	ENSMUSG00000022974	ProperStrand	18	1	-12.8239
chr17	39846419	39846507	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	46577115	46577135	SINE	RSINE1	B4	chr17RSINE146577092	NonProperStrand	1	1	-inf
chr9	123461931	123462005	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	35905290	35905307	protein_coding	2310079F23Rik	intron	ENSMUSG00000029097	NonProperStrand	8	1	-4.8360
chr10	40287929	40287994	LINE	Lx2A	L1	chr10Lx2A40287217	NonProperStrand	6	chr10	40290232	40290268	protein_coding	Slc22a16	utr5	ENSMUSG00000019834	NonProperStrand	68	1	-16.5673
chr7	111081150	111081240	LINE	L1MC1	L1	chr7L1MC1111081152	ProperStrand	2	chr7	111081042	111081142	SINE	B3A	B2	chr7B3A111080920	NonProperStrand	4	2	-inf
chr15	69033642	69033741	LINE	Lx8	L1	chr15Lx869033650	ProperStrand	2	chr17	39847847	39847882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr2	19540342	19540358	LINE	L1_Mus3	L1	chr2L1_Mus319539850	NonProperStrand	2	chr17	39846661	39846734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr15	80841960	80842001	protein_coding-noncoding	Sgsm3	utr5	ENSMUSG00000042303	ProperStrand	3	chr15	80842218	80842282	protein_coding	Sgsm3	utr3	ENSMUSG00000042303	ProperStrand	42	1	-19.2641
chr9	76493070	76502109	LINE	L1Md_T	L1	chr9L1Md_T76492308	ProperStrand	1	chr17	39846817	39846852	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	143141357	143141457	LINE	Lx8	L1	chr2Lx8143140613	NonProperStrand	1	chr2	143141637	143141727	LINE	Lx8	L1	chr2Lx8143141517	NonProperStrand	1	1	-inf
chr10	40258539	40258620	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr5	115489458	115490398	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	3	-6.9739
chr12	91525579	91525669	protein_coding	Nrxn3	intron	ENSMUSG00000066392	ProperStrand	49	chr6	63570915	63571015	protein_coding	Grid2	intron	ENSMUSG00000071424	NonProperStrand	44	1	-13.0575
chr6	128600541	128600631	LINE	Lx4B	L1	chr6Lx4B128600552	NonProperStrand	1	chr6	128600378	128600478	LTR	RMER19B	ERVK	chr6RMER19B128600335	NonProperStrand	1	1	-inf
chr14	69783953	69784044	antisense	1700092C10Rik	.	ENSMUSG00000092499	ProperStrand	10	chr9	68925841	68925941	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-13.2529
chr15	82269619	82269719	LTR	ORR1A2-int	MaLR	chr15ORR1A2-int82269572	NonProperStrand	2	chr15	82270095	82270185	LTR	ORR1A2	MaLR	chr15ORR1A282269986	NonProperStrand	2	2	-inf
chrX	19370700	19370800	LTR	MERVL_2A-int	ERVL	chrXMERVL_2A-int19370703	ProperStrand	1	chrX	19370946	19371036	LTR	MERVL_2A-int	ERVL	chrXMERVL_2A-int19370932	ProperStrand	1	1	-inf
chr17	39847271	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	156645557	156645674	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n156645266	ProperStrand	1	1	-inf
chr17	35510599	35510626	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	chr13	62277182	62277219	Simple_repeat	(GA)n	Simple_repeat	chr13(GA)n62277170	ProperStrand	1	1	-inf
chr11	5974153	5974230	DNA	MER2	MER2_type	chr11MER25974140	NonProperStrand	2	chr11	5973519	5973586	SINE	B1_Mur4	Alu	chr11B1_Mur45973463	NonProperStrand	2	2	-inf
chr12	110536046	110536124	LINE	Lx	L1	chr12Lx110535784	NonProperStrand	13	chr12	110539144	110539207	LINE	Lx	L1	chr12Lx110538434	ProperStrand	9	1	-19.1250
chr5	29753546	29753646	LINE	L1_Mur2	L1	chr5L1_Mur229753470	ProperStrand	1	chr5	29764439	29764529	protein_coding	Nom1	intron	ENSMUSG00000001569	NonProperStrand	1	1	-inf
chr10	78439904	78440004	LINE	Lx2	L1	chr10Lx278438477	NonProperStrand	5	chr10	78440057	78440147	Simple_repeat	(TATAA)n	Simple_repeat	chr10(TATAA)n78440033	NonProperStrand	1	1	-inf
chr4	17267981	17268071	LINE	Lx6	L1	chr4Lx617267748	NonProperStrand	1	chr4	17268319	17268419	LINE	Lx6	L1	chr4Lx617268248	NonProperStrand	1	1	-inf
chr17	47682221	47682246	protein_coding	Ccnd3	intron	ENSMUSG00000034165	ProperStrand	70	chr13	97190574	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.8241
chr14	66999662	67008732	LTR	ORR1A3	MaLR	chr14ORR1A367008380	ProperStrand	4	chr17	39846691	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr11	54617995	54618098	SINE	ID_B1	B4	chr11ID_B154618007	ProperStrand	1	chr16	19883802	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-inf
chr11	101510055	101512765	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int101510134	NonProperStrand	4	chr11	101509915	101510015	LTR	RLTR10E	ERVK	chr11RLTR10E101509821	NonProperStrand	3	3	-inf
chrX	58037903	58037955	antisense	Gm14661	.	ENSMUSG00000067835	ProperStrand	56	chr19	29021854	29021897	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	ProperStrand	11	1	-15.6370
chr14	89292837	89292937	LTR	IAP-d-int	ERVK	chr14IAP-d-int89292543	NonProperStrand	1	chr11	29110398	29110488	protein_coding	Smek2	intron	ENSMUSG00000020463	NonProperStrand	8	1	-inf
chr7	95797706	95797806	LINE	L1M3	L1	chr7L1M395797212	NonProperStrand	1	chr7	95798011	95798101	Other	RMER1C	Other	chr7RMER1C95797947	NonProperStrand	1	1	-inf
chr3	90658053	90658070	LINE	Lx	L1	chr3Lx90657827	ProperStrand	1	chr16	13916391	13916500	protein_coding	Mpv17l	intron	ENSMUSG00000022679	ProperStrand	42	1	-inf
chr17	39847551	39847959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	95715711	95720482	protein_coding	Ces1d	intron	ENSMUSG00000056973	ProperStrand	15	3	-4.1882
chr2	168931637	168931712	SINE	ID_B1	B4	chr2ID_B1168931557	NonProperStrand	1	chr19	46500540	46500608	protein_coding	Sufu	intron	ENSMUSG00000025231	ProperStrand	59	1	-inf
chr11	32648970	32649060	LTR	MTD	MaLR	chr11MTD32648774	NonProperStrand	3	chr11	32649073	32649173	SINE	B3	B2	chr11B332649072	NonProperStrand	3	2	-20.2273
chr2	61749376	61749466	LTR	MT2A	ERVL	chr2MT2A61749380	NonProperStrand	1	chr2	61749239	61749339	LTR	RLTR20B3	ERVK	chr2RLTR20B361748925	ProperStrand	1	1	-inf
chr3	69353959	69354007	protein_coding	Ppm1l	intron	ENSMUSG00000027784	ProperStrand	31	chr2	28849374	28849412	protein_coding	1700101E01Rik	intron	ENSMUSG00000079502	NonProperStrand	122	1	-11.9317
chr2	30030998	30031114	protein_coding-noncoding	D2Wsu81e	utr3	ENSMUSG00000039660	NonProperStrand	3	chr5	24828829	24828854	protein_coding	Mll3	intron	ENSMUSG00000038056	ProperStrand	134	1	-16.7522
chr14	79860902	79861002	protein_coding	Wbp4	utr3	ENSMUSG00000022023	NonProperStrand	30	chr9	8628272	8628362	protein_coding	Trpc6	intron	ENSMUSG00000031997	NonProperStrand	7	1	-17.7858
chr15	7117004	7117094	protein_coding	Lifr	intron	ENSMUSG00000054263	NonProperStrand	5	chr4	35030708	35030808	protein_coding	Mob3b	intron	ENSMUSG00000073910	ProperStrand	86	1	-16.4597
chr6	124817371	124817461	protein_coding-noncoding	Cd4	utr3	ENSMUSG00000023274	ProperStrand	9	chr6	124817262	124817362	protein_coding	Cd4	intron	ENSMUSG00000023274	ProperStrand	35	4	-inf
chr4	151453332	151453370	protein_coding	Plekhg5	intron	ENSMUSG00000039713	NonProperStrand	15	chr4	137511031	137511079	protein_coding	Ece1	intron	ENSMUSG00000057530	ProperStrand	325	1	-11.4554
chr12	85746986	85747020	protein_coding	Entpd5	intron	ENSMUSG00000021236	NonProperStrand	10	chr9	123461969	123462051	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr10	39130189	39130256	protein_coding	Fyn	intron	ENSMUSG00000019843	NonProperStrand	7	chr13	112578189	112578272	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-8.5326
chr5	146261177	146261196	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	58121738	58121839	protein_coding	Zfp692	intron	ENSMUSG00000037243	ProperStrand	13	1	-8.1236
chr6	38499168	38499268	SINE	B1_Mur1	Alu	chr6B1_Mur138499163	ProperStrand	1	chr6	38499063	38499153	SINE	ID4	ID	chr6ID438499030	NonProperStrand	1	1	-inf
chr6	4825847	4825937	SINE	MIR	MIR	chr6MIR4825820	ProperStrand	1	chr6	4887571	4887671	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	NonProperStrand	11	1	-inf
chr16	23156034	23156124	protein_coding	Adipoq	intron	ENSMUSG00000022878	ProperStrand	2	chr16	24495183	24495283	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	1	-16.6010
chr6	51433792	51433882	SINE	PB1D10	Alu	chr6PB1D1051433775	ProperStrand	1	chr6	51433284	51433384	protein_coding	Cbx3	utr3	ENSMUSG00000029836	NonProperStrand	2	1	-inf
chr5	146261022	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	55229859	55229947	protein_coding	Col14a1	intron	ENSMUSG00000022371	ProperStrand	77	1	-4.5821
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	75492095	75492300	SINE	B1F	Alu	chr11B1F75492084	NonProperStrand	2	1	-5.4040
chr1	65718653	65718753	LINE	Lx9	L1	chr1Lx965718631	ProperStrand	1	chr1	65718485	65718575	LTR	MLT1A0	MaLR	chr1MLT1A065718240	ProperStrand	1	1	-inf
chr7	25367834	25367979	LTR	IAPEz-int	ERVK	chr7IAPEz-int25365179	ProperStrand	1	chr14	78984250	78994428	protein_coding	Dgkh	intron	ENSMUSG00000034731	NonProperStrand	61	1	-inf
chr12	55599687	55599708	LTR	RMER15	ERVL	chr12RMER1555599646	NonProperStrand	1	chr2	90395156	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-inf
chr18	4932557	4932641	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr4	24628598	24628616	protein_coding	Klhl32	intron	ENSMUSG00000040387	ProperStrand	26	1	-10.7663
chr5	43229310	43229400	LINE	L1Md_F2	L1	chr5L1Md_F243229277	ProperStrand	3	chr5	43229173	43229273	LTR	IAPLTR2b	ERVK	chr5IAPLTR2b43228948	NonProperStrand	2	2	-inf
chr14	86878753	86878811	LINE	Lx6	L1	chr14Lx686877385	NonProperStrand	1	chr19	5800750	5800848	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr17	39846656	39846702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	135053629	135056356	SINE	B3	B2	chr5B3135055938	NonProperStrand	1	1	-inf
chr5	146260994	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	137641109	137641161	Low_complexity	CT-rich	Low_complexity	chr6CT-rich137641039	NonProperStrand	1	1	-inf
chr14	21609846	21618974	Simple_repeat	(TCCA)n	Simple_repeat	chr14(TCCA)n21618684	ProperStrand	5	chr14	21609755	21609845	protein_coding	Camk2g	intron	ENSMUSG00000021820	NonProperStrand	161	5	-inf
chr13	97490019	97490160	Other	RMER1A	Other	chr13RMER1A97489989	ProperStrand	17	chr13	97489889	97489979	Other	RMER1B	Other	chr13RMER1B97489338	ProperStrand	25	3	-21.6587
chr10	86823423	86823540	LTR	ORR1A4	MaLR	chr10ORR1A486823214	NonProperStrand	1	chr19	5797236	5797269	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr5	136407782	136407805	protein_coding-noncoding	Ywhag	utr3	ENSMUSG00000051391	ProperStrand	1	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr9	46031357	46031378	protein_coding	Sik3	utr3	ENSMUSG00000034135	ProperStrand	53	chr11	73083080	73083096	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-13.4212
chr9	97106590	97106611	LINE	L1_Mur3	L1	chr9L1_Mur397106156	ProperStrand	3	chr12	57239339	57239370	LTR	RMER17B	ERVK	chr12RMER17B57238874	ProperStrand	4	1	-inf
chr4	123622440	123622501	DNA	URR1B	MER1_type	chr4URR1B123622280	ProperStrand	1	chr4	123610565	123610617	protein_coding	Rragc	intron	ENSMUSG00000028646	NonProperStrand	41	1	-inf
chr9	113742639	113742742	protein_coding	Clasp2	intron	ENSMUSG00000033392	ProperStrand	70	chr8	72518087	72518134	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	1	-9.7825
chr7	30334576	30334595	LINE	L1Md_F2	L1	chr7L1Md_F230334212	NonProperStrand	1	chr14	20177203	20177318	LTR	MuRRS-int	ERV1	chr14MuRRS-int20176883	ProperStrand	2	1	-inf
chr16	8707028	8785996	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-4.8812
chr17	18539018	18539108	LTR	MERVL-int	ERVL	chr17MERVL-int18538987	NonProperStrand	1	chr17	18538523	18538623	LTR	MT2C_Mm	ERVL	chr17MT2C_Mm18538523	NonProperStrand	1	1	-inf
chr4	84366211	84366316	LINE	L1Md_T	L1	chr4L1Md_T84366145	NonProperStrand	1	chr17	39847981	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847438	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	114732945	114732963	SINE	PB1D10	Alu	chr8PB1D10114732928	NonProperStrand	1	1	-inf
chr2	33764392	33764473	SINE	ID_B1	B4	chr2ID_B133764343	ProperStrand	1	chr12	76936337	76936384	protein_coding	Syne2	intron	ENSMUSG00000063450	NonProperStrand	141	1	-inf
chr14	38864839	38864939	LINE	L1Md_F2	L1	chr14L1Md_F238859532	NonProperStrand	2	chr14	38865130	38865220	LINE	L1Md_F2	L1	chr14L1Md_F238864850	NonProperStrand	1	1	-inf
chr13	112578190	112578241	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr2	28550500	28550541	protein_coding	1700026L06Rik	intron	ENSMUSG00000026809	NonProperStrand	2	1	-11.5667
chr4	117153858	117153950	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	chr9	72331005	72331025	protein_coding	Tex9	intron	ENSMUSG00000032219	NonProperStrand	6	1	-14.0109
chr17	39846582	39846659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	119632441	119632462	Simple_repeat	(TCTA)n	Simple_repeat	chr5(TCTA)n119632432	NonProperStrand	1	1	-inf
chr12	76280670	76280709	Simple_repeat	(CAG)n	Simple_repeat	chr12(CAG)n76280663	ProperStrand	1	chr15	101188136	101188170	protein_coding	Krt80	intron	ENSMUSG00000037185	NonProperStrand	51	1	-inf
chrX	8144640	8145011	LINE	L1Md_F2	L1	chrXL1Md_F28144136	ProperStrand	10	chr17	39847170	39847213	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	3	-7.9585
chr17	39847277	39847324	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	25073589	25073646	protein_coding	Zfp61	intron	ENSMUSG00000050605	ProperStrand	4	1	-4.8204
chr4	84546192	84546260	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	chr13	44869574	44869640	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.0440
chr2	22744853	22744879	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-6.2642
chr13	90841513	90841603	LTR	RMER19C	ERVK	chr13RMER19C90841489	ProperStrand	1	chr13	90842068	90842168	SINE	RSINE1	B4	chr13RSINE190842074	ProperStrand	1	1	-inf
chr7	19035826	19035896	LINE	MusHAL1	L1	chr7MusHAL119035230	ProperStrand	4	chr1	81729045	81729065	Simple_repeat	(GA)n	Simple_repeat	chr1(GA)n81729017	ProperStrand	1	1	-inf
chr10	17124520	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr13	44869579	44869685	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-4.3668
chr17	39847847	39847952	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	110653627	110653672	Low_complexity	polypurine	Low_complexity	chr8polypurine110653627	ProperStrand	1	1	-inf
chr6	124706515	124706605	Low_complexity	C-rich	Low_complexity	chr6C-rich124706515	NonProperStrand	2	chr6	124706418	124706518	protein_coding	Atn1	utr5	ENSMUSG00000004263	ProperStrand	17	2	-inf
chr14	16418458	16420361	LTR	BGLII_B	ERVK	chr14BGLII_B16418367	ProperStrand	5	chr9	123461957	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr11	119897850	119897929	protein_coding	Aatk	intron	ENSMUSG00000025375	NonProperStrand	61	1	-11.7972
chr11	107012878	107012922	SINE	B1_Mm	Alu	chr11B1_Mm107012792	NonProperStrand	7	chr17	24962937	24962953	protein_coding	4930528F23Rik	intron	ENSMUSG00000024155	NonProperStrand	27	1	-18.0855
chr13	9834327	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr5	146302420	146302471	LTR	MERVL-int	ERVL	chr5MERVL-int146300781	ProperStrand	14	1	-12.0677
chr17	70963679	70963763	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr18	10151072	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-7.2232
chr13	44869926	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr17	29697961	29698007	protein_coding	Tbc1d22b	intron	ENSMUSG00000042203	ProperStrand	19	1	-6.7578
chr9	77983589	77983689	protein_coding	Ick	intron	ENSMUSG00000009828	ProperStrand	24	chr16	48589255	48589290	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	1	-15.7554
chr17	28215200	28215302	protein_coding	Tcp11	intron	ENSMUSG00000062859	NonProperStrand	4	chr16	17018289	17018328	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	1	-16.9275
chr17	39846428	39846562	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	60579712	60579730	LTR	RLTR11B	ERVK	chr19RLTR11B60579287	ProperStrand	1	1	-inf
chrX	4899368	4899389	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr13	56463735	56464960	LTR	RMER6B	ERVK	chr13RMER6B56463474	ProperStrand	5	1	-19.9608
chr7	27314260	27314311	LINE	L1_Mus4	L1	chr7L1_Mus427314201	ProperStrand	1	chr17	39843488	39843529	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39843484	39843529	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	32878650	32887029	antisense	Gm15614	.	ENSMUSG00000085234	NonProperStrand	24	1	-4.2456
chr17	39846519	39846556	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	38858892	38858930	protein_coding	Rpl35	intron	ENSMUSG00000062997	ProperStrand	3	1	-4.3017
chr5	146261266	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr11	33162961	33163027	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-3.4410
chr2	22744853	22744878	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr13	65921963	65922072	lincRNA	Gm7822	intron	ENSMUSG00000091975	ProperStrand	8	1	-10.9272
chr17	39845920	39846020	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr15	81825172	81825262	protein_coding	Xrcc6	intron	ENSMUSG00000022471	ProperStrand	10	1	-5.3115
chr6	142498635	142501452	LTR	MTD	MaLR	chr6MTD142501273	ProperStrand	8	chr6	142495728	142498581	LTR	MTEa-int	MaLR	chr6MTEa-int142497324	ProperStrand	7	4	-inf
chr12	77410154	77410188	protein_coding	Mthfd1	intron	ENSMUSG00000021048	NonProperStrand	5	chr6	32802175	32802284	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-14.7425
chr8	72320829	72320904	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	chr2	32963497	32963582	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-9.0046
chr2	112480517	112480617	protein_coding-noncoding	Ryr3	utr3	ENSMUSG00000057378	ProperStrand	1	chr2	112480650	112480740	protein_coding	Ryr3	intron	ENSMUSG00000057378	ProperStrand	31	1	-inf
chr6	124741224	124741283	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr1	72244314	72244401	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-14.6339
chr11	3917276	3917397	LTR	RLTR45-int	ERVK	chr11RLTR45-int3916230	NonProperStrand	3	chr8	12888602	12888635	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-14.9894
mmu-miR-1195	1	18	miRNA	mmu-miR-1195	.	mmu-miR-1195	NonProperStrand	2	chr3	95636149	95636254	protein_coding	Prpf3	intron	ENSMUSG00000015748	NonProperStrand	78	1	-18.6632
chr6	100255297	100255375	SINE	PB1D7	Alu	chr6PB1D7100255311	NonProperStrand	1	chr6	100255218	100255270	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n100255221	NonProperStrand	1	1	-inf
chr12	98800371	98800455	LINE	L1Md_T	L1	chr12L1Md_T98799524	ProperStrand	1	chr5	148315305	148315324	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-inf
chr11	73083078	73083105	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	chr3	62375049	62375086	protein_coding	Gpr149	intron	ENSMUSG00000043441	NonProperStrand	10	1	-16.8518
chr6	3201509	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	45653516	45653569	lincRNA	Gm12408	intron	ENSMUSG00000085980	NonProperStrand	1	1	-inf
chr10	23785753	23785821	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr6	113243514	113243611	protein_coding-noncoding	Cpne9	utr5	ENSMUSG00000030270	ProperStrand	5	1	-15.2324
chr13	54552147	54552193	LTR	MTB_Mm	MaLR	chr13MTB_Mm54552084	NonProperStrand	1	chr5	68211330	68211429	protein_coding	Atp8a1	intron	ENSMUSG00000037685	ProperStrand	23	1	-inf
chr4	43492796	43492875	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr2	112772968	112772986	protein_coding	Ryr3	intron	ENSMUSG00000057378	NonProperStrand	77	1	-6.5981
chr1	172485019	172485061	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-11.2139
chr4	123429207	123429303	LINE	L4	RTE	chr4L4123428942	ProperStrand	1	chr8	115065163	115065220	LINE	L1Md_F2	L1	chr8L1Md_F2115063660	ProperStrand	1	1	-inf
chr1	4778453	4778553	LTR	RLTR13C2	ERVK	chr1RLTR13C24777642	ProperStrand	3	chr1	4778576	4778666	LTR	RLTR1B	ERV1	chr1RLTR1B4778546	NonProperStrand	3	3	-inf
chr15	77159464	77159532	LTR	RMER10A	ERVL	chr15RMER10A77159271	NonProperStrand	1	chr10	42197206	42197284	protein_coding	Lace1	intron	ENSMUSG00000038302	ProperStrand	56	1	-inf
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	139417343	139418458	LTR	MTEb-int	MaLR	chr4MTEb-int139418119	ProperStrand	1	1	-inf
chr3	6834463	6834553	LINE	Lx2B	L1	chr3Lx2B6834325	ProperStrand	1	chr3	4895733	4895835	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int4893113	NonProperStrand	1	1	-inf
chr12	87550439	87550529	Simple_repeat	(GA)n	Simple_repeat	chr12(GA)n87550448	ProperStrand	1	chr17	6923684	6923784	protein_coding	Sytl3	intron	ENSMUSG00000041831	NonProperStrand	2	1	-inf
chr15	26380710	26380728	LINE	Lx7	L1	chr15Lx726380154	ProperStrand	4	chr17	39847302	39847331	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	24	chr5	115490313	115490377	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-11.0077
chr12	51843382	51843436	LINE	L1Md_F2	L1	chr12L1Md_F251841932	ProperStrand	1	chr9	123461892	123461962	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	76466286	76466376	SINE	B4	B4	chr11B476466310	ProperStrand	1	chr11	76467163	76467263	SINE	RSINE1	B4	chr11RSINE176467115	ProperStrand	1	1	-inf
chr5	33521487	33521509	LTR	RMER19B	ERVK	chr5RMER19B33521324	ProperStrand	29	chr7	4793559	4794129	processed_transcript	Gm15525	.	ENSMUSG00000084815	NonProperStrand	48	1	-13.9398
chr13	54190147	54190186	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	chr13	112578180	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-4.5542
chr3	153912125	153912206	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr5	138585704	138585764	protein_coding	Zfp113	utr3	ENSMUSG00000037007	ProperStrand	1	1	-inf
chr4	53676268	53676368	protein_coding	Fsd1l	intron	ENSMUSG00000054752	ProperStrand	11	chr4	53676080	53676170	pseudogene	Gm12470	.	ENSMUSG00000081516	ProperStrand	1	1	-inf
chr5	33506677	33506773	LINE	Lx8	L1	chr5Lx833506547	NonProperStrand	23	chr9	118674951	118675009	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-12.6432
chr17	39847129	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	33058746	33060106	protein_coding-noncoding	Rpl35a	utr5	ENSMUSG00000060636	ProperStrand	14	2	-4.2566
chr10	95336384	95336422	LINE	Lx4A	L1	chr10Lx4A95335572	ProperStrand	2	chr11	47863248	47863360	LINE	L2b	L2	chr11L2b47863099	ProperStrand	1	1	-inf
chr17	39848482	39848588	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	172239868	172240015	protein_coding	Nos1ap	intron	ENSMUSG00000038473	ProperStrand	20	1	-3.6263
chr17	46268082	46268144	protein_coding	Rsph9	intron	ENSMUSG00000023966	ProperStrand	32	chr9	100744464	100744498	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	1	-12.6404
chr10	82892774	82892797	LTR	MERVK26-int	ERVK	chr10MERVK26-int82892370	NonProperStrand	3	chr13	45625881	45625981	protein_coding	Gmpr	intron	ENSMUSG00000000253	NonProperStrand	12	3	-inf
chr3	139008394	139008499	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	NonProperStrand	81	chr1	151691400	151691437	protein_coding	Pla2g4a	intron	ENSMUSG00000056220	ProperStrand	10	1	-15.0826
chr11	109011748	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	95734057	95734106	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-6.2714
chr13	55674070	55675916	LTR	MTB	MaLR	chr13MTB55673998	ProperStrand	5	chr13	55670276	55673941	protein_coding	Fam193b	intron	ENSMUSG00000021495	NonProperStrand	28	1	-18.8243
chr19	19749788	19749888	LINE	Lx	L1	chr19Lx19748670	NonProperStrand	1	chr19	19750096	19750186	LINE	Lx	L1	chr19Lx19749857	NonProperStrand	1	1	-inf
chr17	39848623	39848696	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr9	95488972	95489035	SINE	RSINE1	B4	chr9RSINE195488984	NonProperStrand	1	1	-inf
chr3	46860190	46860241	LINE	L1_Mus1	L1	chr3L1_Mus146859926	ProperStrand	2	chr17	34596389	34596498	protein_coding	BC051142	intron	ENSMUSG00000057246	ProperStrand	69	1	-18.8980
chr9	123462100	123462124	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	32181863	32186346	protein_coding	Kcnj1	intron	ENSMUSG00000041248	ProperStrand	9	1	-4.5963
chr17	39846410	39846482	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	17909739	17909801	Unknown	MurSatRep1	Unknown	chr12MurSatRep117909753	ProperStrand	1	1	-inf
chr12	40161216	40161316	LTR	IAPEz-int	ERVK	chr12IAPEz-int40160246	NonProperStrand	2	chr2	142688612	142688702	protein_coding	Kif16b	intron	ENSMUSG00000038844	ProperStrand	33	2	-inf
chr17	39846647	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	100850144	100850169	LTR	MTA_Mm	MaLR	chr7MTA_Mm100850109	ProperStrand	1	1	-inf
chr10	58864880	58864950	LINE	MusHAL1	L1	chr10MusHAL158863964	NonProperStrand	3	chr5	31178189	31178233	protein_coding	Tmem214	exon	ENSMUSG00000038828	NonProperStrand	29	1	-19.5983
chr11	109011795	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	99141125	99141166	protein_coding	Prpf40b	intron	ENSMUSG00000023007	ProperStrand	26	1	-7.7685
chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr11	61855013	61855125	protein_coding	Specc1	intron	ENSMUSG00000042331	ProperStrand	27	1	-7.5619
chr7	144477559	144477625	protein_coding	Ebf3	intron	ENSMUSG00000010476	ProperStrand	116	chr9	56223577	56223653	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-7.1843
chr4	131901062	131901152	protein_coding-noncoding	Rcc1	utr3	ENSMUSG00000028896	NonProperStrand	8	chr4	131901207	131901307	protein_coding	Rcc1	intron	ENSMUSG00000028896	NonProperStrand	30	1	-17.5395
chr6	85015234	85015286	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	chr11	88376570	88376629	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-4.1278
chr11	14164787	14164877	LTR	IAPEY3_LTR	ERVK	chr11IAPEY3_LTR14164575	ProperStrand	1	chr11	14164959	14165059	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int14164875	ProperStrand	1	1	-inf
chr17	39846461	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	32859259	32859297	protein_coding	Pik3cg	utr3	ENSMUSG00000020573	NonProperStrand	2	1	-5.3533
chr10	80056071	80056242	SINE	B1_Mm	Alu	chr10B1_Mm80056178	ProperStrand	18	chr9	123461957	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.2529
chr16	32922867	32922946	protein_coding	Lrch3	intron	ENSMUSG00000022801	ProperStrand	84	chr12	80637594	80640994	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-10.9792
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr8	25973351	25973377	protein_coding	Adam32	intron	ENSMUSG00000037437	ProperStrand	31	1	-7.8903
chr17	39847437	39847499	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	96269766	96269814	LTR	MT2A	ERVL	chr3MT2A96269392	ProperStrand	5	1	-3.2379
chr14	67698894	67698984	SINE	B3A	B2	chr14B3A67698809	NonProperStrand	1	chr14	67698413	67698513	SINE	ID	ID	chr14ID67698420	NonProperStrand	1	1	-inf
chr15	79695863	79695947	LINE	L1M4	L1	chr15L1M479695821	NonProperStrand	2	chr17	39846962	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr15	85874515	85874605	LINE	L1MEd	L1	chr15L1MEd85874401	ProperStrand	3	chr15	85874632	85874732	SINE	B3	B2	chr15B385874648	ProperStrand	2	2	-inf
chrX	95156280	95156341	LINE	L1Md_T	L1	chrXL1Md_T95155497	ProperStrand	2	chr1	64061601	64061659	LTR	RMER16	ERVK	chr1RMER1664061356	NonProperStrand	2	2	-inf
chr8	111818787	111818844	LINE	L1Md_F3	L1	chr8L1Md_F3111816267	ProperStrand	5	chr8	111818922	111819020	LINE	Lx7	L1	chr8Lx7111818898	ProperStrand	1	1	-inf
chr2	5379238	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	17776748	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	2	-4.8463
chr17	35077877	35078063	LTR	RMER17C	ERVK	chr17RMER17C35077691	NonProperStrand	2	chr17	35077931	35078127	SINE	B3	B2	chr17B335078041	ProperStrand	2	2	-inf
chr17	39847702	39847777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	24165022	24165077	LTR	MTC	MaLR	chr17MTC24164965	ProperStrand	3	1	-4.3512
chr2	170515771	170515871	LTR	RLTR9A	ERVK	chr2RLTR9A170515685	ProperStrand	1	chr2	170515540	170515630	SINE	B1_Mus1	Alu	chr2B1_Mus1170515537	ProperStrand	1	1	-inf
chr11	109011821	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	100615700	100615734	protein_coding	Slc4a8	intron	ENSMUSG00000023032	ProperStrand	6	1	-10.8292
chr1	168399814	168399907	LINE	L1Md_T	L1	chr1L1Md_T168399305	ProperStrand	2	chr17	39846411	39846463	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr13	52624910	52625002	protein_coding	Diras2	intron	ENSMUSG00000047842	NonProperStrand	17	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-11.4598
chr13	9834305	9834373	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr1	178330601	178330638	LTR	MER21B	ERV1	chr1MER21B178330411	NonProperStrand	14	1	-12.0677
chr2	164130127	164130194	LINE	L1MA4A	L1	chr2L1MA4A164129997	ProperStrand	1	chr2	38595328	38595349	protein_coding	Nr6a1	intron	ENSMUSG00000063972	NonProperStrand	31	1	-inf
chr4	132309940	132310002	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr2	129204147	129204175	pseudogene	Gm14045	.	ENSMUSG00000081888	NonProperStrand	11	1	-13.1874
chr9	123462127	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	174562220	174562254	protein_coding	Dusp23	intron	ENSMUSG00000026544	NonProperStrand	1	1	-inf
chrX	151068680	151068705	LTR	MTE2b-int	MaLR	chrXMTE2b-int151068248	ProperStrand	1	chrX	151067986	151068109	LTR	MTE2b	MaLR	chrXMTE2b151067894	ProperStrand	1	1	-inf
chr16	96192522	96192612	LTR	MT-int	MaLR	chr16MT-int96192484	ProperStrand	1	chr12	34783642	34783742	protein_coding	Hdac9	intron	ENSMUSG00000004698	ProperStrand	15	1	-inf
chr6	58397033	58397123	LINE	Lx2B	L1	chr6Lx2B58397002	NonProperStrand	1	chr6	58396930	58397030	LINE	Lx3C	L1	chr6Lx3C58396944	ProperStrand	1	1	-inf
chr3	98334564	98339700	LINE	L1Md_T	L1	chr3L1Md_T98334036	ProperStrand	3	chr3	98339714	98339804	LINE	L1_Mm	L1	chr3L1_Mm98339264	ProperStrand	5	1	-inf
chr18	77780098	77780153	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr5	25275710	25275953	protein_coding	Actr3b	intron	ENSMUSG00000056367	NonProperStrand	66	1	-9.6163
chr4	44325864	44325896	protein_coding	Melk	intron	ENSMUSG00000035683	ProperStrand	27	chr1	63047990	63048032	protein_coding	Ino80d	intron	ENSMUSG00000040865	ProperStrand	58	1	-13.7090
chr17	39846941	39846993	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	22478057	22478146	protein_coding	Zfp944	intron	ENSMUSG00000033972	NonProperStrand	2	1	-5.3533
chr3	34057193	34057296	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr4	35144543	35144570	protein_coding	3110043O21Rik	intron	ENSMUSG00000028300	ProperStrand	10	1	-14.5314
chr15	83389603	83389693	LTR	RMER13A	ERVK	chr15RMER13A83389183	NonProperStrand	3	chr14	79861963	79862026	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	30	1	-19.4498
chr3	62145144	62145234	protein_coding-noncoding	Arhgef26	utr5	ENSMUSG00000036885	NonProperStrand	1	chr3	62144981	62145081	protein_coding	Arhgef26	intron	ENSMUSG00000036885	NonProperStrand	4	1	-inf
chr10	59225567	59225667	protein_coding	Micu1	intron	ENSMUSG00000020111	NonProperStrand	33	chr9	75228426	75228516	protein_coding	Mapk6	intron	ENSMUSG00000042688	ProperStrand	2	1	-20.1504
chr15	100171703	100173287	LTR	MTA_Mm	MaLR	chr15MTA_Mm100172997	ProperStrand	1	chr15	100173288	100174483	SINE	B2_Mm2	B2	chr15B2_Mm2100174308	ProperStrand	1	1	-inf
chr17	39847183	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	41412449	41412561	protein_coding	Nudt2	intron	ENSMUSG00000028443	NonProperStrand	9	1	-3.1539
chr5	146261142	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	10151086	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-6.0645
chr1	134304863	134304942	LTR	MTE-int	MaLR	chr1MTE-int134304313	ProperStrand	2	chr2	163073052	163073118	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-15.8482
chr1	183322313	183322375	protein_coding	Cnih3	intron	ENSMUSG00000026514	ProperStrand	26	chr4	119135974	119136022	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-9.4168
chr16	35981729	35981755	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.7193
chr18	24241848	24241938	LINE	Lx9	L1	chr18Lx924241696	ProperStrand	1	chr18	24242048	24242148	LTR	RMER19C	ERVK	chr18RMER19C24242011	NonProperStrand	2	1	-inf
chr3	103047898	103047967	LTR	RMER2	ERV1	chr3RMER2103047795	ProperStrand	1	chr3	103048864	103048943	SINE	B1_Mur1	Alu	chr3B1_Mur1103048850	ProperStrand	1	1	-inf
chr8	13417153	13417253	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	chr14	33967407	33967497	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-13.4939
chr3	100956867	100956957	LTR	MTEa	MaLR	chr3MTEa100956844	ProperStrand	1	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	39847636	39847683	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	135234061	135234087	SINE	B4	B4	chr5B4135233939	NonProperStrand	1	1	-inf
chr17	39846842	39846863	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	129172198	129172292	antisense	Gm12979	.	ENSMUSG00000086336	ProperStrand	2	1	-5.3533
chr6	81946117	81946148	LINE	L1Md_T	L1	chr6L1Md_T81945661	ProperStrand	2	chr17	39847215	39847256	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr15	50715263	50715325	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	chrX	85197735	85197809	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	NonProperStrand	79	2	-18.3727
chr17	39847183	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	14999523	14999539	protein_coding	Arhgef10	exon	ENSMUSG00000071176	NonProperStrand	3	1	-5.4882
chr12	101070514	101070600	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	ProperStrand	245	chr4	132255472	132255503	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-8.0094
chr12	59901512	59901614	LTR	MLT1F-int	MaLR	chr12MLT1F-int59901490	NonProperStrand	1	chr12	59901398	59901488	Simple_repeat	(GGAGAA)n	Simple_repeat	chr12(GGAGAA)n59901312	ProperStrand	1	1	-inf
chr14	30479639	30479742	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	112	chr13	44869576	44869619	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.3264
chr17	74311284	74311386	LINE	L1M3e	L1	chr17L1M3e74311084	ProperStrand	1	chr17	39846718	39846755	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	115349248	115349338	LINE	L1VL4	L1	chr10L1VL4115347635	NonProperStrand	2	chr17	39846747	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr10	18555008	18555108	LINE	L1_Mur1	L1	chr10L1_Mur118554881	NonProperStrand	1	chr10	18555406	18555496	LINE	Lx3C	L1	chr10Lx3C18555408	NonProperStrand	1	1	-inf
chr8	114913654	114913708	LTR	ORR1B1-int	MaLR	chr8ORR1B1-int114912741	ProperStrand	4	chr6	38239269	38239345	protein_coding	Zc3hav1l	utr3	ENSMUSG00000047749	ProperStrand	5	1	-inf
chr16	17323335	17323435	protein_coding	Pi4ka	intron	ENSMUSG00000041720	ProperStrand	50	chr14	21522431	21522521	protein_coding	Chchd1	intron	ENSMUSG00000063787	ProperStrand	24	1	-14.2512
chr3	90091437	90091527	LTR	MurERV4-int	ERVK	chr3MurERV4-int90090736	NonProperStrand	2	chr3	90091545	90091645	SINE	B1_Mm	Alu	chr3B1_Mm90091529	NonProperStrand	2	2	-inf
chr5	140505751	140505820	protein_coding	Mad1l1	intron	ENSMUSG00000029554	NonProperStrand	52	chr2	10471040	10471099	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-11.3873
chr16	82574522	82574622	LTR	ETnERV2-int	ERVK	chr16ETnERV2-int82573441	NonProperStrand	1	chr16	81072275	81072365	LTR	IAPLTR1_Mm	ERVK	chr16IAPLTR1_Mm81071918	NonProperStrand	1	1	-inf
chr17	39846428	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	17221276	17221367	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	6	-5.0602
chr17	39848682	39848721	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr14	100212291	100212320	LTR	LTR89	ERVL?	chr14LTR89100212281	NonProperStrand	1	1	-inf
chr17	39846822	39846872	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	17589232	17589253	protein_coding	Lix1	intron	ENSMUSG00000047786	ProperStrand	3	1	-4.3017
chr9	74964141	74964241	protein_coding-noncoding	Myo5a	utr5	ENSMUSG00000034593	ProperStrand	4	chr9	74963979	74964069	protein_coding	Myo5a	exon	ENSMUSG00000034593	ProperStrand	44	1	-18.5642
chr18	67645384	67645475	LTR	ORR1B1	MaLR	chr18ORR1B167645158	ProperStrand	1	chr15	8334761	8334812	protein_coding	Nipbl	intron	ENSMUSG00000022141	ProperStrand	59	1	-inf
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr11	102308803	102308936	protein_coding	Fam171a2	utr5	ENSMUSG00000034685	ProperStrand	37	1	-12.6058
chr17	39846461	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	56573060	56573081	protein_coding	Gramd3	intron	ENSMUSG00000001700	ProperStrand	9	2	-3.9140
chr3	91099289	91099425	LINE	L1Md_T	L1	chr3L1Md_T91098735	NonProperStrand	8	chr4	149120031	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.6863
chr3	116489182	116489199	protein_coding	Agl	intron	ENSMUSG00000033400	ProperStrand	7	chr8	15029177	15029204	protein_coding	Kbtbd11	exon	ENSMUSG00000055675	ProperStrand	21	1	-18.4191
chr4	129520407	129520468	protein_coding	Ptp4a2	intron	ENSMUSG00000028788	ProperStrand	78	chr9	75051901	75051997	protein_coding	Myo5a	intron	ENSMUSG00000034593	ProperStrand	44	1	-12.1206
chr17	39846410	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	140701626	140702186	SINE	B3A	B2	chr4B3A140702080	NonProperStrand	1	1	-inf
chr16	35038933	35038969	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	chr4	139016920	139017012	protein_coding	Ubr4	intron	ENSMUSG00000066036	NonProperStrand	18	1	-12.2737
chr19	19281339	19281439	LINE	Lx8	L1	chr19Lx819280913	ProperStrand	1	chr8	13416986	13417076	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	1	-inf
chr9	27087410	27087463	LINE	L1Md_F2	L1	chr9L1Md_F227087191	NonProperStrand	2	chr14	21075139	21075191	Simple_repeat	(GGA)n	Simple_repeat	chr14(GGA)n21074616	ProperStrand	2	1	-19.8939
chr2	156388321	156388421	protein_coding	0610011L14Rik	intron	ENSMUSG00000027628	NonProperStrand	56	chr11	85513118	85513208	protein_coding	Bcas3	intron	ENSMUSG00000059439	NonProperStrand	49	1	-12.5703
chr5	122005893	122006357	LINE	L1M2	L1	chr5L1M2122005815	NonProperStrand	4	chr5	122006397	122006487	LTR	ORR1A2	MaLR	chr5ORR1A2122006277	ProperStrand	4	4	-inf
chr16	23110379	23111434	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr9	123461905	123462128	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	8	-5.6701
chr17	29752144	29752234	protein_coding	Ftsjd2	intron	ENSMUSG00000024019	NonProperStrand	2	chr17	29751768	29751868	protein_coding	Rnf8	utr5	ENSMUSG00000090083	NonProperStrand	2	1	-19.8939
chr19	8912495	8912730	protein_coding	Bscl2	intron	ENSMUSG00000071657	ProperStrand	17	chr19	8911889	8912492	protein_coding	Gng3	utr3	ENSMUSG00000071658	NonProperStrand	6	4	-inf
chr16	23111616	23111682	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr1	136676222	136676278	protein_coding-noncoding	Ppp1r12b	utr3	ENSMUSG00000073557	NonProperStrand	5	1	-15.0867
chr17	39847222	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	50624005	50624067	SINE	B3A	B2	chrXB3A50623925	NonProperStrand	1	1	-inf
chr6	3201493	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	3297374	3297397	protein_coding	Myadm	exon	ENSMUSG00000068566	ProperStrand	30	1	-4.1758
chr9	58317790	58317878	SINE	MIRb	MIR	chr9MIRb58317721	NonProperStrand	6	chr9	123462099	123462162	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr3	88101466	88101697	protein_coding	Cct3	intron	ENSMUSG00000001416	ProperStrand	26	chr3	88099016	88100711	protein_coding	1700021C14Rik	utr5	ENSMUSG00000010538	NonProperStrand	23	5	-inf
chr17	39847338	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	31209880	31210003	protein_coding	Ost4	utr5	ENSMUSG00000038803	ProperStrand	1	1	-inf
chr17	39846372	39847533	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr17	39847560	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	3	-inf
chr4	152267768	152267858	Simple_repeat	(CACAC)n	Simple_repeat	chr4(CACAC)n152267687	ProperStrand	3	chr4	152267903	152268003	Simple_repeat	(CACAC)n	Simple_repeat	chr4(CACAC)n152267882	ProperStrand	3	3	-inf
chr16	4042659	4042731	protein_coding	Trap1	intron	ENSMUSG00000005981	ProperStrand	68	chr5	128118572	128118650	protein_coding	Glt1d1	intron	ENSMUSG00000049971	NonProperStrand	20	1	-14.0019
chr9	123461924	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	100801928	100814534	protein_coding	Sec31a	intron	ENSMUSG00000035325	NonProperStrand	5	2	-9.8714
chr10	62584728	62585550	protein_coding	Mypn	exon	ENSMUSG00000020067	ProperStrand	87	chr13	44869594	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.7910
chr9	47816178	47816252	LINE	Lx7	L1	chr9Lx747815183	NonProperStrand	1	chr4	43492784	43492849	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-inf
chr17	39847440	39847487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	80718656	80718706	LTR	MER21B	ERV1	chr8MER21B80718459	NonProperStrand	1	1	-inf
chr19	50853755	50853854	LINE	L1Md_T	L1	chr19L1Md_T50853740	NonProperStrand	1	chr19	50853951	50854040	LINE	L1Md_T	L1	chr19L1Md_T50853769	NonProperStrand	1	1	-inf
chr1	179777772	179779638	LTR	ORR1A2-int	MaLR	chr1ORR1A2-int179777640	NonProperStrand	2	chr9	118674951	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr11	62129966	62130031	protein_coding	Ttc19	intron	ENSMUSG00000042298	ProperStrand	15	chr7	141152980	141153059	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-12.5937
chr17	39848165	39848192	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	136395579	136395598	SINE	B3	B2	chr4B3136395487	ProperStrand	1	1	-inf
chr5	115489456	115489603	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr2	5379291	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	4	-7.5460
chr2	5379310	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr11	69732754	69732844	protein_coding	Eif5a	utr5	ENSMUSG00000078812	NonProperStrand	1	1	-inf
chr12	67667961	67667998	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr5	113144820	113144906	protein_coding	Myo18b	intron	ENSMUSG00000072720	ProperStrand	234	1	-8.7183
chr4	3835285	3835593	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-10.4546
chr5	65799288	65799378	protein_coding	Lias	intron	ENSMUSG00000029199	ProperStrand	15	chr12	41361936	41362038	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-11.4554
chr13	21862327	21862346	antisense	Gm11274	.	ENSMUSG00000085331	ProperStrand	1	chr12	78350926	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr16	4061452	4061549	protein_coding	Trap1	intron	ENSMUSG00000005981	ProperStrand	68	chr13	97190561	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.8800
chr17	39847633	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	134979066	134979156	protein_coding	Stx4a	intron	ENSMUSG00000030805	ProperStrand	5	1	-3.2379
chr3	95662902	95662940	lincRNA	Gm16884	intron	ENSMUSG00000087673	ProperStrand	40	chr2	35730714	35730761	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	1	-8.4887
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr6	119658292	119658323	protein_coding	Erc1	intron	ENSMUSG00000030172	ProperStrand	98	1	-13.2664
chr1	89513271	89513326	LTR	ORR1E	MaLR	chr1ORR1E89513099	NonProperStrand	5	chr9	123462089	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39843733	39843824	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chrX	13817128	13817168	Low_complexity	T-rich	Low_complexity	chrXT-rich13817127	NonProperStrand	1	1	-inf
chr1	17230871	17230961	LTR	MYSERV6-int	ERVK	chr1MYSERV6-int17230890	NonProperStrand	1	chr1	17230740	17230840	LTR	RLTR13A	ERVK	chr1RLTR13A17230081	ProperStrand	1	1	-inf
chr2	27945576	27945676	SINE	B4	B4	chr2B427945564	NonProperStrand	1	chr2	27945491	27945581	SINE	RSINE1	B4	chr2RSINE127945449	NonProperStrand	1	1	-inf
chr17	39848497	39848557	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr18	4671565	4671635	protein_coding	9430020K01Rik	intron	ENSMUSG00000033960	ProperStrand	14	1	-4.3119
chr17	7219795	7219885	LTR	ORR1D2	MaLR	chr17ORR1D27219648	ProperStrand	1	chr17	7219965	7220065	SINE	B2_Mm2	B2	chr17B2_Mm27219921	NonProperStrand	1	1	-inf
chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	chr6	112837460	112837597	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	95	1	-11.2022
chr3	79556943	79556982	LINE	L1_Mur2	L1	chr3L1_Mur279556871	ProperStrand	1	chr17	39847674	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	96639351	96639391	LINE	L1Md_F3	L1	chr15L1Md_F396637839	NonProperStrand	7	chr15	96640875	96640958	LINE	L1Md_F3	L1	chr15L1Md_F396640795	NonProperStrand	2	1	-21.4874
chr2	153491661	153491734	protein_coding	Dnmt3b	exon	ENSMUSG00000027478	NonProperStrand	32	chr2	153526798	153526881	pseudogene	Gm14490	.	ENSMUSG00000082079	NonProperStrand	12	2	-21.4058
chr17	39846054	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	26580346	26580414	protein_coding	Zcchc24	intron	ENSMUSG00000055538	NonProperStrand	3	1	-4.3017
chr11	22980136	22980236	LINE	Lx8	L1	chr11Lx822980003	NonProperStrand	1	chr11	22983395	22983485	LTR	RLTR25A	ERVK	chr11RLTR25A22982853	ProperStrand	1	1	-inf
chr13	114455139	114455234	LINE	L1Md_F2	L1	chr13L1Md_F2114455016	NonProperStrand	2	chr17	39846431	39846463	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39846981	39847065	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	104178290	104178350	SINE	B4A	B4	chr13B4A104178297	ProperStrand	1	1	-inf
chr5	146261024	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	19113926	19114002	LTR	MTB	MaLR	chr9MTB19113773	ProperStrand	1	1	-inf
chr16	17222212	17222239	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	11	chr5	148315311	148315328	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-14.9437
chr6	35103847	35103937	LINE	L1_Mur3	L1	chr6L1_Mur335103856	ProperStrand	5	chr6	35103727	35103827	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n35103754	NonProperStrand	1	1	-inf
chr11	21310546	21310638	LINE	L1Md_F	L1	chr11L1Md_F21309776	NonProperStrand	1	chr11	21310704	21310804	LTR	ORR1A0	MaLR	chr11ORR1A021310623	ProperStrand	1	1	-inf
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	178330323	178330619	LTR	MER21B	ERV1	chr1MER21B178330411	NonProperStrand	14	1	-4.0485
chr8	18680313	18680338	protein_coding	Mcph1	intron	ENSMUSG00000039842	NonProperStrand	5	chr19	8908121	8908151	protein_coding	Hnrnpul2	utr3	ENSMUSG00000071659	ProperStrand	40	1	-18.1291
chr15	12900698	12900779	LINE	L1_Mus4	L1	chr15L1_Mus412900441	ProperStrand	2	chr17	39846419	39846457	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr19	14447911	14448007	Other	RMER1B	Other	chr19RMER1B14447562	NonProperStrand	1	chr4	32485919	32485973	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	1	-inf
chr11	69668490	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr9	65201724	65201816	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	2	-12.8511
chr4	118432607	118432624	LTR	ETnERV2-int	ERVK	chr4ETnERV2-int118432474	ProperStrand	3	chr2	115751527	115751614	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	1	-16.4721
chr3	68610807	68610826	LINE	L2	L2	chr3L268610594	ProperStrand	1	chr3	68610184	68610213	LTR	RMER10A	ERVL	chr3RMER10A68610161	ProperStrand	1	1	-inf
chr9	58876372	58876388	protein_coding	Neo1	intron	ENSMUSG00000032340	NonProperStrand	25	chr13	44869576	44869644	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.2062
chr9	21690640	21690667	LTR	IAPLTR1a_Mm	ERVK	chr9IAPLTR1a_Mm21690355	ProperStrand	1	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr9	123462079	123462120	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	74435731	74435747	protein_coding	E130309D14Rik	intron	ENSMUSG00000069814	NonProperStrand	8	1	-4.8360
chr13	33263744	33263844	LINE	L1Md_F	L1	chr13L1Md_F33263609	ProperStrand	1	chr13	33263445	33263535	LTR	MTE2a	MaLR	chr13MTE2a33263430	ProperStrand	1	1	-inf
chr13	97071974	97072093	LINE	L1Md_F2	L1	chr13L1Md_F297071875	ProperStrand	3	chr13	97087444	97087469	LINE	L1VL4	L1	chr13L1VL497087327	NonProperStrand	5	1	-inf
chr9	53170407	53170497	protein_coding	Exph5	intron	ENSMUSG00000034584	ProperStrand	5	chr9	53020584	53020685	protein_coding	Ddx10	intron	ENSMUSG00000053289	ProperStrand	7	1	-21.1751
chr17	70963741	70963796	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr17	34115526	34115689	pseudogene	H2-K2	.	ENSMUSG00000067203	ProperStrand	36	1	-7.2232
chr4	131874273	131874404	protein_coding	Trnau1ap	intron	ENSMUSG00000028898	NonProperStrand	42	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-12.8116
chr9	13603206	13603296	protein_coding	Mtmr2	intron	ENSMUSG00000031918	ProperStrand	4	chr9	13464128	13464228	protein_coding	Maml2	intron	ENSMUSG00000031925	NonProperStrand	4	1	-inf
chr13	9834318	9834407	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr15	96289543	96289606	protein_coding	Scaf11	intron	ENSMUSG00000033228	NonProperStrand	3	1	-15.4797
chr10	18355301	18355393	protein_coding	D10Bwg1379e	intron	ENSMUSG00000019852	NonProperStrand	72	chr16	4497143	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	1	-13.4297
chr5	111237869	111237888	protein_coding	Ulk1	intron	ENSMUSG00000029512	NonProperStrand	2	chr4	108176983	108177017	protein_coding	Zcchc11	intron	ENSMUSG00000034610	NonProperStrand	31	1	-20.7076
chr8	69115902	69115992	SINE	RSINE1	B4	chr8RSINE169115843	ProperStrand	1	chr8	69116037	69116137	Simple_repeat	(CATA)n	Simple_repeat	chr8(CATA)n69116018	ProperStrand	1	1	-inf
chr11	109012016	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr16	20541005	20541219	protein_coding-noncoding	Ap2m1	utr5	ENSMUSG00000022841	ProperStrand	2	1	-19.3930
chr2	68955545	68955621	LINE	L1MC1	L1	chr2L1MC168955288	ProperStrand	1	chr2	18168085	18168151	protein_coding	Dnajc1	intron	ENSMUSG00000026740	NonProperStrand	79	1	-inf
chr13	29403785	29403808	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr7	131402329	131402362	sense_intronic	Gm15338	.	ENSMUSG00000085899	ProperStrand	34	1	-9.0908
chr11	74675333	74675370	protein_coding	Sgsm2	intron	ENSMUSG00000038351	ProperStrand	17	chr4	155557195	155557492	protein_coding	Agrn	intron	ENSMUSG00000041936	NonProperStrand	37	1	-15.5747
chr8	117425942	117425965	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr16	22135472	22135505	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-4.1117
chr17	39846464	39846525	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	44019943	44019960	protein_coding	Tpp2	intron	ENSMUSG00000041763	NonProperStrand	1	1	-inf
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr10	95414703	95414770	protein_coding	Eea1	intron	ENSMUSG00000036499	NonProperStrand	56	1	-8.0155
chr9	44779322	44779412	protein_coding	Cd3g	intron	ENSMUSG00000002033	NonProperStrand	4	chr8	68905547	68905646	protein_coding	March1	intron	ENSMUSG00000036469	NonProperStrand	24	1	-19.7369
chr17	39845848	39845972	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	14128574	14128590	protein_coding	Fam23a	intron	ENSMUSG00000061531	ProperStrand	23	1	-3.6773
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr3	104657174	104657232	protein_coding	Capza1	intron	ENSMUSG00000070372	NonProperStrand	23	1	-7.8860
chr17	39846353	39847024	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	144690187	144690619	protein_coding	Clca3	intron	ENSMUSG00000028255	ProperStrand	8	2	-4.2675
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr15	79792671	79792687	protein_coding	Cbx7	intron	ENSMUSG00000053411	ProperStrand	55	1	-12.5655
chrX	53254060	53259010	LINE	L1Md_T	L1	chrXL1Md_T53252027	ProperStrand	4	chr4	107233593	107233619	protein_coding	Glis1	intron	ENSMUSG00000034762	NonProperStrand	44	1	-18.5642
chr16	22383255	22383315	protein_coding	Etv5	utr3	ENSMUSG00000013089	ProperStrand	260	chr6	43336248	43336298	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	1	-9.9519
chr5	124836188	124838944	protein_coding	Sbno1	intron	ENSMUSG00000038095	ProperStrand	15	chr2	129204983	129205033	pseudogene	Gm14045	.	ENSMUSG00000081888	NonProperStrand	11	3	-23.7457
chr3	35769663	35769773	LINE	L1MB8	L1	chr3L1MB835769660	ProperStrand	1	chr3	35772268	35772319	LTR	IAPEz-int	ERVK	chr3IAPEz-int35771393	ProperStrand	4	1	-inf
chr2	36664015	36664105	LINE	Lx3C	L1	chr2Lx3C36663950	ProperStrand	1	chr2	36663709	36663809	pseudogene	Gm13436	.	ENSMUSG00000083716	ProperStrand	1	1	-inf
chr15	84713248	84713338	LTR	MTEa	MaLR	chr15MTEa84713138	NonProperStrand	1	chr15	84713414	84713514	Simple_repeat	(TTC)n	Simple_repeat	chr15(TTC)n84713316	ProperStrand	1	1	-inf
chr6	56911732	56911807	LINE	L1Md_F2	L1	chr6L1Md_F256910091	ProperStrand	4	chr17	13023975	13024055	antisense	Airn	.	ENSMUSG00000078247	ProperStrand	40	1	-18.8881
chr17	39848530	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	146261325	146261350	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261316	NonProperStrand	8	1	-5.4397
chr7	28821394	28821469	LINE	Lx3C	L1	chr7Lx3C28821181	ProperStrand	34	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.0986
chr9	67491721	67491796	LINE	L1MC5	L1	chr9L1MC567491618	ProperStrand	1	chr17	39848426	39848479	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chrX	41277354	41277371	LTR	RMER20B	ERVK	chrXRMER20B41277044	ProperStrand	2	chr14	28146543	28146670	protein_coding	Arhgef3	intron	ENSMUSG00000021895	ProperStrand	16	1	-inf
chr9	99079190	99079280	LINE	L1MC	L1	chr9L1MC99079178	ProperStrand	3	chr9	99079062	99079162	SINE	PB1D10	Alu	chr9PB1D1099079081	NonProperStrand	3	3	-inf
chr11	60145949	60146070	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	27	1	-11.3038
chr6	85947533	85947624	LTR	ORR1A4-int	MaLR	chr6ORR1A4-int85947027	NonProperStrand	2	mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	1	-21.9988
chr9	123461821	123461859	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr6	40070655	40070683	protein_coding	Gm5567	intron	ENSMUSG00000057716	ProperStrand	8	1	-4.8360
chr16	8812975	8813065	SINE	B3	B2	chr16B38812920	ProperStrand	1	chr16	8813287	8813387	SINE	RSINE1	B4	chr16RSINE18813202	NonProperStrand	1	1	-inf
chr10	44985661	44985677	LTR	MT2B	ERVL	chr10MT2B44985113	ProperStrand	1	chr9	123462046	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	81501706	81501823	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int81501101	ProperStrand	4	chr6	3201485	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-8.3508
chr5	107212518	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr17	7253906	7254018	protein_coding	Gm1604b	intron	ENSMUSG00000073470	ProperStrand	137	1	-10.6147
chrX	100079729	100079799	LINE	L1Md_F2	L1	chrXL1Md_F2100078702	NonProperStrand	1	chr6	142086061	142086078	protein_coding	Slco1a6	intron	ENSMUSG00000079262	ProperStrand	3	1	-inf
chr2	18065158	18071176	protein_coding	Mllt10	intron	ENSMUSG00000026743	ProperStrand	47	chr9	13432311	13432328	protein_coding	Maml2	intron	ENSMUSG00000031925	NonProperStrand	4	1	-18.3352
chr1	179305172	179305238	LINE	Lx8	L1	chr1Lx8179305083	NonProperStrand	2	chr11	88498762	88498838	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-13.7007
chr10	77588886	77588948	LTR	RLTR1C	ERV1	chr10RLTR1C77588544	NonProperStrand	1	chr5	136181434	136189561	protein_coding	Por	intron	ENSMUSG00000005514	NonProperStrand	21	1	-inf
chr15	83412420	83412504	protein_coding-noncoding	Ttll12	utr3	ENSMUSG00000016757	ProperStrand	1	chr15	83412503	83412528	protein_coding	Ttll12	exon	ENSMUSG00000016757	ProperStrand	38	1	-inf
chr17	39847230	39847253	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	111629111	111633645	SINE	B1_Mus2	Alu	chr12B1_Mus2111633599	ProperStrand	1	1	-inf
chr11	81145218	81145321	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	161	chr9	40804804	40804839	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.4937
chr17	39846740	39847022	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	158821646	158822147	LTR	RMER19B	ERVK	chr2RMER19B158821617	NonProperStrand	4	2	-6.6967
chr8	117391286	117391388	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr13	9322229	9322252	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-3.7533
chr12	18028807	18028897	LINE	Lx4B	L1	chr12Lx4B18027470	NonProperStrand	2	chr12	18028928	18029028	LTR	ORR1D-int	MaLR	chr12ORR1D-int18028888	ProperStrand	1	1	-inf
chr17	39846976	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	86008008	86008109	SINE	B1F1	Alu	chr3B1F186007998	ProperStrand	1	1	-inf
chr9	3412968	3413017	protein_coding	Cwf19l2	intron	ENSMUSG00000025898	ProperStrand	36	chr3	86140629	86140688	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-12.1521
chr9	22011592	22011833	LTR	RLTR6-int	ERV1	chr9RLTR6-int22011405	NonProperStrand	4	chr9	22011756	22011912	protein_coding	1810064F22Rik	utr3	ENSMUSG00000090925	NonProperStrand	7	3	-inf
chr15	5399017	5399107	LINE	L1Md_F2	L1	chr15L1Md_F25398909	ProperStrand	1	chr15	5398806	5398906	LINE	Lx9	L1	chr15Lx95398790	NonProperStrand	1	1	-inf
chr17	34119678	34119808	LTR	MT2B	ERVL	chr17MT2B34119588	NonProperStrand	4	chr17	34112275	34112293	pseudogene	H2-K2	.	ENSMUSG00000067203	ProperStrand	36	1	-19.0696
chr9	123461833	123461874	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr1	65161109	65161207	protein_coding	D630023F18Rik	intron	ENSMUSG00000044816	ProperStrand	10	2	-7.4520
chr5	89735659	89735749	SINE	B4A	B4	chr5B4A89735584	NonProperStrand	1	chr5	90228207	90228307	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	1	-inf
chr11	94125147	94125204	LINE	L1MB5	L1	chr11L1MB594124922	NonProperStrand	1	chr11	94125474	94125562	SINE	B1_Mur1	Alu	chr11B1_Mur194125498	NonProperStrand	1	1	-inf
chr17	39847330	39848074	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	44869570	44998337	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	291	-inf
chr10	81416878	81416926	LTR	RMER4B	ERVK	chr10RMER4B81416600	NonProperStrand	1	chr10	81414048	81414104	Unknown	MurSatRep1	Unknown	chr10MurSatRep181412705	NonProperStrand	4	1	-inf
chrX	162790363	162790379	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.5716
chr11	78158958	78159021	protein_coding	Unc119	intron	ENSMUSG00000002058	NonProperStrand	6	chr11	78155264	78155337	protein_coding	Pigs	exon	ENSMUSG00000041958	NonProperStrand	11	1	-inf
mmu-miR-294-3p	0	22	miRNA	mmu-miR-294-3p	.	mmu-miR-294-3p	ProperStrand	6	chr11	22195307	22195422	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-15.7037
chr11	88718299	88718315	processed_transcript	4930556N13Rik	.	ENSMUSG00000092399	ProperStrand	4	chr8	117257341	117377156	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-11.7678
chr14	121305383	121305483	LINE	L1MB7	L1	chr14L1MB7121305213	ProperStrand	1	chr14	121305495	121305585	SINE	B1_Mus2	Alu	chr14B1_Mus2121305478	ProperStrand	1	1	-inf
chr9	14510199	14510222	antisense	Gm10706	.	ENSMUSG00000074508	ProperStrand	4	chr9	14501920	14502008	protein_coding	Piwil4	utr3	ENSMUSG00000036912	NonProperStrand	3	1	-inf
chr15	83149670	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.9548
chr17	39846940	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	79929431	79929487	LTR	LTRIS_Mm	ERV1	chr3LTRIS_Mm79929263	ProperStrand	1	1	-inf
chr6	124716718	124716746	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	chr5	132008999	132009092	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-5.5105
chr6	49161981	49162049	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	ProperStrand	101	chr1	59214281	59214335	protein_coding	Mpp4	exon	ENSMUSG00000079550	ProperStrand	26	1	-12.6687
chr4	139479501	139479538	lincRNA	Gm13028	intron	ENSMUSG00000087628	ProperStrand	21	chr2	79292500	79292518	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-13.9291
chr10	27362199	27362289	LINE	L1Md_T	L1	chr10L1Md_T27361330	ProperStrand	1	chr10	27362407	27362507	LINE	L1Md_T	L1	chr10L1Md_T27362276	ProperStrand	1	1	-inf
chr17	39846008	39846145	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chrX	160588991	160589007	protein_coding	Ace2	intron	ENSMUSG00000015405	NonProperStrand	17	1	-4.2555
chr10	120163555	120163651	LTR	ORR1A2	MaLR	chr10ORR1A2120163372	ProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr4	132270168	132270210	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr16	48949946	48949973	protein_coding	Dzip3	intron	ENSMUSG00000064061	ProperStrand	11	1	-14.2908
chr5	146261164	146261199	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	189657834	189657931	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	103	1	-4.0304
chr11	67972777	67972815	protein_coding	Stx8	intron	ENSMUSG00000020903	ProperStrand	40	chr15	84273518	84282783	protein_coding	1810041L15Rik	intron	ENSMUSG00000062760	NonProperStrand	118	3	-inf
chr7	92907719	92907747	LINE	L1Md_T	L1	chr7L1Md_T92905643	NonProperStrand	2	chr18	62506744	62507866	protein_coding	Htr4	intron	ENSMUSG00000026322	NonProperStrand	28	1	-21.0040
chr11	77792144	77792226	protein_coding	Sez6	utr3	ENSMUSG00000000632	ProperStrand	109	chr17	70963683	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-5.0412
chr17	39847755	39847796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	17490023	17490054	protein_coding	Aifm3	intron	ENSMUSG00000022763	ProperStrand	5	1	-3.2379
chr2	27463664	27463735	SINE	B3	B2	chr2B327463683	NonProperStrand	1	chr5	135911278	135911344	protein_coding	Hip1	intron	ENSMUSG00000039959	ProperStrand	226	1	-inf
chr9	123461802	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	22335550	22466498	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	6	-4.6626
chr9	123461965	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	140029314	140029356	protein_coding	Mettl10	intron	ENSMUSG00000030960	ProperStrand	18	1	-3.2529
chr17	79623091	79623205	LINE	L1Md_F2	L1	chr17L1Md_F279622544	ProperStrand	2	chr17	39846759	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr18	23503772	23503839	LINE	Lx7	L1	chr18Lx723503125	NonProperStrand	1	chr8	18900829	18900864	LTR	RMER15	ERVL	chr8RMER1518900791	NonProperStrand	1	1	-inf
chr17	39842996	39843049	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr11	119984622	119984697	protein_coding	Slc38a10	intron	ENSMUSG00000061306	NonProperStrand	60	1	-5.3861
chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	82671954	82672015	LTR	MT2A	ERVL	chr6MT2A82671932	ProperStrand	1	1	-inf
chr10	128817427	128817444	LINE	Lx	L1	chr10Lx128817354	NonProperStrand	1	chr18	80192417	80192551	LTR	ORR1A3-int	MaLR	chr18ORR1A3-int80191652	NonProperStrand	2	1	-inf
chr16	58210619	58210719	DNA	RCHARR1	MER1_type	chr16RCHARR158210636	ProperStrand	1	chr16	58210944	58211034	DNA	RCHARR1	MER1_type	chr16RCHARR158210872	ProperStrand	1	1	-inf
chr13	62693498	62693564	LINE	Lx3_Mus	L1	chr13Lx3_Mus62693400	NonProperStrand	1	chr6	37188681	37188772	protein_coding	Dgki	intron	ENSMUSG00000038665	ProperStrand	44	1	-inf
chr11	55482757	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr4	25615417	25615479	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-12.9016
chr17	39848478	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr9	97355593	97355612	protein_coding	Clstn2	intron	ENSMUSG00000032452	NonProperStrand	12	1	-4.6162
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr19	4195110	4195140	protein_coding	Ppp1ca	utr3	ENSMUSG00000040385	ProperStrand	19	1	-9.1236
chr1	155177973	155178018	protein_coding	Lamc1	intron	ENSMUSG00000026478	NonProperStrand	26	chr4	137035282	137035361	protein_coding	Hspg2	intron	ENSMUSG00000028763	NonProperStrand	25	1	-15.5020
chr3	149052643	149052690	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n149052621	ProperStrand	1	chr17	70963679	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr17	67764228	67764318	Low_complexity	CT-rich	Low_complexity	chr17CT-rich67764229	ProperStrand	1	chr17	67764327	67764427	SINE	B2_Mm2	B2	chr17B2_Mm267764321	NonProperStrand	1	1	-inf
chr17	39847000	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	36795396	36795412	SINE	B3	B2	chr1B336795292	ProperStrand	2	2	-inf
chr16	25586758	25586858	DNA	MER5A	MER1_type	chr16MER5A25586733	ProperStrand	1	chr16	25587043	25587133	LINE	Lx2B	L1	chr16Lx2B25586877	ProperStrand	1	1	-inf
chr3	89209363	89209413	protein_coding	Flad1	intron	ENSMUSG00000042642	ProperStrand	8	chr9	78479018	78479067	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-11.6342
chr7	106968426	106968445	protein_coding	Neu3	intron	ENSMUSG00000035239	ProperStrand	1	chr2	31194690	31194755	protein_coding	Hmcn2	intron	ENSMUSG00000055632	ProperStrand	328	1	-inf
chr1	124358758	124358858	LINE	Lx	L1	chr1Lx124358722	ProperStrand	1	chr1	124359050	124359140	LINE	Lx	L1	chr1Lx124358873	NonProperStrand	1	1	-inf
chr17	88045759	88045827	protein_coding	Epcam	intron	ENSMUSG00000045394	NonProperStrand	8	chr5	17776749	17776795	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-14.2452
chr17	39847174	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	36478807	36478824	protein_coding	Snx31	intron	ENSMUSG00000013611	NonProperStrand	6	1	-3.9545
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr15	82283112	82283138	protein_coding	Cyp2d9	intron	ENSMUSG00000068086	ProperStrand	3	1	-12.9170
chr11	95716511	95716576	LINE	L3	CR1	chr11L395716400	NonProperStrand	1	chr2	32279124	32280741	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	1	-inf
chr15	89211879	89211914	LINE	L1M2	L1	chr15L1M289211852	NonProperStrand	1	chr15	89211668	89211788	SINE	B3	B2	chr15B389211636	NonProperStrand	1	1	-inf
chr17	67717188	67717224	LTR	MER89	ERV1	chr17MER8967717113	ProperStrand	1	chr17	67697334	67716707	protein_coding	Ptprm	intron	ENSMUSG00000033278	NonProperStrand	29	1	-inf
chr17	39848162	39848250	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	23111376	23111428	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	16	1	-3.7913
chr9	60805006	60805106	DNA	Zaphod	Tip100	chr9Zaphod60804997	ProperStrand	1	chr9	60804905	60804995	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n60804930	ProperStrand	1	1	-inf
chr17	39847183	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	72459033	72459049	protein_coding-noncoding	Ube2g1	exon	ENSMUSG00000020794	ProperStrand	1	1	-inf
chr11	109012080	109012100	LTR	RMER17B	ERVK	chr11RMER17B109012078	NonProperStrand	4	chr8	87477012	87477088	protein_coding	Rtbdn	intron	ENSMUSG00000048617	ProperStrand	46	1	-18.3756
chr19	61174825	61174915	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	NonProperStrand	3	chr6	136505971	136506071	protein_coding	Atf7ip	intron	ENSMUSG00000030213	NonProperStrand	2	1	-20.2824
chr13	97190561	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr16	10549387	10622490	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	3	-7.1696
chrX	153500030	153500097	LINE	L1_Mur1	L1	chrXL1_Mur1153500015	NonProperStrand	2	chr17	39847246	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39848669	39848755	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr19	21631105	21631181	protein_coding	Gm3443	intron	ENSMUSG00000079382	NonProperStrand	2	1	-8.7208
chr9	44410008	44410033	SINE	B1_Mur1	Alu	chr9B1_Mur144409992	NonProperStrand	2	chr17	10425212	10425307	protein_coding	Qk	intron	ENSMUSG00000062078	NonProperStrand	42	1	-21.2163
chr9	40804807	40804837	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr2	92298405	92298479	protein_coding	Slc35c1	intron	ENSMUSG00000049922	NonProperStrand	2	1	-14.8957
chr7	141451068	141451282	LINE	Lx2	L1	chr7Lx2141451081	ProperStrand	221	chr1	95365819	95365842	protein_coding	Hdlbp	intron	ENSMUSG00000034088	ProperStrand	2	1	-16.9032
chr10	60758217	60758307	LTR	MTD	MaLR	chr10MTD60758100	ProperStrand	1	chr10	60757689	60757789	SINE	B1_Mur2	Alu	chr10B1_Mur260757627	NonProperStrand	1	1	-inf
chr1	152064791	152064813	LINE	Lx5	L1	chr1Lx5152063871	NonProperStrand	2	chr1	152063596	152063641	LTR	RLTR22_Mur	ERVK	chr1RLTR22_Mur152063574	ProperStrand	2	1	-19.8939
chr2	139736426	139736516	protein_coding	Tasp1	intron	ENSMUSG00000039033	ProperStrand	40	chr2	140237447	140237547	protein_coding	Macrod2	intron	ENSMUSG00000068205	NonProperStrand	53	1	-13.0913
chr17	74360117	74360218	LINE	L1Md_F2	L1	chr17L1Md_F274359599	NonProperStrand	4	chr17	39847439	39847504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-6.7714
chr11	84306640	84306692	protein_coding	Aatf	intron	ENSMUSG00000018697	NonProperStrand	44	chr14	79861041	79861118	protein_coding	Wbp4	utr3	ENSMUSG00000022023	NonProperStrand	30	1	-14.0524
chr16	20660066	20660369	protein_coding	Psmd2	exon	ENSMUSG00000006998	ProperStrand	34	chr8	95486111	95486194	protein_coding	Slc6a2	intron	ENSMUSG00000055368	NonProperStrand	18	1	-15.6229
chr17	39847899	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	35958745	35958822	protein_coding	Ier3	exon	ENSMUSG00000003541	NonProperStrand	1	1	-inf
chr13	21907108	21907193	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr12	88366248	88366266	protein_coding	Tmem63c	intron	ENSMUSG00000034145	ProperStrand	23	1	-16.0998
chr17	39846952	39846993	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	120796062	120796169	SINE	B1_Mm	Alu	chr11B1_Mm120796020	NonProperStrand	1	1	-inf
chr13	62414344	62414434	Unknown	MurSatRep1	Unknown	chr13MurSatRep162414195	ProperStrand	1	chr2	75928133	75928233	protein_coding	Pde11a	intron	ENSMUSG00000075270	NonProperStrand	79	1	-inf
chr5	146389544	146389567	LINE	Lx8	L1	chr5Lx8146389316	ProperStrand	1	chr5	146412799	146412928	LTR	RLTR1B-int	ERV1	chr5RLTR1B-int146412778	ProperStrand	2	1	-inf
mmu-miR-1895	5	22	miRNA	mmu-miR-1895	.	mmu-miR-1895	ProperStrand	2	chr19	40310099	40310194	protein_coding	Pdlim1	intron	ENSMUSG00000055044	ProperStrand	44	1	-19.8653
chr7	100844573	100844673	LINE	Lx	L1	chr7Lx100844450	NonProperStrand	1	chr17	39846650	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	16514151	16514235	SINE	B1_Mus1	Alu	chr7B1_Mus116514092	ProperStrand	1	chr9	123461922	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	5379297	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr9	14280796	14280864	protein_coding	Kdm4d	intron	ENSMUSG00000053914	NonProperStrand	7	1	-8.8922
chrX	48176592	48176615	SINE	ID_B1	B4	chrXID_B148176595	NonProperStrand	1	chr4	98430525	98430640	protein_coding	Kank4	intron	ENSMUSG00000035407	NonProperStrand	19	1	-inf
chrX	142792911	142793001	LINE	L1Md_T	L1	chrXL1Md_T142788012	ProperStrand	1	chrX	142793030	142793130	LINE	L1Md_T	L1	chrXL1Md_T142793009	ProperStrand	1	1	-inf
chr3	101082295	101082332	protein_coding	Cd2	intron	ENSMUSG00000027863	ProperStrand	9	chr2	75909676	75925947	protein_coding	Pde11a	intron	ENSMUSG00000075270	NonProperStrand	79	1	-15.3686
chr17	39846453	39846474	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	110279266	110279284	protein_coding	Begain	intron	ENSMUSG00000040867	NonProperStrand	4	1	-3.6552
chr3	37328895	37329011	protein_coding	Spata5	intron	ENSMUSG00000027722	ProperStrand	28	chr18	88871285	88871313	protein_coding	Socs6	intron	ENSMUSG00000056153	ProperStrand	33	1	-14.7854
chr3	88321079	88321099	SINE	ID_B1	B4	chr3ID_B188320923	ProperStrand	3	chr9	70134343	70134399	protein_coding	Myo1e	intron	ENSMUSG00000032220	NonProperStrand	28	1	-19.7481
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr19	5046420	5046677	protein_coding	Brms1	exon	ENSMUSG00000080268	ProperStrand	5	1	-14.9779
chr12	17278616	17278864	protein_coding	Pdia6	intron	ENSMUSG00000020571	ProperStrand	22	chr15	55525088	55525111	protein_coding	Sntb1	intron	ENSMUSG00000060429	NonProperStrand	31	1	-15.4125
chr1	36337054	36337081	LTR	MTB	MaLR	chr1MTB36336693	NonProperStrand	3	chr11	88559257	88559379	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-12.6030
chr10	81180570	81180845	SINE	B2_Mm1t	B2	chr10B2_Mm1t81180542	ProperStrand	21	chr10	81180816	81180951	SINE	B3	B2	chr10B381180806	NonProperStrand	81	7	-19.9583
chr15	77191696	77191786	LTR	MER54A	ERVL	chr15MER54A77191704	NonProperStrand	1	chr15	77191628	77191728	SINE	B2_Mm2	B2	chr15B2_Mm277191514	ProperStrand	1	1	-inf
chr1	166160634	166160719	LINE	L1Md_F2	L1	chr1L1Md_F2166159749	ProperStrand	3	chr17	39846433	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr2	84615185	84615263	protein_coding-noncoding	Serping1	utr3	ENSMUSG00000023224	ProperStrand	1	chr19	6058500	6058568	protein_coding	Fau	exon	ENSMUSG00000038274	ProperStrand	58	1	-inf
chr11	109011651	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	90937822	90937915	protein_coding	Synj1	utr3	ENSMUSG00000022973	ProperStrand	21	1	-8.2014
chr8	93277097	93277187	LINE	L1_Mur3	L1	chr8L1_Mur393277035	NonProperStrand	1	chr8	93277444	93277544	LINE	L1_Mur3	L1	chr8L1_Mur393277445	NonProperStrand	1	1	-inf
chr11	88674099	88674199	LINE	L1ME3	L1	chr11L1ME388673977	NonProperStrand	3	chr11	88674194	88674284	Simple_repeat	(TA)n	Simple_repeat	chr11(TA)n88674212	NonProperStrand	3	3	-inf
chr17	39847216	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	123508520	123509800	SINE	B2_Mm2	B2	chr4B2_Mm2123509369	ProperStrand	2	1	-6.5615
chr14	63239046	63239080	SINE	B4A	B4	chr14B4A63238829	NonProperStrand	1	chr9	40803829	40803863	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr1	98224860	98224950	LINE	L1Md_A	L1	chr1L1Md_A98224692	ProperStrand	1	chr1	98224338	98224438	LINE	L1_Mus3	L1	chr1L1_Mus398223407	ProperStrand	1	1	-inf
chr6	33895368	33895390	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr6	4971730	4971762	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-3.9874
chr2	111450906	111450926	LTR	RMER10A	ERVL	chr2RMER10A111450873	NonProperStrand	1	chr11	88154040	88154117	protein_coding	Msi2	utr3	ENSMUSG00000069769	NonProperStrand	17	1	-inf
chr17	39847636	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	25471902	25471928	LTR	RMER21A	ERV1	chr7RMER21A25471363	NonProperStrand	1	1	-inf
chr8	33856772	33856813	LINE	L1Md_A	L1	chr8L1Md_A33850474	ProperStrand	25	chr4	62360927	62361018	protein_coding	Rgs3	intron	ENSMUSG00000059810	ProperStrand	28	1	-15.3497
chr11	51606553	51606733	LTR	RLTR14-int	ERV1	chr11RLTR14-int51606650	NonProperStrand	3	chr17	39847080	39847170	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-9.8423
chr3	8548647	8548732	protein_coding	Stmn2	intron	ENSMUSG00000027500	ProperStrand	66	chr16	16991390	16991453	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	1	-11.0378
chr11	102278550	102278650	LTR	MTC	MaLR	chr11MTC102278493	NonProperStrand	2	chr10	83008664	83008755	protein_coding	A230046K03Rik	intron	ENSMUSG00000034560	ProperStrand	68	2	-inf
chr17	39848598	39848720	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	154350872	154352197	protein_coding	Cbfa2t2	intron	ENSMUSG00000038533	NonProperStrand	10	1	-4.9823
chr13	67411191	67411281	LTR	ORR1B1-int	MaLR	chr13ORR1B1-int67411155	NonProperStrand	1	chr13	67411372	67411470	LTR	ORR1B1-int	MaLR	chr13ORR1B1-int67411283	NonProperStrand	1	1	-inf
chr1	122357188	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr1	36939434	36939523	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	1	-6.3095
chr9	118674951	118674991	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr11	20531428	20531501	protein_coding	Sertad2	intron	ENSMUSG00000049800	NonProperStrand	16	1	-8.6262
chr7	124819495	124819595	Simple_repeat	(TATG)n	Simple_repeat	chr7(TATG)n124819519	NonProperStrand	1	chr7	124819629	124819719	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n124819600	NonProperStrand	1	1	-inf
chr10	120962051	120962113	LINE	L1MB7	L1	chr10L1MB7120961788	ProperStrand	1	chr10	120961528	120961601	SINE	B1_Mus1	Alu	chr10B1_Mus1120961521	ProperStrand	1	1	-inf
chr4	43492783	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr16	11143902	11144010	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	1	-4.2244
chr11	115123814	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	chr1	78450870	78450927	protein_coding	Farsb	intron	ENSMUSG00000026245	ProperStrand	84	1	-13.2027
chr17	39846813	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	119789324	119789427	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n119789316	ProperStrand	2	2	-inf
chr16	4609587	4609639	protein_coding	Glis2	intron	ENSMUSG00000014303	ProperStrand	79	chr8	106761309	106761328	protein_coding	Tk2	intron	ENSMUSG00000035824	ProperStrand	8	1	-15.6204
chr2	180312043	180312133	SINE	B3	B2	chr2B3180311940	ProperStrand	1	chr2	180311865	180311965	SINE	B4	B4	chr2B4180311762	ProperStrand	1	1	-inf
chr17	39847659	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	27128323	27128371	LTR	ORR1B2	MaLR	chr8ORR1B227128283	NonProperStrand	1	1	-inf
chr9	123462135	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	8286524	8286636	protein_coding	Gm16039	intron	ENSMUSG00000089862	ProperStrand	20	1	-3.0591
chr3	144699220	144699267	LTR	RLTR21	ERVK	chr3RLTR21144698491	NonProperStrand	1	chr15	76906187	76906224	SINE	B1_Mur1	Alu	chr15B1_Mur176906120	ProperStrand	10	1	-inf
chr19	36854909	36857866	Other	RMER1A	Other	chr19RMER1A36856955	NonProperStrand	2	chr19	36849361	36851505	SINE	MIR	MIR	chr19MIR36849349	NonProperStrand	1	1	-inf
chr11	104505433	104505542	protein_coding	Itgb3	intron	ENSMUSG00000020689	NonProperStrand	3	chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr6	3201470	3201562	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	57182451	57182504	protein_coding	Tbc1d23	intron	ENSMUSG00000022749	ProperStrand	21	1	-4.8667
chr17	39848623	39848717	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr9	61170279	61170297	SINE	MIRb	MIR	chr9MIRb61170107	ProperStrand	3	1	-7.6307
chr15	99865478	99865541	LTR	MLT1G	MaLR	chr15MLT1G99865320	ProperStrand	1	chr13	28649158	28649192	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	1	-inf
chr5	51151786	51151876	LINE	Lx9	L1	chr5Lx951151681	NonProperStrand	1	chr5	51151912	51152012	LINE	Lx9	L1	chr5Lx951151848	ProperStrand	1	1	-inf
chr13	8808197	8808238	protein_coding	Wdr37	intron	ENSMUSG00000021147	ProperStrand	42	chr8	80829923	80829952	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-7.9991
chr5	123779496	123779566	SINE	B1_Mur3	Alu	chr5B1_Mur3123779464	NonProperStrand	1	chr5	123779672	123779702	SINE	ID_B1	B4	chr5ID_B1123779639	NonProperStrand	1	1	-inf
chr5	33534996	33535088	LINE	L1MC	L1	chr5L1MC33534856	NonProperStrand	15	chr13	91805751	91805851	protein_coding	Ssbp2	intron	ENSMUSG00000003992	NonProperStrand	14	1	-17.7899
chr1	95674718	95674808	protein_coding-noncoding	Atg4b	utr5	ENSMUSG00000026280	ProperStrand	1	chr1	95674875	95674975	protein_coding	Atg4b	intron	ENSMUSG00000026280	ProperStrand	2	1	-inf
chr9	123461856	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr7	127403431	127421823	protein_coding	Abca14	exon	ENSMUSG00000062017	NonProperStrand	27	2	-4.4791
chr1	173096585	173096675	LTR	MurERV4-int	ERVK	chr1MurERV4-int173096591	NonProperStrand	1	chr1	173096729	173096830	SINE	B2_Mm2	B2	chr1B2_Mm2173096667	NonProperStrand	1	1	-inf
chr11	109011823	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	45015225	45015349	protein_coding	Zbtb5	intron	ENSMUSG00000049657	NonProperStrand	7	1	-10.4933
chr6	133591434	133591534	LINE	L1_Mur2	L1	chr6L1_Mur2133591356	ProperStrand	1	chr6	133591133	133591223	LINE	Lx2	L1	chr6Lx2133589643	ProperStrand	1	1	-inf
chr15	5745242	5745332	LINE	L1Md_A	L1	chr15L1Md_A5745146	ProperStrand	1	chr15	5745488	5745588	LINE	L1Md_A	L1	chr15L1Md_A5745376	ProperStrand	1	1	-inf
chr6	122731441	122731503	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr5	31060185	31060508	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	1	-6.7467
chr4	63982278	63982368	LINE	Lx4B	L1	chr4Lx4B63981978	NonProperStrand	2	chr4	63981815	63981916	SINE	B1_Mm	Alu	chr4B1_Mm63981832	NonProperStrand	2	2	-inf
chr12	113012188	113012255	protein_coding	Klc1	intron	ENSMUSG00000021288	NonProperStrand	9	chr4	141306871	141306948	protein_coding	Agmat	intron	ENSMUSG00000040706	ProperStrand	58	1	-15.9920
chr17	39848140	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	11263388	11263486	protein_coding	Esrp1	intron	ENSMUSG00000040728	ProperStrand	8	1	-5.1688
chr17	39847228	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	90761441	90761490	protein_coding	Papd5	intron	ENSMUSG00000036779	NonProperStrand	1	1	-inf
chr10	30570458	30570548	LTR	ORR1E	MaLR	chr10ORR1E30570335	NonProperStrand	1	chr10	30570081	30570181	SINE	B3	B2	chr10B330570069	ProperStrand	1	1	-inf
chr18	63078741	63078757	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr5	148518490	148518578	protein_coding	Flt1	intron	ENSMUSG00000029648	ProperStrand	93	1	-12.4765
chr17	39847889	39847979	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	137805310	137805410	LTR	MTE-int	MaLR	chr6MTE-int137805267	NonProperStrand	2	2	-inf
chr17	39847160	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	30308258	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	5	-3.8378
chr13	59458964	59459054	LTR	RMER17C	ERVK	chr13RMER17C59458984	NonProperStrand	1	chr13	59458745	59458845	LTR	RMER4B	ERVK	chr13RMER4B59458358	ProperStrand	1	1	-inf
chr8	105524780	105524880	LINE	L1MCa	L1	chr8L1MCa105524744	NonProperStrand	4	chr8	105565802	105565892	LINE	Lx8	L1	chr8Lx8105565719	NonProperStrand	2	1	-20.9262
chr14	63505024	63505095	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	chr12	76277091	76277152	protein_coding	Kcnh5	intron	ENSMUSG00000034402	NonProperStrand	68	1	-9.9998
chr7	63470365	63470502	protein_coding	Herc2	intron	ENSMUSG00000030451	ProperStrand	5	chr17	28837070	28837088	protein_coding	Mapk14	intron	ENSMUSG00000053436	NonProperStrand	2	1	-23.2669
chr16	55966427	55971338	protein_coding-noncoding	Rpl24	utr5	ENSMUSG00000022601	ProperStrand	14	chr16	55966587	55971410	protein_coding	Rpl24	intron	ENSMUSG00000022601	ProperStrand	72	12	-20.8999
chr8	27240530	27240602	protein_coding	Rnf170	intron	ENSMUSG00000013878	NonProperStrand	24	chr5	104014998	104015080	protein_coding	Ptpn13	intron	ENSMUSG00000034573	NonProperStrand	46	2	-inf
chr9	19423979	19424000	LINE	Lx7	L1	chr9Lx719422942	NonProperStrand	1	chr17	39847028	39847133	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	30555962	30555980	LINE	L1_Rod	L1	chr19L1_Rod30555817	NonProperStrand	1	chr5	146757462	146757577	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int146755474	ProperStrand	3	1	-inf
chr1	63582503	63582532	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chrX	140956614	140956633	protein_coding	Trpc5	intron	ENSMUSG00000041710	ProperStrand	3	1	-14.4251
chr15	99411034	99411153	protein_coding	Aqp2	intron	ENSMUSG00000023013	ProperStrand	1	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr10	80076795	80076935	protein_coding	Scamp4	intron	ENSMUSG00000078441	NonProperStrand	14	1	-10.8019
chr13	29321171	29321189	protein_coding	Cdkal1	intron	ENSMUSG00000006191	NonProperStrand	21	chr2	32961826	32962609	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-11.0261
chr5	146261022	146261101	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	132544693	132544718	protein_coding	Fgr	intron	ENSMUSG00000028874	ProperStrand	28	1	-6.5650
chr4	150474174	150474197	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr16	35981616	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-6.1113
chrX	108861010	108861066	LINE	L1Md_F3	L1	chrXL1Md_F3108860910	NonProperStrand	1	chr17	39846665	39846734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	30467505	30467592	LINE	L1_Mur2	L1	chr9L1_Mur230464465	ProperStrand	1	chr1	45374507	45374523	protein_coding	Col3a1	intron	ENSMUSG00000026043	NonProperStrand	5	1	-inf
chr5	151644700	151644843	SINE	B2_Mm1t	B2	chr5B2_Mm1t151644751	ProperStrand	1	chr5	151643734	151644661	SINE	B2_Mm2	B2	chr5B2_Mm2151644599	ProperStrand	2	1	-inf
chr7	81463868	81464177	protein_coding	Slco3a1	intron	ENSMUSG00000025790	ProperStrand	17	chr11	119038693	119038709	protein_coding	Tbc1d16	intron	ENSMUSG00000039976	ProperStrand	16	1	-17.2697
chr11	8519170	8519506	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr8	25040329	25040345	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-5.1660
chr9	78204334	78205913	LTR	ORR1A4	MaLR	chr9ORR1A478204206	ProperStrand	3	chr6	33897613	33897674	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-13.1632
chr2	179772149	179772169	protein_coding	Psma7	exon	ENSMUSG00000027566	NonProperStrand	6	chr5	66527519	66527642	protein_coding	Rbm47	intron	ENSMUSG00000070780	ProperStrand	141	1	-15.0805
chr7	115569982	115570004	LINE	L1Md_T	L1	chr7L1Md_T115569688	NonProperStrand	1	chr17	39847230	39847362	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr15	84822622	84822712	SINE	B2_Mm2	B2	chr15B2_Mm284822637	ProperStrand	1	chr15	84822447	84822547	SINE	B4A	B4	chr15B4A84822427	ProperStrand	1	1	-inf
chr10	74806313	74806413	LTR	MTC	MaLR	chr10MTC74806141	NonProperStrand	1	chr6	145011520	145011610	protein_coding	Bcat1	intron	ENSMUSG00000030268	NonProperStrand	3	1	-inf
chr9	62449419	62449519	LINE	L1Md_T	L1	chr9L1Md_T62447137	ProperStrand	1	chr15	37043030	37043120	Simple_repeat	(TTTC)n	Simple_repeat	chr15(TTTC)n37042986	NonProperStrand	1	1	-inf
chr2	73746873	73746973	protein_coding-noncoding	Atp5g3	utr3	ENSMUSG00000018770	NonProperStrand	1	chr2	73746574	73746664	protein_coding	Atp5g3	utr3	ENSMUSG00000018770	NonProperStrand	1	1	-inf
chr3	88355822	88355911	protein_coding	Lamtor2	intron	ENSMUSG00000028062	NonProperStrand	2	chr2	91373029	91373076	protein_coding	Ckap5	intron	ENSMUSG00000040549	NonProperStrand	14	1	-19.5799
chr9	32129667	32151979	Low_complexity	C-rich	Low_complexity	chr9C-rich32151934	ProperStrand	2	chr9	32032686	32129587	protein_coding	Arhgap32	intron	ENSMUSG00000041444	ProperStrand	30	2	-inf
chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	chr8	123432936	123433052	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-2.9976
chr7	12930794	12930870	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr5	115489455	115490374	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	24	-inf
chr9	48237415	48237505	LINE	Lx5	L1	chr9Lx548237330	NonProperStrand	4	chr9	48478720	48478820	protein_coding	Zbtb16	intron	ENSMUSG00000066687	ProperStrand	16	1	-inf
chr10	3866673	3866762	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n3866501	ProperStrand	1	chr13	100739116	100739141	protein_coding	Mccc2	intron	ENSMUSG00000021646	NonProperStrand	5	1	-inf
chr12	83567885	83567927	LTR	MTC-int	MaLR	chr12MTC-int83567656	ProperStrand	1	chr2	5351969	5352041	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr1	58528225	58528264	protein_coding	Orc2	intron	ENSMUSG00000026037	ProperStrand	21	chr1	189126292	189126310	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-15.1371
chr4	136051656	136052575	protein_coding	Luzp1	intron	ENSMUSG00000001089	NonProperStrand	42	chr8	123928002	123928021	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-6.9205
chr11	109012082	109012101	LTR	RMER17B	ERVK	chr11RMER17B109012078	NonProperStrand	4	chr14	64753916	64754052	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	1	-15.7796
chr1	116675518	116675618	SINE	B4A	B4	chr1B4A116675533	NonProperStrand	1	chr1	116675271	116675361	Simple_repeat	(TTC)n	Simple_repeat	chr1(TTC)n116675198	ProperStrand	1	1	-inf
chr10	93580715	93580831	protein_coding	Fgd6	intron	ENSMUSG00000020021	NonProperStrand	12	chr11	116238064	116238081	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	30	1	-16.7072
chr12	111050752	111050848	LINE	Lx7	L1	chr12Lx7111050430	NonProperStrand	3	chr12	111050998	111051052	LTR	RLTR13D4	ERVK	chr12RLTR13D4111051006	NonProperStrand	1	1	-inf
chr11	88671201	88671291	Low_complexity	GA-rich	Low_complexity	chr11GA-rich88671218	NonProperStrand	1	chr11	88671101	88671201	SINE	PB1D9	Alu	chr11PB1D988671079	NonProperStrand	4	1	-inf
chr17	39846750	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	83630212	83630233	protein_coding	Mpped1	intron	ENSMUSG00000041708	ProperStrand	3	1	-4.3017
chr17	39848208	39848298	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	36322041	36322061	LTR	ORR1E	MaLR	chr8ORR1E36321954	ProperStrand	1	1	-inf
chr1	36169079	36169179	LTR	MTB-int	MaLR	chr1MTB-int36168237	NonProperStrand	6	chr9	123461869	123461959	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr7	13025688	13025741	SINE	PB1D10	Alu	chr7PB1D1013025647	NonProperStrand	14	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.9012
chr9	123461884	123461916	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr12	22712186	22712279	pseudogene	Gm20472	.	ENSMUSG00000073166	NonProperStrand	6	1	-5.4370
chr11	107620142	107620182	protein_coding	Cacng4	intron	ENSMUSG00000020723	NonProperStrand	72	chr18	74778534	74778650	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	68	1	-11.4037
chr16	28860757	28860847	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	chr18	6772178	6772278	protein_coding	Rab18	intron	ENSMUSG00000073639	ProperStrand	14	1	-13.5793
chr10	52381617	52381709	LINE	Lx3_Mus	L1	chr10Lx3_Mus52381480	ProperStrand	1	chr10	52358822	52358922	LINE	Lx7	L1	chr10Lx752357928	ProperStrand	1	1	-inf
chr14	30572324	30573420	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n30572455	ProperStrand	3	chr14	30573382	30573482	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n30573333	ProperStrand	7	1	-25.2264
chr12	110692810	110693026	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	chr19	9017543	9017618	protein_coding	Mta2	intron	ENSMUSG00000071646	ProperStrand	23	1	-11.1346
chr14	78633886	78633986	DNA	URR1B	MER1_type	chr14URR1B78633770	ProperStrand	1	chr14	78633532	78633622	LINE	L1MA8	L1	chr14L1MA878633531	ProperStrand	1	1	-inf
chr11	48800864	48800933	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr17	24179535	24179594	protein_coding	Prss27	intron	ENSMUSG00000050762	NonProperStrand	15	2	-19.1003
chr6	60824601	60824701	LINE	L1Md_F2	L1	chr6L1Md_F260824503	NonProperStrand	1	chr6	60824413	60824503	LTR	RMER17B	ERVK	chr6RMER17B60824184	ProperStrand	1	1	-inf
chr15	92865561	92865651	LTR	MTEa-int	MaLR	chr15MTEa-int92865484	ProperStrand	1	chr15	92865205	92865305	LTR	MTEa	MaLR	chr15MTEa92865118	ProperStrand	1	1	-inf
chr6	112662328	112662380	SINE	B1_Mus1	Alu	chr6B1_Mus1112662323	ProperStrand	1	chr13	44869626	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr5	120690101	120690118	SINE	MIRb	MIR	chr5MIRb120690030	NonProperStrand	1	1	-inf
chr11	115123811	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	chr5	81594860	81594882	protein_coding	Lphn3	intron	ENSMUSG00000037605	ProperStrand	27	1	-15.5023
chr10	85561537	85561553	antisense	4930486F22Rik	.	ENSMUSG00000085435	ProperStrand	13	chr8	24970733	24970749	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-12.3097
chr10	70166917	70166960	LTR	MTC-int	MaLR	chr10MTC-int70166882	ProperStrand	4	chr10	70166687	70166775	LTR	MTC	MaLR	chr10MTC70166485	ProperStrand	2	1	-20.9262
chr10	4110926	4111026	LINE	L1Md_F2	L1	chr10L1Md_F24108646	ProperStrand	6	chr16	35794554	35794644	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	1	-14.4753
chr17	39846659	39846716	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	93199971	93200019	Simple_repeat	(GGGA)n	Simple_repeat	chr2(GGGA)n93199940	ProperStrand	2	1	-5.3533
chr1	168397282	168397413	LINE	Lx5	L1	chr1Lx5168397320	ProperStrand	2	chr7	49399125	49399143	protein_coding	Vmn2r60	intron	ENSMUSG00000090619	NonProperStrand	4	1	-22.1285
chr11	109011745	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	19883803	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	4	-10.6684
chr8	88647865	88647906	LINE	L1_Mus3	L1	chr8L1_Mus388642834	NonProperStrand	1	chr17	39847491	39847581	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	72346930	72346986	protein_coding	Lpar2	intron	ENSMUSG00000031861	NonProperStrand	35	chr13	97190560	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.1809
chr7	80186925	80186978	LINE	Lx	L1	chr7Lx80186743	NonProperStrand	2	chr17	39846429	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	68902321	68902361	protein_coding-noncoding	Vamp2	utr5	ENSMUSG00000020894	ProperStrand	20	chr4	32619546	32619590	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	1	-12.8765
chr17	39847918	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	83670306	83670776	LTR	MuRRS4-int	ERV1	chr8MuRRS4-int83670048	NonProperStrand	4	2	-6.7714
chr16	4497143	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	chr17	33352546	33352641	protein_coding	Gm4461	exon	ENSMUSG00000079307	ProperStrand	1	1	-inf
chr10	100460980	100460996	LTR	MLT2E	ERVL	chr10MLT2E100460838	NonProperStrand	2	chr9	72749066	72749146	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-16.1091
chr17	39843969	39844016	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr11	4812698	4812755	protein_coding	Thoc5	intron	ENSMUSG00000034274	NonProperStrand	16	1	-6.5781
chr11	53286881	53286959	LTR	MTE2b	MaLR	chr11MTE2b53286899	ProperStrand	4	chr2	59752607	59752661	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	1	-15.7796
chr17	39846760	39846813	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	66566116	66566208	lincRNA	Gm16885	intron	ENSMUSG00000086102	NonProperStrand	4	1	-3.6552
chr1	37327788	37327898	LTR	MT2A	ERVL	chr1MT2A37327812	ProperStrand	2	chr16	15554309	15554355	protein_coding	Ube2v2	utr3	ENSMUSG00000022674	ProperStrand	16	2	-inf
chr3	12648512	12648612	LINE	L1Md_F2	L1	chr3L1Md_F212645570	NonProperStrand	1	chr10	115539305	115539395	protein_coding	Ptprr	intron	ENSMUSG00000020151	NonProperStrand	6	1	-inf
chr1	191827241	191827331	LINE	L1Md_F2	L1	chr1L1Md_F2191826521	NonProperStrand	5	chr1	191827372	191827472	LINE	L1Md_F2	L1	chr1L1Md_F2191826521	ProperStrand	3	3	-inf
chr11	35935720	35935785	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	chr10	114143559	114143639	protein_coding	Trhde	intron	ENSMUSG00000050663	NonProperStrand	6	2	-inf
chr19	5799741	5799799	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr5	121967315	121967363	protein_coding	Tmem116	intron	ENSMUSG00000029452	NonProperStrand	41	1	-5.1745
chrX	102187450	102187885	LINE	L1Md_F2	L1	chrXL1Md_F2102187802	NonProperStrand	10	chr13	113867444	113867499	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	1	-13.3569
chr2	156742081	156742175	SINE	B3	B2	chr2B3156742008	NonProperStrand	1	chr2	156739400	156739456	pseudogene	Gm14278	.	ENSMUSG00000080880	NonProperStrand	97	1	-inf
chr5	110235196	110235296	LINE	Lx3_Mus	L1	chr5Lx3_Mus110235091	NonProperStrand	3	chr5	110234931	110235021	LTR	LTRIS2	ERV1	chr5LTRIS2110234742	NonProperStrand	1	1	-inf
chr11	83768421	83768498	protein_coding	Ddx52	intron	ENSMUSG00000020677	ProperStrand	11	chr15	73146660	73146716	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	1	-10.8818
chr16	4716271	4716371	protein_coding-noncoding	Nmral1	utr3	ENSMUSG00000063445	ProperStrand	2	chr16	4716399	4716489	protein_coding	Nmral1	exon	ENSMUSG00000063445	ProperStrand	7	2	-inf
chr2	87870661	87870761	LINE	L1Md_F2	L1	chr2L1Md_F287869218	ProperStrand	1	chr2	87870789	87870879	LINE	L1Md_F2	L1	chr2L1Md_F287870753	NonProperStrand	1	1	-inf
chr15	80082858	80082920	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr4	83466730	83466782	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-5.8594
chr15	69076020	69076103	LTR	MTEa	MaLR	chr15MTEa69075892	NonProperStrand	1	chr11	69668849	69668897	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-inf
chr17	12915769	12915951	protein_coding	Igf2r	intron	ENSMUSG00000023830	ProperStrand	54	chr8	84160688	84160737	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-10.2915
chrX	106187286	106192008	Low_complexity	CT-rich	Low_complexity	chrXCT-rich106187275	ProperStrand	2	chr17	31769267	31769306	protein_coding	Cbs	intron	ENSMUSG00000024039	ProperStrand	1	1	-inf
chr1	161035399	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr11	78181169	78181419	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	1	-11.5073
chr2	30071315	30071334	LTR	MTE-int	MaLR	chr2MTE-int30071041	NonProperStrand	9	chr17	39843485	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-6.2068
chr2	130528984	130529084	SINE	B4	B4	chr2B4130529002	NonProperStrand	6	chr2	130528889	130528979	SINE	ID_B1	B4	chr2ID_B1130528826	NonProperStrand	6	6	-inf
chr17	31648085	31648204	protein_coding	Wdr4	intron	ENSMUSG00000024037	ProperStrand	95	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.6279
chr1	71576529	71576615	DNA	RCHARR1	MER1_type	chr1RCHARR171575780	NonProperStrand	1	chr17	39846462	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	118174366	118174473	SINE	B1_Mur2	Alu	chr4B1_Mur2118174393	ProperStrand	1	chr4	118173782	118173814	SINE	B3	B2	chr4B3118173787	ProperStrand	1	1	-inf
chr9	21755769	21755818	SINE	B3	B2	chr9B321755686	NonProperStrand	4	chr9	21755519	21755599	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n21755504	NonProperStrand	1	1	-inf
chr8	109874921	109875005	protein_coding	Nfat5	intron	ENSMUSG00000003847	ProperStrand	41	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-12.8607
chr18	66975226	66975326	LINE	Lx9	L1	chr18Lx966975241	NonProperStrand	1	chr18	66974951	66975041	LTR	ORR1B2	MaLR	chr18ORR1B266974929	NonProperStrand	1	1	-inf
chr11	73328782	73328872	LINE	Lx6	L1	chr11Lx673328266	ProperStrand	2	chr4	132309492	132309593	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	2	-inf
chr6	33056276	33056298	LINE	L1M5	L1	chr6L1M533056171	ProperStrand	1	chr17	39846411	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	85924815	85924832	LINE	L1Md_F3	L1	chrXL1Md_F385924679	NonProperStrand	2	chr18	42522946	42523042	SINE	B2_Mm2	B2	chr18B2_Mm242522832	ProperStrand	1	1	-inf
chr11	109011790	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	46682149	46682220	protein_coding	Cap2	intron	ENSMUSG00000021373	NonProperStrand	63	1	-6.0035
chr11	50262756	50262841	SINE	B2_Mm1a	B2	chr11B2_Mm1a50262700	NonProperStrand	2	chr11	50262268	50262343	SINE	B3	B2	chr11B350262152	NonProperStrand	2	2	-inf
chr13	112578190	112578662	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr1	118409277	118453584	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	2	-4.8536
chr5	146261008	146261032	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	22547953	22547987	protein_coding	Lhfpl3	intron	ENSMUSG00000058361	NonProperStrand	52	1	-5.3411
chr17	28806798	28806850	protein_coding	Slc26a8	intron	ENSMUSG00000036196	ProperStrand	3	chr9	118674951	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-15.8356
chr1	93621416	93621506	LINE	Lx6	L1	chr1Lx693621402	ProperStrand	2	chr1	93621316	93621416	LTR	RLTR18B	ERVK	chr1RLTR18B93621248	ProperStrand	2	2	-inf
chr11	20056185	20056227	SINE	B1_Mus2	Alu	chr11B1_Mus220056170	NonProperStrand	1	chrX	130463467	130463483	protein_coding	Srpx2	intron	ENSMUSG00000031253	NonProperStrand	2	1	-inf
chr9	47842731	47842779	LINE	Lx5	L1	chr9Lx547842698	ProperStrand	1	chr17	12203605	12203668	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	1	-inf
chr4	53860712	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr9	40804746	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-4.8990
chr17	84441240	84441340	LINE	L1M5	L1	chr17L1M584441222	NonProperStrand	1	chr17	84440951	84441041	LTR	RLTR31A_Mm	ERVK	chr17RLTR31A_Mm84440686	NonProperStrand	1	1	-inf
chr18	38451564	38451585	LTR	ORR1D2-int	MaLR	chr18ORR1D2-int38451147	NonProperStrand	2	chr18	38464331	38464380	protein_coding	Rnf14	intron	ENSMUSG00000060450	ProperStrand	8	1	-23.4058
chr17	74599018	74599048	LINE	L1ME4a	L1	chr17L1ME4a74598901	ProperStrand	1	chr17	39847439	39847479	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	143070873	143070971	LINE	L1Md_F2	L1	chr6L1Md_F2143070634	ProperStrand	2	chr19	7320709	7320768	LTR	ORR1B1	MaLR	chr19ORR1B17320503	ProperStrand	1	1	-inf
chr17	39846410	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	83821934	83821967	SINE	B2_Mm1t	B2	chr6B2_Mm1t83821889	ProperStrand	1	1	-inf
chr18	37937667	37941011	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	chr12	79340276	79340341	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-5.6847
chr12	69157769	69159026	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	chr17	39846415	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	5	-3.8940
chr2	133981159	133981179	LINE	L1_Mur3	L1	chr2L1_Mur3133980743	NonProperStrand	4	chr17	39847552	39847602	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr5	88584230	88584281	LINE	L1_Mur3	L1	chr5L1_Mur388583674	ProperStrand	7	chr7	141984950	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-14.5239
chr2	25950827	25950881	protein_coding	Nacc2	intron	ENSMUSG00000026932	ProperStrand	67	chr2	151546965	151547048	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	58	1	-11.8687
chr1	63576974	63577032	protein_coding-noncoding	Adam23	utr5	ENSMUSG00000025964	ProperStrand	31	chr17	78935009	78935098	protein_coding	Vit	intron	ENSMUSG00000024076	NonProperStrand	35	1	-14.4517
chr2	153661509	153661561	LINE	L1MA7	L1	chr2L1MA7153661397	NonProperStrand	2	chr17	39847277	39847345	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr3	86090485	86090540	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	chr9	78479186	78479355	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-6.6158
chr17	57269179	57269253	Other	RMER1A	Other	chr17RMER1A57269014	ProperStrand	1	chr17	57263892	57263976	Other	RMER1C	Other	chr17RMER1C57263719	NonProperStrand	1	1	-inf
chr17	39847440	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	48544366	48544406	SINE	B4A	B4	chr13B4A48544229	NonProperStrand	1	1	-inf
chr1	195005766	195005828	protein_coding	Traf3ip3	intron	ENSMUSG00000037318	NonProperStrand	5	chr6	93811897	93811966	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-11.4226
chr15	100620151	100620168	protein_coding	Slc4a8	intron	ENSMUSG00000023032	ProperStrand	6	chr9	123462080	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr13	21780441	21780503	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr6	39420099	39420187	protein_coding	Dennd2a	intron	ENSMUSG00000038456	ProperStrand	103	3	-20.2696
chr17	83862021	83862047	protein_coding	Eml4	intron	ENSMUSG00000032624	ProperStrand	63	chr11	87462419	87471495	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-8.4409
chr2	160645207	160645286	protein_coding	Zhx3	intron	ENSMUSG00000035877	ProperStrand	62	chr8	89032910	89032990	protein_coding	Abcc12	intron	ENSMUSG00000036872	ProperStrand	128	1	-10.4351
chr6	3201455	3201545	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	79862187	79862241	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	30	1	-4.1758
chr1	122357197	122357227	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr13	8974956	8977271	protein_coding	Gtpbp4	intron	ENSMUSG00000021149	ProperStrand	25	1	-10.6773
chr13	113795878	113795943	LINE	L1Md_F	L1	chr13L1Md_F113793683	NonProperStrand	15	chr15	77775137	77775185	protein_coding	Foxred2	intron	ENSMUSG00000016552	ProperStrand	71	1	-14.5082
chr17	39847183	39847218	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	161107187	161107205	LTR	RMER15	ERVL	chr1RMER15161106907	ProperStrand	2	1	-6.5615
chr10	29335961	29336012	LINE	L1_Mus3	L1	chr10L1_Mus329335730	ProperStrand	1	chr17	39846940	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	23785355	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr10	77092615	77092635	protein_coding	Ube2g2	intron	ENSMUSG00000009293	NonProperStrand	37	1	-11.0296
chr13	97190552	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr11	117141773	117143325	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-3.3798
chr17	88053848	88053938	LTR	ETnERV2-int	ERVK	chr17ETnERV2-int88053498	NonProperStrand	1	chr4	140951474	140951574	protein_coding	Clcnka	intron	ENSMUSG00000033770	NonProperStrand	8	1	-inf
chrX	7960584	7960698	LINE	L1Md_A	L1	chrXL1Md_A7959812	ProperStrand	2	chrX	7978407	7978426	LINE	L1_Mm	L1	chrXL1_Mm7978198	NonProperStrand	1	1	-inf
chr3	65655736	65655796	LINE	Lx5	L1	chr3Lx565654920	NonProperStrand	2	chr17	39846703	39846732	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr14	30489461	30489552	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	112	chr15	80072389	80072434	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-6.8464
chr18	32080433	32080522	LTR	MTC	MaLR	chr18MTC32080422	ProperStrand	2	chr16	58733440	58733501	protein_coding	Cldn25	utr3	ENSMUSG00000022744	ProperStrand	2	1	-19.8939
chr17	39847743	39847785	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	33360987	33361096	SINE	B1_Mur3	Alu	chr2B1_Mur333361006	NonProperStrand	2	1	-5.4040
chr16	83543970	83544070	LINE	L1_Mur3	L1	chr16L1_Mur383543806	ProperStrand	1	chr16	83544159	83544249	SINE	B2_Mm2	B2	chr16B2_Mm283544171	ProperStrand	1	1	-inf
chr5	33531476	33531566	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr2	84649606	84649706	protein_coding	Ube2l6	utr3	ENSMUSG00000027078	NonProperStrand	7	1	-15.4422
chr8	127941195	127941295	LINE	L4	RTE	chr8L4127941194	NonProperStrand	1	chr8	127941487	127941577	SINE	PB1D10	Alu	chr8PB1D10127941468	NonProperStrand	1	1	-inf
chr7	112789201	112789278	protein_coding-noncoding	Fxc1	utr5	ENSMUSG00000089847	ProperStrand	2	chr7	112788661	112788744	protein_coding	Fxc1	utr5	ENSMUSG00000089847	ProperStrand	81	2	-inf
chr14	117012159	117012249	LINE	Lx9	L1	chr14Lx9117012157	NonProperStrand	1	chr14	117011980	117012080	LTR	RMER19C	ERVK	chr14RMER19C117011494	ProperStrand	1	1	-inf
chr1	106194110	106194150	LINE	L1_Mus2	L1	chr1L1_Mus2106191984	NonProperStrand	5	chr1	106194877	106194957	LINE	Lx3A	L1	chr1Lx3A106194446	NonProperStrand	1	1	-inf
chr11	97928680	97928725	LTR	RLTR27	ERVK	chr11RLTR2797928690	NonProperStrand	1	chr17	39847736	39847782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	150985018	150985049	LINE	L1_Mus3	L1	chrXL1_Mus3150983431	NonProperStrand	5	chr6	120757882	120757972	protein_coding	Atp6v1e1	intron	ENSMUSG00000019210	NonProperStrand	42	1	-18.0379
chr4	134468397	134470133	protein_coding	Tmem50a	intron	ENSMUSG00000028822	NonProperStrand	19	chr19	8948367	8949007	protein_coding	Ubxn1	intron	ENSMUSG00000071655	ProperStrand	13	1	-17.5680
chr5	136464987	136465077	SINE	B1_Mur4	Alu	chr5B1_Mur4136464987	NonProperStrand	1	chr5	136465171	136465271	SINE	ID_B1	B4	chr5ID_B1136465144	NonProperStrand	1	1	-inf
chr7	80057423	80057544	LTR	MLT1C	MaLR	chr7MLT1C80057318	ProperStrand	11	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-11.3046
chr5	146834475	146835645	LINE	L1_Mur2	L1	chr5L1_Mur2146834958	ProperStrand	33	chr5	146835565	146835978	LINE	L1_Mur2	L1	chr5L1_Mur2146835560	ProperStrand	46	24	-inf
chr19	37311540	37311614	LINE	Lx8	L1	chr19Lx837311541	NonProperStrand	1	chr5	146261170	146261229	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr11	78679187	78679214	LTR	RMER15	ERVL	chr11RMER1578678959	ProperStrand	1	chr11	78679750	78679836	SINE	B1_Mur4	Alu	chr11B1_Mur478679736	ProperStrand	1	1	-inf
chr1	164423266	164423322	LINE	L1Md_T	L1	chr1L1Md_T164419671	ProperStrand	5	chr1	164427848	164427914	LINE	L2	L2	chr1L2164427679	ProperStrand	7	1	-21.1751
chr13	28026798	28026888	LINE	L1Md_F2	L1	chr13L1Md_F228026015	NonProperStrand	1	chr13	28027030	28027130	LINE	L1_Mm	L1	chr13L1_Mm28027057	ProperStrand	1	1	-inf
chr11	109011648	109011674	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	20562460	20562476	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	24	1	-7.9304
chr9	61413987	61414041	LTR	MLT1A1	MaLR	chr9MLT1A161413979	NonProperStrand	2	chr9	61414728	61414792	LTR	MLT1K	MaLR	chr9MLT1K61414739	NonProperStrand	2	2	-inf
chrX	88075200	88075300	LINE	Lx5	L1	chrXLx588075122	ProperStrand	1	chr12	48138828	48138918	SINE	B3A	B2	chr12B3A48138807	NonProperStrand	1	1	-inf
chr17	39847736	39847868	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	17746735	17746751	protein_coding	Crispld1	intron	ENSMUSG00000025776	NonProperStrand	4	1	-3.7035
chr8	110162551	110162651	SINE	B2_Mm2	B2	chr8B2_Mm2110162535	ProperStrand	1	chr8	110161984	110162074	SINE	ID_B1	B4	chr8ID_B1110161951	NonProperStrand	1	1	-inf
chr17	39846656	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	22071062	22071131	LTR	RLTR25A	ERVK	chr9RLTR25A22070794	NonProperStrand	1	1	-inf
chr2	13878957	13878993	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	12	chr5	122158586	122168272	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	1	-13.9023
chr10	17124520	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr15	98931516	98931640	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	1	-10.4788
chr2	146246809	146310839	protein_coding-noncoding	Ralgapa2	utr3	ENSMUSG00000037110	ProperStrand	2	chr2	146245640	146310415	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	ProperStrand	101	2	-inf
chr6	60427420	60451812	LTR	RLTR13D5	ERVK	chr6RLTR13D560427032	ProperStrand	2	chr6	60451819	60451919	LTR	RMER4A	ERVK	chr6RMER4A60451740	ProperStrand	2	2	-inf
chr2	169884922	169884938	protein_coding	Tshz2	intron	ENSMUSG00000047907	ProperStrand	9	chr5	17776752	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-13.9937
chr12	111093857	111093894	LINE	L1M4b	L1	chr12L1M4b111093828	NonProperStrand	1	chr17	39846462	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	108945403	108946970	protein_coding	Shisa5	intron	ENSMUSG00000025647	ProperStrand	64	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.8440
chr11	117322748	117322838	Low_complexity	CT-rich	Low_complexity	chr11CT-rich117322726	ProperStrand	3	chr11	117322842	117322942	SINE	B2_Mm2	B2	chr11B2_Mm2117322870	NonProperStrand	3	3	-inf
chr4	125126743	125126794	SINE	MIR	MIR	chr4MIR125126681	ProperStrand	8	chr9	123461957	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr5	134370474	134370573	LTR	MTEa	MaLR	chr5MTEa134370391	NonProperStrand	2	chr9	123462120	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39846687	39846722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	90006378	90006489	protein_coding	Nup210l	intron	ENSMUSG00000027939	ProperStrand	5	1	-3.1907
chr17	39847164	39847268	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr6	95655508	95655539	protein_coding	Suclg2	intron	ENSMUSG00000061838	NonProperStrand	15	1	-16.5414
chr11	18205345	18205445	LINE	L1MC	L1	chr11L1MC18205212	NonProperStrand	1	chr11	18205615	18205704	SINE	B4A	B4	chr11B4A18205598	NonProperStrand	1	1	-inf
chr10	53544453	53544543	LINE	L1_Mur3	L1	chr10L1_Mur353544193	ProperStrand	1	chr17	39847241	39847341	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	106911766	106911814	protein_coding	Lrrc42	intron	ENSMUSG00000028617	NonProperStrand	62	chr4	107027272	107028225	protein_coding	Yipf1	intron	ENSMUSG00000057375	ProperStrand	174	2	-15.5134
chr2	22744841	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	97166104	97167602	SINE	B2_Mm2	B2	chr11B2_Mm297167457	ProperStrand	5	1	-11.9551
chr11	60265368	60265458	LTR	RLTR11B	ERVK	chr11RLTR11B60265383	ProperStrand	2	chr11	60265265	60265365	SINE	B1_Mur3	Alu	chr11B1_Mur360265260	ProperStrand	2	2	-inf
chr13	29679623	29679657	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr8	126355202	126355246	protein_coding	Rab4a	intron	ENSMUSG00000019478	ProperStrand	3	1	-14.3137
chr17	39847098	39847198	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	30853288	30853378	protein_coding	Erlec1	intron	ENSMUSG00000020311	NonProperStrand	8	1	-3.3803
chr16	4497143	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	chr17	46667856	46667972	protein_coding	Cul9	intron	ENSMUSG00000040327	ProperStrand	54	1	-14.0078
chr7	134879004	134879075	LTR	MERVL-int	ERVL	chr7MERVL-int134876104	NonProperStrand	19	chr7	134941477	134941518	protein_coding	Setd1a	intron	ENSMUSG00000042308	ProperStrand	59	1	-14.3934
chr5	88579163	88579210	LINE	L1Md_A	L1	chr5L1Md_A88574957	NonProperStrand	24	chr5	88583811	88583906	LINE	L1_Mur3	L1	chr5L1_Mur388583674	ProperStrand	7	1	-18.3728
chr19	41877897	41878044	LTR	RMER21B	ERV1	chr19RMER21B41877758	NonProperStrand	1	chr19	41880384	41880414	SINE	B1_Mus2	Alu	chr19B1_Mus241880315	NonProperStrand	3	1	-inf
chrX	88602880	88602980	LINE	Lx	L1	chrXLx88602759	ProperStrand	1	chrX	88602246	88602336	LTR	RMER2	ERV1	chrXRMER288602133	NonProperStrand	1	1	-inf
chr9	26243994	26244094	Simple_repeat	(TAGA)n	Simple_repeat	chr9(TAGA)n26243921	NonProperStrand	1	chr9	24065048	24065138	protein_coding	Npsr1	intron	ENSMUSG00000043659	NonProperStrand	2	1	-inf
chr4	150318529	150318565	protein_coding	Tnfrsf9	intron	ENSMUSG00000028965	ProperStrand	158	chr15	5180773	5180819	protein_coding	Ptger4	intron	ENSMUSG00000039942	NonProperStrand	14	1	-13.0421
chr1	7381678	7381720	lincRNA	Gm16899	intron	ENSMUSG00000086461	ProperStrand	3	chr9	108534395	108534447	protein_coding	Arih2	intron	ENSMUSG00000064145	NonProperStrand	62	1	-18.2512
chr1	96394468	96394558	LINE	L1_Mur3	L1	chr1L1_Mur396394133	NonProperStrand	1	chr1	100116151	100116251	LINE	Lx7	L1	chr1Lx7100114985	ProperStrand	1	1	-inf
chr11	86695260	86695360	SINE	B3A	B2	chr11B3A86695272	NonProperStrand	1	chr11	97185106	97187573	protein_coding	Mrpl45	intron	ENSMUSG00000018882	NonProperStrand	37	1	-inf
chr16	33047642	33047692	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr9	63978015	63978088	protein_coding	Lctl	intron	ENSMUSG00000032401	NonProperStrand	22	2	-inf
chr10	101650822	101650912	protein_coding	Mgat4c	intron	ENSMUSG00000019888	ProperStrand	16	chr9	42568962	42569062	protein_coding	Grik4	intron	ENSMUSG00000032017	NonProperStrand	14	2	-21.2732
chr5	146260998	146261212	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	35981691	35981762	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	2	-5.6026
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	127769205	127769266	protein_coding	Lypd1	utr3	ENSMUSG00000026344	ProperStrand	6	1	-11.5505
chr14	31013080	31013119	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr11	95675157	95675206	protein_coding	Zfp652	intron	ENSMUSG00000075595	ProperStrand	82	1	-8.4900
chr17	39846455	39846503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	9197235	9197338	Simple_repeat	(CA)n	Simple_repeat	chr16(CA)n9197210	ProperStrand	1	1	-inf
chr17	16334917	16335007	LINE	L1MA6	L1	chr17L1MA616334924	ProperStrand	1	chr17	16335113	16335213	LINE	L1Md_F2	L1	chr17L1Md_F216335067	ProperStrand	1	1	-inf
chr16	22233685	22233775	LINE	Lx9	L1	chr16Lx922233667	ProperStrand	1	chr16	22233360	22233460	LTR	RMER20A	ERVK	chr16RMER20A22233150	ProperStrand	1	1	-inf
chr15	82599585	82599685	LTR	ORR1A2-int	MaLR	chr15ORR1A2-int82599198	ProperStrand	1	chr15	82599802	82599892	LTR	ORR1A2	MaLR	chr15ORR1A282599700	ProperStrand	1	1	-inf
chr7	100092980	100093015	LINE	L1_Mus1	L1	chr7L1_Mus1100092557	ProperStrand	1	chr15	98907655	98907708	protein_coding	Troap	intron	ENSMUSG00000032783	NonProperStrand	21	1	-inf
chr9	99254347	99262592	SINE	MIR	MIR	chr9MIR99262462	ProperStrand	3	chr11	33161193	33161592	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	2	-inf
chr14	66987691	66987768	LTR	ORR1A4	MaLR	chr14ORR1A466987682	NonProperStrand	2	chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr13	112578189	112578262	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr10	105238438	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-4.8449
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	122497804	122497855	protein_coding	Mon2	intron	ENSMUSG00000034602	ProperStrand	2	1	-8.4422
chr5	82590890	82590980	LTR	MLT1G1	MaLR	chr5MLT1G182590881	ProperStrand	1	chr17	75702954	75703054	protein_coding	Ltbp1	intron	ENSMUSG00000001870	ProperStrand	11	1	-inf
chr19	41933633	41933663	LTR	ORR1C1	MaLR	chr19ORR1C141933353	NonProperStrand	4	chr19	41934773	41934793	SINE	B3	B2	chr19B341934603	ProperStrand	2	2	-inf
chr4	121012378	121012468	LINE	L1Md_F2	L1	chr4L1Md_F2121012254	ProperStrand	1	chr4	121012024	121012124	LTR	ORR1D2	MaLR	chr4ORR1D2121012026	NonProperStrand	1	1	-inf
chr1	39921208	39921259	SINE	B3	B2	chr1B339921126	ProperStrand	2	chr13	97190590	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr3	32587738	32587812	LINE	Lx7	L1	chr3Lx732587419	ProperStrand	1	chr2	52122400	52122484	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-inf
chr5	142903787	142903879	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	chr12	79809080	79809126	protein_coding	Fam71d	intron	ENSMUSG00000056987	ProperStrand	53	3	-18.6509
chr9	88441273	88441363	LTR	MLT1F2	MaLR	chr9MLT1F288441137	NonProperStrand	1	chr9	88441601	88441701	SINE	B1_Mus2	Alu	chr9B1_Mus288441626	NonProperStrand	1	1	-inf
chr13	3905407	3905507	protein_coding	Net1	intron	ENSMUSG00000021215	ProperStrand	33	chr16	28917120	28917210	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	1	-11.8216
chr2	71795370	71795486	DNA	URR1A	MER1_type	chr2URR1A71795330	NonProperStrand	6	chr2	71795284	71795388	lincRNA	Gm13746	exon	ENSMUSG00000087345	ProperStrand	12	5	-inf
chr5	70699341	70699441	LINE	Lx5	L1	chr5Lx570699315	ProperStrand	2	chr5	70658730	70658820	LTR	IAPLTR3-int	ERVK	chr5IAPLTR3-int70658271	ProperStrand	2	2	-inf
chr10	95269419	95269463	LINE	L1_Mus1	L1	chr10L1_Mus195269329	NonProperStrand	5	chr17	39846352	39846405	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr11	98029464	98029507	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	chr5	92174019	92177463	pseudogene	Gm15710	.	ENSMUSG00000084111	NonProperStrand	50	1	-11.0483
chr3	18182753	18182843	LINE	Lx8	L1	chr3Lx818182717	NonProperStrand	1	chr3	18183142	18183242	LINE	Lx8	L1	chr3Lx818183055	NonProperStrand	1	1	-inf
chr2	150407614	150407691	LTR	RMER4B	ERVK	chr2RMER4B150407201	ProperStrand	2	chr3	88098238	88098315	protein_coding	1700021C14Rik	intron	ENSMUSG00000010538	NonProperStrand	23	2	-inf
chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chr1	82882315	82882419	protein_coding	Agfg1	intron	ENSMUSG00000026159	ProperStrand	65	1	-11.6395
chr16	10039950	10040050	LTR	MTC-int	MaLR	chr16MTC-int10039739	ProperStrand	1	chr16	10040058	10040148	LTR	MTC	MaLR	chr16MTC10040084	ProperStrand	1	1	-inf
chr9	58818398	58818512	protein_coding	Neo1	intron	ENSMUSG00000032340	ProperStrand	39	chr4	108231382	108231420	protein_coding	Zcchc11	utr3	ENSMUSG00000034610	NonProperStrand	31	1	-14.2301
chr3	95636568	95653027	protein_coding-noncoding	Prpf3	utr3	ENSMUSG00000015748	NonProperStrand	2	chr3	95641689	95652777	protein_coding	Prpf3	intron	ENSMUSG00000015748	NonProperStrand	78	2	-inf
chr17	39846411	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	25235601	25235747	protein_coding	Ift140	exon	ENSMUSG00000024169	NonProperStrand	3	1	-4.3017
chr15	53281037	53281077	LINE	Lx8	L1	chr15Lx853280715	ProperStrand	4	chr15	53296038	53296133	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-14.0205
chr17	46582659	46582685	protein_coding	Ttbk1	intron	ENSMUSG00000015599	ProperStrand	78	chr11	118415602	118415649	protein_coding	Rbfox3	intron	ENSMUSG00000025576	ProperStrand	62	1	-11.4288
chr11	120188856	120188923	LTR	IAPEz-int	ERVK	chr11IAPEz-int120182724	NonProperStrand	5	chr17	39847611	39847668	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr17	39847863	39847959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	62019059	62019123	protein_coding	2510003E04Rik	intron	ENSMUSG00000036955	ProperStrand	2	1	-5.4040
chr11	101752363	101752453	antisense	Gm11551	.	ENSMUSG00000085594	ProperStrand	5	chr11	101752481	101753233	protein_coding	Meox1	intron	ENSMUSG00000001493	NonProperStrand	5	4	-inf
chrX	60284053	60284153	LINE	Lx	L1	chrXLx60283177	ProperStrand	2	chrX	60284261	60284351	LINE	Lx	L1	chrXLx60284080	ProperStrand	3	2	-inf
chr6	120394204	120398992	LTR	ORR1D-int	MaLR	chr6ORR1D-int120398626	ProperStrand	3	chr6	120394101	120394191	protein_coding	Kdm5a	utr3	ENSMUSG00000030180	ProperStrand	18	3	-inf
chr9	123462079	123462141	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	69177682	69177760	protein_coding	Abcb11	intron	ENSMUSG00000027048	ProperStrand	3	1	-7.0114
chr1	36908955	36909016	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	chr13	20302868	20302933	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	1	-6.8945
chr3	35765853	35765936	LINE	Lx7	L1	chr3Lx735765784	ProperStrand	1	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-inf
chr3	3528663	3528763	protein_coding	Hnf4g	intron	ENSMUSG00000017688	ProperStrand	4	chr14	33967697	33967787	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-17.2688
chr2	32154211	32154285	protein_coding	Golga2	intron	ENSMUSG00000002546	ProperStrand	57	chr1	13142652	13142681	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	1	-9.8672
chr4	32681384	32681435	SINE	B1_Mus1	Alu	chr4B1_Mus132681374	NonProperStrand	1	chr4	62383832	62383873	lincRNA	Gm11210	intron	ENSMUSG00000085223	ProperStrand	15	1	-inf
chr8	72536626	72536726	SINE	B1_Mur1	Alu	chr8B1_Mur172536640	NonProperStrand	3	chr8	72536782	72536872	SINE	B3A	B2	chr8B3A72536792	ProperStrand	2	2	-inf
chr19	45782106	45782167	SINE	B1_Mur4	Alu	chr19B1_Mur445782072	ProperStrand	1	chr19	45782466	45782541	Simple_repeat	(TCTCTG)n	Simple_repeat	chr19(TCTCTG)n45782184	NonProperStrand	1	1	-inf
chr11	98953333	98953423	LTR	MTD	MaLR	chr11MTD98953266	ProperStrand	5	chr11	98953430	98953531	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n98953405	ProperStrand	5	5	-inf
chr7	28179136	28179188	protein_coding	Spnb4	intron	ENSMUSG00000011751	NonProperStrand	106	chr5	122173163	122173243	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	1	-9.4718
chr1	119497195	119497285	LINE	L1_Mus2	L1	chr1L1_Mus2119497214	NonProperStrand	8	chr1	119497097	119497197	LINE	Lx4B	L1	chr1Lx4B119497014	ProperStrand	4	4	-inf
chrX	73949653	73949732	LINE	L1Md_T	L1	chrXL1Md_T73946773	ProperStrand	32	chr1	122357170	122357227	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	1	-10.1757
chr7	122095105	122095155	LTR	MTB_Mm-int	MaLR	chr7MTB_Mm-int122095001	NonProperStrand	1	chr7	122094951	122095012	LTR	MTB_Mm	MaLR	chr7MTB_Mm122094630	NonProperStrand	1	1	-inf
chr17	56815917	56815991	protein_coding	Ranbp3	intron	ENSMUSG00000002372	NonProperStrand	37	chr4	24628597	24628616	protein_coding	Klhl32	intron	ENSMUSG00000040387	ProperStrand	26	1	-14.7002
chr17	4082172	4082262	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr10	28934237	28934337	protein_coding	9330159F19Rik	intron	ENSMUSG00000004360	ProperStrand	1	1	-inf
chr17	32031855	32031955	LINE	HAL1-2a_MD	L1	chr17HAL1-2a_MD32031759	NonProperStrand	5	chr17	32031971	32032061	LINE	L1MC5	L1	chr17L1MC532031973	NonProperStrand	5	5	-inf
chr5	114851997	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr15	72806630	72806657	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	1	-5.9870
chr11	62281105	62281216	protein_coding	Pigl	intron	ENSMUSG00000014245	NonProperStrand	26	chr11	62260239	62260282	protein_coding	Ncor1	intron	ENSMUSG00000018501	ProperStrand	15	1	-16.5414
chr4	139259392	139259482	SINE	B1_Mm	Alu	chr4B1_Mm139259341	ProperStrand	1	chr4	139259540	139259640	SINE	B3	B2	chr4B3139259502	NonProperStrand	1	1	-inf
chr17	39847958	39848013	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	149612205	149615185	protein_coding	Eno1	intron	ENSMUSG00000063524	ProperStrand	12	2	-3.1700
chr17	39843472	39843557	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr12	76229380	76230149	protein_coding	Kcnh5	intron	ENSMUSG00000034402	NonProperStrand	68	2	-4.1778
chr6	12033749	12033777	LINE	Lx	L1	chr6Lx12033184	NonProperStrand	1	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-inf
chr14	12125452	12125542	LTR	MER34A1	ERV1	chr14MER34A112125478	NonProperStrand	1	chr14	12125328	12125427	SINE	B1_Mm	Alu	chr14B1_Mm12125288	NonProperStrand	1	1	-inf
chr11	109011794	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	30317683	30317750	protein_coding	Atp13a3	intron	ENSMUSG00000022533	ProperStrand	59	1	-6.1327
chr10	77453274	77453374	protein_coding-noncoding	Pfkl	utr3	ENSMUSG00000020277	NonProperStrand	1	chr10	77453174	77453264	protein_coding	Pfkl	intron	ENSMUSG00000020277	NonProperStrand	1	1	-inf
chr18	44424182	44424215	LTR	IAPEz-int	ERVK	chr18IAPEz-int44418347	NonProperStrand	16	chr11	72451373	72451416	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	1	-13.5679
chr17	39847611	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	97969648	97969754	protein_coding	Asb8	intron	ENSMUSG00000048175	NonProperStrand	2	1	-5.4040
chr16	33477186	33477237	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	chr14	11648198	11648290	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-6.2947
chr16	93882646	93882746	LTR	ORR1A2	MaLR	chr16ORR1A293882492	NonProperStrand	1	chr16	93882316	93882406	SINE	B2_Mm1t	B2	chr16B2_Mm1t93882274	NonProperStrand	1	1	-inf
chr5	146260994	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	96965649	96965742	protein_coding	Tbx21	intron	ENSMUSG00000001444	ProperStrand	15	1	-7.8289
chr5	110212869	110212969	Satellite	MMSAT4	Satellite	chr5MMSAT4110212827	NonProperStrand	2	chr5	110212754	110212844	Unknown	MurSatRep1	Unknown	chr5MurSatRep1110212063	NonProperStrand	2	2	-inf
chr2	112382152	112382196	protein_coding	Aven	intron	ENSMUSG00000003604	ProperStrand	47	chr1	131238008	131238042	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-9.6619
chr1	135400398	135400498	LINE	Lx8	L1	chr1Lx8135400364	NonProperStrand	1	chr1	135400103	135400193	LTR	MTC	MaLR	chr1MTC135399872	NonProperStrand	1	1	-inf
chr2	122243821	122243857	LTR	RMER6A	ERVK	chr2RMER6A122243784	ProperStrand	2	chr2	122243655	122243681	Simple_repeat	(CAGAGA)n	Simple_repeat	chr2(CAGAGA)n122243614	ProperStrand	3	2	-inf
chr2	164440135	164440712	protein_coding	Wfdc6b	intron	ENSMUSG00000070531	NonProperStrand	21	chr2	164433835	164434354	protein_coding	Wfdc8	intron	ENSMUSG00000070533	ProperStrand	51	2	-inf
chr1	155191100	155191195	LINE	L1VL4	L1	chr1L1VL4155188810	NonProperStrand	1	chr7	130428753	130428813	protein_coding	Arhgap17	intron	ENSMUSG00000030766	ProperStrand	89	1	-inf
chr2	58812236	58812336	protein_coding	Ccdc148	intron	ENSMUSG00000036641	NonProperStrand	16	chr2	58811999	58812089	pseudogene	Gm13557	.	ENSMUSG00000082989	NonProperStrand	2	2	-inf
chr1	10808283	10808341	LTR	MMETn-int	ERVK	chr1MMETn-int10807270	NonProperStrand	1	chr9	100887867	100887924	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	1	-inf
chr4	139349389	139349428	protein_coding	Pax7	intron	ENSMUSG00000028736	ProperStrand	24	chr2	5379294	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.3454
chr6	48621450	48621517	LINE	L1MC2	L1	chr6L1MC248621334	NonProperStrand	2	chr17	39848033	39848071	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr15	27620110	27620131	LINE	Lx3_Mus	L1	chr15Lx3_Mus27620066	NonProperStrand	1	chr6	129541971	129542092	protein_coding	Klrd1	intron	ENSMUSG00000030165	ProperStrand	9	1	-inf
chr17	39846453	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	84783769	84783860	protein_coding-noncoding	Exoc6b	utr3	ENSMUSG00000033769	ProperStrand	5	1	-3.1907
chr17	35344571	35344661	SINE	B1_Mur2	Alu	chr17B1_Mur235344545	ProperStrand	1	chr17	35344326	35344426	SINE	B1_Mus1	Alu	chr17B1_Mus135344258	ProperStrand	1	1	-inf
chr6	49244568	49244668	SINE	B1_Mus2	Alu	chr6B1_Mus249244575	NonProperStrand	4	chr1	181910740	181910830	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-13.7046
chr17	39847747	39847847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	4860544	4860634	protein_coding	Ctsf	utr3	ENSMUSG00000083282	ProperStrand	2	1	-5.4040
chr17	39847734	39847803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	87739253	87739318	LTR	RMER16-int	ERVK	chr8RMER16-int87738124	ProperStrand	10	3	-5.7899
chr14	99948917	99948994	SINE	B4	B4	chr14B499948852	ProperStrand	1	chr17	39843428	39843488	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr4	25740276	25740366	LINE	L1_Mur3	L1	chr4L1_Mur325740222	ProperStrand	1	chr4	25740125	25740225	SINE	B4	B4	chr4B425740149	NonProperStrand	1	1	-inf
chr5	128243322	128243366	LTR	RLTR11A	ERVK	chr5RLTR11A128243210	NonProperStrand	2	chr5	128265603	128265637	protein_coding	Tmem132d	intron	ENSMUSG00000034310	ProperStrand	110	2	-inf
chr17	70963685	70963759	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	17397919	17397960	protein_coding	Pi4ka	intron	ENSMUSG00000041720	ProperStrand	50	1	-6.5683
chr10	77049970	77050043	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	ProperStrand	20	chr16	57308064	57308106	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	NonProperStrand	14	1	-17.1904
chr5	144197972	144198574	LTR	RMER19B	ERVK	chr5RMER19B144198025	NonProperStrand	1	chr4	123662266	123662330	SINE	B3A	B2	chr4B3A123662255	NonProperStrand	1	1	-inf
chr17	39846819	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	30641067	30641177	lincRNA	Gm17551	intron	ENSMUSG00000092015	NonProperStrand	2	1	-5.3533
chr12	88830489	88830589	LTR	ORR1A2-int	MaLR	chr12ORR1A2-int88829576	ProperStrand	2	chr12	88830926	88831016	SINE	B2_Mm1a	B2	chr12B2_Mm1a88830878	ProperStrand	1	1	-inf
chr6	33369487	33369527	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr1	84131703	84131743	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	1	-5.0703
chr9	123459603	123461499	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr17	24720661	24721013	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	2	-16.7267
chr17	39846582	39846658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	87889998	87890223	SINE	B1_Mur2	Alu	chr6B1_Mur287890196	NonProperStrand	2	1	-5.3533
chr9	86699131	86699739	protein_coding	Snap91	intron	ENSMUSG00000033419	ProperStrand	34	chr13	37993470	37993499	protein_coding	Rreb1	intron	ENSMUSG00000039087	NonProperStrand	39	1	-14.0407
chr2	18074515	18074585	protein_coding	Mllt10	intron	ENSMUSG00000026743	ProperStrand	47	chr11	33160395	33160425	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-7.9309
chr2	80555307	80555407	LINE	L1_Mus1	L1	chr2L1_Mus180555106	ProperStrand	1	chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	13347186	13347249	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	chr4	147063427	147063447	protein_coding	Zfp534	intron	ENSMUSG00000062518	NonProperStrand	13	1	-13.2622
chrX	159590451	159590516	LTR	MLT1F	MaLR	chrXMLT1F159590381	NonProperStrand	1	chr19	8724866	8724941	SINE	B3A	B2	chr19B3A8724791	NonProperStrand	14	1	-inf
chr17	39847159	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	51313643	51313676	SINE	RSINE1	B4	chr3RSINE151313578	ProperStrand	1	1	-inf
chr13	97146299	97149382	LINE	Lx5	L1	chr13Lx597149234	NonProperStrand	4	chr13	97149393	97150413	Simple_repeat	(GAA)n	Simple_repeat	chr13(GAA)n97150334	ProperStrand	5	4	-inf
chr17	39846818	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	51461964	51462077	SINE	B3	B2	chr6B351461892	ProperStrand	2	1	-5.3533
chr12	11301944	11301982	protein_coding	Smc6	intron	ENSMUSG00000020608	ProperStrand	24	chr13	97190547	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.9352
chr16	23108592	23108755	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	123	chr1	157203261	157203319	protein_coding	Xpr1	intron	ENSMUSG00000026469	ProperStrand	32	1	-11.8507
chr9	58457079	58457168	protein_coding	Nptn	intron	ENSMUSG00000032336	ProperStrand	68	chr1	131573998	131574035	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-8.7148
chr15	58087566	58087629	lincRNA	Gm15943	intron	ENSMUSG00000086801	NonProperStrand	53	chr7	48816788	48816881	protein_coding	Gm6871	intron	ENSMUSG00000090744	NonProperStrand	10	1	-15.9353
chr9	31363832	31363922	SINE	B1_Mus1	Alu	chr9B1_Mus131363749	ProperStrand	1	chr9	31363974	31364074	Simple_repeat	(CAAAC)n	Simple_repeat	chr9(CAAAC)n31363983	ProperStrand	1	1	-inf
chr7	19092034	19093082	LINE	MusHAL1	L1	chr7MusHAL119091821	ProperStrand	2	chr17	39846818	39846841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr2	22744862	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	59076318	59076334	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	1	-9.0188
chr19	41770680	41770709	protein_coding	Slit1	intron	ENSMUSG00000025020	ProperStrand	30	chr2	32280797	32281747	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	1	-14.5120
chr11	102066541	102066572	protein_coding-noncoding	Hdac5	utr3	ENSMUSG00000008855	ProperStrand	3	chr19	3518340	3521763	protein_coding	Ppp6r3	exon	ENSMUSG00000024908	ProperStrand	213	1	-15.8356
chr17	39846432	39846499	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	34437589	34437762	protein_coding	Gm11158	intron	ENSMUSG00000079617	ProperStrand	2	1	-5.3533
chr9	17987798	17987836	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr1	131573942	131573973	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-8.0891
chr13	103294945	103295045	LINE	L2a	L2	chr13L2a103294922	ProperStrand	1	chr13	103295228	103295318	LINE	Lx8	L1	chr13Lx8103295151	NonProperStrand	1	1	-inf
chr12	54696898	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr1	180935343	180935431	protein_coding	Smyd3	intron	ENSMUSG00000055067	NonProperStrand	144	1	-8.6261
chr13	21780040	21780266	LINE	L1Md_T	L1	chr13L1Md_T21779280	ProperStrand	36	chr13	21780191	21780482	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	11	-inf
chr17	39847037	39847162	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	100100676	100106574	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n100106502	ProperStrand	5	1	-3.1907
chr1	97707683	97707711	LINE	L1Md_A	L1	chr1L1Md_A97706300	NonProperStrand	2	chr17	39846718	39846806	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	146261008	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	95708646	95708714	protein_coding	Cyp2j13	intron	ENSMUSG00000028571	NonProperStrand	17	1	-7.5728
chr6	83951959	83952059	LTR	MLT1B	MaLR	chr6MLT1B83951978	NonProperStrand	1	chr6	83951792	83951882	SINE	B3A	B2	chr6B3A83951804	ProperStrand	1	1	-inf
chr2	12155662	12155681	protein_coding	Itga8	intron	ENSMUSG00000026768	NonProperStrand	5	chr14	52008414	52008510	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-15.8283
chr18	17225259	17225349	lincRNA	1700001G01Rik	intron	ENSMUSG00000087170	NonProperStrand	8	chr18	21103154	21103254	protein_coding	Rnf125	utr5	ENSMUSG00000033107	ProperStrand	1	1	-inf
chr9	109989492	110012394	protein_coding-noncoding	Dhx30	utr3	ENSMUSG00000032480	NonProperStrand	5	chr9	109989288	110015908	protein_coding	Dhx30	intron	ENSMUSG00000032480	NonProperStrand	23	3	-22.1379
chr14	103313679	103313779	LINE	Lx4B	L1	chr14Lx4B103313097	NonProperStrand	1	chr14	103340938	103341028	Simple_repeat	(GGGA)n	Simple_repeat	chr14(GGGA)n103340879	NonProperStrand	1	1	-inf
chr14	54568848	54568938	LINE	L1Md_T	L1	chr14L1Md_T54567353	ProperStrand	34	chr4	132310269	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-10.8672
chr12	100868747	100868837	LTR	MTEa-int	MaLR	chr12MTEa-int100868710	NonProperStrand	7	chr12	100868847	100868947	SINE	PB1D9	Alu	chr12PB1D9100868844	ProperStrand	7	7	-inf
chr17	39847469	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	90255629	90255693	antisense	Gm16048	.	ENSMUSG00000087411	ProperStrand	9	2	-3.9821
chr17	28601431	28601495	protein_coding	Fkbp5	intron	ENSMUSG00000024222	ProperStrand	81	chr6	34900320	34900374	protein_coding	2010107G12Rik	intron	ENSMUSG00000029847	ProperStrand	21	1	-13.5477
chr17	91163923	91163944	protein_coding	Nrxn1	intron	ENSMUSG00000024109	ProperStrand	19	chr12	80499859	80499945	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-12.1736
chr2	98667238	98667328	LINE	L1Md_F2	L1	chr2L1Md_F298667138	NonProperStrand	7	chr6	118632741	118632841	protein_coding	Cacna1c	intron	ENSMUSG00000051331	NonProperStrand	17	1	-18.7319
chr11	68383517	68383557	LTR	RLTR11B	ERVK	chr11RLTR11B68383505	ProperStrand	1	chr9	123462020	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	105922647	105922663	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	chr9	123461827	123461849	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39846433	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	110395192	110395230	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110394425	NonProperStrand	4	1	-3.6552
chr6	51195468	51195558	LTR	RMER19B	ERVK	chr6RMER19B51195368	ProperStrand	1	chr6	51195257	51195357	SINE	B4	B4	chr6B451195228	ProperStrand	2	1	-inf
chr17	39885476	39885566	LTR	IAPEy-int	ERVK	chr17IAPEy-int39885090	NonProperStrand	1	chr17	39885568	39885668	LTR	IAPEy-int	ERVK	chr17IAPEy-int39885536	NonProperStrand	1	1	-inf
chr13	47088161	47088481	LTR	MTD	MaLR	chr13MTD47087868	ProperStrand	1	chr5	132521681	132521798	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-inf
chr4	16038865	16038886	LINE	Lx8	L1	chr4Lx816038746	NonProperStrand	2	mmu-miR-6238	2	22	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	1	-21.6660
chr12	80228741	80228774	LTR	MERVL-int	ERVL	chr12MERVL-int80224802	ProperStrand	30	chr6	93895971	93896041	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-7.6673
chr16	43584869	43584946	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr16	43623736	43623810	protein_coding	Zbtb20	utr3	ENSMUSG00000036279	ProperStrand	12	1	-11.9191
chr2	35693216	35693306	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	chr7	5098215	5098315	protein_coding	Vmn1r55	exon	ENSMUSG00000074402	NonProperStrand	1	1	-inf
chr4	135338059	135340559	protein_coding	Myom3	intron	ENSMUSG00000037139	NonProperStrand	91	chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.3224
chr11	120561226	120562238	antisense	Gm17178	.	ENSMUSG00000090758	ProperStrand	40	chr9	118674952	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.7740
chr5	146261025	146261054	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	99148579	99148598	protein_coding	Nhsl2	intron	ENSMUSG00000079481	NonProperStrand	3	1	-11.3685
chr9	48122803	48122903	LINE	L1MB2	L1	chr9L1MB248122124	ProperStrand	1	chr9	48123100	48123190	SINE	B3	B2	chr9B348123082	ProperStrand	1	1	-inf
chr5	146261022	146261075	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	120346412	120346506	protein_coding-noncoding	Mrpl12	utr5	ENSMUSG00000039640	NonProperStrand	20	1	-7.2424
chr9	19760844	19760944	LINE	L1Md_T	L1	chr9L1Md_T19760707	NonProperStrand	1	chr9	19760596	19760686	LTR	IAPEz-int	ERVK	chr9IAPEz-int19760179	NonProperStrand	1	1	-inf
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	79612519	79612619	protein_coding	Midn	utr5	ENSMUSG00000035621	NonProperStrand	3	1	-4.3017
chr17	46846953	46846997	lincRNA	Gm16736	intron	ENSMUSG00000086673	NonProperStrand	106	chr17	46836925	46836979	protein_coding	Ppp2r5d	intron	ENSMUSG00000059409	ProperStrand	16	1	-13.5684
chr5	146261265	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr17	28637502	28637592	protein_coding	Fkbp5	intron	ENSMUSG00000024222	NonProperStrand	5	1	-13.0367
chr17	34996994	34999407	protein_coding	Cfb	intron	ENSMUSG00000090231	ProperStrand	14	chr17	34996930	34999513	protein_coding	Gm20547	exon	ENSMUSG00000092511	ProperStrand	14	13	-19.3357
chr12	32830064	32830164	Low_complexity	GA-rich	Low_complexity	chr12GA-rich32830066	ProperStrand	2	chr12	32829958	32830048	SINE	B1_Mus1	Alu	chr12B1_Mus132829898	ProperStrand	3	2	-inf
chr18	67244035	67245385	LTR	RLTR9E	ERVK	chr18RLTR9E67243765	NonProperStrand	1	chr9	123462120	123462174	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	101347926	101348016	LINE	L1Md_F3	L1	chr8L1Md_F3101347916	NonProperStrand	1	chr8	101347385	101347485	LTR	ORR1C2-int	MaLR	chr8ORR1C2-int101347287	ProperStrand	1	1	-inf
chr15	80148108	80148126	protein_coding	Cacna1i	intron	ENSMUSG00000022416	ProperStrand	114	chr5	115272320	115272348	protein_coding	2610524H06Rik	utr3	ENSMUSG00000092486	ProperStrand	4	1	-16.4443
chr18	14651627	14651718	LINE	L1MA4	L1	chr18L1MA414651621	NonProperStrand	1	chr18	14666431	14666472	LTR	ORR1D1	MaLR	chr18ORR1D114666399	ProperStrand	1	1	-inf
chr5	63546413	63546513	LINE	L1Md_F2	L1	chr5L1Md_F263546407	ProperStrand	1	chr5	63546311	63546401	LINE	L1Md_F3	L1	chr5L1Md_F363541234	ProperStrand	1	1	-inf
chr11	6182009	6182077	LTR	RLTR20A	ERVK	chr11RLTR20A6181876	ProperStrand	3	chr11	6181716	6181745	SINE	B3A	B2	chr11B3A6181585	ProperStrand	1	1	-inf
chr10	80581503	80581622	protein_coding-noncoding	Map2k2	utr5	ENSMUSG00000035027	ProperStrand	1	chr10	80579487	80579514	protein_coding	Map2k2	intron	ENSMUSG00000035027	ProperStrand	3	1	-inf
chr14	66985773	66985800	LINE	L1M2	L1	chr14L1M266985614	NonProperStrand	1	chr17	39846759	39846813	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	146261044	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	2	-3.5998
chr17	39846952	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	90496426	90496474	LTR	MLT1E2	MaLR	chr2MLT1E290496335	NonProperStrand	1	1	-inf
chr17	39847348	39847373	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	76129020	76129063	SINE	B2_Mm2	B2	chrXB2_Mm276128910	ProperStrand	4	1	-3.7035
chr12	40410722	40410822	DNA	MER45C	Tip100	chr12MER45C40410635	NonProperStrand	6	chr3	91819805	91819895	protein_coding	Pglyrp3	intron	ENSMUSG00000042244	ProperStrand	1	1	-inf
chr15	97572693	97572751	SINE	MIR	MIR	chr15MIR97572648	ProperStrand	1	chr15	97578515	97578602	protein_coding	Rapgef3	intron	ENSMUSG00000022469	NonProperStrand	6	1	-inf
chr15	76891933	76892044	LTR	RLTR11A	ERVK	chr15RLTR11A76891518	NonProperStrand	4	chr1	39413891	39413909	protein_coding	Npas2	intron	ENSMUSG00000026077	ProperStrand	38	1	-18.8346
chr9	40310018	40311763	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	chr8	94180473	94180557	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	1	-6.4685
chr6	68551987	68552034	LINE	Lx5	L1	chr6Lx568551205	NonProperStrand	4	chr12	84233614	84233717	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	2	-inf
chr8	94172798	94173149	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	chr8	60644329	60644419	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-8.0068
chr2	167608013	167608058	lincRNA	Gm14321	exon	ENSMUSG00000084797	NonProperStrand	1	chr2	167608083	167608138	lincRNA	9230111E07Rik	exon	ENSMUSG00000087624	NonProperStrand	20	1	-inf
chr2	156301315	156301377	protein_coding-noncoding	Epb4.1l1	utr5	ENSMUSG00000027624	ProperStrand	1	chr2	156301049	156301121	protein_coding	Epb4.1l1	intron	ENSMUSG00000027624	ProperStrand	54	1	-inf
chr4	135562986	135563007	antisense	Gm13008	.	ENSMUSG00000085714	ProperStrand	13	chr8	25548807	25548923	lincRNA	Gm16625	intron	ENSMUSG00000084900	ProperStrand	52	1	-15.4299
chr10	59164808	59164898	LINE	Lx8	L1	chr10Lx859164815	NonProperStrand	2	chr11	76617910	76618010	protein_coding	Cpd	intron	ENSMUSG00000020841	ProperStrand	111	1	-18.1030
chr17	39847381	39847584	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	88602331	88603519	lincRNA	Gm11493	intron	ENSMUSG00000085646	ProperStrand	3	2	-8.1061
chr12	56764377	56764467	protein_coding	Ralgapa1	intron	ENSMUSG00000021027	NonProperStrand	8	chr12	53128828	53128928	protein_coding	Gpr33	utr5	ENSMUSG00000035148	ProperStrand	1	1	-inf
chr2	152149810	152149900	protein_coding-noncoding	Rbck1	utr3	ENSMUSG00000027466	NonProperStrand	12	chr2	152149990	152150090	protein_coding	Rbck1	exon	ENSMUSG00000027466	NonProperStrand	29	5	-20.1525
chr11	106782681	106784009	SINE	B3	B2	chr11B3106783834	NonProperStrand	1	chr10	75935951	75936273	protein_coding	Mcm3ap	intron	ENSMUSG00000001150	ProperStrand	37	1	-inf
chr8	104592844	104594001	LINE	L1VL4	L1	chr8L1VL4104591846	NonProperStrand	6	chr17	39847118	39847248	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-6.9321
chr18	77979924	77979982	DNA	MER2	MER2_type	chr18MER277979798	ProperStrand	2	chr7	122169762	122169806	SINE	MIR	MIR	chr7MIR122169698	ProperStrand	2	2	-inf
chr5	139453306	139453411	protein_coding	Pdgfa	intron	ENSMUSG00000025856	ProperStrand	29	chr17	84185227	84185243	protein_coding	Mta3	intron	ENSMUSG00000055817	NonProperStrand	65	1	-13.3336
chr15	81377573	81377645	SINE	B1_Mm	Alu	chr15B1_Mm81377522	NonProperStrand	1	chr4	106662467	106662550	protein_coding	Ssbp3	intron	ENSMUSG00000061887	NonProperStrand	25	1	-inf
chr10	52300305	52300373	LINE	L1Md_A	L1	chr10L1Md_A52300139	NonProperStrand	1	chr17	39847102	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	3946187	3946235	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	1	-4.5229
chr2	29630257	29630347	protein_coding-noncoding	Trub2	utr3	ENSMUSG00000039826	ProperStrand	1	chr2	29630007	29630107	protein_coding	Trub2	intron	ENSMUSG00000039826	ProperStrand	1	1	-inf
chr14	34747212	34747247	protein_coding	Gdf10	intron	ENSMUSG00000021943	ProperStrand	10	chr4	104367346	104367412	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	107	1	-14.5283
chr1	184101102	184101192	LTR	MT2B	ERVL	chr1MT2B184101000	NonProperStrand	1	chr1	184100645	184100745	LTR	RLTR45	ERVK	chr1RLTR45184100291	ProperStrand	1	1	-inf
chr1	9940616	9940706	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr2	63817469	63817569	protein_coding	Fign	exon	ENSMUSG00000075324	ProperStrand	77	1	-14.4854
chr12	67667929	67668029	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr14	33967598	33967688	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-10.2266
chr17	39848274	39848363	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	95784720	95784820	protein_coding	Wdr41	intron	ENSMUSG00000042015	NonProperStrand	12	1	-4.3503
chr2	102829379	102829449	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr10	105238419	105238466	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-10.5463
chr8	116638720	116638810	LTR	MLT1E1A	MaLR	chr8MLT1E1A116638697	NonProperStrand	1	chr8	116638623	116638723	SINE	B2_Mm2	B2	chr8B2_Mm2116638509	NonProperStrand	1	1	-inf
chr2	32376029	32376071	SINE	B3A	B2	chr2B3A32376021	ProperStrand	3	chr9	123461965	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr2	22744850	22744889	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr19	46309091	46309108	protein_coding	Gbf1	intron	ENSMUSG00000025224	ProperStrand	72	1	-6.4473
chr9	123461945	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	74948182	74948198	protein_coding	Acaa2	intron	ENSMUSG00000036880	NonProperStrand	7	3	-12.6843
chr13	23400792	23400831	lincRNA	4930557F10Rik	intron	ENSMUSG00000085488	ProperStrand	5	chr14	11868961	11868990	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-13.0328
chr11	71103036	71103126	LINE	L1_Mur3	L1	chr11L1_Mur371102958	NonProperStrand	1	chr11	71103240	71103340	LINE	L1_Mur3	L1	chr11L1_Mur371103247	ProperStrand	1	1	-inf
chr13	13996134	13996260	LINE	L1Md_F	L1	chr13L1Md_F13994824	ProperStrand	4	chr17	39846820	39846838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr8	40500543	40500609	LINE	L1Md_F3	L1	chr8L1Md_F340500002	NonProperStrand	1	chr13	44869592	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	24164496	24164597	Other	RMER1A	Other	chr17RMER1A24163704	ProperStrand	20	chr4	126192872	126192900	protein_coding-noncoding	Eif2c4	utr3	ENSMUSG00000042500	ProperStrand	1	1	-inf
chr2	129535960	129536050	LTR	MT2A	ERVL	chr2MT2A129535802	NonProperStrand	1	chr2	29112788	29112888	SINE	MIRc	MIR	chr2MIRc29112784	NonProperStrand	1	1	-inf
chr2	24182076	24182166	LTR	ETnERV2-int	ERVK	chr2ETnERV2-int24181837	NonProperStrand	1	chr9	44637552	44637652	protein_coding	Mll1	intron	ENSMUSG00000002028	ProperStrand	1	1	-inf
chr11	54933979	54934069	DNA	Tigger1	MER2_type	chr11Tigger154933997	NonProperStrand	8	chr11	54933869	54933969	LTR	ORR1C1	MaLR	chr11ORR1C154933839	ProperStrand	7	7	-inf
chr13	109925399	109925482	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr6	50121870	50121943	protein_coding	Mpp6	intron	ENSMUSG00000038388	ProperStrand	34	1	-9.1213
chr1	182846075	182846150	SINE	B4A	B4	chr1B4A182846024	NonProperStrand	1	chr17	39843503	39843580	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr1	65431447	65431547	protein_coding	Pth2r	intron	ENSMUSG00000025946	NonProperStrand	2	chr1	66847324	66847414	protein_coding	1110028C15Rik	intron	ENSMUSG00000026004	ProperStrand	12	1	-inf
chr11	3142686	3142775	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	73	chr17	56703660	56703699	protein_coding	Safb2	intron	ENSMUSG00000042625	NonProperStrand	49	1	-12.0369
chr4	33384163	33384256	LTR	MTE2a	MaLR	chr4MTE2a33384011	ProperStrand	1	chr6	39324600	39324640	protein_coding	Slc37a3	intron	ENSMUSG00000029924	ProperStrand	41	1	-inf
chr5	20534464	20534481	protein_coding	Ptpn12	intron	ENSMUSG00000028771	NonProperStrand	3	chr13	20424019	20424052	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	1	-15.8709
chr19	36839398	36839488	LTR	RLTR14	ERV1	chr19RLTR1436839401	ProperStrand	1	chr2	5379270	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr1	118639554	118639614	LINE	L1_Mur1	L1	chr1L1_Mur1118638449	ProperStrand	2	chr9	122626968	122627038	SINE	RSINE1	B4	chr9RSINE1122626973	NonProperStrand	1	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr9	31150369	31150399	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	1	-4.1761
chr2	22744835	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	64177915	64177968	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-3.8371
chr10	82649235	82649983	protein_coding	Chst11	intron	ENSMUSG00000034612	ProperStrand	39	chr10	42052727	42053507	protein_coding	Lace1	intron	ENSMUSG00000038302	ProperStrand	56	6	-20.3031
chr8	63084021	63084111	LTR	ETnERV3-int	ERVK	chr8ETnERV3-int63082351	ProperStrand	1	chr8	63084152	63084252	LTR	RLTR13A	ERVK	chr8RLTR13A63084139	ProperStrand	1	1	-inf
chr14	56734984	56735050	LINE	L1Md_F3	L1	chr14L1Md_F356728770	ProperStrand	10	chr6	67267365	67271229	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	1	-13.2244
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	79558203	79558303	protein_coding	Sbno2	intron	ENSMUSG00000035673	NonProperStrand	2	1	-5.3533
chr17	70963686	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	20588227	20588268	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-3.0092
chr11	105151632	105151662	SINE	B1F	Alu	chr11B1F105151627	NonProperStrand	1	chr11	105155088	105155108	protein_coding	Mrc2	intron	ENSMUSG00000020695	ProperStrand	48	1	-inf
mmu-miR-18a-5p	0	23	miRNA	mmu-miR-18a-5p	.	mmu-miR-18a-5p	ProperStrand	1	chr12	79814191	79814251	protein_coding	Fam71d	intron	ENSMUSG00000056987	ProperStrand	53	1	-inf
chr17	39847511	39847893	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	124935280	124935409	SINE	B1_Mur3	Alu	chr6B1_Mur3124935263	NonProperStrand	6	2	-5.2646
chr4	116637159	116637210	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	chr12	112959119	112959203	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	NonProperStrand	45	1	-10.8172
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr11	116732522	116732575	protein_coding	Mfsd11	intron	ENSMUSG00000020818	ProperStrand	1	1	-inf
chr13	112578206	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr5	114852118	114852151	protein_coding	Ube3b	intron	ENSMUSG00000029577	NonProperStrand	10	1	-7.7767
chr2	120507630	120507699	protein_coding	Stard9	intron	ENSMUSG00000033705	NonProperStrand	75	chr12	87108700	87108758	protein_coding	Mfsd7c	intron	ENSMUSG00000034258	NonProperStrand	17	1	-14.1366
chr1	159340359	159340424	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	57	chr16	23110847	23110934	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-11.9959
chr12	111895424	111895524	protein_coding-noncoding	Dync1h1	utr5	ENSMUSG00000018707	NonProperStrand	1	chr12	111895609	111895699	protein_coding	Dync1h1	intron	ENSMUSG00000018707	NonProperStrand	26	1	-inf
chr13	55223430	55223530	protein_coding-noncoding	Zfp346	utr5	ENSMUSG00000021481	ProperStrand	2	chr13	55223346	55223436	protein_coding	Zfp346	intron	ENSMUSG00000021481	ProperStrand	35	2	-inf
chr9	37511574	37511610	LINE	Lx4B	L1	chr9Lx4B37511549	NonProperStrand	18	chr12	3452846	3452964	protein_coding-noncoding	Asxl2	utr5	ENSMUSG00000037486	ProperStrand	3	1	-21.7122
chr11	98992444	98992471	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n98992296	NonProperStrand	1	chr9	104098614	104098657	protein_coding	Dnajc13	intron	ENSMUSG00000032560	NonProperStrand	9	1	-inf
chr16	35981615	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr9	65201724	65201838	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-8.9236
chr11	109011655	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	30070554	30070977	SINE	B1_Mus1	Alu	chr2B1_Mus130070858	NonProperStrand	4	1	-11.7441
chr5	35645370	35645460	LINE	L1M4	L1	chr5L1M435645274	NonProperStrand	1	chr5	35644816	35644916	LINE	L1MD	L1	chr5L1MD35644622	NonProperStrand	1	1	-inf
chr13	90095710	90095753	protein_coding	Xrcc4	intron	ENSMUSG00000021615	ProperStrand	57	chr2	157194494	157194547	protein_coding	Manbal	intron	ENSMUSG00000063019	NonProperStrand	4	1	-18.0180
chrX	71560134	71560172	protein_coding	Fam50a	intron	ENSMUSG00000001962	ProperStrand	1	chr12	41052946	41053055	protein_coding	Zfp277	intron	ENSMUSG00000055917	NonProperStrand	75	1	-inf
chr13	9834306	9834372	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr10	122054942	122055007	SINE	ID_B1	B4	chr10ID_B1122054903	NonProperStrand	1	1	-inf
chr6	113585156	113585256	SINE	B1_Mur1	Alu	chr6B1_Mur1113585130	ProperStrand	2	chr6	113585008	113585098	SINE	B3	B2	chr6B3113584910	ProperStrand	2	2	-inf
chrX	73966115	73966167	LINE	L1VL1	L1	chrXL1VL173965763	NonProperStrand	46	chr1	134631809	134631862	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	1	-9.9255
chr11	20016680	20016780	Other	RMER1B	Other	chr11RMER1B20016695	ProperStrand	2	chr11	20016567	20016657	SINE	B1_Mus2	Alu	chr11B1_Mus220016514	NonProperStrand	1	1	-inf
chr1	100180182	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chrX	12801863	12801894	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	1	-10.9521
chr5	123741857	123741903	protein_coding	Wdr66	intron	ENSMUSG00000029442	NonProperStrand	48	chr17	56312964	56313109	protein_coding	Tnfaip8l1	utr3	ENSMUSG00000044469	ProperStrand	56	1	-12.6115
chr15	74478983	74479073	SINE	B3	B2	chr15B374478937	ProperStrand	1	chr11	116400552	116400652	protein_coding	Ube2o	exon	ENSMUSG00000020802	ProperStrand	3	1	-inf
chr12	36196250	36196318	protein_coding	Ahr	intron	ENSMUSG00000019256	NonProperStrand	8	chr9	56223576	56223654	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-12.6336
chr9	69708682	69708699	DNA	Arthur1B	Tip100	chr9Arthur1B69708663	NonProperStrand	1	chr9	123461954	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	122922034	122922095	LINE	L1Md_T	L1	chr14L1Md_T122920199	ProperStrand	3	chr15	83149685	83149736	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-16.7409
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	64770891	64770927	LTR	RMER16-int	ERVK	chr8RMER16-int64770116	NonProperStrand	1	1	-inf
chr11	108714199	108714277	protein_coding	Ccdc46	intron	ENSMUSG00000020728	ProperStrand	50	chr1	74143562	74143581	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	1	-11.8884
chr10	40258522	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	3	-4.6430
chr17	39846419	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	80524729	80524852	LTR	RLTR11B	ERVK	chr2RLTR11B80524558	ProperStrand	3	2	-8.0300
chr17	39847797	39847842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	64196259	64196290	SINE	PB1D7	Alu	chr9PB1D764196191	ProperStrand	2	2	-inf
chr5	146261174	146261217	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	4097352	4097439	protein_coding	Cdk2ap2	utr5	ENSMUSG00000024856	ProperStrand	1	1	-inf
chr7	51897319	51897350	protein_coding	Myh14	intron	ENSMUSG00000030739	NonProperStrand	9	chr7	51993359	51993393	protein_coding	Zfp473	exon	ENSMUSG00000048012	NonProperStrand	2	1	-20.8824
chr1	119478117	119483549	LINE	L1_Mm	L1	chr1L1_Mm119481631	NonProperStrand	1	chr17	39846656	39846749	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	122357166	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr17	70963679	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	2	-5.5506
chr11	22281988	22282009	LINE	Lx8	L1	chr11Lx822281455	ProperStrand	1	chr17	39847178	39847209	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	101511167	101511257	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int101510134	NonProperStrand	4	chr4	3819547	3819647	LTR	MT2A	ERVL	chr4MT2A3819460	ProperStrand	1	1	-inf
chr6	3201517	3201565	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	14862331	14862348	antisense	Gm11837	.	ENSMUSG00000086587	ProperStrand	8	1	-6.8272
chr8	67982557	67982577	LINE	L1Md_T	L1	chr8L1Md_T67977817	ProperStrand	1	chr9	40803582	40803652	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr18	87650421	87650487	LINE	L1M3e	L1	chr18L1M3e87650359	NonProperStrand	1	chr17	39848242	39848317	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr10	44389399	44389451	DNA	MER58B	MER1_type	chr10MER58B44389156	NonProperStrand	1	chr17	39847645	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	24315489	24315550	LINE	L1Md_F2	L1	chr7L1Md_F224311974	NonProperStrand	4	chr1	177270019	177270037	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	1	-17.0150
chr14	21515073	21515157	protein_coding	Fut11	exon	ENSMUSG00000039357	ProperStrand	28	chr14	21508718	21508770	protein_coding	Sec24c	intron	ENSMUSG00000039367	ProperStrand	81	1	-12.9609
chr7	110548181	110548250	LINE	L1_Mur2	L1	chr7L1_Mur2110547963	NonProperStrand	2	chr7	110549292	110549332	LINE	L1_Mur2	L1	chr7L1_Mur2110549259	NonProperStrand	2	1	-19.8939
chr16	59565696	59565790	processed_transcript	Gm9581	.	ENSMUSG00000091562	ProperStrand	3	chr1	52187688	52187710	protein_coding	Stat1	intron	ENSMUSG00000026104	NonProperStrand	47	1	-18.8988
chr7	11873347	11873447	LTR	RLTR10-int	ERVK	chr7RLTR10-int11872897	NonProperStrand	1	chr9	19657718	19657808	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr7	137015299	137015399	SINE	B4A	B4	chr7B4A137015285	NonProperStrand	3	chr7	137015150	137015240	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n137015117	ProperStrand	3	3	-inf
chr10	82804272	82804299	LTR	MTD	MaLR	chr10MTD82804007	NonProperStrand	1	chr17	39847736	39847813	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	chr3	94880168	94880263	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	NonProperStrand	30	1	-14.0524
chr17	39847313	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	74219440	74219531	protein_coding	Mapk4	intron	ENSMUSG00000024558	NonProperStrand	22	2	-3.0362
chr14	12131445	12131516	LINE	L1Md_F	L1	chr14L1Md_F12129925	ProperStrand	1	chr14	12123933	12124003	LINE	L1_Mus2	L1	chr14L1_Mus212121999	ProperStrand	1	1	-inf
chr17	39847509	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	118989615	118989687	LTR	RLTR15	ERVK	chr1RLTR15118989585	NonProperStrand	5	1	-3.2379
chr5	33534011	33534070	LINE	L1Md_F2	L1	chr5L1Md_F233533958	NonProperStrand	1	chr5	33501925	33502001	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	1	-inf
chr17	39842998	39843052	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr5	121206673	121206702	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-3.3698
chr19	13074964	13074982	SINE	B1_Mus1	Alu	chr19B1_Mus113074929	NonProperStrand	4	chr1	74475095	74478101	protein_coding	Vil1	intron	ENSMUSG00000026175	NonProperStrand	13	1	-inf
chr10	128492648	128493851	LINE	L1Md_F	L1	chr10L1Md_F128491087	ProperStrand	14	chr17	39847611	39847879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-4.4446
chr17	32318540	32318664	SINE	B1_Mus1	Alu	chr17B1_Mus132318575	NonProperStrand	1	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-inf
chr3	69448223	69448313	LTR	IAPEz-int	ERVK	chr3IAPEz-int69442230	NonProperStrand	3	chr3	69448619	69448719	LTR	IAPLTR1_Mm	ERVK	chr3IAPLTR1_Mm69448628	NonProperStrand	1	1	-inf
chr11	78182856	78182959	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr9	108315392	108315426	protein_coding	Ccdc36	intron	ENSMUSG00000047220	NonProperStrand	33	1	-12.3073
chr1	161035400	161035457	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chrX	38447718	38447761	LINE	L1Md_A	L1	chrXL1Md_A38447590	NonProperStrand	8	1	-16.5727
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr4	43492784	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-6.7036
chr13	62044133	62044263	LTR	ETnERV3-int	ERVK	chr13ETnERV3-int62042747	ProperStrand	2	chr15	12180655	12180672	protein_coding	Mtmr12	intron	ENSMUSG00000039458	NonProperStrand	9	1	-inf
chr2	32692477	32692688	protein_coding	Stxbp1	intron	ENSMUSG00000026797	ProperStrand	48	chr1	132508081	132508101	protein_coding	Zp3r	intron	ENSMUSG00000042554	NonProperStrand	56	1	-12.6115
chr5	139225312	139225339	LINE	L1M4	L1	chr5L1M4139225081	NonProperStrand	1	chr17	39846817	39846854	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	71518143	71518259	LTR	MT2A	ERVL	chr11MT2A71517959	NonProperStrand	1	chr11	71517348	71517387	lincRNA	Gm12325	intron	ENSMUSG00000085659	ProperStrand	1	1	-inf
chr18	32080524	32083312	LTR	MTC	MaLR	chr18MTC32080422	ProperStrand	2	chr18	32080331	32080421	Low_complexity	GA-rich	Low_complexity	chr18GA-rich32080250	ProperStrand	1	1	-inf
chr18	61306155	61306245	protein_coding	Hmgxb3	intron	ENSMUSG00000024622	ProperStrand	18	chr10	41534467	41534567	protein_coding	Sesn1	intron	ENSMUSG00000038332	ProperStrand	16	2	-inf
chr1	138734241	138734341	LINE	L1Md_F3	L1	chr1L1Md_F3138733900	NonProperStrand	1	chr1	138733728	138733818	LTR	MTE2a	MaLR	chr1MTE2a138733657	ProperStrand	2	1	-inf
chr1	118881038	118881126	LINE	Lx	L1	chr1Lx118881040	ProperStrand	1	chr17	39847551	39847612	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	4357273	4357362	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr10	4358541	4358572	LINE	L1_Mus2	L1	chr10L1_Mus24357960	NonProperStrand	20	1	-11.9913
chr17	39847864	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	23355566	23355629	protein_coding-noncoding	Wdr44	utr5	ENSMUSG00000036769	NonProperStrand	1	1	-inf
chr15	77447745	77447835	LTR	LTRIS_Mus	ERV1	chr15LTRIS_Mus77447646	ProperStrand	1	chr15	77448804	77448904	LTR	RLTR14	ERV1	chr15RLTR1477448572	ProperStrand	1	1	-inf
chr3	144509001	144509063	protein_coding	Clca4	intron	ENSMUSG00000037033	ProperStrand	58	chr3	144543238	144543292	protein_coding	Gm6289	intron	ENSMUSG00000074196	ProperStrand	31	1	-13.4269
chr12	67665548	67665566	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr13	97190561	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.5678
chr17	25909411	25909514	LINE	L1MB8	L1	chr17L1MB825909340	ProperStrand	1	chr17	25905858	25905904	LTR	MLT1B	MaLR	chr17MLT1B25905823	NonProperStrand	3	1	-inf
chr3	107440077	107440132	LINE	Lx9	L1	chr3Lx9107439797	NonProperStrand	1	chr9	64177907	64177952	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-inf
chr17	39843023	39843061	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr4	132310302	132310350	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-3.2201
chr2	102829375	102829445	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr7	127199152	127199223	protein_coding	Dnahc3	intron	ENSMUSG00000052273	NonProperStrand	37	1	-10.8500
chr7	141632066	141632156	DNA	Charlie1a	MER1_type	chr7Charlie1a141631351	ProperStrand	11	chr7	141632152	141632252	LINE	L1MB3	L1	chr7L1MB3141632176	ProperStrand	7	6	-inf
chr11	4531229	4531276	LTR	ORR1D2	MaLR	chr11ORR1D24531049	NonProperStrand	1	chr11	4528319	4531224	antisense	Gm11961	.	ENSMUSG00000056288	ProperStrand	2	1	-inf
chr17	39847026	39847044	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	52744763	52744787	LTR	ETnERV3-int	ERVK	chrXETnERV3-int52744464	NonProperStrand	1	1	-inf
chr17	39846817	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	108254065	108254144	Simple_repeat	(GGAA)n	Simple_repeat	chr12(GGAA)n108254086	NonProperStrand	2	1	-5.3533
chr8	106627528	106627580	protein_coding	Cdh5	intron	ENSMUSG00000031871	ProperStrand	143	chr5	108582848	108582952	protein_coding	Ccdc18	intron	ENSMUSG00000056531	NonProperStrand	57	1	-10.3824
chr13	115458288	115458388	LINE	Lx4A	L1	chr13Lx4A115455895	ProperStrand	1	chr13	115458513	115458603	LTR	RMER19B	ERVK	chr13RMER19B115458507	NonProperStrand	1	1	-inf
chr19	8726067	8726155	SINE	B3	B2	chr19B38726082	ProperStrand	1	chr14	61631934	61631959	protein_coding	Tnfrsf19	intron	ENSMUSG00000060548	ProperStrand	20	1	-inf
chr9	123462077	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	23934691	23934707	protein_coding	Slc17a3	intron	ENSMUSG00000036083	NonProperStrand	4	1	-6.3300
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr18	80279489	80279518	protein_coding	Pard6g	intron	ENSMUSG00000056214	ProperStrand	48	1	-8.2953
chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	76432886	76432968	SINE	B4A	B4	chr10B4A76432783	ProperStrand	1	1	-inf
chr13	90924397	90924587	SINE	ID_B1	B4	chr13ID_B190924530	NonProperStrand	8	chrX	56448168	56448258	protein_coding	Fgf13	intron	ENSMUSG00000031137	ProperStrand	21	1	-18.3864
chr12	78226695	78226809	LTR	MLT1B	MaLR	chr12MLT1B78226543	ProperStrand	2	chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr1	27819789	27819809	LINE	L1_Mus3	L1	chr1L1_Mus327819633	NonProperStrand	3	chr12	78350931	78351060	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-12.2277
chr11	93909346	93909384	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	chr1	178948401	178948483	protein_coding	Sdccag8	intron	ENSMUSG00000026504	NonProperStrand	9	1	-15.3456
chr14	47298331	47308571	SINE	B3A	B2	chr14B3A47298248	NonProperStrand	2	chr9	123461957	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr14	18785603	18785684	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr5	30111515	30111534	protein_coding	Dnajb6	intron	ENSMUSG00000029131	NonProperStrand	15	1	-12.7767
chr13	44872271	44872361	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	chr16	5148908	5149008	protein_coding	Sec14l5	intron	ENSMUSG00000091712	ProperStrand	3	1	-15.2027
chr4	150266651	150266726	LTR	MTD-int	MaLR	chr4MTD-int150266087	NonProperStrand	4	chr12	100509362	100509444	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	1	-16.0670
chr12	85030242	85054497	protein_coding	Psen1	intron	ENSMUSG00000019969	ProperStrand	26	chr9	123461977	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.5840
chr11	109011793	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	62604522	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	1	-6.9038
chr2	130590477	130590494	protein_coding	4930402H24Rik	intron	ENSMUSG00000027309	ProperStrand	117	chr9	78480387	78480567	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-6.1845
chr2	29955630	29957781	protein_coding-noncoding	Zer1	utr3	ENSMUSG00000039686	NonProperStrand	8	chr2	29958453	29958553	protein_coding	Zer1	intron	ENSMUSG00000039686	NonProperStrand	19	7	-21.0140
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	90395155	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-4.5704
chr8	78534079	78534119	LINE	L1_Mus3	L1	chr8L1_Mus378534019	ProperStrand	2	chr11	83965455	83965508	protein_coding	Acaca	intron	ENSMUSG00000020532	ProperStrand	53	1	-19.2441
chr1	89717384	89721131	protein_coding-noncoding	Sag	utr5	ENSMUSG00000056055	ProperStrand	18	chr1	89720412	89721013	protein_coding	Sag	intron	ENSMUSG00000056055	ProperStrand	125	2	-20.5217
chr13	107248802	107248819	LINE	Lx3_Mus	L1	chr13Lx3_Mus107248144	ProperStrand	3	chr17	39847813	39847958	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr15	96232858	96232874	protein_coding	Arid2	utr3	ENSMUSG00000033237	ProperStrand	28	chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.9804
chr9	123461886	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	115777205	115777295	protein_coding	Rad54l	intron	ENSMUSG00000028702	NonProperStrand	23	2	-4.9293
chr5	146261164	146261205	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	98957096	98957112	protein_coding	Pik3cb	intron	ENSMUSG00000032462	ProperStrand	11	1	-8.4703
chr13	98908504	98908527	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr13	51781952	51782038	protein_coding	Gm15440	intron	ENSMUSG00000051107	ProperStrand	23	1	-12.2639
chr5	70821358	70821458	LINE	L1Md_T	L1	chr5L1Md_T70814798	NonProperStrand	1	chr7	5409577	5409667	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	1	-inf
chr16	96122263	96122313	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	ProperStrand	119	chr15	7172971	7173417	protein_coding	Egflam	intron	ENSMUSG00000042961	NonProperStrand	61	1	-10.6138
chr19	42015280	42015344	protein_coding	Zdhhc16	intron	ENSMUSG00000025157	ProperStrand	27	chr5	73543821	73543856	protein_coding	Fryl	intron	ENSMUSG00000070733	NonProperStrand	82	1	-13.0103
chr4	104518883	104518928	protein_coding	C8a	intron	ENSMUSG00000035031	NonProperStrand	68	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-13.0412
chr2	71814713	71814742	LTR	MLT2B2	ERVL	chr2MLT2B271814473	ProperStrand	1	chr2	71815251	71815340	LTR	ORR1A3	MaLR	chr2ORR1A371815200	ProperStrand	1	1	-inf
chr11	3430813	3430918	protein_coding	Smtn	intron	ENSMUSG00000020439	ProperStrand	6	chrX	109506465	109506507	protein_coding	Satl1	intron	ENSMUSG00000025527	ProperStrand	1	1	-inf
chr5	64824846	64824866	SINE	ID4	ID	chr5ID464824785	NonProperStrand	1	chr4	140137841	140137900	protein_coding	Arhgef10l	intron	ENSMUSG00000040964	NonProperStrand	15	1	-inf
chr18	31902618	31902636	SINE	B1_Mus2	Alu	chr18B1_Mus231902569	ProperStrand	1	chr11	60205908	60206020	protein_coding	Lrrc48	intron	ENSMUSG00000056598	NonProperStrand	40	1	-inf
chr9	123462053	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	3704339	3705788	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	64	3	-3.6620
chr9	123461990	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	38293076	38295094	protein_coding	Zc3hav1	intron	ENSMUSG00000029826	ProperStrand	6	1	-5.4370
chr8	72777059	72777108	protein_coding-noncoding	Sugp2	utr5	ENSMUSG00000036054	NonProperStrand	2	chr1	181989105	181989201	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	2	-inf
chr10	67119317	67119407	SINE	B1_Mus2	Alu	chr10B1_Mus267119303	NonProperStrand	3	chr10	67119423	67119523	SINE	B2_Mm2	B2	chr10B2_Mm267119445	NonProperStrand	7	3	-inf
chr17	39847279	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	38158113	38158141	snoRNA	ENSMUSG00000077530_SNORA17	.	ENSMUSG00000077530	ProperStrand	1	1	-inf
chr5	149229285	149229304	LINE	L1M4b	L1	chr5L1M4b149229205	NonProperStrand	1	chr17	35152626	35152724	protein_coding	Vars	exon	ENSMUSG00000007029	NonProperStrand	53	1	-inf
chr5	33531004	33531064	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr5	33528301	33528389	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm33527939	NonProperStrand	14	1	-13.9779
chr1	26992389	26992479	LINE	L1Md_F2	L1	chr1L1Md_F226992221	NonProperStrand	1	chr1	26992475	26992575	LINE	L1Md_F2	L1	chr1L1Md_F226992454	ProperStrand	1	1	-inf
chr1	58475501	58475561	protein_coding	Clk1	intron	ENSMUSG00000026034	ProperStrand	6	chr3	86121136	86123176	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-15.1211
chr17	3241890	3241906	LTR	MTE2b	MaLR	chr17MTE2b3241843	ProperStrand	1	chr15	47539994	47540128	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-inf
chr7	115881848	115881891	LINE	Lx5	L1	chr7Lx5115881832	NonProperStrand	1	chr7	115889979	115890069	LTR	RMER19B	ERVK	chr7RMER19B115890005	NonProperStrand	1	1	-inf
chr6	3201499	3201519	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	108575703	108575763	protein_coding	Slc25a20	intron	ENSMUSG00000032602	NonProperStrand	38	1	-3.7289
mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	12	chr5	4967812	4967831	protein_coding	Cdk14	intron	ENSMUSG00000028926	ProperStrand	13	1	-18.6827
chr11	68202338	68202428	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	chr11	95677266	95677366	protein_coding	Zfp652	intron	ENSMUSG00000075595	ProperStrand	82	1	-8.6268
chr17	39847428	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	103672566	103672709	protein_coding	Fndc3c1	intron	ENSMUSG00000033737	NonProperStrand	7	3	-7.4178
chr8	114801227	114801305	SINE	B3A	B2	chr8B3A114801202	ProperStrand	2	chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	1	-20.0295
chr17	46028575	46028601	DNA	URR1B	MER1_type	chr17URR1B46028551	NonProperStrand	2	chr17	46029736	46029858	LTR	MTD	MaLR	chr17MTD46029415	ProperStrand	5	2	-inf
chr1	153265099	153265220	protein_coding-noncoding	1200016B10Rik	utr3	ENSMUSG00000052748	ProperStrand	3	chr1	153272539	153272569	protein_coding	1200016B10Rik	intron	ENSMUSG00000052748	ProperStrand	80	1	-17.8877
chr15	58933381	58933399	LTR	RLTR14	ERV1	chr15RLTR1458933384	NonProperStrand	4	chr2	32963283	32963415	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	2	-inf
chr5	146260994	146261071	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	70061541	70061606	protein_coding	Nat3	intron	ENSMUSG00000056426	ProperStrand	38	1	-5.9575
chr10	83367368	83367389	DNA	MER58A	MER1_type	chr10MER58A83367309	NonProperStrand	1	chr10	83366610	83366717	Simple_repeat	(TCTCC)n	Simple_repeat	chr10(TCTCC)n83366522	ProperStrand	4	1	-inf
chr4	43492784	43492812	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr11	75504692	75504807	protein_coding	Crk	intron	ENSMUSG00000017776	ProperStrand	72	1	-6.7310
chr2	180034782	180034844	SINE	B4	B4	chr2B4180034792	NonProperStrand	8	chr16	62861181	62861249	protein_coding	Pros1	intron	ENSMUSG00000022912	ProperStrand	29	1	-17.5346
chr6	121100168	121100258	DNA	URR1A	MER1_type	chr6URR1A121100139	ProperStrand	3	chr6	121100052	121100152	SINE	B3A	B2	chr6B3A121100023	NonProperStrand	3	3	-inf
chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	chr6	97855789	97855820	protein_coding	Mitf	intron	ENSMUSG00000035158	ProperStrand	50	1	-13.0168
chr2	59671312	59671393	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	chr5	22496317	22496357	protein_coding	Lhfpl3	intron	ENSMUSG00000058361	NonProperStrand	52	1	-10.5813
chr3	86862221	86862321	LINE	L1M2	L1	chr3L1M286862102	ProperStrand	1	chr3	86861927	86862017	LTR	MTD	MaLR	chr3MTD86861893	NonProperStrand	1	1	-inf
chr14	12493840	12493862	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	30	chr13	44869594	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.8435
chr15	53258634	53258693	LINE	Lx9	L1	chr15Lx953258442	NonProperStrand	1	chr15	53303780	53303868	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-inf
chr10	23785753	23785819	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr8	70018907	70018963	protein_coding	Nat2	utr5	ENSMUSG00000051147	NonProperStrand	23	1	-11.9962
chr9	106430322	106431108	LINE	Lx8	L1	chr9Lx8106430222	NonProperStrand	4	chr5	3708002	3708102	protein_coding	Ankib1	intron	ENSMUSG00000040351	ProperStrand	49	2	-inf
chr10	17124520	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-9.5861
chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	chr2	41344451	41344468	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-13.2648
chr13	37858462	37858552	SINE	ID_B1	B4	chr13ID_B137858463	ProperStrand	2	chr4	137640112	137640212	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	2	-inf
chr10	48061679	48061769	LTR	MERVK26-int	ERVK	chr10MERVK26-int48061641	ProperStrand	1	chr10	48062101	48062201	LTR	RMER20B	ERVK	chr10RMER20B48061837	ProperStrand	1	1	-inf
chr17	39846750	39846812	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	65255260	65255312	protein_coding	Rasl12	intron	ENSMUSG00000041696	ProperStrand	1	1	-inf
chr14	18203669	18203734	LINE	L1VL4	L1	chr14L1VL418203231	ProperStrand	1	chr14	18205503	18205550	SINE	PB1	Alu	chr14PB118205440	NonProperStrand	1	1	-inf
chr5	74216966	74217056	LINE	Lx8	L1	chr5Lx874216978	ProperStrand	1	chr5	74216859	74216959	SINE	B2_Mm2	B2	chr5B2_Mm274216794	NonProperStrand	1	1	-inf
chr11	37177678	37177778	Low_complexity	A-rich	Low_complexity	chr11A-rich37177688	ProperStrand	1	chr11	37177551	37177641	SINE	RSINE1	B4	chr11RSINE137177484	ProperStrand	1	1	-inf
chr17	39845991	39846083	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr6	49260343	49260364	SINE	B1_Mm	Alu	chr6B1_Mm49260255	NonProperStrand	1	1	-inf
chr13	44869573	44869672	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr16	32381778	32381818	protein_coding	Ubxn7	intron	ENSMUSG00000053774	ProperStrand	53	1	-4.7306
chr3	68581613	68581713	LTR	MTB	MaLR	chr3MTB68581624	NonProperStrand	1	chr3	68581512	68581602	LTR	RLTR13C1	ERVK	chr3RLTR13C168581455	ProperStrand	1	1	-inf
chr11	115822279	115822407	protein_coding	Sap30bp	intron	ENSMUSG00000020755	ProperStrand	28	chr9	110281288	110281323	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	2	-14.4479
chr4	150360970	150361060	LTR	RLTR10	ERVK	chr4RLTR10150360958	ProperStrand	2	chr4	150361074	150361174	SINE	B3	B2	chr4B3150361094	ProperStrand	2	2	-inf
chr13	65533380	65533445	lincRNA	Gm7782	intron	ENSMUSG00000090514	NonProperStrand	4	chr13	44869590	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.0813
chr17	39847338	39848065	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	114851974	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	26	-5.4905
chr17	39847767	39847818	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	122315427	122316134	LTR	RMER17C	ERVK	chr6RMER17C122315788	ProperStrand	3	1	-4.3512
chr9	47597050	47597948	protein_coding-noncoding	Cadm1	utr5	ENSMUSG00000032076	ProperStrand	14	chr9	47593871	47597887	protein_coding	Cadm1	exon	ENSMUSG00000032076	ProperStrand	210	2	-19.0416
chr15	11407270	11407360	LINE	L1MCa	L1	chr15L1MCa11407173	ProperStrand	2	chr15	11406871	11406971	LINE	Lx8	L1	chr15Lx811406862	ProperStrand	2	2	-inf
chr11	8658381	8658481	LINE	L1MA5A	L1	chr11L1MA5A8658067	NonProperStrand	1	chr11	8658514	8658604	LTR	RLTR13D6	ERVK	chr11RLTR13D68658474	NonProperStrand	1	1	-inf
chr17	46683714	46683814	lincRNA	Gm16736	intron	ENSMUSG00000086673	NonProperStrand	106	chr17	46683863	46683953	protein_coding	Srf	utr3	ENSMUSG00000015605	ProperStrand	13	8	-inf
chr9	89075646	89075744	LINE	L1_Mur3	L1	chr9L1_Mur389075608	ProperStrand	1	chr9	88598110	88598200	protein_coding	Gm2382	intron	ENSMUSG00000079427	ProperStrand	5	1	-inf
chr17	39847174	39847270	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	120342409	120342427	protein_coding	Clasp1	intron	ENSMUSG00000064302	ProperStrand	3	1	-5.4882
chr17	26081271	26081360	protein_coding	Pigq	intron	ENSMUSG00000025728	ProperStrand	31	chr6	140537780	140537880	protein_coding	Plekha5	intron	ENSMUSG00000030231	NonProperStrand	2	1	-20.3967
chr11	75355325	75355415	protein_coding	Slc43a2	intron	ENSMUSG00000038178	NonProperStrand	3	chr11	75356507	75356607	protein_coding	Slc43a2	intron	ENSMUSG00000038178	ProperStrand	19	1	-19.2235
chr15	25381936	25381965	DNA	URR1B	MER1_type	chr15URR1B25381808	ProperStrand	1	chr15	25382179	25382218	SINE	B3	B2	chr15B325382159	ProperStrand	1	1	-inf
chr1	171237245	171238008	SINE	B1_Mus2	Alu	chr1B1_Mus2171237917	NonProperStrand	2	chr5	114852005	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-16.7741
chr9	5559970	5560070	LINE	L1_Mur1	L1	chr9L1_Mur15559612	ProperStrand	1	chr9	5560177	5560267	LINE	Lx7	L1	chr9Lx75560172	ProperStrand	1	1	-inf
chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	155074866	155074951	SINE	B1_Mus1	Alu	chr4B1_Mus1155074869	NonProperStrand	1	1	-inf
chr7	16525947	16525983	protein_coding	Gltscr2	intron	ENSMUSG00000041560	ProperStrand	11	chr7	16540228	16540331	protein_coding	Ehd2	intron	ENSMUSG00000074364	ProperStrand	15	1	-18.2570
chr4	130537969	130538031	lincRNA	Gm12973	intron	ENSMUSG00000085804	NonProperStrand	45	chr6	88465585	88465637	protein_coding-noncoding	Sec61a1	utr3	ENSMUSG00000030082	NonProperStrand	1	1	-inf
chr5	120155440	120155497	SINE	RSINE1	B4	chr5RSINE1120155363	NonProperStrand	1	chr12	85122033	85122116	protein_coding	Papln	intron	ENSMUSG00000021223	ProperStrand	20	1	-inf
chr3	97233913	97234013	LTR	RLTR33	ERVK	chr3RLTR3397233864	NonProperStrand	1	chr3	97233783	97233873	LTR	RMER4B	ERVK	chr3RMER4B97233592	NonProperStrand	1	1	-inf
chr12	110807355	110807392	lincRNA	Gm17639	exon	ENSMUSG00000090521	ProperStrand	5	chr5	123424233	123424280	protein_coding	Kdm2b	intron	ENSMUSG00000029475	NonProperStrand	97	1	-16.2325
chr4	11057393	11057454	LTR	MTD	MaLR	chr4MTD11057149	NonProperStrand	1	chr7	102009314	102009385	SINE	B3A	B2	chr7B3A102009288	ProperStrand	2	1	-inf
chr5	28418962	28419062	SINE	B2_Mm2	B2	chr5B2_Mm228418988	NonProperStrand	4	chr5	28418791	28418881	SINE	B3A	B2	chr5B3A28418804	ProperStrand	4	4	-inf
chrX	102188306	102188370	LINE	L1ME3A	L1	chrXL1ME3A102188289	NonProperStrand	1	chr17	39847736	39847822	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	22744837	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr19	8724250	8724326	SINE	B1F	Alu	chr19B1F8724255	ProperStrand	9	2	-16.9670
chr19	5796874	5796975	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr7	119883627	119883688	protein_coding	Tead1	intron	ENSMUSG00000055320	NonProperStrand	51	1	-4.7510
chr2	30349067	30349157	SINE	B3	B2	chr2B330349089	ProperStrand	1	chr2	30349473	30349573	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n30349435	NonProperStrand	2	1	-inf
chr2	22744838	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	112772968	112772986	protein_coding	Ryr3	intron	ENSMUSG00000057378	NonProperStrand	77	1	-6.3148
chr5	127219344	127219444	LTR	MER68	ERVL	chr5MER68127219243	NonProperStrand	1	chr5	127219620	127219710	Low_complexity	GA-rich	Low_complexity	chr5GA-rich127219472	NonProperStrand	1	1	-inf
chr2	22744838	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	100406915	100406984	protein_coding	Ttc25	utr5	ENSMUSG00000006784	NonProperStrand	9	1	-10.6765
chr11	109011749	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	2	-10.1722
chr4	53860727	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr9	107962179	107962248	protein_coding	Rnf123	intron	ENSMUSG00000041528	NonProperStrand	29	1	-10.8950
chr4	146934592	146934627	protein_coding	Gm13154	intron	ENSMUSG00000065999	ProperStrand	5	chr4	146477678	146935166	pseudogene	Gm13142	.	ENSMUSG00000081405	ProperStrand	2	1	-23.2669
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr4	57205908	57206229	protein_coding	Ptpn3	utr3	ENSMUSG00000038764	ProperStrand	95	1	-9.6746
chr17	39847174	39847203	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	69746403	69746766	SINE	PB1D9	Alu	chr11PB1D969746685	NonProperStrand	1	1	-inf
chr1	55080134	55080161	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	chr2	104060680	104060696	protein_coding	D430041D05Rik	intron	ENSMUSG00000068373	ProperStrand	7	1	-17.5331
chr6	28631157	28631244	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr4	140710358	140710424	protein_coding	Fbxo42	intron	ENSMUSG00000028920	ProperStrand	227	1	-3.9609
chr15	84204056	84206921	LINE	L1MD1	L1	chr15L1MD184204522	NonProperStrand	3	chr15	84206878	84207869	LINE	L1MD1	L1	chr15L1MD184206797	NonProperStrand	1	1	-inf
chr3	152664144	152664234	LINE	Lx5	L1	chr3Lx5152663373	NonProperStrand	1	chr3	152664398	152664498	LINE	Lx5	L1	chr3Lx5152664260	ProperStrand	1	1	-inf
chr12	108909928	108909972	LTR	RMER4B	ERVK	chr12RMER4B108909929	NonProperStrand	1	chr2	37533416	37533500	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	1	-inf
chr6	8551069	8551090	LTR	MTEa-int	MaLR	chr6MTEa-int8550242	NonProperStrand	1	chr12	78350926	78351043	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr11	120819870	120820031	protein_coding	Csnk1d	utr3	ENSMUSG00000025162	ProperStrand	96	chr5	131978650	131978701	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-6.2769
chr17	39846414	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	135180915	135217293	protein_coding	Eln	intron	ENSMUSG00000029675	NonProperStrand	64	8	-3.4881
chr7	89981579	89981679	SINE	B2_Mm1a	B2	chr7B2_Mm1a89981595	NonProperStrand	1	chr7	89981941	89982031	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n89981920	NonProperStrand	1	1	-inf
chr9	110281293	110281320	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr17	34850414	34850521	protein_coding	Tnxb	utr3	ENSMUSG00000033327	ProperStrand	16	1	-10.2383
chr6	122323434	122323469	Low_complexity	G-rich	Low_complexity	chr6G-rich122323372	NonProperStrand	3	chr6	122325672	122325770	SINE	B1_Mur2	Alu	chr6B1_Mur2122325647	NonProperStrand	10	2	-20.5317
chr16	22739155	22739245	DNA	Arthur1	Tip100	chr16Arthur122739176	ProperStrand	1	chr16	22738583	22738683	SINE	B1F2	Alu	chr16B1F222738531	ProperStrand	1	1	-inf
chr17	39847059	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	103171841	103172013	LTR	ORR1A4	MaLR	chr3ORR1A4103171905	NonProperStrand	3	1	-5.4882
chr5	106683283	106683417	LINE	L1MEc	L1	chr5L1MEc106683136	NonProperStrand	1	chr11	34401624	34401640	protein_coding	Dock2	intron	ENSMUSG00000020143	NonProperStrand	17	1	-inf
chr1	33605849	33605925	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	chr2	156086798	156086872	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	96	1	-9.3642
chr4	130682985	130683102	SINE	MIRb	MIR	chr4MIRb130682994	NonProperStrand	1	chr4	130683272	130683299	Simple_repeat	(CATA)n	Simple_repeat	chr4(CATA)n130683247	ProperStrand	1	1	-inf
chr7	69990157	69990247	LINE	L1_Mus2	L1	chr7L1_Mus269990084	NonProperStrand	1	chr7	69989927	69990027	LTR	IAPLTR2_Mm	ERVK	chr7IAPLTR2_Mm69989624	NonProperStrand	1	1	-inf
chr15	36608582	36608672	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	83	chr18	77774039	77775805	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-9.1568
chr16	50534473	50534563	lincRNA	G730013B05Rik	intron	ENSMUSG00000085617	NonProperStrand	1	chr16	56697778	56697878	protein_coding	Tfg	intron	ENSMUSG00000022757	NonProperStrand	1	1	-inf
chr13	30540663	30540766	SINE	B1_Mus1	Alu	chr13B1_Mus130540640	NonProperStrand	4	chr9	118674951	118675003	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-11.6123
chr10	4357711	4357793	LINE	L1_Mus1	L1	chr10L1_Mus14357519	ProperStrand	9	chr6	117925483	117925535	SINE	B3	B2	chr6B3117925352	NonProperStrand	3	1	-21.0885
chr3	75621452	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr14	64166962	64166990	SINE	RSINE1	B4	chr14RSINE164166877	ProperStrand	1	1	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	22424389	22427827	protein_coding	Defa3	intron	ENSMUSG00000074440	ProperStrand	3	1	-4.3017
chr16	17456645	17456740	protein_coding	Crkl	intron	ENSMUSG00000006134	ProperStrand	44	chr4	85871271	85871332	protein_coding	Adamtsl1	intron	ENSMUSG00000066113	ProperStrand	23	1	-14.5949
chr3	25047990	25048080	LINE	L1M2	L1	chr3L1M225047996	NonProperStrand	1	chr3	25048182	25048282	LTR	RLTR9C	ERVK	chr3RLTR9C25048159	ProperStrand	1	1	-inf
chr4	30135082	30135103	LINE	Lx3A	L1	chr4Lx3A30134820	NonProperStrand	1	chr13	97190578	97190629	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr7	133001419	133001439	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	chr5	142347777	142347796	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-5.6278
chr17	39846747	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	107972388	107972406	protein_coding	Zyg11b	intron	ENSMUSG00000034636	NonProperStrand	1	1	-inf
chr6	125192316	125192352	protein_coding-noncoding	Vamp1	utr5	ENSMUSG00000030337	ProperStrand	18	chr6	35238576	35238602	protein_coding	Slc13a4	intron	ENSMUSG00000029843	NonProperStrand	32	1	-15.7301
chr12	3749326	3749416	protein_coding-noncoding	Dtnb	utr5	ENSMUSG00000071454	NonProperStrand	1	chr12	3748994	3749094	protein_coding	Dtnb	intron	ENSMUSG00000071454	NonProperStrand	12	1	-inf
chr2	95610218	95610308	LTR	RLTR10C	ERVK	chr2RLTR10C95610085	ProperStrand	1	chr2	113273201	113273301	antisense	Gm13963	.	ENSMUSG00000085448	ProperStrand	1	1	-inf
chr19	6059428	6059501	protein_coding	Fau	utr3	ENSMUSG00000038274	ProperStrand	58	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.0376
chr13	112578183	112578288	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr11	99012130	99014436	protein_coding	Ccr7	intron	ENSMUSG00000037944	ProperStrand	29	1	-5.6158
chr17	39845593	39845649	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr14	20392072	20392137	protein_coding	Gm2237	intron	ENSMUSG00000079354	ProperStrand	13	1	-5.0833
chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	chr13	97190609	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.0586
chr15	59022151	59022174	LINE	L2a	L2	chr15L2a59022107	NonProperStrand	6	chr15	59012350	59012430	Simple_repeat	(CAGAG)n	Simple_repeat	chr15(CAGAG)n59012216	NonProperStrand	9	1	-inf
chr7	65422320	65422342	LTR	MERVL-int	ERVL	chr7MERVL-int65416973	NonProperStrand	3	chr1	191588808	191588902	protein_coding	Ptpn14	intron	ENSMUSG00000026604	ProperStrand	53	1	-18.5016
chr12	115193125	115193225	LINE	L1_Mur2	L1	chr12L1_Mur2115193123	NonProperStrand	1	chr12	115192904	115192994	LINE	Lx	L1	chr12Lx115189979	NonProperStrand	1	1	-inf
chr11	109011743	109011767	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr18	5181875	5181919	SINE	B4A	B4	chr18B4A5181843	ProperStrand	1	1	-inf
chr17	39847956	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	135257053	135257157	SINE	B2_Mm2	B2	chr1B2_Mm2135257077	NonProperStrand	1	1	-inf
chr18	34307665	34307753	LINE	L1MA8	L1	chr18L1MA834307597	ProperStrand	1	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr11	60902798	60902888	LTR	MT2A	ERVL	chr11MT2A60902668	NonProperStrand	5	chr11	60902488	60902588	SINE	B1_Mur1	Alu	chr11B1_Mur160902451	NonProperStrand	1	1	-inf
chr12	83711999	83712089	LINE	L1MA9	L1	chr12L1MA983712001	NonProperStrand	3	chr12	83712089	83712189	LTR	ORR1D1	MaLR	chr12ORR1D183712087	ProperStrand	3	3	-inf
chr1	92068803	92068825	LTR	MTC	MaLR	chr1MTC92068706	ProperStrand	1	chr1	92111931	92112046	protein_coding	Cxcr7	utr3	ENSMUSG00000044337	NonProperStrand	34	1	-inf
chr13	97484928	97485018	LTR	MLT1E	MaLR	chr13MLT1E97484839	NonProperStrand	51	chr13	97485114	97485214	LTR	RLTR45	ERVK	chr13RLTR4597485142	NonProperStrand	27	1	-13.9684
chr4	41235660	41235727	SINE	B1_Mus1	Alu	chr4B1_Mus141235570	NonProperStrand	1	chr4	41246610	41246667	protein_coding	Dcaf12	intron	ENSMUSG00000028436	ProperStrand	14	1	-inf
chr18	84252486	84252524	protein_coding	Tshz1	intron	ENSMUSG00000046982	ProperStrand	86	chr18	84259027	84259152	protein_coding	Zadh2	intron	ENSMUSG00000049090	NonProperStrand	21	2	-21.6671
chr4	149649250	149649268	SINE	B1_Mur1	Alu	chr4B1_Mur1149649186	ProperStrand	2	chr2	5379278	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr2	71853400	71853500	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	chr3	130002103	130002146	protein_coding	Col25a1	intron	ENSMUSG00000058897	NonProperStrand	112	1	-9.0844
chr15	84202314	84202824	LTR	ORR1E	MaLR	chr15ORR1E84202516	NonProperStrand	5	chr15	84200691	84202293	Other	RMER1C	Other	chr15RMER1C84202085	NonProperStrand	5	1	-inf
chr19	24142520	24142603	LINE	L1MA6	L1	chr19L1MA624142446	NonProperStrand	1	chr17	39847471	39847510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	37245886	37245904	LTR	MLT1A0	MaLR	chr7MLT1A037245688	ProperStrand	3	chr13	44869576	44869712	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr12	110531503	110531635	LTR	RLTR18-int	ERVK	chr12RLTR18-int110531453	NonProperStrand	1	chr10	41731025	41731041	protein_coding	Armc2	intron	ENSMUSG00000071324	NonProperStrand	2	1	-inf
chr7	25203909	25211193	LTR	MER73	ERVL	chr7MER7325211041	NonProperStrand	1	chr2	5379266	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr11	105132565	105135339	protein_coding	Tlk2	intron	ENSMUSG00000020694	ProperStrand	9	chr9	59834378	59834490	protein_coding	Thsd4	intron	ENSMUSG00000032289	NonProperStrand	34	1	-17.0674
chr5	32491881	32491928	SINE	B4A	B4	chr5B4A32491741	NonProperStrand	3	chr5	32491693	32491744	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n32491662	ProperStrand	1	1	-inf
chr15	85241137	85241237	protein_coding	Atxn10	intron	ENSMUSG00000016541	NonProperStrand	5	chr13	104085269	104085359	protein_coding	Mast4	intron	ENSMUSG00000034751	NonProperStrand	16	1	-22.1000
chr5	114852017	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr9	68878449	68878577	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-6.8851
chr14	36462726	36462816	LTR	RLTR13B1	ERVK	chr14RLTR13B136462623	NonProperStrand	1	chr14	36462426	36462526	SINE	ID_B1	B4	chr14ID_B136462434	NonProperStrand	1	1	-inf
chr5	62809135	62809235	LTR	ORR1B1	MaLR	chr5ORR1B162809088	NonProperStrand	1	chr5	62809272	62809362	LTR	RMER17D2	ERVK	chr5RMER17D262809278	NonProperStrand	1	1	-inf
chr11	6258189	6258279	LINE	Lx8	L1	chr11Lx86258176	ProperStrand	2	chr11	6258021	6258121	SINE	B2_Mm1t	B2	chr11B2_Mm1t6257997	NonProperStrand	2	2	-inf
chr11	94633267	94633285	LTR	RMER15	ERVL	chr11RMER1594632938	ProperStrand	2	chr17	39847702	39847841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr5	37311141	37311173	protein_coding	Ppp2r2c	intron	ENSMUSG00000029120	NonProperStrand	30	chr1	183118115	183118203	protein_coding	Wdr26	intron	ENSMUSG00000038733	ProperStrand	36	1	-14.4634
chr1	101528107	101528197	LINE	Lx3C	L1	chr1Lx3C101528034	ProperStrand	1	chr1	101527886	101527986	LTR	RLTR46	ERVK	chr1RLTR46101527663	NonProperStrand	1	1	-inf
chr15	43632906	43632967	LTR	ORR1A4-int	MaLR	chr15ORR1A4-int43631336	ProperStrand	1	chr17	39846921	39846993	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	64174898	64174944	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr2	164827741	164827758	protein_coding	Ncoa5	intron	ENSMUSG00000039804	NonProperStrand	18	1	-11.3849
chr4	86594007	86594042	LTR	MLT1H	MaLR	chr4MLT1H86593981	ProperStrand	1	chr4	86594263	86594375	LTR	RLTR25B	ERVK	chr4RLTR25B86594235	NonProperStrand	1	1	-inf
chr8	13763518	13763613	protein_coding	Cdc16	intron	ENSMUSG00000038416	ProperStrand	27	chr9	118674951	118675011	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.5619
chrX	128283481	128283571	LINE	L1M4b	L1	chrXL1M4b128283501	ProperStrand	1	chrX	128283934	128284034	LINE	L1_Mus4	L1	chrXL1_Mus4128283583	ProperStrand	1	1	-inf
chr12	113112731	113112821	DNA	URR1A	MER1_type	chr12URR1A113112607	NonProperStrand	1	chr15	85220532	85220632	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-inf
chr2	5379255	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr7	126852800	126852871	protein_coding	Acsm4	intron	ENSMUSG00000047026	NonProperStrand	30	1	-5.9007
chr2	179587677	179587696	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr5	142904717	142905251	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-6.8652
chr13	108222517	108222617	LINE	L1Md_F2	L1	chr13L1Md_F2108222393	ProperStrand	3	chr11	53201984	53202074	protein_coding	Aff4	intron	ENSMUSG00000049470	NonProperStrand	25	2	-21.2590
chr6	22769104	22769194	LINE	L1Md_F2	L1	chr6L1Md_F222768883	ProperStrand	1	chr6	22768738	22768838	LINE	L1_Mur3	L1	chr6L1_Mur322768676	ProperStrand	1	1	-inf
chr11	109011828	109011855	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	49811940	49812058	Simple_repeat	(GAAAA)n	Simple_repeat	chr11(GAAAA)n49811946	NonProperStrand	1	1	-inf
chr1	165623473	165623563	LINE	Lx7	L1	chr1Lx7165623467	ProperStrand	2	chr1	165623346	165623446	LTR	IAPLTR1_Mm	ERVK	chr1IAPLTR1_Mm165623098	ProperStrand	1	1	-inf
chr2	22744886	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr10	32696811	32696832	LTR	MTE-int	MaLR	chr10MTE-int32696719	ProperStrand	1	1	-inf
chr11	3521897	3521920	LINE	L1Md_F2	L1	chr11L1Md_F23521848	NonProperStrand	1	chr1	46808510	46808572	LINE	L1Md_A	L1	chr1L1Md_A46808287	NonProperStrand	13	1	-inf
chr6	61116144	61116244	LTR	ERVL-int	ERVL	chr6ERVL-int61115760	NonProperStrand	1	chr6	61116312	61116402	LTR	MTD	MaLR	chr6MTD61116296	ProperStrand	1	1	-inf
chr15	86485140	86485230	LINE	L1MA7	L1	chr15L1MA786484357	NonProperStrand	4	chr15	86485260	86485360	SINE	B3A	B2	chr15B3A86485261	NonProperStrand	1	1	-inf
chr1	195091296	195091372	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n195090907	NonProperStrand	2	chr1	195087975	195088055	protein_coding	Hsd11b1	intron	ENSMUSG00000016194	ProperStrand	5	2	-inf
chr9	78372881	78372900	LTR	RodERV21-int	ERV1	chr9RodERV21-int78372718	NonProperStrand	1	chr14	31171811	31171828	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	1	-inf
chr7	79070889	79070989	LTR	ORR1A2-int	MaLR	chr7ORR1A2-int79070537	ProperStrand	1	chr7	79071190	79071280	LTR	ORR1A2	MaLR	chr7ORR1A279071039	ProperStrand	1	1	-inf
chr17	39847250	39847344	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	141447648	141447951	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n141447615	ProperStrand	7	3	-9.6592
chr15	73300610	73300652	LTR	LTR33	ERVL	chr15LTR3373300612	NonProperStrand	1	chr17	39846752	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847611	39847642	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	123172214	123172231	protein_coding	P2rx4	intron	ENSMUSG00000029470	NonProperStrand	5	1	-3.2379
chr10	127565267	127565349	protein_coding	Baz2a	utr3	ENSMUSG00000040054	ProperStrand	11	chr4	127030200	127030237	protein_coding	Gjb4	intron	ENSMUSG00000046623	NonProperStrand	20	1	-17.7736
chr8	23587000	23587090	protein_coding	AI316807	utr5	ENSMUSG00000031534	NonProperStrand	1	chr8	23587252	23587352	protein_coding	Slc20a2	utr5	ENSMUSG00000037656	ProperStrand	3	1	-inf
chr5	111360501	111360582	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	chr2	154482639	154482665	protein_coding	Chmp4b	intron	ENSMUSG00000038467	ProperStrand	81	1	-9.1088
chr2	33880102	33880134	lincRNA	C230014O12Rik	intron	ENSMUSG00000087461	ProperStrand	21	chr9	64571856	64571898	protein_coding	Rab11a	intron	ENSMUSG00000004771	NonProperStrand	20	2	-21.1611
chr7	101638178	101638268	LINE	L1VL4	L1	chr7L1VL4101637851	NonProperStrand	1	chr7	101638450	101638550	LINE	Lx5	L1	chr7Lx5101638393	NonProperStrand	1	1	-inf
chr7	143062601	143066002	LINE	Lx5	L1	chr7Lx5143065059	NonProperStrand	6	chr17	39846373	39847027	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.1926
chr17	39846763	39846814	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	73029513	73029529	protein_coding	Fndc3a	intron	ENSMUSG00000033487	ProperStrand	2	1	-5.3533
chr19	44303452	44303485	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	chr9	53240535	53247922	protein_coding	Atm	utr3	ENSMUSG00000034218	ProperStrand	6	1	-14.6008
chr1	153762711	153762743	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	ProperStrand	8	chr14	33967471	33967573	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-14.9462
chr17	23665757	23665804	LINE	L1_Mm	L1	chr17L1_Mm23665756	NonProperStrand	1	chr17	23665721	23665757	LTR	RLTR9C	ERVK	chr17RLTR9C23665366	NonProperStrand	1	1	-inf
chrX	20672478	20672916	LINE	Lx2A1	L1	chrXLx2A120672806	NonProperStrand	7	chrX	20671768	20671992	LTR	ORR1A1-int	MaLR	chrXORR1A1-int20670687	NonProperStrand	17	4	-20.1142
chr11	109011825	109011857	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	88057737	88057779	protein_coding	Rhbg	intron	ENSMUSG00000001417	ProperStrand	5	1	-11.2339
chr9	54958386	54958441	Simple_repeat	(CCCCG)n	Simple_repeat	chr9(CCCCG)n54958363	ProperStrand	1	chr4	108172423	108172439	protein_coding	Zcchc11	intron	ENSMUSG00000034610	NonProperStrand	31	1	-inf
chr16	19075677	19075713	LINE	L1Md_T	L1	chr16L1Md_T19075212	NonProperStrand	3	chr5	42667491	42667554	Other	RMER1B	Other	chr5RMER1B42667307	NonProperStrand	1	1	-inf
chr8	58003768	58003858	LINE	Lx5	L1	chr8Lx558003670	NonProperStrand	1	chr8	55750414	55750514	protein_coding	Wdr17	utr3	ENSMUSG00000039375	ProperStrand	3	1	-inf
chr12	39882908	39882976	LTR	ERVL-int	ERVL	chr12ERVL-int39882849	NonProperStrand	1	chr2	31595268	31595285	protein_coding	Abl1	intron	ENSMUSG00000026842	ProperStrand	150	1	-inf
chr2	33397206	33397306	LTR	MTE2a	MaLR	chr2MTE2a33397196	NonProperStrand	1	chr2	33397000	33397090	SINE	B3A	B2	chr2B3A33396943	ProperStrand	1	1	-inf
chr4	131860550	131860640	SINE	B1_Mur4	Alu	chr4B1_Mur4131860539	NonProperStrand	1	chr4	131860682	131860782	SINE	B2_Mm2	B2	chr4B2_Mm2131860709	NonProperStrand	1	1	-inf
chr7	47188551	47188603	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr1	181176510	181176591	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-9.6207
chr10	128492666	128492765	LINE	L1Md_F	L1	chr10L1Md_F128491087	ProperStrand	14	chr8	14944344	14944373	protein_coding	Arhgef10	intron	ENSMUSG00000071176	ProperStrand	37	1	-15.9680
chr10	60094072	60094162	protein_coding-noncoding	Cdh23	utr3	ENSMUSG00000012819	NonProperStrand	3	chr10	60094144	60094244	protein_coding	Cdh23	intron	ENSMUSG00000012819	NonProperStrand	234	3	-inf
chr17	39848486	39848553	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr10	60300558	60300776	Simple_repeat	(GA)n	Simple_repeat	chr10(GA)n60300554	ProperStrand	2	2	-inf
chr17	39846453	39846974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	34440786	34441337	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	5	-3.3615
chr14	50820551	50820862	LINE	L1_Rod	L1	chr14L1_Rod50820533	NonProperStrand	1	chr6	95122611	95122648	SINE	B4	B4	chr6B495122611	ProperStrand	1	1	-inf
chr11	6419529	6419571	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	chr1	38241825	38241894	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	1	-9.1453
chr15	62053580	62053695	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-6.1552
chr1	82036561	82036651	DNA	URR1A	MER1_type	chr1URR1A82036529	NonProperStrand	2	chr1	82036351	82036451	LINE	L1_Mus4	L1	chr1L1_Mus482036150	NonProperStrand	2	2	-inf
chr17	39848486	39848575	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr6	87997228	87997259	SINE	B1_Mur4	Alu	chr6B1_Mur487997219	ProperStrand	15	2	-7.0761
chr4	84838954	84839044	LINE	L1Md_F2	L1	chr4L1Md_F284838690	ProperStrand	1	chr4	84839383	84839483	LINE	L1Md_F2	L1	chr4L1Md_F284839247	ProperStrand	1	1	-inf
chr16	33251937	33251955	protein_coding	Snx4	intron	ENSMUSG00000022808	ProperStrand	21	chr6	47788069	47788123	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	1	-14.9217
chr5	108440658	108440731	SINE	ID4	ID	chr5ID4108440669	NonProperStrand	1	chr17	31093491	31093569	protein_coding	Umodl1	intron	ENSMUSG00000054134	ProperStrand	35	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr2	157842835	157842965	protein_coding	Tti1	intron	ENSMUSG00000027650	NonProperStrand	64	1	-9.6781
chr18	77774054	77775783	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr8	107059681	107059734	protein_coding	Car7	intron	ENSMUSG00000031883	ProperStrand	12	1	-13.0914
chr17	39846746	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	83644605	83644688	protein_coding	Itgav	utr3	ENSMUSG00000027087	ProperStrand	3	1	-4.3017
chr2	119134127	119134159	LTR	RLTR28	ERVL	chr2RLTR28119133926	ProperStrand	1	chr2	103021900	103021968	lincRNA	Gm13874	intron	ENSMUSG00000087032	NonProperStrand	5	1	-inf
chr7	130716791	130728581	Other	RMER1C	Other	chr7RMER1C130727520	NonProperStrand	1	chr16	16984941	16984970	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	1	-inf
chr17	39847802	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	44946483	44946515	SINE	B3	B2	chr19B344946485	NonProperStrand	1	1	-inf
chr13	97133649	97135324	LINE	L1Md_A	L1	chr13L1Md_A97127548	ProperStrand	4	chr13	97135582	97135671	LINE	L1_Rod	L1	chr13L1_Rod97134707	ProperStrand	5	1	-inf
chr14	54652505	54652596	LTR	MLT1E1A-int	MaLR	chr14MLT1E1A-int54652435	ProperStrand	4	chr14	54652352	54652452	Simple_repeat	(TC)n	Simple_repeat	chr14(TC)n54652327	NonProperStrand	4	4	-inf
chr17	39845453	39845567	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr4	101424294	101424312	protein_coding	Lepr	intron	ENSMUSG00000057722	NonProperStrand	24	1	-3.8866
chr11	68023771	68023833	protein_coding	Ntn1	utr3	ENSMUSG00000020902	NonProperStrand	239	chr9	78479096	78479168	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-4.7969
chr9	9444828	9444846	SINE	B4	B4	chr9B49444830	ProperStrand	1	chr19	5802430	5802512	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr13	60934583	60934601	LINE	L1_Mur3	L1	chr13L1_Mur360934000	ProperStrand	7	chr4	24563808	24563903	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-15.3554
chr17	39846580	39846707	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	19466306	19466323	protein_coding	Stard3nl	intron	ENSMUSG00000003062	NonProperStrand	4	1	-3.6552
chr16	4977662	4977678	protein_coding	4930451G09Rik	exon	ENSMUSG00000022543	NonProperStrand	2	chr5	125073238	125073354	protein_coding	Tctn2	intron	ENSMUSG00000029386	NonProperStrand	79	1	-19.2571
chr4	150242173	150244043	LINE	L2	L2	chr4L2150243950	NonProperStrand	21	chr9	110281305	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.6804
chr17	39847236	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	143290130	143290203	protein_coding	Gm13089	intron	ENSMUSG00000070617	ProperStrand	1	1	-inf
chr8	117441392	117441492	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr3	31205933	31206022	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	23	5	-23.1585
chr17	39846429	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr9	14352593	14352610	protein_coding	Amotl1	intron	ENSMUSG00000013076	NonProperStrand	4	1	-19.2369
chr1	84763473	84763863	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr9	15326263	15326309	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-10.7035
chr11	76415958	76415985	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	chr13	49700672	49700809	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	1	-9.7946
chr8	91635545	91635592	LTR	RMER15-int	ERVL	chr8RMER15-int91635519	NonProperStrand	1	chr9	123461930	123461987	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39845417	39845517	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	125663017	125663420	protein_coding	Coq7	intron	ENSMUSG00000030652	ProperStrand	12	1	-5.2442
chr17	39846750	39846818	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	120120405	120120689	LTR	MTD	MaLR	chr9MTD120120391	NonProperStrand	2	1	-5.3533
chr9	87941841	87941941	LTR	MYSERV-int	ERVK	chr9MYSERV-int87941759	ProperStrand	1	chr9	87941670	87941760	Simple_repeat	(TAGA)n	Simple_repeat	chr9(TAGA)n87941692	ProperStrand	1	1	-inf
chr6	78437846	78437936	LINE	L1Md_A	L1	chr6L1Md_A78434706	NonProperStrand	2	chr11	105050459	105050559	protein_coding	Tlk2	intron	ENSMUSG00000020694	ProperStrand	9	1	-inf
chr18	46992302	46992332	LINE	Lx7	L1	chr18Lx746991395	ProperStrand	1	chr17	39847025	39847142	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	60191656	60191709	LINE	L1Md_A	L1	chrXL1Md_A60190807	ProperStrand	1	chr17	39847216	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	53098264	53098289	protein_coding	Abca1	intron	ENSMUSG00000015243	ProperStrand	27	chr7	112805614	112805708	protein_coding	Dnhd1	intron	ENSMUSG00000030882	ProperStrand	238	1	-10.8740
chr10	41198036	41198097	protein_coding	Mical1	exon	ENSMUSG00000019823	NonProperStrand	2	chr9	123461956	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr10	70575416	70575470	protein_coding	Bicc1	intron	ENSMUSG00000014329	ProperStrand	10	chr9	44792066	44792130	protein_coding	Cd3d	intron	ENSMUSG00000032094	ProperStrand	4	2	-inf
chr13	15859216	15859306	Other	RMER1A	Other	chr13RMER1A15859188	NonProperStrand	1	chr13	15859100	15859200	Other	RMER1B	Other	chr13RMER1B15858785	NonProperStrand	1	1	-inf
chr1	38485202	38485247	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	chr11	88446833	88446855	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-4.2909
chr5	146261138	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	3475523	3475559	protein_coding	Cwf19l2	exon	ENSMUSG00000025898	ProperStrand	36	1	-6.0645
chr8	91641295	91641385	LINE	L1_Mur2	L1	chr8L1_Mur291640254	ProperStrand	5	chr17	39843836	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-7.9392
chr3	68512697	68512768	LTR	MTEb	MaLR	chr3MTEb68512564	NonProperStrand	2	chr9	78175387	78175453	protein_coding	Omt2b	utr5	ENSMUSG00000038750	NonProperStrand	30	1	-21.6628
chr1	9940607	9940707	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr14	119640447	119640537	protein_coding	Hs6st3	intron	ENSMUSG00000053465	NonProperStrand	21	1	-17.0593
chr19	6374564	6374733	protein_coding	Sf1	exon	ENSMUSG00000024949	ProperStrand	69	chr2	5379290	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.2817
chr9	43105455	43105555	LINE	L1MC	L1	chr9L1MC43105282	NonProperStrand	3	chr9	43105616	43105706	LINE	L1MD3	L1	chr9L1MD343105602	NonProperStrand	1	1	-inf
chr15	84932583	84932648	protein_coding	Smc1b	intron	ENSMUSG00000022432	NonProperStrand	45	chr12	24097116	24097172	pseudogene	Gm4437	.	ENSMUSG00000092445	ProperStrand	17	1	-15.1605
chr4	13604692	13604710	LINE	L1Md_F	L1	chr4L1Md_F13603253	ProperStrand	5	chr13	44869582	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr7	80037172	80037272	LINE	L1Md_F3	L1	chr7L1Md_F380037038	NonProperStrand	8	chr8	4236776	4236866	protein_coding	Lrrc8e	utr3	ENSMUSG00000046589	ProperStrand	1	1	-inf
chr7	127558990	127559068	protein_coding	Abca16	intron	ENSMUSG00000051900	ProperStrand	96	chr7	127541596	127541660	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	118	1	-9.7204
chr7	122039826	122044381	LTR	ORR1C1	MaLR	chr7ORR1C1122044019	NonProperStrand	1	chr1	192793960	192794050	protein_coding	Vash2	intron	ENSMUSG00000037568	ProperStrand	2	1	-inf
chr17	39847674	39847700	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	104560347	104560488	SINE	B1_Mus2	Alu	chr2B1_Mus2104560324	NonProperStrand	1	1	-inf
chr10	77049990	77052434	protein_coding-noncoding	Pttg1ip	utr5	ENSMUSG00000009291	ProperStrand	5	chr10	77050090	77052546	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	ProperStrand	20	5	-inf
chr7	47188356	47188446	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	chr9	7193193	7193293	protein_coding	Dcun1d5	intron	ENSMUSG00000032002	ProperStrand	9	1	-18.0947
chr17	39843635	39843705	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	119027410	119027470	protein_coding	Tbc1d16	intron	ENSMUSG00000039976	NonProperStrand	11	1	-5.7931
chr17	39846822	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	32872562	32872645	LTR	RLTR10C	ERVK	chr4RLTR10C32872572	ProperStrand	1	1	-inf
chr4	146908380	146908455	LTR	MYSERV6-int	ERVK	chr4MYSERV6-int146906068	ProperStrand	5	chr4	145670778	145670813	antisense	1700095A21Rik	.	ENSMUSG00000086046	ProperStrand	12	1	-inf
chr8	111550089	111550136	LINE	L1MA9	L1	chr8L1MA9111550044	ProperStrand	2	chr11	61352275	61352346	protein_coding	Epn2	intron	ENSMUSG00000001036	ProperStrand	12	1	-inf
chr19	16228011	16228045	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	chr15	35412927	35413040	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-8.2914
chr9	58034243	58034333	SINE	ID_B1	B4	chr9ID_B158034115	ProperStrand	3	chr9	58034369	58034469	SINE	RSINE1	B4	chr9RSINE158034353	ProperStrand	3	3	-inf
chr17	4082893	4082993	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr5	128196140	128196230	LTR	ORR1D1	MaLR	chr5ORR1D1128196149	ProperStrand	1	1	-inf
chr17	39847347	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	19798506	19798620	SINE	PB1D10	Alu	chr14PB1D1019798490	NonProperStrand	2	1	-5.4040
chr16	4624907	4625007	protein_coding	Pam16	utr5	ENSMUSG00000014301	NonProperStrand	1	chr16	4613162	4613252	protein_coding	Glis2	intron	ENSMUSG00000014303	ProperStrand	79	1	-inf
chr7	28744356	28744446	LINE	L1MC4	L1	chr7L1MC428744369	ProperStrand	1	chr8	88336756	88336856	protein_coding	Itfg1	intron	ENSMUSG00000031703	ProperStrand	45	1	-inf
chr13	92524895	92524945	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	103	chr16	31252112	31252194	protein_coding	Ppp1r2	utr3	ENSMUSG00000047714	ProperStrand	18	1	-13.3810
chr17	39846782	39846818	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	87383000	87383056	LTR	MTA_Mm	MaLR	chr1MTA_Mm87382752	ProperStrand	1	1	-inf
chr2	53139204	53139237	LINE	L1_Mus2	L1	chr2L1_Mus253138768	ProperStrand	1	chr17	39847704	39847779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	92203158	92203178	LTR	MLT2B3	ERVL	chr1MLT2B392202993	ProperStrand	3	chr1	136281519	136281604	LTR	RLTR9E	ERVK	chr1RLTR9E136281275	NonProperStrand	5	1	-inf
chr17	39847100	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	104219832	104219848	LTR	MTEa-int	MaLR	chr3MTEa-int104219298	NonProperStrand	1	1	-inf
chr11	98974798	98974826	LINE	HAL1	L1	chr11HAL198974622	ProperStrand	1	chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	1	-inf
chr17	56563102	56563141	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	78	chr17	3159193	3159265	protein_coding	Scaf8	exon	ENSMUSG00000046201	ProperStrand	73	1	-11.1003
chr5	42678666	42678756	LINE	L1_Mus2	L1	chr5L1_Mus242678489	NonProperStrand	1	chr5	42678502	42678602	LINE	L1_Mus2	L1	chr5L1_Mus242678489	ProperStrand	1	1	-inf
chr1	143626493	143626587	LINE	Lx3_Mus	L1	chr1Lx3_Mus143626106	NonProperStrand	1	chr2	10092333	10092386	protein_coding	Itih5	intron	ENSMUSG00000025780	ProperStrand	23	1	-inf
chr17	39843632	39843667	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	31104026	31104068	protein_coding	Slc7a14	utr3	ENSMUSG00000069072	NonProperStrand	43	1	-3.1550
chr13	100103961	100104006	protein_coding	Ptcd2	intron	ENSMUSG00000021650	ProperStrand	5	chr5	130906643	130906659	protein_coding	Caln1	intron	ENSMUSG00000060371	NonProperStrand	37	1	-18.2685
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	113610443	113610537	protein_coding	Irak2	intron	ENSMUSG00000060477	ProperStrand	23	1	-3.1127
chr6	3201469	3201503	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr18	34629541	34629565	protein_coding	Fam13b	intron	ENSMUSG00000036501	NonProperStrand	18	1	-5.1708
chr9	17987798	17987832	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr4	82972923	82972949	SINE	ID_B1	B4	chr4ID_B182972892	NonProperStrand	1	1	-inf
chr4	32885188	32885275	SINE	B2_Mm2	B2	chr4B2_Mm232885194	ProperStrand	1	chr4	32911556	32911602	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	1	-inf
chr5	119819661	119819751	LTR	RMER15	ERVL	chr5RMER15119819649	NonProperStrand	1	chr5	119819977	119820077	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n119819974	ProperStrand	1	1	-inf
chr17	39846411	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	4629021	4629060	protein_coding	Zfp958	exon	ENSMUSG00000058748	ProperStrand	1	1	-inf
chr9	110590419	110592431	protein_coding	Ccdc12	intron	ENSMUSG00000019659	ProperStrand	25	chr1	159232655	159232744	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	57	1	-13.9009
chr14	33967871	33967971	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	chr1	79607163	79607253	protein_coding	Ap1s3	intron	ENSMUSG00000054702	ProperStrand	24	1	-13.4042
chr9	43049075	43049138	LINE	L1Md_F2	L1	chr9L1Md_F243048973	NonProperStrand	1	chr16	43204450	43204520	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	1	-inf
chr3	40692505	40692585	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	chr13	97190561	97190611	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-10.4216
chr14	34328702	34328792	LINE	L1MC1	L1	chr14L1MC134328664	NonProperStrand	2	chr5	118621353	118621453	protein_coding	Hrk	intron	ENSMUSG00000046607	ProperStrand	51	1	-20.9863
chr14	99126237	99126320	LINE	Lx	L1	chr14Lx99126187	ProperStrand	1	chr9	123462038	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	65373806	65373838	SINE	RSINE1	B4	chr3RSINE165373691	ProperStrand	1	chr11	86331885	86331901	protein_coding	Rps6kb1	intron	ENSMUSG00000020516	ProperStrand	34	1	-inf
chr8	79394899	79394999	lincRNA	Gm10649	intron	ENSMUSG00000074235	ProperStrand	82	chr8	79599641	79599731	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	1	-10.2512
chr17	85070529	85071914	protein_coding	Abcg5	intron	ENSMUSG00000040505	ProperStrand	18	chr9	82054079	82054130	protein_coding	Mei4	intron	ENSMUSG00000043289	ProperStrand	34	1	-15.6208
chr13	33966353	33966389	LTR	ORR1A4-int	MaLR	chr13ORR1A4-int33966074	ProperStrand	1	chr14	8623305	8623393	processed_transcript	Gm10044	.	ENSMUSG00000072723	ProperStrand	28	1	-inf
chr10	40258493	40258602	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr14	20696326	20696343	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	1	-3.6889
chr10	40258565	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr5	77331192	77331239	protein_coding	Aasdh	utr5	ENSMUSG00000055923	NonProperStrand	11	2	-14.0616
chr13	97190544	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr7	141009706	141009724	protein_coding	Fank1	intron	ENSMUSG00000053111	ProperStrand	73	1	-4.7433
chr17	39846492	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	174322950	174323046	LTR	ORR1B1	MaLR	chr2ORR1B1174322814	ProperStrand	1	1	-inf
chr12	32103406	32103496	protein_coding	Slc26a3	intron	ENSMUSG00000001225	ProperStrand	4	chr12	32104116	32104216	pseudogene	Gm9359	.	ENSMUSG00000091040	ProperStrand	1	1	-inf
chr10	40251163	40251199	LTR	RLTR1B	ERV1	chr10RLTR1B40251099	ProperStrand	1	chr9	123461965	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39845764	39845836	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr3	36166469	36166552	SINE	RSINE1	B4	chr3RSINE136166472	NonProperStrand	1	1	-inf
chr13	84295156	84295198	LINE	Lx3C	L1	chr13Lx3C84294566	ProperStrand	1	chr17	39846950	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	67183793	67183906	SINE	B1_Mus1	Alu	chr6B1_Mus167183793	ProperStrand	1	chr17	39843439	39843475	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr11	109011642	109011987	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	39846209	39847169	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	189	-inf
chr16	35981614	35981643	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr16	19883803	19883820	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-6.7823
chr17	39847741	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	8179046	8179073	SINE	B1_Mus1	Alu	chr17B1_Mus18179021	ProperStrand	1	1	-inf
chr14	70763578	70763626	LINE	L1_Mus3	L1	chr14L1_Mus370761900	NonProperStrand	6	chr14	70764194	70764232	LINE	L1_Mus3	L1	chr14L1_Mus370763870	NonProperStrand	2	1	-inf
chr11	22537061	22537137	LTR	MLT1F1	MaLR	chr11MLT1F122537026	ProperStrand	1	chr3	122536863	122536917	protein_coding	Pde5a	intron	ENSMUSG00000053965	NonProperStrand	19	1	-inf
chr12	17548301	17548391	SINE	B1_Mus2	Alu	chr12B1_Mus217548302	ProperStrand	1	chr12	17548132	17548232	Simple_repeat	(TTTC)n	Simple_repeat	chr12(TTTC)n17548119	NonProperStrand	1	1	-inf
chr4	149656460	149656653	protein_coding-noncoding	Rere	utr5	ENSMUSG00000039852	NonProperStrand	1	chr4	149657256	149657346	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	1	-inf
chr5	33512685	33512750	DNA	Charlie25	MER1_type	chr5Charlie2533512493	ProperStrand	21	chr5	33503400	33503486	protein_coding	Slc5a1	utr3	ENSMUSG00000011034	NonProperStrand	541	1	-9.7458
chr17	39848411	39848465	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	157541763	157541845	SINE	B3	B2	chr3B3157541773	ProperStrand	1	1	-inf
chr4	155163295	155163402	LTR	ORR1A2	MaLR	chr4ORR1A2155163057	NonProperStrand	5	chr4	155163388	155163534	LTR	RMER4B	ERVK	chr4RMER4B155163385	ProperStrand	5	5	-inf
chr4	95643013	95643084	protein_coding	Hook1	intron	ENSMUSG00000028572	ProperStrand	23	chr16	20112153	20112202	protein_coding	Klhl24	intron	ENSMUSG00000062901	ProperStrand	54	1	-14.1748
chr1	124913908	124913998	LINE	L1Md_T	L1	chr1L1Md_T124912995	NonProperStrand	1	chr1	124914129	124914229	LINE	L1Md_T	L1	chr1L1Md_T124914021	ProperStrand	1	1	-inf
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr9	123462028	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.7021
chr7	16431889	16432012	SINE	B2_Mm1a	B2	chr7B2_Mm1a16431877	ProperStrand	1	chr9	123461957	123461988	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	9834326	9834382	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr12	69158721	69159053	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	1	-10.3753
chr16	23111311	23111409	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr9	119102643	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	10	1	-13.5768
chr1	171503046	171503122	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr11	88578293	88578359	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-7.3355
chr2	32691408	32691505	protein_coding	Stxbp1	intron	ENSMUSG00000026797	ProperStrand	48	chr2	5379294	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.9784
chr17	39847118	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	127809180	127809203	SINE	B1F	Alu	chr3B1F127809121	NonProperStrand	1	1	-inf
chr5	146261180	146261196	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	106455415	106455518	protein_coding	Acot11	intron	ENSMUSG00000034853	ProperStrand	1	1	-inf
chr17	39848140	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	102771334	102771421	protein_coding	Ryk	intron	ENSMUSG00000032547	NonProperStrand	2	1	-8.4422
chr18	21063471	21063561	LTR	MMERVK10C-int	ERVK	chr18MMERVK10C-int21061735	NonProperStrand	3	chr18	21066643	21066743	LTR	MMERVK10C-int	ERVK	chr18MMERVK10C-int21061735	ProperStrand	2	1	-20.2824
chr10	4382388	4382488	LINE	L1Md_F2	L1	chr10L1Md_F24381874	ProperStrand	2	chr10	4383051	4383141	LINE	L1Md_F2	L1	chr10L1Md_F24382964	NonProperStrand	1	1	-inf
chr13	6585186	6597686	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr13	6585085	6597552	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	18	-24.3736
chr2	22917138	22917191	LTR	MMERVK10C-int	ERVK	chr2MMERVK10C-int22916985	ProperStrand	1	chr15	59407699	59407746	protein_coding	Nsmce2	intron	ENSMUSG00000059586	ProperStrand	74	1	-inf
chr15	84844655	84844745	SINE	B1F2	Alu	chr15B1F284844659	ProperStrand	5	chr15	84844560	84844660	SINE	ID4	ID	chr15ID484844580	ProperStrand	5	5	-inf
chr17	39846516	39846554	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	32818679	32818727	protein_coding-noncoding	Rpl12	utr5	ENSMUSG00000038900	NonProperStrand	1	1	-inf
chr17	39847181	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	4705085	4705176	protein_coding	Fam71e2	utr3	ENSMUSG00000049952	NonProperStrand	4	1	-4.8204
chr4	41337364	41337454	protein_coding	Ubap1	utr3	ENSMUSG00000028437	ProperStrand	2	chr4	41337792	41337892	protein_coding	Kif24	utr3	ENSMUSG00000028438	NonProperStrand	51	1	-20.9863
chr8	97315364	97315454	LTR	MERVL_2A-int	ERVL	chr8MERVL_2A-int97315230	NonProperStrand	1	chr8	97315020	97315120	SINE	B2_Mm1t	B2	chr8B2_Mm1t97315035	NonProperStrand	1	1	-inf
chr12	86459012	86459126	protein_coding	Dlst	intron	ENSMUSG00000004789	NonProperStrand	77	chr11	48833868	48833892	protein_coding	9930111J21Rik2	exon	ENSMUSG00000069892	ProperStrand	9	1	-15.4280
chr10	99474728	99474828	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n99474737	NonProperStrand	1	chr10	99475008	99475098	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n99474985	NonProperStrand	1	1	-inf
chr10	128045410	128045447	Low_complexity	CT-rich	Low_complexity	chr10CT-rich128045286	ProperStrand	1	chr10	128045502	128045607	SINE	B1_Mm	Alu	chr10B1_Mm128045456	NonProperStrand	1	1	-inf
chr3	96270130	96270190	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr11	69916984	69917084	protein_coding	Asgr2	intron	ENSMUSG00000040963	NonProperStrand	118	1	-11.6398
chr17	79621520	79621577	LINE	L1_Mur3	L1	chr17L1_Mur379621482	ProperStrand	1	chr13	97190561	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr1	125418302	125435385	protein_coding	Dpp10	intron	ENSMUSG00000036815	ProperStrand	52	1	-6.8550
chr6	67271303	67271891	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr9	40804746	40804806	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.0260
chr17	39847838	39847938	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	88892142	88892981	LTR	MLT1B	MaLR	chr6MLT1B88892107	ProperStrand	1	1	-inf
chr13	97190543	97190601	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	167447354	167447427	protein_coding	Ube2v1	intron	ENSMUSG00000078923	NonProperStrand	62	1	-5.0586
chr18	46234168	46234268	DNA	Tigger7	MER2_type	chr18Tigger746234113	ProperStrand	6	chr18	46234277	46234367	LINE	L1MA4	L1	chr18L1MA446234283	NonProperStrand	6	6	-inf
chr18	38598574	38598612	protein_coding	Ndfip1	intron	ENSMUSG00000024425	NonProperStrand	104	chr16	35589196	35589268	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	1	-8.6838
chr1	64734030	64734151	antisense	2810408I11Rik	.	ENSMUSG00000087213	ProperStrand	99	chr9	110281286	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-6.5690
chr4	98740116	98740178	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-10.0310
chr12	4615635	4615709	protein_coding	Itsn2	intron	ENSMUSG00000020640	ProperStrand	58	chr6	5826988	5827035	protein_coding	Dync1i1	intron	ENSMUSG00000029757	ProperStrand	12	1	-15.3738
chr16	17679155	17679245	protein_coding	Med15	intron	ENSMUSG00000012114	ProperStrand	39	chr16	48589254	48589301	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	1	-14.7525
chr8	78139733	78139782	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	chr13	97190562	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.8518
chr8	72935273	72935379	protein_coding	Crtc1	intron	ENSMUSG00000003575	ProperStrand	20	chr9	123462033	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr17	39847298	39847331	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	144444145	144444188	protein_coding	Gm15080	intron	ENSMUSG00000072931	ProperStrand	7	1	-3.6430
chr10	23785351	23785413	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr7	55778682	55778702	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int55776986	ProperStrand	1	1	-inf
chr8	85378319	85378337	LINE	Lx9	L1	chr8Lx985377820	NonProperStrand	1	chr9	45456814	45456933	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	1	-inf
chr12	57238643	57238705	LTR	RMER16-int	ERVK	chr12RMER16-int57238415	NonProperStrand	2	chr8	84150018	84150089	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-13.9609
chr15	12180655	12180672	protein_coding	Mtmr12	intron	ENSMUSG00000039458	NonProperStrand	9	chr17	30703356	30703459	protein_coding	Btbd9	intron	ENSMUSG00000062202	NonProperStrand	156	1	-13.9937
chr17	39847258	39847353	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	94856065	94856117	LTR	MTC	MaLR	chr3MTC94855884	ProperStrand	1	1	-inf
chr7	124862454	124862554	LINE	Lx8	L1	chr7Lx8124862284	NonProperStrand	1	chr7	124862620	124862710	SINE	B3	B2	chr7B3124862620	NonProperStrand	1	1	-inf
chr16	8695862	8696723	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr2	41344451	41344467	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-7.9684
chr6	28771371	28771415	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr4	41136375	41136488	protein_coding	Ube2r2	intron	ENSMUSG00000036241	ProperStrand	9	2	-16.5754
chr12	40826845	40826914	protein_coding	Scin	intron	ENSMUSG00000002565	NonProperStrand	16	chr16	92465627	92465702	protein_coding	Rcan1	intron	ENSMUSG00000022951	ProperStrand	210	3	-21.1153
chr2	112381965	112382043	protein_coding	Aven	intron	ENSMUSG00000003604	ProperStrand	47	chr2	91721450	91721492	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-11.8868
chr19	32128182	32128250	protein_coding	Asah2	intron	ENSMUSG00000024887	ProperStrand	10	chr2	5630549	5630637	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.1352
chr3	64051350	64051471	LTR	RNERVK23-int	ERVK	chr3RNERVK23-int64050194	ProperStrand	8	chr10	93581275	93581300	protein_coding	Fgd6	intron	ENSMUSG00000020021	NonProperStrand	12	1	-19.4872
chr13	55699737	55699833	SINE	B1_Mm	Alu	chr13B1_Mm55699688	NonProperStrand	4	mmu-miR-291a-3p	0	22	miRNA	mmu-miR-291a-3p	.	mmu-miR-291a-3p	ProperStrand	3	1	-inf
chr6	49242119	49242219	LINE	L1VL2	L1	chr6L1VL249242015	NonProperStrand	1	chr6	49242242	49242332	LINE	L1_Mus3	L1	chr6L1_Mus349242216	NonProperStrand	1	1	-inf
chr5	143023027	143023075	protein_coding	Radil	intron	ENSMUSG00000029576	ProperStrand	24	chr2	5379293	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.3454
chr13	97190574	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	38633916	38640107	protein_coding	Nr6a1	intron	ENSMUSG00000063972	ProperStrand	112	1	-3.9312
chr5	120585122	120585148	lincRNA	Gm10390	exon	ENSMUSG00000072671	ProperStrand	5	chr5	132212190	132212312	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-12.3598
chr13	64748553	64748569	LINE	L1Md_T	L1	chr13L1Md_T64743956	NonProperStrand	1	chr17	39846312	39846374	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr16	43578745	43578835	protein_coding-noncoding	Zbtb20	utr5	ENSMUSG00000022708	ProperStrand	1	chr16	43578841	43578941	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	1	-inf
chr7	19248932	19249021	LINE	L1Md_F2	L1	chr7L1Md_F219245005	ProperStrand	4	chr17	39847474	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr9	44434312	44434371	protein_coding	Ddx6	intron	ENSMUSG00000032097	ProperStrand	4	chr8	27269030	27269124	protein_coding	Thap1	intron	ENSMUSG00000037214	ProperStrand	33	2	-inf
chr10	127792428	127792518	protein_coding	Cs	intron	ENSMUSG00000005683	ProperStrand	2	chr2	67341985	67342085	protein_coding	Xirp2	intron	ENSMUSG00000027022	ProperStrand	4	2	-inf
chr5	103734756	103734817	LINE	L1ME2	L1	chr5L1ME2103734725	NonProperStrand	1	chr7	141131489	141135372	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-inf
chr11	115666657	115666800	protein_coding	Caskin2	intron	ENSMUSG00000034471	ProperStrand	36	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.8741
chr9	123462128	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	48857033	48857057	protein_coding	9930111J21Rik2	intron	ENSMUSG00000069892	ProperStrand	9	1	-4.5963
chr2	138805014	138805104	LINE	L1MA8	L1	chr2L1MA8138804997	ProperStrand	1	chr2	138804594	138804694	LTR	MTD	MaLR	chr2MTD138804594	ProperStrand	1	1	-inf
chr11	83499348	83499460	LTR	MTA_Mm-int	MaLR	chr11MTA_Mm-int83499269	NonProperStrand	1	chr11	83499682	83499707	LTR	MTA_Mm	MaLR	chr11MTA_Mm83499681	NonProperStrand	1	1	-inf
chr17	39846453	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101784083	101784147	SINE	RSINE1	B4	chr11RSINE1101784056	NonProperStrand	1	1	-inf
chr1	143698575	143698620	LINE	L1Md_F2	L1	chr1L1Md_F2143697292	NonProperStrand	2	chr17	39846759	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	121511720	121511804	LTR	ORR1D1	MaLR	chr5ORR1D1121511704	NonProperStrand	1	chr5	121511654	121511721	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n121511648	ProperStrand	1	1	-inf
chr12	83637004	83637286	LINE	L1M2	L1	chr12L1M283634967	ProperStrand	6	chr12	83637280	83637440	LINE	L1M2	L1	chr12L1M283637278	ProperStrand	3	2	-inf
chr7	73451007	73451121	protein_coding	Lrrk1	intron	ENSMUSG00000015133	ProperStrand	120	chr11	73083073	73083098	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-11.7776
chr2	43321923	43322013	LTR	MT2A	ERVL	chr2MT2A43321782	ProperStrand	1	chr2	43321670	43321770	LTR	ORR1A2	MaLR	chr2ORR1A243321468	NonProperStrand	1	1	-inf
chr13	57428040	57428056	SINE	B1_Mur2	Alu	chr13B1_Mur257428039	ProperStrand	1	chr13	114142647	114142747	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	1	-inf
chr9	123462117	123462182	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	14502826	14502901	protein_coding	Piwil4	intron	ENSMUSG00000036912	NonProperStrand	3	1	-7.0114
chr2	156664616	156664671	antisense	Gm14230	.	ENSMUSG00000087179	NonProperStrand	5	chr17	12895375	12895440	protein_coding	Igf2r	intron	ENSMUSG00000023830	ProperStrand	54	1	-17.3473
chr11	33234129	33234227	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	chr11	115512297	115512343	protein_coding	Grb2	intron	ENSMUSG00000059923	ProperStrand	75	1	-6.9989
chr6	3201465	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	152892271	152893644	protein_coding	BC020535	exon	ENSMUSG00000027474	ProperStrand	7	1	-7.1107
chr1	53615650	53615750	protein_coding	Dnahc7a	intron	ENSMUSG00000067440	NonProperStrand	1	chr1	60372646	60372736	protein_coding	Nbeal1	intron	ENSMUSG00000073664	ProperStrand	53	1	-inf
chr11	98029395	98029485	protein_coding	Med1	intron	ENSMUSG00000018160	ProperStrand	21	chr15	7975211	7975311	protein_coding	Wdr70	intron	ENSMUSG00000039828	ProperStrand	93	3	-21.7055
chrX	153394201	153394257	LTR	MT2C_Mm	ERVL	chrXMT2C_Mm153393935	NonProperStrand	1	chr11	119479100	119479204	protein_coding	Rptor	intron	ENSMUSG00000025583	NonProperStrand	39	1	-inf
chrX	17174180	17174253	DNA	Charlie25	MER1_type	chrXCharlie2517173938	NonProperStrand	1	chrX	17171369	17171426	LTR	RMER19C	ERVK	chrXRMER19C17170819	ProperStrand	1	1	-inf
chr14	106582118	106582218	LINE	Lx3B	L1	chr14Lx3B106582057	NonProperStrand	1	chr14	106581769	106581859	LTR	RLTR42-int	ERVK	chr14RLTR42-int106580491	ProperStrand	1	1	-inf
chr10	75859411	75859439	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	78	chr11	98707489	98707538	protein_coding	Rapgefl1	exon	ENSMUSG00000038020	NonProperStrand	28	1	-13.0371
chr9	48167511	48167568	LTR	ORR1C2	MaLR	chr9ORR1C248167376	ProperStrand	1	chr9	48191391	48191421	protein_coding	Fam55d	intron	ENSMUSG00000044229	ProperStrand	43	1	-inf
chr1	79818376	79818449	protein_coding	Serpine2	intron	ENSMUSG00000026249	ProperStrand	41	chr2	105605110	105605128	protein_coding	Elp4	intron	ENSMUSG00000027167	NonProperStrand	11	1	-16.2907
chr14	57643427	57643516	LINE	L1Md_A	L1	chr14L1Md_A57642743	ProperStrand	6	chr14	57646479	57646542	LINE	L1_Mus3	L1	chr14L1_Mus357645704	NonProperStrand	1	1	-inf
chr19	11794837	11794898	LINE	Lx3C	L1	chr19Lx3C11794842	NonProperStrand	1	chr9	123461957	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	120741107	120741197	protein_coding	Ubr1	intron	ENSMUSG00000027272	NonProperStrand	8	chr2	130620093	130620193	protein_coding	4930402H24Rik	intron	ENSMUSG00000027309	ProperStrand	117	1	-14.8164
chr19	36859922	36860012	LINE	Lx4A	L1	chr19Lx4A36859380	NonProperStrand	3	chr19	36860038	36860138	LINE	Lx4A	L1	chr19Lx4A36860028	ProperStrand	2	2	-inf
chr3	41078699	41078795	LTR	MuRRS4-int	ERV1	chr3MuRRS4-int41078005	ProperStrand	1	chr9	25101129	25101171	protein_coding	Sept7	intron	ENSMUSG00000001833	NonProperStrand	9	1	-inf
chrX	157454904	157456084	LTR	MLT1C	MaLR	chrXMLT1C157455866	ProperStrand	7	chrX	157460375	157461224	LTR	ORR1B2	MaLR	chrXORR1B2157461026	ProperStrand	12	2	-inf
chr5	146261174	146261218	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	113520787	113520847	LTR	RLTR6_Mm	ERV1	chr7RLTR6_Mm113520725	ProperStrand	1	1	-inf
chr13	113794684	113922324	LINE	Lx7	L1	chr13Lx7113922071	ProperStrand	1	chr13	113934071	113967629	LTR	RLTR9C	ERVK	chr13RLTR9C113933918	ProperStrand	1	1	-inf
chr17	39847202	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	90859681	90859733	Simple_repeat	(GGATG)n	Simple_repeat	chr2(GGATG)n90859693	ProperStrand	1	1	-inf
chr12	102741434	102741499	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	chr7	141259968	141260054	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-5.5524
chr12	59040432	59040451	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr1	143643401	143643430	LINE	L1_Mur2	L1	chr1L1_Mur2143642967	ProperStrand	1	1	-inf
chr17	39847507	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	95959503	95959634	SINE	B3	B2	chr11B395959494	NonProperStrand	2	1	-5.4040
chr2	27519759	27519798	SINE	B3A	B2	chr2B3A27519757	NonProperStrand	1	chr13	97190561	97190612	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr1	63384515	63384605	LTR	HERV16-int	ERVL	chr1HERV16-int63384505	NonProperStrand	1	chr1	63384803	63384903	LTR	HERV16-int	ERVL	chr1HERV16-int63384797	NonProperStrand	1	1	-inf
chr19	6234845	6234966	protein_coding	Ppp2r5b	utr5	ENSMUSG00000024777	ProperStrand	4	chr9	123461974	123462004	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr1	130716297	130716363	LTR	MTE2a	MaLR	chr1MTE2a130716093	NonProperStrand	1	chr7	133047342	133047408	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr15	81882056	81882146	LTR	RMER2	ERV1	chr15RMER281881771	ProperStrand	2	chr15	81882154	81882254	LTR	RMER2	ERV1	chr15RMER281882157	ProperStrand	5	2	-inf
chr17	39846485	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	32243799	32243859	snoRNA	ENSMUSG00000080440_SNORA79	.	ENSMUSG00000080440	ProperStrand	1	1	-inf
chr8	124267365	124267460	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	chr5	67417783	67417819	protein_coding	Limch1	intron	ENSMUSG00000037736	NonProperStrand	69	1	-9.1016
chr11	60476271	60476362	LTR	MTC	MaLR	chr11MTC60476195	ProperStrand	3	chr11	60476382	60476482	SINE	B2_Mm2	B2	chr11B2_Mm260476399	ProperStrand	3	3	-inf
chr1	176759431	176759531	SINE	ID_B1	B4	chr1ID_B1176759311	NonProperStrand	1	chr1	176764193	176764283	protein_coding	Grem2	utr3	ENSMUSG00000050069	ProperStrand	22	1	-inf
chr17	39846804	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	109666463	109666521	pseudogene	Gm8473	.	ENSMUSG00000093543	NonProperStrand	2	1	-5.3533
chr14	20904714	20904814	SINE	B3	B2	chr14B320904703	ProperStrand	1	chr14	20904579	20904669	SINE	B3A	B2	chr14B3A20904464	ProperStrand	1	1	-inf
chr4	153722192	153722209	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	43	chr12	17731334	17731471	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-9.2671
chr17	18827334	18827424	LTR	ORR1B1	MaLR	chr17ORR1B118827069	NonProperStrand	1	chr17	18586326	18586426	protein_coding	Vmn2r95	intron	ENSMUSG00000091631	NonProperStrand	2	1	-inf
chrX	16688062	16688162	LINE	Lx4A	L1	chrXLx4A16688005	NonProperStrand	1	chrX	16687887	16687977	SINE	PB1	Alu	chrXPB116687853	NonProperStrand	1	1	-inf
chr7	24475250	24475335	LINE	MusHAL1	L1	chr7MusHAL124474336	ProperStrand	4	chr17	39846785	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr1	3079014	3079031	LINE	L1Md_F2	L1	chr1L1Md_F23077739	NonProperStrand	1	chr16	89936416	89936554	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	1	-inf
chr17	25962816	25962916	protein_coding-noncoding	Wdr24	utr5	ENSMUSG00000025737	NonProperStrand	3	chr17	25962940	25963030	protein_coding	Wdr24	exon	ENSMUSG00000025737	NonProperStrand	22	3	-inf
chrX	25875020	25875110	LINE	L1_Mus1	L1	chrXL1_Mus125869793	NonProperStrand	4	chrX	26653893	26653993	LINE	L1_Mus1	L1	chrXL1_Mus126653606	ProperStrand	1	1	-inf
chr7	12840102	12840192	LINE	L1_Mus1	L1	chr7L1_Mus112836569	NonProperStrand	1	chr7	12842412	12842512	LINE	L1_Mus1	L1	chr7L1_Mus112841149	NonProperStrand	2	1	-inf
chr19	40459534	40459638	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	chr8	127401326	127401342	protein_coding	Gnpat	intron	ENSMUSG00000031985	NonProperStrand	2	1	-16.6876
chr2	102829379	102829450	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr5	20502249	20502310	protein_coding	Ptpn12	intron	ENSMUSG00000028771	NonProperStrand	3	1	-16.2487
chr1	150432854	150433741	LINE	L1_Mus2	L1	chr1L1_Mus2150433639	NonProperStrand	6	chr1	150433806	150435662	LINE	L1_Mus2	L1	chr1L1_Mus2150433727	ProperStrand	6	6	-inf
chr11	33306705	33306836	protein_coding	Ranbp17	intron	ENSMUSG00000040594	NonProperStrand	13	chr6	140678193	140678210	protein_coding	Gm11077	intron	ENSMUSG00000079264	NonProperStrand	2	1	-inf
chr17	27786231	27793971	protein_coding	Pacsin1	intron	ENSMUSG00000040276	NonProperStrand	25	chr17	27767935	27768025	protein_coding	Rps10	intron	ENSMUSG00000052146	ProperStrand	12	1	-17.0686
chr4	150602016	150602095	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr10	59550755	59550777	protein_coding	Ascc1	intron	ENSMUSG00000044475	ProperStrand	3	1	-14.5914
chr8	71594145	71595099	protein_coding-noncoding	Slc18a1	utr3	ENSMUSG00000036330	NonProperStrand	7	chr8	71592486	71594698	protein_coding	Slc18a1	intron	ENSMUSG00000036330	NonProperStrand	65	7	-inf
chr11	83351106	83365681	LTR	MTD	MaLR	chr11MTD83351120	NonProperStrand	1	chr11	83350979	83351069	SINE	B2_Mm1t	B2	chr11B2_Mm1t83350925	NonProperStrand	5	1	-inf
chr5	115012966	115013009	SINE	B1_Mm	Alu	chr5B1_Mm115012861	ProperStrand	3	chr5	115022499	115022598	protein_coding	BC057022	intron	ENSMUSG00000041930	ProperStrand	50	1	-18.9930
chr6	39324600	39324640	protein_coding	Slc37a3	intron	ENSMUSG00000029924	ProperStrand	41	chr2	5379266	5379370	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.2854
chrX	20712109	20712364	LINE	L1Md_F2	L1	chrXL1Md_F220711924	NonProperStrand	2	chrX	20712359	20712852	LINE	L1_Mur3	L1	chrXL1_Mur320712375	NonProperStrand	2	2	-inf
chr6	122453153	122453216	LTR	MT2B	ERVL	chr6MT2B122452994	ProperStrand	1	chr6	122453954	122454027	SINE	B2_Mm2	B2	chr6B2_Mm2122453944	NonProperStrand	1	1	-inf
chrX	73948236	73948938	LINE	L1Md_T	L1	chrXL1Md_T73946773	ProperStrand	32	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.2202
chr17	39846847	39846900	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	30948962	30949025	SINE	PB1D10	Alu	chr1PB1D1030948934	NonProperStrand	2	2	-inf
chr12	87269881	87270355	protein_coding	Ttll5	intron	ENSMUSG00000012609	ProperStrand	42	chr8	73294298	73294360	protein_coding	Pik3r2	exon	ENSMUSG00000031834	ProperStrand	31	1	-14.0799
chr14	69704909	69705012	LINE	Lx8	L1	chr14Lx869704934	NonProperStrand	2	chr14	69704867	69704910	LTR	ORR1D1	MaLR	chr14ORR1D169704539	ProperStrand	1	1	-inf
chr8	48276291	48276374	protein_coding	Stox2	intron	ENSMUSG00000038143	ProperStrand	98	chr13	97190572	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.1821
chr11	109011791	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	146261139	146261267	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-5.4634
chr4	13208966	13209066	LINE	Lx9	L1	chr4Lx913208624	ProperStrand	1	chr4	13209171	13209261	LTR	RMER10A	ERVL	chr4RMER10A13209068	ProperStrand	1	1	-inf
chr17	39846056	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	83432702	83432720	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n83432683	ProperStrand	1	1	-inf
chr11	50378312	50378343	LTR	LTR78	ERV1	chr11LTR7850378150	NonProperStrand	1	chrX	130194784	130194872	protein_coding	Pcdh19	intron	ENSMUSG00000051323	NonProperStrand	20	1	-inf
chr5	146261127	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	47508296	47508322	protein_coding	Ezh2	intron	ENSMUSG00000029687	NonProperStrand	20	1	-7.2424
chr17	22609194	22609294	LINE	L1Md_T	L1	chr17L1Md_T22605870	ProperStrand	1	chr17	22565191	22565281	protein_coding	Zfp946	intron	ENSMUSG00000071266	NonProperStrand	3	1	-inf
chr10	80145506	80145562	lincRNA	Gm17306	intron	ENSMUSG00000091778	ProperStrand	20	chr18	61370557	61370615	protein_coding	Slc26a2	intron	ENSMUSG00000034320	ProperStrand	16	1	-16.9430
chr4	11573162	11573272	LINE	L1_Mus1	L1	chr4L1_Mus111572853	NonProperStrand	1	chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847215	39847351	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	19827392	19827409	protein_coding	Spred2	intron	ENSMUSG00000045671	ProperStrand	6	1	-3.9545
chr9	123462084	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	58013769	58013789	protein_coding	Nell1	intron	ENSMUSG00000055409	NonProperStrand	17	1	-3.3592
chr1	39477402	39477503	protein_coding	Tbc1d8	intron	ENSMUSG00000003134	ProperStrand	68	chr19	11783129	11785398	protein_coding	Gm97	intron	ENSMUSG00000055933	NonProperStrand	8	1	-15.9115
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr7	26197548	26197573	protein_coding	Cxcl17	intron	ENSMUSG00000060188	NonProperStrand	1	1	-inf
chr11	80473102	80473131	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	chr12	41786362	41786426	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	1	-10.9271
chr11	78504439	78504457	protein_coding	Nlk	intron	ENSMUSG00000017376	NonProperStrand	32	chr1	71626051	71626150	protein_coding	Atic	utr3	ENSMUSG00000026192	NonProperStrand	79	1	-12.7402
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	32774384	32774488	LTR	RMER15	ERVL	chr17RMER1532774313	ProperStrand	1	1	-inf
chr17	39846931	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	13949634	13949691	protein_coding	Mllt4	intron	ENSMUSG00000068036	NonProperStrand	4	2	-6.6967
chr17	39845440	39845527	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr11	86340779	86340836	protein_coding	Rps6kb1	intron	ENSMUSG00000020516	ProperStrand	34	1	-3.2376
chr17	39848120	39848147	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	34281269	34281286	LTR	MTD	MaLR	chr6MTD34281124	NonProperStrand	2	1	-8.4422
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr13	113877066	113877191	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	1	-7.6214
chr16	84720308	84723900	protein_coding	Mrpl39	intron	ENSMUSG00000022889	ProperStrand	7	chr2	179657812	179657857	protein_coding	Taf4a	intron	ENSMUSG00000039117	NonProperStrand	33	1	-17.6959
chr18	63078742	63078759	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr18	21169826	21169908	protein_coding	Rnf138	intron	ENSMUSG00000024317	NonProperStrand	12	1	-16.6507
chr13	50271247	50271347	LINE	L1Md_F2	L1	chr13L1Md_F250269088	NonProperStrand	1	chr13	50024112	50024202	LTR	MMETn-int	ERVK	chr13MMETn-int50020307	ProperStrand	1	1	-inf
chr13	9834304	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr5	146260994	146261250	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	2	-4.2250
chr10	83399152	83399223	LTR	MLT2B1	ERVL	chr10MLT2B183399040	NonProperStrand	2	chr11	16754830	16754848	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	1	-20.7239
chr13	49381994	49382019	protein_coding	Fgd3	intron	ENSMUSG00000037946	NonProperStrand	31	chr13	97190573	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.4224
chr17	39846353	39846372	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	117778778	117779031	SINE	B1_Mur4	Alu	chr11B1_Mur4117778929	NonProperStrand	1	1	-inf
chr16	23121963	23122063	protein_coding	Rfc4	intron	ENSMUSG00000022881	ProperStrand	10	chrX	162774588	162775784	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	1	-16.3916
chr16	11196520	11199412	protein_coding	Rsl1d1	intron	ENSMUSG00000005846	ProperStrand	13	chr3	88799926	88799990	protein_coding	Ash1l	intron	ENSMUSG00000028053	ProperStrand	44	1	-15.7766
chr9	123461964	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr16	23110835	23110911	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	3	-3.6620
chr17	39845759	39845796	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr15	101997079	101997106	SINE	B1_Mur4	Alu	chr15B1_Mur4101997029	ProperStrand	1	1	-inf
chr4	124935971	124936026	SINE	RSINE1	B4	chr4RSINE1124935868	NonProperStrand	1	chr4	133680264	133680362	protein_coding-noncoding	Ubxn11	utr5	ENSMUSG00000012126	NonProperStrand	24	1	-inf
chr11	84114378	84114454	protein_coding	Acaca	intron	ENSMUSG00000020532	NonProperStrand	76	chr11	107155025	107155067	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-8.2611
chr10	75936373	75936440	protein_coding	Mcm3ap	intron	ENSMUSG00000001150	ProperStrand	37	chr6	91173797	91173817	protein_coding	Fbln2	intron	ENSMUSG00000064080	NonProperStrand	2	1	-21.1015
chr6	3201470	3201532	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	97165592	97165689	protein_coding	Poc5	intron	ENSMUSG00000021671	ProperStrand	16	2	-8.9350
chr9	123461822	123461908	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr6	125321999	125322016	protein_coding	Plekhg6	intron	ENSMUSG00000038167	NonProperStrand	2	1	-8.0983
chr6	146642610	146642700	LTR	IAPEz-int	ERVK	chr6IAPEz-int146639819	ProperStrand	1	chr6	146642819	146642919	LTR	IAPLTR2_Mm	ERVK	chr6IAPLTR2_Mm146642767	ProperStrand	1	1	-inf
chr9	21801318	21801524	protein_coding	Ccdc151	intron	ENSMUSG00000039632	ProperStrand	87	chr2	141571799	141571837	protein_coding	Macrod2	intron	ENSMUSG00000068205	ProperStrand	94	1	-10.3733
chr7	126874133	126874190	LTR	MURVY-LTR	ERV1	chr7MURVY-LTR126873976	NonProperStrand	2	chr12	41222062	41222151	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-16.1024
chr17	39847353	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	50055271	50055398	LTR	ORR1E-int	MaLR	chr5ORR1E-int50055292	ProperStrand	2	1	-5.4040
chr15	79720976	79720992	SINE	PB1D10	Alu	chr15PB1D1079720951	NonProperStrand	3	chr11	113420639	113420775	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-15.3404
chr11	58792583	58792700	protein_coding	Trim11	intron	ENSMUSG00000020455	NonProperStrand	1	chr1	127918584	127918624	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	1	-inf
chr17	39843589	39843686	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	134251445	134251461	protein_coding	Man1c1	intron	ENSMUSG00000037306	NonProperStrand	14	1	-5.3047
chr16	14170472	14175371	protein_coding-noncoding	Nde1	utr5	ENSMUSG00000022678	ProperStrand	4	chr16	14169541	14175296	protein_coding	Nde1	intron	ENSMUSG00000022678	ProperStrand	37	4	-inf
chr7	75753387	75753487	SINE	B4A	B4	chr7B4A75753216	ProperStrand	4	chr7	75753496	75753586	Simple_repeat	(CAA)n	Simple_repeat	chr7(CAA)n75753507	NonProperStrand	4	4	-inf
chr7	118537595	118537611	LINE	L2c	L2	chr7L2c118537570	NonProperStrand	3	chr17	39846427	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr9	39270928	39270945	LINE	L1_Mur2	L1	chr9L1_Mur239270581	ProperStrand	5	chr17	39843466	39843538	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-7.4674
chr6	61330223	61330243	protein_coding	Fam190a	intron	ENSMUSG00000039578	NonProperStrand	37	chrX	139312088	139312200	protein_coding	Ammecr1	intron	ENSMUSG00000042225	ProperStrand	23	1	-14.9461
chr14	37127903	37128003	LINE	Lx	L1	chr14Lx37127298	ProperStrand	1	chr9	123461882	123461972	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	34952256	34952289	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr11	4668169	4668275	protein_coding	Nf2	utr3	ENSMUSG00000009073	NonProperStrand	37	1	-11.6063
chr14	96038312	96038412	LINE	L1_Mur3	L1	chr14L1_Mur396038182	NonProperStrand	1	chr14	106755666	106755755	LINE	Lx8	L1	chr14Lx8106755216	NonProperStrand	1	1	-inf
chr1	93488435	93488525	LINE	Lx6	L1	chr1Lx693488123	ProperStrand	2	chr1	93488527	93488627	SINE	B1_Mur4	Alu	chr1B1_Mur493488545	ProperStrand	2	2	-inf
chr12	51667218	51667341	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	chr11	78405205	78405231	protein_coding	Nlk	intron	ENSMUSG00000017376	NonProperStrand	32	2	-19.0343
chr4	119293501	119293553	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	chr11	117158319	117158387	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-8.7647
chr5	88598634	88601224	LINE	L1Md_F2	L1	chr5L1Md_F288597916	NonProperStrand	5	chr17	39846389	39846984	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-9.1539
chr13	98313713	98313735	Simple_repeat	(TC)n	Simple_repeat	chr13(TC)n98313622	NonProperStrand	3	chr3	9460423	9460536	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-12.8376
chrX	23752997	23753097	LINE	L1Md_F2	L1	chrXL1Md_F223750324	NonProperStrand	1	chrX	40071177	40071267	protein_coding	Odz1	intron	ENSMUSG00000016150	NonProperStrand	9	1	-inf
chr17	70791823	70791843	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr8	105281024	105281045	protein_coding	Cdh11	intron	ENSMUSG00000031673	ProperStrand	49	1	-8.8484
chr10	5719889	5719989	protein_coding	Esr1	intron	ENSMUSG00000019768	ProperStrand	18	chr4	32795383	32795473	protein_coding	Mdn1	exon	ENSMUSG00000058006	ProperStrand	53	1	-14.7120
chr5	36549575	36549677	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-6.5677
chrX	87238364	87238385	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr14	70685429	70685461	protein_coding	Ppp3cc	intron	ENSMUSG00000022092	ProperStrand	66	1	-9.2912
chr17	39848486	39848576	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	6300279	6300379	LINE	L1Md_T	L1	chr3L1Md_T6299058	ProperStrand	15	1	-4.1773
chr11	34409234	34409347	protein_coding	Dock2	intron	ENSMUSG00000020143	NonProperStrand	17	chr2	71090186	71090234	protein_coding	Dync1i2	intron	ENSMUSG00000027012	ProperStrand	14	1	-17.4521
chr4	91335565	91335620	LINE	Lx5	L1	chr4Lx591335559	NonProperStrand	1	chr4	137953461	137953523	protein_coding	AB041806	utr3	ENSMUSG00000046109	ProperStrand	4	1	-inf
chr12	110851287	110851387	lincRNA	Rian	intron	ENSMUSG00000091793	ProperStrand	27	chr2	155455768	155455858	protein_coding	Myh7b	intron	ENSMUSG00000074652	NonProperStrand	20	1	-15.8768
chr18	56559998	56560063	protein_coding	Gramd3	utr5	ENSMUSG00000001700	NonProperStrand	7	chr8	109242278	109242299	protein_coding	Tmco7	intron	ENSMUSG00000041949	ProperStrand	22	1	-18.8786
chr13	6632657	6632734	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr2	32442524	32442544	protein_coding	Gm17343	intron	ENSMUSG00000090453	ProperStrand	1	1	-inf
chr18	83224039	83224139	LTR	MTEa	MaLR	chr18MTEa83224035	ProperStrand	1	chr18	83152893	83152982	protein_coding	Zfp516	intron	ENSMUSG00000058881	NonProperStrand	2	1	-inf
chr5	72233605	72233695	protein_coding	Gabrb1	intron	ENSMUSG00000029212	ProperStrand	56	chr8	47660647	47660747	protein_coding	Mlf1ip	intron	ENSMUSG00000031629	ProperStrand	2	1	-19.4902
chr12	94351627	94351727	LINE	Lx7	L1	chr12Lx794351361	NonProperStrand	1	chr12	94351289	94351379	Simple_repeat	(T)n	Simple_repeat	chr12(T)n94351281	ProperStrand	1	1	-inf
chr11	97812834	97812936	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	chr4	8143642	8143673	protein_coding	Car8	intron	ENSMUSG00000041261	NonProperStrand	3	1	-16.8618
chr9	123462053	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	21750410	21750503	protein_coding	Olfr1361	exon	ENSMUSG00000049737	ProperStrand	6	1	-5.4370
chr9	114593681	114593771	DNA	RCHARR1	MER1_type	chr9RCHARR1114593681	NonProperStrand	3	chr9	114593563	114593663	LTR	MTB	MaLR	chr9MTB114593580	NonProperStrand	2	2	-inf
chr17	39847659	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	72580338	72580355	protein_coding	Gm15401	intron	ENSMUSG00000072999	ProperStrand	1	1	-inf
chr11	12691050	12691150	LINE	L1Md_F3	L1	chr11L1Md_F312690854	NonProperStrand	1	chr11	12614028	12614118	LINE	Lx8	L1	chr11Lx812613976	ProperStrand	1	1	-inf
chr4	62631785	62631812	protein_coding	Zfp618	intron	ENSMUSG00000028358	ProperStrand	65	chr18	56753744	56753869	protein_coding	1700065I17Rik	intron	ENSMUSG00000032900	ProperStrand	18	1	-14.3122
chr2	167688523	167688588	DNA	RCHARR1	MER1_type	chr2RCHARR1167688500	NonProperStrand	1	chr2	167689699	167689778	Low_complexity	GA-rich	Low_complexity	chr2GA-rich167689699	NonProperStrand	1	1	-inf
chr17	39846954	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	88409683	88409705	pseudogene	Gm13284	.	ENSMUSG00000082789	NonProperStrand	2	1	-5.3533
chr5	33520520	33520593	LTR	MTA_Mm	MaLR	chr5MTA_Mm33520344	NonProperStrand	42	chr5	33505412	33505481	protein_coding	Slc5a1	utr3	ENSMUSG00000011034	NonProperStrand	541	1	-8.3422
chr12	51764117	51767586	LINE	Lx2	L1	chr12Lx251764031	ProperStrand	1	chr17	39847844	39847919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	54732083	54732183	LTR	MTB_Mm	MaLR	chr3MTB_Mm54732039	NonProperStrand	3	chr3	54732197	54733681	LTR	MTD	MaLR	chr3MTD54732544	NonProperStrand	3	3	-inf
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	39411741	39411834	SINE	B1_Mus1	Alu	chr6B1_Mus139411768	NonProperStrand	2	1	-5.4040
chr13	23300139	23300198	LINE	L1_Mur2	L1	chr13L1_Mur223300101	ProperStrand	10	chr17	39847656	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-3.6759
chr17	39847277	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	17160817	17160923	LTR	ORR1A4	MaLR	chrXORR1A417160810	ProperStrand	1	1	-inf
chr6	29482634	29482650	protein_coding	Irf5	intron	ENSMUSG00000029771	ProperStrand	1	chr11	68332840	68332950	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-inf
chr17	39847880	39847904	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	59287151	59287245	LTR	MTD	MaLR	chr2MTD59286934	NonProperStrand	5	1	-3.2379
chr1	153128966	153129025	SINE	RSINE1	B4	chr1RSINE1153128977	ProperStrand	1	chr13	97190562	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr12	87471469	87471567	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	78	chr13	97190560	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6162
chr13	23621985	23622056	lincRNA	Gm11335	intron	ENSMUSG00000085016	ProperStrand	56	chr2	121542826	121542895	protein_coding	Frmd5	intron	ENSMUSG00000027238	ProperStrand	82	3	-inf
chr5	111412830	111412930	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	chr5	110669546	110669636	protein_coding	Ankle2	intron	ENSMUSG00000029501	ProperStrand	10	1	-13.3769
chr17	80601034	80601069	protein_coding	Srsf7	intron	ENSMUSG00000024097	ProperStrand	12	chr9	123462082	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr14	54247636	54247689	LINE	L1_Mus4	L1	chr14L1_Mus454246061	ProperStrand	2	chr14	54249105	54249168	LINE	L1_Mus4	L1	chr14L1_Mus454247967	ProperStrand	7	1	-21.1088
chr2	5379266	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chrX	13048418	13048478	protein_coding	Nyx	intron	ENSMUSG00000051228	ProperStrand	12	1	-7.7556
chr4	18597566	18597585	processed_transcript	Gm11867	.	ENSMUSG00000087402	ProperStrand	17	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.0412
chr4	86478549	86478617	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	chr1	91383315	91384566	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	65	1	-12.7854
chr13	113925789	113925879	LINE	L1MB4	L1	chr13L1MB4113925483	NonProperStrand	1	chr13	113926134	113926234	LINE	L2	L2	chr13L2113926142	ProperStrand	1	1	-inf
chr7	37245886	37245904	LTR	MLT1A0	MaLR	chr7MLT1A037245688	ProperStrand	3	chr19	6090900	6090996	protein_coding	Cdca5	utr3	ENSMUSG00000024791	ProperStrand	15	1	-21.4444
chr2	154917240	154917340	LINE	L2	L2	chr2L2154917264	ProperStrand	1	chr2	154916677	154916767	SINE	B4A	B4	chr2B4A154916699	NonProperStrand	1	1	-inf
chr10	79120698	79120788	LTR	RMER19B	ERVK	chr10RMER19B79120572	NonProperStrand	1	chr10	79120484	79120584	SINE	B2_Mm2	B2	chr10B2_Mm279120472	NonProperStrand	1	1	-inf
chr6	102856325	102856425	LINE	Lx2B	L1	chr6Lx2B102855912	ProperStrand	1	chr6	102856553	102856643	LINE	Lx2B	L1	chr6Lx2B102856400	NonProperStrand	1	1	-inf
chr7	99479620	99479672	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	chr1	118309788	118309850	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	NonProperStrand	63	2	-11.7628
chr17	39847353	39847380	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	35121148	35121228	protein_coding	Lsm2	intron	ENSMUSG00000007050	NonProperStrand	1	1	-inf
chr19	4625368	4625468	protein_coding	Rce1	intron	ENSMUSG00000024889	NonProperStrand	1	chr9	123461965	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	34952236	34952289	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr3	89248655	89248738	protein_coding	Pbxip1	intron	ENSMUSG00000042613	ProperStrand	12	1	-13.9171
chr14	13852972	13853072	LINE	L1_Mm	L1	chr14L1_Mm13851955	ProperStrand	1	chr16	81715346	81715436	LINE	L1Md_F	L1	chr16L1Md_F81713357	NonProperStrand	2	1	-inf
chr2	167318700	167318757	protein_coding	Rnf114	utr5	ENSMUSG00000006418	NonProperStrand	70	chr2	167315042	167315122	protein_coding	Spata2	intron	ENSMUSG00000047030	ProperStrand	27	1	-13.3292
chr3	79567145	79567191	LINE	Lx2	L1	chr3Lx279567057	ProperStrand	5	chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr7	140010635	140010677	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr18	77556055	77556140	protein_coding	Loxhd1	intron	ENSMUSG00000032818	NonProperStrand	260	1	-5.9388
chr7	19497607	19497624	LTR	RMER15	ERVL	chr7RMER1519497381	ProperStrand	1	chr5	27754799	27754846	protein_coding	Dpp6	intron	ENSMUSG00000061576	NonProperStrand	86	1	-inf
chr11	22942399	22942435	Simple_repeat	(TC)n	Simple_repeat	chr11(TC)n22942381	NonProperStrand	1	chr18	35569515	35569626	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-inf
chr17	39846411	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	29756309	29756361	LTR	MYSERV6-int	ERVK	chr5MYSERV6-int29753933	NonProperStrand	5	1	-3.1907
chr2	144530626	144530677	protein_coding	Dtd1	intron	ENSMUSG00000027430	ProperStrand	26	chr8	123028768	123028853	protein_coding	Gse1	intron	ENSMUSG00000031822	NonProperStrand	68	1	-13.4646
chr13	73281388	73281478	LTR	IAPEz-int	ERVK	chr13IAPEz-int73280573	NonProperStrand	1	chr13	73281683	73281783	LTR	IAPEz-int	ERVK	chr13IAPEz-int73281385	NonProperStrand	1	1	-inf
chr7	25724823	25725956	SINE	B4A	B4	chr7B4A25725927	NonProperStrand	1	chr7	25724796	25724815	SINE	MIRb	MIR	chr7MIRb25724657	ProperStrand	2	1	-inf
chr2	40376449	40376539	LINE	L1Md_F2	L1	chr2L1Md_F240376164	NonProperStrand	1	chr2	40376676	40376777	LINE	L1Md_F2	L1	chr2L1Md_F240376164	ProperStrand	1	1	-inf
chr7	4794423	4794513	processed_transcript	Gm15525	.	ENSMUSG00000084815	NonProperStrand	48	chr12	78350922	78351022	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.3364
chr2	165321072	165321108	LTR	ORR1B2	MaLR	chr2ORR1B2165321067	NonProperStrand	1	chr2	165317127	165317179	protein_coding	2810408M09Rik	exon	ENSMUSG00000039725	ProperStrand	10	1	-inf
chr1	122357172	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr13	63518907	63518970	protein_coding	Fancc	intron	ENSMUSG00000021461	ProperStrand	182	1	-6.7005
chr3	22381632	22381732	LINE	L1MA4	L1	chr3L1MA422381632	NonProperStrand	1	chr3	22381425	22381515	SINE	B3A	B2	chr3B3A22381320	ProperStrand	1	1	-inf
chr5	24139818	24139916	SINE	B2_Mm2	B2	chr5B2_Mm224139734	NonProperStrand	1	chr5	24139992	24140082	SINE	B3A	B2	chr5B3A24139898	ProperStrand	1	1	-inf
chr17	22454781	22454871	LINE	L1Md_F2	L1	chr17L1Md_F222454674	ProperStrand	1	chr17	22454397	22454497	LINE	L1_Mur3	L1	chr17L1_Mur322453798	ProperStrand	1	1	-inf
chr9	123462014	123462040	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	34448016	34448116	protein_coding	Gm11158	intron	ENSMUSG00000079617	NonProperStrand	17	1	-3.3592
chr12	80950337	80950366	DNA	MER2	MER2_type	chr12MER280950135	NonProperStrand	1	chr8	106735903	106735942	protein_coding	Bean1	intron	ENSMUSG00000031872	ProperStrand	66	1	-inf
chr10	111491051	111492090	LTR	IAPEz-int	ERVK	chr10IAPEz-int111490956	ProperStrand	8	chr10	111492861	111492961	LTR	IAPEz-int	ERVK	chr10IAPEz-int111492107	ProperStrand	13	1	-20.3570
chr5	146260994	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	15988305	15988321	protein_coding	Fat3	intron	ENSMUSG00000074505	ProperStrand	10	1	-8.6697
chr6	18051269	18051346	protein_coding	Asz1	intron	ENSMUSG00000010796	ProperStrand	4	chr13	97190559	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	3	-inf
chr8	94608588	94608710	LINE	L1MEf	L1	chr8L1MEf94608523	ProperStrand	1	chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	74583711	74583728	LINE	L1Md_A	L1	chrXL1Md_A74580852	NonProperStrand	2	chr11	77692022	77692054	LTR	MTD	MaLR	chr11MTD77691898	ProperStrand	2	1	-19.8939
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr7	35596304	35596419	protein_coding	Chst8	intron	ENSMUSG00000060402	NonProperStrand	15	1	-9.3687
chr1	10026412	10026455	protein_coding	Cops5	intron	ENSMUSG00000025917	ProperStrand	6	chr9	68986628	68986681	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-14.3524
chr12	41734665	41734744	LINE	L1Md_F2	L1	chr12L1Md_F241733640	NonProperStrand	1	chr17	39846458	39846498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	75642043	75642133	LINE	L1MC	L1	chr12L1MC75641956	ProperStrand	2	chr12	75649825	75649925	LINE	Lx8	L1	chr12Lx875648841	ProperStrand	4	2	-inf
chr17	39848134	39848154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	76949185	76949254	protein_coding	Rbfox2	intron	ENSMUSG00000033565	NonProperStrand	14	1	-4.0485
chr4	28110863	28110880	LINE	L1_Mur1	L1	chr4L1_Mur128109206	NonProperStrand	1	chr11	116008541	116008646	protein_coding	Fbf1	intron	ENSMUSG00000020776	ProperStrand	74	1	-inf
chr3	69436479	69436516	LTR	ORR1A2	MaLR	chr3ORR1A269436408	NonProperStrand	3	chr3	69433289	69433406	LTR	RLTR21	ERVK	chr3RLTR2169433223	NonProperStrand	3	3	-inf
chr17	39846658	39846711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	127236627	127236671	lincRNA	A630031M04Rik	intron	ENSMUSG00000087470	NonProperStrand	1	1	-inf
chr15	68128024	68128084	LINE	L1ME3B	L1	chr15L1ME3B68127836	ProperStrand	4	chr15	68135984	68136069	LTR	RMER19B	ERVK	chr15RMER19B68135840	ProperStrand	1	1	-inf
chr6	125162364	125162548	LINE	L1MEd	L1	chr6L1MEd125162471	ProperStrand	31	chr11	68904058	68904148	protein_coding	Vamp2	utr3	ENSMUSG00000020894	ProperStrand	37	3	-inf
chr13	9834306	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr12	17548113	17548332	SINE	B1_Mus2	Alu	chr12B1_Mus217548107	NonProperStrand	4	1	-14.7868
chr17	39847322	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	84822548	84822565	protein_coding	Prg2	intron	ENSMUSG00000027073	ProperStrand	2	1	-6.5615
chr19	44303012	44303090	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	chr14	21543171	21543230	protein_coding	Ndst2	utr3	ENSMUSG00000039308	NonProperStrand	56	1	-9.9687
chrX	74234283	74234720	LINE	L1Md_F2	L1	chrXL1Md_F274233133	ProperStrand	9	chr17	39847197	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.1539
chr10	86842211	86842336	LINE	Lx	L1	chr10Lx86841577	ProperStrand	1	chr10	128276828	128276846	protein_coding	Sarnp	intron	ENSMUSG00000078427	ProperStrand	41	1	-inf
chr7	80035571	80035610	Other	RMER1C	Other	chr7RMER1C80035435	ProperStrand	6	chr7	80035727	80035776	Other	RMER1C	Other	chr7RMER1C80035734	ProperStrand	4	1	-inf
chr8	71620339	71620429	protein_coding-noncoding	Atp6v1b2	utr5	ENSMUSG00000006273	ProperStrand	10	chr8	71620440	71620540	protein_coding	Atp6v1b2	intron	ENSMUSG00000006273	ProperStrand	70	10	-inf
chr4	126428417	126428439	protein_coding	Ncdn	intron	ENSMUSG00000028833	ProperStrand	8	chr17	28839776	28839882	protein_coding	Mapk14	intron	ENSMUSG00000053436	ProperStrand	28	1	-17.6903
chr3	27709479	27709579	Other	RMER1C	Other	chr3RMER1C27709223	ProperStrand	5	chr3	27709752	27709842	SINE	B1_Mur1	Alu	chr3B1_Mur127709718	ProperStrand	1	1	-inf
chr4	52877627	52877727	LINE	Lx6	L1	chr4Lx652877202	NonProperStrand	1	chr4	52877831	52877921	LINE	Lx6	L1	chr4Lx652877804	ProperStrand	1	1	-inf
chr7	30617095	30623447	SINE	B1_Mm	Alu	chr7B1_Mm30617089	NonProperStrand	4	chr7	30623498	30624572	protein_coding	Zfp940	intron	ENSMUSG00000050855	ProperStrand	13	3	-inf
chr2	180179662	180179752	LINE	L1MB3	L1	chr2L1MB3180179649	ProperStrand	18	chr2	180179476	180179653	SINE	RSINE1	B4	chr2RSINE1180179482	NonProperStrand	3	3	-inf
chr9	114552664	114552765	SINE	B3A	B2	chr9B3A114552579	NonProperStrand	6	chr9	114552762	114552861	SINE	ID_B1	B4	chr9ID_B1114552784	ProperStrand	6	6	-inf
chr18	6511528	6511592	protein_coding	Epc1	intron	ENSMUSG00000024240	ProperStrand	56	chr5	100816334	100816390	protein_coding	Sec31a	intron	ENSMUSG00000035325	ProperStrand	16	1	-14.8529
chr17	39847248	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	114244791	114244810	LTR	IAPLTR2_Mm	ERVK	chrXIAPLTR2_Mm114244505	NonProperStrand	2	1	-6.5615
chr17	10143743	10143833	LINE	Lx5	L1	chr17Lx510143705	NonProperStrand	1	chr17	10143353	10143453	LTR	ORR1C1	MaLR	chr17ORR1C110143280	NonProperStrand	1	1	-inf
chr4	91238348	91238446	LINE	L1Md_T	L1	chr4L1Md_T91237207	ProperStrand	36	chr1	63214722	63214778	protein_coding	Ndufs1	intron	ENSMUSG00000025968	NonProperStrand	47	1	-13.5496
chr17	39848598	39848669	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	52150024	52150045	SINE	B1_Mus1	Alu	chr7B1_Mus152149934	NonProperStrand	1	1	-inf
chr16	91715655	91715686	lincRNA	Gm10785	exon	ENSMUSG00000085169	ProperStrand	4	chr13	97190562	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr3	95059659	95059761	protein_coding	Prune	intron	ENSMUSG00000015711	ProperStrand	19	chr6	134717634	134717664	protein_coding	Dusp16	intron	ENSMUSG00000030203	ProperStrand	47	1	-14.8551
chr1	106385169	106385234	LINE	L1_Mur1	L1	chr1L1_Mur1106383348	ProperStrand	2	chr17	39847326	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr1	136364889	136364953	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr5	114852014	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-7.6688
chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chr12	109650320	109650392	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-7.5718
chr17	61516946	61517036	LINE	L1Md_F	L1	chr17L1Md_F61513484	ProperStrand	1	chr17	61517225	61517325	LINE	L1Md_Gf	L1	chr17L1Md_Gf61517043	ProperStrand	1	1	-inf
chr9	119245579	119247044	protein_coding-noncoding	Myd88	utr3	ENSMUSG00000032508	ProperStrand	4	chr9	119245473	119245573	protein_coding	Myd88	utr3	ENSMUSG00000032508	ProperStrand	7	2	-inf
chr11	109012016	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr2	125564916	125564997	protein_coding	Secisbp2l	utr3	ENSMUSG00000035093	ProperStrand	51	1	-12.6006
chr7	98889318	98889388	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	chr17	33846138	33847549	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-8.6253
chr17	39846472	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	90702052	90702440	protein_coding	Mtch2	intron	ENSMUSG00000027282	ProperStrand	13	4	-6.6926
chr18	8438988	8439088	LINE	L1Md_F2	L1	chr18L1Md_F28434472	ProperStrand	1	chr18	8439526	8439616	LINE	L1Md_F2	L1	chr18L1Md_F28439435	NonProperStrand	1	1	-inf
chr17	39847128	39847154	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	140913401	140927727	protein_coding	Eif3b	intron	ENSMUSG00000056076	NonProperStrand	1	1	-inf
chr13	97190576	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr5	38672086	38672190	protein_coding	Otop1	intron	ENSMUSG00000051596	NonProperStrand	55	2	-8.6915
chr10	128364388	128364458	LINE	Lx4B	L1	chr10Lx4B128363916	NonProperStrand	1	chr17	39846930	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	55717541	55718459	protein_coding-noncoding	Ap1g2	utr3	ENSMUSG00000040701	ProperStrand	4	chr14	55717178	55717526	protein_coding	Thtpa	utr3	ENSMUSG00000045691	NonProperStrand	9	4	-inf
chr9	57739995	57740011	LINE	Lx7	L1	chr9Lx757738757	NonProperStrand	1	chr9	123462051	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	114335664	114335764	LINE	L1MD2	L1	chr13L1MD2114335590	NonProperStrand	2	chr13	114335845	114335935	SINE	PB1	Alu	chr13PB1114335828	NonProperStrand	2	2	-inf
chr11	86538314	86538416	protein_coding-noncoding	Cltc	utr3	ENSMUSG00000047126	ProperStrand	6	chr5	135180586	135180845	protein_coding	Eln	intron	ENSMUSG00000029675	ProperStrand	3	1	-inf
chr1	161040754	161040789	LINE	L1_Mus1	L1	chr1L1_Mus1161040595	NonProperStrand	1	chr4	32655205	32655250	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	1	-inf
chr5	146261268	146261324	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr10	121438748	121438820	protein_coding	Srgap1	intron	ENSMUSG00000020121	ProperStrand	69	1	-7.5986
chr17	6041627	6041685	protein_coding	Synj2	intron	ENSMUSG00000023805	NonProperStrand	11	chr4	118236421	118237748	protein_coding	Wdr65	intron	ENSMUSG00000028730	ProperStrand	288	1	-12.3431
chr17	39846818	39846852	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	155203511	155203619	Simple_repeat	(TTTC)n	Simple_repeat	chr4(TTTC)n155203460	NonProperStrand	3	1	-4.3017
chr14	19278149	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr12	112736466	112736574	SINE	B1_Mus1	Alu	chr12B1_Mus1112736448	ProperStrand	5	1	-16.7564
chr5	64810157	64810211	LTR	ORR1A2	MaLR	chr5ORR1A264810097	NonProperStrand	3	chr5	128114315	128114415	protein_coding	Glt1d1	intron	ENSMUSG00000049971	NonProperStrand	20	1	-23.6265
chr8	84675006	84675088	LINE	L1MA6	L1	chr8L1MA684674546	ProperStrand	5	chr5	134535224	134552089	LTR	MTEa	MaLR	chr5MTEa134552016	NonProperStrand	1	1	-inf
chr8	109090324	109090395	LTR	MTD	MaLR	chr8MTD109090218	ProperStrand	4	chr12	55045886	55048890	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	2	-inf
chr17	39848485	39848547	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	95920292	95920364	LTR	RMER19B	ERVK	chr15RMER19B95919608	NonProperStrand	3	1	-7.6307
chr4	130708583	130708608	LTR	RLTR26	ERVK	chr4RLTR26130708535	NonProperStrand	2	chr1	136912593	136912696	protein_coding	Lgr6	intron	ENSMUSG00000042793	ProperStrand	106	1	-18.2331
chr15	11878648	11878748	LINE	L1MA5	L1	chr15L1MA511878655	ProperStrand	2	chr15	11878371	11878461	LTR	RLTR20C	ERVK	chr15RLTR20C11878293	ProperStrand	2	2	-inf
chr17	26633085	26633107	LTR	RMER15	ERVL	chr17RMER1526633050	ProperStrand	1	chr17	26632784	26632878	SINE	MIRm	MIR	chr17MIRm26632790	NonProperStrand	2	1	-inf
chr17	65289983	65290083	SINE	B1_Mus1	Alu	chr17B1_Mus165289949	NonProperStrand	1	chr17	70654286	70654376	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr17	39846642	39846728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	115879867	115879933	Low_complexity	A-rich	Low_complexity	chr4A-rich115879876	ProperStrand	1	1	-inf
chrX	93451126	93451216	protein_coding	Vsig4	intron	ENSMUSG00000044206	ProperStrand	22	chr1	176771419	176771519	protein_coding	Grem2	intron	ENSMUSG00000050069	ProperStrand	22	1	-16.1313
chr3	97176421	97176450	LTR	RMER17A2	ERVK	chr3RMER17A297176256	ProperStrand	2	chr15	58134649	58134776	lincRNA	Gm15943	intron	ENSMUSG00000086801	NonProperStrand	53	2	-inf
chr17	39846781	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	21235459	21235502	pseudogene	Gm6378	.	ENSMUSG00000062962	ProperStrand	5	1	-3.1907
chr15	94200577	94200596	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	chr6	88293240	88293330	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	1	-9.5786
chr17	4082109	4082199	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr1	149296955	149297056	LINE	L1Md_F2	L1	chr1L1Md_F2149296688	ProperStrand	1	1	-inf
chr6	3201509	3201567	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	78175382	78175441	protein_coding	Omt2b	utr5	ENSMUSG00000038750	NonProperStrand	30	1	-4.1758
chr11	49219373	49219463	LTR	ORR1D2-int	MaLR	chr11ORR1D2-int49219105	NonProperStrand	2	chr11	49219481	49219581	LTR	RMER6C	ERVK	chr11RMER6C49219498	ProperStrand	3	2	-inf
chr17	21022212	21022315	LINE	L1_Mus2	L1	chr17L1_Mus221016580	ProperStrand	7	chr7	127238046	127238070	protein_coding	Dnahc3	intron	ENSMUSG00000052273	NonProperStrand	37	1	-17.5154
chr3	153642543	153642601	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr4	108179728	108179767	protein_coding	Zcchc11	intron	ENSMUSG00000034610	ProperStrand	30	1	-10.2648
chr3	79894295	79894392	LINE	Lx5	L1	chr3Lx579893985	ProperStrand	1	chr3	79894900	79894952	LTR	ORR1A0-int	MaLR	chr3ORR1A0-int79894727	NonProperStrand	1	1	-inf
chr8	25799884	25799910	protein_coding	Adam3	exon	ENSMUSG00000031553	NonProperStrand	22	chr13	44869595	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.4623
chr9	65201735	65201788	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr3	153361340	153361400	protein_coding	St6galnac3	intron	ENSMUSG00000052544	ProperStrand	282	1	-7.9624
chr15	103335440	103335511	protein_coding	Pde1b	intron	ENSMUSG00000022489	NonProperStrand	30	chr3	96263049	96263111	tRNA	tRNA750-AsnGTT	.	104988	ProperStrand	2	1	-22.0647
chr15	85219732	85219822	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr10	85473620	85473720	protein_coding	Bpifc	intron	ENSMUSG00000050108	NonProperStrand	43	1	-9.9739
chr11	115241260	115241350	LINE	L1M5	L1	chr11L1M5115241105	NonProperStrand	1	chr11	115241414	115241514	SINE	B1_Mus1	Alu	chr11B1_Mus1115241373	ProperStrand	1	1	-inf
chr11	6259561	6261617	LTR	MTD	MaLR	chr11MTD6259545	ProperStrand	5	chr11	6259237	6259550	SINE	B1_Mm	Alu	chr11B1_Mm6259236	NonProperStrand	2	1	-23.2669
chr9	103344929	103345749	lincRNA	5830418P13Rik	intron	ENSMUSG00000086236	ProperStrand	54	chr16	4179910	4180004	protein_coding	Crebbp	exon	ENSMUSG00000022521	ProperStrand	81	1	-11.6312
chr6	127109442	127109532	lincRNA	9330179D12Rik	intron	ENSMUSG00000084922	NonProperStrand	19	chr6	127092686	127109441	protein_coding	Ccnd2	intron	ENSMUSG00000000184	ProperStrand	19	5	-19.5742
chr3	139425983	139426073	LTR	MTD	MaLR	chr3MTD139425944	ProperStrand	1	chr3	139321747	139321846	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	61	1	-inf
chr11	97511519	97511535	lincRNA	Gm11613	intron	ENSMUSG00000085586	NonProperStrand	2	chr9	123461848	123461933	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr3	104465294	104465392	SINE	B4	B4	chr3B4104465274	NonProperStrand	1	chr5	135785935	135785963	protein_coding	Fkbp6	intron	ENSMUSG00000040013	NonProperStrand	36	1	-inf
chr2	102829376	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr5	121439274	121439292	protein_coding	Rph3a	intron	ENSMUSG00000029608	NonProperStrand	86	1	-9.1530
chr1	52805857	52805879	DNA	MER45B	Tip100	chr1MER45B52805855	NonProperStrand	1	chr1	63517511	63517643	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-inf
chr5	121205053	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr15	73634817	73634917	protein_coding	Gm628	intron	ENSMUSG00000072487	ProperStrand	110	1	-8.6723
chr9	9973885	9973985	protein_coding	Cntn5	intron	ENSMUSG00000039488	ProperStrand	39	chr11	85636588	85636678	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	2	-16.3350
chr7	141484908	141485045	protein_coding	D7Ertd443e	exon	ENSMUSG00000030994	NonProperStrand	96	chr1	59859259	59859277	protein_coding	Bmpr2	intron	ENSMUSG00000067336	NonProperStrand	6	1	-15.8629
chr11	3391977	3392067	protein_coding-noncoding	Pla2g3	utr5	ENSMUSG00000034579	NonProperStrand	4	chr11	3391885	3391985	protein_coding	Pla2g3	exon	ENSMUSG00000034579	NonProperStrand	6	1	-inf
chr10	67124873	67124928	LTR	MTE2b	MaLR	chr10MTE2b67124694	NonProperStrand	9	chr8	18810670	18810773	SINE	B1_Mus1	Alu	chr8B1_Mus118810670	ProperStrand	1	1	-inf
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr3	96632716	96632771	protein_coding	Cd160	intron	ENSMUSG00000038304	NonProperStrand	11	1	-11.3338
chr17	39847030	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	103171841	103172013	LTR	ORR1A4	MaLR	chr3ORR1A4103171905	NonProperStrand	3	1	-4.3017
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	42461155	42461181	protein_coding	Grik4	intron	ENSMUSG00000032017	ProperStrand	153	1	-4.7442
chr17	94866318	94866387	LINE	Lx9	L1	chr17Lx994865308	ProperStrand	6	chr7	117406419	117406458	protein_coding	Swap70	intron	ENSMUSG00000031015	ProperStrand	20	1	-19.3610
chr17	39846667	39846792	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	43124750	43124767	protein_coding	Trim29	intron	ENSMUSG00000032013	NonProperStrand	4	1	-3.6552
chr12	40223974	40224064	LINE	L1_Mus2	L1	chr12L1_Mus240223975	ProperStrand	3	chr12	40223858	40223958	LINE	Lx4B	L1	chr12Lx4B40223377	NonProperStrand	3	3	-inf
chr5	146261240	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr17	45569255	45569358	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-8.1503
chr5	111080466	111080566	protein_coding-noncoding	Noc4l	utr3	ENSMUSG00000033294	NonProperStrand	1	chr5	111080210	111080300	protein_coding	Noc4l	intron	ENSMUSG00000033294	NonProperStrand	1	1	-inf
chr11	12269387	12269442	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.1522
chr16	62591004	62591104	LINE	L1Md_T	L1	chr16L1Md_T62587031	ProperStrand	1	chr7	47188544	47188634	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	1	-inf
chr12	41579322	41579375	LINE	Lx9	L1	chr12Lx941579210	ProperStrand	1	chr7	109520119	109520190	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-inf
chr16	13563919	13564009	protein_coding	Parn	intron	ENSMUSG00000022685	ProperStrand	65	chr17	45569040	45569253	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-8.6391
chr9	70180348	70180390	protein_coding	Myo1e	intron	ENSMUSG00000032220	NonProperStrand	28	chr17	65652326	65652427	protein_coding	Tmem232	intron	ENSMUSG00000045036	ProperStrand	160	1	-11.5950
chr17	39848171	39848298	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	51433556	51433574	protein_coding	Rfx6	intron	ENSMUSG00000019900	NonProperStrand	1	1	-inf
chr13	40951771	40951796	LTR	RMER6B	ERVK	chr13RMER6B40951721	NonProperStrand	7	chr2	41344451	41344468	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-15.7510
chr1	144982527	144982617	LINE	L1_Mur3	L1	chr1L1_Mur3144978775	ProperStrand	1	chr1	144982696	144982796	LINE	Lx2	L1	chr1Lx2144982608	ProperStrand	1	1	-inf
chr17	39846759	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	96630310	96630872	protein_coding	Cd160	intron	ENSMUSG00000038304	NonProperStrand	11	2	-3.3422
chr8	70590727	70590768	LINE	L2a	L2	chr8L2a70590504	NonProperStrand	1	chr17	39846750	39846831	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846583	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	47181612	47181628	protein_coding	Snx25	intron	ENSMUSG00000038291	NonProperStrand	6	2	-5.1926
chr7	123226335	123226425	lincRNA	1700003G18Rik	intron	ENSMUSG00000087621	NonProperStrand	2	chr7	123226437	123226537	protein_coding	Gm4353	utr3	ENSMUSG00000091900	NonProperStrand	1	1	-inf
chr10	77598597	77598691	LTR	RMER20A	ERVK	chr10RMER20A77598503	NonProperStrand	2	chr17	39847701	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr16	52093642	52093740	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	chr1	127331923	127331944	protein_coding	Actr3	utr5	ENSMUSG00000026341	NonProperStrand	28	1	-12.6623
chr2	157462563	157462663	Other	RMER1B	Other	chr2RMER1B157462581	NonProperStrand	3	chr2	157462442	157462532	SINE	B1_Mm	Alu	chr2B1_Mm157462432	NonProperStrand	3	3	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr9	110281299	110281325	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.6654
chrX	162860207	162860297	protein_coding	Ofd1	intron	ENSMUSG00000040586	ProperStrand	27	chr17	30594141	30596388	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-8.8442
chr17	39847330	39848096	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	123461793	123462190	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1309	-8.2505
chr7	68112994	68113033	LINE	L1Md_F2	L1	chr7L1Md_F268112796	ProperStrand	2	chr7	68111345	68111440	LINE	L1_Mus2	L1	chr7L1_Mus268109117	NonProperStrand	6	1	-inf
chr4	40976620	40976710	LINE	L2a	L2	chr4L2a40976545	NonProperStrand	3	chr4	40976735	40976835	SINE	B2_Mm2	B2	chr4B2_Mm240976755	ProperStrand	7	3	-inf
chr5	146260994	146261048	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	24701753	24701829	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	65	1	-4.9078
chr4	117202570	117202643	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr15	27949166	27949217	protein_coding	Trio	intron	ENSMUSG00000022263	ProperStrand	54	1	-13.9281
chr9	110281291	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	116610716	116610835	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-5.8057
chr1	92121731	92121850	LTR	LTR33A_	ERVL	chr1LTR33A_92121733	NonProperStrand	1	chr11	69670698	69670724	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-inf
chr9	21639253	21639343	protein_coding	Dock6	intron	ENSMUSG00000032198	NonProperStrand	39	chr9	21639372	21640992	protein_coding	Gm6484	intron	ENSMUSG00000047822	ProperStrand	4	3	-inf
chr10	42220329	42220391	SINE	B4A	B4	chr10B4A42220346	ProperStrand	1	chr10	42219954	42220046	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n42219779	NonProperStrand	1	1	-inf
chr6	34898724	34898824	protein_coding	2010107G12Rik	intron	ENSMUSG00000029847	ProperStrand	21	chr2	25192748	25192838	protein_coding	Man1b1	intron	ENSMUSG00000036646	ProperStrand	5	1	-19.1421
chr14	107065658	107065758	LINE	L1_Mus4	L1	chr14L1_Mus4107064279	NonProperStrand	1	chr14	107065952	107066042	LTR	RLTR25B	ERVK	chr14RLTR25B107065859	NonProperStrand	1	1	-inf
chrX	52520298	52520386	LINE	L1_Mm	L1	chrXL1_Mm52519614	ProperStrand	2	chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr13	24228854	24228954	protein_coding	Lrrc16a	intron	ENSMUSG00000021338	ProperStrand	112	chr2	131919293	131919383	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	4	-inf
chr17	40928746	40928846	protein_coding	Crisp2	utr5	ENSMUSG00000023930	ProperStrand	3	chr2	173654564	173654654	pseudogene	Gm14371	.	ENSMUSG00000085938	ProperStrand	178	1	-16.2261
chr18	64395649	64395669	antisense	1700091E21Rik	.	ENSMUSG00000086128	NonProperStrand	6	chr3	152403919	152404032	protein_coding-noncoding	Pigk	utr5	ENSMUSG00000039047	ProperStrand	3	1	-inf
chr12	21340536	21343268	protein_coding	Adam17	intron	ENSMUSG00000052593	ProperStrand	16	chr12	21324772	21325266	protein_coding	Iah1	intron	ENSMUSG00000062054	NonProperStrand	5	2	-inf
chr1	82876318	82880019	protein_coding	Agfg1	intron	ENSMUSG00000026159	ProperStrand	65	chr13	44869573	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.3398
chr13	97190552	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-4.3645
chr13	31881687	31881751	LTR	MTD	MaLR	chr13MTD31881661	ProperStrand	1	chr1	179060058	179060087	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	1	-inf
chr7	135703523	135703613	LTR	MT2A	ERVL	chr7MT2A135703459	ProperStrand	1	chr7	135703168	135703268	Simple_repeat	(TATG)n	Simple_repeat	chr7(TATG)n135703168	NonProperStrand	1	1	-inf
chr7	19273885	19273975	LTR	MTD	MaLR	chr7MTD19273745	ProperStrand	1	chr7	19267352	19267452	protein_coding	Psg20	intron	ENSMUSG00000063305	ProperStrand	21	1	-inf
chr7	25246209	25246309	Satellite	ZP3AR	Satellite	chr7ZP3AR25246110	NonProperStrand	9	chr7	25246320	25250666	protein_coding	Plaur	intron	ENSMUSG00000046223	NonProperStrand	11	3	-inf
chr14	68606085	68606175	LTR	ORR1B1	MaLR	chr14ORR1B168606028	ProperStrand	2	chr2	90979362	90979462	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	1	-18.5168
chr1	72617809	72617881	SINE	B4A	B4	chr1B4A72617772	NonProperStrand	2	chr1	72617672	72617754	Simple_repeat	(TATG)n	Simple_repeat	chr1(TATG)n72617693	ProperStrand	1	1	-inf
chr17	39846336	39847709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	118674947	118675071	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	177	-inf
chr17	39847131	39847308	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	86962325	86971871	protein_coding	Trim37	intron	ENSMUSG00000018548	NonProperStrand	72	6	-3.9858
chr15	62090280	62090326	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr12	80441371	80441396	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-5.8610
chr1	20816751	20817274	LTR	ORR1C2	MaLR	chr1ORR1C220817183	NonProperStrand	3	chr1	72188087	72188137	SINE	B2_Mm2	B2	chr1B2_Mm272188015	ProperStrand	1	1	-inf
chr13	112578191	112578266	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr1	182784019	182784095	protein_coding	BC031781	intron	ENSMUSG00000038806	ProperStrand	16	1	-6.8081
chr11	95444722	95444751	protein_coding	Ngfr	intron	ENSMUSG00000000120	NonProperStrand	8	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-13.2764
chr1	188573249	188573339	lincRNA	A430105J06Rik	intron	ENSMUSG00000090488	NonProperStrand	1	chr1	188573088	188573188	protein_coding	Rrp15	utr5	ENSMUSG00000001305	ProperStrand	1	1	-inf
chr11	109011656	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	96091185	96091272	protein_coding	Gm7971	intron	ENSMUSG00000079422	ProperStrand	30	1	-7.4801
chr13	6356093	6356183	LINE	L1_Mur2	L1	chr13L1_Mur26355984	NonProperStrand	1	chr13	6355870	6355970	LINE	Lx	L1	chr13Lx6355781	ProperStrand	1	1	-inf
chr4	155219223	155219307	SINE	B3	B2	chr4B3155219176	ProperStrand	2	chr4	155193406	155193480	protein_coding-noncoding	Ccnl2	utr5	ENSMUSG00000029068	NonProperStrand	9	2	-inf
chr11	72445240	72445263	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	chr9	110943198	110943231	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-9.7748
chr2	5795560	5795650	protein_coding-noncoding	Sec61a2	utr3	ENSMUSG00000025816	ProperStrand	4	chr2	5794771	5794871	protein_coding	Sec61a2	intron	ENSMUSG00000025816	ProperStrand	23	2	-inf
chr6	118511580	118511619	protein_coding	Ankrd26	intron	ENSMUSG00000007827	ProperStrand	4	chr9	123462015	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr11	75533831	75533869	SINE	B3A	B2	chr11B3A75533794	ProperStrand	1	chr11	75553617	75553710	protein_coding	Ywhae	intron	ENSMUSG00000020849	ProperStrand	38	1	-inf
chr12	17882530	17882590	LTR	MERVL-int	ERVL	chr12MERVL-int17882365	NonProperStrand	1	chr17	39847762	39847856	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	23248106	23248136	LTR	ORR1D1	MaLR	chr19ORR1D123247805	NonProperStrand	2	chr19	23253752	23253792	Simple_repeat	(TTTC)n	Simple_repeat	chr19(TTTC)n23253704	NonProperStrand	2	2	-inf
chr4	22659664	22659687	LINE	L1_Mur2	L1	chr4L1_Mur222659509	ProperStrand	1	chr17	39848014	39848047	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	103191820	103191915	protein_coding	Itga5	intron	ENSMUSG00000000555	ProperStrand	41	chr5	35897718	35897754	pseudogene	Plk-ps1	.	ENSMUSG00000083907	ProperStrand	1	1	-inf
chr17	39847440	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	81384611	81384634	SINE	RSINE1	B4	chr7RSINE181384503	NonProperStrand	2	1	-5.4040
chr1	136607554	136607584	protein_coding	Syt2	intron	ENSMUSG00000026452	ProperStrand	51	chr3	31118843	31118958	protein_coding	Slc7a14	intron	ENSMUSG00000069072	NonProperStrand	43	2	-inf
chr10	12615734	12615834	LINE	L1VL2	L1	chr10L1VL212614748	ProperStrand	2	chr10	12587515	12587605	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	1	-17.6272
chr10	122565141	122565186	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr19	8903920	8904025	protein_coding	Hnrnpul2	intron	ENSMUSG00000071659	ProperStrand	40	1	-13.3355
chr3	31298639	31298729	LTR	ORR1D2-int	MaLR	chr3ORR1D2-int31297517	NonProperStrand	1	chr3	31299093	31299193	LTR	RLTR1D	ERV1	chr3RLTR1D31299030	ProperStrand	1	1	-inf
chr1	161038112	161038160	LINE	L1MEc	L1	chr1L1MEc161037911	ProperStrand	9	chr17	13036346	13036432	antisense	Airn	.	ENSMUSG00000078247	ProperStrand	40	1	-16.7581
chr17	39847341	39847958	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	23551298	23551669	protein_coding	Btn1a1	intron	ENSMUSG00000000706	ProperStrand	29	9	-11.3968
chr4	32741842	32742475	SINE	B1_Mur2	Alu	chr4B1_Mur232741838	ProperStrand	4	chr4	32741414	32741835	SINE	B3	B2	chr4B332741510	ProperStrand	4	4	-inf
chr7	99854653	99854753	LINE	Lx8	L1	chr7Lx899854567	NonProperStrand	1	chr2	44861508	44861598	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	25	1	-inf
chr2	164152361	164152378	LINE	L1_Mus4	L1	chr2L1_Mus4164152046	NonProperStrand	1	chr17	39846461	39847826	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	83726857	83726935	LTR	MERVL_2A-int	ERVL	chr10MERVL_2A-int83726815	NonProperStrand	1	chrX	93339941	93340009	protein_coding	Msn	intron	ENSMUSG00000031207	NonProperStrand	27	1	-inf
chr17	87546797	87546887	LTR	MT2B2	ERVL	chr17MT2B287546823	ProperStrand	1	chr17	87546661	87546761	SINE	B1_Mur1	Alu	chr17B1_Mur187546687	NonProperStrand	1	1	-inf
chr12	88456848	88456928	protein_coding	Pomt2	intron	ENSMUSG00000034126	NonProperStrand	15	chr12	88368495	88368568	protein_coding	Tmem63c	intron	ENSMUSG00000034145	ProperStrand	23	1	-16.7832
chr11	86771059	86771078	protein_coding	Ypel2	intron	ENSMUSG00000018427	NonProperStrand	4	chr1	7140128	7140181	protein_coding	Pcmtd1	intron	ENSMUSG00000051285	ProperStrand	119	1	-16.3593
chr13	69315318	69315408	LINE	L1Md_T	L1	chr13L1Md_T69309938	NonProperStrand	1	chr13	68917834	68917934	protein_coding	Adcy2	intron	ENSMUSG00000021536	ProperStrand	12	1	-inf
chr1	179298345	179298416	LTR	ORR1C1	MaLR	chr1ORR1C1179298352	ProperStrand	2	chr4	115811453	115811485	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	2	-inf
chr14	46821771	46821856	LTR	MTEb	MaLR	chr14MTEb46821763	NonProperStrand	1	chr14	46819047	46819093	Simple_repeat	(TC)n	Simple_repeat	chr14(TC)n46819024	NonProperStrand	1	1	-inf
chr18	79917024	79917124	LINE	L1Md_T	L1	chr18L1Md_T79917004	NonProperStrand	1	chr18	79916871	79916961	LINE	L1_Mur3	L1	chr18L1_Mur379916257	ProperStrand	1	1	-inf
chr5	137524208	137524381	DNA	MER44B	MER2_type	chr5MER44B137524225	NonProperStrand	7	chr5	137524385	137524936	LTR	RMER17C	ERVK	chr5RMER17C137524671	NonProperStrand	7	4	-inf
chr7	49783265	49783324	LINE	L1Md_F2	L1	chr7L1Md_F249782375	NonProperStrand	29	chr16	35327770	35327839	protein_coding	Sec22a	intron	ENSMUSG00000034473	ProperStrand	38	1	-14.4190
chr2	59617809	59617911	protein_coding-noncoding	Tanc1	utr5	ENSMUSG00000035168	ProperStrand	8	chr2	59617724	59617814	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	6	-20.5067
chr17	9745713	9745733	LINE	L1VL1	L1	chr17L1VL19742580	ProperStrand	1	chr17	39846921	39847012	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	53369651	53370218	LINE	L1MDa	L1	chr19L1MDa53370168	NonProperStrand	1	chr19	53371785	53371829	LINE	L1MDa	L1	chr19L1MDa53371625	NonProperStrand	1	1	-inf
chr11	6620338	6620394	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	14	chr14	75713975	75714029	protein_coding	Zc3h13	intron	ENSMUSG00000022000	NonProperStrand	39	1	-15.8662
chr15	89363450	89363644	protein_coding	Shank3	utr5	ENSMUSG00000022623	ProperStrand	86	chr8	122498240	122498415	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.5064
chr13	97493564	97493652	LINE	L1_Rod	L1	chr13L1_Rod97492375	NonProperStrand	23	chr13	97493719	97494422	LTR	ERVL-E-int	ERVL	chr13ERVL-E-int97494311	NonProperStrand	2	1	-20.1924
chr17	39846453	39846472	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	34988375	34988393	SINE	RSINE1	B4	chr9RSINE134988378	NonProperStrand	1	1	-inf
chr7	12005254	12005344	LTR	MMETn-int	ERVK	chr7MMETn-int12005273	ProperStrand	1	chr7	12004964	12005064	LTR	RLTRETN_Mm	ERVK	chr7RLTRETN_Mm12004938	ProperStrand	1	1	-inf
chrX	60284982	60285072	LINE	L1_Mus3	L1	chrXL1_Mus360284710	ProperStrand	1	chrX	60284616	60284716	LINE	Lx	L1	chrXLx60284080	ProperStrand	3	1	-inf
chr17	39846415	39846440	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	116261880	116261952	LTR	ORR1A3-int	MaLR	chr7ORR1A3-int116261887	ProperStrand	1	1	-inf
chr10	62598542	62598611	protein_coding	Mypn	exon	ENSMUSG00000020067	ProperStrand	87	chr9	118547610	118547645	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-8.7379
chr13	55228032	55228097	protein_coding	Zfp346	intron	ENSMUSG00000021481	ProperStrand	35	chr9	56223570	56223664	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-9.5829
chr15	36600610	36600676	SINE	B1_Mus1	Alu	chr15B1_Mus136600585	ProperStrand	16	chr4	125049221	125049251	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n125049227	ProperStrand	1	1	-inf
chr1	71039372	71039436	LINE	L1_Mus3	L1	chr1L1_Mus371038446	NonProperStrand	1	chr17	39847703	39847735	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	151903952	151904052	LINE	Lx8	L1	chrXLx8151903910	ProperStrand	5	chrX	151903844	151903934	SINE	B2_Mm2	B2	chrXB2_Mm2151903728	ProperStrand	5	5	-inf
chr3	100143708	100143768	LINE	L1MD3	L1	chr3L1MD3100143623	ProperStrand	5	chr17	39847477	39847512	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr4	91242867	91242892	LINE	L1Md_T	L1	chr4L1Md_T91237207	ProperStrand	36	chr6	3201505	3201551	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-3.8303
chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	chr11	88456185	88456215	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-3.0430
chr8	8660357	8660425	protein_coding	Efnb2	intron	ENSMUSG00000001300	ProperStrand	23	chr17	70772012	70772090	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	1	-10.3788
chr13	86858898	86858988	LTR	IAPEz-int	ERVK	chr13IAPEz-int86852788	ProperStrand	1	chr13	86859299	86859399	LTR	IAPLTR1a_Mm	ERVK	chr13IAPLTR1a_Mm86859159	ProperStrand	1	1	-inf
chr11	32720515	32720559	protein_coding	1700008A04Rik	exon	ENSMUSG00000020270	NonProperStrand	7	chr18	6481769	6481869	protein_coding	Epc1	intron	ENSMUSG00000024240	ProperStrand	56	1	-16.5807
chr11	69741007	69741097	DNA	Charlie12	MER1_type	chr11Charlie1269740958	ProperStrand	2	chr11	69740402	69741019	SINE	B2_Mm2	B2	chr11B2_Mm269740338	ProperStrand	1	1	-inf
chr8	106673711	106673801	LTR	ORR1C2-int	MaLR	chr8ORR1C2-int106673584	NonProperStrand	1	chr8	106673786	106673885	LTR	ORR1C2	MaLR	chr8ORR1C2106673789	NonProperStrand	1	1	-inf
chr7	47186429	47186519	SINE	PB1D10	Alu	chr7PB1D1047186421	NonProperStrand	4	chr14	33967703	33967803	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	2	-inf
chr13	28080853	28080943	LINE	L1Md_T	L1	chr13L1Md_T28080482	NonProperStrand	1	chr13	13699166	13699266	protein_coding	Lyst	intron	ENSMUSG00000019726	ProperStrand	14	1	-inf
chr6	116557298	116557398	LINE	Lx2A1	L1	chr6Lx2A1116556646	NonProperStrand	1	chr6	116384025	116384116	protein_coding	Alox5	intron	ENSMUSG00000025701	ProperStrand	2	1	-inf
chr8	78807298	78807399	SINE	MIRm	MIR	chr8MIRm78807279	NonProperStrand	1	chr18	16844432	16844482	protein_coding	Cdh2	intron	ENSMUSG00000024304	ProperStrand	5	1	-inf
chr2	18056042	18056141	protein_coding	Mllt10	intron	ENSMUSG00000026743	NonProperStrand	11	chr9	110281285	110281339	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-11.0166
chr13	51654630	51654673	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	33	chr5	142905237	142905328	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	2	-15.0196
chr10	23785269	23785637	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr17	39842997	39843055	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	1	-3.5229
chr8	73284155	73284196	protein_coding	Mpv17l2	intron	ENSMUSG00000035559	ProperStrand	1	chr9	64727216	64727254	protein_coding	Dennd4a	intron	ENSMUSG00000053641	NonProperStrand	54	1	-inf
chr13	35458354	35458454	LTR	MTD	MaLR	chr13MTD35458150	NonProperStrand	1	chr13	35458667	35458757	LTR	RMER5	ERV1	chr13RMER535458438	ProperStrand	1	1	-inf
chr18	56732359	56732394	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	96	chr8	14711490	14711574	protein_coding	Dlgap2	intron	ENSMUSG00000047495	ProperStrand	39	1	-11.9476
chr6	6065708	6065738	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr5	147089202	147089310	protein_coding	Cdk8	intron	ENSMUSG00000029635	ProperStrand	81	2	-14.0242
chr17	39847163	39847196	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	118238006	118238029	SINE	B1F	Alu	chr7B1F118237944	NonProperStrand	1	1	-inf
chr5	149726838	149726854	protein_coding	Katnal1	intron	ENSMUSG00000041298	NonProperStrand	29	chr6	94219005	94219100	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	2	-12.4025
chr17	39846475	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	27462691	27462727	protein_coding	Cyp2b23	intron	ENSMUSG00000040650	NonProperStrand	3	1	-4.3017
chr7	118850626	118850680	protein_coding	Galntl4	intron	ENSMUSG00000038296	ProperStrand	65	chr13	113984747	113984853	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-8.3267
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr14	122376806	122376912	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-5.2612
chr4	40740245	40740281	SINE	B3	B2	chr4B340740192	NonProperStrand	2	chr14	59203238	59203318	Simple_repeat	(CAGAGA)n	Simple_repeat	chr14(CAGAGA)n59203258	ProperStrand	2	2	-inf
chr5	146261249	146261288	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr9	108054454	108054483	protein_coding	Bsn	intron	ENSMUSG00000032589	ProperStrand	35	1	-12.4588
chr8	122003123	122003213	LTR	ORR1D1-int	MaLR	chr8ORR1D1-int122003104	ProperStrand	1	chr8	122003266	122003366	SINE	B1_Mus1	Alu	chr8B1_Mus1122003214	ProperStrand	1	1	-inf
chr9	114561725	114561836	LTR	MTC	MaLR	chr9MTC114561742	NonProperStrand	8	chr9	114561612	114561724	SINE	ID_B1	B4	chr9ID_B1114561592	NonProperStrand	4	4	-inf
chr9	19657967	19658057	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr11	74315341	74315441	protein_coding	Rap1gap2	intron	ENSMUSG00000038807	NonProperStrand	5	1	-15.9351
chr13	97476993	97477083	LTR	RLTR10-int	ERVK	chr13RLTR10-int97477018	NonProperStrand	5	chr13	97476866	97476966	LTR	RLTR10	ERVK	chr13RLTR1097476664	NonProperStrand	3	3	-inf
chr14	70305341	70439560	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	65	chr2	5379238	5511022	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-7.3272
chr1	74530628	74530688	protein_coding	Usp37	intron	ENSMUSG00000033364	NonProperStrand	40	chr1	125393848	125393928	protein_coding	Dpp10	intron	ENSMUSG00000036815	ProperStrand	52	1	-13.1308
chr11	24363656	24363793	lincRNA	Gm12068	intron	ENSMUSG00000087085	ProperStrand	6	chr2	90395155	90395174	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-14.4834
chr7	16316838	16316911	LINE	L1Md_T	L1	chr7L1Md_T16316384	NonProperStrand	1	chr4	121093049	121093132	protein_coding	Gm12886	intron	ENSMUSG00000078576	ProperStrand	16	1	-inf
chr11	5516887	5522017	protein_coding	Ankrd36	intron	ENSMUSG00000020481	ProperStrand	4	chr9	21802899	21803005	protein_coding	Ccdc151	intron	ENSMUSG00000039632	ProperStrand	87	1	-16.9598
chr18	6851907	6851997	LINE	L1Md_F2	L1	chr18L1Md_F26851316	NonProperStrand	1	chr10	122565805	122565905	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-inf
chr17	39846801	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	32241674	32241705	protein_coding	Lcn2	intron	ENSMUSG00000026822	NonProperStrand	3	1	-4.3017
chr14	27323275	27323380	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr9	118674950	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.7494
chr10	23785753	23785821	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr3	90475842	90475895	LINE	Lx9	L1	chr3Lx990474879	ProperStrand	8	1	-14.1976
chr1	156615919	156616037	LINE	L1Md_F2	L1	chr1L1Md_F2156615712	NonProperStrand	3	chr10	49040809	49040831	protein_coding	Grik2	intron	ENSMUSG00000056073	ProperStrand	22	1	-21.7474
chr6	47467548	47467573	protein_coding	Cul1	intron	ENSMUSG00000029686	ProperStrand	18	chr4	56909482	56909580	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	140	1	-12.7656
chr12	59885095	59885195	LINE	Lx	L1	chr12Lx59885084	NonProperStrand	1	chr12	59885491	59885581	LTR	RLTR24	ERV1	chr12RLTR2459885480	NonProperStrand	1	1	-inf
chr4	138884628	138884728	SINE	B1_Mur2	Alu	chr4B1_Mur2138884614	ProperStrand	3	chr4	138884538	138884628	SINE	ID_B1	B4	chr4ID_B1138884525	NonProperStrand	3	3	-inf
chr2	181501014	181501114	protein_coding	Myt1	intron	ENSMUSG00000010505	NonProperStrand	3	chr12	84156060	84156150	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	1	-15.7782
chr12	110630504	110630541	LTR	ORR1A3	MaLR	chr12ORR1A3110630393	ProperStrand	1	chr17	39847919	39847958	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	75243455	75243545	protein_coding-noncoding	Gstt3	exon	ENSMUSG00000001665	ProperStrand	1	chr10	75243169	75243269	protein_coding	Gstt3	intron	ENSMUSG00000001665	ProperStrand	1	1	-inf
mmu-miR-690	0	17	miRNA	mmu-miR-690	.	mmu-miR-690	ProperStrand	5	chr4	153983176	153983252	protein_coding	Prdm16	intron	ENSMUSG00000039410	NonProperStrand	22	1	-20.2749
chr15	100528526	100528542	antisense	1810009N23Rik	.	ENSMUSG00000090062	ProperStrand	8	chr7	27628328	27628474	protein_coding	Cyp2a5	utr3	ENSMUSG00000005547	ProperStrand	12	1	-19.4872
chr14	16381463	16381529	LTR	MuRRS-int	ERV1	chr14MuRRS-int16380752	NonProperStrand	2	chr17	39846726	39846760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr3	69033938	69034031	LTR	MTA_Mm-int	MaLR	chr3MTA_Mm-int69032945	NonProperStrand	4	chr3	69034059	69034095	LTR	MTA_Mm	MaLR	chr3MTA_Mm69034040	NonProperStrand	1	1	-inf
chr7	13526214	13526304	SINE	B1_Mur2	Alu	chr7B1_Mur213526144	NonProperStrand	1	chr7	13526351	13526451	SINE	B2_Mm2	B2	chr7B2_Mm213526379	NonProperStrand	1	1	-inf
chr4	23106606	23106696	LINE	Lx2	L1	chr4Lx223105979	ProperStrand	1	chr4	23106906	23107006	LTR	ORR1C1-int	MaLR	chr4ORR1C1-int23106734	ProperStrand	1	1	-inf
chr3	41590479	41590551	LINE	L1Md_F2	L1	chr3L1Md_F241590299	ProperStrand	7	chr3	41591560	41591642	LINE	L1Md_F2	L1	chr3L1Md_F241591321	ProperStrand	7	2	-inf
chr17	39847207	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	127021410	127021443	SINE	PB1D10	Alu	chr4PB1D10127021384	NonProperStrand	4	1	-4.8204
chr2	144682598	144682729	LTR	ORR1E	MaLR	chr2ORR1E144682567	NonProperStrand	1	chr17	89513059	89513078	protein_coding	Fshr	intron	ENSMUSG00000032937	NonProperStrand	6	1	-inf
chr19	50386933	50387033	protein_coding	Sorcs1	intron	ENSMUSG00000043531	NonProperStrand	8	chr7	103550783	103550873	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-16.5916
chr17	39848599	39848663	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	18992805	18992859	LINE	L1Md_A	L1	chr2L1Md_A18992201	ProperStrand	9	1	-5.1969
chr17	39843481	39843535	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	118462250	118462317	protein_coding	Bub1b	intron	ENSMUSG00000040084	ProperStrand	5	1	-7.4674
chr4	99967642	99967742	protein_coding	Ror1	intron	ENSMUSG00000035305	ProperStrand	128	chr4	46148830	46148920	protein_coding	Tstd2	intron	ENSMUSG00000035495	NonProperStrand	8	1	-14.6463
chr10	82998477	82998550	SINE	B2_Mm2	B2	chr10B2_Mm282998383	ProperStrand	1	chr10	82998627	82998703	SINE	B3A	B2	chr10B3A82998625	NonProperStrand	1	1	-inf
chr17	39842995	39843033	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr1	152567426	152567442	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	1	-4.7119
chr8	66889338	66889458	LINE	L1_Mus1	L1	chr8L1_Mus166889305	NonProperStrand	2	chr19	7183642	7183663	protein_coding	Macrod1	intron	ENSMUSG00000036278	ProperStrand	112	1	-18.2026
chr10	46410546	46410646	LINE	Lx7	L1	chr10Lx746410543	NonProperStrand	1	chr10	46410190	46410280	LINE	MusHAL1	L1	chr10MusHAL146409947	NonProperStrand	1	1	-inf
chrX	127703627	127703717	LTR	MTC	MaLR	chrXMTC127703524	ProperStrand	1	chrX	127703893	127703993	LTR	ORR1A2	MaLR	chrXORR1A2127703795	NonProperStrand	1	1	-inf
chr17	39847780	39847842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	127021410	127021462	SINE	PB1D10	Alu	chr4PB1D10127021384	NonProperStrand	4	1	-3.7035
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr10	119516584	119516612	protein_coding	Grip1	intron	ENSMUSG00000034813	ProperStrand	62	1	-6.5061
chr16	35455092	35455196	protein_coding	Pdia5	intron	ENSMUSG00000022844	ProperStrand	150	chr5	148397591	148397638	protein_coding	Flt1	intron	ENSMUSG00000029648	ProperStrand	93	1	-9.3042
chr18	65005852	65005914	SINE	B3	B2	chr18B365005779	ProperStrand	1	chr18	65007935	65007982	Simple_repeat	(T)n	Simple_repeat	chr18(T)n65007934	ProperStrand	1	1	-inf
chr12	81753021	81753086	protein_coding	Slc39a9	intron	ENSMUSG00000048833	NonProperStrand	63	chr15	86195116	86195154	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-8.6951
chr17	39847840	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	33890339	33890378	LTR	ERVL-E-int	ERVL	chr5ERVL-E-int33890192	NonProperStrand	1	1	-inf
chr11	99006042	99006064	protein_coding	Ccr7	utr3	ENSMUSG00000037944	ProperStrand	29	chr1	72226271	72226361	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-12.8160
chr9	118674952	118675008	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr4	148018935	148019746	protein_coding	Gm572	intron	ENSMUSG00000070577	NonProperStrand	43	1	-6.6300
chr6	3201517	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	20111825	20111899	protein_coding	Klhl24	intron	ENSMUSG00000062901	ProperStrand	54	1	-3.0839
chr7	92743547	92743642	LINE	Lx2	L1	chr7Lx292742142	ProperStrand	3	chr9	123462140	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr14	54622256	54622346	LTR	MTE2b	MaLR	chr14MTE2b54622266	ProperStrand	1	chr14	54622758	54622858	LTR	MTE2b	MaLR	chr14MTE2b54622760	ProperStrand	1	1	-inf
chr16	18533190	18533254	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	chr5	122426960	122426994	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-11.6940
chr11	120613698	120614361	LTR	MuRRS-int	ERV1	chr11MuRRS-int120613825	ProperStrand	17	chr9	123462079	123462177	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr10	105238433	105238514	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	chr18	34937911	34937944	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-11.9942
chr11	105231835	105231891	lincRNA	Gm11638	intron	ENSMUSG00000086487	ProperStrand	21	chr17	24964534	24964634	protein_coding	4930528F23Rik	intron	ENSMUSG00000024155	NonProperStrand	27	1	-15.7708
chr16	23111314	23111368	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr16	13367286	13367350	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	1	-8.0376
chr13	44869596	44869669	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	30	1	-5.8435
chr17	39847997	39848034	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	140242358	140242405	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n140242309	NonProperStrand	1	1	-inf
chr8	120674101	120674166	LTR	RMER15	ERVL	chr8RMER15120673933	NonProperStrand	19	chr5	53588760	53588841	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	1	-12.5981
chr4	27688088	27688178	LINE	L1_Mur3	L1	chr4L1_Mur327687801	NonProperStrand	1	chr4	27688262	27688362	LINE	L1_Mur3	L1	chr4L1_Mur327688091	NonProperStrand	1	1	-inf
chr15	102094413	102094503	LINE	L2c	L2	chr15L2c102094430	NonProperStrand	2	chr15	102094525	102094625	SINE	ID_B1	B4	chr15ID_B1102094508	NonProperStrand	2	2	-inf
chr11	120397480	120397570	protein_coding-noncoding	Gcgr	utr5	ENSMUSG00000025127	NonProperStrand	1	chr11	120397291	120397391	protein_coding	Gcgr	intron	ENSMUSG00000025127	NonProperStrand	4	1	-inf
chr4	147738697	147738797	LTR	MTB	MaLR	chr4MTB147738612	NonProperStrand	2	chr8	80739338	80739428	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	2	-inf
chr17	39847233	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	127216053	127216124	LTR	MTD-int	MaLR	chr2MTD-int127216036	ProperStrand	5	1	-4.3348
chr11	120963428	120963528	LINE	Lx8	L1	chr11Lx8120963386	NonProperStrand	1	chr11	120963533	120963623	SINE	B1_Mus1	Alu	chr11B1_Mus1120963505	ProperStrand	1	1	-inf
chr5	136317748	136333229	protein_coding-noncoding	Srrm3	utr5	ENSMUSG00000039860	NonProperStrand	2	chr5	136317814	136333126	protein_coding	Srrm3	intron	ENSMUSG00000039860	NonProperStrand	42	2	-inf
chr9	82967945	82968035	LINE	Lx7	L1	chr9Lx782967905	NonProperStrand	1	chr9	82967830	82967930	LTR	ORR1A3	MaLR	chr9ORR1A382967562	NonProperStrand	1	1	-inf
chr2	130797506	130797594	protein_coding	Atrn	intron	ENSMUSG00000027312	NonProperStrand	36	chr8	123845152	123845209	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	2	-11.6295
chr9	69150531	69150577	protein_coding	Rora	intron	ENSMUSG00000032238	NonProperStrand	32	chr13	97190563	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.3591
chr17	39846410	39846487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	75573164	75573231	SINE	B3	B2	chr12B375573024	ProperStrand	1	1	-inf
chr17	39847173	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	110331268	110331354	LTR	RLTR25A	ERVK	chr7RLTR25A110331103	NonProperStrand	1	1	-inf
chr11	49397297	49397397	SINE	B1_Mur4	Alu	chr11B1_Mur449397284	NonProperStrand	1	chr10	122565817	122565907	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-inf
chr12	102004090	102004118	SINE	MIR3	MIR	chr12MIR3102003934	ProperStrand	1	chr10	62860562	62860606	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-inf
chr13	97190561	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr9	67197947	67326619	protein_coding	Tln2	intron	ENSMUSG00000052698	ProperStrand	110	2	-6.6621
chr2	44861520	44861610	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	chr6	126054849	126054949	protein_coding	Ntf3	intron	ENSMUSG00000049107	NonProperStrand	3	1	-19.3993
chr5	105809053	105809143	LINE	L1Md_F2	L1	chr5L1Md_F2105808037	NonProperStrand	3	chr5	105809114	105809214	LTR	MYSERV-int	ERVK	chr5MYSERV-int105809123	ProperStrand	1	1	-inf
chr19	53346605	53346641	LINE	L1MC1	L1	chr19L1MC153346492	NonProperStrand	1	chr19	53367185	53367293	LINE	L1MDa	L1	chr19L1MDa53367211	NonProperStrand	4	1	-inf
chr13	23436364	23436425	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	chr15	80082858	80082919	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	1	-10.1138
chr12	105623497	105623966	SINE	MIR	MIR	chr12MIR105623866	NonProperStrand	2	chr12	105626241	105626309	protein_coding	Serpina3m	intron	ENSMUSG00000079012	NonProperStrand	6	2	-inf
chr10	95544705	95544721	SINE	B1_Mus1	Alu	chr10B1_Mus195544573	ProperStrand	1	chr14	31022060	31022126	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	1	-inf
chr9	123462127	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	63445949	63445968	protein_coding	Herc2	intron	ENSMUSG00000030451	ProperStrand	5	1	-5.8308
chr4	42975821	42975911	LINE	L1MEc	L1	chr4L1MEc42975840	NonProperStrand	3	chr4	42975715	42975816	SINE	B1_Mur4	Alu	chr4B1_Mur442975692	NonProperStrand	3	3	-inf
chr8	91602142	91602232	SINE	ID	ID	chr8ID91602162	NonProperStrand	7	chr8	91602301	91602401	SINE	MIRb	MIR	chr8MIRb91602282	NonProperStrand	2	2	-inf
chr14	122760150	122760205	protein_coding	Clybl	intron	ENSMUSG00000025545	ProperStrand	59	chr14	33967620	33967718	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-11.5813
chr11	102317477	102317577	protein_coding-noncoding	Itga2b	utr3	ENSMUSG00000034664	ProperStrand	6	chr11	102317651	102317741	protein_coding	Itga2b	intron	ENSMUSG00000034664	ProperStrand	11	1	-inf
chr17	33550603	33551036	LINE	L1_Mus2	L1	chr17L1_Mus233549480	ProperStrand	3	chr17	33551039	33551139	LINE	Lx	L1	chr17Lx33550790	ProperStrand	5	2	-inf
chr17	39847216	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	113074135	113074623	protein_coding	Setd5	intron	ENSMUSG00000034269	NonProperStrand	20	2	-3.2818
chr18	21153693	21153793	SINE	B1_Mus1	Alu	chr18B1_Mus121153682	NonProperStrand	1	chr18	21153317	21153407	SINE	B2_Mm2	B2	chr18B2_Mm221153295	NonProperStrand	1	1	-inf
chr10	105238418	105238521	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	chr13	44869574	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	4	-15.9761
chr11	106784100	106784418	SINE	ID4	ID	chr11ID4106784085	ProperStrand	1	chr9	123461840	123461878	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	21831412	21831453	protein_coding	Elavl3	intron	ENSMUSG00000003410	ProperStrand	162	1	-4.8654
chr9	19645384	19645457	LINE	L1Md_F2	L1	chr9L1Md_F219641267	NonProperStrand	2	chr9	78479046	78479109	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-14.9618
chr12	98808526	98808608	LINE	L1Md_F2	L1	chr12L1Md_F298805005	NonProperStrand	1	chr12	98810378	98810410	LINE	L1Md_F2	L1	chr12L1Md_F298810018	NonProperStrand	1	1	-inf
chr6	118519638	118519697	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm118519634	NonProperStrand	1	chr8	72859213	72859257	protein_coding	Upf1	exon	ENSMUSG00000058301	ProperStrand	2	1	-inf
chr7	47188537	47188568	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr6	85658248	85658312	protein_coding	Gm4477	intron	ENSMUSG00000089694	NonProperStrand	2	1	-18.7895
chr7	29155780	29155945	protein_coding-noncoding	Plekhg2	utr3	ENSMUSG00000037552	ProperStrand	2	chr7	29155301	29155718	protein_coding	Plekhg2	exon	ENSMUSG00000037552	ProperStrand	4	1	-22.1285
chr17	39847659	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	102409278	102409331	Simple_repeat	(TTTC)n	Simple_repeat	chrX(TTTC)n102409274	NonProperStrand	1	1	-inf
chr17	39847438	39847576	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	63990657	63990674	LTR	RMER16-int	ERVK	chr3RMER16-int63990653	ProperStrand	1	1	-inf
chr3	62496740	62496795	LINE	L1Md_F2	L1	chr3L1Md_F262495960	ProperStrand	2	chr11	85586617	85586663	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-16.9384
chr17	34949833	34949933	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr18	5621612	5621702	sense_intronic	RP23-345J21.1	.	ENSMUSG00000093717	ProperStrand	12	3	-inf
chr6	3201469	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	8767183	8767201	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	1	-3.5427
chr17	47898699	47898749	protein_coding	Tfeb	intron	ENSMUSG00000023990	NonProperStrand	85	chr1	136624759	136624819	protein_coding	Syt2	intron	ENSMUSG00000026452	ProperStrand	51	1	-11.6498
chr1	96818906	96818945	LINE	L1Md_A	L1	chr1L1Md_A96818049	NonProperStrand	1	chr8	91649462	91649556	LINE	L1_Mur3	L1	chr8L1_Mur391649117	ProperStrand	1	1	-inf
chr18	45258900	45258990	LINE	Lx7	L1	chr18Lx745258417	NonProperStrand	1	chr18	45259144	45259244	LINE	Lx7	L1	chr18Lx745259046	NonProperStrand	1	1	-inf
chr4	34417776	34417876	LINE	Lx7	L1	chr4Lx734417310	ProperStrand	1	chr4	34418107	34418197	LINE	Lx7	L1	chr4Lx734417884	NonProperStrand	1	1	-inf
chr8	118860431	118860501	LTR	ORR1E	MaLR	chr8ORR1E118860351	ProperStrand	1	chr8	118864408	118864456	SINE	B1F1	Alu	chr8B1F1118864322	ProperStrand	1	1	-inf
chr14	40905683	40905783	LTR	MTEa	MaLR	chr14MTEa40905564	ProperStrand	5	chr14	40905821	40905911	LTR	RLTR15	ERVK	chr14RLTR1540905764	NonProperStrand	5	5	-inf
chr2	117181314	117181398	SINE	B1_Mus1	Alu	chr2B1_Mus1117181281	NonProperStrand	1	chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-inf
chr17	39847102	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	107951427	107951451	LTR	MLT1K	MaLR	chr6MLT1K107951207	ProperStrand	1	1	-inf
chr6	134272466	134272543	LTR	ORR1A2	MaLR	chr6ORR1A2134272365	NonProperStrand	1	chr6	134274560	134274583	LTR	RLTR28	ERVL	chr6RLTR28134274443	NonProperStrand	1	1	-inf
chr6	87925685	87925747	LTR	MERVL-int	ERVL	chr6MERVL-int87921564	ProperStrand	2	chr13	44869597	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr17	39847179	39847206	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	8851420	8851519	protein_coding	Taf6l	intron	ENSMUSG00000003680	NonProperStrand	5	1	-4.3348
chr10	88766917	88767039	LINE	L1Md_F2	L1	chr10L1Md_F288765823	ProperStrand	5	chr9	123462122	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr13	30506067	30506167	LINE	L1_Mur3	L1	chr13L1_Mur330505250	NonProperStrand	1	chr13	30506452	30506542	LINE	Lx6	L1	chr13Lx630506264	NonProperStrand	1	1	-inf
chr2	58486337	58486375	protein_coding-noncoding	Upp2	utr5	ENSMUSG00000026839	NonProperStrand	1	chr2	58489957	58490069	protein_coding	Upp2	intron	ENSMUSG00000026839	NonProperStrand	62	1	-inf
chr6	135191206	135191296	protein_coding	8430419L09Rik	intron	ENSMUSG00000030207	ProperStrand	4	chr16	8559037	8559137	protein_coding	Abat	intron	ENSMUSG00000057880	NonProperStrand	19	3	-26.9727
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	136550300	136550316	protein_coding	Snap25	intron	ENSMUSG00000027273	NonProperStrand	3	1	-13.1573
chr7	6627341	6627384	SINE	PB1D7	Alu	chr7PB1D76627258	NonProperStrand	1	chr6	124704560	124704621	protein_coding	Atn1	intron	ENSMUSG00000004263	ProperStrand	17	1	-inf
chr5	146261266	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr17	35001471	35001489	protein_coding	Gm20547	exon	ENSMUSG00000092511	NonProperStrand	14	1	-10.8310
chr2	180202472	180206733	protein_coding-noncoding	Slco4a1	utr5	ENSMUSG00000038963	NonProperStrand	1	chr2	180206750	180206815	protein_coding	Slco4a1	exon	ENSMUSG00000038963	NonProperStrand	161	1	-inf
chr5	114883771	114883861	protein_coding	Mmab	intron	ENSMUSG00000029575	NonProperStrand	2	chr4	107180169	107180269	protein_coding	Glis1	intron	ENSMUSG00000034762	ProperStrand	30	1	-21.6628
chr3	55628589	55630154	protein_coding	Nbea	intron	ENSMUSG00000027799	NonProperStrand	17	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.9833
chr4	43390077	43390176	LTR	RLTR20C	ERVK	chr4RLTR20C43390022	NonProperStrand	1	chr4	43389884	43389974	SINE	B2_Mm2	B2	chr4B2_Mm243389861	NonProperStrand	1	1	-inf
chr6	82764016	82764070	LTR	MTC	MaLR	chr6MTC82763769	ProperStrand	1	chr11	116680060	116680132	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	93	1	-inf
chr11	33597816	33597863	antisense	Gm12119	.	ENSMUSG00000085240	ProperStrand	1	chr11	33597883	33597994	protein_coding	Kcnip1	intron	ENSMUSG00000053519	NonProperStrand	100	1	-inf
chr12	49009922	49009983	LINE	L1M2	L1	chr12L1M249009810	NonProperStrand	1	chr6	71882555	71882649	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-inf
chr4	107342162	107342189	DNA	URR1B	MER1_type	chr4URR1B107342127	NonProperStrand	1	chr17	39846718	39846800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	117202570	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr6	3201493	3201534	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-4.4507
chr2	22744876	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chrX	38450266	38450384	LINE	L1Md_A	L1	chrXL1Md_A38447590	NonProperStrand	8	4	-20.4197
chr11	50325059	50325149	LTR	MTD	MaLR	chr11MTD50325066	NonProperStrand	3	chr17	39847029	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr5	73737697	73737797	Low_complexity	GA-rich	Low_complexity	chr5GA-rich73737701	NonProperStrand	1	chr5	73737789	73737879	SINE	B3A	B2	chr5B3A73737781	NonProperStrand	1	1	-inf
mmu-miR-5100	4	20	miRNA	mmu-miR-5100	.	mmu-miR-5100	ProperStrand	1	chr3	31104220	31104351	protein_coding	Slc7a14	utr3	ENSMUSG00000069072	NonProperStrand	43	1	-inf
chr7	80036887	80036965	LINE	L1_Mus3	L1	chr7L1_Mus380036184	NonProperStrand	3	chr5	146952825	146952842	LTR	ORR1C2	MaLR	chr5ORR1C2146952569	ProperStrand	1	1	-inf
chr17	66526485	66526585	LTR	MYSERV16_I-int	ERVK	chr17MYSERV16_I-int66526172	NonProperStrand	2	chr18	57547026	57547116	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	2	-inf
chr1	89010082	89010100	LTR	MER57A-int	ERV1	chr1MER57A-int89010021	ProperStrand	2	chr11	95287941	95288064	protein_coding	Spop	intron	ENSMUSG00000057522	NonProperStrand	27	2	-inf
chr10	77842614	77842704	LTR	MTD	MaLR	chr10MTD77842544	NonProperStrand	2	chr10	77651372	77651472	protein_coding	Trappc10	intron	ENSMUSG00000000374	NonProperStrand	5	1	-inf
chr10	113578629	113578647	LINE	Lx4A	L1	chr10Lx4A113578560	ProperStrand	1	chr6	30739193	30739280	protein_coding	Copg2	intron	ENSMUSG00000025607	NonProperStrand	26	1	-inf
chr13	108352706	108352740	LTR	ERVL-B4-int	ERVL	chr13ERVL-B4-int108352631	ProperStrand	2	chr13	109350124	109350229	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-15.4433
chr18	61716225	61745900	protein_coding-noncoding	Csnk1a1	utr5	ENSMUSG00000024576	NonProperStrand	3	chr18	61716142	61746158	protein_coding	Csnk1a1	intron	ENSMUSG00000024576	NonProperStrand	46	3	-inf
chr11	20077568	20077608	LINE	L1_Mus3	L1	chr11L1_Mus320077362	NonProperStrand	2	chr19	38885213	38885307	protein_coding	Noc3l	intron	ENSMUSG00000024999	NonProperStrand	2	1	-19.8939
chr1	65591609	65591709	LTR	MLT1E2	MaLR	chr1MLT1E265591623	NonProperStrand	1	chr11	33781585	33781675	protein_coding	Kcnip1	intron	ENSMUSG00000053519	NonProperStrand	100	1	-inf
chrX	74015286	74015376	LINE	L1VL1	L1	chrXL1VL174014520	NonProperStrand	2	chrX	74017235	74017335	LINE	L1VL1	L1	chrXL1VL174016297	NonProperStrand	4	1	-22.1285
chr8	121803442	121803528	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	chr11	73083489	73083533	protein_coding	Trpv3	intron	ENSMUSG00000043029	NonProperStrand	6	1	-13.4014
chr14	73520519	73520609	LINE	Lx9	L1	chr14Lx973520534	ProperStrand	1	chr14	73520640	73520740	LINE	Lx9	L1	chr14Lx973520641	ProperStrand	1	1	-inf
chr18	48319249	48319339	LINE	Lx7	L1	chr18Lx748319161	NonProperStrand	1	chr18	46698085	46698185	LTR	MTB	MaLR	chr18MTB46697787	ProperStrand	1	1	-inf
chr9	13603196	13603296	protein_coding	Mtmr2	intron	ENSMUSG00000031918	NonProperStrand	4	chr9	13464138	13464228	protein_coding	Maml2	intron	ENSMUSG00000031925	ProperStrand	6	1	-inf
chr6	3201469	3201511	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	78509005	78509079	protein_coding	Nlk	intron	ENSMUSG00000017376	ProperStrand	15	1	-5.5348
chr17	70963685	70963763	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	150914265	150914300	protein_coding	Gm14151	exon	ENSMUSG00000079006	NonProperStrand	4	1	-11.8544
chr8	27275143	27275182	LTR	RLTR11A	ERVK	chr8RLTR11A27274868	NonProperStrand	16	chr6	128433593	128434306	protein_coding	Pzp	utr3	ENSMUSG00000030359	ProperStrand	55	1	-14.8837
chr11	59684903	59684982	protein_coding	Nt5m	intron	ENSMUSG00000032615	ProperStrand	23	chr10	63318465	63318489	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-11.6836
chr15	9169973	9170073	LINE	L1_Mur1	L1	chr15L1_Mur19169992	NonProperStrand	1	chr15	9169800	9169890	LTR	MTD	MaLR	chr15MTD9169802	ProperStrand	1	1	-inf
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr14	24493474	24495782	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-5.0873
chr4	119281614	119281643	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	chr4	59753464	59753529	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	ProperStrand	123	1	-9.1743
chr2	5379296	5379340	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr6	71882658	71882692	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-3.1381
chr4	145640077	145640177	SINE	B3	B2	chr4B3145640039	ProperStrand	1	chr4	147275030	147275120	protein_coding	Mfn2	intron	ENSMUSG00000029020	ProperStrand	3	1	-inf
chr10	14676024	14684135	LTR	ORR1B2	MaLR	chr10ORR1B214683876	ProperStrand	1	chr10	14668085	14676010	LTR	RMER15	ERVL	chr10RMER1514675835	ProperStrand	1	1	-inf
chr3	8982548	8982580	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	chr5	142903875	142903916	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-5.2526
chr1	161037603	161037675	LINE	L1MEc	L1	chr1L1MEc161037551	ProperStrand	11	chr11	106066843	106066865	protein_coding	Ccdc47	intron	ENSMUSG00000078622	NonProperStrand	4	1	-inf
chr5	135486879	135486968	protein_coding-noncoding	Abhd11	utr5	ENSMUSG00000040532	NonProperStrand	1	chr18	77781085	77781259	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-inf
chr2	127863156	127863175	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	chr6	134494123	134494255	protein_coding	Lrp6	intron	ENSMUSG00000030201	ProperStrand	57	2	-20.2820
chr13	44808380	44808480	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int44808386	NonProperStrand	1	chr13	44808287	44808377	LTR	MTA_Mm	MaLR	chr13MTA_Mm44807990	NonProperStrand	1	1	-inf
chr1	171503045	171503136	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr9	123461965	123462108	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.7764
chr8	66944365	66944455	LINE	L1_Mus3	L1	chr8L1_Mus366944009	ProperStrand	2	chr12	43033412	43033512	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	2	-inf
chr4	138073920	138074020	SINE	B2_Mm1t	B2	chr4B2_Mm1t138073934	NonProperStrand	1	chr4	138073797	138073887	SINE	B2_Mm2	B2	chr4B2_Mm2138073801	NonProperStrand	1	1	-inf
chr7	48137558	48137581	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n48137555	NonProperStrand	1	chr19	43906126	43906225	protein_coding	Abcc2	intron	ENSMUSG00000025194	NonProperStrand	51	1	-inf
chr1	135517436	135517487	protein_coding	Zc3h11a	utr3	ENSMUSG00000026464	ProperStrand	33	chr19	32220406	32220496	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-11.2737
chr17	39848008	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	13566342	13566358	protein_coding	Tram1	intron	ENSMUSG00000025935	NonProperStrand	4	1	-3.7035
chr19	46198662	46198752	LINE	L1MC	L1	chr19L1MC46198556	NonProperStrand	1	chr16	10633602	10633702	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	1	-inf
chr17	70985437	70985531	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr5	132418499	132418552	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-3.7445
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr5	92856408	92856436	protein_coding	Nup54	intron	ENSMUSG00000034826	NonProperStrand	10	1	-10.2130
chr14	19278161	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr9	22611916	22612020	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	126	1	-10.0575
chr7	80022283	80022392	SINE	B3	B2	chr7B380022277	NonProperStrand	1	chr9	123462046	123462084	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	20651833	20660048	protein_coding-noncoding	Psmd2	utr5	ENSMUSG00000006998	ProperStrand	11	chr16	20652607	20660370	protein_coding	Psmd2	utr5	ENSMUSG00000006998	ProperStrand	34	6	-inf
chr11	68826378	68826488	LINE	L1Md_F2	L1	chr11L1Md_F268826331	NonProperStrand	2	chr11	68822832	68822861	protein_coding	Pfas	intron	ENSMUSG00000020899	ProperStrand	51	1	-20.9863
chr11	110447005	110447088	LINE	Lx5	L1	chr11Lx5110446499	ProperStrand	3	chr17	56614029	56614184	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	1	-16.3755
chr17	39844630	39844705	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr11	35776369	35777569	protein_coding	Wwc1	intron	ENSMUSG00000018849	NonProperStrand	21	1	-4.5171
chr17	27025296	27025326	antisense	Gm20468	.	ENSMUSG00000092539	ProperStrand	19	chr2	120584093	120584190	protein_coding	Ttbk2	intron	ENSMUSG00000090100	NonProperStrand	17	1	-16.8639
chr18	33818328	33818407	SINE	B3	B2	chr18B333818202	NonProperStrand	1	chr5	93114751	93114820	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	1	-inf
chr4	84370409	84370440	LINE	HAL1-3A_ME	L1	chr4HAL1-3A_ME84370375	ProperStrand	1	chr4	84370743	84370764	SINE	PB1D10	Alu	chr4PB1D1084370700	ProperStrand	1	1	-inf
chr16	36772028	36772044	protein_coding	Slc15a2	utr3	ENSMUSG00000022899	ProperStrand	16	chr13	97190605	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chr11	88644488	88644540	LTR	MTD	MaLR	chr11MTD88644196	NonProperStrand	3	chr8	78507502	78507532	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	1	-18.1213
chr17	39847378	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	107362164	107362192	LTR	LTR33	ERVL	chr7LTR33107362057	NonProperStrand	1	1	-inf
chr4	148515441	148515540	DNA	MER63D	AcHobo	chr4MER63D148515462	NonProperStrand	1	chr4	148514625	148514682	Simple_repeat	(CAAA)n	Simple_repeat	chr4(CAAA)n148514631	ProperStrand	1	1	-inf
chr15	81358412	81358491	LTR	RMER17B	ERVK	chr15RMER17B81358356	ProperStrand	1	chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39847006	39847065	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	170589439	170589486	Other	RMER1B	Other	chr1RMER1B170589387	ProperStrand	1	1	-inf
chr7	140027793	140027847	protein_coding	Mettl10	intron	ENSMUSG00000030960	ProperStrand	18	chr11	33231849	33231917	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-9.8748
chr6	136610279	136610315	protein_coding	Plbd1	utr5	ENSMUSG00000030214	NonProperStrand	39	chr11	88844606	88844669	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	1	-11.9896
chr1	93479442	93479571	LTR	MTC	MaLR	chr1MTC93479319	NonProperStrand	4	chr2	90537333	90537355	protein_coding	Nup160	intron	ENSMUSG00000051329	NonProperStrand	92	1	-16.8551
chr14	100668471	100668561	DNA	URR1A	MER1_type	chr14URR1A100668418	NonProperStrand	1	chr14	100668191	100668291	LINE	L1M5	L1	chr14L1M5100668184	NonProperStrand	1	1	-inf
chr8	105605252	105605269	LINE	L1Md_T	L1	chr8L1Md_T105603228	ProperStrand	1	chr1	64736100	64736233	antisense	2810408I11Rik	.	ENSMUSG00000087213	ProperStrand	99	1	-inf
chr15	25761592	25761692	LINE	L1MC4	L1	chr15L1MC425761480	NonProperStrand	1	chr15	19875281	19875371	LINE	L1Md_F	L1	chr15L1Md_F19874532	NonProperStrand	1	1	-inf
chr7	16325930	16326020	LINE	Lx2B	L1	chr7Lx2B16325797	ProperStrand	1	chr7	16326110	16326210	LINE	Lx2B	L1	chr7Lx2B16326118	ProperStrand	1	1	-inf
chr5	86112491	86112599	LINE	L1Md_T	L1	chr5L1Md_T86109057	ProperStrand	3	chr9	123462115	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr4	94741119	94741141	antisense	BC042782	.	ENSMUSG00000087366	ProperStrand	12	chr5	113310081	113310208	protein_coding	Myo18b	intron	ENSMUSG00000072720	ProperStrand	234	2	-23.6124
chr17	39847161	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	99926129	99926145	protein_coding	Rab30	intron	ENSMUSG00000030643	ProperStrand	3	1	-5.4882
chr9	100940965	100941065	LTR	RMER19B	ERVK	chr9RMER19B100940832	ProperStrand	1	chr9	100940738	100940828	SINE	B3A	B2	chr9B3A100940668	NonProperStrand	1	1	-inf
chr17	39846407	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	44528850	44528872	LTR	RLTR4_MM-int	ERV1	chr5RLTR4_MM-int44526295	ProperStrand	1	1	-inf
chr17	39847623	39847655	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	71586930	71590197	LTR	RLTR20B3	ERVK	chr1RLTR20B371589258	NonProperStrand	2	1	-5.4040
chr14	21645237	21645287	SINE	B4A	B4	chr14B4A21645208	ProperStrand	1	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr19	10003210	10003300	SINE	B3	B2	chr19B310003219	ProperStrand	1	chr19	10003507	10003607	SINE	B4	B4	chr19B410003458	ProperStrand	1	1	-inf
chr7	81869676	81869770	LINE	L1MEf	L1	chr7L1MEf81869703	ProperStrand	1	chr7	81869912	81869958	LINE	L1_Mus1	L1	chr7L1_Mus181869918	NonProperStrand	1	1	-inf
chr12	86509550	86509650	protein_coding	Pgf	intron	ENSMUSG00000004791	NonProperStrand	195	chr12	110695649	110696310	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-6.8476
chr10	40258626	40258676	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr10	67819280	67819298	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n67819263	ProperStrand	1	1	-inf
chr3	145808642	145808732	LINE	L1MC2	L1	chr3L1MC2145807914	ProperStrand	1	chr3	145808756	145808856	LTR	MLT1A	MaLR	chr3MLT1A145808752	NonProperStrand	3	1	-inf
chr10	81508832	81508932	Unknown	MurSatRep1	Unknown	chr10MurSatRep181508724	NonProperStrand	1	chr10	81509136	81509226	Unknown	MurSatRep1	Unknown	chr10MurSatRep181509087	NonProperStrand	1	1	-inf
chr10	38393935	38394025	LINE	L1_Mus1	L1	chr10L1_Mus138393600	ProperStrand	1	chr10	38393384	38393484	LTR	ORR1A1	MaLR	chr10ORR1A138393254	ProperStrand	1	1	-inf
chr13	44869585	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	33755082	33755104	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	1	-5.4836
chr17	39844024	39844053	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr4	117202605	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	1	-5.6047
chr18	32093533	32093556	protein_coding	Lims2	intron	ENSMUSG00000024395	ProperStrand	16	chr7	133099056	133099171	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-7.8191
chrX	155050029	155050119	LTR	MTD	MaLR	chrXMTD155049831	NonProperStrand	1	chrX	155049738	155049838	LTR	ORR1B1	MaLR	chrXORR1B1155049715	ProperStrand	1	1	-inf
chr3	135556895	135556980	LINE	Lx	L1	chr3Lx135555939	NonProperStrand	6	chr5	146261160	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-9.7631
chr1	119633827	119633921	LINE	L1Md_F	L1	chr1L1Md_F119632791	NonProperStrand	1	chr17	39846450	39846503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	98063493	98063544	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	1	-9.7517
chr5	133241043	133241143	LTR	ORR1E	MaLR	chr5ORR1E133240923	NonProperStrand	1	chr5	133241322	133241412	SINE	B3A	B2	chr5B3A133241291	ProperStrand	1	1	-inf
chr3	65299622	65302154	SINE	B1_Mur1	Alu	chr3B1_Mur165299494	NonProperStrand	1	chr12	79432234	79432317	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr6	12822962	12823030	LINE	L1Md_T	L1	chr6L1Md_T12818979	NonProperStrand	1	chr8	104258418	104258485	LINE	L1_Mur2	L1	chr8L1_Mur2104258063	ProperStrand	2	1	-inf
chr3	136833751	136833793	LINE	Lx9	L1	chr3Lx9136833654	ProperStrand	9	chr6	55379700	55379718	LTR	ORR1A0	MaLR	chr6ORR1A055379671	ProperStrand	1	1	-inf
chr2	139881124	139881248	protein_coding	Tasp1	intron	ENSMUSG00000039033	ProperStrand	40	chr13	97190546	97190578	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.9165
chr2	106775498	106775588	LTR	ORR1B2-int	MaLR	chr2ORR1B2-int106775267	ProperStrand	1	chr2	106775159	106775259	SINE	B1_Mus2	Alu	chr2B1_Mus2106775150	ProperStrand	1	1	-inf
chr17	39846809	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	73963771	73963869	protein_coding	Me2	intron	ENSMUSG00000024556	NonProperStrand	1	1	-inf
chr3	87086571	87088172	LINE	L1Md_F2	L1	chr3L1Md_F287085258	NonProperStrand	11	chr10	81181249	81181275	SINE	B1_Mur2	Alu	chr10B1_Mur281181201	NonProperStrand	29	1	-16.9195
chr6	131371837	131371895	LINE	Lx6	L1	chr6Lx6131370997	ProperStrand	3	chr17	39846684	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chrX	18166589	18166663	LINE	L1Md_T	L1	chrXL1Md_T18162319	ProperStrand	11	chrX	18166774	18166804	LINE	L1Md_T	L1	chrXL1Md_T18166736	ProperStrand	1	1	-inf
chr5	73491172	73491190	protein_coding-noncoding	Fryl	utr3	ENSMUSG00000070733	NonProperStrand	2	chr5	73491216	73491265	protein_coding	Fryl	exon	ENSMUSG00000070733	NonProperStrand	82	1	-18.7772
chr9	123462112	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	8003342	8003415	protein_coding	Gm3739	intron	ENSMUSG00000091472	NonProperStrand	23	2	-4.9293
chr17	39847477	39847515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	24709491	24709539	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n24709495	ProperStrand	1	1	-inf
chr9	123461931	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	121702044	121702094	protein_coding	Cyp2r1	intron	ENSMUSG00000030670	ProperStrand	5	1	-5.8308
chr1	8940778	8940868	protein_coding-noncoding	Sntg1	utr3	ENSMUSG00000025909	NonProperStrand	3	chr1	8940900	8941000	protein_coding	Sntg1	intron	ENSMUSG00000025909	NonProperStrand	23	3	-inf
chr8	71964871	71964961	LINE	L1_Mur2	L1	chr8L1_Mur271963609	ProperStrand	9	chr8	71964966	71965066	LINE	Lx5	L1	chr8Lx571964940	ProperStrand	5	3	-inf
chr9	99579421	99579511	DNA	FordPrefect	Tip100	chr9FordPrefect99579405	ProperStrand	1	chr9	99579226	99579326	LTR	RMER5	ERV1	chr9RMER599579168	NonProperStrand	1	1	-inf
chr17	39846453	39846514	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	143224836	143224895	LTR	MLT2F	ERVL	chr7MLT2F143224660	NonProperStrand	1	1	-inf
chr11	68756146	68756260	LINE	L2c	L2	chr11L2c68756068	ProperStrand	1	chr8	79146419	79146449	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	1	-inf
chr10	105783036	105783139	LINE	Lx	L1	chr10Lx105782081	NonProperStrand	3	chr17	39846813	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	57646527	57646632	protein_coding	Pfn2	utr3	ENSMUSG00000027805	ProperStrand	4	1	-6.3300
chr7	5177928	5177997	LTR	MERVL-int	ERVL	chr7MERVL-int5174951	ProperStrand	1	chr5	138167331	138167410	SINE	B3A	B2	chr5B3A138167233	NonProperStrand	19	1	-inf
chr19	54005734	54005817	lincRNA	Bbip1	exon	ENSMUSG00000084957	NonProperStrand	6	chr7	4650051	4650096	protein_coding	Brsk1	intron	ENSMUSG00000035390	NonProperStrand	13	1	-inf
chr1	136364890	136364950	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr11	61734940	61734992	protein_coding	Akap10	intron	ENSMUSG00000047804	ProperStrand	9	1	-14.2695
chr4	43581391	43581481	protein_coding-noncoding	Gba2	utr3	ENSMUSG00000028467	ProperStrand	1	chr4	43581068	43581168	protein_coding	Gba2	exon	ENSMUSG00000028467	ProperStrand	1	1	-inf
chr19	22886746	22886846	protein_coding	Trpm3	intron	ENSMUSG00000052387	NonProperStrand	79	chr19	22876909	22876999	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	36	1	-12.5018
chr7	116260122	116260222	LINE	L1MA8	L1	chr7L1MA8116260085	NonProperStrand	1	chr3	103138423	103138513	protein_coding	Trim33	intron	ENSMUSG00000033014	ProperStrand	59	1	-inf
chrX	129842106	129842139	LINE	L1Md_F2	L1	chrXL1Md_F2129841721	NonProperStrand	3	chr8	127249628	127249671	protein_coding	Arv1	intron	ENSMUSG00000031982	ProperStrand	4	1	-inf
chr7	76781304	76781404	LINE	L1Md_F2	L1	chr7L1Md_F276781332	ProperStrand	2	chr7	76781097	76781187	LINE	L1Md_F3	L1	chr7L1Md_F376780355	NonProperStrand	2	2	-inf
chr17	39848599	39848699	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	68138848	68138938	LTR	ORR1A4-int	MaLR	chr7ORR1A4-int68138756	ProperStrand	1	1	-inf
chr17	39848125	39848200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	52068742	52068761	lincRNA	Gm16767	exon	ENSMUSG00000086318	NonProperStrand	1	1	-inf
chr13	30710352	30710442	lincRNA	4930519D14Rik	intron	ENSMUSG00000086263	NonProperStrand	3	chr4	40940702	40940802	protein_coding	Nfx1	intron	ENSMUSG00000028423	NonProperStrand	22	1	-21.7474
chr11	102895499	102895770	protein_coding	Nmt1	intron	ENSMUSG00000020936	NonProperStrand	24	chr15	7920423	7920523	protein_coding	Wdr70	intron	ENSMUSG00000039828	ProperStrand	93	1	-12.9992
chr8	114774930	114775014	LINE	Lx7	L1	chr8Lx7114774922	NonProperStrand	10	chr17	39846784	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-3.6091
chr17	39847442	39848005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	72226324	72255195	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	10	-3.7038
chr16	35981607	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr13	44869574	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	17	-20.5498
chr7	16384130	16384162	LTR	IAP-d-int	ERVK	chr7IAP-d-int16384138	NonProperStrand	2	chr7	16387065	16387136	LTR	RLTR10-int	ERVK	chr7RLTR10-int16387053	NonProperStrand	2	1	-19.8939
chr3	102615950	102616040	LINE	L1Md_T	L1	chr3L1Md_T102615903	NonProperStrand	1	chr3	102615634	102615734	SINE	B2_Mm2	B2	chr3B2_Mm2102615582	NonProperStrand	1	1	-inf
chr11	62267680	62267750	protein_coding	Ncor1	intron	ENSMUSG00000018501	NonProperStrand	20	chr13	97190580	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.3035
chr17	39847551	39847578	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	61284188	61284205	Simple_repeat	(CACTA)n	Simple_repeat	chr11(CACTA)n61284066	ProperStrand	1	1	-inf
chr10	83438378	83438459	LTR	MTE2b	MaLR	chr10MTE2b83438229	ProperStrand	9	chr9	123462101	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr7	123313294	123313353	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	chr17	3081592	3081684	pseudogene	Pisd-ps2	.	ENSMUSG00000023795	ProperStrand	15	1	-12.5727
chr13	56161862	56161952	LINE	L1MB8	L1	chr13L1MB856161868	ProperStrand	1	chr13	56162280	56162380	LTR	ORR1A2	MaLR	chr13ORR1A256162145	NonProperStrand	1	1	-inf
chr15	34132737	34132835	LTR	RLTR20B3	ERVK	chr15RLTR20B334132698	ProperStrand	1	chr9	3419697	3419787	protein_coding	Cwf19l2	intron	ENSMUSG00000025898	ProperStrand	36	1	-inf
chr17	85135895	85135985	protein_coding	Lrpprc	intron	ENSMUSG00000024120	NonProperStrand	54	chr17	85459103	85459203	protein_coding	Slc3a1	exon	ENSMUSG00000024131	NonProperStrand	1	1	-inf
chrX	102841122	102841212	LINE	Lx	L1	chrXLx102839387	ProperStrand	1	chr15	72994486	72994586	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	1	-inf
chr17	39845142	39845170	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	12	chr9	123461811	123461849	protein_coding	Sacm1l	exon	ENSMUSG00000025240	NonProperStrand	27	2	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	66411807	66411924	protein_coding	Usp3	intron	ENSMUSG00000032376	NonProperStrand	21	1	-8.6792
chr12	83531524	83531653	protein_coding	Sipa1l1	intron	ENSMUSG00000042700	ProperStrand	61	chr17	30440337	30440363	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-7.2075
chr17	35157431	35157536	protein_coding	D17H6S56E-3	intron	ENSMUSG00000007030	NonProperStrand	151	chr16	22657267	22657286	protein_coding	Dgkg	utr5	ENSMUSG00000022861	ProperStrand	8	1	-14.3136
chr2	154418088	154418168	protein_coding	Pxmp4	intron	ENSMUSG00000000876	ProperStrand	10	chr7	133066894	133066954	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-8.7926
chr18	30316894	30316928	LINE	L1Md_F2	L1	chr18L1Md_F230316292	NonProperStrand	1	chr18	30312594	30316846	LINE	Lx8	L1	chr18Lx830312263	NonProperStrand	1	1	-inf
chr1	54994449	54995405	LINE	Lx8	L1	chr1Lx854994930	NonProperStrand	5	chr3	85987257	85987342	SINE	ID_B1	B4	chr3ID_B185987200	ProperStrand	2	2	-inf
chr15	84076781	84076856	protein_coding	Parvb	intron	ENSMUSG00000022438	NonProperStrand	30	chr7	29994622	29994648	protein_coding	Catsperg1	intron	ENSMUSG00000049676	NonProperStrand	19	1	-15.7510
chr19	5109356	5109537	protein_coding	Klc2	exon	ENSMUSG00000024862	ProperStrand	8	chr9	123461901	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr4	116804092	116804161	protein_coding	Plk3	intron	ENSMUSG00000028680	ProperStrand	12	chr9	110281285	110281342	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-10.8346
chr1	71045941	71046003	DNA	MER102a	MER1_type	chr1MER102a71045826	ProperStrand	1	chr1	118926019	118926082	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n118926000	NonProperStrand	4	1	-inf
chr17	39847191	39847268	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	12143017	12179194	protein_coding	6030446N20Rik	intron	ENSMUSG00000049411	NonProperStrand	18	3	-5.5207
chr19	51792021	51792121	LINE	Lx3B	L1	chr19Lx3B51791796	ProperStrand	1	chr1	39368200	39370048	protein_coding	Npas2	intron	ENSMUSG00000026077	NonProperStrand	32	1	-inf
chr17	39847276	39847315	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	28070175	28070204	protein_coding	Paxip1	intron	ENSMUSG00000002221	ProperStrand	5	1	-4.3348
chr5	123633594	123633684	lincRNA	Gm17627	intron	ENSMUSG00000066418	ProperStrand	58	chr5	123632546	123632646	protein_coding	Hpd	utr5	ENSMUSG00000029445	ProperStrand	2	2	-inf
chr4	133966772	133966872	protein_coding-noncoding	Pafah2	utr5	ENSMUSG00000037366	NonProperStrand	1	chr4	133966887	133966977	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	1	-inf
chr10	56379465	56379516	SINE	B1_Mus2	Alu	chr10B1_Mus256379380	ProperStrand	2	chr10	56379516	56379557	Simple_repeat	(CAAAA)n	Simple_repeat	chr10(CAAAA)n56379516	ProperStrand	2	2	-inf
chr9	14932636	14932741	LINE	Lx6	L1	chr9Lx614932098	ProperStrand	2	chr9	14932803	14932933	Simple_repeat	(GGAGAA)n	Simple_repeat	chr9(GGAGAA)n14932733	ProperStrand	2	2	-inf
chr17	78919861	78919881	protein_coding	Vit	intron	ENSMUSG00000024076	NonProperStrand	35	chr15	98931909	98931984	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	1	-13.7874
chr2	69061217	69061286	protein_coding	G6pc2	intron	ENSMUSG00000005232	ProperStrand	5	chr6	37184268	37184326	protein_coding	Dgki	intron	ENSMUSG00000038665	ProperStrand	44	1	-17.8742
chr13	97190552	97190619	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr16	23110846	23110878	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-4.9972
chr17	39846816	39846835	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	121380446	121380570	protein_coding	4930432M17Rik	intron	ENSMUSG00000074248	ProperStrand	3	1	-4.3017
chr3	123839049	123839139	LTR	RLTR1B-int	ERV1	chr3RLTR1B-int123838317	NonProperStrand	1	chr3	123839371	123839471	LTR	RLTR1B	ERV1	chr3RLTR1B123839342	NonProperStrand	1	1	-inf
chr11	70009927	70009982	LTR	RLTR28	ERVL	chr11RLTR2870009794	ProperStrand	2	chr2	130276235	130276300	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	132	1	-17.9241
chr2	161042048	161042066	lincRNA	Gm14243	exon	ENSMUSG00000067745	ProperStrand	3	chr11	54920855	54924185	protein_coding	Gm2a	utr3	ENSMUSG00000000594	NonProperStrand	51	1	-18.9239
chr19	46558553	46558631	protein_coding	Sufu	intron	ENSMUSG00000025231	NonProperStrand	22	chr9	59665246	59665315	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-8.2984
chr2	181385788	181385873	protein_coding	Prpf6	exon	ENSMUSG00000002455	ProperStrand	86	chr7	99479563	99479599	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	2	-10.8263
chr18	17190073	17190122	lincRNA	1700001G01Rik	intron	ENSMUSG00000087170	NonProperStrand	8	chr5	107945423	107945511	protein_coding	1700028K03Rik	intron	ENSMUSG00000089798	NonProperStrand	21	1	-18.3864
chr1	9892445	9892535	protein_coding	Sgk3	utr3	ENSMUSG00000025915	ProperStrand	12	chr11	102319271	102319371	protein_coding	Itga2b	intron	ENSMUSG00000034664	NonProperStrand	17	1	-17.9393
chr6	3541017	3541067	protein_coding	Ccdc132	intron	ENSMUSG00000001376	ProperStrand	42	chr13	97190572	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8202
chr17	80852832	80852922	protein_coding	Sos1	intron	ENSMUSG00000024241	NonProperStrand	6	chr17	80929004	80929104	protein_coding	Cdkl4	intron	ENSMUSG00000033966	ProperStrand	5	1	-inf
chr7	12930795	12930842	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr12	84774600	84774713	SINE	B1F1	Alu	chr12B1F184774564	ProperStrand	1	1	-inf
chr10	40258543	40258612	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr1	92849982	92850049	protein_coding	Prlh	intron	ENSMUSG00000090550	ProperStrand	1	1	-inf
chr11	80104824	80104914	SINE	B1_Mur1	Alu	chr11B1_Mur180104810	ProperStrand	1	chr11	80104991	80105091	SINE	B3	B2	chr11B380104951	ProperStrand	1	1	-inf
chr1	75197664	75197764	protein_coding-noncoding	Glb1l	utr3	ENSMUSG00000026200	ProperStrand	5	chr1	75197770	75197860	protein_coding	Glb1l	exon	ENSMUSG00000026200	ProperStrand	9	5	-inf
chrX	101231420	101231520	LINE	Lx8	L1	chrXLx8101231258	ProperStrand	1	chrX	101231595	101231685	LTR	RLTR17	ERVK	chrXRLTR17101231527	ProperStrand	1	1	-inf
chr17	39847682	39847799	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	114806334	114806350	LTR	MLT1H	MaLR	chr9MLT1H114806294	NonProperStrand	2	1	-5.4040
chr2	22744878	22744920	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	117673982	117674064	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	89	1	-6.0297
chr11	3521752	3521789	SINE	B1_Mur4	Alu	chr11B1_Mur43521642	NonProperStrand	1	chr1	131574006	131574037	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-inf
chr8	121792386	121792440	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	chr15	83149697	83149799	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-6.9669
chr16	18334675	18334744	protein_coding	D16H22S680E	intron	ENSMUSG00000013539	ProperStrand	15	chr15	98738497	98738535	protein_coding	Lmbr1l	intron	ENSMUSG00000022999	ProperStrand	55	1	-15.0162
chr7	28977918	28977988	LINE	L1MD3	L1	chr7L1MD328977892	ProperStrand	3	chr17	39847296	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr11	94633267	94633285	LTR	RMER15	ERVL	chr11RMER1594632938	ProperStrand	2	chr17	39846433	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39846462	39846486	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	104635022	104635040	protein_coding	Cpne4	intron	ENSMUSG00000032564	ProperStrand	4	1	-3.6552
chr4	150241118	150242148	protein_coding	Errfi1	utr3	ENSMUSG00000028967	ProperStrand	111	chr8	70534485	70534563	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	1	-6.9583
chr3	138967622	138967722	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	61	chr3	137562427	137562517	protein_coding	Dnajb14	intron	ENSMUSG00000074212	NonProperStrand	1	1	-inf
chr7	102012164	102012215	LINE	L1Md_F2	L1	chr7L1Md_F2102012167	ProperStrand	2	chr7	102011968	102012009	LINE	Lx2B	L1	chr7Lx2B102011221	ProperStrand	2	2	-inf
chr17	39848485	39848575	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	105880035	105880134	processed_transcript	BC048594	.	ENSMUSG00000086131	NonProperStrand	7	1	-5.7189
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr16	17673255	17673281	protein_coding	Med15	exon	ENSMUSG00000012114	ProperStrand	39	1	-12.9968
chr13	114143843	114143936	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.1361
chr11	6181978	6181996	LTR	RLTR20A	ERVK	chr11RLTR20A6181876	ProperStrand	3	chr5	146260994	146261022	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-11.3685
chr17	39846881	39846903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	93586119	93586214	protein_coding-noncoding	Setd4	utr3	ENSMUSG00000022948	ProperStrand	4	1	-3.6552
chr17	39846718	39846782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	72539554	72539619	LTR	RMER10A	ERVL	chr8RMER10A72539406	NonProperStrand	1	1	-inf
chr15	35055269	35055318	protein_coding	Stk3	intron	ENSMUSG00000022329	ProperStrand	45	chr15	83149684	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-10.9157
chr18	73988117	73988150	LTR	MYSERV16_I-int	ERVK	chr18MYSERV16_I-int73987124	ProperStrand	1	chr9	40804662	40804989	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr1	127998717	127998817	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	chr9	70554624	70554714	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-8.4967
chr7	110059832	110059871	LINE	Lx5	L1	chr7Lx5110059319	NonProperStrand	5	chr9	40804747	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-12.5938
chrX	87238359	87238421	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr13	44869574	44869712	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	17	-20.8330
chr17	39846382	39846412	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	168312813	168312920	protein_coding-noncoding	Tada1	utr5	ENSMUSG00000026563	NonProperStrand	2	1	-5.3533
chr10	82994019	82994040	protein_coding	Aldh1l2	intron	ENSMUSG00000020256	NonProperStrand	34	chr8	83325279	83325321	protein_coding	Gab1	intron	ENSMUSG00000031714	ProperStrand	28	1	-14.7118
chr9	123461813	123461952	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr11	120491763	120491781	protein_coding	Mafg	intron	ENSMUSG00000051510	ProperStrand	2	1	-8.0983
chr10	81398778	81398798	LINE	Lx2B	L1	chr10Lx2B81398713	ProperStrand	1	chr2	157860147	157860270	protein_coding	Rprd1b	intron	ENSMUSG00000027651	ProperStrand	72	1	-inf
chr15	31592923	31592994	LINE	L1MB2	L1	chr15L1MB231592920	ProperStrand	3	chr17	39847673	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr7	68095928	68096018	LINE	L1Md_F3	L1	chr7L1Md_F368095303	ProperStrand	1	chr7	68096027	68096127	LINE	L1Md_F3	L1	chr7L1Md_F368096049	ProperStrand	3	1	-inf
chr17	29354316	29354343	protein_coding	Cpne5	intron	ENSMUSG00000024008	NonProperStrand	18	chr7	96498916	96498991	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	2	-17.8284
chr6	97054547	97054637	LTR	MTD	MaLR	chr6MTD97054479	NonProperStrand	2	chr6	97054361	97054461	SINE	B3A	B2	chr6B3A97054280	NonProperStrand	2	2	-inf
chr17	39846594	39846684	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	62613175	62613275	LTR	MTD	MaLR	chr4MTD62613145	NonProperStrand	1	1	-inf
chr2	61763887	61764868	LINE	L1MB7	L1	chr2L1MB761763172	NonProperStrand	2	chr2	61764874	61764916	LINE	L1_Mur3	L1	chr2L1_Mur361764811	NonProperStrand	4	1	-22.1285
chr17	39843823	39843891	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	131598204	131598222	protein_coding	Epb4.1	intron	ENSMUSG00000028906	ProperStrand	6	1	-7.5378
chr17	70963685	70963762	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr3	14648622	14648679	protein_coding	Car13	intron	ENSMUSG00000027555	ProperStrand	6	1	-10.9393
chr14	86771494	86771594	LINE	L1Md_F3	L1	chr14L1Md_F386771037	ProperStrand	1	chr14	86771715	86771805	LINE	L1Md_F3	L1	chr14L1Md_F386771571	NonProperStrand	2	1	-inf
chr17	39846428	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	146126183	146126272	protein_coding-noncoding	Zfp600	utr5	ENSMUSG00000066007	ProperStrand	3	1	-4.3017
chrX	151907067	151907419	LINE	Lx6	L1	chrXLx6151907176	ProperStrand	14	chrX	151906993	151907084	LTR	RMER16	ERVK	chrXRMER16151907009	NonProperStrand	9	9	-inf
chr11	97455823	97455923	LTR	RLTR12B	ERVK	chr11RLTR12B97455436	ProperStrand	2	chr17	39847133	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr16	69972716	69972816	LTR	MLT1C	MaLR	chr16MLT1C69972655	ProperStrand	1	chr16	69972538	69972628	LTR	RLTR31A_Mm	ERVK	chr16RLTR31A_Mm69972095	ProperStrand	1	1	-inf
chr17	4082258	4082358	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr5	11065053	11065143	LINE	L1Md_A	L1	chr5L1Md_A11064159	NonProperStrand	1	1	-inf
chr17	23548768	23548808	LINE	L1_Mur1	L1	chr17L1_Mur123547451	ProperStrand	4	chr17	39847659	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr9	17526795	17526885	LINE	L1MEg	L1	chr9L1MEg17526802	ProperStrand	1	chr9	17526623	17526724	SINE	B3	B2	chr9B317526558	ProperStrand	1	1	-inf
chr8	71545297	71545562	Other	RMER1C	Other	chr8RMER1C71545102	ProperStrand	2	chr9	123462021	123462090	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr19	10501802	10501844	protein_coding	Syt7	intron	ENSMUSG00000024743	NonProperStrand	9	chr9	65201725	65201776	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-14.9478
chr3	91808261	91808351	LTR	RLTR22_Mur	ERVK	chr3RLTR22_Mur91808118	ProperStrand	2	chr3	91808482	91808582	Simple_repeat	(GAA)n	Simple_repeat	chr3(GAA)n91808509	ProperStrand	2	2	-inf
chr9	38832461	38832490	LINE	Lx4B	L1	chr9Lx4B38832337	ProperStrand	2	chr6	3201066	3201267	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr7	84667581	84667706	LINE	L1Md_A	L1	chr7L1Md_A84665319	ProperStrand	1	chr17	39847244	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39848616	39848745	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr18	74948182	74948198	protein_coding	Acaa2	intron	ENSMUSG00000036880	NonProperStrand	7	1	-5.7189
chr12	54271812	54271845	LINE	L1Md_F2	L1	chr12L1Md_F254271172	NonProperStrand	1	chr7	66039001	66039024	protein_coding	Atp10a	intron	ENSMUSG00000025324	ProperStrand	84	1	-inf
chr6	30266122	30266228	lincRNA	1700095J07Rik	intron	ENSMUSG00000084861	NonProperStrand	16	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-11.5849
chr4	155245611	155245669	protein_coding	Cpsf3l	intron	ENSMUSG00000029034	NonProperStrand	4	chr4	155240413	155240499	protein_coding	Gltpd1	utr3	ENSMUSG00000029073	ProperStrand	1	1	-inf
chr2	67157833	67157878	antisense	Gm13599	.	ENSMUSG00000087043	NonProperStrand	7	chr6	54232352	54232435	protein_coding	Chn2	intron	ENSMUSG00000004633	ProperStrand	101	1	-15.4053
chr11	27181634	27181724	LTR	RLTR45-int	ERVK	chr11RLTR45-int27181333	NonProperStrand	1	chr11	27181238	27181338	LTR	RLTR9F	ERVK	chr11RLTR9F27180912	NonProperStrand	1	1	-inf
chr3	69340555	69340605	protein_coding	Ppm1l	intron	ENSMUSG00000027784	ProperStrand	31	chr3	158019419	158019459	protein_coding	Lrrc7	intron	ENSMUSG00000028176	ProperStrand	64	1	-13.2279
chr14	120852426	120852516	LINE	Lx9	L1	chr14Lx9120852327	NonProperStrand	1	chr14	120852630	120852730	LTR	RLTR47_MM	ERV1	chr14RLTR47_MM120852636	NonProperStrand	1	1	-inf
chr9	123461891	123461947	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	64698555	64698610	protein_coding	Prss55	intron	ENSMUSG00000034623	NonProperStrand	18	1	-3.2529
chr10	17723275	17723292	LTR	RLTR25A	ERVK	chr10RLTR25A17722785	ProperStrand	3	chr9	123462082	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr11	75689799	75689861	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	chr1	58404281	58404310	protein_coding	Aox3l1	intron	ENSMUSG00000079554	ProperStrand	31	1	-11.4260
chr3	158022025	158022945	protein_coding	Lrrc7	intron	ENSMUSG00000028176	ProperStrand	64	chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-9.8152
chr13	19107970	19108060	protein_coding	Amph	intron	ENSMUSG00000021314	ProperStrand	15	chr13	94894614	94894714	protein_coding	Lhfpl2	intron	ENSMUSG00000045312	ProperStrand	32	1	-16.1097
chr16	22393512	22393614	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr3	98137580	98138390	protein_coding	Phgdh	intron	ENSMUSG00000053398	NonProperStrand	7	1	-13.5103
chr17	35550856	35550945	LTR	MERVL_2A-int	ERVL	chr17MERVL_2A-int35548550	NonProperStrand	1	chr17	35551432	35551532	LTR	MERVL_2A-int	ERVL	chr17MERVL_2A-int35551043	NonProperStrand	1	1	-inf
chr8	91627900	91628000	LINE	L1_Mus1	L1	chr8L1_Mus191627113	NonProperStrand	5	chr13	44869576	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr7	80269833	80269849	SINE	PB1D10	Alu	chr7PB1D1080269791	ProperStrand	1	chr9	103338253	103338359	lincRNA	5830418P13Rik	intron	ENSMUSG00000086236	ProperStrand	54	1	-inf
chr2	135204615	135204632	antisense	9630028H03Rik	.	ENSMUSG00000085631	ProperStrand	8	chr17	33883296	33883377	protein_coding	Rab11b	utr3	ENSMUSG00000077450	ProperStrand	25	1	-18.0021
chr2	33859151	33859206	LTR	MT2A	ERVL	chr2MT2A33859065	NonProperStrand	1	chr2	33851331	33851376	LTR	RMER6A	ERVK	chr2RMER6A33850820	NonProperStrand	1	1	-inf
chr11	59218694	59218791	SINE	B1_Mus1	Alu	chr11B1_Mus159218639	ProperStrand	1	chr2	91473657	91473909	protein_coding	F2	intron	ENSMUSG00000027249	NonProperStrand	6	1	-inf
chr17	34952249	34952289	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr6	72806961	72807055	protein_coding	Kcmf1	intron	ENSMUSG00000055239	NonProperStrand	5	1	-15.8137
chr1	118905523	118905621	LTR	RMER13A	ERVK	chr1RMER13A118904799	ProperStrand	5	chr1	118904309	118904341	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n118904285	NonProperStrand	1	1	-inf
chr17	39843024	39843080	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr5	33359129	33359194	SINE	ID	ID	chr5ID33359144	NonProperStrand	1	1	-inf
chr12	110528334	110528434	LINE	L1Md_F2	L1	chr12L1Md_F2110528356	ProperStrand	1	chr12	110528240	110528330	LINE	L1_Mm	L1	chr12L1_Mm110526237	ProperStrand	11	1	-inf
chrX	130335866	130335924	LINE	L1Md_F2	L1	chrXL1Md_F2130335587	ProperStrand	1	chrX	130333828	130333909	LINE	L1Md_T	L1	chrXL1Md_T130332860	ProperStrand	3	1	-inf
chr5	136932955	136932995	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	113	chr2	4647072	4647187	protein_coding	Bend7	intron	ENSMUSG00000048186	NonProperStrand	4	1	-16.4884
chr10	77994182	77995294	LINE	L1_Mus1	L1	chr10L1_Mus177994833	NonProperStrand	17	chr10	78000835	78001371	Simple_repeat	(TAA)n	Simple_repeat	chr10(TAA)n78001326	NonProperStrand	8	1	-18.6132
chr1	43930191	43930218	SINE	B1_Mus2	Alu	chr1B1_Mus243930127	ProperStrand	1	chr10	94336756	94336773	protein_coding	Plxnc1	intron	ENSMUSG00000074785	NonProperStrand	3	1	-inf
chr18	37833345	37839977	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	ProperStrand	20	chr9	58876371	58876388	protein_coding	Neo1	intron	ENSMUSG00000032340	NonProperStrand	25	1	-16.0409
chr6	49236486	49236552	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr11	68188042	68188120	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	1	-6.5790
chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr13	23698084	23698154	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	ProperStrand	11	1	-7.8781
chr5	125404248	125404286	Low_complexity	AT_rich	Low_complexity	chr5AT_rich125404251	NonProperStrand	6	chr9	123462046	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr11	82432462	82432552	Low_complexity	C-rich	Low_complexity	chr11C-rich82432368	ProperStrand	1	chr11	82432559	82432659	SINE	B2_Mm2	B2	chr11B2_Mm282432573	ProperStrand	1	1	-inf
chr12	65061814	65061873	LINE	Lx5	L1	chr12Lx565061751	NonProperStrand	1	chr17	39847880	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	70963693	70963763	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chrX	93458976	93459012	protein_coding	Vsig4	intron	ENSMUSG00000044206	ProperStrand	22	1	-8.2163
chr5	33643544	33643656	lincRNA	Gm20465	intron	ENSMUSG00000092275	ProperStrand	22	chr1	89545236	89545254	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	18	1	-16.5243
chr17	39847958	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	102829327	102829356	LTR	ORR1C1-int	MaLR	chr2ORR1C1-int102828737	ProperStrand	3	1	-4.3512
chr1	36337391	36337481	LTR	ORR1D1	MaLR	chr1ORR1D136337398	NonProperStrand	6	chr1	36337216	36337316	SINE	B2_Mm2	B2	chr1B2_Mm236337205	NonProperStrand	6	6	-inf
chr7	97865557	97866104	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	chr12	80877603	80877644	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-7.4178
chr6	95550860	95550888	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.7523
chr4	118937975	118938075	SINE	B1_Mur2	Alu	chr4B1_Mur2118937991	ProperStrand	1	chr4	118937788	118937878	SINE	B1_Mur4	Alu	chr4B1_Mur4118937807	ProperStrand	1	1	-inf
chr17	39846759	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	15993021	15993051	SINE	B1_Mus2	Alu	chr7B1_Mus215992972	NonProperStrand	1	1	-inf
chr13	14499740	14499858	protein_coding	Hecw1	intron	ENSMUSG00000021301	ProperStrand	10	chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	1	-15.9248
chr16	35981617	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr6	50110378	50110434	protein_coding	Mpp6	intron	ENSMUSG00000038388	ProperStrand	34	1	-11.0327
chr1	71593186	71593211	LTR	MERVL_2A-int	ERVL	chr1MERVL_2A-int71592426	NonProperStrand	13	chr1	71595665	71595740	LTR	MT2A	ERVL	chr1MT2A71595495	NonProperStrand	4	1	-inf
chr5	36873022	36873070	protein_coding-noncoding	Tbc1d14	utr3	ENSMUSG00000029192	NonProperStrand	9	chr9	123462079	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr13	29974892	29974992	LTR	IAPEz-int	ERVK	chr13IAPEz-int29972855	ProperStrand	39	chr16	11143905	11143995	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	1	-9.9366
chr15	82276746	82276765	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n82276737	NonProperStrand	1	chr9	123462112	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	48589257	48589330	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	chr16	4715785	4715822	protein_coding	Nmral1	intron	ENSMUSG00000063445	ProperStrand	7	1	-18.3728
chr7	12224894	12224984	LINE	L1_Mus1	L1	chr7L1_Mus112224672	NonProperStrand	1	chr7	12225406	12225506	LINE	Lx	L1	chr7Lx12225371	NonProperStrand	1	1	-inf
chr19	7035543	7035572	protein_coding	Plcb3	intron	ENSMUSG00000024960	ProperStrand	22	chr2	32963315	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-10.9310
chr3	94872861	94872901	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	NonProperStrand	30	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.4878
chr13	97190562	97190607	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr18	3296553	3296588	protein_coding	Crem	intron	ENSMUSG00000063889	ProperStrand	26	1	-6.7743
chr5	146261301	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr7	75483494	75483594	lincRNA	Fam169b	intron	ENSMUSG00000074071	ProperStrand	17	1	-10.4302
chr9	121736569	121736629	antisense	Gm17163	.	ENSMUSG00000092042	ProperStrand	11	chr9	123462100	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr17	35834902	35834951	protein_coding	Ddr1	utr5	ENSMUSG00000003534	ProperStrand	232	chr1	131573834	131573873	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-6.2791
chr18	35557105	35557230	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chrX	56356114	56356132	protein_coding	Fgf13	intron	ENSMUSG00000031137	ProperStrand	21	1	-10.5370
chr17	39847026	39847128	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	107826395	107826432	SINE	B1F1	Alu	chr13B1F1107826288	NonProperStrand	1	1	-inf
chr17	39846580	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	18531622	18531699	protein_coding	5730507C01Rik	intron	ENSMUSG00000073197	ProperStrand	6	2	-5.1926
chr18	35572284	35572329	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr10	79819496	79819584	protein_coding	Plk5	intron	ENSMUSG00000035486	ProperStrand	17	1	-10.9705
chr3	90252862	90252983	SINE	B3	B2	chr3B390252851	ProperStrand	1	chr6	136582818	136582856	protein_coding	Plbd1	intron	ENSMUSG00000030214	NonProperStrand	39	1	-inf
chr18	21223622	21223707	LTR	ETnERV2-int	ERVK	chr18ETnERV2-int21222120	NonProperStrand	2	chr11	45325216	45325234	SINE	B4A	B4	chr11B4A45325034	ProperStrand	3	1	-20.8297
chr4	35118065	35118155	LTR	MLT2B2	ERVL	chr4MLT2B235117934	NonProperStrand	1	chr4	35117759	35117859	LTR	MTEb	MaLR	chr4MTEb35117744	NonProperStrand	1	1	-inf
chr12	109605154	109605201	LTR	RMER19B	ERVK	chr12RMER19B109604672	NonProperStrand	5	chr17	39847658	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr6	42272226	42272269	protein_coding	Fam131b	intron	ENSMUSG00000029861	NonProperStrand	7	chr17	30557843	30557939	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-11.6519
chrX	161864717	161864791	LINE	L1_Mus2	L1	chrXL1_Mus2161863182	ProperStrand	1	chr17	39846920	39847004	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	93325995	93326085	LINE	L1_Mur1	L1	chr7L1_Mur193325343	NonProperStrand	1	chr7	93326206	93326306	LINE	L1_Mur1	L1	chr7L1_Mur193326140	NonProperStrand	1	1	-inf
chr17	39843936	39844012	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr4	138158419	138158436	protein_coding	Vwa5b1	intron	ENSMUSG00000028753	ProperStrand	7	1	-8.3004
chr9	45563259	45563359	SINE	MIRc	MIR	chr9MIRc45563239	NonProperStrand	3	chr5	131935715	131935805	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	2	-inf
chr2	154949404	154949427	LTR	IAPEz-int	ERVK	chr2IAPEz-int154947176	ProperStrand	1	chr2	120535596	120535629	protein_coding	Stard9	intron	ENSMUSG00000033705	NonProperStrand	75	1	-inf
chr2	71796552	71796648	DNA	MER117	MER1_type	chr2MER11771796489	ProperStrand	1	chrX	153696119	153696137	protein_coding	Phex	intron	ENSMUSG00000057457	NonProperStrand	9	1	-inf
chr17	39847226	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	114563459	114563504	SINE	B2_Mm2	B2	chr9B2_Mm2114563434	ProperStrand	1	1	-inf
chrX	12801863	12801886	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr9	22450179	22450297	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	1	-10.6973
chr5	146261338	146261354	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261316	NonProperStrand	8	chr9	123461883	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr11	83495295	83495349	LINE	L1_Mus2	L1	chr11L1_Mus283495171	NonProperStrand	2	chrX	87238369	87238413	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	1	-16.9384
chr12	16988692	16988773	protein_coding	Rock2	intron	ENSMUSG00000020580	ProperStrand	46	chr4	53860707	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-9.9617
chr2	29732885	29733585	protein_coding	Cercam	intron	ENSMUSG00000039787	ProperStrand	31	chr19	28990467	28990546	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	59	1	-13.3934
chr7	141448750	141451069	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	188	chr7	141451007	141451236	LTR	MT2A	ERVL	chr7MT2A141450778	NonProperStrand	38	1	-10.6527
chr2	52739445	52739516	protein_coding	Fmnl2	intron	ENSMUSG00000036053	NonProperStrand	42	chr8	101986134	101986153	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-12.7773
chr16	84734485	84734519	protein_coding-noncoding	Mrpl39	utr3	ENSMUSG00000022889	ProperStrand	1	chr9	123461882	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	120129267	120130311	LTR	MTD	MaLR	chr9MTD120129944	NonProperStrand	34	chr9	120130778	120131047	LTR	ORR1E	MaLR	chr9ORR1E120130701	ProperStrand	44	5	-inf
chr7	135105420	135105520	LTR	MT2B	ERVL	chr7MT2B135105366	NonProperStrand	1	chr7	135105315	135105405	SINE	B1F2	Alu	chr7B1F2135105332	NonProperStrand	1	1	-inf
chr5	104852133	104852240	SINE	ID_B1	B4	chr5ID_B1104852063	ProperStrand	3	chr5	104852273	104852372	SINE	MIR	MIR	chr5MIR104852276	ProperStrand	3	3	-inf
chr6	3201499	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr1	63118544	63118668	protein_coding	Ino80d	intron	ENSMUSG00000040865	NonProperStrand	9	1	-6.5801
chr17	39846301	39846822	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	33754926	33755047	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	6	-4.5704
chr3	73016598	73016698	LTR	ORR1B1	MaLR	chr3ORR1B173016566	NonProperStrand	1	chr16	98063533	98063623	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	1	-inf
chr17	4082194	4082260	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr14	33967614	33967658	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-7.1903
chr7	79706407	79706497	LTR	ERVL-int	ERVL	chr7ERVL-int79706424	NonProperStrand	1	chr7	79706765	79706865	LTR	MLT1A	MaLR	chr7MLT1A79706648	NonProperStrand	1	1	-inf
chr4	81248770	81248870	LINE	Lx5	L1	chr4Lx581248376	NonProperStrand	1	chr4	81248895	81248985	LINE	Lx5	L1	chr4Lx581248904	NonProperStrand	1	1	-inf
chr10	58839385	58839485	LINE	L1M5	L1	chr10L1M558839368	ProperStrand	1	chr10	58839185	58839275	SINE	RSINE1	B4	chr10RSINE158839175	ProperStrand	1	1	-inf
chr8	90984280	90984337	LTR	ORR1A4-int	MaLR	chr8ORR1A4-int90983741	ProperStrand	1	chr8	90984393	90986142	LTR	ORR1A4	MaLR	chr8ORR1A490985875	ProperStrand	1	1	-inf
chr11	60797572	60797645	LTR	MTD	MaLR	chr11MTD60797286	ProperStrand	2	chr17	39846784	39846839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr8	31152812	31152838	LINE	L1_Mur3	L1	chr8L1_Mur331152788	ProperStrand	1	chr8	31153165	31153205	LINE	L1_Mur3	L1	chr8L1_Mur331153137	ProperStrand	1	1	-inf
chr3	122121794	122121884	LTR	MTD	MaLR	chr3MTD122121664	NonProperStrand	1	chr3	122121492	122121592	SINE	B1_Mus2	Alu	chr3B1_Mus2122121495	NonProperStrand	1	1	-inf
chr2	18474112	18474202	LINE	L1Md_T	L1	chr2L1Md_T18471739	NonProperStrand	1	chr17	39846745	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	130263811	130263861	protein_coding	Gbas	utr3	ENSMUSG00000029432	ProperStrand	48	chr5	130090567	130090627	protein_coding	Mmp17	intron	ENSMUSG00000029436	ProperStrand	18	1	-14.9234
chr11	115581793	115581972	SINE	B1_Mm	Alu	chr11B1_Mm115581760	ProperStrand	4	chr11	115581011	115581770	SINE	B2_Mm2	B2	chr11B2_Mm2115580972	ProperStrand	5	4	-inf
chr1	179300594	179300656	LTR	MTEb	MaLR	chr1MTEb179300581	NonProperStrand	3	chr9	123461878	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr17	23158563	23158663	LINE	L1Md_F2	L1	chr17L1Md_F223158041	NonProperStrand	1	chr14	33967482	33967572	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr5	87727611	87727711	LINE	Lx9	L1	chr5Lx987727327	NonProperStrand	1	chr5	87727732	87727822	LINE	Lx9	L1	chr5Lx987727734	NonProperStrand	1	1	-inf
chr17	33753192	33753250	LINE	L1Md_F2	L1	chr17L1Md_F233750791	NonProperStrand	18	chr9	40803994	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-9.8715
chr1	105632617	105632717	LTR	RLTR9E	ERVK	chr1RLTR9E105632441	NonProperStrand	1	chr9	78478748	78478838	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-inf
chr5	17776759	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	chr16	19883804	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-6.9980
chr10	62638424	62638466	protein_coding	Mypn	intron	ENSMUSG00000020067	ProperStrand	87	chr5	115489528	115489602	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-8.4110
chr9	123461977	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	73083447	73083530	protein_coding	Trpv3	intron	ENSMUSG00000043029	NonProperStrand	6	1	-5.4370
chr17	39847552	39847602	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	34201068	34201155	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int34200169	ProperStrand	1	1	-inf
chr1	171253944	171254060	LINE	L1_Mur3	L1	chr1L1_Mur3171253882	NonProperStrand	1	chr17	39847804	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	19474879	19474979	LINE	Lx7	L1	chr15Lx719474861	NonProperStrand	1	chr14	12964839	12964929	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	30	1	-inf
chr17	39842998	39843048	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr19	24170820	24170928	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	127	1	-3.9507
chr17	39846049	39846106	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	1	-3.6773
chr2	144422548	144422611	SINE	B1_Mus2	Alu	chr2B1_Mus2144422492	NonProperStrand	1	chr13	97190562	97190591	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr7	137094646	137094736	LINE	L1ME3	L1	chr7L1ME3137094580	ProperStrand	1	chr7	137094745	137094845	LINE	L1ME3	L1	chr7L1ME3137094741	ProperStrand	1	1	-inf
chr10	20237796	20237886	processed_transcript	4930403O15Rik	.	ENSMUSG00000068638	NonProperStrand	4	chr10	20237957	20238057	pseudogene	Gm17229	.	ENSMUSG00000092051	NonProperStrand	1	1	-inf
chr5	146261010	146261194	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	89473139	89475754	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	2	-3.3162
chr15	62098776	62098856	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr2	163730307	163730324	protein_coding	Rims4	intron	ENSMUSG00000035226	NonProperStrand	11	1	-9.6561
chr7	102415456	102421383	LINE	Lx2B	L1	chr7Lx2B102415354	NonProperStrand	8	chr7	102421379	102421479	LINE	Lx9	L1	chr7Lx9102421280	NonProperStrand	6	6	-inf
chr12	59040381	59040420	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr11	35952857	35952906	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-6.4094
chr4	117933881	117933935	protein_coding	Ptprf	intron	ENSMUSG00000033295	ProperStrand	98	chr9	72726953	72727017	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-7.6726
chr13	51128420	51128472	LTR	IAPEz-int	ERVK	chr13IAPEz-int51128367	ProperStrand	2	chr5	142903133	142903223	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-15.7371
chr17	39847891	39847913	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	25075413	25075467	protein_coding	Zfp61	intron	ENSMUSG00000050605	ProperStrand	4	1	-3.7035
chr7	80398787	80398831	LTR	ORR1C2	MaLR	chr7ORR1C280398656	NonProperStrand	3	chr11	69668962	69668996	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	3	-inf
chr4	21585433	21585533	LINE	L2c	L2	chr4L2c21585394	ProperStrand	3	chr1	85213602	85213692	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	NonProperStrand	16	3	-inf
chr9	123461882	123461972	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	46760807	46760907	protein_coding	Eif1a	intron	ENSMUSG00000057561	ProperStrand	4	1	-6.3300
chr8	80071635	80071725	LTR	MTE2a	MaLR	chr8MTE2a80071657	ProperStrand	1	chr8	80071332	80071432	LTR	ORR1A3	MaLR	chr8ORR1A380071106	ProperStrand	1	1	-inf
chr16	19307143	19307218	LTR	RLTR20B3	ERVK	chr16RLTR20B319307136	ProperStrand	1	chr17	39846462	39846495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	146111208	146111298	protein_coding	Dnase2b	intron	ENSMUSG00000028185	ProperStrand	2	chr3	146125984	146126084	protein_coding	Ctbs	intron	ENSMUSG00000028189	ProperStrand	2	1	-19.8939
chr14	19922499	19922561	LINE	L1_Mur2	L1	chr14L1_Mur219922409	NonProperStrand	3	chr14	19915045	19915103	Low_complexity	GA-rich	Low_complexity	chr14GA-rich19914980	NonProperStrand	1	1	-inf
chr3	135605138	135605157	SINE	RSINE1	B4	chr3RSINE1135605065	NonProperStrand	8	chr15	79146856	79146964	protein_coding	Pla2g6	intron	ENSMUSG00000042632	NonProperStrand	42	2	-inf
chr5	115490327	115490378	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr15	83149706	83149796	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-7.4780
chr12	79246021	79246060	LINE	L1MEc	L1	chr12L1MEc79245948	ProperStrand	1	chr17	39847277	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr10	95309181	95309231	LINE	L1MB3	L1	chr10L1MB395309147	NonProperStrand	2	chr4	104571403	104571471	LTR	LTR33A_	ERVL	chr4LTR33A_104571285	ProperStrand	1	1	-inf
chr17	36812606	36812623	LTR	RMER19B	ERVK	chr17RMER19B36812150	NonProperStrand	2	chr11	119206539	119206616	protein_coding	Sgsh	utr3	ENSMUSG00000005043	ProperStrand	18	1	-21.0482
chr7	63887356	63887435	LINE	Lx9	L1	chr7Lx963887316	ProperStrand	1	chr17	39847252	39847307	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	120421120	120421220	protein_coding-noncoding	Kcnq4	utr3	ENSMUSG00000028631	NonProperStrand	2	chr4	120421015	120421105	protein_coding	Kcnq4	intron	ENSMUSG00000028631	NonProperStrand	14	2	-inf
chr7	102129938	102129971	LTR	MTB	MaLR	chr7MTB102129712	NonProperStrand	3	chr2	5379278	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr12	36415630	36478654	LINE	Lx5	L1	chr12Lx536414380	ProperStrand	1	chr17	39847101	39847132	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	146261033	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	47263048	47263154	SINE	ID_B1	B4	chr17ID_B147263032	NonProperStrand	2	2	-inf
chr5	135393744	135393844	LTR	ORR1C2	MaLR	chr5ORR1C2135393573	ProperStrand	1	chr2	172349877	172349967	SINE	B3	B2	chr2B3172349777	ProperStrand	1	1	-inf
chr11	6528057	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr17	32158738	32158845	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	1	-11.9867
chr9	19657652	19657742	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chrX	97710106	97710206	protein_coding	Igbp1	intron	ENSMUSG00000031221	ProperStrand	1	1	-inf
chr9	17987801	17987831	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr2	157750729	157750851	protein_coding	Vstm2l	intron	ENSMUSG00000037843	ProperStrand	46	1	-11.6773
chr15	98950038	98950096	LINE	L1Md_T	L1	chr15L1Md_T98949581	NonProperStrand	3	chr8	106268845	106268893	LINE	L1Md_A	L1	chr8L1Md_A106268788	ProperStrand	1	1	-inf
chr2	127232978	127233084	LTR	ORR1D2	MaLR	chr2ORR1D2127233005	NonProperStrand	1	chr2	127232937	127232976	Simple_repeat	(TGGA)n	Simple_repeat	chr2(TGGA)n127232883	ProperStrand	2	1	-inf
chr11	95035718	95035809	DNA	RCHARR1	MER1_type	chr11RCHARR195035679	NonProperStrand	6	chr11	95035594	95035694	SINE	B3	B2	chr11B395035500	ProperStrand	6	6	-inf
chr5	34359244	34359288	protein_coding	Poln	intron	ENSMUSG00000045102	NonProperStrand	133	chrX	69223334	69223352	protein_coding	Fate1	intron	ENSMUSG00000053593	ProperStrand	1	1	-inf
chr1	179232852	179232942	Low_complexity	GA-rich	Low_complexity	chr1GA-rich179232815	NonProperStrand	4	chr1	179232737	179232839	SINE	B1_Mur4	Alu	chr1B1_Mur4179232677	NonProperStrand	3	3	-inf
chr11	23407393	23407483	LTR	MLT1F2	MaLR	chr11MLT1F223407258	ProperStrand	1	chr11	23407491	23407591	SINE	B1_Mus2	Alu	chr11B1_Mus223407487	ProperStrand	1	1	-inf
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr16	23110844	23110873	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-12.3011
chr18	69973669	69973759	LTR	MLT1C	MaLR	chr18MLT1C69973493	NonProperStrand	1	chr18	69973300	69973400	LTR	MTD	MaLR	chr18MTD69973121	NonProperStrand	1	1	-inf
chr14	63495779	63495806	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	chr5	100037815	100037861	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	119	1	-8.8789
chr19	3877002	3877040	protein_coding-noncoding	Chka	utr5	ENSMUSG00000024843	ProperStrand	20	chr13	44869586	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.6542
chr14	25699893	25699920	LINE	L1MD	L1	chr14L1MD25699812	NonProperStrand	9	chr17	39847072	39847089	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.1539
chr10	52622660	52622681	protein_coding	Slc35f1	intron	ENSMUSG00000038602	NonProperStrand	8	chr11	22929382	22929503	protein_coding	Fam161a	utr3	ENSMUSG00000049811	NonProperStrand	11	1	-20.8373
chr13	6592313	6592399	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr8	79667607	79668449	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	1	-9.0173
chr17	38482445	38482545	LINE	L1_Mur2	L1	chr17L1_Mur238482280	NonProperStrand	1	chr17	38482614	38482704	LTR	RLTR21	ERVK	chr17RLTR2138482638	NonProperStrand	1	1	-inf
chr8	64723833	64723857	LINE	L1Md_T	L1	chr8L1Md_T64723026	ProperStrand	17	chr19	46063669	46063765	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	NonProperStrand	78	1	-14.0563
chr19	40382645	40382697	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	chr2	90395133	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-6.9254
chr9	37500183	37500202	LTR	MLT1A1	MaLR	chr9MLT1A137500081	ProperStrand	3	chr18	34462187	34464272	protein_coding	Apc	intron	ENSMUSG00000005871	NonProperStrand	35	1	-19.1629
chr10	75662603	75662684	LINE	Lx6	L1	chr10Lx675662596	ProperStrand	2	chr10	75663009	75663081	SINE	B2_Mm2	B2	chr10B2_Mm275662994	ProperStrand	2	2	-inf
chr4	151344878	151352258	protein_coding-noncoding	Dnajc11	exon	ENSMUSG00000039768	NonProperStrand	4	chr4	151330200	151347077	protein_coding	Dnajc11	intron	ENSMUSG00000039768	NonProperStrand	27	4	-inf
chr13	44869583	44869683	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr14	14720874	14720964	protein_coding	Gm281	intron	ENSMUSG00000084902	NonProperStrand	42	1	-5.1817
chr6	3201509	3201537	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	4179185	4179365	lincRNA	Gm11959	intron	ENSMUSG00000085559	ProperStrand	18	1	-5.1708
chr11	5801149	5801214	protein_coding	Gck	utr3	ENSMUSG00000041798	NonProperStrand	11	chr9	81948345	81948431	protein_coding	Mei4	intron	ENSMUSG00000043289	ProperStrand	34	1	-16.6542
chr18	46354914	46354976	protein_coding	Trim36	intron	ENSMUSG00000033949	ProperStrand	5	chr14	14714388	14714458	protein_coding	Gm281	intron	ENSMUSG00000084902	NonProperStrand	42	1	-18.0379
chr11	120190743	120190833	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int120189815	NonProperStrand	2	chr11	120190895	120190995	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int120190809	NonProperStrand	2	2	-inf
chr8	122605390	122605480	protein_coding	Zdhhc7	utr3	ENSMUSG00000031823	ProperStrand	5	chr8	122604928	122605028	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-11.3494
chr9	47696770	47696860	SINE	B1_Mur4	Alu	chr9B1_Mur447696725	NonProperStrand	3	chr9	47696900	47697000	SINE	B3A	B2	chr9B3A47696904	NonProperStrand	3	3	-inf
chr6	108855522	108855601	LINE	Lx8	L1	chr6Lx8108855360	NonProperStrand	3	chr17	39847348	39847373	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr10	37789489	37789589	LINE	L1Md_F2	L1	chr10L1Md_F237787854	ProperStrand	2	chr10	37789610	37789700	LINE	L1_Mm	L1	chr10L1_Mm37789575	NonProperStrand	1	1	-inf
chr17	32207236	32207278	LTR	ORR1B1	MaLR	chr17ORR1B132207079	NonProperStrand	1	chr2	125724252	125724300	protein_coding	Galk2	intron	ENSMUSG00000027207	NonProperStrand	12	1	-inf
chr14	48259773	48259789	LTR	RLTR11A	ERVK	chr14RLTR11A48259445	ProperStrand	1	chr17	39847442	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	51142537	51142758	LINE	Lx3_Mus	L1	chr19Lx3_Mus51141674	ProperStrand	11	chr17	39847460	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-3.4077
chr13	9834305	9834436	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr9	123461802	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	17	-13.9666
chr1	161035856	161035911	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr7	84475016	84475100	LINE	L1Md_T	L1	chr7L1Md_T84473424	ProperStrand	1	1	-inf
chr2	25310080	25310108	SINE	B1_Mur3	Alu	chr2B1_Mur325310051	NonProperStrand	1	chr9	123461930	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	33967739	33967829	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	chr10	3400285	3400385	protein_coding	Ipcef1	intron	ENSMUSG00000064065	ProperStrand	9	1	-15.4533
chr4	53860712	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr6	88502478	88502549	protein_coding	Kbtbd12	intron	ENSMUSG00000033182	ProperStrand	28	1	-10.9664
chr10	12581834	12581924	protein_coding	Utrn	intron	ENSMUSG00000019820	NonProperStrand	15	chrX	71291839	71296165	protein_coding	Mecp2	intron	ENSMUSG00000031393	NonProperStrand	9	1	-18.7314
chr6	125364112	125364202	LTR	ORR1A4	MaLR	chr6ORR1A4125364054	NonProperStrand	1	chr6	125363884	125363984	SINE	B3	B2	chr6B3125363825	NonProperStrand	1	1	-inf
chr12	7158625	7158725	LINE	L1Md_F	L1	chr12L1Md_F7158473	NonProperStrand	1	chr12	7158397	7158487	LTR	RLTR6_Mm	ERV1	chr12RLTR6_Mm7158013	ProperStrand	1	1	-inf
chr11	93965856	93965910	protein_coding	Spag9	intron	ENSMUSG00000020859	NonProperStrand	74	chr1	153321874	153321918	protein_coding	Rnf2	intron	ENSMUSG00000026484	ProperStrand	71	1	-11.2618
chr1	42899540	42903375	LINE	L1_Mur3	L1	chr1L1_Mur342901422	NonProperStrand	10	chr1	42903371	42905411	LINE	L1_Mur3	L1	chr1L1_Mur342902328	NonProperStrand	8	5	-23.0413
chr17	39846932	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	29180459	29180507	protein_coding	Paf1	exon	ENSMUSG00000003437	NonProperStrand	2	1	-5.3533
chr15	82898683	82898783	SINE	B1_Mm	Alu	chr15B1_Mm82898620	NonProperStrand	5	chr15	82898781	82898871	SINE	B3	B2	chr15B382898798	NonProperStrand	4	4	-inf
chr10	80265412	80265498	protein_coding-noncoding	Sf3a2	utr5	ENSMUSG00000020211	ProperStrand	2	chr10	80272214	80272273	protein_coding	Jsrp1	intron	ENSMUSG00000020216	NonProperStrand	14	1	-19.5799
chr1	62806358	62806417	protein_coding	Nrp2	intron	ENSMUSG00000025969	ProperStrand	116	chr1	77419612	77419686	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	1	-7.9347
chr5	110722573	110722591	protein_coding	Pole	intron	ENSMUSG00000007080	ProperStrand	1	chr16	94672191	94672306	protein_coding	Ttc3	intron	ENSMUSG00000040785	ProperStrand	131	1	-inf
chr13	97190591	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr7	24888397	24888930	protein_coding	Zfp180	intron	ENSMUSG00000057101	ProperStrand	154	1	-3.3440
chr8	104439753	104439843	LTR	MLT1B-int	MaLR	chr8MLT1B-int104439281	ProperStrand	1	chr8	104439861	104439961	LTR	RMER20B	ERVK	chr8RMER20B104439861	NonProperStrand	1	1	-inf
chr9	78480050	78480255	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr5	74004860	74004903	protein_coding	Lrrc66	intron	ENSMUSG00000067206	ProperStrand	5	1	-12.6630
chr1	122357166	122357234	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr2	5379265	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	3	-5.0295
chr17	39843403	39843492	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	15382219	15382238	protein_coding	Ccdc67	intron	ENSMUSG00000039977	NonProperStrand	12	1	-5.6158
chr8	114779440	114779568	LINE	Lx7	L1	chr8Lx7114779280	NonProperStrand	2	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-14.0145
chr1	87856883	87856911	protein_coding	Gpr55	intron	ENSMUSG00000049608	NonProperStrand	4	chr16	32924282	32924371	pseudogene	Gm6611	.	ENSMUSG00000091997	ProperStrand	4	1	-inf
chr11	95864819	95864919	protein_coding	Igf2bp1	intron	ENSMUSG00000013415	ProperStrand	6	chr5	65668263	65668353	protein_coding	Rfc1	intron	ENSMUSG00000029191	ProperStrand	34	1	-18.0170
chr1	71586919	71590143	LTR	RLTR20B3	ERVK	chr1RLTR20B371589258	NonProperStrand	2	chr5	114851974	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-16.7741
chr17	39843736	39843761	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	69642397	69642516	protein_coding	Nlgn2	intron	ENSMUSG00000051790	NonProperStrand	22	1	-4.8672
chr5	71040798	71040898	LTR	IAPEz-int	ERVK	chr5IAPEz-int71039075	ProperStrand	1	chr5	71041151	71041241	LTR	IAPLTR2a	ERVK	chr5IAPLTR2a71040924	ProperStrand	1	1	-inf
chr17	39846462	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	21176258	21184532	protein_coding	Rnf138	intron	ENSMUSG00000024317	NonProperStrand	12	2	-3.1058
chr11	109011830	109011873	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	8165550	8165663	protein_coding	2410089E03Rik	intron	ENSMUSG00000039801	ProperStrand	47	1	-6.5828
chr17	4082162	4082274	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr6	12671763	12671875	protein_coding	Thsd7a	intron	ENSMUSG00000032625	NonProperStrand	12	2	-17.3428
chr16	80006211	80006301	LINE	L1Md_F3	L1	chr16L1Md_F380005273	ProperStrand	2	chr16	80006412	80006512	LINE	L1Md_F3	L1	chr16L1Md_F380006336	ProperStrand	2	2	-inf
chr7	30440000	30440170	LTR	MurERV4_19-int	ERVK	chr7MurERV4_19-int30439756	ProperStrand	7	chr6	125185766	125186129	protein_coding	Cd27	intron	ENSMUSG00000030336	ProperStrand	88	5	-21.3883
chr17	39847038	39847128	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	135234084	135234851	LTR	RLTR17	ERVK	chr3RLTR17135234592	ProperStrand	1	1	-inf
chr6	47965139	47965226	LTR	LTR73	ERV1	chr6LTR7347965099	NonProperStrand	1	chr12	15811639	15811658	protein_coding	Trib2	intron	ENSMUSG00000020601	NonProperStrand	2	1	-inf
chr7	136993670	136993792	SINE	B1_Mur1	Alu	chr7B1_Mur1136993702	NonProperStrand	2	chr8	127579217	127579236	protein_coding	Disc1	intron	ENSMUSG00000043051	ProperStrand	29	2	-inf
chr15	93921873	93921891	LINE	Lx7	L1	chr15Lx793921209	NonProperStrand	1	chr2	177073756	177073845	LINE	L1_Mus3	L1	chr2L1_Mus3177073108	ProperStrand	3	1	-inf
chr17	39846050	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	30822294	30822331	protein_coding	Phc3	intron	ENSMUSG00000037652	NonProperStrand	17	1	-4.2555
chr5	137300403	137302189	protein_coding	Emid2	intron	ENSMUSG00000004415	ProperStrand	82	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.3594
chr19	45756320	45756420	LTR	RMER15	ERVL	chr19RMER1545756306	ProperStrand	1	chr19	45756433	45756523	SINE	ID_B1	B4	chr19ID_B145756414	ProperStrand	1	1	-inf
chr17	39847206	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	4990560	4997338	protein_coding	Ewsr1	utr3	ENSMUSG00000009079	NonProperStrand	21	2	-3.1553
chr5	33528394	33528432	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm33527939	NonProperStrand	14	chr5	33527200	33527303	LTR	RLTR10	ERVK	chr5RLTR1033527106	NonProperStrand	14	1	-17.7319
chr8	122478753	122479177	protein_coding-noncoding	Usp10	utr5	ENSMUSG00000031826	ProperStrand	3	chr8	122478230	122479259	protein_coding	Usp10	intron	ENSMUSG00000031826	ProperStrand	9	2	-22.4834
chr2	144270404	144270548	LINE	Lx8	L1	chr2Lx8144270119	NonProperStrand	13	chr2	144270540	144270658	SINE	B3A	B2	chr2B3A144270536	NonProperStrand	4	4	-inf
chr15	69853747	69853809	LINE	Lx8	L1	chr15Lx869853732	NonProperStrand	1	chr9	123461812	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	47788786	47788886	LTR	MTEb	MaLR	chr10MTEb47788648	NonProperStrand	1	chr10	47789188	47789278	SINE	B1_Mur4	Alu	chr10B1_Mur447789204	ProperStrand	1	1	-inf
chr15	84765694	84766328	protein_coding	Nup50	exon	ENSMUSG00000016619	ProperStrand	22	chr9	19651766	19651801	protein_coding	Olfr860	intron	ENSMUSG00000066905	NonProperStrand	4	1	-21.7292
chr5	134592405	134592492	protein_coding	Gatsl2	intron	ENSMUSG00000015944	ProperStrand	38	chr2	121526884	121526928	pseudogene	Gm14021	.	ENSMUSG00000081264	NonProperStrand	1	1	-inf
chr2	71796038	71796107	SINE	B1_Mus1	Alu	chr2B1_Mus171796024	NonProperStrand	1	chr2	71795824	71795903	SINE	B4	B4	chr2B471795676	ProperStrand	2	1	-inf
chr15	53196892	53196924	DNA	MER5A	MER1_type	chr15MER5A53196863	NonProperStrand	1	chr14	24491755	24491912	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-inf
chr17	39846619	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	103304452	103304542	LTR	ORR1E	MaLR	chr9ORR1E103304368	NonProperStrand	1	1	-inf
chr3	14576704	14576721	LINE	Lx5	L1	chr3Lx514575408	ProperStrand	6	chr9	118674950	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.6975
chr17	39847275	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr13	6593926	6594015	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	NonProperStrand	2	1	-20.4235
chr17	39846102	39846144	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	27539805	27539857	protein_coding	Rxra	intron	ENSMUSG00000015846	NonProperStrand	11	1	-5.1180
chr4	147335190	147335295	SINE	MIR3	MIR	chr4MIR3147335143	ProperStrand	1	chr5	9449206	9449255	protein_coding	9330182L06Rik	intron	ENSMUSG00000056004	ProperStrand	8	1	-inf
chr6	31686708	31686749	lincRNA	Gm13847	intron	ENSMUSG00000086804	ProperStrand	1	chr16	18533190	18533273	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	1	-inf
chr10	60013684	60013770	protein_coding	Cdh23	intron	ENSMUSG00000012819	NonProperStrand	234	chr15	93267464	93267512	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	1	-9.4697
chr17	39847216	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	14946223	14946297	LTR	ORR1E-int	MaLR	chr17ORR1E-int14945863	ProperStrand	2	1	-6.5615
chr17	87571249	87571265	LINE	L4	RTE	chr17L487571131	ProperStrand	1	chr3	51233464	51233605	protein_coding	Naa15	intron	ENSMUSG00000063273	ProperStrand	43	1	-inf
chr10	11289551	11289616	LINE	L1MA9	L1	chr10L1MA911289416	NonProperStrand	1	chr17	39847234	39847279	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr6	64728491	64728581	LINE	L1Md_F2	L1	chr6L1Md_F264728364	ProperStrand	1	chr6	64728138	64728238	LTR	MTE-int	MaLR	chr6MTE-int64727787	ProperStrand	1	1	-inf
chr16	90128135	90128246	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr12	71170385	71170406	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	1	-6.1263
chr11	30824502	30824574	LINE	Lx2	L1	chr11Lx230824136	NonProperStrand	6	chr11	30825864	30825926	LTR	ORR1B1	MaLR	chr11ORR1B130825800	NonProperStrand	1	1	-inf
chr5	135407534	135407567	SINE	RSINE1	B4	chr5RSINE1135407529	NonProperStrand	1	chr5	135413739	135413782	protein_coding	Wbscr27	intron	ENSMUSG00000040557	NonProperStrand	4	1	-inf
chr10	115212187	115212264	LINE	Lx3C	L1	chr10Lx3C115212136	NonProperStrand	1	chr10	115212541	115212584	SINE	B4A	B4	chr10B4A115212519	ProperStrand	1	1	-inf
chr17	39848099	39848143	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	25265349	25265444	SINE	B3	B2	chr17B325265340	NonProperStrand	1	1	-inf
chr5	21375897	21375914	LINE	L1Md_F2	L1	chr5L1Md_F221375138	ProperStrand	2	chr17	39846353	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	109011651	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	110281284	110281370	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	7	-14.7575
chr17	39846208	39847884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	5295424	5625694	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	226	-8.1697
chr17	39847477	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	39592658	39596469	protein_coding-noncoding	Braf	utr3	ENSMUSG00000002413	NonProperStrand	5	1	-3.2379
chr9	57742405	57742426	LINE	Lx7	L1	chr9Lx757742231	ProperStrand	1	chr17	39847206	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr18	69511113	69511189	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	1	-6.1142
chr7	68099140	68099157	LINE	L1Md_A	L1	chr7L1Md_A68096398	ProperStrand	16	chr15	95938342	95938369	Simple_repeat	(GGA)n	Simple_repeat	chr15(GGA)n95938289	ProperStrand	1	1	-inf
chr11	116757696	116757744	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr1	72711789	72712220	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	61	1	-12.6151
chr2	10582672	10582741	LINE	Lx5	L1	chr2Lx510582043	NonProperStrand	1	chr4	137541420	137541485	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n137541139	ProperStrand	19	1	-inf
chrX	151874724	151876330	LINE	L1M5	L1	chrXL1M5151874295	NonProperStrand	3	chrX	151876374	151876858	LINE	Lx2B	L1	chrXLx2B151876346	ProperStrand	1	1	-inf
chr14	55545391	55547752	LINE	L2a	L2	chr14L2a55547519	ProperStrand	1	chr14	55547800	55548105	SINE	B3A	B2	chr14B3A55547985	ProperStrand	1	1	-inf
chr14	18236128	18236150	SINE	MIR	MIR	chr14MIR18236057	NonProperStrand	1	chr14	27660994	27661022	protein_coding	Dnahc12	intron	ENSMUSG00000021879	ProperStrand	39	1	-inf
chr17	35252169	35252259	protein_coding-noncoding	Ly6g5b	utr3	ENSMUSG00000043807	NonProperStrand	2	chr17	35252280	35252380	protein_coding	Ly6g5b	utr5	ENSMUSG00000043807	NonProperStrand	3	2	-inf
chr10	28148572	28148691	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	chr6	112771360	112771379	protein_coding	Srgap3	intron	ENSMUSG00000030257	NonProperStrand	8	1	-14.3136
chrX	38735787	38735804	LINE	L1MA6	L1	chrXL1MA638735719	ProperStrand	3	chr17	39846407	39846443	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr1	182474285	182474353	LTR	MTEa	MaLR	chr1MTEa182474291	NonProperStrand	1	chr13	44869947	44870025	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr6	43414444	43414508	protein_coding	Tpk1	intron	ENSMUSG00000029735	ProperStrand	82	chr16	16129766	16129859	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	2	-16.1111
chr11	45081834	45081924	SINE	B4A	B4	chr11B4A45081755	ProperStrand	1	chr11	45082063	45082163	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n45082068	ProperStrand	1	1	-inf
chr1	152019653	152019671	LINE	Lx4A	L1	chr1Lx4A152018773	NonProperStrand	2	chr17	39846588	39846669	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr2	60242665	60242765	LINE	Lx8	L1	chr2Lx860242534	NonProperStrand	1	chr10	82750375	82750755	protein_coding	Slc41a2	intron	ENSMUSG00000034591	ProperStrand	45	1	-inf
chrX	7982554	7982607	LINE	L1_Mm	L1	chrXL1_Mm7981384	NonProperStrand	1	chrX	7991219	7991301	protein_coding	Ssxb1	intron	ENSMUSG00000079705	ProperStrand	1	1	-inf
chr8	91638107	91638138	LINE	L1_Mur2	L1	chr8L1_Mur291637750	ProperStrand	7	chr8	91642515	91642581	LINE	L1_Mur2	L1	chr8L1_Mur291640254	ProperStrand	5	1	-22.8469
chr13	108328426	108328526	LTR	ORR1B1	MaLR	chr13ORR1B1108328431	ProperStrand	1	chr13	108328234	108328324	SINE	MIR	MIR	chr13MIR108328194	ProperStrand	1	1	-inf
chr16	68670093	68670193	LINE	L1Md_F3	L1	chr16L1Md_F368669511	ProperStrand	1	chr16	67143135	67143225	protein_coding	Cadm2	intron	ENSMUSG00000064115	ProperStrand	39	1	-inf
chr13	47069521	47069611	DNA	URR1A	MER1_type	chr13URR1A47069371	ProperStrand	1	chr13	47067449	47067549	LTR	ORR1E-int	MaLR	chr13ORR1E-int47067440	ProperStrand	1	1	-inf
chrX	37191061	37191138	LINE	L1_Mus1	L1	chrXL1_Mus137190443	ProperStrand	2	chr9	123461884	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr10	77497411	77503868	protein_coding-noncoding	Aire	utr3	ENSMUSG00000000731	ProperStrand	8	chr10	77490052	77514313	protein_coding	Aire	intron	ENSMUSG00000000731	ProperStrand	24	8	-inf
chr5	146261141	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	110002756	110002855	protein_coding	Dhx30	intron	ENSMUSG00000032480	NonProperStrand	23	1	-6.9599
chr10	62801579	62801656	protein_coding	Sirt1	exon	ENSMUSG00000020063	ProperStrand	228	chr17	29718610	29718651	protein_coding	Tbc1d22b	intron	ENSMUSG00000042203	ProperStrand	19	1	-11.6775
chr17	21045585	21045675	LINE	Lx3C	L1	chr17Lx3C21045219	ProperStrand	1	chr17	21045694	21045794	LTR	IAPEY3_LTR	ERVK	chr17IAPEY3_LTR21045696	NonProperStrand	1	1	-inf
chr7	107678545	107678613	SINE	B1_Mus1	Alu	chr7B1_Mus1107678465	ProperStrand	1	chr7	107637261	107637294	SINE	ID	ID	chr7ID107637217	NonProperStrand	1	1	-inf
chr17	39848124	39848159	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	56384143	56384251	LTR	MTD	MaLR	chr17MTD56383924	NonProperStrand	3	1	-7.3534
chr3	130425111	130425130	SINE	B2_Mm2	B2	chr3B2_Mm2130424987	NonProperStrand	1	chr10	67097921	67098009	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n67097946	ProperStrand	1	1	-inf
chr4	129720706	129720747	antisense	Gm12963	.	ENSMUSG00000085517	ProperStrand	22	chr7	6093499	6093517	protein_coding	Zfp787	intron	ENSMUSG00000046792	NonProperStrand	2	1	-21.2761
chr17	4082494	4082594	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr3	3250714	3250804	LINE	L1Md_A	L1	chr3L1Md_A3250015	NonProperStrand	1	1	-inf
chr4	13780538	13780597	protein_coding	Runx1t1	intron	ENSMUSG00000006586	ProperStrand	16	chr9	123461997	123462046	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr17	93367336	93367395	LINE	Lx3_Mus	L1	chr17Lx3_Mus93367347	NonProperStrand	1	chr17	93367253	93367337	SINE	B1_Mus1	Alu	chr17B1_Mus193367200	NonProperStrand	1	1	-inf
chr1	52901241	52901331	LINE	Lx	L1	chr1Lx52900603	NonProperStrand	1	chr1	52902862	52904670	protein_coding	Hibch	intron	ENSMUSG00000041426	ProperStrand	10	1	-inf
chr15	38015061	38018311	LTR	LTR16C	ERVL	chr15LTR16C38014953	ProperStrand	4	chr15	38018317	38018339	SINE	B1_Mus1	Alu	chr15B1_Mus138018226	NonProperStrand	1	1	-inf
chr17	39848182	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr12	19290569	19290667	SINE	B1_Mus2	Alu	chr12B1_Mus219290583	ProperStrand	1	1	-inf
chr3	37850011	37850040	LTR	ORR1E	MaLR	chr3ORR1E37849900	NonProperStrand	1	chr2	5379305	5379344	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	39845304	39845361	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr1	136861962	136862009	protein_coding	Ube2t	intron	ENSMUSG00000026429	NonProperStrand	24	1	-3.8866
chr17	6989218	6989318	SINE	B2_Mm2	B2	chr17B2_Mm26989235	NonProperStrand	3	chr17	8137470	8137560	antisense	D030054H15Rik	.	ENSMUSG00000090069	ProperStrand	4	3	-inf
chr5	114851974	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr13	44869574	44869682	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	4	-7.7509
chr14	75995437	75995537	LINE	L1Md_F2	L1	chr14L1Md_F275995172	NonProperStrand	2	chr14	75270069	75270159	protein_coding	Lrch1	intron	ENSMUSG00000068015	NonProperStrand	34	1	-19.8869
chr5	95925931	95926031	LINE	L1Md_A	L1	chr5L1Md_A95923519	ProperStrand	1	chr5	96203883	96203973	LINE	L1Md_F2	L1	chr5L1Md_F296203802	ProperStrand	1	1	-inf
chr9	17987803	17987832	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr2	90757470	90757538	protein_coding	Ptpmt1	intron	ENSMUSG00000063235	NonProperStrand	4	1	-16.8626
chr17	39847276	39847306	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	56562108	56562161	protein_coding	Gramd3	intron	ENSMUSG00000001700	NonProperStrand	7	1	-3.6430
chr2	150991263	150991316	LINE	L1Md_A	L1	chr2L1Md_A150985480	NonProperStrand	3	chr2	150984990	150985053	SINE	B3A	B2	chr2B3A150984879	ProperStrand	1	1	-inf
chr2	156967850	156967950	LINE	L2a	L2	chr2L2a156967498	ProperStrand	2	chr2	156967986	156968076	SINE	B2_Mm2	B2	chr2B2_Mm2156967950	NonProperStrand	2	2	-inf
chr18	80145993	80146077	LINE	Lx8	L1	chr18Lx880145430	NonProperStrand	1	chr16	4788109	4788176	protein_coding	5730403B10Rik	intron	ENSMUSG00000004071	ProperStrand	45	1	-inf
chr7	116237919	116237988	LINE	L2a	L2	chr7L2a116237810	NonProperStrand	7	chr11	88375797	88375824	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-10.6598
chr7	141443805	141443826	LINE	Lx6	L1	chr7Lx6141443452	ProperStrand	1	chr17	39847182	39847213	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr15	98950033	98950081	LINE	L1Md_T	L1	chr15L1Md_T98949581	NonProperStrand	3	chr4	48600447	48600521	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	114	1	-17.1478
chr1	96874768	96874858	LTR	ORR1D1	MaLR	chr1ORR1D196874497	ProperStrand	1	chr1	96874855	96874955	LTR	RLTR11A	ERVK	chr1RLTR11A96874866	NonProperStrand	1	1	-inf
chr11	12381919	12381981	LTR	ERVL-int	ERVL	chr11ERVL-int12381383	ProperStrand	2	chr17	39846429	39846481	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr9	122126895	122126935	protein_coding	Ano10	intron	ENSMUSG00000037949	NonProperStrand	24	chr10	63300519	63300637	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-11.5967
chr7	16502444	16502544	LTR	MTE2a	MaLR	chr7MTE2a16502437	NonProperStrand	2	chr7	16502550	16502640	protein_coding	Sepw1	utr3	ENSMUSG00000041571	ProperStrand	4	2	-inf
chr11	23025509	23025598	LINE	Lx	L1	chr11Lx23025493	NonProperStrand	1	chr11	23025825	23025873	LINE	Lx	L1	chr11Lx23025637	NonProperStrand	1	1	-inf
chr11	83357175	83357274	LINE	Lx8	L1	chr11Lx883357142	NonProperStrand	2	chr11	83357018	83357108	SINE	B3	B2	chr11B383356958	NonProperStrand	2	2	-inf
chr2	170133229	170133265	DNA	MER113A	MER1_type	chr2MER113A170133217	ProperStrand	1	chr2	170132971	170133002	SINE	B4A	B4	chr2B4A170132910	ProperStrand	1	1	-inf
chr10	80762566	80762606	protein_coding	Pip5k1c	intron	ENSMUSG00000034902	ProperStrand	107	chr8	72495667	72495764	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	1	-8.9326
chr1	92835819	92835919	protein_coding-noncoding	Mlph	utr5	ENSMUSG00000026303	ProperStrand	2	chr1	92835722	92835812	protein_coding	Mlph	intron	ENSMUSG00000026303	ProperStrand	33	2	-inf
chr8	70392576	70392605	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	chr13	100124911	100126634	protein_coding	Mrps27	intron	ENSMUSG00000041632	ProperStrand	10	1	-11.0622
chr2	132956292	132956382	LINE	L1M3	L1	chr2L1M3132956070	NonProperStrand	1	chr2	132955818	132955918	LINE	Lx7	L1	chr2Lx7132954340	NonProperStrand	1	1	-inf
chr5	103761469	103761559	LINE	Lx9	L1	chr5Lx9103761485	ProperStrand	2	chr5	103761558	103761658	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n103761571	ProperStrand	2	2	-inf
chr3	122466491	122466553	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	chr7	27814975	27815047	protein_coding	Cyp2a12	intron	ENSMUSG00000060407	ProperStrand	4	1	-15.1018
chr7	28491453	28491543	LTR	RLTR14	ERV1	chr7RLTR1428491309	NonProperStrand	1	chr7	28491299	28491399	protein_coding	C030039L03Rik	utr3	ENSMUSG00000057093	NonProperStrand	4	1	-inf
chr12	105852788	105852820	LTR	MLT1K	MaLR	chr12MLT1K105852565	ProperStrand	1	chr11	69668101	69668266	protein_coding	Tnk1	utr3	ENSMUSG00000001583	ProperStrand	269	1	-inf
chr15	47539994	47540112	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr4	150372736	150372773	protein_coding	Uts2	intron	ENSMUSG00000028963	ProperStrand	13	1	-13.2758
chr10	4135789	4135844	LINE	L1Md_T	L1	chr10L1Md_T4132275	ProperStrand	4	chr10	4119862	4119902	LTR	RLTR15	ERVK	chr10RLTR154119769	NonProperStrand	1	1	-inf
chr11	80132049	80132072	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	24	chr9	61913341	61913456	protein_coding	Glce	intron	ENSMUSG00000032252	ProperStrand	176	1	-11.7183
chr12	59040478	59040520	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr16	22406584	22406697	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	1	-7.1048
chr4	141126036	141126077	LINE	L2a	L2	chr4L2a141126012	ProperStrand	1	chr5	110105210	110105229	protein_coding	5430403G16Rik	exon	ENSMUSG00000072763	NonProperStrand	10	1	-inf
chr16	90772939	90773029	protein_coding-noncoding	Urb1	utr3	ENSMUSG00000039929	ProperStrand	1	chr16	90772458	90772558	protein_coding	Urb1	intron	ENSMUSG00000039929	ProperStrand	65	1	-inf
chr4	32724207	32724227	protein_coding	Casp8ap2	intron	ENSMUSG00000028282	ProperStrand	52	chr15	100211206	100211307	protein_coding	RP24-73K9.3	intron	ENSMUSG00000093789	ProperStrand	22	1	-14.3514
chr13	21907145	21907181	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr13	44869896	44869927	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.5559
chr16	35981617	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr8	70224637	70224730	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-5.3139
chr17	39847636	39847679	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	43881038	43881091	protein_coding-noncoding	Qtrtd1	utr3	ENSMUSG00000022704	ProperStrand	5	1	-3.2379
chr11	60014443	60014543	protein_coding-noncoding	Srebf1	utr3	ENSMUSG00000020538	ProperStrand	1	chr11	60014622	60014712	protein_coding	Srebf1	intron	ENSMUSG00000020538	ProperStrand	8	1	-inf
chrX	34571282	34571372	SINE	B1F	Alu	chrXB1F34571295	ProperStrand	1	chrX	34571721	34571821	SINE	RSINE1	B4	chrXRSINE134571728	NonProperStrand	1	1	-inf
chr6	29596641	29596704	LINE	L1M2	L1	chr6L1M229596539	ProperStrand	1	chr6	29589392	29589419	LTR	RMER17B	ERVK	chr6RMER17B29589098	ProperStrand	2	1	-inf
chr9	118982281	118982339	protein_coding	Plcd1	intron	ENSMUSG00000010660	NonProperStrand	3	chr11	121441691	121441707	protein_coding	Tbcd	intron	ENSMUSG00000039230	ProperStrand	16	1	-inf
chr15	51882804	51882824	LINE	Lx	L1	chr15Lx51882808	ProperStrand	3	chr17	39846523	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr6	3201426	3201459	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	79248833	79248940	protein_coding	Nf1	intron	ENSMUSG00000020716	NonProperStrand	33	1	-3.9945
chr10	128379576	128380653	protein_coding	Itga7	intron	ENSMUSG00000025348	ProperStrand	66	chr3	90062331	90062362	protein_coding	Crtc2	utr5	ENSMUSG00000027936	ProperStrand	14	1	-14.7874
chr17	39848121	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	24424438	24470510	protein_coding	Abca17	intron	ENSMUSG00000035435	NonProperStrand	73	3	-3.7849
chr1	177226195	177226224	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	chr18	53879681	53879784	protein_coding	Cep120	intron	ENSMUSG00000048799	NonProperStrand	33	1	-12.5303
chr14	118510824	118510902	lincRNA	Gm16847	intron	ENSMUSG00000085191	NonProperStrand	4	chr14	118512645	118512686	protein_coding	Tgds	intron	ENSMUSG00000022130	ProperStrand	13	1	-inf
chr9	57531770	57532313	LTR	MTEa	MaLR	chr9MTEa57531865	NonProperStrand	1	chr13	97190557	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr11	115585134	115585215	SINE	ID_B1	B4	chr11ID_B1115585009	NonProperStrand	1	chr19	6415233	6415280	processed_transcript	Gm14965	.	ENSMUSG00000084876	NonProperStrand	1	1	-inf
chr12	85026470	85026570	SINE	B2_Mm2	B2	chr12B2_Mm285026496	NonProperStrand	1	chr12	85026171	85026261	SINE	ID_B1	B4	chr12ID_B185026164	NonProperStrand	1	1	-inf
chr17	39846842	39846926	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	59949200	59952988	LTR	ORR1A4	MaLR	chr1ORR1A459952708	NonProperStrand	4	1	-3.6552
chr11	3126994	3129856	protein_coding	Eif4enif1	intron	ENSMUSG00000020454	ProperStrand	62	chr17	3077946	3082471	pseudogene	Pisd-ps2	.	ENSMUSG00000023795	ProperStrand	15	10	-22.4096
chr17	39846433	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	122098405	122098436	protein_coding	Hsdl1	intron	ENSMUSG00000034189	NonProperStrand	1	1	-inf
chr16	5195884	5195913	protein_coding	Nagpa	utr3	ENSMUSG00000023143	ProperStrand	4	chr4	43532010	43532244	protein_coding	Tpm2	intron	ENSMUSG00000028464	ProperStrand	8	2	-inf
chr1	4837289	4837344	protein_coding	Lypla1	intron	ENSMUSG00000025903	ProperStrand	29	chr13	97190582	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.5556
chr11	49222232	49222259	Other	RMER1B	Other	chr11RMER1B49221869	NonProperStrand	1	chrX	162803682	162803736	protein_coding	Gpm6b	intron	ENSMUSG00000031342	NonProperStrand	61	1	-inf
chr10	117785114	117787826	LINE	MusHAL1	L1	chr10MusHAL1117786971	ProperStrand	1	chr9	123461930	123461999	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	7705523	7705613	protein_coding-noncoding	Wdr13	utr3	ENSMUSG00000031166	NonProperStrand	3	chrX	7705695	7705795	protein_coding	Wdr13	intron	ENSMUSG00000031166	NonProperStrand	6	2	-inf
chr13	97190561	97190609	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr8	61131350	61131431	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	2	-5.0102
chr17	4082114	4082261	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	22002025	22002165	LINE	L1Md_A	L1	chr2L1Md_A22000000	NonProperStrand	2	2	-inf
chr9	123461933	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	35093918	35093966	protein_coding	Grk4	intron	ENSMUSG00000052783	NonProperStrand	11	1	-4.1956
chrX	61878289	61878379	LINE	L1VL4	L1	chrXL1VL461877943	NonProperStrand	1	chrX	61842552	61842652	LINE	L1_Mur3	L1	chrXL1_Mur361842566	ProperStrand	1	1	-inf
chr3	142604316	142606823	LTR	MTB_Mm	MaLR	chr3MTB_Mm142606740	NonProperStrand	1	chr3	142607161	142607251	LTR	RMER4B	ERVK	chr3RMER4B142607153	NonProperStrand	1	1	-inf
chr9	56416365	56416409	LINE	Lx8	L1	chr9Lx856416348	NonProperStrand	1	chr9	56416818	56416878	SINE	B4A	B4	chr9B4A56416747	NonProperStrand	1	1	-inf
chr12	36109748	36109838	LINE	L1VL2	L1	chr12L1VL236109275	NonProperStrand	2	chr12	36107566	36109728	LINE	L1_Mus1	L1	chr12L1_Mus136107514	ProperStrand	9	1	-inf
chr10	21043059	21043119	protein_coding	Hbs1l	intron	ENSMUSG00000019977	ProperStrand	12	chr13	42155288	42155358	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	54	1	-15.5281
chr1	21735527	21735544	protein_coding	Kcnq5	intron	ENSMUSG00000028033	NonProperStrand	11	chr8	106648393	106648496	protein_coding	Cdh5	intron	ENSMUSG00000031871	ProperStrand	143	1	-13.7474
chr12	65171033	65171123	LINE	Lx4B	L1	chr12Lx4B65169982	ProperStrand	1	chr5	65562041	65562141	LINE	L1MB5	L1	chr5L1MB565561384	ProperStrand	6	1	-inf
chr17	39846889	39846942	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	122868126	122868208	LTR	RLTR1D	ERV1	chr5RLTR1D122868044	NonProperStrand	3	1	-4.3017
chr17	39846759	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	128239819	128239900	protein_coding	Tmem198b	intron	ENSMUSG00000047090	NonProperStrand	2	1	-5.3533
chr10	23785753	23785822	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr9	50521852	50521878	protein_coding	Dixdc1	intron	ENSMUSG00000032064	ProperStrand	17	1	-12.6163
chr12	57423419	57423519	LINE	Lx5	L1	chr12Lx557423445	NonProperStrand	1	chr12	57423330	57423420	LTR	RMER15-int	ERVL	chr12RMER15-int57422504	ProperStrand	1	1	-inf
chr2	59999573	59999706	protein_coding	Baz2b	intron	ENSMUSG00000026987	ProperStrand	70	chr1	101840020	101840041	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	ProperStrand	27	1	-13.3292
chr5	139169588	139169667	LTR	ORR1B1	MaLR	chr5ORR1B1139169319	ProperStrand	1	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	13309810	13309915	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	chr15	57975972	57975997	protein_coding	Wdyhv1	intron	ENSMUSG00000022359	NonProperStrand	10	1	-13.8118
chr19	5089550	5089791	protein_coding	Yif1a	exon	ENSMUSG00000024875	ProperStrand	1	chr11	23284250	23284340	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-inf
chr6	115081613	115081713	lincRNA	Gm17733	intron	ENSMUSG00000091748	NonProperStrand	3	chr6	118644853	118644943	protein_coding	Cacna1c	intron	ENSMUSG00000051331	NonProperStrand	17	1	-19.8425
chr5	77289591	77289612	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	chr5	77305107	77305138	protein_coding	Aasdh	exon	ENSMUSG00000055923	ProperStrand	15	1	-12.5938
chr7	133732417	133732507	protein_coding	Apobr	utr3	ENSMUSG00000042759	ProperStrand	1	chr7	133732545	133732645	protein_coding	Il27	utr3	ENSMUSG00000044701	NonProperStrand	1	1	-inf
chr17	39846718	39846762	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	95070654	95070733	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n95070587	NonProperStrand	2	1	-5.3533
chr7	126878922	126879193	LTR	MuRRS4-int	ERV1	chr7MuRRS4-int126877032	NonProperStrand	1	chr10	40412898	40412919	protein_coding	9030224M15Rik	intron	ENSMUSG00000045555	ProperStrand	68	1	-inf
chr19	47102715	47102746	SINE	PB1D10	Alu	chr19PB1D1047102682	ProperStrand	3	chr1	43821829	43821915	protein_coding	Uxs1	intron	ENSMUSG00000057363	ProperStrand	20	1	-23.6265
chr17	39845705	39845835	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr13	103819917	103819936	protein_coding	Mast4	intron	ENSMUSG00000034751	NonProperStrand	16	1	-4.6708
chr14	54035365	54035455	LINE	L1Md_F2	L1	chr14L1Md_F254034974	ProperStrand	1	chr14	54034755	54034855	LTR	RLTR10	ERVK	chr14RLTR1054034527	NonProperStrand	1	1	-inf
chr18	41882835	41882910	LINE	Lx9	L1	chr18Lx941882741	ProperStrand	1	chrX	75216908	75216952	LTR	RMER15-int	ERVL	chrXRMER15-int75216840	NonProperStrand	1	1	-inf
chr17	39846486	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	55329057	55329129	protein_coding	Etfa	intron	ENSMUSG00000032314	NonProperStrand	4	1	-3.6552
chr5	91788288	91788388	protein_coding	Btc	utr3	ENSMUSG00000082361	ProperStrand	1	chr5	91788430	91788520	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-inf
chr5	121877140	121879885	protein_coding-noncoding	Erp29	utr3	ENSMUSG00000029616	ProperStrand	2	chr5	121877003	121877103	protein_coding	Naa25	intron	ENSMUSG00000042719	NonProperStrand	4	2	-inf
chr2	66947562	66947652	LINE	L1Md_T	L1	chr2L1Md_T66947578	NonProperStrand	1	chr2	66249129	66249229	protein_coding	Scn1a	intron	ENSMUSG00000064329	ProperStrand	19	1	-inf
chr1	179864943	179864981	LINE	L1Md_T	L1	chr1L1Md_T179859477	ProperStrand	1	chr11	75592212	75598245	protein_coding	Doc2b	intron	ENSMUSG00000020848	NonProperStrand	28	1	-inf
chr15	48047479	48047569	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr14	121596241	121596341	protein_coding	Farp1	intron	ENSMUSG00000025555	ProperStrand	10	1	-13.8235
chr12	40729711	40729774	LINE	L1Md_F2	L1	chr12L1Md_F240729414	NonProperStrand	2	chr4	45396138	45397942	LTR	MMETn-int	ERVK	chr4MMETn-int45396022	ProperStrand	5	1	-inf
chr10	78042122	78042204	protein_coding	Ilvbl	intron	ENSMUSG00000032763	NonProperStrand	41	chr13	97190552	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8678
chr13	44717006	44717107	LTR	MTC	MaLR	chr13MTC44716803	ProperStrand	1	chr2	91695219	91695309	protein_coding	Ambra1	intron	ENSMUSG00000040506	NonProperStrand	61	1	-inf
chr18	67310820	67310881	protein_coding	Gnal	intron	ENSMUSG00000024524	ProperStrand	146	chr4	149120030	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.8340
chr1	164207119	164207861	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	chr16	14139398	14139527	protein_coding	4921513D23Rik	intron	ENSMUSG00000060657	ProperStrand	75	2	-17.4642
chr3	120415145	120415236	LINE	L1Md_F2	L1	chr3L1Md_F2120414696	ProperStrand	1	chr3	120415791	120415891	LINE	Lx6	L1	chr3Lx6120415641	ProperStrand	1	1	-inf
chr15	81816660	81816750	LTR	RLTR11A2	ERVK	chr15RLTR11A281816470	ProperStrand	1	chr15	81815804	81815904	LTR	RLTR19-int	ERVK	chr15RLTR19-int81815652	ProperStrand	2	1	-inf
chr2	104988997	104989058	protein_coding	Wt1	intron	ENSMUSG00000016458	NonProperStrand	6	chr18	25371660	25371738	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	1	-17.2691
chr13	97190599	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-5.1549
chr6	3201473	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	87950279	87950353	protein_coding	4921524J17Rik	intron	ENSMUSG00000036934	ProperStrand	22	1	-4.7755
chr10	31766242	31766342	DNA	Charlie1a	MER1_type	chr10Charlie1a31766246	ProperStrand	1	chr10	31766776	31766866	Simple_repeat	(TATG)n	Simple_repeat	chr10(TATG)n31766777	NonProperStrand	1	1	-inf
chr16	5772176	5772266	SINE	B3A	B2	chr16B3A5772038	ProperStrand	1	chr16	5772695	5772795	SINE	MIRb	MIR	chr16MIRb5772666	NonProperStrand	1	1	-inf
chr11	101462453	101462486	Simple_repeat	(CATG)n	Simple_repeat	chr11(CATG)n101462355	NonProperStrand	2	chr10	79859178	79859353	protein_coding	Mbd3	intron	ENSMUSG00000035478	NonProperStrand	98	1	-18.5502
chr3	90058566	90058756	protein_coding	Crtc2	intron	ENSMUSG00000027936	ProperStrand	14	chr3	90056534	90058526	protein_coding	Slc39a1	utr3	ENSMUSG00000052310	ProperStrand	8	2	-19.7117
chr4	109751711	109751795	LINE	L1Md_T	L1	chr4L1Md_T109751443	ProperStrand	1	chr17	31636729	31636755	protein_coding-noncoding	Wdr4	utr3	ENSMUSG00000024037	ProperStrand	1	1	-inf
chr10	53500486	53500502	LINE	L1Md_F2	L1	chr10L1Md_F253500323	NonProperStrand	1	chr13	97190580	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr9	44856755	44856799	protein_coding	Mpzl2	intron	ENSMUSG00000032092	NonProperStrand	5	chr11	87085908	87085942	protein_coding	Ppm1e	intron	ENSMUSG00000046442	ProperStrand	15	1	-20.1811
chr8	116646489	116646560	DNA	URR1A	MER1_type	chr8URR1A116646392	ProperStrand	1	chr9	123462008	123462089	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	12212347	12212406	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chrX	134586525	134587460	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-7.8976
chr8	47453397	47453497	LTR	RMER6A	ERVK	chr8RMER6A47453144	NonProperStrand	1	chr14	79862116	79862206	protein_coding	Wbp4	intron	ENSMUSG00000022023	ProperStrand	22	1	-inf
chr14	18270378	18270421	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	56	chr11	106991976	106992029	protein_coding	Bptf	intron	ENSMUSG00000040481	ProperStrand	25	1	-13.9371
chr5	33532447	33532521	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr5	33529214	33529299	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int33529161	NonProperStrand	15	2	-20.5411
chr8	114795382	114795423	SINE	ID4	ID	chr8ID4114795388	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr13	42721051	42721080	LINE	Lx8	L1	chr13Lx842720533	ProperStrand	1	chr17	39847206	39847245	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	99280626	99280676	LINE	L1Md_T	L1	chr12L1Md_T99280051	NonProperStrand	7	chr17	39847242	39847324	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr18	64940587	64940668	LTR	ORR1C1	MaLR	chr18ORR1C164940509	NonProperStrand	4	chr18	64935590	64935654	LTR	RMER15	ERVL	chr18RMER1564935585	NonProperStrand	3	2	-inf
chr1	135508738	135508838	lincRNA	Gm17713	intron	ENSMUSG00000092104	NonProperStrand	21	chr2	14714254	14714343	protein_coding	Cacnb2	intron	ENSMUSG00000057914	ProperStrand	15	1	-16.9358
chr4	135231274	135231341	LTR	BGLII_A	ERVK	chr4BGLII_A135230941	NonProperStrand	1	chr12	78350925	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chrX	107194722	107194743	LTR	IAP-d-int	ERVK	chrXIAP-d-int107190111	ProperStrand	1	chr12	78350926	78351011	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr2	128123624	128123640	lincRNA	Gm14005	intron	ENSMUSG00000074813	NonProperStrand	116	chr12	80870076	80870189	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-8.5210
chr17	12989664	12989764	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	chr4	116552765	116552855	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	2	-16.8552
chr13	114202220	114202331	LTR	ORR1A3	MaLR	chr13ORR1A3114202170	ProperStrand	1	chr9	123461991	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847902	39848020	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	31170179	31170214	Unknown	CYRA11_Mm	Y-chromosome	chr5CYRA11_Mm31170106	ProperStrand	1	1	-inf
chr7	4143424	4143471	LINE	L1Md_T	L1	chr7L1Md_T4137819	NonProperStrand	40	chr7	4145293	4145386	LTR	IAPEz-int	ERVK	chr7IAPEz-int4144938	NonProperStrand	67	1	-12.6194
chr16	17541085	17541185	LTR	MERVL_2A-int	ERVL	chr16MERVL_2A-int17540683	NonProperStrand	1	chr16	17541384	17541474	LTR	MERVL_2A-int	ERVL	chr16MERVL_2A-int17541287	NonProperStrand	1	1	-inf
chr4	117558338	117558555	antisense	Gm12841	.	ENSMUSG00000085278	ProperStrand	6	chr4	117558642	117559625	protein_coding-noncoding	Atp6v0b	utr3	ENSMUSG00000033379	NonProperStrand	8	2	-inf
chr7	28783985	28784071	LINE	L1Md_F2	L1	chr7L1Md_F228778998	ProperStrand	2	chr7	28784358	28784407	LINE	L1Md_F2	L1	chr7L1Md_F228784150	ProperStrand	1	1	-inf
chr5	125329261	125329388	protein_coding	Ccdc92	intron	ENSMUSG00000037979	ProperStrand	54	chr5	118000930	118000955	protein_coding	Ksr2	intron	ENSMUSG00000061578	ProperStrand	81	1	-11.6312
chr16	23111299	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr9	63377133	63377183	protein_coding	Iqch	intron	ENSMUSG00000037801	ProperStrand	108	1	-8.7320
chr10	84535785	84535803	LTR	ORR1B1	MaLR	chr10ORR1B184535697	ProperStrand	1	chr1	188984719	188984831	protein_coding	Spata17	intron	ENSMUSG00000026611	ProperStrand	80	1	-inf
chr13	96650207	96650290	protein_coding	Iqgap2	intron	ENSMUSG00000021676	ProperStrand	82	chr5	30671114	30671176	protein_coding	Otof	intron	ENSMUSG00000062372	NonProperStrand	98	1	-10.4085
chr7	37980462	37980562	SINE	B3A	B2	chr7B3A37980400	NonProperStrand	4	chr7	37980578	37980668	Simple_repeat	(GGA)n	Simple_repeat	chr7(GGA)n37980590	NonProperStrand	3	3	-inf
chr6	4949012	4949102	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	chr4	126167029	126167524	protein_coding	Eif2c4	utr3	ENSMUSG00000042500	ProperStrand	92	1	-8.2447
chr17	39846847	39846899	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	46184082	46184144	SINE	B3	B2	chr9B346184063	ProperStrand	1	1	-inf
chr4	150540216	150540243	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-8.0015
chr2	22744826	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr13	44869575	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	14	-18.2731
chr13	29967353	29967453	LINE	L1_Mus4	L1	chr13L1_Mus429967042	ProperStrand	15	chr13	29965652	29965742	Simple_repeat	(TC)n	Simple_repeat	chr13(TC)n29965644	NonProperStrand	3	3	-inf
chr8	18833054	18833144	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int18832370	ProperStrand	1	chr19	5851406	5851506	protein_coding	Frmd8	utr3	ENSMUSG00000024816	ProperStrand	39	1	-inf
chr17	35384420	35384520	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	chr8	13417167	13417257	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	1	-16.2851
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	125673529	125673597	protein_coding	Cops2	intron	ENSMUSG00000027206	NonProperStrand	5	1	-6.1691
chr9	82890806	82890840	LINE	L1MEc	L1	chr9L1MEc82890664	ProperStrand	1	chr11	69562778	69562850	protein_coding	Polr2a	intron	ENSMUSG00000005198	ProperStrand	12	1	-inf
chr17	39847326	39847392	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	21937017	21945748	protein_coding	Tmem41a	intron	ENSMUSG00000022856	ProperStrand	3	2	-9.8423
chr1	36093130	36093190	LTR	MERVL-int	ERVL	chr1MERVL-int36088814	ProperStrand	54	chr16	55974680	55974731	protein_coding	Rpl24	intron	ENSMUSG00000022601	ProperStrand	72	2	-18.7577
chr3	12313451	12313551	LINE	L1Md_F2	L1	chr3L1Md_F212313250	NonProperStrand	1	chrX	156795938	156796028	LTR	ORR1A2	MaLR	chrXORR1A2156795794	ProperStrand	1	1	-inf
chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	chr10	43323471	43323576	protein_coding	F930017D23Rik	intron	ENSMUSG00000075184	ProperStrand	41	1	-12.8606
chr6	64870801	64870833	LINE	L1Md_F2	L1	chr6L1Md_F264869785	ProperStrand	1	chr7	98179409	98182213	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-inf
chr5	53010343	53010443	Low_complexity	G-rich	Low_complexity	chr5G-rich53010343	ProperStrand	1	chr5	53010101	53010191	protein_coding	8030423F21Rik	utr5	ENSMUSG00000052295	NonProperStrand	2	1	-inf
chr7	63915086	63915176	Other	RMER1B	Other	chr7RMER1B63914988	ProperStrand	4	chr17	56033168	56033268	protein_coding	Zfp959	intron	ENSMUSG00000003198	NonProperStrand	6	1	-inf
chr11	97753810	97753850	lincRNA	Gm11630	intron	ENSMUSG00000086917	NonProperStrand	6	chr10	20161902	20161957	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	1	-13.4823
chr6	3201474	3201532	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	62202118	62202216	protein_coding	Ncor1	intron	ENSMUSG00000018501	NonProperStrand	20	1	-4.9626
chr17	39848598	39848708	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	38138059	38138097	LTR	RLTR25B	ERVK	chr5RLTR25B38137984	ProperStrand	2	1	-8.7208
chr5	3882356	3882446	LINE	L1MA4	L1	chr5L1MA43882253	NonProperStrand	1	chr5	3882119	3882219	SINE	B1_Mur1	Alu	chr5B1_Mur13882108	ProperStrand	1	1	-inf
chr15	77771832	77771854	protein_coding	Foxred2	utr3	ENSMUSG00000016552	ProperStrand	71	chr13	97190562	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.7968
chr3	41600687	41600736	LINE	L1Md_F2	L1	chr3L1Md_F241599914	ProperStrand	8	chr9	123461905	123462014	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr4	133045836	133045940	LTR	LTR33	ERVL	chr4LTR33133045829	ProperStrand	1	1	-inf
chr5	31074622	31074666	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr13	44845679	44845713	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-6.5656
chr2	150749083	150749153	protein_coding	Gins1	intron	ENSMUSG00000027454	ProperStrand	4	chr13	44869934	44870014	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-16.4206
chr1	122357177	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr2	92340418	92340494	lincRNA	Gm13814	intron	ENSMUSG00000085261	ProperStrand	42	1	-9.6261
chr6	7676279	7677234	LTR	MMERGLN-int	ERV1	chr6MMERGLN-int7669533	NonProperStrand	9	chr6	7677283	7677942	LTR	RLTR1B	ERV1	chr6RLTR1B7677060	NonProperStrand	5	1	-inf
chr14	99944048	99944148	LINE	Lx2B	L1	chr14Lx2B99943907	ProperStrand	2	chr14	99944212	99944302	SINE	B2_Mm1t	B2	chr14B2_Mm1t99944220	ProperStrand	2	2	-inf
chr13	14053524	14053585	protein_coding	B3galnt2	intron	ENSMUSG00000039242	ProperStrand	34	chr5	114707316	114707404	protein_coding	Foxn4	intron	ENSMUSG00000042002	ProperStrand	2	1	-19.6592
chr2	172385982	172386053	SINE	B3A	B2	chr2B3A172385941	NonProperStrand	1	chr12	73986921	73987002	protein_coding	4930447C04Rik	intron	ENSMUSG00000021098	NonProperStrand	6	1	-inf
chr13	53232715	53232770	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	chr11	77457837	77457860	pseudogene	Gm12733	.	ENSMUSG00000081543	NonProperStrand	1	1	-inf
chr17	39843491	39843554	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	144477534	144477587	protein_coding	Clca2	intron	ENSMUSG00000028262	ProperStrand	26	1	-4.0922
chr1	136324824	136324924	protein_coding	Adipor1	intron	ENSMUSG00000026457	NonProperStrand	20	chr1	136284594	136284684	protein_coding	4933406M09Rik	intron	ENSMUSG00000050526	NonProperStrand	3	3	-inf
chrX	61652159	61652249	LINE	Lx	L1	chrXLx61651360	NonProperStrand	1	chrX	61652345	61652445	LTR	RLTR13D2	ERVK	chrXRLTR13D261652349	ProperStrand	1	1	-inf
chr12	67667930	67668020	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	chr11	51210903	51211003	protein_coding	Col23a1	intron	ENSMUSG00000063564	NonProperStrand	66	3	-20.1319
chr4	149120032	149120048	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	104209384	104212856	protein_coding	Acpp	intron	ENSMUSG00000032561	ProperStrand	41	1	-7.3290
chrX	87238364	87238392	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr2	174098574	174098592	SINE	B1_Mus2	Alu	chr2B1_Mus2174098514	NonProperStrand	1	1	-inf
chr17	39843503	39843535	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr1	54557437	54557475	protein_coding	Pgap1	intron	ENSMUSG00000070889	ProperStrand	9	1	-6.2068
chr9	31070731	31070821	LTR	RMER15	ERVL	chr9RMER1531070491	NonProperStrand	2	chr15	99076650	99076750	protein_coding	Mcrs1	intron	ENSMUSG00000037570	NonProperStrand	10	1	-20.4467
chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr5	145179838	145179932	protein_coding	Bri3	intron	ENSMUSG00000047843	ProperStrand	118	1	-3.8339
chr17	63499712	63499729	protein_coding	Fbxl17	intron	ENSMUSG00000023965	NonProperStrand	24	chr8	84476513	84476622	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-8.3525
chr2	166592224	166592324	SINE	B1_Mus2	Alu	chr2B1_Mus2166592186	NonProperStrand	10	chr2	166592344	166592880	SINE	B3A	B2	chr2B3A166592781	NonProperStrand	10	10	-inf
chr11	11828098	11828168	LTR	MTD	MaLR	chr11MTD11827860	NonProperStrand	1	chr18	36430443	36430520	SINE	B1_Mur1	Alu	chr18B1_Mur136430368	NonProperStrand	1	1	-inf
chr19	5796923	5796971	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr5	115545720	115545779	protein_coding-noncoding	Sppl3	utr5	ENSMUSG00000029550	ProperStrand	6	1	-9.1125
chr13	23555147	23555505	protein_coding	Btn1a1	intron	ENSMUSG00000000706	NonProperStrand	212	chr13	23555426	23555480	tRNA	tRNA105-GluTTC	.	161940	ProperStrand	3	3	-inf
chr15	53181391	53181491	LINE	L1MA8	L1	chr15L1MA853181324	NonProperStrand	1	chr15	53181503	53181593	SINE	ID_B1	B4	chr15ID_B153181477	NonProperStrand	1	1	-inf
chr5	136039714	136039804	LTR	MTEb	MaLR	chr5MTEb136039648	ProperStrand	2	chr5	136039297	136039398	protein_coding	Ccl26	intron	ENSMUSG00000070464	ProperStrand	2	2	-inf
chr3	107662937	107663027	DNA	Tigger7	MER2_type	chr3Tigger7107662612	ProperStrand	1	chr3	107663072	107663172	SINE	ID4_	ID	chr3ID4_107663071	ProperStrand	1	1	-inf
chr11	101289367	101289441	protein_coding	Rundc1	intron	ENSMUSG00000035007	NonProperStrand	9	chr8	8681896	8681952	protein_coding	Arglu1	intron	ENSMUSG00000040459	ProperStrand	44	1	-16.5665
chr4	101354892	101354917	LTR	ORR1D2	MaLR	chr4ORR1D2101354792	NonProperStrand	1	chr7	12930803	12930840	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	1	-inf
chr5	23844093	23844119	protein_coding	Kcnh2	intron	ENSMUSG00000038319	ProperStrand	11	chr13	114003792	114003828	protein_coding	Esm1	intron	ENSMUSG00000042379	ProperStrand	92	1	-14.6318
chr12	86506448	86514308	SINE	B2_Mm2	B2	chr12B2_Mm286506415	ProperStrand	1	chr12	86514294	86514394	protein_coding	Pgf	intron	ENSMUSG00000004791	NonProperStrand	195	1	-inf
chr11	109011656	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	25699846	25699911	LINE	L1MD	L1	chr14L1MD25699812	NonProperStrand	9	1	-9.9559
chr17	39842997	39843064	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr4	131873908	131873965	protein_coding	Trnau1ap	intron	ENSMUSG00000028898	NonProperStrand	42	1	-6.0870
chr1	195315587	195315677	LTR	RLTR28	ERVL	chr1RLTR28195315428	ProperStrand	1	chr1	195315964	195316064	SINE	B1_Mus1	Alu	chr1B1_Mus1195315937	ProperStrand	1	1	-inf
chr8	84844382	84844482	LINE	L1Md_F2	L1	chr8L1Md_F284844012	NonProperStrand	5	chr8	84844481	84844572	LINE	L1Md_F2	L1	chr8L1Md_F284844462	NonProperStrand	9	4	-inf
chr17	39846817	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	171328385	171328441	Simple_repeat	(TTC)n	Simple_repeat	chr1(TTC)n171328326	NonProperStrand	1	1	-inf
chr11	87378950	87379041	SINE	B3A	B2	chr11B3A87378924	NonProperStrand	2	chr11	87378845	87378945	SINE	PB1D10	Alu	chr11PB1D1087378814	NonProperStrand	2	2	-inf
chr2	38896864	38896947	protein_coding	Golga1	intron	ENSMUSG00000026754	ProperStrand	15	chr4	83295206	83295279	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-12.5835
chr6	29588083	29589064	LINE	Lx	L1	chr6Lx29588903	ProperStrand	1	chr6	29589106	29589197	LTR	RMER17B	ERVK	chr6RMER17B29589098	ProperStrand	2	1	-inf
chr14	47320266	47320296	LINE	L2c	L2	chr14L2c47320101	ProperStrand	1	chr6	3201470	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr17	39846450	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	41918233	41918334	SINE	B4A	B4	chr19B4A41918257	ProperStrand	3	1	-4.3017
chr9	59678987	59679065	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr18	88868961	88869032	protein_coding	Socs6	intron	ENSMUSG00000056153	ProperStrand	33	1	-7.4794
chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr13	44869952	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.1199
chr13	97190545	97190573	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr16	30308259	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-5.1881
chr1	143680286	143680362	LINE	Lx6	L1	chr1Lx6143680109	NonProperStrand	2	chr17	39846647	39846713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr17	39847160	39847380	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	71631280	71657834	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	9	-3.3616
chr3	39118423	39118439	LINE	L1Md_T	L1	chr3L1Md_T39117553	ProperStrand	2	chr17	39846586	39846680	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr7	80464926	80466796	lincRNA	A730056A06Rik	intron	ENSMUSG00000092033	ProperStrand	89	chr17	25100277	25100382	protein_coding	Cramp1l	utr3	ENSMUSG00000038002	ProperStrand	64	1	-11.0999
chr10	127030768	127030803	protein_coding	Lrp1	intron	ENSMUSG00000040249	ProperStrand	36	chr13	36206039	36206106	protein_coding	Lyrm4	intron	ENSMUSG00000046573	NonProperStrand	50	1	-13.4241
chr4	117202577	117202643	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr4	134271053	134271109	SINE	B3	B2	chr4B3134271041	ProperStrand	1	1	-inf
chr17	39845360	39845440	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	24591040	24591110	protein_coding	E4f1	intron	ENSMUSG00000024137	NonProperStrand	5	1	-7.0883
chr13	9834332	9834482	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr17	70963685	70963796	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	2	-5.8297
chr7	17034188	17034272	LINE	L1Md_F3	L1	chr7L1Md_F317034170	NonProperStrand	1	chr18	63078741	63078757	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	1	-inf
chr8	83715264	83715317	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int83714337	ProperStrand	6	chr8	25215041	25215141	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-13.9590
chr16	87756607	87756658	DNA	URR1A	MER1_type	chr16URR1A87756602	ProperStrand	2	chr16	87760497	87760579	Other	RMER1B	Other	chr16RMER1B87760432	NonProperStrand	2	2	-inf
chr16	65558400	65558470	protein_coding	Chmp2b	intron	ENSMUSG00000004843	ProperStrand	11	chr9	123461959	123462019	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr7	68117482	68117533	LINE	Lx9	L1	chr7Lx968117481	ProperStrand	2	chr17	39846809	39846881	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr12	4290378	4290451	protein_coding	Ncoa1	intron	ENSMUSG00000020647	ProperStrand	80	chr10	62181812	62181853	protein_coding	Stox1	intron	ENSMUSG00000036923	ProperStrand	3	1	-17.9075
chr4	3805015	3805115	SINE	B3	B2	chr4B33804977	ProperStrand	1	chr4	3805228	3805318	SINE	RSINE1	B4	chr4RSINE13805217	ProperStrand	1	1	-inf
chr4	41009599	41009689	SINE	ID_B1	B4	chr4ID_B141009599	NonProperStrand	2	chr4	41009773	41009873	SINE	ID_B1	B4	chr4ID_B141009748	NonProperStrand	2	2	-inf
chr9	110281289	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr9	104230919	104231032	protein_coding	Acpp	intron	ENSMUSG00000032561	ProperStrand	41	1	-8.3256
chr14	75847917	75848017	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr4	132309975	132310065	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	2	-17.4516
chr17	39846453	39847040	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	102778319	102778336	lincRNA	Gm17536	intron	ENSMUSG00000091056	ProperStrand	10	2	-3.6091
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chrX	136271712	136271728	protein_coding	Tbc1d8b	intron	ENSMUSG00000042473	NonProperStrand	10	1	-14.2639
chr9	80399490	80399521	LTR	RMER5	ERV1	chr9RMER580399385	NonProperStrand	6	chr9	123461907	123462025	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr9	77519261	77519351	LTR	ORR1C2	MaLR	chr9ORR1C277519264	ProperStrand	2	chr9	77519128	77519228	LTR	ORR1D2	MaLR	chr9ORR1D277518886	ProperStrand	2	2	-inf
chr11	12298626	12298704	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr12	101892518	101892576	protein_coding	Rps6ka5	exon	ENSMUSG00000021180	ProperStrand	99	1	-8.0452
chr11	109011729	109011762	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	73284914	73284941	protein_coding	Wipf1	intron	ENSMUSG00000075284	ProperStrand	9	1	-9.9559
chr17	34240674	34240774	LINE	L1_Mur3	L1	chr17L1_Mur334239883	ProperStrand	1	chr17	34241011	34241101	LTR	MTA_Mm	MaLR	chr17MTA_Mm34241034	NonProperStrand	1	1	-inf
chr14	112588262	112588352	LINE	Lx5	L1	chr14Lx5112587881	NonProperStrand	1	chr14	112588528	112588628	LINE	Lx6	L1	chr14Lx6112588332	ProperStrand	1	1	-inf
chr9	49032411	49032511	SINE	B3	B2	chr9B349032399	ProperStrand	2	chr9	49032234	49032324	SINE	MIRb	MIR	chr9MIRb49032246	NonProperStrand	1	1	-inf
chr11	51793758	51793888	lincRNA	Gm16953	intron	ENSMUSG00000087101	NonProperStrand	36	chr14	63058023	63058047	protein_coding	Gucy1b2	intron	ENSMUSG00000021933	NonProperStrand	2	1	-20.3707
chr6	5277762	5277862	LTR	IAPEz-int	ERVK	chr6IAPEz-int5277646	NonProperStrand	1	chr6	5277482	5277572	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm5277301	NonProperStrand	1	1	-inf
chr3	95008144	95008191	protein_coding-noncoding	Gabpb2	utr3	ENSMUSG00000038766	ProperStrand	5	chr3	95007787	95007844	protein_coding	Gabpb2	exon	ENSMUSG00000038766	ProperStrand	36	1	-18.3288
chr11	115580562	115580759	SINE	B2_Mm1a	B2	chr11B2_Mm1a115580647	ProperStrand	4	chr9	123461959	123462004	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr5	144101366	144101456	LTR	MTD	MaLR	chr5MTD144101328	ProperStrand	1	chr5	144122811	144122911	protein_coding	Grid2ip	intron	ENSMUSG00000010825	ProperStrand	61	1	-inf
chr6	125145747	125145856	LINE	Lx5	L1	chr6Lx5125145611	ProperStrand	1	chr9	123461848	123461873	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	110432600	110432727	LINE	L1Md_F2	L1	chr11L1Md_F2110432065	ProperStrand	2	chr4	62470754	62470771	LINE	L1MA8	L1	chr4L1MA862470628	ProperStrand	4	1	-22.1285
chr13	109490563	109490619	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr12	67663603	67663673	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-7.4062
chr6	33955319	33955388	LINE	Lx	L1	chr6Lx33954725	NonProperStrand	1	chr12	78350925	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr4	155074527	155074627	SINE	B1_Mur1	Alu	chr4B1_Mur1155074504	NonProperStrand	3	chr4	155074625	155074715	SINE	B2_Mm2	B2	chr4B2_Mm2155074633	NonProperStrand	3	3	-inf
chr17	32307472	32307500	SINE	RSINE1	B4	chr17RSINE132307450	ProperStrand	1	chr2	5379240	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr18	56839220	56839240	LTR	MT2A	ERVL	chr18MT2A56838892	NonProperStrand	1	chr18	56839630	56839660	SINE	B1_Mm	Alu	chr18B1_Mm56839612	NonProperStrand	1	1	-inf
chr6	49258374	49258465	LTR	MT2A	ERVL	chr6MT2A49258357	NonProperStrand	3	chr6	49258237	49258337	SINE	B1_Mus2	Alu	chr6B1_Mus249258232	ProperStrand	2	1	-20.2824
chr8	78603147	78603230	LTR	RLTR16	ERVK	chr8RLTR1678602771	NonProperStrand	2	chr19	5799989	5800010	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-11.8135
chr7	113247935	113248015	LINE	L1Md_A	L1	chr7L1Md_A113247671	NonProperStrand	1	chr7	113210172	113210225	processed_transcript	RP23-466I14.1	.	ENSMUSG00000093378	ProperStrand	23	1	-inf
chr15	59652561	59652661	DNA	URR1A	MER1_type	chr15URR1A59652577	NonProperStrand	2	chr15	59652432	59652522	LINE	Lx3_Mus	L1	chr15Lx3_Mus59652158	ProperStrand	2	2	-inf
chr6	49236498	49236557	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr16	56035834	56035888	protein_coding	Rg9mtd1	intron	ENSMUSG00000044763	ProperStrand	14	1	-12.2897
chr18	42525530	42525630	SINE	B1_Mur4	Alu	chr18B1_Mur442525483	ProperStrand	1	chr18	42525419	42525509	SINE	B1_Mus1	Alu	chr18B1_Mus142525390	ProperStrand	1	1	-inf
chr11	17221334	17221365	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr13	8989070	8990700	protein_coding	Gtpbp4	intron	ENSMUSG00000021149	ProperStrand	25	1	-15.0144
chr15	53268711	53268801	LINE	L1_Mur3	L1	chr15L1_Mur353268494	ProperStrand	13	chr17	39848253	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-4.1930
chr11	59393677	59393796	LINE	L1MEf	L1	chr11L1MEf59392881	NonProperStrand	1	chr17	39848462	39848499	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chr3	97161693	97161791	LINE	Lx7	L1	chr3Lx797160967	NonProperStrand	7	chr17	39847174	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr2	150281868	150281958	LINE	Lx3C	L1	chr2Lx3C150281709	NonProperStrand	2	chr2	150281953	150282053	LTR	RLTR19-int	ERVK	chr2RLTR19-int150281980	ProperStrand	1	1	-inf
chr3	90099566	90099636	SINE	B1_Mus2	Alu	chr3B1_Mus290099471	NonProperStrand	1	chr19	57834295	57834372	protein_coding	Atrnl1	intron	ENSMUSG00000054843	ProperStrand	65	1	-inf
chr9	78367077	78367177	SINE	B1_Mus2	Alu	chr9B1_Mus278367013	NonProperStrand	13	chr9	78367178	78367268	SINE	B2_Mm1t	B2	chr9B2_Mm1t78367196	NonProperStrand	39	6	-inf
chr9	15316546	15316636	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	chr1	59859236	59863807	protein_coding	Bmpr2	intron	ENSMUSG00000067336	ProperStrand	65	1	-10.2937
chr10	128490473	128490503	LINE	L1Md_F3	L1	chr10L1Md_F3128488776	NonProperStrand	3	chr14	19278161	19278200	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-17.9278
chr1	89624353	89624456	LINE	L1MEf	L1	chr1L1MEf89624243	ProperStrand	1	chr9	123462018	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	17903146	17903177	LTR	MTA_Mm	MaLR	chr12MTA_Mm17903043	ProperStrand	1	chr2	5379270	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr14	67912258	67912296	protein_coding	Ebf2	intron	ENSMUSG00000022053	NonProperStrand	40	chr2	71845408	71845512	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-11.1537
chrX	151085444	151085531	LINE	L1_Mur3	L1	chrXL1_Mur3151085412	ProperStrand	1	chr12	113061729	113061850	protein_coding	Zfyve21	intron	ENSMUSG00000021286	NonProperStrand	1	1	-inf
chr2	6437669	6437782	LINE	L1VL2	L1	chr2L1VL26437028	ProperStrand	2	chr6	3201468	3201514	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr10	121925820	121925896	Simple_repeat	(TATG)n	Simple_repeat	chr10(TATG)n121925793	NonProperStrand	1	chr10	86347607	86347654	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	81	1	-inf
chr2	151600580	151600680	LINE	L2a	L2	chr2L2a151600439	ProperStrand	3	chr2	151600705	151600795	LINE	Lx8	L1	chr2Lx8151600677	NonProperStrand	3	3	-inf
chr13	9834352	9834441	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr2	79292500	79292522	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-8.8865
chr11	6137285	6137341	LTR	MERVL_2A-int	ERVL	chr11MERVL_2A-int6136898	NonProperStrand	5	chr17	39847164	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr3	32349569	32349600	protein_coding	Pik3ca	intron	ENSMUSG00000027665	NonProperStrand	80	chr12	81437135	81437221	protein_coding	Dcaf5	utr3	ENSMUSG00000049106	ProperStrand	69	1	-11.1627
chr14	69695596	69695660	LINE	L1_Mus3	L1	chr14L1_Mus369695464	ProperStrand	2	chr17	39847804	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr2	29432889	29432945	LTR	RLTR26	ERVK	chr2RLTR2629432846	ProperStrand	1	chr14	74922752	74922805	SINE	B4	B4	chr14B474922705	ProperStrand	1	1	-inf
chr4	103563333	103563419	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	107	chr6	37873117	37873183	protein_coding	Trim24	intron	ENSMUSG00000029833	ProperStrand	33	1	-12.0681
chr11	75405239	75405275	protein_coding	Pitpna	intron	ENSMUSG00000017781	ProperStrand	1	chr11	70979929	70980002	protein_coding	Nlrp1b	intron	ENSMUSG00000070390	ProperStrand	51	1	-inf
chr1	103731436	103731526	LTR	MER74A	ERVL	chr1MER74A103731457	ProperStrand	1	chr1	103731808	103731908	LTR	RMER17D	ERVK	chr1RMER17D103731740	NonProperStrand	1	1	-inf
chr13	113999939	114007143	protein_coding	Esm1	intron	ENSMUSG00000042379	ProperStrand	92	chr13	113980208	114013612	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	8	-22.8736
chr7	80865868	80865935	LINE	L1ME4a	L1	chr7L1ME4a80865847	NonProperStrand	1	chr3	94499445	94499527	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-inf
chr14	52071521	52071621	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	chr14	52071634	52071724	protein_coding	Vmn2r89	utr5	ENSMUSG00000070448	NonProperStrand	29	1	-12.1172
chr1	37998282	38017853	Low_complexity	GA-rich	Low_complexity	chr1GA-rich38014899	ProperStrand	2	chr1	38017868	38018061	Simple_repeat	(GGAGA)n	Simple_repeat	chr1(GGAGA)n38017845	ProperStrand	2	2	-inf
chr8	64718292	64718385	LINE	Lx2	L1	chr8Lx264718163	ProperStrand	2	chr17	39848021	39848044	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr1	139490005	139490113	LINE	L1_Mus3	L1	chr1L1_Mus3139489821	NonProperStrand	2	chr17	39846458	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr15	63674482	63674582	LINE	Lx9	L1	chr15Lx963674193	NonProperStrand	1	chr15	63674656	63674746	LTR	ORR1C2	MaLR	chr15ORR1C263674662	NonProperStrand	1	1	-inf
chr6	3201465	3201515	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	18533190	18533267	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	1	-4.0529
chr4	45507840	45507928	protein_coding	Shb	intron	ENSMUSG00000044813	ProperStrand	384	chr2	161793390	161793409	protein_coding	Ptprt	intron	ENSMUSG00000053141	NonProperStrand	55	1	-8.4825
chr4	137548349	137548439	SINE	MIRb	MIR	chr4MIRb137548352	ProperStrand	2	chr4	137548457	137549598	protein_coding	Eif4g3	utr5	ENSMUSG00000028760	ProperStrand	463	2	-inf
chr17	39847298	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	36063939	36064040	SINE	RSINE1	B4	chr1RSINE136063855	ProperStrand	1	1	-inf
chr16	32630927	32630982	protein_coding	Tfrc	utr3	ENSMUSG00000022797	ProperStrand	40	chr7	125682432	125682526	protein_coding	Tmc7	intron	ENSMUSG00000042246	ProperStrand	40	1	-13.6615
chr13	114522427	114522517	LINE	L1MC1	L1	chr13L1MC1114522415	NonProperStrand	1	chr13	114522764	114522864	LINE	L1MC1	L1	chr13L1MC1114522611	NonProperStrand	1	1	-inf
chr15	86488569	86488659	LINE	L1MA7	L1	chr15L1MA786487499	NonProperStrand	3	chr15	86488756	86488856	SINE	ID_B1	B4	chr15ID_B186488779	NonProperStrand	3	3	-inf
chrX	13997953	13998053	LINE	L1Md_F2	L1	chrXL1Md_F213994387	NonProperStrand	1	chrX	13998104	13998194	Simple_repeat	(GAAA)n	Simple_repeat	chrX(GAAA)n13998083	NonProperStrand	1	1	-inf
chr17	39846414	39846462	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	120933077	120933115	SINE	B2_Mm2	B2	chr14B2_Mm2120932986	ProperStrand	1	1	-inf
chr16	33047640	33047693	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr6	86422755	86422781	protein_coding	C87436	intron	ENSMUSG00000046679	ProperStrand	7	1	-18.1953
chr9	76526628	76526718	LINE	L1_Mur3	L1	chr9L1_Mur376526622	NonProperStrand	1	chr9	76526448	76526548	LINE	Lx7	L1	chr9Lx776526403	ProperStrand	1	1	-inf
chr4	45393820	45393880	LTR	RLTRETN_Mm	ERVK	chr4RLTRETN_Mm45393690	ProperStrand	1	chr4	45392514	45392597	protein_coding	Dcaf10	utr3	ENSMUSG00000035572	NonProperStrand	18	1	-inf
chr14	38864281	38864381	LINE	L1Md_F2	L1	chr14L1Md_F238859532	NonProperStrand	2	chr14	38872002	38872092	LINE	L1_Mus3	L1	chr14L1_Mus338871894	ProperStrand	1	1	-inf
chr5	146261174	146261233	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	95748924	95748952	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-5.2318
chr9	123461970	123462016	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr10	127197919	127198008	protein_coding	Rdh1	intron	ENSMUSG00000089789	NonProperStrand	10	1	-4.3847
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr11	116222086	116222103	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	30	1	-13.0309
chr10	81181119	81181270	SINE	B1_Mur2	Alu	chr10B1_Mur281181201	NonProperStrand	29	chr18	61319466	61319542	protein_coding	Hmgxb3	intron	ENSMUSG00000024622	ProperStrand	18	1	-15.9381
chr2	22744854	22744886	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	23110404	23110453	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-4.7505
chr8	84672089	84672112	LINE	Lx3C	L1	chr8Lx3C84671535	ProperStrand	9	chr8	84672243	84672359	SINE	RSINE1	B4	chr8RSINE184672264	ProperStrand	3	1	-21.0885
chr11	4180163	4180247	lincRNA	Gm11959	intron	ENSMUSG00000085559	ProperStrand	18	chr1	135510199	135510238	lincRNA	Gm17713	intron	ENSMUSG00000092104	NonProperStrand	21	1	-16.5851
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr11	30127461	30146774	protein_coding	Spnb2	intron	ENSMUSG00000020315	ProperStrand	88	2	-11.4342
chr5	33316583	33316683	protein_coding-noncoding	Depdc5	utr5	ENSMUSG00000037426	NonProperStrand	11	chr5	33316836	33316926	protein_coding	Depdc5	intron	ENSMUSG00000037426	NonProperStrand	42	1	-16.2438
chr11	82529570	82529660	LINE	L1M4	L1	chr11L1M482529494	NonProperStrand	1	chr11	82529316	82529416	SINE	B1_Mur1	Alu	chr11B1_Mur182529266	NonProperStrand	1	1	-inf
chr11	73705210	73705300	LTR	RMER3D-int	ERVK	chr11RMER3D-int73704969	ProperStrand	1	chr11	73705371	73705471	SINE	B1_Mus1	Alu	chr11B1_Mus173705369	NonProperStrand	1	1	-inf
chr11	44431883	44431983	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	chr11	51367911	51368001	protein_coding	Col23a1	intron	ENSMUSG00000063564	ProperStrand	46	1	-11.0841
chr4	70388102	70388181	LINE	L1Md_F2	L1	chr4L1Md_F270385446	NonProperStrand	2	chr17	39846660	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr16	25348767	25348857	protein_coding	Tprg	intron	ENSMUSG00000048399	NonProperStrand	7	chr16	29331693	29331793	protein_coding	Atp13a5	intron	ENSMUSG00000048939	ProperStrand	4	1	-inf
chr17	39847440	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	28260423	28260443	LTR	MTE2b	MaLR	chr5MTE2b28260337	NonProperStrand	1	1	-inf
chr13	51131005	51131095	LTR	IAPEz-int	ERVK	chr13IAPEz-int51129338	ProperStrand	4	chr13	51131105	51131205	LTR	IAPLTR2_Mm	ERVK	chr13IAPLTR2_Mm51131101	ProperStrand	3	3	-inf
chr7	136966840	136966880	LTR	RLTR11B	ERVK	chr7RLTR11B136966703	NonProperStrand	2	chr15	99189044	99189074	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	1	-18.5502
chr2	5379272	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr16	33726448	33726464	protein_coding	Heg1	exon	ENSMUSG00000075254	NonProperStrand	5	1	-9.6307
chr17	39846718	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	69661561	69661584	protein_coding	Plscr3	intron	ENSMUSG00000019461	NonProperStrand	2	1	-5.3533
chr7	130988726	130988826	LINE	L1MA8	L1	chr7L1MA8130988654	ProperStrand	1	chr7	130988514	130988604	LINE	Lx8	L1	chr7Lx8130988049	ProperStrand	1	1	-inf
chr2	31674116	31674216	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	chr16	8479271	8479361	protein_coding	Mettl22	intron	ENSMUSG00000039345	ProperStrand	14	1	-13.2845
chr10	78521150	78521171	LINE	Lx4B	L1	chr10Lx4B78520614	NonProperStrand	1	chr17	39848623	39848749	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chr2	90395132	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.5827
chr10	127659971	127660086	SINE	B1_Mus1	Alu	chr10B1_Mus1127660001	NonProperStrand	1	chr10	93496584	93496601	protein_coding	Vezt	intron	ENSMUSG00000036099	NonProperStrand	24	1	-inf
chr7	104949364	104949454	protein_coding	Pak1	intron	ENSMUSG00000030774	ProperStrand	5	chr3	137928241	137928341	protein_coding	Adh1	intron	ENSMUSG00000074207	NonProperStrand	2	1	-23.2669
chr17	33670504	33670557	protein_coding	Adamts10	intron	ENSMUSG00000024299	NonProperStrand	24	chr2	165832112	165832142	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	1	-10.6777
chr15	58988056	58988135	LTR	LTR50	ERVL	chr15LTR5058987948	NonProperStrand	4	chr9	123461905	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr8	78622631	78622688	LINE	L1Md_T	L1	chr8L1Md_T78621688	ProperStrand	16	chr8	111739882	111739947	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	NonProperStrand	118	1	-13.3526
chr2	144257111	144257163	LTR	ORR1B2	MaLR	chr2ORR1B2144256923	ProperStrand	1	chr16	35981616	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-inf
chr17	28038100	28042665	protein_coding	Taf11	intron	ENSMUSG00000024218	NonProperStrand	26	chr17	28008340	28015874	protein_coding	Uhrf1bp1	intron	ENSMUSG00000039512	ProperStrand	171	2	-18.4492
chr11	109011643	109011987	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	39847066	39847468	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	110	-inf
chr10	95190144	95190183	LTR	MTA_Mm	MaLR	chr10MTA_Mm95189887	ProperStrand	1	chr17	39846818	39846882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	46136459	46137405	LTR	RMER10A	ERVL	chr11RMER10A46137227	ProperStrand	1	chr17	39846452	39846506	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	54011310	54011410	LTR	RMER17A2	ERVK	chr10RMER17A254010571	ProperStrand	1	chr10	54011425	54011515	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n54011451	NonProperStrand	1	1	-inf
chr4	108518578	108518668	protein_coding-noncoding	Txndc12	utr5	ENSMUSG00000028567	NonProperStrand	1	chr4	108518474	108518574	protein_coding	Txndc12	intron	ENSMUSG00000028567	NonProperStrand	2	1	-inf
chr17	39846660	39846715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	107952185	107952289	protein_coding	Gmppb	intron	ENSMUSG00000070284	ProperStrand	4	1	-3.6552
chr6	38606173	38606263	LTR	MTEa	MaLR	chr6MTEa38606193	ProperStrand	4	chr4	45533386	45533486	protein_coding	Shb	intron	ENSMUSG00000044813	NonProperStrand	9	2	-inf
chr18	86376509	86376609	LINE	L1Md_T	L1	chr18L1Md_T86370785	NonProperStrand	1	chr17	46162719	46162809	protein_coding	Vegfa	intron	ENSMUSG00000023951	NonProperStrand	26	1	-inf
chr5	140360220	140360305	LTR	MTE2b	MaLR	chr5MTE2b140360084	ProperStrand	6	chr9	123462138	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr16	15556351	15556405	protein_coding	Ube2v2	utr3	ENSMUSG00000022674	ProperStrand	16	chr13	97190555	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chrX	87238364	87238402	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr17	47648783	47648831	protein_coding	Ccnd3	intron	ENSMUSG00000034165	ProperStrand	70	1	-9.1732
chr11	6415940	6415975	protein_coding	Myo1g	exon	ENSMUSG00000020437	NonProperStrand	91	chr9	108306461	108315311	protein_coding	Ccdc36	utr3	ENSMUSG00000047220	NonProperStrand	33	1	-12.3936
chr2	32546146	32546170	protein_coding	Fpgs	intron	ENSMUSG00000009566	NonProperStrand	21	chr17	28282285	28282352	protein_coding	Scube3	intron	ENSMUSG00000038677	ProperStrand	15	1	-16.9358
chr11	83493159	83493279	LTR	RMER17B	ERVK	chr11RMER17B83492945	ProperStrand	2	chr5	139563231	139563249	protein_coding	Prkar1b	intron	ENSMUSG00000025855	ProperStrand	2	1	-19.8939
chr1	164455806	164455906	LINE	L1_Mm	L1	chr1L1_Mm164455037	ProperStrand	2	chr1	164455939	164456029	LTR	MTC	MaLR	chr1MTC164455965	ProperStrand	1	1	-inf
chr2	152297410	152297439	SINE	B1_Mm	Alu	chr2B1_Mm152297312	NonProperStrand	1	chr5	132197926	132197994	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-inf
chr2	47111469	47111559	LTR	RLTR26	ERVK	chr2RLTR2647111445	NonProperStrand	2	chr2	47111299	47111399	SINE	B1_Mur1	Alu	chr2B1_Mur147111296	NonProperStrand	2	2	-inf
chr14	63496274	63496307	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	chr9	21397658	21398063	protein_coding	1810026J23Rik	exon	ENSMUSG00000048429	ProperStrand	26	1	-11.9434
chr17	50420126	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr2	30194741	30194805	protein_coding	Nup188	intron	ENSMUSG00000052533	NonProperStrand	14	1	-12.9071
chr13	9834318	9834384	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr2	69924365	69924456	protein_coding	Myo3b	intron	ENSMUSG00000042064	ProperStrand	45	1	-9.6864
chr17	39846701	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	102122972	102123078	SINE	B1_Mus1	Alu	chr15B1_Mus1102122944	NonProperStrand	1	1	-inf
chr17	39847506	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	31017421	31017519	protein_coding	Skil	exon	ENSMUSG00000027660	NonProperStrand	4	2	-6.7714
chrX	142371826	142371904	LTR	IAPLTR1a_Mm	ERVK	chrXIAPLTR1a_Mm142371603	NonProperStrand	4	chr17	23820200	23820256	protein_coding	Cldn9	exon	ENSMUSG00000066720	NonProperStrand	76	1	-17.2688
chr11	120631072	120631163	LTR	RLTR13B1	ERVK	chr11RLTR13B1120630408	NonProperStrand	3	chr11	120632176	120632206	SINE	B1_Mus2	Alu	chr11B1_Mus2120632079	ProperStrand	1	1	-inf
chr3	9021762	9021862	LTR	HERVL40-int	ERVL	chr3HERVL40-int9021684	NonProperStrand	1	chr3	9022148	9022238	LTR	HERVL40-int	ERVL	chr3HERVL40-int9022091	NonProperStrand	1	1	-inf
chr7	80081533	80081569	LINE	Lx8	L1	chr7Lx880081334	ProperStrand	26	chr9	61913512	61913924	protein_coding	Glce	intron	ENSMUSG00000032252	ProperStrand	176	1	-11.5551
chr3	90212705	90212959	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	chr7	99971894	99971957	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	2	-17.2396
chr13	72626218	72626234	Simple_repeat	(TAGA)n	Simple_repeat	chr13(TAGA)n72625825	ProperStrand	1	chr19	5797450	5797580	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr16	36856422	36858529	protein_coding	Iqcb1	intron	ENSMUSG00000022837	ProperStrand	13	chrX	52129161	52129200	pseudogene	Gm14590	.	ENSMUSG00000081795	NonProperStrand	3	3	-inf
chr16	35981604	35981648	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr18	75119962	75120009	protein_coding	Lipg	intron	ENSMUSG00000053846	NonProperStrand	17	1	-12.4474
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	17122115	17122199	protein_coding	2610318N02Rik	intron	ENSMUSG00000049916	ProperStrand	11	1	-4.5229
chr13	80997150	80997240	LTR	ORR1A2-int	MaLR	chr13ORR1A2-int80997119	NonProperStrand	1	chr13	80996770	80996870	LTR	ORR1A2	MaLR	chr13ORR1A280996782	NonProperStrand	1	1	-inf
chr5	24144365	24144431	SINE	B1_Mm	Alu	chr5B1_Mm24144292	NonProperStrand	1	chr3	88560899	88560975	protein_coding	Syt11	intron	ENSMUSG00000068923	NonProperStrand	69	1	-inf
chr6	109003317	109003407	LINE	L1Md_T	L1	chr6L1Md_T109002999	ProperStrand	1	chr6	109002906	109003006	LINE	MusHAL1	L1	chr6MusHAL1109002854	ProperStrand	1	1	-inf
chr11	26516056	26516146	LTR	MERVL_2A-int	ERVL	chr11MERVL_2A-int26515715	ProperStrand	2	chr17	39846427	39846463	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr1	181908631	181908746	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	chr9	83846195	83846232	protein_coding	Bckdhb	intron	ENSMUSG00000032263	ProperStrand	63	2	-12.6760
chr4	133141967	133142057	protein_coding-noncoding	Gpn2	utr5	ENSMUSG00000028848	ProperStrand	2	chr4	133142051	133142151	protein_coding	Gpn2	intron	ENSMUSG00000028848	ProperStrand	9	2	-inf
chr18	6241363	6241463	protein_coding	Kif5b	utr5	ENSMUSG00000006740	ProperStrand	37	chr6	113714585	113714675	protein_coding	Atp2b2	intron	ENSMUSG00000030302	NonProperStrand	82	1	-12.3707
chr4	148514832	148514940	LTR	RMER17A	ERVK	chr4RMER17A148514727	ProperStrand	2	chr4	148526015	148530801	protein_coding	Pgd	intron	ENSMUSG00000028961	NonProperStrand	19	2	-inf
chr11	98027828	98027917	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	chr5	114851974	114852001	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-7.9681
chr17	85007446	85007534	protein_coding	Plekhh2	intron	ENSMUSG00000040852	ProperStrand	89	chr13	97190568	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.3645
chr10	79764369	79764469	protein_coding-noncoding	Apc2	utr5	ENSMUSG00000020135	NonProperStrand	1	chr10	79764488	79764578	protein_coding	Apc2	utr5	ENSMUSG00000020135	NonProperStrand	41	1	-inf
chr2	88423908	88424008	LTR	MYSERV-int	ERVK	chr2MYSERV-int88423818	ProperStrand	1	chr2	88424332	88424422	LTR	RLTR15	ERVK	chr2RLTR1588424312	NonProperStrand	1	1	-inf
chr5	105798427	105798499	LINE	L1Md_F2	L1	chr5L1Md_F2105797620	NonProperStrand	27	chr6	140445316	140445356	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	1	-11.0959
chr6	3201470	3201525	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	140955746	140955807	protein_coding	Dhx32	intron	ENSMUSG00000030986	ProperStrand	21	1	-4.8667
chr15	103437893	103437993	LTR	IAPEz-int	ERVK	chr15IAPEz-int103437600	NonProperStrand	1	chr15	103438295	103438385	LTR	IAPEz-int	ERVK	chr15IAPEz-int103438239	NonProperStrand	1	1	-inf
chr3	104823406	104823530	protein_coding	Cttnbp2nl	intron	ENSMUSG00000062127	ProperStrand	31	chr17	8385965	8385981	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-15.3107
chr6	86120963	86120979	LINE	L1_Mus3	L1	chr6L1_Mus386120240	ProperStrand	1	chr6	33447016	33447149	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-inf
chr17	39847551	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	74354435	74354472	protein_coding-noncoding	Ahrr	utr3	ENSMUSG00000021575	NonProperStrand	3	1	-4.3512
chr7	130598962	130599010	DNA	Charlie13a	Charlie	chr7Charlie13a130598868	NonProperStrand	1	chr2	5379265	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr11	58060244	58060334	LTR	MTD	MaLR	chr11MTD58060167	NonProperStrand	4	chr11	58060343	58060445	SINE	B3	B2	chr11B358060323	ProperStrand	6	4	-inf
chr10	72354319	72354409	LTR	ORR1C2	MaLR	chr10ORR1C272354215	ProperStrand	1	chr10	72354461	72354561	LTR	ORR1C2	MaLR	chr10ORR1C272354426	ProperStrand	1	1	-inf
chr11	109011662	109011706	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	69039621	69039655	protein_coding	Spc25	intron	ENSMUSG00000005233	NonProperStrand	4	1	-11.7441
chr1	72203815	72203905	DNA	URR1A	MER1_type	chr1URR1A72203708	ProperStrand	1	chr1	72203913	72204013	SINE	B3A	B2	chr1B3A72203922	NonProperStrand	1	1	-inf
chr2	130872943	130873043	SINE	B3A	B2	chr2B3A130872947	NonProperStrand	3	chr3	121081638	121081728	SINE	MIRm	MIR	chr3MIRm121081570	ProperStrand	1	1	-inf
chr13	74589785	74589876	LTR	ORR1E	MaLR	chr13ORR1E74589791	ProperStrand	1	chr17	39846462	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	102829377	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr4	151973822	151974218	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n151973810	ProperStrand	1	1	-inf
chr9	80367711	80367801	LINE	L1M2	L1	chr9L1M280367725	ProperStrand	1	chr9	80367436	80367536	LINE	L1_Rod	L1	chr9L1_Rod80367326	ProperStrand	1	1	-inf
chr11	83032255	83035145	LINE	L1Md_F2	L1	chr11L1Md_F283031965	ProperStrand	1	chr11	83013339	83013439	protein_coding	Slfn3	intron	ENSMUSG00000018986	NonProperStrand	2	1	-inf
chr7	97473968	97474068	DNA	RCHARR1	MER1_type	chr7RCHARR197473734	NonProperStrand	1	chr7	97473517	97473607	Simple_repeat	(GAAAA)n	Simple_repeat	chr7(GAAAA)n97473525	ProperStrand	1	1	-inf
chr17	39848200	39848286	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	85046305	85046344	SINE	B4A	B4	chr2B4A85046262	ProperStrand	1	1	-inf
chr10	92708329	92708419	protein_coding	Cdk17	intron	ENSMUSG00000020015	NonProperStrand	10	chr10	90073302	90073402	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	65	1	-15.5427
chr6	42058754	42058854	LINE	L1VL2	L1	chr6L1VL242058075	NonProperStrand	1	chr6	42058978	42059068	LINE	L1_Mus4	L1	chr6L1_Mus442058929	ProperStrand	1	1	-inf
chr9	123462051	123462077	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	40403364	40403393	protein_coding	Crisp3	intron	ENSMUSG00000025433	ProperStrand	10	1	-4.3847
chr9	67419648	67419748	Simple_repeat	(CACTG)n	Simple_repeat	chr9(CACTG)n67419556	NonProperStrand	2	chr9	67419793	67419883	Simple_repeat	(CACTG)n	Simple_repeat	chr9(CACTG)n67419760	NonProperStrand	1	1	-inf
chr1	39948537	39948602	LINE	Lx8	L1	chr1Lx839948374	NonProperStrand	1	chr1	39902314	39902404	SINE	B1_Mur1	Alu	chr1B1_Mur139902258	NonProperStrand	1	1	-inf
chr9	110281288	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	11180670	11180773	protein_coding	Ints8	intron	ENSMUSG00000040738	ProperStrand	18	2	-15.8357
chr16	98074434	98074489	LTR	MTE-int	MaLR	chr16MTE-int98074448	NonProperStrand	1	chr16	98081179	98081258	protein_coding	C2cd2	intron	ENSMUSG00000045975	ProperStrand	23	1	-inf
chr15	99713141	99713205	DNA	URR1B	MER1_type	chr15URR1B99713054	ProperStrand	1	chr1	43785384	43785441	LINE	MusHAL1	L1	chr1MusHAL143785037	ProperStrand	2	1	-inf
chr15	36608607	36608630	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	83	chr11	19978362	19978395	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	2	-14.4107
chr9	100917991	100918024	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	chr8	127204249	127204314	protein_coding	Ttc13	intron	ENSMUSG00000037300	NonProperStrand	38	1	-13.1213
chr6	82768247	82768289	LINE	Lx8	L1	chr6Lx882768104	NonProperStrand	4	chr5	34005242	34005281	protein_coding	Tacc3	intron	ENSMUSG00000037313	NonProperStrand	3	1	-inf
chr10	75936335	75936401	protein_coding	Mcm3ap	intron	ENSMUSG00000001150	ProperStrand	37	chr17	80599789	80599845	protein_coding	Srsf7	utr3	ENSMUSG00000024097	ProperStrand	12	6	-inf
chr18	46165855	46165924	LINE	L1Md_A	L1	chr18L1Md_A46163912	NonProperStrand	3	chr16	72872848	72872871	protein_coding	Robo1	intron	ENSMUSG00000022883	ProperStrand	177	1	-16.2106
chr2	59461684	59461774	protein_coding	Tanc1	intron	ENSMUSG00000035168	NonProperStrand	17	chr2	59458267	59458367	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	1	-12.8549
chr5	31905924	31906006	protein_coding	Mrpl33	intron	ENSMUSG00000029142	ProperStrand	100	chr1	74160958	74160997	protein_coding	Tns1	intron	ENSMUSG00000055322	NonProperStrand	5	1	-16.1746
chr17	39847942	39847991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	97700733	97700792	LTR	IAPLTR4_I	ERVK	chr1IAPLTR4_I97700705	NonProperStrand	1	1	-inf
chr9	123461883	123461919	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	45346528	45346554	protein_coding	Exosc3	intron	ENSMUSG00000028322	ProperStrand	19	1	-3.1531
chr13	112830575	112830653	LINE	L1_Mus3	L1	chr13L1_Mus3112830578	NonProperStrand	1	chr13	112832431	112832498	LINE	MusHAL1	L1	chr13MusHAL1112832376	NonProperStrand	1	1	-inf
chr15	56551978	56552078	processed_transcript	Has2as	.	ENSMUSG00000086541	NonProperStrand	5	chr10	122565825	122565915	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-18.2660
chrX	96159184	96159239	LINE	L1MB1	L1	chrXL1MB196159157	ProperStrand	1	chr17	39846378	39846429	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	60940568	60940633	protein_coding	Tnfrsf13b	intron	ENSMUSG00000010142	ProperStrand	35	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.5390
chr2	171491467	171491567	LINE	L1Md_F2	L1	chr2L1Md_F2171490939	NonProperStrand	1	chr2	171490822	171490912	Simple_repeat	(GAA)n	Simple_repeat	chr2(GAA)n171490712	ProperStrand	1	1	-inf
chr17	39847271	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	14874637	14874753	antisense	Gm11837	.	ENSMUSG00000086587	ProperStrand	8	1	-3.3803
chr18	30343745	30343879	LINE	Lx5	L1	chr18Lx530342811	ProperStrand	1	chr17	39843686	39843709	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr11	72391159	72391253	SINE	B1_Mur1	Alu	chr11B1_Mur172391110	ProperStrand	2	chr19	38798997	38799324	protein_coding	Plce1	intron	ENSMUSG00000024998	NonProperStrand	28	1	-21.0040
chr17	39846576	39846641	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	30944633	30944979	Low_complexity	AT_rich	Low_complexity	chr1AT_rich30944948	NonProperStrand	1	1	-inf
chr13	56463735	56464960	LTR	RMER6B	ERVK	chr13RMER6B56463474	ProperStrand	5	chr17	39847981	39848049	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr5	146261022	146261218	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	31126456	31163109	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	2	-5.6573
chr8	71931156	71931256	LTR	RMER16-int	ERVK	chr8RMER16-int71929961	ProperStrand	1	chr8	71931425	71931515	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n71931337	NonProperStrand	1	1	-inf
chr9	7793245	7793361	protein_coding	Tmem123	utr3	ENSMUSG00000050912	NonProperStrand	4	chr5	100037117	100037143	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	119	1	-16.3593
chr3	87872242	87884995	SINE	B1_Mur3	Alu	chr3B1_Mur387884898	ProperStrand	2	chr18	42275480	42275498	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	NonProperStrand	45	1	-19.8306
chr12	59040488	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr7	28182972	28183068	protein_coding	Spnb4	exon	ENSMUSG00000011751	NonProperStrand	106	1	-8.8888
chr11	120955293	120955393	LINE	Lx7	L1	chr11Lx7120955299	ProperStrand	7	chr11	120954230	120955278	LTR	RMER10B	ERVL	chr11RMER10B120955168	ProperStrand	2	2	-inf
chr4	94718237	94718337	antisense	BC042782	.	ENSMUSG00000087366	ProperStrand	12	chr4	94718065	94718155	protein_coding	Jun	utr5	ENSMUSG00000052684	NonProperStrand	2	2	-inf
chr17	39847440	39847575	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	34972495	34972871	Other	RMER1C	Other	chr19RMER1C34972660	ProperStrand	2	1	-5.4040
chr19	46804054	46804104	protein_coding	As3mt	intron	ENSMUSG00000003559	ProperStrand	85	chr9	59665314	59665359	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-5.6042
chr4	155154495	155154588	lincRNA	Gm13644	intron	ENSMUSG00000085119	NonProperStrand	7	chr16	23110450	23110515	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	10	1	-20.7396
chr12	28438260	28438360	LINE	L1_Mus1	L1	chr12L1_Mus128437502	ProperStrand	6	chr15	78918869	78918959	protein_coding	Eif3l	intron	ENSMUSG00000033047	ProperStrand	16	1	-19.7048
chr5	32762046	32762104	protein_coding	Ppp1cb	intron	ENSMUSG00000014956	NonProperStrand	37	chr17	33883701	33883757	protein_coding	Rab11b	utr3	ENSMUSG00000077450	ProperStrand	25	1	-14.7764
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	9017543	9017609	protein_coding	Mta2	intron	ENSMUSG00000071646	ProperStrand	23	1	-3.1127
chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	112722970	112723010	protein_coding	Gm266	utr3	ENSMUSG00000010529	NonProperStrand	1	1	-inf
chr5	118639675	118639803	SINE	B1F2	Alu	chr5B1F2118639655	NonProperStrand	1	chr5	118642902	118642933	protein_coding	Rnft2	utr3	ENSMUSG00000032850	NonProperStrand	136	1	-inf
chr4	82830000	82830043	LTR	RLTR18B	ERVK	chr4RLTR18B82829871	NonProperStrand	1	chr19	3493954	3494010	protein_coding	Ppp6r3	exon	ENSMUSG00000024908	ProperStrand	213	1	-inf
chr17	39847957	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	59535787	59535818	Simple_repeat	(TTC)n	Simple_repeat	chr15(TTC)n59535730	ProperStrand	1	1	-inf
chr11	75756853	75756904	LTR	MTE2b	MaLR	chr11MTE2b75756691	NonProperStrand	13	chr1	65279580	65279631	protein_coding	Pikfyve	intron	ENSMUSG00000025949	ProperStrand	21	1	-17.2958
chr1	171503045	171503138	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr6	3201517	3201547	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-3.8833
chr11	102476100	102476200	SINE	B1_Mus1	Alu	chr11B1_Mus1102476110	ProperStrand	1	chr11	102476358	102476448	lincRNA	Gm11636	exon	ENSMUSG00000086105	ProperStrand	9	1	-inf
chr1	33947851	33947923	protein_coding	Bend6	intron	ENSMUSG00000042182	NonProperStrand	30	chr14	33967606	33967694	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-12.9494
chr5	29278636	29278754	LINE	Lx	L1	chr5Lx29276070	NonProperStrand	1	chr17	39846941	39846972	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847598	39847669	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	34053817	34053897	protein_coding-noncoding	Mtdh	utr5	ENSMUSG00000022255	ProperStrand	1	1	-inf
chr9	12833869	12833969	LTR	MTB	MaLR	chr9MTB12833876	NonProperStrand	1	chr9	12833625	12833715	LTR	ORR1A2-int	MaLR	chr9ORR1A2-int12831876	NonProperStrand	1	1	-inf
chr3	146020253	146020269	LINE	L1Md_T	L1	chr3L1Md_T146019296	ProperStrand	5	chr9	123461983	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39847442	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	73277703	73277719	LTR	MLT1A0	MaLR	chr6MLT1A073277369	NonProperStrand	1	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	2	-4.9237
chr14	20934131	20934233	SINE	PB1D10	Alu	chr14PB1D1020934151	ProperStrand	1	chr14	20937540	20937595	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n20937547	ProperStrand	1	1	-inf
chr17	39847735	39847766	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	69959620	69959641	LTR	RMER13A	ERVK	chr8RMER13A69959458	NonProperStrand	4	1	-3.7035
chr17	39846462	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	53372382	53372490	protein_coding	9430076C15Rik	intron	ENSMUSG00000090982	ProperStrand	4	1	-3.6552
chr13	112849402	112849470	LTR	MLT1D	MaLR	chr13MLT1D112849402	ProperStrand	1	chr17	39843634	39843692	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chrX	95025862	95025881	LINE	L1M2	L1	chrXL1M295025539	NonProperStrand	10	chr17	39846427	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-5.6971
chr18	75123524	75123569	SINE	B1_Mm	Alu	chr18B1_Mm75123422	NonProperStrand	1	chr11	113445984	113446102	protein_coding	Slc39a11	intron	ENSMUSG00000041654	NonProperStrand	8	1	-inf
chr4	43492784	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr2	34468886	34468945	protein_coding	Mapkap1	intron	ENSMUSG00000038696	ProperStrand	60	1	-7.0929
chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	chr1	89467686	89467834	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	1	-10.0906
chr15	58987282	58987340	SINE	B4A	B4	chr15B4A58987295	ProperStrand	1	chr7	81438750	81438777	protein_coding	Slco3a1	intron	ENSMUSG00000025790	ProperStrand	17	1	-inf
chr12	99363319	99363430	SINE	B2_Mm1t	B2	chr12B2_Mm1t99363296	NonProperStrand	1	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-inf
chr13	44869591	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-3.0443
chrX	94369169	94379950	LINE	Lx7	L1	chrXLx794368892	NonProperStrand	1	chr17	39847958	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	47488418	47488518	LTR	RLTR25B	ERVK	chr10RLTR25B47487707	ProperStrand	1	chr10	47488612	47488702	LTR	RLTR45	ERVK	chr10RLTR4547488614	NonProperStrand	1	1	-inf
chr9	77451344	77451397	LINE	L1_Rod	L1	chr9L1_Rod77451349	ProperStrand	5	chr6	144999319	144999393	protein_coding	Bcat1	intron	ENSMUSG00000030268	ProperStrand	35	1	-18.2660
chr2	156164828	156164911	antisense	Gm14252	.	ENSMUSG00000085546	ProperStrand	14	chr6	125010051	125010124	protein_coding	Acrbp	intron	ENSMUSG00000072770	ProperStrand	9	1	-18.9138
chr14	115103408	115103498	LINE	L1_Mus1	L1	chr14L1_Mus1115103343	NonProperStrand	1	chr14	115103197	115103297	LTR	RLTR13C2	ERVK	chr14RLTR13C2115102543	ProperStrand	1	1	-inf
chr5	146248526	146248593	LINE	L1Md_A	L1	chr5L1Md_A146247943	ProperStrand	1	chr8	12899288	12899345	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-inf
chr11	34371934	34372024	protein_coding	Dock2	intron	ENSMUSG00000020143	ProperStrand	20	chr2	44861499	44861599	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	25	1	-16.0409
chr1	5522284	5522374	LINE	Lx4B	L1	chr1Lx4B5522167	NonProperStrand	1	chr1	5522067	5522167	SINE	B2_Mm1a	B2	chr1B2_Mm1a5521981	NonProperStrand	1	1	-inf
chr16	33014955	33014998	protein_coding	Lrch3	utr3	ENSMUSG00000022801	ProperStrand	84	chr4	46469967	46471400	protein_coding	Anp32b	intron	ENSMUSG00000028333	ProperStrand	54	1	-11.5582
chr14	51295101	51295191	LTR	ORR1D1	MaLR	chr14ORR1D151295090	NonProperStrand	1	chr14	51542340	51542440	protein_coding	Osgep	intron	ENSMUSG00000006289	ProperStrand	1	1	-inf
chr17	39843880	39847626	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr7	104230772	104230874	protein_coding	Gab2	intron	ENSMUSG00000004508	ProperStrand	17	1	-5.3771
chr2	148793266	148793283	LINE	Lx	L1	chr2Lx148791125	ProperStrand	1	chr1	59543706	59543723	protein_coding	Fzd7	utr3	ENSMUSG00000041075	NonProperStrand	8	1	-inf
chr11	115315843	115315859	SINE	B1_Mus2	Alu	chr11B1_Mus2115315741	NonProperStrand	2	chr8	72320165	72320191	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	2	-inf
chr9	21832214	21832285	protein_coding	Elavl3	intron	ENSMUSG00000003410	ProperStrand	162	chr5	121205007	121205086	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-7.9010
chr9	123461957	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	114701978	114723668	protein_coding	Cmtm8	intron	ENSMUSG00000041012	NonProperStrand	39	2	-3.4935
chr9	47826115	47826157	LINE	Lx8	L1	chr9Lx847825803	NonProperStrand	5	chr17	39846749	39846801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.8332
chr17	39846465	39846686	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	85474632	85537231	protein_coding	Cyyr1	intron	ENSMUSG00000041134	ProperStrand	11	2	-3.3422
chr11	17216033	17216133	LINE	MusHAL1	L1	chr11MusHAL117216019	NonProperStrand	1	chr11	17215940	17216030	SINE	B1_Mm	Alu	chr11B1_Mm17215882	NonProperStrand	1	1	-inf
chr11	109011728	109011745	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	15848671	15848797	protein_coding	Gm106	intron	ENSMUSG00000032719	NonProperStrand	24	1	-7.9304
chr7	90130513	90131078	LINE	L1Md_F2	L1	chr7L1Md_F290128535	ProperStrand	8	chr17	39847552	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-4.3369
chr7	34202350	34202366	LTR	MMETn-int	ERVK	chr7MMETn-int34202121	ProperStrand	20	chr9	15314857	15314984	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	3	-20.7164
chr5	140758927	140759011	protein_coding	Mad1l1	intron	ENSMUSG00000029554	ProperStrand	144	chr13	97190562	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-5.8955
chr17	39848263	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	60736435	60736525	antisense	Gm16516	.	ENSMUSG00000042549	ProperStrand	17	3	-9.2628
chr12	40465121	40465211	LINE	L1_Mus3	L1	chr12L1_Mus340464871	NonProperStrand	2	chr13	83798877	83798977	protein_coding	Mef2c	intron	ENSMUSG00000005583	ProperStrand	10	1	-20.4467
chr13	44869597	44870019	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr16	11433635	11435340	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	2	-3.3794
chr8	123103031	123103059	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-9.4700
chr17	39847881	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	56027396	56027486	LTR	RLTR10A	ERVK	chr17RLTR10A56027288	NonProperStrand	5	1	-3.2379
chr17	39847677	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	69476127	69479740	LTR	MLT1A0	MaLR	chr9MLT1A069479651	ProperStrand	5	1	-3.2379
chr1	136364891	136364963	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr12	80398878	80398895	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-8.2039
chr6	60406670	60406760	LINE	L1Md_F2	L1	chr6L1Md_F260406442	NonProperStrand	1	chr6	60406221	60406321	LINE	L1_Mur3	L1	chr6L1_Mur360405767	NonProperStrand	1	1	-inf
chr19	33896516	33896616	LINE	L1_Mm	L1	chr19L1_Mm33895833	ProperStrand	1	chr19	33892992	33893082	LINE	L1_Mus4	L1	chr19L1_Mus433892582	NonProperStrand	1	1	-inf
chr10	78026959	78027046	LTR	MTD	MaLR	chr10MTD78026918	ProperStrand	1	chr17	39847552	39847619	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	117479345	117479445	LTR	MTD	MaLR	chr4MTD117479282	NonProperStrand	3	chr4	117479478	117479568	SINE	B1_Mur1	Alu	chr4B1_Mur1117479488	NonProperStrand	3	3	-inf
chr2	25440989	25441296	protein_coding	B230208H17Rik	exon	ENSMUSG00000015087	NonProperStrand	22	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	2	-13.6983
chr17	39847257	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	58474763	58474893	protein_coding	Clk1	intron	ENSMUSG00000026034	ProperStrand	6	1	-3.9545
chr19	21647912	21647947	SINE	B1_Mus1	Alu	chr19B1_Mus121647824	ProperStrand	1	chr17	39843484	39843524	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr1	91924852	91924942	SINE	B1_Mm	Alu	chr1B1_Mm91924852	ProperStrand	2	chr1	91924741	91924841	SINE	B4	B4	chr1B491924770	ProperStrand	2	2	-inf
chr17	39847381	39848014	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	122123773	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	43	-11.5431
chr19	42394477	42394525	protein_coding	Crtac1	intron	ENSMUSG00000042401	ProperStrand	106	chr11	88578906	88579013	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-5.1496
chr17	39847440	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	136760794	136989604	protein_coding	Cux1	intron	ENSMUSG00000029705	ProperStrand	30	5	-4.3157
chr9	108937109	108942114	LINE	L1_Mus2	L1	chr9L1_Mus2108937119	ProperStrand	1	chr17	39847477	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	168222980	168223070	LINE	L1ME2	L1	chr2L1ME2168222910	ProperStrand	1	chr2	168222751	168222851	Simple_repeat	(CCCCCT)n	Simple_repeat	chr2(CCCCCT)n168222766	NonProperStrand	5	1	-inf
chr19	7294682	7294733	SINE	B1_Mur1	Alu	chr19B1_Mur17294681	ProperStrand	1	chr19	7294276	7294317	SINE	ID_B1	B4	chr19ID_B17294263	NonProperStrand	1	1	-inf
chr5	46393771	46393871	LTR	RLTR23	ERV1	chr5RLTR2346393683	ProperStrand	1	chr5	38756390	38756480	protein_coding	Slc2a9	intron	ENSMUSG00000005107	NonProperStrand	5	1	-inf
chr9	97100077	97100169	LINE	Lx8	L1	chr9Lx897100014	ProperStrand	9	chr17	39843742	39843795	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-6.6743
chr17	39847284	39847325	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	92203158	92203180	LTR	MLT2B3	ERVL	chr1MLT2B392202993	ProperStrand	3	1	-5.4882
chr12	111545680	111545780	LTR	RLTR10-int	ERVK	chr12RLTR10-int111544003	NonProperStrand	1	chr12	111545952	111546042	LTR	RLTR10	ERVK	chr12RLTR10111545925	NonProperStrand	1	1	-inf
chr17	39846419	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	87365777	87366213	protein_coding	N6amt1	intron	ENSMUSG00000044442	ProperStrand	2	2	-inf
chr16	4676357	4676433	protein_coding	Coro7	intron	ENSMUSG00000039637	ProperStrand	312	chr11	88508925	88508957	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-3.1268
chr17	39847512	39847576	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	54985834	54985920	LTR	MER65-int	ERV1	chr6MER65-int54985853	ProperStrand	1	1	-inf
chr11	106676027	106676179	antisense	Gm11706	.	ENSMUSG00000084930	ProperStrand	2	chr11	106675942	106678325	protein_coding	Ccdc45	exon	ENSMUSG00000018372	NonProperStrand	26	2	-inf
chr16	36576188	36576288	LINE	L1VL4	L1	chr16L1VL436574460	ProperStrand	1	chr16	34854086	34854176	protein_coding	Mylk	intron	ENSMUSG00000022836	ProperStrand	25	1	-inf
chrX	161570882	161570972	protein_coding	Glra2	intron	ENSMUSG00000018589	NonProperStrand	2	chrX	161588345	161588445	protein_coding	Glra2	intron	ENSMUSG00000018589	ProperStrand	4	1	-22.1285
chr11	68250393	68250417	protein_coding	Pik3r5	intron	ENSMUSG00000020901	NonProperStrand	75	chr3	41560015	41560106	protein_coding	D3Ertd751e	utr3	ENSMUSG00000025766	ProperStrand	46	1	-12.1093
chr15	25753255	25753314	LTR	HERV16-int	ERVL	chr15HERV16-int25753255	ProperStrand	1	chr17	39847530	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	116904807	116904869	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int116903488	ProperStrand	5	chr3	116906832	116906888	LTR	IAPEz-int	ERVK	chr3IAPEz-int116906607	NonProperStrand	8	1	-20.8574
chr2	103585616	103585700	protein_coding	Nat10	intron	ENSMUSG00000027185	NonProperStrand	54	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.7507
chr11	104335651	104336252	SINE	B1_Mus1	Alu	chr11B1_Mus1104335657	NonProperStrand	1	chr3	129569462	129569527	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-inf
chr14	121375319	121375389	LTR	RMER15-int	ERVL	chr14RMER15-int121375321	NonProperStrand	1	chr14	121375978	121376017	SINE	RSINE1	B4	chr14RSINE1121375967	ProperStrand	1	1	-inf
chr4	144558013	144558113	LTR	MTEa-int	MaLR	chr4MTEa-int144558035	NonProperStrand	1	chr4	144557810	144557900	LTR	MTEa	MaLR	chr4MTEa144557718	NonProperStrand	1	1	-inf
chr16	87491412	87493716	protein_coding	Cct8	intron	ENSMUSG00000025613	ProperStrand	46	chr4	43173101	43173160	protein_coding	Unc13b	intron	ENSMUSG00000028456	ProperStrand	85	1	-11.8579
chr14	121768713	121768788	protein_coding	Stk24	intron	ENSMUSG00000063410	ProperStrand	87	chr4	57662474	57662542	protein_coding	Palm2	intron	ENSMUSG00000090053	ProperStrand	22	1	-13.3101
chr13	80228392	80228482	LINE	Lx7	L1	chr13Lx780228222	ProperStrand	1	chr13	80228598	80228698	LINE	Lx7	L1	chr13Lx780228548	ProperStrand	1	1	-inf
chr9	123461931	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	81645457	81645532	protein_coding	Slco3a1	intron	ENSMUSG00000025790	ProperStrand	17	1	-3.3592
chr9	123461802	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	114851974	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	8	-3.8079
chr17	16897553	16897653	LTR	IAPEz-int	ERVK	chr17IAPEz-int16897162	NonProperStrand	1	chr17	16897998	16898088	LTR	IAPEz-int	ERVK	chr17IAPEz-int16897728	NonProperStrand	1	1	-inf
chr3	121451928	121451968	LTR	IAPEz-int	ERVK	chr3IAPEz-int121451902	ProperStrand	1	chr3	121455050	121457093	LTR	MMETn-int	ERVK	chr3MMETn-int121454634	ProperStrand	2	1	-inf
chr7	84355239	84355339	SINE	MIR	MIR	chr7MIR84355213	ProperStrand	1	chr2	20540625	20540715	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-inf
chr4	132317017	132317035	SINE	B3A	B2	chr4B3A132316990	ProperStrand	2	chr15	35462179	35462252	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-18.0128
chr5	146261045	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	165996685	165996780	protein_coding	Sell	intron	ENSMUSG00000026581	NonProperStrand	23	1	-6.9599
chr12	73109015	73109057	SINE	B1_Mus1	Alu	chr12B1_Mus173108939	ProperStrand	1	chr17	70963685	70963759	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr17	24240810	24241413	protein_coding	Pdpk1	intron	ENSMUSG00000024122	ProperStrand	64	chr15	9112593	9112645	protein_coding	Lmbrd2	intron	ENSMUSG00000039704	NonProperStrand	39	1	-12.7633
chrX	136270388	136271314	protein_coding-noncoding	Tbc1d8b	utr5	ENSMUSG00000042473	ProperStrand	2	chrX	136271344	136271369	protein_coding	Tbc1d8b	intron	ENSMUSG00000042473	ProperStrand	23	1	-20.7239
chr1	119461433	119461451	LINE	Lx2B	L1	chr1Lx2B119461299	ProperStrand	7	chr17	39847440	39847858	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-4.7560
chr4	137771619	137771675	lincRNA	2310026L22Rik	intron	ENSMUSG00000078519	NonProperStrand	6	chr4	137772591	137772665	protein_coding	Hp1bp3	utr5	ENSMUSG00000028759	NonProperStrand	73	1	-16.4401
chr17	70963689	70963779	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr10	81056542	81056642	protein_coding	Tle6	intron	ENSMUSG00000034758	ProperStrand	17	1	-8.7425
mmu-miR-32-5p	0	21	miRNA	mmu-miR-32-5p	.	mmu-miR-32-5p	ProperStrand	1	chr13	109779695	109779770	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-inf
chr6	3201469	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	3645451	3645498	protein_coding	Tsen34	utr5	ENSMUSG00000035585	ProperStrand	35	1	-3.8833
chr10	8476966	8477030	protein_coding	Sash1	intron	ENSMUSG00000015305	ProperStrand	34	chr5	20999549	20999581	protein_coding	Fbxl13	intron	ENSMUSG00000048520	ProperStrand	33	1	-14.3835
chr15	73395790	73395863	protein_coding	Dennd3	intron	ENSMUSG00000036661	NonProperStrand	30	chr15	73411016	73411080	protein_coding	Slc45a4	utr3	ENSMUSG00000079020	ProperStrand	12	1	-16.6978
chr6	45544575	45544594	protein_coding	Cntnap2	intron	ENSMUSG00000039419	NonProperStrand	121	chr2	91670944	91670960	protein_coding	Ambra1	intron	ENSMUSG00000040506	NonProperStrand	61	1	-10.5805
chr17	39848538	39848594	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr16	36828454	36828551	protein_coding	Eaf2	intron	ENSMUSG00000022838	NonProperStrand	5	1	-6.4438
chr1	113904188	113904276	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	16	chr11	114671818	114672273	SINE	B4A	B4	chr11B4A114671799	ProperStrand	7	1	-19.4186
chr9	61508720	61508820	LINE	L1M3	L1	chr9L1M361508459	NonProperStrand	1	chr9	61509087	61509177	SINE	B1_Mur4	Alu	chr9B1_Mur461509070	NonProperStrand	1	1	-inf
chr5	146261266	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr6	38747964	38818255	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	1	-7.3041
chr17	39843828	39843910	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr14	34403259	34403316	protein_coding	Ptpn20	intron	ENSMUSG00000021940	ProperStrand	8	1	-6.9216
chr3	32331649	32331753	protein_coding	Pik3ca	intron	ENSMUSG00000027665	NonProperStrand	80	chr18	65620979	65620995	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	1	-8.7014
chr10	14622328	14622418	LINE	L1Md_T	L1	chr10L1Md_T14622330	NonProperStrand	3	chr10	14621954	14622054	LINE	Lx	L1	chr10Lx14621219	ProperStrand	3	3	-inf
chr14	100240864	100240891	LTR	MLT1E	MaLR	chr14MLT1E100240794	ProperStrand	1	chr9	123462076	123462145	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	38448085	38448174	protein_coding	Ubn2	intron	ENSMUSG00000038538	ProperStrand	33	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.8318
chr17	39845864	39845964	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr10	60285254	60285344	protein_coding	Unc5b	intron	ENSMUSG00000020099	NonProperStrand	10	1	-5.3115
chr13	33897478	33899301	LINE	L1Md_F2	L1	chr13L1Md_F233897771	NonProperStrand	1	chr16	94410424	94410456	protein_coding	Hlcs	intron	ENSMUSG00000040820	NonProperStrand	74	1	-inf
chr11	52056068	52056154	protein_coding	Skp1a	intron	ENSMUSG00000036309	ProperStrand	3	chr11	116548047	116548102	protein_coding	St6galnac2	intron	ENSMUSG00000057286	ProperStrand	31	2	-inf
chr15	35766035	35766112	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	chr13	97190549	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.6830
chr6	3201498	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	4638679	4638805	protein_coding	Coro7	intron	ENSMUSG00000039637	NonProperStrand	3	1	-9.0398
chr10	46154379	46154400	LINE	Lx2B	L1	chr10Lx2B46154098	ProperStrand	1	chr12	37898998	37899029	protein_coding	Meox2	intron	ENSMUSG00000036144	ProperStrand	3	1	-inf
chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	chr15	83149666	83149761	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-10.4041
chr6	107109628	107109718	LINE	Lx9	L1	chr6Lx9107109487	ProperStrand	1	chr6	107109763	107109863	LINE	Lx9	L1	chr6Lx9107109652	ProperStrand	1	1	-inf
chr18	61636712	61636740	LTR	MTD	MaLR	chr18MTD61636561	ProperStrand	1	chr18	84588664	84588702	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-inf
chr5	110468548	110468633	SINE	B2_Mm2	B2	chr5B2_Mm2110468555	NonProperStrand	1	chr7	24903030	24903052	protein_coding	Zfp112	intron	ENSMUSG00000052675	ProperStrand	29	1	-inf
chr17	39847206	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	95561146	95561207	protein_coding	Ces1a	intron	ENSMUSG00000071047	NonProperStrand	4	1	-4.8204
chr9	118674950	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr18	7610729	7610843	protein_coding	Mpp7	intron	ENSMUSG00000057440	ProperStrand	99	1	-4.9943
chr11	82767443	82767516	antisense	1700003F17Rik	.	ENSMUSG00000086327	ProperStrand	6	chr14	21610070	21610153	protein_coding	Camk2g	intron	ENSMUSG00000021820	NonProperStrand	161	1	-14.8140
chr6	56931397	56931487	LINE	L1_Mus1	L1	chr6L1_Mus156925977	NonProperStrand	1	chr10	75694822	75694922	protein_coding	Prmt2	intron	ENSMUSG00000020230	ProperStrand	130	1	-inf
chr15	51813104	51813227	protein_coding	Rad21	intron	ENSMUSG00000022314	ProperStrand	45	chr13	97190563	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.6844
chr13	44869594	44869614	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr12	105974991	105975008	protein_coding	Dicer1	intron	ENSMUSG00000041415	ProperStrand	3	1	-10.7726
chr17	56418629	56418720	protein_coding	Plin3	utr3	ENSMUSG00000024197	ProperStrand	33	chr9	98957096	98957112	protein_coding	Pik3cb	intron	ENSMUSG00000032462	ProperStrand	11	1	-16.7373
chr17	26938005	26938030	LTR	MTA_Mm-int	MaLR	chr17MTA_Mm-int26937625	ProperStrand	1	chr9	110281293	110281314	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr2	85062922	85063037	LINE	Lx	L1	chr2Lx85062860	ProperStrand	1	chr17	39847611	39847648	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	85177744	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	5	-16.1682
chr1	84712505	84712595	LINE	Lx	L1	chr1Lx84712404	NonProperStrand	1	chr1	84712750	84712850	LTR	RMER16	ERVK	chr1RMER1684712730	ProperStrand	1	1	-inf
chr14	21578573	21578595	protein_coding	Camk2g	intron	ENSMUSG00000021820	NonProperStrand	161	chrX	49152464	49152542	protein_coding	Usp26	intron	ENSMUSG00000055780	ProperStrand	6	1	-14.8152
chr8	47982822	47982912	LTR	RMER15-int	ERVL	chr8RMER15-int47982607	ProperStrand	9	chr11	88587271	88587371	lincRNA	C030037D09Rik	intron	ENSMUSG00000087574	NonProperStrand	108	6	-inf
chr16	50196617	50196678	protein_coding	Bbx	utr3	ENSMUSG00000022641	ProperStrand	76	chr9	42938115	42938149	protein_coding	Pou2f3	intron	ENSMUSG00000032015	ProperStrand	43	1	-12.2193
chrX	160123501	160123547	LINE	Lx3A	L1	chrXLx3A160123320	ProperStrand	2	chr17	39847677	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	106840402	106840512	SINE	B3	B2	chr11B3106840371	NonProperStrand	1	chr12	102748180	102748200	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-inf
chr6	83910795	83910875	protein_coding	Zfml	intron	ENSMUSG00000030016	ProperStrand	53	chr5	113662467	113662485	protein_coding	Tmem211	intron	ENSMUSG00000066964	NonProperStrand	2	1	-19.3930
chr14	105156270	105156370	LINE	L1MB7	L1	chr14L1MB7105156241	NonProperStrand	1	chr14	105156477	105156567	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n105156449	NonProperStrand	1	1	-inf
chr14	18294205	18294268	LTR	MERVL_2A-int	ERVL	chr14MERVL_2A-int18293728	NonProperStrand	3	chr6	90801237	90801332	LTR	MTD	MaLR	chr6MTD90801241	NonProperStrand	1	1	-inf
chr11	69636152	69636252	SINE	B1_Mur4	Alu	chr11B1_Mur469636116	NonProperStrand	4	chr11	69636049	69636139	SINE	ID_B1	B4	chr11ID_B169635967	NonProperStrand	4	4	-inf
chr7	112800045	112800187	protein_coding	Dnhd1	exon	ENSMUSG00000030882	ProperStrand	238	chr7	112799907	112800019	protein_coding	Fxc1	intron	ENSMUSG00000089847	ProperStrand	81	2	-13.7611
chrX	20663025	20663113	protein_coding	Zfp300	intron	ENSMUSG00000031079	NonProperStrand	18	chr2	23197073	23197114	protein_coding	Nxph2	intron	ENSMUSG00000069132	ProperStrand	13	1	-17.6266
chr17	39847438	39848057	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	71590188	71590856	LTR	RLTR31A_Mm	ERVK	chr1RLTR31A_Mm71590347	NonProperStrand	7	2	-4.7560
chr9	96699997	96700097	LTR	RMER17C-int	ERVK	chr9RMER17C-int96699849	NonProperStrand	2	chr9	96700131	96700221	LTR	RMER17C	ERVK	chr9RMER17C96700112	NonProperStrand	2	2	-inf
chr5	115489456	115489512	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr10	63023801	63023867	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-8.0549
chr1	171503046	171503163	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr17	39846428	39846820	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	5	-3.4858
chr11	81125788	81125844	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	161	chr4	106588029	106588075	protein_coding	Ssbp3	intron	ENSMUSG00000061887	ProperStrand	60	1	-10.0419
chr14	50809669	50809716	LINE	L1_Rod	L1	chr14L1_Rod50809600	NonProperStrand	4	chr11	95996189	95996246	protein_coding	Ttll6	utr5	ENSMUSG00000038756	NonProperStrand	44	2	-inf
chr15	78453122	78453180	SINE	B3	B2	chr15B378453116	ProperStrand	1	chr15	78444989	78445039	protein_coding	Cyth4	intron	ENSMUSG00000018008	ProperStrand	28	1	-inf
chr17	39847844	39847882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	87407013	87407103	LTR	ORR1B1	MaLR	chr1ORR1B187406743	NonProperStrand	4	1	-3.7035
chr17	39848250	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	77030170	77030188	protein_coding	2310046A06Rik	intron	ENSMUSG00000032355	NonProperStrand	8	1	-5.1688
chr17	39847914	39847991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	141128281	141128350	SINE	B1F2	Alu	chr4B1F2141128188	ProperStrand	1	1	-inf
chr11	103386300	103386390	LTR	MTE2a-int	MaLR	chr11MTE2a-int103386157	ProperStrand	1	chr5	36601665	36601765	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-inf
chr10	30584612	30584665	LINE	L1Md_F3	L1	chr10L1Md_F330579111	ProperStrand	1	chr17	39843765	39843827	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr6	66990224	66990281	lincRNA	E230016M11Rik	intron	ENSMUSG00000087231	ProperStrand	10	chr9	45386989	45387085	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	1	-13.5641
chr1	110132697	110132715	LTR	MurERV4_19-int	ERVK	chr1MurERV4_19-int110131558	NonProperStrand	5	chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.2290
chr3	90475843	90475874	LINE	Lx9	L1	chr3Lx990474879	ProperStrand	8	chr17	39848352	39848387	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.1688
chr17	39847277	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	12462748	12462765	SINE	PB1D10	Alu	chr19PB1D1012462715	ProperStrand	1	1	-inf
chr1	52601745	52601835	LTR	RLTR25B	ERVK	chr1RLTR25B52601533	NonProperStrand	1	chr1	73954588	73954688	SINE	ID_B1	B4	chr1ID_B173954616	NonProperStrand	1	1	-inf
chr12	20197115	20197238	SINE	B1_Mus1	Alu	chr12B1_Mus120197108	ProperStrand	6	chr12	20196994	20197111	SINE	B3	B2	chr12B320197007	ProperStrand	7	6	-inf
chr8	87429477	87429567	SINE	B1_Mur1	Alu	chr8B1_Mur187429448	NonProperStrand	1	chr8	87429834	87429934	SINE	B1_Mur4	Alu	chr8B1_Mur487429799	NonProperStrand	1	1	-inf
chr7	134785317	134785357	SINE	B3	B2	chr7B3134785215	ProperStrand	1	chr7	134784135	134784218	SINE	RSINE1	B4	chr7RSINE1134784050	ProperStrand	1	1	-inf
chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr14	27402341	27408444	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	2	-7.3809
chr6	91101281	91101371	LTR	ORR1A2	MaLR	chr6ORR1A291101065	ProperStrand	10	chr6	91089904	91098638	SINE	RSINE1	B4	chr6RSINE191098578	NonProperStrand	8	8	-inf
chr13	29963243	29963292	LTR	MTD	MaLR	chr13MTD29963209	NonProperStrand	3	chr19	24096615	24096692	protein_coding	Fam189a2	intron	ENSMUSG00000071604	ProperStrand	34	1	-19.2479
chr3	123507934	123507977	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr7	4146914	4147012	LTR	IAPEz-int	ERVK	chr7IAPEz-int4144938	NonProperStrand	67	1	-12.2504
chr8	125553761	125553851	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	chr12	103414807	103414907	protein_coding	Slc24a4	intron	ENSMUSG00000041771	NonProperStrand	43	1	-8.7105
chr17	39842996	39843063	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr18	36578690	36578736	protein_coding	Pfdn1	intron	ENSMUSG00000024346	NonProperStrand	30	1	-6.7565
chr12	14650083	14650183	LINE	L1Md_A	L1	chr12L1Md_A14649825	ProperStrand	1	chr12	14650305	14650395	LINE	L1Md_T	L1	chr12L1Md_T14650187	NonProperStrand	1	1	-inf
chr2	75663636	75663687	Simple_repeat	(TTTTA)n	Simple_repeat	chr2(TTTTA)n75663637	ProperStrand	11	chr9	123461883	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr3	27141605	27141676	protein_coding	Nceh1	utr3	ENSMUSG00000027698	NonProperStrand	62	chr4	34957291	34957314	protein_coding	Mob3b	intron	ENSMUSG00000073910	ProperStrand	86	1	-11.2327
chr14	99098804	99099466	LINE	L1M5	L1	chr14L1M599098797	NonProperStrand	1	chr17	39846932	39847019	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	133087448	133087548	SINE	B1F1	Alu	chr4B1F1133087407	NonProperStrand	1	chr4	133087630	133087720	SINE	B3	B2	chr4B3133087529	NonProperStrand	1	1	-inf
chr17	39847895	39848021	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	129687592	129687609	LTR	RMER15	ERVL	chr2RMER15129687173	ProperStrand	1	1	-inf
chrX	20671400	20671448	LTR	ORR1A1-int	MaLR	chrXORR1A1-int20670687	NonProperStrand	17	chr9	59678747	59678829	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-8.8247
chr9	31189418	31189471	SINE	B1F	Alu	chr9B1F31189386	NonProperStrand	2	chr1	64737337	64737444	protein_coding	Ccnyl1	intron	ENSMUSG00000070871	NonProperStrand	20	2	-inf
chr13	21740288	21740401	LINE	L1_Mur2	L1	chr13L1_Mur221739867	ProperStrand	2	chr17	39846707	39846748	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr9	123461964	123462041	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chrX	152017086	152036242	protein_coding	Ptchd1	intron	ENSMUSG00000041552	NonProperStrand	20	2	-5.3310
chr3	41584107	41584167	LINE	L1Md_F2	L1	chr3L1Md_F241581499	NonProperStrand	15	chr9	59668940	59668991	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-9.0820
chr2	103768445	103768868	LINE	Lx8	L1	chr2Lx8103768382	ProperStrand	2	chr2	103766789	103768431	LTR	MLT1D	MaLR	chr2MLT1D103766723	ProperStrand	4	1	-22.1285
chr14	52074217	52074247	protein_coding	Vmn2r89	intron	ENSMUSG00000070448	ProperStrand	1	chr8	73223771	73223851	protein_coding	Gm11175	exon	ENSMUSG00000080058	ProperStrand	1	1	-inf
chr3	105030947	105030996	SINE	PB1D10	Alu	chr3PB1D10105030955	ProperStrand	1	chr18	60777838	60778454	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	1	-inf
chr4	133869500	133869544	SINE	B2_Mm1a	B2	chr4B2_Mm1a133869491	NonProperStrand	3	chr4	133871888	133871973	protein_coding	Trim63	intron	ENSMUSG00000028834	NonProperStrand	16	2	-inf
chr11	6419526	6419559	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	chr1	77472025	77472105	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	1	-8.4187
chr9	100496300	100496320	DNA	Charlie2b	MER1_type	chr9Charlie2b100496155	NonProperStrand	1	chr9	100495837	100495933	LTR	ORR1B1	MaLR	chr9ORR1B1100495669	NonProperStrand	1	1	-inf
chr3	101439716	101439764	LTR	MLT1A0	MaLR	chr3MLT1A0101439651	NonProperStrand	1	chr12	105031293	105031351	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	1	-inf
chr2	121732217	121732274	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	chr11	88216713	88216779	protein_coding	Msi2	intron	ENSMUSG00000069769	NonProperStrand	17	1	-14.0561
chr10	23785220	23785585	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr11	107181558	107181587	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-6.7821
chr5	115873929	115874019	LINE	L1M4	L1	chr5L1M4115873948	NonProperStrand	1	chr5	115874065	115874165	SINE	B1_Mus2	Alu	chr5B1_Mus2115874085	NonProperStrand	1	1	-inf
chr6	103829734	103829753	LINE	Lx7	L1	chr6Lx7103829612	NonProperStrand	1	chr4	43492783	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-inf
chr4	132309463	132309525	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr2	119816698	119816771	protein_coding	Mapkbp1	intron	ENSMUSG00000033902	ProperStrand	29	1	-11.1898
chr11	50291167	50291267	LINE	L1MB8	L1	chr11L1MB850291084	NonProperStrand	2	chr11	50291269	50291359	SINE	B4	B4	chr11B450291270	NonProperStrand	2	2	-inf
chr13	109338296	109338348	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr16	35594277	35594358	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	1	-5.7744
chr14	45265902	45265971	LTR	RLTR11B	ERVK	chr14RLTR11B45265777	NonProperStrand	1	chr14	45269564	45269595	protein_coding	Gm8257	utr3	ENSMUSG00000079265	ProperStrand	33	1	-inf
chr17	39843480	39843522	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	67066095	67066149	protein_coding	Rsrc1	intron	ENSMUSG00000034544	ProperStrand	37	1	-3.4296
chr2	159080502	159080592	LTR	MT2A	ERVL	chr2MT2A159080150	NonProperStrand	3	chr12	4226500	4226600	protein_coding	Cenpo	intron	ENSMUSG00000020652	ProperStrand	35	3	-inf
chr3	108322585	108322627	protein_coding	5330417C22Rik	intron	ENSMUSG00000040412	NonProperStrand	43	chr7	4483130	4483369	protein_coding	6030429G01Rik	intron	ENSMUSG00000055809	ProperStrand	41	1	-13.4657
chr9	84775386	84775486	LTR	ORR1D1-int	MaLR	chr9ORR1D1-int84775359	NonProperStrand	1	chr9	84775190	84775280	LTR	ORR1D1	MaLR	chr9ORR1D184774992	NonProperStrand	1	1	-inf
chr17	39848459	39848549	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	155064062	155064239	protein_coding	Dynlrb1	intron	ENSMUSG00000047459	NonProperStrand	14	1	-4.3119
chr1	178463816	178463914	LTR	MT2C_Mm	ERVL	chr1MT2C_Mm178463615	NonProperStrand	3	chr6	88036313	88036340	protein_coding	Rpn1	intron	ENSMUSG00000030062	ProperStrand	10	1	-20.3377
chr5	100192070	100192170	LTR	ORR1E	MaLR	chr5ORR1E100192010	NonProperStrand	1	chr5	100192343	100192433	LTR	RMER19A	ERVK	chr5RMER19A100192150	ProperStrand	1	1	-inf
chr6	142765630	142765662	processed_transcript	Gm7457	.	ENSMUSG00000072683	ProperStrand	18	chr15	100874078	100874185	protein_coding	Scn8a	utr3	ENSMUSG00000023033	ProperStrand	29	1	-15.9264
chr15	50771831	50771881	LINE	L2	L2	chr15L250771718	NonProperStrand	1	chr4	48615025	48615118	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	114	1	-inf
chr9	47687967	47688046	SINE	MIRb	MIR	chr9MIRb47687976	ProperStrand	3	chr4	136547906	136547969	protein_coding	Zbtb40	intron	ENSMUSG00000060862	NonProperStrand	45	2	-inf
chr1	172205579	172205651	LINE	Lx8	L1	chr1Lx8172205014	ProperStrand	1	chr13	8767093	8767126	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	1	-inf
chr6	125229579	125229617	protein_coding	Tuba3a	intron	ENSMUSG00000067702	NonProperStrand	7	chr4	34952498	34952526	protein_coding	Mob3b	intron	ENSMUSG00000073910	NonProperStrand	4	1	-inf
chr19	33117126	33117182	LINE	L1MA5A	L1	chr19L1MA5A33115732	NonProperStrand	10	chr9	123461882	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr9	55519611	55519711	protein_coding	Scaper	intron	ENSMUSG00000034007	ProperStrand	71	chr9	53498709	53498799	protein_coding	Rab39	intron	ENSMUSG00000055069	NonProperStrand	5	1	-16.9025
chr1	55083779	55084606	SINE	B1_Mm	Alu	chr1B1_Mm55084487	NonProperStrand	5	chr1	55084601	55084704	SINE	B1_Mus1	Alu	chr1B1_Mus155084624	NonProperStrand	3	3	-inf
chr5	88604609	88604731	LINE	L1_Mur1	L1	chr5L1_Mur188604596	ProperStrand	1	chr6	113901012	113901030	protein_coding	Atp2b2	intron	ENSMUSG00000030302	ProperStrand	88	1	-inf
chr8	118645623	118645723	DNA	URR1B	MER1_type	chr8URR1B118645510	NonProperStrand	1	chr8	118645393	118645483	LTR	MTE2b	MaLR	chr8MTE2b118645229	NonProperStrand	1	1	-inf
chr17	39846655	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	50597950	50598007	SINE	B1_Mur1	Alu	chr10B1_Mur150597954	ProperStrand	1	1	-inf
chr11	58144969	58144996	protein_coding	Sh3bp5l	utr5	ENSMUSG00000013646	NonProperStrand	9	chr4	53860736	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-13.3150
chr15	94580849	94580953	protein_coding	Tmem117	intron	ENSMUSG00000063296	NonProperStrand	37	chr5	66469913	66469956	protein_coding	Rbm47	intron	ENSMUSG00000070780	ProperStrand	141	1	-11.2828
chr3	72414458	72414548	LINE	L1_Mm	L1	chr3L1_Mm72414451	NonProperStrand	1	chr3	72414308	72414408	LINE	Lx6	L1	chr3Lx672413864	ProperStrand	1	1	-inf
chr9	120957623	120957815	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	chr16	28925416	28925463	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	1	-7.7299
chr12	91672167	91672267	LINE	L1MA5	L1	chr12L1MA591671852	NonProperStrand	1	chr12	91668582	91668626	LINE	L1Md_F2	L1	chr12L1Md_F291668169	NonProperStrand	2	1	-inf
chr10	4000116	4000170	LINE	L1VL4	L1	chr10L1VL44000002	NonProperStrand	1	chrX	139343126	139343219	protein_coding	Ammecr1	intron	ENSMUSG00000042225	NonProperStrand	24	1	-inf
chr11	54679416	54683934	protein_coding	Hint1	utr3	ENSMUSG00000020267	ProperStrand	1	chr12	79509327	79509416	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr10	4001947	4002037	LINE	L1VL1	L1	chr10L1VL14001967	ProperStrand	1	chr10	4001757	4001857	LINE	L1VL4	L1	chr10L1VL44001730	ProperStrand	1	1	-inf
chr10	23785753	23785820	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr1	136364889	136364952	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-8.4161
chr13	58127675	58191773	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	chr13	44869602	44869890	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-3.9377
chr17	39846955	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	26903310	26903327	protein_coding	Gm2104	intron	ENSMUSG00000091976	ProperStrand	1	1	-inf
chr1	139049569	139049617	LINE	L1Md_A	L1	chr1L1Md_A139046222	NonProperStrand	2	chr5	33483491	33483587	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	1	-15.0802
chr3	5837633	5837733	LINE	Lx7	L1	chr3Lx75837422	ProperStrand	1	chr3	5837741	5837831	LINE	Lx7	L1	chr3Lx75837743	ProperStrand	1	1	-inf
chr17	39846411	39846459	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	101778611	101779294	LTR	MLT1C	MaLR	chr7MLT1C101779052	NonProperStrand	1	1	-inf
chr1	106051324	106051400	LINE	Lx4B	L1	chr1Lx4B106049992	ProperStrand	1	chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	1	-inf
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	119585706	119585769	protein_coding	Ltk	intron	ENSMUSG00000027297	NonProperStrand	5	1	-10.1672
chr3	60550611	60550681	LINE	L1_Mur2	L1	chr3L1_Mur260550557	ProperStrand	1	chr13	98894527	98894588	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	1	-inf
chr8	111832625	111832736	LINE	L2	L2	chr8L2111832603	NonProperStrand	1	chr6	52611610	52611641	SINE	B3A	B2	chr6B3A52611480	ProperStrand	1	1	-inf
chr5	136552682	136552708	SINE	ID_B1	B4	chr5ID_B1136552549	NonProperStrand	1	chr5	136537736	136537821	protein_coding	2310043J07Rik	intron	ENSMUSG00000006143	NonProperStrand	16	1	-inf
chr17	39843748	39843817	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr18	60762183	60762225	protein_coding	Synpo	exon	ENSMUSG00000043079	ProperStrand	54	2	-5.4546
chr17	39846721	39846833	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	48856809	48857006	protein_coding	9930111J21Rik2	intron	ENSMUSG00000069892	ProperStrand	9	2	-3.9140
chr11	98153473	98153549	LTR	LTRIS_Mus	ERV1	chr11LTRIS_Mus98153272	ProperStrand	1	chr1	136364891	136364944	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-inf
chr4	72167985	72168067	LINE	Lx3_Mus	L1	chr4Lx3_Mus72167090	NonProperStrand	1	chr17	34952012	34952075	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	1	-inf
chr10	81373584	81373674	LINE	L1Md_A	L1	chr10L1Md_A81373394	ProperStrand	4	chr10	81373487	81373587	protein_coding	Zfp781	intron	ENSMUSG00000062540	ProperStrand	33	4	-inf
chrX	7867558	7867575	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	9	chr17	39843505	39843571	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-6.2068
chr18	74055181	74055236	LINE	L1M4	L1	chr18L1M474054883	ProperStrand	1	chr7	79470395	79470437	LINE	L1MD3	L1	chr7L1MD379470301	ProperStrand	1	1	-inf
chr17	25102154	25102192	protein_coding	Cramp1l	intron	ENSMUSG00000038002	NonProperStrand	32	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.2202
chr17	39847847	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	58981865	58984798	protein_coding	Ptgr1	intron	ENSMUSG00000028378	ProperStrand	5	1	-3.2379
chr1	192745648	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr5	43736726	43736758	LTR	IAPEz-int	ERVK	chr5IAPEz-int43736570	NonProperStrand	1	1	-inf
chr15	56074062	56074152	LINE	L1_Rod	L1	chr15L1_Rod56073337	ProperStrand	1	chr19	33606707	33606807	protein_coding	Lipo1	intron	ENSMUSG00000024766	ProperStrand	8	1	-inf
chr8	106922979	106923047	LINE	L1_Mus1	L1	chr8L1_Mus1106922990	NonProperStrand	1	chr17	39847611	39847699	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846462	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	117360024	117360128	LTR	RMER15	ERVL	chr5RMER15117359974	ProperStrand	4	2	-6.6967
chr9	123461822	123461860	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	120620172	120620188	protein_coding	Ttbk2	intron	ENSMUSG00000090100	ProperStrand	13	1	-3.8693
chr7	118176875	118176909	protein_coding	Ctr9	intron	ENSMUSG00000005609	NonProperStrand	17	chr12	8551177	8551252	protein_coding	Slc7a15	intron	ENSMUSG00000020600	NonProperStrand	3	1	-20.3649
chr13	9834436	9834515	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr9	70600921	70600990	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-8.3186
chr15	98845688	98845796	LTR	MTC-int	MaLR	chr15MTC-int98845200	NonProperStrand	3	chr17	17303527	17303575	LTR	RLTR13B1	ERVK	chr17RLTR13B117303233	ProperStrand	3	2	-20.2273
chr11	51993770	51993821	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	chr11	68904457	68904518	protein_coding	Vamp2	utr3	ENSMUSG00000020894	ProperStrand	37	1	-11.0547
chr1	161035870	161035912	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr9	40804041	40804082	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-8.1059
chr15	89240988	89241089	LINE	L2b	L2	chr15L2b89240991	ProperStrand	2	chr15	89240604	89240694	protein_coding	Syce3	utr5	ENSMUSG00000078938	NonProperStrand	9	2	-inf
chr10	21141854	21141872	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n21141746	NonProperStrand	1	chr1	132025303	132025423	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr15	12842466	12842492	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	1	-11.8450
chr4	139412657	139413421	DNA	MER53	hAT	chr4MER53139412626	ProperStrand	6	chr4	139410783	139412647	SINE	MIR	MIR	chr4MIR139410752	ProperStrand	4	3	-inf
chr16	49490672	49490690	LINE	Lx9	L1	chr16Lx949490663	NonProperStrand	1	chr9	123462019	123462077	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	97581726	97581823	LINE	L1_Rod	L1	chr7L1_Rod97581347	NonProperStrand	1	chr17	39847014	39847049	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	102003602	102003620	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	NonProperStrand	4	1	-3.7035
chr15	100781346	100781388	LTR	ORR1E	MaLR	chr15ORR1E100781137	NonProperStrand	1	chr6	87844726	87844801	protein_coding-noncoding	Copg	utr5	ENSMUSG00000030058	NonProperStrand	26	1	-inf
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.3775
chr5	140084527	140084633	Simple_repeat	(TC)n	Simple_repeat	chr5(TC)n140084441	NonProperStrand	3	chr7	139875660	139875677	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-15.2131
chr1	127431204	127431301	LTR	MTA_Mm	MaLR	chr1MTA_Mm127431141	ProperStrand	1	chr17	21871691	21871726	protein_coding	Zfp229	intron	ENSMUSG00000061544	NonProperStrand	9	1	-inf
chr2	22744838	22744902	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	50420129	50420165	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-4.7842
chr17	39848597	39848674	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr18	24484769	24484839	LTR	ORR1E	MaLR	chr18ORR1E24484774	ProperStrand	1	1	-inf
chr17	39847835	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	81644991	81645010	protein_coding	Tef	intron	ENSMUSG00000022389	NonProperStrand	3	1	-4.3512
chr17	39847623	39847688	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	134252473	134252562	LTR	ORR1A2	MaLR	chr6ORR1A2134252217	NonProperStrand	1	1	-inf
chr4	84575323	84575392	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	chr3	84823467	84823546	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-9.4586
chr17	56614031	56614205	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	chr7	133112445	133112465	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.2858
chr5	114757080	114757121	SINE	RSINE1	B4	chr5RSINE1114757004	NonProperStrand	1	chr13	97190572	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr5	146261301	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr6	38601931	38602020	SINE	B3	B2	chr6B338601836	NonProperStrand	1	1	-inf
chr18	80144782	80144882	LINE	Lx8	L1	chr18Lx880144412	NonProperStrand	3	chr18	80144913	80145003	LINE	Lx8	L1	chr18Lx880144802	NonProperStrand	3	3	-inf
chr17	33669076	33670120	protein_coding	Adamts10	intron	ENSMUSG00000024299	NonProperStrand	24	chr13	97190573	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.9352
chr13	100660241	100660274	LTR	MTE2a	MaLR	chr13MTE2a100660158	ProperStrand	1	chr2	5379265	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr2	115689933	115690002	protein_coding	Meis2	utr3	ENSMUSG00000027210	ProperStrand	9	chr16	57391592	57391670	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	20	1	-18.3375
chr16	18320064	18320138	protein_coding	D16H22S680E	intron	ENSMUSG00000013539	ProperStrand	15	chr9	123461982	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chrX	82692792	82692882	LINE	Lx	L1	chrXLx82692812	ProperStrand	1	chrX	81264135	81264235	protein_coding	Dmd	intron	ENSMUSG00000045103	NonProperStrand	39	1	-inf
chr16	20287933	20297636	protein_coding-noncoding	Parl	utr3	ENSMUSG00000033918	ProperStrand	7	chr16	20289312	20297730	protein_coding	Parl	intron	ENSMUSG00000033918	ProperStrand	33	5	-inf
chr11	120955384	120955804	LINE	Lx7	L1	chr11Lx7120955299	ProperStrand	7	chr11	120955852	120956364	SINE	B1_Mus1	Alu	chr11B1_Mus1120955843	ProperStrand	4	4	-inf
chr5	93330954	93330976	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	chr2	91575081	91575135	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-9.3299
chr17	39847476	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	44139492	44139537	protein_coding	Dpagt1	intron	ENSMUSG00000032123	ProperStrand	4	1	-3.7035
chr8	111297442	111297500	protein_coding	Zfhx3	intron	ENSMUSG00000038872	NonProperStrand	108	chr8	124030451	124030518	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-5.7735
chr7	15938762	15938870	LTR	LTRIS_Mus	ERV1	chr7LTRIS_Mus15938504	ProperStrand	14	chr7	12930824	12930858	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	1	-14.4103
chr6	3201478	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	113546623	113548395	protein_coding	Fancd2	utr3	ENSMUSG00000034023	ProperStrand	35	1	-3.8833
chr2	75219133	75219233	DNA	MER20B	MER1_type	chr2MER20B75219137	ProperStrand	1	chr2	75218944	75219034	LINE	L1MA4	L1	chr2L1MA475218829	NonProperStrand	1	1	-inf
chr1	178464114	178464214	LTR	MLT1D	MaLR	chr1MLT1D178464086	ProperStrand	2	chr1	178464001	178464091	LTR	MT2C_Mm	ERVL	chr1MT2C_Mm178463615	NonProperStrand	3	2	-inf
chr15	80913686	80913759	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	chr7	122618964	122619024	protein_coding	Sox6	utr3	ENSMUSG00000051910	NonProperStrand	155	1	-8.1681
chr10	68905953	68906053	SINE	B2_Mm1t	B2	chr10B2_Mm1t68905859	ProperStrand	1	chr10	68906119	68906209	SINE	B3	B2	chr10B368906068	ProperStrand	1	1	-inf
chr3	87086572	87088174	LINE	L1Md_F2	L1	chr3L1Md_F287085258	NonProperStrand	11	chr17	32198264	32198416	protein_coding	Rrp1b	utr3	ENSMUSG00000058392	NonProperStrand	36	1	-16.5570
chr5	61454542	61454560	LINE	Lx5	L1	chr5Lx561454222	NonProperStrand	1	chr17	39846822	39846931	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	71600293	71600334	LTR	MTC	MaLR	chr1MTC71600075	NonProperStrand	3	chr1	15818965	15818996	protein_coding	Terf1	intron	ENSMUSG00000025925	ProperStrand	66	1	-18.0910
chr16	9153145	9153245	LTR	RLTR12B	ERVK	chr16RLTR12B9152976	ProperStrand	1	chr12	27297102	27297192	Simple_repeat	(TCTCCC)n	Simple_repeat	chr12(TCTCCC)n27297036	ProperStrand	1	1	-inf
chr9	123461921	123461938	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr18	56752103	56752191	protein_coding	1700065I17Rik	utr3	ENSMUSG00000032900	ProperStrand	18	1	-3.2529
chr6	38606187	38606277	LTR	MTEa	MaLR	chr6MTEa38606193	NonProperStrand	5	chr18	36740238	36740338	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	1	-17.2064
chr17	39846470	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	129306346	129307678	protein_coding	Txlna	exon	ENSMUSG00000053841	ProperStrand	9	2	-3.9140
chr10	18333758	18333849	protein_coding	D10Bwg1379e	intron	ENSMUSG00000019852	NonProperStrand	72	chr10	41533995	41534054	protein_coding	Sesn1	intron	ENSMUSG00000038332	ProperStrand	16	1	-14.3459
chr17	39846419	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	12764256	12764373	LTR	RMER16	ERVK	chr19RMER1612764067	ProperStrand	1	1	-inf
chr10	80277636	80280933	SINE	B1_Mus1	Alu	chr10B1_Mus180278149	NonProperStrand	4	chr10	80274823	80277618	protein_coding	Jsrp1	utr5	ENSMUSG00000020216	NonProperStrand	14	4	-inf
chr3	121539669	121539759	LTR	ERVL-B4-int	ERVL	chr3ERVL-B4-int121539581	ProperStrand	1	chr3	121539788	121539888	LTR	MTD	MaLR	chr3MTD121539795	ProperStrand	1	1	-inf
chr5	146261024	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	7571246	7571308	LTR	ORR1C2	MaLR	chrXORR1C27571161	NonProperStrand	1	1	-inf
chr18	56739892	56739959	protein_coding	Phax	exon	ENSMUSG00000008301	ProperStrand	96	chr13	44869573	44869639	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-6.1185
chr8	91646659	91646749	LINE	L1_Mur3	L1	chr8L1_Mur391646519	ProperStrand	5	chr8	91646784	91646884	SINE	B1_Mus1	Alu	chr8B1_Mus191646784	ProperStrand	5	5	-inf
chr2	177833599	177833699	LTR	MTEa	MaLR	chr2MTEa177833544	ProperStrand	2	chr2	177833723	177833813	LTR	RMER15	ERVL	chr2RMER15177833741	ProperStrand	1	1	-inf
chr17	39847610	39847700	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	127629333	127629433	LTR	ORR1C1	MaLR	chr5ORR1C1127629275	ProperStrand	1	1	-inf
chr4	121204081	121204129	LINE	L1Md_F3	L1	chr4L1Md_F3121203806	ProperStrand	3	chr17	39846372	39846397	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr7	120722295	120722349	SINE	B4	B4	chr7B4120722289	NonProperStrand	1	chr7	120722255	120722296	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n120722259	ProperStrand	1	1	-inf
chr14	66274200	66274253	LTR	MTEb	MaLR	chr14MTEb66274177	NonProperStrand	1	chr2	32963383	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-inf
chr11	13757873	13757963	LINE	L1_Mm	L1	chr11L1_Mm13757041	NonProperStrand	1	chr1	27202937	27203037	protein_coding	Gm11161	intron	ENSMUSG00000079640	NonProperStrand	1	1	-inf
chr9	30737502	30737592	LINE	L1Md_F2	L1	chr9L1Md_F230737433	ProperStrand	1	chr9	30737275	30737375	SINE	MIRc	MIR	chr9MIRc30737286	ProperStrand	1	1	-inf
chr5	65692989	65693079	protein_coding	Rfc1	intron	ENSMUSG00000029191	ProperStrand	34	chr6	115841436	115841536	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	2	-18.8924
chr8	83904295	83904351	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr13	54632913	54632975	protein_coding	4732471D19Rik	intron	ENSMUSG00000043183	ProperStrand	18	1	-8.9388
chr1	84823659	84823745	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr2	20620786	20620848	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-7.1991
chr1	7802055	7802146	LINE	L1Md_F2	L1	chr1L1Md_F27800618	ProperStrand	1	chr1	7360617	7360717	lincRNA	Gm16899	intron	ENSMUSG00000086461	NonProperStrand	3	1	-inf
chr5	118758074	118758091	SINE	RSINE1	B4	chr5RSINE1118758009	NonProperStrand	3	chr6	30504407	30504517	protein_coding	Cpa2	intron	ENSMUSG00000071553	NonProperStrand	13	1	-inf
chr16	34549626	34549647	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	chr8	124028956	124028987	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-4.1375
chr6	88000198	88000236	SINE	B1_Mus1	Alu	chr6B1_Mus188000173	ProperStrand	2	chr16	35981717	35981765	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	1	-17.5337
chr7	68019435	68019507	LINE	Lx6	L1	chr7Lx668019421	ProperStrand	1	chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	40258543	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	146299473	146299492	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	NonProperStrand	19	1	-7.6479
chr4	145044121	145044221	LINE	L1_Mur2	L1	chr4L1_Mur2145044027	ProperStrand	5	chr4	145044228	145044318	LTR	MYSERV6-int	ERVK	chr4MYSERV6-int145044210	ProperStrand	7	5	-inf
chr13	16193124	16193224	LTR	MuRRS4-int	ERV1	chr13MuRRS4-int16192793	ProperStrand	1	chr13	16193232	16193322	LTR	MuRRS4-int	ERV1	chr13MuRRS4-int16193235	ProperStrand	1	1	-inf
chr10	86837837	86837950	LINE	Lx	L1	chr10Lx86837624	ProperStrand	1	chr17	39847485	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	151649329	151649365	LINE	L1MC4a	L1	chr5L1MC4a151649251	ProperStrand	1	chr17	39846823	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	100434735	100436195	SINE	B1_Mur4	Alu	chr11B1_Mur4100434633	NonProperStrand	2	chr11	100433025	100434739	protein_coding	Ttc25	exon	ENSMUSG00000006784	NonProperStrand	9	2	-inf
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr9	66091092	66091185	protein_coding	Dapk2	intron	ENSMUSG00000032380	NonProperStrand	28	1	-13.9350
chr4	45502062	45502258	protein_coding-noncoding	Shb	utr3	ENSMUSG00000044813	ProperStrand	3	chr4	45502254	45502344	protein_coding	Shb	intron	ENSMUSG00000044813	ProperStrand	384	3	-inf
chr5	33521952	33522067	LTR	RMER19B	ERVK	chr5RMER19B33521324	ProperStrand	29	chr5	33522075	33522201	Simple_repeat	(CATATA)n	Simple_repeat	chr5(CATATA)n33522080	NonProperStrand	5	4	-inf
chr3	102359258	102359357	LINE	L1MC	L1	chr3L1MC102359214	ProperStrand	1	chr3	102359543	102359633	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n102359504	NonProperStrand	1	1	-inf
chr4	149345493	149345593	LINE	L1_Mur3	L1	chr4L1_Mur3149345485	NonProperStrand	3	chr4	149345630	149345720	LTR	RLTR18B	ERVK	chr4RLTR18B149345602	NonProperStrand	3	3	-inf
chr11	63984146	63984236	lincRNA	Gm12290	intron	ENSMUSG00000087622	NonProperStrand	12	chr2	29086965	29087064	protein_coding	Ntng2	intron	ENSMUSG00000035513	NonProperStrand	31	1	-16.6683
chr1	127806401	127806478	protein_coding	Lypd1	intron	ENSMUSG00000026344	NonProperStrand	85	chr1	118422017	118422079	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	1	-9.7704
chr17	39846273	39846356	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	15489747	15489788	SINE	ID_B1	B4	chr17ID_B115489679	ProperStrand	2	2	-inf
chr13	97433358	97433456	protein_coding	Hmgcr	intron	ENSMUSG00000021670	ProperStrand	4	chr9	123461913	123461970	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr17	39848142	39848164	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	28221994	28222026	SINE	B3	B2	chr14B328221958	ProperStrand	2	2	-inf
chr9	15309898	15309988	SINE	B3A	B2	chr9B3A15309905	NonProperStrand	1	chr9	15310003	15311543	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-inf
chr10	78453230	78453313	LINE	Lx2B	L1	chr10Lx2B78453160	ProperStrand	1	chr1	118449086	118449162	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	1	-inf
chr1	126126707	126126797	SINE	B3A	B2	chr1B3A126126649	ProperStrand	1	chr1	126126557	126126657	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n126126541	NonProperStrand	1	1	-inf
chr12	80224256	80224364	LTR	MT2_Mm	ERVL	chr12MT2_Mm80224176	ProperStrand	4	chr17	39847010	39847059	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr4	10757131	10757221	LTR	MTA_Mm	MaLR	chr4MTA_Mm10756875	ProperStrand	1	chr4	10756687	10756787	SINE	MIRc	MIR	chr4MIRc10756683	ProperStrand	1	1	-inf
chrX	87238369	87238404	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr19	58102434	58102527	protein_coding	Atrnl1	intron	ENSMUSG00000054843	ProperStrand	65	1	-9.3219
chr6	72315655	72315743	SINE	B1_Mur2	Alu	chr6B1_Mur272315615	NonProperStrand	3	chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-15.8051
chr12	20722736	20722826	LTR	RLTR6-int	ERV1	chr12RLTR6-int20715201	NonProperStrand	1	chr12	20722957	20723057	LTR	RLTR6_Mm	ERV1	chr12RLTR6_Mm20722822	NonProperStrand	1	1	-inf
chr5	63953431	63953531	LTR	MTEa	MaLR	chr5MTEa63953297	NonProperStrand	1	chr5	63953544	63953634	LTR	MTEa	MaLR	chr5MTEa63953537	NonProperStrand	1	1	-inf
chr4	98809581	98809620	Other	RMER1C	Other	chr4RMER1C98809336	NonProperStrand	1	chr4	155159889	155159927	protein_coding	Tmem88b	utr5	ENSMUSG00000073680	ProperStrand	45	1	-inf
chr7	139748993	139749093	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr7	139749177	139749267	protein_coding	Oat	utr3	ENSMUSG00000030934	ProperStrand	1	1	-inf
chrX	77643527	77646268	LINE	Lx4B	L1	chrXLx4B77644505	NonProperStrand	1	chrX	77655513	77658742	LTR	MLT1E3	MaLR	chrXMLT1E377655271	ProperStrand	1	1	-inf
chr12	65156577	65156677	LTR	MTD	MaLR	chr12MTD65156552	NonProperStrand	1	chr12	65156995	65157085	LTR	MTD	MaLR	chr12MTD65156929	NonProperStrand	1	1	-inf
chr7	28543589	28543689	LTR	LTRIS3	ERV1	chr7LTRIS328543599	ProperStrand	1	chr7	28543343	28543433	LTR	RLTR14-int	ERV1	chr7RLTR14-int28543289	ProperStrand	1	1	-inf
chr17	39847448	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	119578364	119578472	LTR	MT-int	MaLR	chr1MT-int119577950	ProperStrand	1	1	-inf
chr8	54529302	54529329	LINE	L3	CR1	chr8L354529237	NonProperStrand	3	chr17	39846464	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr15	77125134	77125190	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	chr17	80713109	80713201	protein_coding	Arhgef33	intron	ENSMUSG00000054901	NonProperStrand	28	1	-11.7923
chr17	39846586	39846651	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	25557943	25558002	protein_coding	Lcn13	intron	ENSMUSG00000062061	ProperStrand	2	1	-5.3533
chr5	148315311	148315328	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	chr9	65201725	65201752	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-10.5039
chr2	73179184	73179254	LTR	RMER19C	ERVK	chr2RMER19C73178732	ProperStrand	1	chr2	73179915	73179977	protein_coding	Gpr155	utr3	ENSMUSG00000041762	ProperStrand	10	1	-inf
chr17	45571830	45571879	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	chr6	49212291	49212390	protein_coding	Tra2a	intron	ENSMUSG00000029817	ProperStrand	51	1	-11.6498
chr10	70166792	70166851	LTR	MTC	MaLR	chr10MTC70166485	ProperStrand	2	chr17	39847809	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	24198528	24198611	protein_coding	Kctd5	intron	ENSMUSG00000016946	ProperStrand	24	chr11	29693578	29693624	protein_coding	Eml6	intron	ENSMUSG00000044072	NonProperStrand	99	2	-20.4084
chr3	145405253	145405284	LTR	RMER17C	ERVK	chr3RMER17C145405116	NonProperStrand	1	chrX	20452826	20452867	protein_coding	Syn1	intron	ENSMUSG00000037217	NonProperStrand	7	1	-inf
chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr14	11748567	11748637	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-7.4821
chr17	39846818	39846881	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	4740839	4740916	protein_coding	2210411K11Rik	exon	ENSMUSG00000030431	NonProperStrand	3	1	-4.3017
chr2	151021758	151021840	LINE	L1Md_T	L1	chr2L1Md_T151019958	ProperStrand	1	chr2	151030613	151030687	LINE	Lx8	L1	chr2Lx8151030503	ProperStrand	1	1	-inf
chrX	74237732	74237904	SINE	PB1D9	Alu	chrXPB1D974237856	NonProperStrand	1	chr9	118674951	118675011	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr3	135485649	135485704	SINE	B1_Mm	Alu	chr3B1_Mm135485599	NonProperStrand	1	chr3	135497981	135498079	protein_coding	Slc39a8	intron	ENSMUSG00000053897	ProperStrand	45	1	-inf
chr18	53918875	53918910	SINE	PB1D10	Alu	chr18PB1D1053918859	NonProperStrand	1	chr13	44869605	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	93385040	93385140	LINE	L1Md_F2	L1	chr17L1Md_F293384963	NonProperStrand	1	chr17	93384873	93384963	LTR	ORR1B2	MaLR	chr17ORR1B293384760	ProperStrand	1	1	-inf
chr7	87573649	87573749	SINE	B1_Mus2	Alu	chr7B1_Mus287573631	NonProperStrand	1	chr7	87573788	87573878	SINE	B2_Mm1a	B2	chr7B2_Mm1a87573799	ProperStrand	1	1	-inf
chr2	77192080	77192180	LINE	L1MB3	L1	chr2L1MB377191885	NonProperStrand	1	chr2	77192350	77192440	LTR	ORR1E	MaLR	chr2ORR1E77192296	ProperStrand	1	1	-inf
chr13	63930421	63930495	protein_coding	0610007P08Rik	intron	ENSMUSG00000021470	NonProperStrand	8	chr9	123462117	123462150	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr7	28893340	28893440	protein_coding	Fcgbp	intron	ENSMUSG00000047730	NonProperStrand	69	chr8	61340121	61340211	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-9.3478
chr3	158360814	158360875	LINE	L1Md_T	L1	chr3L1Md_T158360272	NonProperStrand	2	chr3	158370503	158370587	LTR	MLT1E1A-int	MaLR	chr3MLT1E1A-int158370446	ProperStrand	1	1	-inf
chr17	56386478	56386578	SINE	B1_Mur4	Alu	chr17B1_Mur456386429	ProperStrand	3	chr17	56386357	56386447	SINE	ID_B1	B4	chr17ID_B156386210	ProperStrand	4	3	-inf
chr17	39848497	39848745	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	4	-3.8802
chr5	136558445	136558535	SINE	B1_Mur4	Alu	chr5B1_Mur4136558471	NonProperStrand	3	chr5	136558319	136558419	SINE	B3	B2	chr5B3136558314	NonProperStrand	3	3	-inf
chr6	40329528	40347430	protein_coding	Agk	intron	ENSMUSG00000029916	ProperStrand	8	chr6	40347423	40352424	protein_coding	E330009J07Rik	utr3	ENSMUSG00000037172	NonProperStrand	15	1	-19.1188
chr2	5379317	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	149184710	149184726	protein_coding	Slc7a1	intron	ENSMUSG00000041313	ProperStrand	26	1	-6.1854
chr1	119695626	119695668	LINE	MusHAL1	L1	chr1MusHAL1119695335	ProperStrand	1	chr17	39847511	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	66701044	66701134	LTR	RMER12	ERVK	chr6RMER1266701014	ProperStrand	2	chr6	66701169	66701269	Low_complexity	T-rich	Low_complexity	chr6T-rich66701182	ProperStrand	2	2	-inf
chr11	109012011	109012039	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr4	133965551	133965964	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	1	-13.1430
chr3	32355626	32355685	protein_coding	Pik3ca	intron	ENSMUSG00000027665	NonProperStrand	80	chr14	21522899	21522944	protein_coding	Chchd1	intron	ENSMUSG00000063787	ProperStrand	24	1	-13.3014
chr9	123462014	123462104	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	75541654	75541754	protein_coding	Smad7	intron	ENSMUSG00000025880	NonProperStrand	11	1	-4.1956
chr3	56183307	56183324	LINE	L1Md_A	L1	chr3L1Md_A56183116	ProperStrand	2	chr19	55507339	55507419	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	1	-16.4521
chr10	4355331	4355367	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr10	42369143	42369190	protein_coding	Ostm1	intron	ENSMUSG00000038280	NonProperStrand	116	1	-8.4441
chr9	78477717	78477776	antisense	4921509A06Rik	.	ENSMUSG00000091147	ProperStrand	2	chr9	78477911	78477980	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-14.9618
chr15	14801201	14801291	LINE	Lx	L1	chr15Lx14801150	ProperStrand	1	chr15	14801879	14801979	LTR	MLT-int	MaLR	chr15MLT-int14801858	ProperStrand	1	1	-inf
chr17	39848598	39848717	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	75778418	75778441	protein_coding	Zfp623	exon	ENSMUSG00000050846	NonProperStrand	12	1	-4.6162
chrX	73675302	73675375	LINE	L1_Mur2	L1	chrXL1_Mur273675295	ProperStrand	1	chr4	132551582	132553043	protein_coding	Fgr	intron	ENSMUSG00000028874	ProperStrand	28	1	-inf
chr11	84426233	84426352	SINE	B1_Mm	Alu	chr11B1_Mm84426208	NonProperStrand	1	chr11	84430180	84430209	SINE	B2_Mm2	B2	chr11B2_Mm284430160	ProperStrand	1	1	-inf
chr11	93944262	93944321	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	chr17	29699755	29699811	protein_coding	Tbc1d22b	intron	ENSMUSG00000042203	NonProperStrand	48	1	-11.8938
chr19	24216275	24216298	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	127	chr1	153460333	153460366	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	3	-20.2955
chr3	37507400	37507461	Low_complexity	CT-rich	Low_complexity	chr3CT-rich37507406	ProperStrand	1	chr14	11845878	11845949	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-inf
chr17	39843709	39843810	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr3	103002493	103002511	pseudogene	2410024N13Rik	.	ENSMUSG00000054379	ProperStrand	1	1	-inf
chr11	117291021	117351457	Simple_repeat	(TTCTCC)n	Simple_repeat	chr11(TTCTCC)n117351333	ProperStrand	1	chr11	117290924	117290978	lincRNA	Gm11732	intron	ENSMUSG00000085336	ProperStrand	40	1	-inf
chr17	39847328	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	162157997	162158031	LTR	RLTR22_Mus	ERVK	chrXRLTR22_Mus162157546	ProperStrand	1	1	-inf
chr10	41816103	41816193	LINE	L2	L2	chr10L241816075	NonProperStrand	1	chr10	41816370	41816470	LTR	ORR1A2	MaLR	chr10ORR1A241816257	NonProperStrand	1	1	-inf
chr11	50257493	50257574	DNA	Charlie1b	MER1_type	chr11Charlie1b50257421	NonProperStrand	1	chr2	5379266	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr4	118239216	118239316	protein_coding	Wdr65	intron	ENSMUSG00000028730	ProperStrand	288	chr3	36092373	36092463	protein_coding	Qrfpr	intron	ENSMUSG00000058400	ProperStrand	6	4	-inf
chr6	116067671	116067742	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	chr2	5379271	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.5804
chr9	65201724	65201837	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr14	117644916	117644941	protein_coding	Gpc6	intron	ENSMUSG00000058571	ProperStrand	66	1	-10.8652
chr11	62337480	62337504	LTR	RMER19B	ERVK	chr11RMER19B62336849	ProperStrand	1	chr8	4243336	4243396	protein_coding	Map2k7	exon	ENSMUSG00000002948	ProperStrand	15	1	-inf
chrX	71850278	71850368	LTR	RMER3D-int	ERVK	chrXRMER3D-int71850082	ProperStrand	1	chrX	71850677	71850777	LTR	RMER3D-int	ERVK	chrXRMER3D-int71850624	ProperStrand	4	1	-inf
chr17	39846394	39846437	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	33919661	33919714	SINE	B1_Mur1	Alu	chr17B1_Mur133919587	ProperStrand	1	1	-inf
chr13	21181179	21181280	LINE	L1MA8	L1	chr13L1MA821181000	NonProperStrand	1	chr11	73083080	73083104	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-inf
chr17	39847223	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	7373333	7373394	protein_coding	Pkia	intron	ENSMUSG00000027499	ProperStrand	3	1	-5.4882
chr3	75950621	75950721	protein_coding	Fstl5	intron	ENSMUSG00000034098	NonProperStrand	33	chr3	105963320	105963410	protein_coding	Chi3l3	exon	ENSMUSG00000040809	NonProperStrand	47	1	-13.7248
chr5	146260995	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr12	103001030	103001046	protein_coding	Fbln5	intron	ENSMUSG00000021186	ProperStrand	8	1	-9.1415
chr8	80854714	80854836	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr1	167249971	167250002	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	1	-5.1275
chr11	64015706	64015806	LTR	RLTR20B3	ERVK	chr11RLTR20B364015345	NonProperStrand	1	chr11	64015840	64015931	LTR	RLTR20B3	ERVK	chr11RLTR20B364015832	NonProperStrand	2	1	-inf
chr19	47259097	47259179	protein_coding	Neurl1a	intron	ENSMUSG00000006435	ProperStrand	24	chr7	19691927	19691976	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-13.5138
chrX	37805223	37805343	processed_transcript	Gm14643	.	ENSMUSG00000086157	ProperStrand	22	chr10	68216105	68216129	protein_coding	Tmem26	intron	ENSMUSG00000060044	NonProperStrand	12	1	-17.4130
chr2	39559144	39559244	LTR	RLTR19-int	ERVK	chr2RLTR19-int39559079	ProperStrand	1	chr2	39558953	39559043	LTR	RLTR19	ERVK	chr2RLTR1939558598	ProperStrand	1	1	-inf
chr16	35827226	35827246	protein_coding	Hspbap1	utr3	ENSMUSG00000022849	ProperStrand	190	chr2	156450633	156450729	protein_coding	Dlgap4	intron	ENSMUSG00000061689	ProperStrand	127	1	-8.2104
chr13	62147871	62147961	SINE	B1_Mus2	Alu	chr13B1_Mus262147819	NonProperStrand	4	chr13	62147991	62148091	Unknown	MurSatRep1	Unknown	chr13MurSatRep162147954	ProperStrand	6	4	-inf
chr17	39847880	39847957	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	36025456	36025513	protein_coding-noncoding	Dhx16	utr5	ENSMUSG00000024422	ProperStrand	1	1	-inf
chr12	37627548	37627638	LTR	MLT1A0	MaLR	chr12MLT1A037627503	NonProperStrand	1	chr12	37627305	37627405	SINE	RSINE1	B4	chr12RSINE137627293	NonProperStrand	1	1	-inf
chr10	51321225	51321325	LINE	L1Md_F2	L1	chr10L1Md_F251321013	ProperStrand	1	chr10	51320792	51320882	LINE	L1_Mur3	L1	chr10L1_Mur351320450	ProperStrand	1	1	-inf
chrX	51464314	51464414	LTR	MT2C_Mm	ERVL	chrXMT2C_Mm51463976	NonProperStrand	1	chrX	51463559	51463649	LTR	RMER16	ERVK	chrXRMER1651463267	NonProperStrand	1	1	-inf
chr9	52155963	52156012	LINE	L1M2	L1	chr9L1M252155926	NonProperStrand	1	chr9	59668978	59669003	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr5	123914251	123914326	protein_coding	Mlxip	intron	ENSMUSG00000038342	ProperStrand	25	chr9	59668608	59668925	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-8.0391
chr11	100591475	100591556	protein_coding	Rab5c	utr5	ENSMUSG00000019173	ProperStrand	39	chr12	31617161	31624131	protein_coding	Sh3yl1	intron	ENSMUSG00000020669	NonProperStrand	18	1	-15.3424
chr17	9787676	9787766	LTR	RMER17A2	ERVK	chr17RMER17A29787391	ProperStrand	1	chr8	3390032	3390132	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	ProperStrand	5	1	-inf
chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	90542086	90542388	protein_coding-noncoding	Pglyrp4	utr5	ENSMUSG00000042250	ProperStrand	1	1	-inf
chr3	86801502	86801528	protein_coding	Cd1d1	exon	ENSMUSG00000028076	ProperStrand	8	chr7	107459786	107459808	protein_coding	P4ha3	intron	ENSMUSG00000051048	ProperStrand	15	1	-19.1188
chr5	134385088	134385178	SINE	B1_Mur1	Alu	chr5B1_Mur1134385112	NonProperStrand	6	chr5	134384957	134385057	SINE	B3A	B2	chr5B3A134384895	NonProperStrand	6	6	-inf
chr6	102999170	102999270	LTR	BGLII_B	ERVK	chr6BGLII_B102999016	ProperStrand	1	chr6	102999325	102999415	LTR	BGLII_B	ERVK	chr6BGLII_B102999283	ProperStrand	1	1	-inf
chr10	30113633	30113685	LINE	L1Md_T	L1	chr10L1Md_T30112776	NonProperStrand	1	chr5	146261165	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr13	44902403	44902493	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	chr2	180197096	180197377	protein_coding	Slco4a1	intron	ENSMUSG00000038963	NonProperStrand	161	3	-15.5327
chr8	53681092	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	10	chr9	123461957	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr8	115192630	115192719	protein_coding	Cntnap4	intron	ENSMUSG00000031772	ProperStrand	104	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.8993
chr15	81833797	81833881	protein_coding	Xrcc6	intron	ENSMUSG00000022471	ProperStrand	10	chr16	36970366	36970383	protein_coding	Fbxo40	exon	ENSMUSG00000047746	NonProperStrand	2	1	-20.0413
chr7	68086501	68086591	LINE	Lx	L1	chr7Lx68086297	ProperStrand	1	chr15	84282846	84290468	Simple_repeat	(TGGA)n	Simple_repeat	chr15(TGGA)n84290358	ProperStrand	4	1	-inf
chr3	132760495	132760554	protein_coding-noncoding	Ints12	utr5	ENSMUSG00000028016	ProperStrand	3	chr8	73289970	73290014	protein_coding	Ifi30	intron	ENSMUSG00000031838	ProperStrand	5	1	-inf
chr8	41029892	41029992	SINE	B4A	B4	chr8B4A41029856	ProperStrand	1	chr8	41029518	41029608	Simple_repeat	(TC)n	Simple_repeat	chr8(TC)n41029539	ProperStrand	1	1	-inf
chr9	40804323	40804483	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr9	63223747	63223818	protein_coding	Map2k5	intron	ENSMUSG00000058444	ProperStrand	118	1	-6.1009
chr6	119827466	119827566	LINE	L1_Rod	L1	chr6L1_Rod119827282	NonProperStrand	1	chr6	119827577	119827667	LTR	MTEa	MaLR	chr6MTEa119827539	NonProperStrand	1	1	-inf
chr17	39846720	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	104303399	104303419	protein_coding	Klhl8	intron	ENSMUSG00000029312	NonProperStrand	5	1	-3.1907
chr19	45774497	45774570	LTR	IAPEz-int	ERVK	chr19IAPEz-int45773954	NonProperStrand	10	chr19	45772784	45772864	SINE	B1F	Alu	chr19B1F45772804	ProperStrand	1	1	-inf
chr8	87765309	87765399	LTR	ORR1C2-int	MaLR	chr8ORR1C2-int87765324	ProperStrand	7	chr8	87765178	87765278	SINE	ID_B1	B4	chr8ID_B187765179	ProperStrand	4	4	-inf
chr10	42275539	42276623	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n42276173	NonProperStrand	1	chr10	42276635	42276725	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n42276542	NonProperStrand	1	1	-inf
chr1	106232705	106232777	LINE	L1MA9	L1	chr1L1MA9106232500	ProperStrand	1	chr1	106233289	106233360	LINE	Lx9	L1	chr1Lx9106233090	NonProperStrand	1	1	-inf
chr2	114112579	114113242	LINE	L1Md_F3	L1	chr2L1Md_F3114112278	NonProperStrand	1	chr6	3201485	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr11	109011791	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	172072880	172074287	protein_coding	Uap1	intron	ENSMUSG00000026670	ProperStrand	6	1	-10.8292
chrX	106187271	106192021	Low_complexity	CT-rich	Low_complexity	chrXCT-rich106187275	ProperStrand	2	chr7	99976737	99976833	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-16.9742
chr17	39847440	39847503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	101505132	101505207	SINE	B1_Mus2	Alu	chr11B1_Mus2101505081	NonProperStrand	1	1	-inf
chr16	84839135	84839168	protein_coding	Gabpa	intron	ENSMUSG00000008976	ProperStrand	42	chr13	97190546	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8202
chr17	39847249	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	120567426	120570174	SINE	B1F2	Alu	chr4B1F2120570093	NonProperStrand	3	1	-5.4882
chr13	97190558	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr9	64698756	64698834	protein_coding	Dennd4a	intron	ENSMUSG00000053641	NonProperStrand	54	1	-5.3273
chr16	96121962	96122081	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	ProperStrand	119	chr11	70041795	70041905	protein_coding	Bcl6b	exon	ENSMUSG00000000317	ProperStrand	1	1	-inf
chr10	112948661	112948683	LTR	MT2C_Mm	ERVL	chr10MT2C_Mm112948434	ProperStrand	8	chr17	39846465	39846605	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-4.2675
chr14	67784337	67784356	Simple_repeat	(TCTA)n	Simple_repeat	chr14(TCTA)n67784333	NonProperStrand	2	chr14	67784114	67784143	Simple_repeat	(TG)n	Simple_repeat	chr14(TG)n67784098	NonProperStrand	2	2	-inf
chr8	109605199	109605289	protein_coding-noncoding	Terf2	utr3	ENSMUSG00000031921	ProperStrand	1	chr8	109605064	109605164	protein_coding	Terf2	utr5	ENSMUSG00000031921	ProperStrand	37	1	-inf
chr5	34143482	34143529	LTR	RMER19A	ERVK	chr5RMER19A34143361	NonProperStrand	1	chr10	116533501	116533563	protein_coding	Frs2	intron	ENSMUSG00000020170	ProperStrand	47	1	-inf
chr14	65559343	65559433	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	chr11	85311841	85326881	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-8.9823
chr17	39847651	39847721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	29417062	29417142	antisense	Gm12089	.	ENSMUSG00000085165	ProperStrand	4	1	-3.7035
chr6	84694863	84694899	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	chr19	7215338	7215405	protein_coding	Macrod1	intron	ENSMUSG00000036278	NonProperStrand	109	1	-8.6119
chr13	35994319	35994427	protein_coding-noncoding	Rpp40	utr3	ENSMUSG00000021418	ProperStrand	8	chr13	35992419	35992453	protein_coding	Rpp40	intron	ENSMUSG00000021418	ProperStrand	11	1	-20.8373
chr14	40998927	41002440	LINE	L1Md_Gf	L1	chr14L1Md_Gf40997154	NonProperStrand	1	chr6	3201475	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr17	39846721	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	167440870	167440886	protein_coding	Ube2v1	intron	ENSMUSG00000078923	ProperStrand	4	1	-3.6552
chr17	46857227	46857327	protein_coding-noncoding	Pex6	utr5	ENSMUSG00000002763	NonProperStrand	4	chr17	46831822	46831912	protein_coding	Ppp2r5d	intron	ENSMUSG00000059409	ProperStrand	16	1	-inf
chr17	39847477	39847541	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	114274435	114276049	LTR	RMER2	ERV1	chr7RMER2114276008	ProperStrand	1	1	-inf
chr18	84809251	84809299	protein_coding	Cndp1	intron	ENSMUSG00000056162	ProperStrand	26	chr5	17776749	17776795	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-11.7965
chr19	32817988	32818041	SINE	B2_Mm2	B2	chr19B2_Mm232817862	NonProperStrand	1	chr3	88577650	88577706	protein_coding	Syt11	intron	ENSMUSG00000068923	NonProperStrand	69	1	-inf
chr15	37821159	37821249	LTR	MTA_Mm	MaLR	chr15MTA_Mm37820886	NonProperStrand	1	chr15	37821317	37821417	LTR	RLTR41	ERV1	chr15RLTR4137821284	NonProperStrand	1	1	-inf
chr10	119364547	119364637	protein_coding	Grip1	intron	ENSMUSG00000034813	NonProperStrand	73	chr10	120301935	120302035	protein_coding	Msrb3	intron	ENSMUSG00000051236	NonProperStrand	31	1	-12.9644
chr9	68766559	68766648	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	chr2	5550183	5550283	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-4.1532
chr8	80850756	80850838	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr6	113410999	113411032	protein_coding	Il17re	intron	ENSMUSG00000043088	NonProperStrand	4	1	-12.9503
chr5	137529476	137529638	LTR	MTE2b	MaLR	chr5MTE2b137529282	NonProperStrand	1	chr5	137529638	137529662	LTR	ORR1D2	MaLR	chr5ORR1D2137529634	NonProperStrand	8	1	-inf
chr15	63968098	63968169	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr9	110281293	110281317	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-4.2718
chr8	119837164	119837191	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	NonProperStrand	22	chr14	52075350	52075648	protein_coding	Vmn2r89	exon	ENSMUSG00000070448	NonProperStrand	29	1	-15.5293
chr12	111546892	111546979	LINE	Lx2B	L1	chr12Lx2B111546713	ProperStrand	1	chr12	111546476	111546534	LTR	RLTR10	ERVK	chr12RLTR10111546395	ProperStrand	1	1	-inf
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr5	100528660	100528688	protein_coding	Tmem150c	intron	ENSMUSG00000050640	NonProperStrand	14	1	-9.5112
chr14	115030511	115030553	LINE	Lx	L1	chr14Lx115029284	ProperStrand	1	chr17	39846686	39846752	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846962	39847038	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	35244513	35246967	LTR	MTE2a	MaLR	chr17MTE2a35244437	ProperStrand	2	1	-5.3533
chr2	151049875	151049965	lincRNA	Gm14149	intron	ENSMUSG00000067352	ProperStrand	3	chr5	106023334	106023434	protein_coding	Lrrc8c	intron	ENSMUSG00000054720	ProperStrand	6	1	-inf
chr4	133401001	133401091	SINE	B1_Mur3	Alu	chr4B1_Mur3133401007	ProperStrand	1	chr4	133401416	133401516	SINE	B2_Mm1t	B2	chr4B2_Mm1t133401398	NonProperStrand	1	1	-inf
chr5	146261117	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	193587075	193587139	protein_coding	Lpgat1	intron	ENSMUSG00000026623	ProperStrand	6	1	-9.7631
chr15	12818744	12818820	protein_coding	Drosha	intron	ENSMUSG00000022191	NonProperStrand	14	chr15	102391296	102391362	protein_coding	Atf7	intron	ENSMUSG00000052414	NonProperStrand	47	1	-15.4872
chr9	123461931	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	153346922	153347004	protein_coding	Rnf2	intron	ENSMUSG00000026484	ProperStrand	71	3	-3.3315
chr16	39652602	39652635	LINE	Lx6	L1	chr16Lx639652511	ProperStrand	1	chr16	39652231	39652283	LTR	LTR16A	ERVL	chr16LTR16A39652160	NonProperStrand	1	1	-inf
chr17	39847129	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	20568652	20568698	SINE	B1F	Alu	chr11B1F20568614	NonProperStrand	1	1	-inf
chr19	25362264	25362382	protein_coding	Kank1	intron	ENSMUSG00000032702	ProperStrand	85	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-7.1549
chrX	66388340	66388430	DNA	Charlie15a	MER1_type	chrXCharlie15a66388290	NonProperStrand	1	chrX	66388454	66388554	SINE	MIRc	MIR	chrXMIRc66388458	NonProperStrand	1	1	-inf
chr17	56134765	56134859	protein_coding	Fsd1	exon	ENSMUSG00000011589	NonProperStrand	4	chr17	56136875	56136931	protein_coding	Stap2	exon	ENSMUSG00000038781	ProperStrand	7	1	-inf
chr8	78115420	78115455	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	chr12	21286661	21286753	protein_coding	Itgb1bp1	intron	ENSMUSG00000062352	NonProperStrand	2	1	-15.3898
chr3	103178500	103178528	LINE	Lx5	L1	chr3Lx5103178409	NonProperStrand	2	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-14.0145
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr2	90780511	90780634	protein_coding	Celf1	utr5	ENSMUSG00000005506	ProperStrand	35	2	-20.2094
chr13	25737112	25737202	LINE	Lx2B	L1	chr13Lx2B25736632	ProperStrand	1	chr13	25736490	25736590	SINE	RSINE1	B4	chr13RSINE125736469	ProperStrand	1	1	-inf
chr11	73847125	73847215	LINE	L1Md_F3	L1	chr11L1Md_F373847106	NonProperStrand	1	chr11	73846771	73846871	LINE	Lx7	L1	chr11Lx773846502	NonProperStrand	1	1	-inf
chr17	39847687	39847734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	18240149	18240940	snoRNA	ENSMUSG00000080364_SNORA77	.	ENSMUSG00000080364	ProperStrand	2	1	-5.4040
chr9	123462102	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr19	38069201	38071815	protein_coding	Myof	intron	ENSMUSG00000048612	NonProperStrand	42	2	-3.3036
chr9	19657748	19657838	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chr15	66096424	66096524	protein_coding	Kcnq3	intron	ENSMUSG00000056258	NonProperStrand	30	1	-15.1264
chr7	29286078	29286178	LTR	MTD	MaLR	chr7MTD29285806	NonProperStrand	1	chr7	29286236	29286326	LTR	RMER15	ERVL	chr7RMER1529286225	NonProperStrand	1	1	-inf
chr17	39846578	39846661	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	80015067	80015139	protein_coding	Mgat3	intron	ENSMUSG00000042428	ProperStrand	5	1	-3.1907
chr4	41242609	41242639	protein_coding	Dcaf12	intron	ENSMUSG00000028436	NonProperStrand	1	chr9	113806358	113806437	protein_coding	Clasp2	intron	ENSMUSG00000033392	ProperStrand	70	1	-inf
chr12	55996773	55996792	protein_coding	Baz1a	intron	ENSMUSG00000035021	NonProperStrand	6	chr3	9465652	9465751	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-11.2309
chr15	99034592	99037055	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	chr17	33823083	33823099	protein_coding	Hnrnpm	utr5	ENSMUSG00000059208	ProperStrand	59	1	-12.1602
chr17	39847636	39847655	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	115296343	115296372	SINE	B4A	B4	chr9B4A115296301	ProperStrand	1	1	-inf
chr1	127329768	127329843	protein_coding	Actr3	intron	ENSMUSG00000026341	NonProperStrand	28	chr15	97159692	97159768	protein_coding	Fam113b	intron	ENSMUSG00000044250	NonProperStrand	7	1	-18.0354
chr8	33383892	33383958	LINE	L1MD2	L1	chr8L1MD233383803	ProperStrand	2	chr8	33384647	33384691	LINE	Lx8	L1	chr8Lx833384603	ProperStrand	2	2	-inf
chrX	70338375	70338402	protein_coding-noncoding	Xlr3a	utr3	ENSMUSG00000057836	NonProperStrand	1	chr9	123462079	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39848148	39848197	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	114723491	114723513	protein_coding	Cmtm8	intron	ENSMUSG00000041012	ProperStrand	2	1	-8.4422
chr18	36667335	36667408	protein_coding	Hbegf	intron	ENSMUSG00000024486	ProperStrand	6	chr9	40804752	40804839	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-12.1894
chr7	47186438	47186528	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	chr7	62167479	62167579	protein_coding	Luzp2	intron	ENSMUSG00000063297	ProperStrand	14	1	-17.7899
chr7	143266712	143266792	LINE	Lx8	L1	chr7Lx8143266707	ProperStrand	11	chr4	8724219	8724263	protein_coding	Chd7	intron	ENSMUSG00000041235	ProperStrand	101	1	-14.4439
chr13	21907106	21907172	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr14	31185353	31186762	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	1	-11.2405
chr9	123461823	123462145	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	132308736	132310370	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	7	-3.9829
chr13	36024108	36024185	LTR	MTA_Mm	MaLR	chr13MTA_Mm36023809	ProperStrand	2	chr11	69917460	69917629	protein_coding	Asgr2	intron	ENSMUSG00000040963	NonProperStrand	118	1	-17.9846
chr4	132352772	132352857	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr15	79984459	79984496	protein_coding	Tab1	intron	ENSMUSG00000022414	NonProperStrand	44	1	-10.3780
chrX	56192040	56192130	LINE	L1MA5A	L1	chrXL1MA5A56192004	ProperStrand	1	chrX	56191613	56191713	LINE	Lx2B	L1	chrXLx2B56191318	ProperStrand	1	1	-inf
chr5	61058715	61058815	LINE	L1_Mur3	L1	chr5L1_Mur361058667	NonProperStrand	1	chr5	61058534	61058624	SINE	B1_Mm	Alu	chr5B1_Mm61058523	NonProperStrand	1	1	-inf
chr3	101435531	101435609	Other	RMER1A	Other	chr3RMER1A101434962	NonProperStrand	6	chr2	32710062	32710121	SINE	B1_Mus2	Alu	chr2B1_Mus232710061	ProperStrand	1	1	-inf
chr11	75934953	75935053	protein_coding-noncoding	Glod4	utr3	ENSMUSG00000017286	ProperStrand	9	chr11	75935050	75935140	protein_coding	Glod4	intron	ENSMUSG00000017286	ProperStrand	22	9	-inf
chr10	42237354	42237420	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	chr9	45579412	45579498	protein_coding	Cep164	intron	ENSMUSG00000043987	NonProperStrand	25	1	-11.6348
chr4	84514109	84514177	LINE	L1_Mur1	L1	chr4L1_Mur184513663	NonProperStrand	2	chr4	84514259	84514312	LINE	Lx9	L1	chr4Lx984514259	NonProperStrand	1	1	-inf
chr8	107096422	107096441	Simple_repeat	(GAA)n	Simple_repeat	chr8(GAA)n107096251	NonProperStrand	18	chr4	119120359	119120465	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-10.1675
chr17	39847203	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	41435518	41435594	protein_coding	Efha2	intron	ENSMUSG00000039478	ProperStrand	3	1	-5.4882
chr6	71600788	71603936	LTR	RMER19B	ERVK	chr6RMER19B71600772	ProperStrand	1	chr6	71600552	71600787	SINE	B1_Mus1	Alu	chr6B1_Mus171600624	ProperStrand	1	1	-inf
chr1	78701367	78701396	protein_coding	Acsl3	intron	ENSMUSG00000032883	ProperStrand	34	chr6	8323306	8323325	protein_coding	Gm16039	intron	ENSMUSG00000089862	NonProperStrand	6	1	-18.0390
chr3	9428345	9428361	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	13	chr19	53820886	53820965	protein_coding	Rbm20	intron	ENSMUSG00000043639	NonProperStrand	7	1	-19.7600
chr18	33837292	33837387	LINE	L1_Mus1	L1	chr18L1_Mus133835736	NonProperStrand	9	chr18	34952470	34952680	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-15.2129
chr17	39843002	39843060	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr9	101081190	101081293	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	NonProperStrand	66	1	-5.2005
chr11	12397379	12397407	LINE	L1_Mur3	L1	chr11L1_Mur312397241	NonProperStrand	1	chr17	39846951	39846989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	21670934	21670999	LINE	Lx5	L1	chr14Lx521670744	NonProperStrand	1	chr17	39847552	39847612	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	119876068	119876158	miRNA	Mir338	.	ENSMUSG00000065600	NonProperStrand	2	chr11	119876158	119876258	protein_coding	Aatk	intron	ENSMUSG00000025375	NonProperStrand	61	2	-inf
chr17	51752091	51752161	LINE	Lx6	L1	chr17Lx651751068	NonProperStrand	1	chr6	47544519	47544565	protein_coding	Ezh2	intron	ENSMUSG00000029687	ProperStrand	27	1	-inf
chr4	133865969	133866014	SINE	B1_Mur3	Alu	chr4B1_Mur3133865883	ProperStrand	1	chr3	108554610	108554665	protein_coding	Aknad1	exon	ENSMUSG00000049565	NonProperStrand	220	1	-inf
chr14	121187736	121187836	LINE	Lx2B	L1	chr14Lx2B121187754	NonProperStrand	5	chr14	121187646	121187736	LINE	MusHAL1	L1	chr14MusHAL1121186394	NonProperStrand	5	5	-inf
chr1	87778942	87780129	LTR	IAPEY3-int	ERVK	chr1IAPEY3-int87772720	NonProperStrand	120	chr17	32334068	32334168	protein_coding	Brd4	utr3	ENSMUSG00000024002	ProperStrand	47	1	-11.1226
chr17	39847257	39847343	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	141919649	141919709	LTR	MTE2b	MaLR	chr4MTE2b141919601	NonProperStrand	1	1	-inf
chr7	126152481	126152571	LTR	MTD	MaLR	chr7MTD126152467	ProperStrand	6	chr7	126152386	126152486	LTR	ORR1B1	MaLR	chr7ORR1B1126152079	ProperStrand	6	6	-inf
chr9	59692284	59692316	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr16	16074930	16075031	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	1	-5.1385
chr6	124931492	124932117	LINE	L1M5	L1	chr6L1M5124931404	ProperStrand	1	chr13	44869575	44869611	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	4082723	4082752	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr12	58687363	58687440	antisense	4921518K17Rik	.	ENSMUSG00000085851	ProperStrand	1	1	-inf
chr14	111459465	111459555	LINE	Lx6	L1	chr14Lx6111459366	ProperStrand	1	chr14	111459259	111459359	LTR	MT2C_Mm	ERVL	chr14MT2C_Mm111458901	ProperStrand	1	1	-inf
chrX	17474830	17474852	LINE	L1_Mus2	L1	chrXL1_Mus217474064	NonProperStrand	1	chr2	71345557	71345639	protein_coding	Metap1d	intron	ENSMUSG00000041921	NonProperStrand	21	1	-inf
chr8	85284169	85286391	LTR	HERV16-int	ERVL	chr8HERV16-int85286348	ProperStrand	1	chr1	194770473	194770513	protein_coding	Syt14	intron	ENSMUSG00000016200	NonProperStrand	14	1	-inf
chr13	21914906	21914927	LTR	RMER16-int	ERVK	chr13RMER16-int21914594	ProperStrand	5	chr14	30495238	30495341	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	112	1	-15.9617
chr2	91595493	91595753	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	chr5	8430753	8430813	protein_coding	Slc25a40	intron	ENSMUSG00000054099	ProperStrand	50	2	-18.5373
chr2	117399413	117399513	LINE	Lx8	L1	chr2Lx8117399233	ProperStrand	1	chr2	117399829	117399919	LINE	Lx8	L1	chr2Lx8117399582	ProperStrand	1	1	-inf
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr16	35981617	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-5.7723
chr2	178190299	178190399	protein_coding	Cdh26	intron	ENSMUSG00000039155	ProperStrand	11	chr2	178152866	178152956	protein_coding	9030418K01Rik	intron	ENSMUSG00000070476	ProperStrand	11	1	-18.9240
chr9	48168377	48168429	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n48168324	ProperStrand	1	chr14	60212360	60212422	protein_coding	Cdadc1	intron	ENSMUSG00000021982	ProperStrand	6	1	-inf
chr1	78696138	78696429	protein_coding	Acsl3	intron	ENSMUSG00000032883	ProperStrand	34	chr8	101986134	101986153	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-13.2052
chr7	112760435	112760464	protein_coding	Trim3	intron	ENSMUSG00000036989	NonProperStrand	139	chr17	5171814	5171833	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-6.8779
chr8	84672286	84672371	SINE	RSINE1	B4	chr8RSINE184672264	ProperStrand	3	chr5	121205804	121206669	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-16.2619
chr7	47188353	47188443	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	chr10	7409363	7409463	protein_coding	Lats1	intron	ENSMUSG00000040021	ProperStrand	1	1	-inf
chr4	147232408	147232498	SINE	B3	B2	chr4B3147232428	NonProperStrand	1	chr4	146513033	146513133	protein_coding	Gm13139	intron	ENSMUSG00000067916	ProperStrand	23	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr15	80938669	80938776	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	1	-8.6453
chr13	44869580	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr5	144906332	144906425	protein_coding	Lmtk2	intron	ENSMUSG00000038970	NonProperStrand	132	1	-3.0308
chrX	61155355	61155445	LTR	BGLII_B	ERVK	chrXBGLII_B61155239	NonProperStrand	1	chrX	61154973	61155073	LTR	RMER5	ERV1	chrXRMER561154979	ProperStrand	1	1	-inf
chr17	39847763	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	86434646	86434666	protein_coding	Abhd2	intron	ENSMUSG00000039202	NonProperStrand	5	2	-5.9065
chr13	86748008	86748098	LINE	L1_Mm	L1	chr13L1_Mm86747990	ProperStrand	1	chr13	86747802	86747902	LINE	MusHAL1	L1	chr13MusHAL186747773	ProperStrand	1	1	-inf
chr19	5796157	5796268	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr5	114431897	114431921	protein_coding	Ssh1	intron	ENSMUSG00000042121	ProperStrand	15	1	-7.1829
chr17	39848482	39848546	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr12	31305891	31305955	LTR	ORR1B2	MaLR	chr12ORR1B231305897	NonProperStrand	1	1	-inf
chr3	69739724	69739839	LTR	ORR1B2-int	MaLR	chr3ORR1B2-int69739599	ProperStrand	1	chr3	69740838	69740879	SINE	B3	B2	chr3B369740766	ProperStrand	1	1	-inf
chr15	76450912	76451002	LTR	RLTR21	ERVK	chr15RLTR2176450873	NonProperStrand	2	chr15	76450712	76450812	SINE	B1_Mus1	Alu	chr15B1_Mus176450727	NonProperStrand	2	2	-inf
chr17	32869346	32869396	SINE	B2_Mm1a	B2	chr17B2_Mm1a32869347	NonProperStrand	2	chr4	116067035	116067133	protein_coding	Mast2	intron	ENSMUSG00000003810	ProperStrand	73	1	-19.5916
chr17	63321328	63321413	LINE	L1_Mur3	L1	chr17L1_Mur363321132	ProperStrand	5	chr3	116595165	116603464	protein_coding	Frrs1	intron	ENSMUSG00000033386	ProperStrand	12	1	-inf
chr5	112291779	112291879	LTR	MTD	MaLR	chr5MTD112291758	ProperStrand	2	chr5	112291597	112291687	LTR	ORR1A1	MaLR	chr5ORR1A1112291572	ProperStrand	2	2	-inf
chr12	76301369	76302968	SINE	B4A	B4	chr12B4A76301244	ProperStrand	4	chr9	123462128	123462183	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr2	156692494	156692584	protein_coding-noncoding	1110008F13Rik	utr5	ENSMUSG00000027637	ProperStrand	2	chr2	156692701	156692801	protein_coding	1110008F13Rik	intron	ENSMUSG00000027637	ProperStrand	4	1	-22.1285
chr13	109271150	109271240	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chrX	95951971	95952071	protein_coding	Ophn1	intron	ENSMUSG00000031214	ProperStrand	39	4	-inf
chr18	62958850	62958940	LTR	MTE2a	MaLR	chr18MTE2a62958753	ProperStrand	1	chr18	62958524	62958624	SINE	RSINE1	B4	chr18RSINE162958528	NonProperStrand	1	1	-inf
chr11	62604511	62604542	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr4	123293148	123293240	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	134	1	-11.2270
chr7	24568131	24568221	LTR	ORR1A0-int	MaLR	chr7ORR1A0-int24566507	NonProperStrand	7	chr7	24568250	24568350	LTR	ORR1A0	MaLR	chr7ORR1A024568279	NonProperStrand	8	2	-inf
chr17	31084017	31084107	SINE	ID4_	ID	chr17ID4_31084033	ProperStrand	1	chr17	31084103	31084203	Simple_repeat	(GA)n	Simple_repeat	chr17(GA)n31084112	ProperStrand	1	1	-inf
chr5	33531130	33532522	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr5	33529741	33530316	LTR	RLTR10-int	ERVK	chr5RLTR10-int33529528	NonProperStrand	40	5	-inf
chr15	25792450	25792496	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	163	chr15	37996633	37996723	protein_coding	Ubr5	intron	ENSMUSG00000037487	ProperStrand	87	1	-9.2716
chr2	61720565	61722753	LTR	LTRIS_Mus	ERV1	chr2LTRIS_Mus61722503	ProperStrand	2	chr13	97190548	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr9	30952764	30952854	LTR	ORR1E	MaLR	chr9ORR1E30952748	NonProperStrand	5	chr9	30952657	30952757	SINE	PB1D9	Alu	chr9PB1D930952635	ProperStrand	5	5	-inf
chr7	112898750	112898933	protein_coding	Tpp1	exon	ENSMUSG00000030894	NonProperStrand	15	chr7	112903418	112904797	protein_coding	Dchs1	exon	ENSMUSG00000036862	NonProperStrand	19	2	-20.4213
chr11	30824727	30824761	LINE	Lx2	L1	chr11Lx230824136	NonProperStrand	6	chr12	78350926	78351030	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-10.6210
chr13	36002931	36003010	Low_complexity	GA-rich	Low_complexity	chr13GA-rich36002895	NonProperStrand	1	chr13	35998926	35998966	SINE	B2_Mm2	B2	chr13B2_Mm235998931	ProperStrand	1	1	-inf
chr2	39186060	39186097	LINE	L1_Mur3	L1	chr2L1_Mur339185365	ProperStrand	2	chr9	123461935	123461983	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847277	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	152332311	152332389	Simple_repeat	(TCCA)n	Simple_repeat	chr4(TCCA)n152332244	ProperStrand	5	1	-4.3348
chr12	99645567	99645660	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr9	107608969	107608986	protein_coding	Sema3f	intron	ENSMUSG00000034684	NonProperStrand	15	1	-14.9085
chr14	103093786	103093876	Simple_repeat	(GAGAA)n	Simple_repeat	chr14(GAGAA)n103093786	NonProperStrand	2	chr14	103093679	103093779	Simple_repeat	(GGGAA)n	Simple_repeat	chr14(GGGAA)n103093606	NonProperStrand	2	2	-inf
chr13	29959533	29959626	SINE	RSINE1	B4	chr13RSINE129959486	ProperStrand	1	chr13	29947466	29947507	protein_coding	Cdkal1	utr5	ENSMUSG00000006191	ProperStrand	460	1	-inf
chr16	16029704	16029765	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	chr12	81495757	81495789	protein_coding	Dcaf5	intron	ENSMUSG00000049106	ProperStrand	69	1	-10.5604
chrX	93369966	93370053	LINE	Lx8	L1	chrXLx893369917	NonProperStrand	1	chrX	93372109	93372131	LINE	Lx9	L1	chrXLx993370482	NonProperStrand	2	1	-inf
chr5	146261163	146261199	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	66335652	66335723	protein_coding	Chrna9	intron	ENSMUSG00000029205	NonProperStrand	122	1	-3.7148
chr5	146261174	146261211	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr13	74491523	74491606	protein_coding	Ccdc127	intron	ENSMUSG00000021578	NonProperStrand	4	1	-10.6768
chr14	100039193	100039225	LTR	MLT1D	MaLR	chr14MLT1D100038983	ProperStrand	1	chr13	97190585	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr1	192745658	192745687	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chrX	87238394	87238413	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	1	-9.9314
chr8	70690778	70690834	LINE	L1Md_F3	L1	chr8L1Md_F370690651	NonProperStrand	3	chr17	39847989	39848055	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr13	104738220	104738282	LTR	IAPEz-int	ERVK	chr13IAPEz-int104737559	ProperStrand	3	chr13	104737313	104737385	LTR	IAPLTR2_Mm	ERVK	chr13IAPLTR2_Mm104737077	ProperStrand	2	2	-inf
chr2	109900243	109900286	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	chr9	118574058	118574151	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-6.6104
chr17	35001766	35004224	protein_coding-noncoding	C2	utr3	ENSMUSG00000024371	NonProperStrand	2	chr17	35004223	35004261	protein_coding	C2	intron	ENSMUSG00000024371	NonProperStrand	158	1	-17.4998
chr12	80957307	80957341	DNA	MER63B	AcHobo	chr12MER63B80957253	ProperStrand	1	chr15	86194919	86195252	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-inf
chr14	91020212	91020312	LINE	L1Md_F2	L1	chr14L1Md_F291019846	ProperStrand	1	chr14	91020401	91020491	LINE	Lx5	L1	chr14Lx591020290	ProperStrand	1	1	-inf
chr6	49261274	49261297	LTR	RMER6A	ERVK	chr6RMER6A49261136	ProperStrand	5	chr6	49260888	49260919	SINE	ID_B1	B4	chr6ID_B149260755	NonProperStrand	3	1	-inf
chr12	22916078	22916143	LTR	MT2A	ERVL	chr12MT2A22916072	ProperStrand	1	chr2	32233193	32233265	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	193	1	-inf
chr10	4247099	4247188	LINE	L1_Mus2	L1	chr10L1_Mus24246555	ProperStrand	1	chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	9140292	9140348	protein_coding	Dmtf1	intron	ENSMUSG00000042508	ProperStrand	25	chr4	5690278	5690345	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	1	-11.9686
chr8	115005748	115005820	LINE	Lx3C	L1	chr8Lx3C115004285	NonProperStrand	8	chr11	59460534	59460558	SINE	B3	B2	chr11B359460465	ProperStrand	1	1	-inf
chr18	19844871	19844971	LINE	Lx2A1	L1	chr18Lx2A119844794	ProperStrand	1	chr18	19845241	19845332	LINE	Lx7	L1	chr18Lx719845231	ProperStrand	1	1	-inf
chr3	87086569	87088172	LINE	L1Md_F2	L1	chr3L1Md_F287085258	NonProperStrand	11	chr17	39847163	39847256	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-4.9635
chr2	91929869	91929945	lincRNA	Gm13780	intron	ENSMUSG00000087197	ProperStrand	19	chr13	29431168	29431234	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	1	-10.2743
chr6	3201468	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	33382077	33382143	protein_coding	Zfp955a	intron	ENSMUSG00000008686	ProperStrand	4	1	-8.3508
chr15	80082565	80083335	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-5.2507
chr7	34375324	34389389	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int34374263	NonProperStrand	4	chr7	34389367	34389457	pseudogene	Gm12767	.	ENSMUSG00000083381	ProperStrand	3	2	-inf
chr17	39843934	39844023	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr19	10592537	10592593	protein_coding	Sdhaf2	intron	ENSMUSG00000024668	ProperStrand	7	1	-8.3004
chr9	68429285	68429375	LINE	L1_Mus3	L1	chr9L1_Mus368424132	NonProperStrand	1	chr9	69357129	69357228	LTR	MTEa	MaLR	chr9MTEa69357023	ProperStrand	1	1	-inf
chr18	23867606	23867706	DNA	URR1A	MER1_type	chr18URR1A23867600	ProperStrand	1	chr18	23867403	23867493	LTR	RLTR28	ERVL	chr18RLTR2823867389	ProperStrand	1	1	-inf
chr14	18849408	18849434	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr3	90006535	90006608	protein_coding	Nup210l	intron	ENSMUSG00000027939	NonProperStrand	45	1	-10.5362
chr4	56805904	56805920	protein_coding	Ikbkap	intron	ENSMUSG00000028431	ProperStrand	109	chr11	98251055	98251167	protein_coding	Pgap3	utr3	ENSMUSG00000038208	NonProperStrand	11	1	-14.2908
chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr10	127022508	127022615	protein_coding	Lrp1	intron	ENSMUSG00000040249	ProperStrand	36	1	-10.9754
chr2	29147285	29147385	LINE	L3	CR1	chr2L329147210	ProperStrand	3	chr17	39846807	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-8.0300
chr7	112788077	112788142	protein_coding-noncoding	Arfip2	utr3	ENSMUSG00000030881	NonProperStrand	24	chr7	112790968	112791023	protein_coding	Fxc1	utr3	ENSMUSG00000089847	ProperStrand	81	1	-13.2751
chr17	36186148	36186164	antisense	BC023719	.	ENSMUSG00000092365	NonProperStrand	1	chr3	157993151	157993256	protein_coding	Lrrc7	intron	ENSMUSG00000028176	ProperStrand	64	1	-inf
chr18	31840050	31840183	protein_coding	Sap130	exon	ENSMUSG00000024260	ProperStrand	80	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	1	-11.5474
chr2	34544526	34544626	protein_coding	Gapvd1	intron	ENSMUSG00000026867	NonProperStrand	127	chr16	31038629	31038719	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	1	-7.2391
chr2	168556712	168556814	protein_coding	Atp9a	intron	ENSMUSG00000027546	ProperStrand	28	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-9.3824
chr13	67862611	67862660	LTR	MYSERV-int	ERVK	chr13MYSERV-int67862080	NonProperStrand	1	chr13	67847540	67847637	protein_coding	4930441O14Rik	intron	ENSMUSG00000044081	ProperStrand	6	1	-inf
chr9	123461802	123461873	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chrX	144429515	144429584	protein_coding	Gm15080	intron	ENSMUSG00000072931	ProperStrand	7	1	-5.1121
chr11	6419280	6419565	protein_coding	Myo1g	utr5	ENSMUSG00000020437	NonProperStrand	91	chr19	4193207	4193244	protein_coding	Ppp1ca	exon	ENSMUSG00000040385	ProperStrand	19	1	-13.5208
chr19	6977034	6977050	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n6976839	ProperStrand	1	chr2	122002246	122002364	protein_coding	Trim69	intron	ENSMUSG00000033368	ProperStrand	9	1	-inf
chr2	22744862	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	115635840	115635903	LTR	RMER3D-int	ERVK	chr6RMER3D-int115635713	ProperStrand	2	1	-14.2535
chr17	39846299	39846354	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	38417600	38417619	SINE	B2_Mm1t	B2	chr13B2_Mm1t38417600	NonProperStrand	1	1	-inf
chr4	4012821	4012911	LINE	L1_Mur3	L1	chr4L1_Mur34012571	NonProperStrand	1	chr4	4013102	4013202	LINE	Lx7	L1	chr4Lx74013047	NonProperStrand	1	1	-inf
chr12	57279964	57280028	LINE	Lx4B	L1	chr12Lx4B57279600	NonProperStrand	1	chr11	70041469	70041798	protein_coding	Bcl6b	intron	ENSMUSG00000000317	NonProperStrand	2	1	-inf
chr19	46084188	46084295	lincRNA	4930505N22Rik	intron	ENSMUSG00000090325	ProperStrand	37	chr7	103851845	103851862	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-13.4095
chr7	141451054	141451328	LINE	Lx2	L1	chr7Lx2141451081	ProperStrand	221	chr7	141447990	141451048	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	134	65	-inf
chr10	81559648	81561300	LINE	L1_Mur2	L1	chr10L1_Mur281560964	NonProperStrand	3	chr10	81559450	81559488	LTR	ORR1E	MaLR	chr10ORR1E81559383	ProperStrand	1	1	-inf
chr17	39843954	39843992	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr7	16915935	16916038	protein_coding	Sae1	intron	ENSMUSG00000052833	ProperStrand	49	1	-4.3712
chr10	27648437	27648537	LTR	MLT1D	MaLR	chr10MLT1D27648138	NonProperStrand	3	chr14	69783661	69783751	antisense	1700092C10Rik	.	ENSMUSG00000092499	ProperStrand	10	3	-inf
chrX	105119317	105119390	DNA	Tigger7	MER2_type	chrXTigger7105119226	ProperStrand	1	chr17	39847990	39848051	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	77754926	77754995	LINE	Lx3C	L1	chr13Lx3C77754866	NonProperStrand	1	chr13	77752715	77752774	protein_coding	2210408I21Rik	utr3	ENSMUSG00000071252	ProperStrand	25	1	-inf
chr2	27533400	27533802	protein_coding	Rxra	intron	ENSMUSG00000015846	ProperStrand	73	chr5	107668921	107669012	protein_coding	Tgfbr3	intron	ENSMUSG00000029287	NonProperStrand	60	1	-11.6282
chr18	36136172	36136262	protein_coding	Psd2	intron	ENSMUSG00000024347	NonProperStrand	26	chr8	25047465	25047565	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	2	-17.1525
chr18	24294028	24294118	LTR	ORR1E	MaLR	chr18ORR1E24293890	ProperStrand	1	chr6	28784234	28784334	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-inf
chr15	85098211	85098229	protein_coding	Fbln1	intron	ENSMUSG00000006369	NonProperStrand	34	chr14	27673605	27673664	protein_coding	Dnahc12	intron	ENSMUSG00000021879	ProperStrand	39	1	-14.0407
chr4	10209611	10209711	SINE	B3A	B2	chr4B3A10209602	ProperStrand	1	chr4	10209827	10209917	SINE	ID_B1	B4	chr4ID_B110209784	ProperStrand	1	1	-inf
chr4	153722192	153722210	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	43	chr9	78480311	78480540	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	2	-13.0447
chr11	54697777	54697877	SINE	B4	B4	chr11B454697791	NonProperStrand	3	chr11	54697686	54697776	SINE	RSINE1	B4	chr11RSINE154697667	NonProperStrand	3	3	-inf
chr11	12319921	12319982	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr11	23393762	23393844	protein_coding	Ahsa2	intron	ENSMUSG00000020288	NonProperStrand	2	1	-16.5162
chr14	67865288	67865353	protein_coding	Ebf2	intron	ENSMUSG00000022053	NonProperStrand	40	chr3	121766099	121766171	protein_coding	Abca4	intron	ENSMUSG00000028125	NonProperStrand	11	1	-16.3322
chr6	35082932	35082980	protein_coding	Cnot4	intron	ENSMUSG00000038784	ProperStrand	34	chr19	5382337	5382726	protein_coding	Sart1	exon	ENSMUSG00000039148	ProperStrand	31	1	-14.5060
chr17	39847732	39847814	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	144831236	144831308	LTR	RMER17B	ERVK	chr5RMER17B144830495	NonProperStrand	1	1	-inf
chr3	153584158	153584258	SINE	B3	B2	chr3B3153584059	ProperStrand	1	chr3	153584286	153584376	SINE	PB1D10	Alu	chr3PB1D10153584254	ProperStrand	1	1	-inf
chr16	93734846	93734961	protein_coding	Dopey2	intron	ENSMUSG00000022946	ProperStrand	55	chr5	92066500	92066536	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-9.5929
chr12	26438196	26438296	LINE	L1Md_A	L1	chr12L1Md_A26437336	NonProperStrand	1	chr12	26438420	26438510	LTR	ORR1D1	MaLR	chr12ORR1D126438351	ProperStrand	1	1	-inf
chr15	79345656	79345729	LTR	RMER15	ERVL	chr15RMER1579345340	NonProperStrand	1	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr19	3588000	3588092	protein_coding	Lrp5	intron	ENSMUSG00000024913	ProperStrand	159	1	-9.6730
chr12	78350926	78351044	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	110105210	110105229	protein_coding	5430403G16Rik	exon	ENSMUSG00000072763	NonProperStrand	10	1	-9.5257
chr7	104636715	104636733	protein_coding	Ints4	intron	ENSMUSG00000025133	NonProperStrand	6	chr2	5379300	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr15	89201212	89201302	protein_coding-noncoding	Ncaph2	utr5	ENSMUSG00000008690	NonProperStrand	1	chr15	89201032	89201132	protein_coding	Ncaph2	intron	ENSMUSG00000008690	NonProperStrand	5	1	-inf
chr11	109011748	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	109520156	109520197	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-4.0030
chr1	63584263	63584360	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chr8	14979928	14979946	protein_coding	Arhgef10	exon	ENSMUSG00000071176	ProperStrand	37	1	-9.0314
chr17	39847174	39847241	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	21220503	21220552	LTR	MMETn-int	ERVK	chr18MMETn-int21220410	NonProperStrand	1	1	-inf
chr9	92324179	92324279	LINE	Lx6	L1	chr9Lx692323814	ProperStrand	1	chr9	92324482	92324572	LTR	BGLII	ERVK	chr9BGLII92324257	ProperStrand	1	1	-inf
chr7	110225711	110225834	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int110221954	ProperStrand	3	chr9	123461802	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr12	12351693	12351709	protein_coding	Fam49a	intron	ENSMUSG00000020589	ProperStrand	31	chr12	78350926	78351069	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-7.2082
chr5	150569551	150569590	LTR	MTD	MaLR	chr5MTD150569443	ProperStrand	2	chr5	150558401	150558498	protein_coding	B3galtl	intron	ENSMUSG00000051950	ProperStrand	33	1	-20.7426
chr5	146261174	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	5050144	5050208	protein_coding	Ubn1	utr5	ENSMUSG00000039473	ProperStrand	34	1	-6.1779
chr7	16352530	16352619	LINE	L1_Mus2	L1	chr7L1_Mus216352552	ProperStrand	10	chr7	16336469	16336524	protein_coding	Obox5	intron	ENSMUSG00000074366	NonProperStrand	30	1	-17.0564
chr17	39847270	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	70039295	70039363	protein_coding	Gm9755	exon	ENSMUSG00000030735	ProperStrand	2	1	-6.5615
chr13	46919613	46919703	protein_coding	Kif13a	intron	ENSMUSG00000021375	ProperStrand	101	chr8	122572764	122572864	protein_coding	Crispld2	intron	ENSMUSG00000031825	ProperStrand	44	1	-11.6014
chr3	116423564	116423654	LINE	L1Md_T	L1	chr3L1Md_T116423564	ProperStrand	1	chr3	116422628	116423507	SINE	ID_B1	B4	chr3ID_B1116423454	NonProperStrand	1	1	-inf
chr11	70964949	70965034	LINE	L1_Mus1	L1	chr11L1_Mus170963737	ProperStrand	2	chrX	93406499	93406552	LINE	Lx9	L1	chrXLx993406154	NonProperStrand	2	1	-19.8939
chr9	118674951	118674988	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr9	7939511	7939580	protein_coding	Yap1	intron	ENSMUSG00000053110	ProperStrand	74	1	-5.5596
chr2	71211783	71211802	LINE	L1ME2z	L1	chr2L1ME2z71211384	NonProperStrand	7	chr1	62817369	62817471	protein_coding	Nrp2	intron	ENSMUSG00000025969	ProperStrand	116	1	-15.1300
chr2	166166907	166166997	SINE	B3	B2	chr2B3166166899	ProperStrand	1	chr2	166166735	166166835	SINE	B3A	B2	chr2B3A166166685	NonProperStrand	1	1	-inf
mmu-miR-706	0	20	miRNA	mmu-miR-706	.	mmu-miR-706	ProperStrand	4	chr14	122346249	122346281	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-16.3329
chr11	44456452	44458255	protein_coding-noncoding	Ebf1	utr5	ENSMUSG00000057098	NonProperStrand	5	chr11	44455609	44456457	protein_coding	Ebf1	intron	ENSMUSG00000057098	NonProperStrand	5	1	-inf
chr6	54599774	54599874	LTR	ORR1C2	MaLR	chr6ORR1C254599802	ProperStrand	1	chr6	54599647	54599737	LTR	RMER15	ERVL	chr6RMER1554599581	NonProperStrand	1	1	-inf
chr13	108145193	108145250	LINE	L1Md_T	L1	chr13L1Md_T108144155	ProperStrand	4	chr17	39846944	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr17	39846971	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	109720300	109720387	LTR	MT2A	ERVL	chr8MT2A109720099	NonProperStrand	1	1	-inf
chr12	32273598	32273698	LTR	ORR1A3	MaLR	chr12ORR1A332273548	ProperStrand	1	chr12	32273316	32273406	SINE	RSINE1	B4	chr12RSINE132273270	ProperStrand	1	1	-inf
chr11	86300425	86300477	protein_coding	Rnft1	intron	ENSMUSG00000020521	NonProperStrand	10	chr9	96146556	96146600	protein_coding	Tfdp2	intron	ENSMUSG00000032411	ProperStrand	65	1	-15.5427
chr11	62325580	62325597	protein_coding	Pigl	intron	ENSMUSG00000014245	NonProperStrand	26	chr2	24849877	24849963	protein_coding	Pnpla7	intron	ENSMUSG00000036833	NonProperStrand	78	1	-13.1884
chr4	125184572	125184691	protein_coding	Grik3	intron	ENSMUSG00000001985	ProperStrand	112	chr15	76455119	76455226	protein_coding	Vps28	intron	ENSMUSG00000062381	ProperStrand	13	1	-13.8883
chr9	31179174	31179301	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	chr13	97190561	97190582	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-5.7434
chr16	23110755	23110785	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	123	chr16	23110844	23110868	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-10.4510
chr15	103403152	103403242	LINE	L1Md_F2	L1	chr15L1Md_F2103402835	ProperStrand	1	chr15	103437460	103437560	LTR	IAPLTR2_Mm	ERVK	chr15IAPLTR2_Mm103437123	NonProperStrand	1	1	-inf
chr17	39845922	39845992	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr6	125114234	125114294	protein_coding	Gapdh	intron	ENSMUSG00000057666	NonProperStrand	6	1	-6.3814
chr8	85646372	85646462	LINE	L1Md_A	L1	chr8L1Md_A85641725	NonProperStrand	1	chr8	85646530	85646630	LINE	L1Md_A	L1	chr8L1Md_A85646368	NonProperStrand	1	1	-inf
chr5	143509421	143509521	LINE	L1M5	L1	chr5L1M5143509421	NonProperStrand	3	chr5	143509533	143509623	SINE	B3	B2	chr5B3143509543	NonProperStrand	3	3	-inf
chr14	122567486	122567596	LTR	MT2C_Mm	ERVL	chr14MT2C_Mm122567260	ProperStrand	1	chr13	49532463	49532503	protein_coding	Ippk	intron	ENSMUSG00000021385	ProperStrand	2	1	-inf
chr16	91052087	91052103	lincRNA	4931406G06Rik	intron	ENSMUSG00000085398	NonProperStrand	1	chr9	123462126	123462165	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847867	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	88561420	88561439	protein_coding	Cpeb1	intron	ENSMUSG00000025586	ProperStrand	2	1	-5.4040
chr17	39846663	39846933	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	73085698	73085777	Other	RMER1A	Other	chr9RMER1A73085714	ProperStrand	2	2	-inf
chr12	36132662	36132744	LINE	L1Md_F2	L1	chr12L1Md_F236132595	ProperStrand	1	chr13	44869946	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr4	43492784	43492866	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr2	73012887	73012915	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	1	-6.6239
chr12	113925207	113925296	LTR	MLT1B	MaLR	chr12MLT1B113925233	NonProperStrand	1	chr12	113925359	113925459	SINE	B2_Mm1a	B2	chr12B2_Mm1a113925320	ProperStrand	1	1	-inf
chr5	3605880	3605942	protein_coding	Pex1	exon	ENSMUSG00000005907	ProperStrand	26	chr17	45569563	45569650	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-10.4878
chr5	140179766	140179803	LTR	MTC-int	MaLR	chr5MTC-int140179762	ProperStrand	4	chr11	35936029	35936115	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-14.0579
chr5	146261278	146261339	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	73126265	73126342	protein_coding	Cir1	intron	ENSMUSG00000041777	ProperStrand	15	1	-10.6884
chr11	83351162	83365737	LTR	RLTR10B	ERVK	chr11RLTR10B83365626	NonProperStrand	3	chr11	83351021	83351111	SINE	B2_Mm1t	B2	chr11B2_Mm1t83350925	NonProperStrand	5	2	-inf
chr12	25057414	25057431	LTR	RMER16-int	ERVK	chr12RMER16-int25057131	ProperStrand	7	chr17	39843817	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	2	-11.8076
chr10	127284166	127284222	LTR	RLTR45	ERVK	chr10RLTR45127283722	NonProperStrand	1	chr12	81167389	81167446	LTR	MLT1G1	MaLR	chr12MLT1G181167110	NonProperStrand	1	1	-inf
chr8	34086421	34086531	LINE	L1Md_F2	L1	chr8L1Md_F234086434	ProperStrand	1	chr19	30690947	30690972	protein_coding	Prkg1	intron	ENSMUSG00000052920	ProperStrand	30	1	-inf
chr1	157268282	157268372	SINE	MIR	MIR	chr1MIR157268271	ProperStrand	2	chr1	157268151	157268251	SINE	MIRb	MIR	chr1MIRb157268015	NonProperStrand	2	2	-inf
chrX	12801863	12801896	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr15	81729190	81729293	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	1	-11.8094
chr11	117230925	117230993	LTR	ORR1D1	MaLR	chr11ORR1D1117230890	ProperStrand	1	chr11	117231210	117231276	LTR	ORR1D1	MaLR	chr11ORR1D1117231153	ProperStrand	1	1	-inf
chr12	87149674	87149744	protein_coding	Mfsd7c	intron	ENSMUSG00000034258	ProperStrand	18	chr9	106888286	106888346	protein_coding	Dock3	intron	ENSMUSG00000039716	ProperStrand	67	1	-14.2476
chr12	105618783	105618883	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int105618353	NonProperStrand	1	chr12	105618995	105619085	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int105618795	NonProperStrand	1	1	-inf
chr12	44635882	44635972	LINE	L1M5	L1	chr12L1M544635700	ProperStrand	1	chr12	44280982	44281082	LINE	L1Md_T	L1	chr12L1Md_T44276259	ProperStrand	1	1	-inf
chr6	47554417	47554500	LTR	MLT1J	MaLR	chr6MLT1J47554258	ProperStrand	1	chr6	47554686	47554706	SINE	B1_Mur1	Alu	chr6B1_Mur147554580	NonProperStrand	1	1	-inf
chr19	7459421	7459556	LTR	RMER4B	ERVK	chr19RMER4B7459456	NonProperStrand	2	chr9	110281298	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	2	-inf
chr9	19657916	19658016	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr8	13417161	13417251	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	2	-inf
chr15	8073020	8073120	protein_coding	Nup155	intron	ENSMUSG00000022142	NonProperStrand	40	chr2	44861491	44861581	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	3	-inf
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	121421799	121421900	protein_coding	Rph3a	intron	ENSMUSG00000029608	NonProperStrand	86	1	-5.3943
chr7	81867640	81867740	DNA	URR1A	MER1_type	chr7URR1A81867539	NonProperStrand	1	chr7	81867414	81867504	LINE	L1MC1	L1	chr7L1MC181867384	NonProperStrand	1	1	-inf
chr2	132251387	132251717	lincRNA	4921508D12Rik	intron	ENSMUSG00000027345	NonProperStrand	28	chr10	80705417	80705465	protein_coding	Zfr2	intron	ENSMUSG00000034949	NonProperStrand	34	1	-14.7154
chr4	141309036	141316642	protein_coding	Dnajc16	utr3	ENSMUSG00000040697	NonProperStrand	24	chr4	141308944	141309034	protein_coding	Agmat	intron	ENSMUSG00000040706	ProperStrand	58	3	-inf
chr13	68447756	68447846	LTR	ORR1A3	MaLR	chr13ORR1A368447733	NonProperStrand	1	chr12	99896324	99896424	protein_coding	Spata7	intron	ENSMUSG00000021007	ProperStrand	45	1	-inf
chr18	34226754	34226833	LTR	ORR1A2	MaLR	chr18ORR1A234226527	ProperStrand	3	chr18	34224809	34224833	SINE	ID_B1	B4	chr18ID_B134224741	NonProperStrand	1	1	-inf
chr17	70792614	70792634	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr13	6589457	6589591	protein_coding	Pfkp	intron	ENSMUSG00000021196	NonProperStrand	3	1	-12.5470
chr17	39846899	39846989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	15038420	15038520	SINE	B4	B4	chr8B415038388	ProperStrand	1	1	-inf
chr2	174416166	174416256	LINE	L1MD2	L1	chr2L1MD2174416149	NonProperStrand	4	chr2	174416306	174416407	SINE	B1F2	Alu	chr2B1F2174416316	NonProperStrand	4	4	-inf
chrX	4136308	4136358	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr5	73101113	73101217	protein_coding	Txk	intron	ENSMUSG00000054892	ProperStrand	40	1	-13.6132
chr17	39847428	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	38798997	38799324	protein_coding	Plce1	intron	ENSMUSG00000024998	NonProperStrand	28	6	-6.1860
chr1	156022345	156023162	Low_complexity	CT-rich	Low_complexity	chr1CT-rich156022329	NonProperStrand	1	chr18	63904134	63904193	protein_coding	Wdr7	intron	ENSMUSG00000040560	ProperStrand	39	1	-inf
chr5	114851974	114852002	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr11	74905452	74905492	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-7.3965
chrX	73776308	73776408	LINE	L1VL4	L1	chrXL1VL473774719	NonProperStrand	1	chr16	17040759	17040849	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	1	-inf
chr19	3552248	3552333	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	chr4	107181223	107181256	protein_coding	Glis1	intron	ENSMUSG00000034762	ProperStrand	30	1	-10.8817
chr17	39847847	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	20363959	20364019	lincRNA	Gm17523	intron	ENSMUSG00000092119	NonProperStrand	3	1	-4.3512
chr17	39845520	39845592	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	53065636	53065698	protein_coding	Arl6ip6	intron	ENSMUSG00000026960	ProperStrand	14	1	-4.9353
chr17	39846850	39846980	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	22868715	22879477	protein_coding	Dnajb11	intron	ENSMUSG00000004460	ProperStrand	6	2	-5.1926
chr13	76002080	76002210	LTR	RLTR10	ERVK	chr13RLTR1076001842	NonProperStrand	1	chr17	39847695	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	100385406	100385439	LINE	L1Md_T	L1	chr12L1Md_T100380215	ProperStrand	4	chr17	39846660	39846724	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr14	37399293	37399383	LTR	LTR16A	ERVL	chr14LTR16A37399307	NonProperStrand	1	chr7	103550786	103550886	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr16	32900623	32902511	protein_coding-noncoding	Fyttd1	utr5	ENSMUSG00000022800	ProperStrand	2	chr16	32900760	32905615	protein_coding	Fyttd1	intron	ENSMUSG00000022800	ProperStrand	23	2	-inf
chr14	18501706	18501806	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr18	35602985	35603075	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-6.3700
chr1	34087801	34087843	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr7	96298427	96298459	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-3.7774
chr1	122357166	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr5	146261266	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	2	-7.9636
chr17	39847804	39847915	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	76204795	76207819	LTR	MTEb	MaLR	chr5MTEb76204737	ProperStrand	1	1	-inf
chr11	79738262	79738281	LTR	RLTR18	ERVK	chr11RLTR1879738162	NonProperStrand	2	chr12	54696784	54696885	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-17.8206
chr17	39846331	39846422	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	46022074	46022128	SINE	ID_B1	B4	chr17ID_B146022002	ProperStrand	1	1	-inf
chr3	98339696	98339799	LINE	L1_Mm	L1	chr3L1_Mm98339264	ProperStrand	5	chr13	97190561	97190587	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.2290
chr17	39847919	39847959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	104733354	104733460	SINE	B1_Mur3	Alu	chr13B1_Mur3104733379	ProperStrand	1	1	-inf
chr8	42762323	42762421	SINE	B4A	B4	chr8B4A42762316	NonProperStrand	1	chr8	42762523	42762613	SINE	RSINE1	B4	chr8RSINE142762544	ProperStrand	1	1	-inf
chr11	33440284	33440355	SINE	B1_Mur2	Alu	chr11B1_Mur233440256	NonProperStrand	1	chr11	33415204	33415294	SINE	B2_Mm2	B2	chr11B2_Mm233415191	ProperStrand	1	1	-inf
chr7	109974379	109974469	LINE	L1_Mur1	L1	chr7L1_Mur1109974117	ProperStrand	1	chr6	17664252	17664352	protein_coding	St7	intron	ENSMUSG00000029534	ProperStrand	40	1	-inf
chr14	106696469	106696488	LINE	L1Md_F2	L1	chr14L1Md_F2106693986	ProperStrand	2	chr17	39847870	39847991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr5	146261005	146261048	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	167063477	167063557	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-4.4853
chr11	119192354	119192387	protein_coding	Card14	intron	ENSMUSG00000013483	NonProperStrand	31	chr12	112152747	112152781	protein_coding	Tecpr2	intron	ENSMUSG00000021275	ProperStrand	75	1	-12.9094
chr15	78719883	78719903	protein_coding	Gga1	intron	ENSMUSG00000033128	ProperStrand	1	chr12	85844345	85844475	protein_coding	Lin52	intron	ENSMUSG00000085793	ProperStrand	29	1	-inf
chr11	21353041	21353079	LINE	Lx3B	L1	chr11Lx3B21352924	NonProperStrand	3	chr14	77473731	77473797	protein_coding	Ccdc122	intron	ENSMUSG00000034795	ProperStrand	6	1	-inf
chr7	81344374	81344926	LTR	MT2A	ERVL	chr7MT2A81344415	NonProperStrand	8	chr7	81344921	81345217	LTR	ORR1D1	MaLR	chr7ORR1D181344928	ProperStrand	6	4	-inf
chr2	18963530	18963647	LINE	L1VL2	L1	chr2L1VL218960220	NonProperStrand	8	chr17	39847210	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr5	134360440	134360540	Low_complexity	GA-rich	Low_complexity	chr5GA-rich134360451	NonProperStrand	2	chr5	134360593	134360683	SINE	B3A	B2	chr5B3A134360554	ProperStrand	2	2	-inf
chr4	43584543	43584633	protein_coding	Gba2	intron	ENSMUSG00000028467	NonProperStrand	27	chr15	35519978	35520078	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-12.1163
chr8	46739746	46739764	protein_coding	Sorbs2	intron	ENSMUSG00000031626	NonProperStrand	14	chr2	5379289	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	NonProperStrand	14	1	-17.7319
chr17	25262392	25262453	Simple_repeat	(GGAGAA)n	Simple_repeat	chr17(GGAGAA)n25262378	NonProperStrand	6	chr18	65600168	65600216	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	1	-14.0434
chr1	176933622	176933722	LINE	Lx8	L1	chr1Lx8176933558	ProperStrand	1	chr1	176721623	176721713	protein_coding	Fmn2	intron	ENSMUSG00000028354	NonProperStrand	16	1	-inf
chr17	4082098	4082262	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr10	27819087	27820035	protein_coding	Ptprk	intron	ENSMUSG00000019889	NonProperStrand	21	8	-21.1553
chr5	121823510	121823571	protein_coding-noncoding	Trafd1	utr3	ENSMUSG00000042726	NonProperStrand	4	chr5	121818318	121818466	protein_coding	Gm15800	utr3	ENSMUSG00000042744	ProperStrand	172	1	-15.5964
chr17	39846764	39846807	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	24352268	24352301	lincRNA	BC028777	intron	ENSMUSG00000085185	ProperStrand	1	1	-inf
chr9	123461858	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	98931809	98931991	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	2	-3.2439
chr5	108078910	108078962	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	chr7	57592819	57592871	protein_coding	Nell1	intron	ENSMUSG00000055409	ProperStrand	40	2	-18.9983
chr12	31627394	31627494	protein_coding-noncoding	Sh3yl1	utr5	ENSMUSG00000020669	NonProperStrand	1	chr12	31627819	31627909	protein_coding	Sh3yl1	intron	ENSMUSG00000020669	NonProperStrand	18	1	-inf
chr17	24594287	24594377	SINE	B2_Mm2	B2	chr17B2_Mm224594219	NonProperStrand	1	chr17	24594493	24594594	SINE	B3A	B2	chr17B3A24594409	ProperStrand	1	1	-inf
chr19	9872479	9872608	LINE	Lx2A1	L1	chr19Lx2A19871633	NonProperStrand	14	chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-4.3574
chr9	110166664	110166754	LTR	MLT1B	MaLR	chr9MLT1B110166627	NonProperStrand	3	chr9	110166796	110166896	SINE	PB1D10	Alu	chr9PB1D10110166786	ProperStrand	3	3	-inf
chr6	3200792	3200915	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	44160391	44160452	protein_coding	Naa50	utr3	ENSMUSG00000022698	ProperStrand	41	1	-3.5873
chr6	3201434	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	63497833	63497861	protein_coding	Oca2	intron	ENSMUSG00000030450	ProperStrand	24	1	-4.6059
chr15	76327612	76329061	protein_coding	Hsf1	intron	ENSMUSG00000022556	ProperStrand	4	chr7	126761448	126761476	protein_coding	Acsm1	intron	ENSMUSG00000033533	ProperStrand	43	1	-18.6637
chr17	34508850	34513645	SINE	B1_Mur4	Alu	chr17B1_Mur434508766	NonProperStrand	1	chr17	34540742	34540832	protein_coding	BC051142	intron	ENSMUSG00000057246	NonProperStrand	20	1	-inf
chr7	130723922	130724024	LTR	ORR1A4	MaLR	chr7ORR1A4130723804	NonProperStrand	1	chr7	130723715	130723805	Other	RMER1A	Other	chr7RMER1A130722938	ProperStrand	1	1	-inf
chr19	7079738	7079837	protein_coding	Fermt3	intron	ENSMUSG00000024965	NonProperStrand	49	chr9	78478543	78478597	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-7.9119
chr14	55839613	55839643	LINE	L1ME3B	L1	chr14L1ME3B55839416	ProperStrand	1	chr4	115811461	115811481	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	1	-inf
chr9	58231863	58231928	LINE	L1MEf	L1	chr9L1MEf58231828	ProperStrand	1	chr9	17987812	17987833	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	1	-inf
chr11	20077194	20077216	SINE	B2_Mm2	B2	chr11B2_Mm220077195	ProperStrand	1	chr1	180577645	180579223	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	1	-inf
chr19	6004882	6004930	protein_coding	Capn1	intron	ENSMUSG00000024942	ProperStrand	8	chr19	23220301	23220359	protein_coding	Klf9	intron	ENSMUSG00000033863	NonProperStrand	6	1	-inf
chr5	146261177	146261203	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	45516559	45516621	protein_coding	Btrc	intron	ENSMUSG00000025217	ProperStrand	59	1	-5.0953
chr9	114556124	114556218	LTR	LTR86C	ERVL	chr9LTR86C114556140	ProperStrand	2	chr9	114555726	114555780	LTR	MTD	MaLR	chr9MTD114555623	NonProperStrand	6	2	-inf
chr1	106001909	106001993	LINE	Lx	L1	chr1Lx106001811	ProperStrand	1	chr1	106002062	106002112	LINE	Lx	L1	chr1Lx106002073	ProperStrand	3	1	-inf
chr1	58648393	58648493	protein_coding	Ndufb3	intron	ENSMUSG00000026032	ProperStrand	1	chr6	51483280	51483370	protein_coding	Snx10	intron	ENSMUSG00000038301	ProperStrand	60	1	-inf
chr14	99960609	99960699	LINE	L1M2	L1	chr14L1M299960589	NonProperStrand	4	chr14	99960481	99960581	LTR	ORR1A1	MaLR	chr14ORR1A199960267	NonProperStrand	2	1	-20.9262
chr7	96227446	96227547	LTR	RLTR11A	ERVK	chr7RLTR11A96227461	ProperStrand	1	chr7	96227390	96227481	LTR	RLTR11B	ERVK	chr7RLTR11B96227134	NonProperStrand	1	1	-inf
chr17	39847257	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	135765805	135765835	SINE	B4A	B4	chr1B4A135765785	ProperStrand	1	1	-inf
chr17	35766393	35766493	protein_coding	Sfta2	intron	ENSMUSG00000090509	NonProperStrand	2	chr7	92462852	92462942	pseudogene	Vmn2r-ps69	.	ENSMUSG00000090773	ProperStrand	2	1	-19.8939
chr8	67202127	67202217	protein_coding-noncoding	Sc4mol	utr3	ENSMUSG00000031604	NonProperStrand	1	chr8	67202465	67202565	protein_coding	Sc4mol	intron	ENSMUSG00000031604	NonProperStrand	2	1	-inf
chr1	179305695	179305780	LINE	Lx8	L1	chr1Lx8179305083	NonProperStrand	2	chr17	39846669	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chrX	44938896	44938986	LTR	RMER6A	ERVK	chrXRMER6A44938920	NonProperStrand	1	chrX	44939228	44939328	pseudogene	Gm14608	.	ENSMUSG00000084348	ProperStrand	1	1	-inf
chr15	79604964	79605054	protein_coding-noncoding	Dnalc4	utr3	ENSMUSG00000022420	ProperStrand	8	chr15	79604865	79604967	protein_coding	Dnalc4	utr5	ENSMUSG00000022420	ProperStrand	15	8	-inf
chr9	120573723	120573744	LTR	MTE2b	MaLR	chr9MTE2b120573676	NonProperStrand	9	chr1	72226304	72226427	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-15.2370
chr16	15718267	15718288	protein_coding	Prkdc	intron	ENSMUSG00000022672	ProperStrand	42	chr13	44869570	44869628	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.1817
chr11	35954326	35954457	protein_coding-noncoding	Odz2	utr3	ENSMUSG00000049336	ProperStrand	6	chr2	146299473	146299492	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	NonProperStrand	19	1	-19.0482
chr1	122357177	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr9	109100101	109100181	SINE	B1_Mur4	Alu	chr9B1_Mur4109100065	NonProperStrand	1	1	-inf
chr7	80100821	80103134	LINE	L1Md_F2	L1	chr7L1Md_F280100686	NonProperStrand	1	chr17	39846843	39846933	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	79860883	79860916	protein_coding	Wbp4	utr3	ENSMUSG00000022023	NonProperStrand	30	chr2	131919207	131919230	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-12.8715
chr16	70600078	70600178	LINE	Lx8	L1	chr16Lx870599700	ProperStrand	1	chr16	70600401	70600491	LTR	RMER15	ERVL	chr16RMER1570600400	NonProperStrand	1	1	-inf
chr6	134937446	134937545	SINE	B3A	B2	chr6B3A134937446	ProperStrand	1	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-inf
chr1	91987550	91991486	protein_coding	Iqca	intron	ENSMUSG00000026301	ProperStrand	175	chr4	138309359	138309390	protein_coding	Pla2g2f	intron	ENSMUSG00000028749	NonProperStrand	14	1	-12.8375
chr9	72738305	72738398	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	chr8	18772537	18772596	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-3.6611
chr17	39848216	39848259	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	49011235	49011332	SINE	B2_Mm2	B2	chr9B2_Mm249011224	NonProperStrand	1	1	-inf
chr13	16188139	16188239	LINE	L1_Mm	L1	chr13L1_Mm16188141	NonProperStrand	1	chr13	16188377	16188467	LINE	L1_Mm	L1	chr13L1_Mm16188357	ProperStrand	1	1	-inf
chr14	65034543	65034628	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.7268
chr17	70963683	70963780	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	71905829	71905881	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-4.5745
chr17	64616477	64616495	SINE	B4	B4	chr17B464616244	ProperStrand	2	chr11	95343519	95343547	protein_coding	Spop	intron	ENSMUSG00000057522	ProperStrand	38	2	-inf
chr14	67058883	67058953	DNA	Charlie7	MER1_type	chr14Charlie767058819	NonProperStrand	1	chr2	5379263	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr11	120121033	120121052	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	136	chr2	127254619	127254749	protein_coding	Gpat2	intron	ENSMUSG00000046338	ProperStrand	9	1	-14.2695
chr15	81711682	81712047	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	chr7	141984950	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-9.5913
chr17	39846415	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	49772516	49772586	LTR	MT2A	ERVL	chr9MT2A49772271	ProperStrand	1	1	-inf
chr4	55880826	55880916	LINE	L1Md_F2	L1	chr4L1Md_F255880606	ProperStrand	2	chr5	37454133	37454233	protein_coding	Jakmip1	intron	ENSMUSG00000063646	ProperStrand	1	1	-inf
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr14	7930788	7930866	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-9.8084
chr15	98856377	98856653	SINE	B2_Mm2	B2	chr15B2_Mm298856612	ProperStrand	1	chr15	98861118	98861604	protein_coding	Tuba1c	intron	ENSMUSG00000043091	NonProperStrand	30	1	-inf
chr2	22744837	22744913	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	35171209	35171227	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-3.7527
chr12	40410732	40410832	DNA	MER45C	Tip100	chr12MER45C40410635	NonProperStrand	6	chr2	101785728	101785818	LTR	RLTR11A	ERVK	chr2RLTR11A101785642	ProperStrand	1	1	-inf
chr17	70771390	70771446	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr13	103819679	103819726	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	1	-6.7424
chr8	12974640	12974730	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	chr15	86194887	86194987	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-5.4398
chr7	47188330	47188402	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	chr13	95197885	95197954	protein_coding	Ap3b1	intron	ENSMUSG00000021686	NonProperStrand	13	1	-15.5544
chr13	55759092	55759166	protein_coding	Ddx46	intron	ENSMUSG00000021500	ProperStrand	21	chr13	24753662	24756600	protein_coding	Fam65b	intron	ENSMUSG00000036006	NonProperStrand	42	1	-14.8752
chr12	110616743	110616819	LTR	MLT1A0	MaLR	chr12MLT1A0110616583	ProperStrand	6	chr2	102829380	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-14.6462
chr17	39847870	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	155885276	155885299	SINE	RSINE1	B4	chr2RSINE1155885254	NonProperStrand	3	1	-4.3512
chr17	39843621	39843711	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	82801633	82801733	protein_coding	Slfn9	exon	ENSMUSG00000069793	NonProperStrand	14	1	-5.3047
chr4	132310727	132310761	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr5	136932949	136932996	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	113	1	-8.4538
chr2	22744838	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr13	97190550	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	5	-5.2431
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr2	163074749	163075653	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-8.1967
chr6	5495145	5495235	LINE	L1_Mm	L1	chr6L1_Mm5495072	NonProperStrand	4	chr6	5494905	5495005	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n5494915	NonProperStrand	1	1	-inf
chr2	22902981	22903081	LINE	Lx5	L1	chr2Lx522902986	NonProperStrand	2	chr2	22902895	22902985	SINE	B3	B2	chr2B322902778	NonProperStrand	2	2	-inf
chr12	67665410	67665472	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr2	5379277	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0024
chr10	39159559	39159659	protein_coding	Fyn	intron	ENSMUSG00000019843	ProperStrand	12	chr12	3691641	3691731	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	1	-13.8527
chr13	73510858	73510900	LTR	MLT1F1	MaLR	chr13MLT1F173510745	NonProperStrand	4	chr17	39847621	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr12	80886206	80886261	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	chr8	122487693	122487759	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	3	-9.9382
chr9	15013310	15013384	LINE	L2	L2	chr9L215013305	NonProperStrand	1	chr2	20693047	20693080	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-inf
chr5	146261025	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	57958351	57958367	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	1	-4.8783
chr5	18048014	18048030	LINE	L1Md_A	L1	chr5L1Md_A18042521	NonProperStrand	1	chr17	39847252	39847362	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr9	123461822	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr9	110381151	110381223	protein_coding	Kif9	intron	ENSMUSG00000032489	ProperStrand	10	1	-4.3847
chr17	39846759	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	105888665	105889105	LTR	MTEa	MaLR	chr8MTEa105888441	ProperStrand	2	1	-5.3533
chr19	23900062	23900146	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	chr13	113990381	113990433	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-6.4414
chr3	153533468	153533530	protein_coding	Msh4	intron	ENSMUSG00000005493	ProperStrand	30	chr5	122174950	122174986	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	1	-12.0150
chr8	86022635	86022719	LTR	MYSERV16_I-int	ERVK	chr8MYSERV16_I-int86021989	NonProperStrand	1	chr8	86021859	86021905	LTR	RLTR11A	ERVK	chr8RLTR11A86021435	NonProperStrand	2	1	-inf
chr2	177828321	177828411	LINE	Lx	L1	chr2Lx177828262	ProperStrand	1	chr2	177828530	177828630	Simple_repeat	(GAAA)n	Simple_repeat	chr2(GAAA)n177828461	ProperStrand	1	1	-inf
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	93996888	93996998	lincRNA	B230206L02Rik	intron	ENSMUSG00000086003	ProperStrand	4	1	-3.7035
chr17	39847863	39847908	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	115544707	115547888	SINE	B1_Mur1	Alu	chr6B1_Mur1115547824	NonProperStrand	1	1	-inf
chr4	139480211	139480262	lincRNA	Gm13028	intron	ENSMUSG00000087628	ProperStrand	21	chr17	5180536	5180607	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-10.6732
chr11	59214807	59214833	LTR	MLT1E3	MaLR	chr11MLT1E359214750	NonProperStrand	1	chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr11	109011789	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	67119857	67119873	protein_coding	Myh8	intron	ENSMUSG00000055775	ProperStrand	10	1	-9.7335
chr4	136792331	136792431	SINE	ID_B1	B4	chr4ID_B1136792207	NonProperStrand	1	chr4	136792434	136792524	Simple_repeat	(TAGA)n	Simple_repeat	chr4(TAGA)n136792409	NonProperStrand	1	1	-inf
chr3	107681721	107681742	protein_coding	Eps8l3	intron	ENSMUSG00000040600	NonProperStrand	14	chr2	156737168	156737224	pseudogene	Gm14278	.	ENSMUSG00000080880	NonProperStrand	97	1	-14.0208
chr18	75009589	75009687	LTR	RMER17C	ERVK	chr18RMER17C75009612	NonProperStrand	2	chr19	55436621	55436670	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	1	-16.4521
chr6	92240269	92240369	LINE	L1_Mus1	L1	chr6L1_Mus192240193	NonProperStrand	1	chr3	32750531	32750589	protein_coding	Usp13	intron	ENSMUSG00000056900	ProperStrand	29	1	-inf
chr7	110052788	110052890	LINE	Lx8	L1	chr7Lx8110052778	ProperStrand	1	chr11	35081356	35081395	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-inf
chr8	25825949	25826039	protein_coding	Adam3	intron	ENSMUSG00000031553	ProperStrand	67	chr9	44113113	44113213	protein_coding	Hinfp	intron	ENSMUSG00000032119	ProperStrand	28	4	-20.8618
chr5	146261024	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	77891612	77891687	protein_coding	Eral1	intron	ENSMUSG00000020832	ProperStrand	6	1	-9.7631
chr5	26918854	26918900	LTR	RLTR17	ERVK	chr5RLTR1726918639	NonProperStrand	1	chr7	72108721	72108784	protein_coding	Fam189a1	intron	ENSMUSG00000030518	ProperStrand	57	1	-inf
chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr9	123461820	123462039	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-3.2449
chr7	54872976	54873066	LTR	IAPEz-int	ERVK	chr7IAPEz-int54871834	ProperStrand	2	chr7	54871682	54871782	LTR	IAPLTR2b	ERVK	chr7IAPLTR2b54871529	ProperStrand	1	1	-inf
chr13	55700105	55700182	SINE	B2_Mm2	B2	chr13B2_Mm255699983	ProperStrand	1	chr13	55700482	55700531	SINE	B2_Mm2	B2	chr13B2_Mm255700494	ProperStrand	2	1	-inf
chr10	76892599	76961783	LINE	L1M5	L1	chr10L1M576892578	ProperStrand	7	chr17	39847323	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr5	36795124	36795185	lincRNA	2210406O10Rik	intron	ENSMUSG00000039563	ProperStrand	73	chr9	118674951	118674983	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.5862
chr7	130627381	130627459	protein_coding	Zkscan2	intron	ENSMUSG00000030757	NonProperStrand	48	chr1	133658774	133658850	protein_coding	Slc26a9	intron	ENSMUSG00000042268	NonProperStrand	64	1	-12.3426
chr10	78305739	78305799	LINE	L1VL2	L1	chr10L1VL278303588	NonProperStrand	5	chr17	39847107	39847189	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr10	40258556	40258646	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	69925275	69925375	protein_coding	Cdk5rap2	intron	ENSMUSG00000039298	ProperStrand	5	1	-10.4713
chr3	94886798	94886888	protein_coding-noncoding	Pip5k1a	utr3	ENSMUSG00000028126	ProperStrand	6	chr3	94886538	94886638	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	ProperStrand	13	4	-inf
chr19	57000328	57000424	protein_coding	Afap1l2	intron	ENSMUSG00000025083	ProperStrand	11	chr13	97190573	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.5318
chr4	8579441	8579480	Low_complexity	polypurine	Low_complexity	chr4polypurine8579430	ProperStrand	1	chr4	8579383	8579442	Simple_repeat	(GAA)n	Simple_repeat	chr4(GAA)n8579291	ProperStrand	1	1	-inf
chr4	155260865	155260882	protein_coding	Cpsf3l	intron	ENSMUSG00000029034	NonProperStrand	4	chr17	74602487	74602521	protein_coding	Memo1	intron	ENSMUSG00000058704	NonProperStrand	64	1	-17.6295
chr15	96616831	96616865	LINE	L1_Mus2	L1	chr15L1_Mus296616187	ProperStrand	3	chr15	96617142	96617186	SINE	B1_Mus1	Alu	chr15B1_Mus196617089	ProperStrand	3	3	-inf
chr10	30811139	30811215	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-9.0545
chr17	39847207	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	6430221	6431887	protein_coding	Dynlt1b	intron	ENSMUSG00000091454	ProperStrand	3	1	-5.4882
chr1	180607822	180607934	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.7551
chr4	14870136	14870213	antisense	Gm11837	.	ENSMUSG00000086587	ProperStrand	8	chr15	10661047	10661115	lincRNA	4930556M19Rik	intron	ENSMUSG00000092044	NonProperStrand	161	1	-14.1842
chr3	21788898	21788988	LINE	L1_Mus1	L1	chr3L1_Mus121788923	ProperStrand	1	chr3	21788701	21788801	LINE	Lx8	L1	chr3Lx821788473	NonProperStrand	1	1	-inf
chr4	105163438	105163528	LINE	L1_Rod	L1	chr4L1_Rod105163324	NonProperStrand	4	chr4	105163525	105163625	LINE	L1_Rod	L1	chr4L1_Rod105163539	NonProperStrand	4	4	-inf
chr9	123461832	123461876	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr6	72293874	72293908	protein_coding	Usp39	intron	ENSMUSG00000056305	ProperStrand	2	1	-8.0983
chr17	93118504	93118594	LINE	Lx4B	L1	chr17Lx4B93118417	NonProperStrand	1	chr17	93118732	93118832	SINE	B4A	B4	chr17B4A93118693	NonProperStrand	1	1	-inf
chrX	101417459	101417526	LINE	Lx7	L1	chrXLx7101414895	ProperStrand	6	chr15	12329165	12329233	protein_coding	Pdzd2	intron	ENSMUSG00000022197	NonProperStrand	64	1	-16.6717
chr6	47778246	47778339	protein_coding	Zfp786	intron	ENSMUSG00000051499	ProperStrand	6	chr5	32057523	32057567	protein_coding	Bre	intron	ENSMUSG00000052139	ProperStrand	76	1	-16.3381
chr17	39847493	39847603	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	129186005	129186021	lincRNA	2310001H17Rik	intron	ENSMUSG00000085930	ProperStrand	2	1	-5.4040
chr17	39847188	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	20420034	20420050	protein_coding	Vmn2r106	intron	ENSMUSG00000091656	NonProperStrand	1	1	-inf
chr17	39843843	39843899	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr6	40369913	40370015	protein_coding	E330009J07Rik	intron	ENSMUSG00000037172	NonProperStrand	15	1	-5.6278
chr17	39848100	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	35660105	35660139	protein_coding	Cchcr1	intron	ENSMUSG00000040312	NonProperStrand	23	1	-3.1127
chr7	36711926	36712016	SINE	B3	B2	chr7B336711949	NonProperStrand	1	chr7	36712149	36712249	SINE	PB1	Alu	chr7PB136712143	ProperStrand	1	1	-inf
chr3	86021436	86021536	LINE	L1Md_F2	L1	chr3L1Md_F286021465	NonProperStrand	1	chr3	86021350	86021440	SINE	ID4_	ID	chr3ID4_86021358	NonProperStrand	1	1	-inf
chr9	40804746	40804839	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	2	-6.9176
chr12	17925847	17925906	LTR	ETnERV3-int	ERVK	chr12ETnERV3-int17925821	NonProperStrand	2	chr13	44869598	44869681	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr2	104482621	104482711	protein_coding	Cstf3	intron	ENSMUSG00000027176	ProperStrand	1	chr2	154889137	154889237	protein_coding	Ahcy	intron	ENSMUSG00000027597	ProperStrand	11	1	-inf
chr15	13620442	13620542	LINE	L1Md_T	L1	chr15L1Md_T13617463	NonProperStrand	1	chr15	13620762	13620852	LINE	L1Md_T	L1	chr15L1Md_T13620588	NonProperStrand	1	1	-inf
chr14	56892478	56892569	SINE	B2_Mm1a	B2	chr14B2_Mm1a56892399	NonProperStrand	3	chr14	56892568	56892668	SINE	B4A	B4	chr14B4A56892578	ProperStrand	3	3	-inf
chr4	108416761	108416861	protein_coding	Zfyve9	intron	ENSMUSG00000034557	NonProperStrand	18	chr7	64423174	64423264	protein_coding	Gabrg3	intron	ENSMUSG00000055026	ProperStrand	23	1	-16.3995
chr17	39846701	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	33792632	33792662	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n33792634	NonProperStrand	1	1	-inf
chr1	134780478	134780532	protein_coding	Lrrn2	intron	ENSMUSG00000026443	NonProperStrand	31	chr3	9496993	9497069	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-7.8124
chr17	39847210	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	24529138	24532951	LTR	ORR1D1	MaLR	chr4ORR1D124532711	ProperStrand	1	1	-inf
chr17	39846701	39846766	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	128713317	128713940	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n128713174	ProperStrand	2	2	-inf
chr11	120563220	120563345	antisense	Gm17178	.	ENSMUSG00000090758	ProperStrand	40	chr9	50521851	50521879	protein_coding	Dixdc1	intron	ENSMUSG00000032064	ProperStrand	17	1	-15.4059
chr5	106461163	106461182	SINE	B1_Mus1	Alu	chr5B1_Mus1106461126	NonProperStrand	2	chr2	48993439	48993560	protein_coding	Mbd5	intron	ENSMUSG00000036792	ProperStrand	50	1	-20.0295
chr8	73345279	73345369	SINE	ID_B1	B4	chr8ID_B173345300	NonProperStrand	1	chr16	20158175	20158275	protein_coding	Yeats2	intron	ENSMUSG00000041215	ProperStrand	71	1	-inf
chr9	37515349	37515405	LINE	L1VL4	L1	chr9L1VL437515049	NonProperStrand	5	chr9	37491670	37491736	LINE	Lx4A	L1	chr9Lx4A37490257	NonProperStrand	13	1	-inf
chr11	107650402	107650432	protein_coding	Cacng4	intron	ENSMUSG00000020723	NonProperStrand	72	chr2	20652588	20652689	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-8.2813
chr17	21575256	21575346	LTR	RMER15	ERVL	chr17RMER1521575213	NonProperStrand	1	chr17	21574976	21575076	LTR	RMER6B	ERVK	chr17RMER6B21574787	ProperStrand	1	1	-inf
chr16	18407425	18407515	protein_coding	Comt	utr3	ENSMUSG00000000326	NonProperStrand	8	chr7	99934342	99934442	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	3	-21.7551
chr8	54170869	54170973	LINE	Lx3A	L1	chr8Lx3A54170609	ProperStrand	1	chr17	39847106	39847156	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr7	46495279	46495362	LTR	ORR1A2-int	MaLR	chr7ORR1A2-int46494449	ProperStrand	1	chr7	46494302	46494339	LTR	ORR1A2	MaLR	chr7ORR1A246494130	ProperStrand	7	1	-inf
chr2	118472317	118472430	LTR	RMER19B	ERVK	chr2RMER19B118472322	NonProperStrand	3	chr7	25424315	25424353	protein_coding	Lypd3	intron	ENSMUSG00000057454	ProperStrand	10	3	-inf
chr17	39846461	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	67169085	67169114	LTR	ORR1B1-int	MaLR	chr6ORR1B1-int67168854	ProperStrand	1	1	-inf
chr13	44869597	44869674	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr14	51985855	51985925	protein_coding	Gm7247	intron	ENSMUSG00000068399	ProperStrand	12	1	-7.6975
chr14	46827903	46827993	LINE	Lx8	L1	chr14Lx846827784	NonProperStrand	1	chr14	46828132	46828231	LINE	Lx8	L1	chr14Lx846828130	ProperStrand	1	1	-inf
chr10	82402756	82402856	LTR	IAPEz-int	ERVK	chr10IAPEz-int82402565	ProperStrand	1	chr16	16313877	16313967	protein_coding	Dnm1l	utr3	ENSMUSG00000022789	ProperStrand	30	1	-inf
chr5	146260993	146261024	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	47223653	47223674	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	49	1	-5.4573
chr17	39848617	39848707	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chrX	85144598	85144698	misc_RNA	AL844869.1	.	ENSMUSG00000093056	NonProperStrand	1	1	-inf
chr9	21139477	21139548	SINE	PB1D7	Alu	chr9PB1D721139442	ProperStrand	1	chr7	3652103	3653200	protein_coding	Tsen34	intron	ENSMUSG00000035585	ProperStrand	35	1	-inf
chr3	133475360	133475389	LINE	L1VL1	L1	chr3L1VL1133474115	ProperStrand	2	chr9	123461835	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr11	62336057	62336120	LTR	ORR1D1	MaLR	chr11ORR1D162336028	NonProperStrand	1	chr11	62336909	62336982	antisense	Gm12949	.	ENSMUSG00000086636	NonProperStrand	1	1	-inf
chr4	124677927	124678005	protein_coding	Rspo1	intron	ENSMUSG00000028871	NonProperStrand	5	chr9	22586698	22586750	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	126	1	-15.7035
chr10	83747914	83748014	LTR	ORR1A2	MaLR	chr10ORR1A283747897	ProperStrand	13	chr12	103568767	103568857	protein_coding	Rin3	intron	ENSMUSG00000044456	ProperStrand	7	1	-19.7600
chr4	149491225	149491297	antisense	Gm13093	.	ENSMUSG00000087094	NonProperStrand	4	chrX	56716278	56716298	protein_coding	Fgf13	intron	ENSMUSG00000031137	NonProperStrand	55	1	-17.8071
chr9	66916191	66916281	LTR	ORR1A2	MaLR	chr9ORR1A266915913	ProperStrand	1	chr9	66916443	66916543	SINE	B4A	B4	chr9B4A66916450	NonProperStrand	1	1	-inf
chr12	91721043	91721078	LINE	L1Md_A	L1	chr12L1Md_A91720390	NonProperStrand	1	chr13	114117768	114117833	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	1	-inf
chr13	9834326	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr12	55072809	55072875	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	1	-7.4311
chr1	77425578	77425664	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	chr5	123809851	123809929	protein_coding	Bcl7a	utr3	ENSMUSG00000029438	ProperStrand	19	2	-18.0113
chr2	119620437	119620537	SINE	B1_Mur1	Alu	chr2B1_Mur1119620418	ProperStrand	2	chr2	119620329	119620419	SINE	B4	B4	chr2B4119620281	ProperStrand	2	2	-inf
chr2	105680464	105680482	protein_coding	Elp4	intron	ENSMUSG00000027167	NonProperStrand	11	chr7	134902699	134902740	protein_coding	Fbxl19	intron	ENSMUSG00000030811	ProperStrand	91	1	-14.6583
chr10	81182258	81182322	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	chr2	122123770	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.4779
chr17	39846952	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	65987871	65991378	LTR	RMER2	ERV1	chr18RMER265990896	ProperStrand	2	1	-5.3533
chrX	21680558	21680581	LINE	Lx9	L1	chrXLx921680470	ProperStrand	4	chr17	39847249	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr17	39843535	39843559	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	91679879	91680020	protein_coding	Ambra1	intron	ENSMUSG00000040506	NonProperStrand	61	3	-6.6905
chr10	91264694	91264784	LINE	L1M5	L1	chr10L1M591264634	ProperStrand	1	chr10	91265090	91265190	SINE	B1_Mm	Alu	chr10B1_Mm91265037	ProperStrand	1	1	-inf
chr4	101560878	101560966	LTR	RLTR1D	ERV1	chr4RLTR1D101560842	NonProperStrand	2	chr4	101551231	101551255	SINE	ID_B1	B4	chr4ID_B1101551214	NonProperStrand	2	1	-19.8939
chr6	87997231	87997259	SINE	B1_Mur4	Alu	chr6B1_Mur487997219	ProperStrand	15	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-11.9564
chr15	80078396	80078412	protein_coding	Smcr7l	exon	ENSMUSG00000022412	NonProperStrand	429	chr16	58434500	58434582	protein_coding	Dcbld2	intron	ENSMUSG00000035107	ProperStrand	36	1	-9.1144
chr4	42980860	42982548	LTR	MTB_Mm	MaLR	chr4MTB_Mm42980621	NonProperStrand	2	chr11	72206055	72206094	protein_coding	Smtnl2	intron	ENSMUSG00000045667	ProperStrand	26	1	-20.6107
chr4	133681577	133681874	protein_coding-noncoding	Ubxn11	utr5	ENSMUSG00000012126	NonProperStrand	24	chr4	133680936	133681764	protein_coding	Ubxn11	intron	ENSMUSG00000012126	NonProperStrand	37	3	-inf
chr17	39847262	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	30757764	30757788	protein_coding	Tpo	intron	ENSMUSG00000020673	NonProperStrand	3	1	-5.4882
chr17	39847636	39847658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	75911118	75911236	protein_coding	Puf60	intron	ENSMUSG00000002524	NonProperStrand	1	1	-inf
chr1	106017729	106017782	LINE	L1_Mus4	L1	chr1L1_Mus4106017721	NonProperStrand	1	chr13	55774331	55774374	protein_coding	Ddx46	intron	ENSMUSG00000021500	ProperStrand	21	1	-inf
chr3	148245844	148245934	LINE	Lx8	L1	chr3Lx8148245775	NonProperStrand	1	chr10	122566248	122566348	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-inf
chr4	152421217	152421294	LINE	L1MEc	L1	chr4L1MEc152421209	NonProperStrand	1	chr9	101099790	101099836	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	NonProperStrand	66	1	-inf
chr4	123508514	123509819	SINE	B2_Mm2	B2	chr4B2_Mm2123509369	ProperStrand	2	chr5	31078192	31078278	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	1	-17.2167
chr1	167223589	167223630	LTR	MTD	MaLR	chr1MTD167223459	ProperStrand	9	chr7	123328946	123328977	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	1	-13.6417
chr4	63544989	63548674	LINE	L1M2	L1	chr4L1M263548243	NonProperStrand	4	chr4	63544895	63544985	LINE	L1_Mus1	L1	chr4L1_Mus163544803	ProperStrand	6	4	-inf
chr17	39846721	39846782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	98187429	98187495	protein_coding	Neurod2	utr3	ENSMUSG00000038255	ProperStrand	5	1	-3.1907
chr1	100180182	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr2	119874302	119874419	protein_coding	Spnb5	intron	ENSMUSG00000074899	NonProperStrand	17	1	-13.2272
chr4	128618509	128618525	protein_coding	Adc	intron	ENSMUSG00000028789	NonProperStrand	3	chr13	97190601	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr15	41732784	41732864	LTR	ORR1A4-int	MaLR	chr15ORR1A4-int41732463	NonProperStrand	2	chr17	39847812	39847868	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr1	16103213	16103265	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	chr1	62789255	62789297	protein_coding	Nrp2	intron	ENSMUSG00000025969	ProperStrand	116	2	-16.1108
chr1	54406043	54406072	protein_coding	Ccdc150	intron	ENSMUSG00000025983	NonProperStrand	15	chr13	97190568	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.8902
chr14	120324837	120324896	Simple_repeat	(TAA)n	Simple_repeat	chr14(TAA)n120324828	ProperStrand	1	chr12	79747209	79747262	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr9	110281287	110281315	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	117223260	117223278	protein_coding	Eri3	exon	ENSMUSG00000033423	NonProperStrand	110	1	-6.3612
chr8	114544764	114544854	LTR	MT2A	ERVL	chr8MT2A114544629	ProperStrand	2	chr8	114544886	114544986	LTR	MT2A	ERVL	chr8MT2A114544858	ProperStrand	2	2	-inf
chr9	123461793	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	122544556	122544633	protein_coding	Pde5a	intron	ENSMUSG00000053965	NonProperStrand	19	1	-3.1531
chr1	182324126	182324226	protein_coding	Itpkb	intron	ENSMUSG00000038855	NonProperStrand	42	chr7	35025621	35025711	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	NonProperStrand	63	2	-20.1080
chr14	20607154	20607267	protein_coding	Nid2	intron	ENSMUSG00000021806	NonProperStrand	20	chr9	123462132	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chrX	73806334	73806434	LINE	MusHAL1	L1	chrXMusHAL173805764	ProperStrand	2	chr11	3206112	3206202	protein_coding	Patz1	intron	ENSMUSG00000020453	ProperStrand	6	2	-inf
chr14	99984766	99984867	DNA	Tigger7	MER2_type	chr14Tigger799984674	NonProperStrand	5	chr14	99984880	99984970	DNA	Tigger7	MER2_type	chr14Tigger799984906	NonProperStrand	4	3	-inf
chr11	115793837	115793948	protein_coding	Recql5	intron	ENSMUSG00000020752	NonProperStrand	21	chr11	113729657	113750740	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-12.5825
chr14	47706432	47706497	protein_coding	Samd4	intron	ENSMUSG00000021838	ProperStrand	53	chr5	54037226	54037251	protein_coding	Rbpj	exon	ENSMUSG00000039191	ProperStrand	22	1	-14.3098
chr5	122493216	122493314	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	chr1	101725771	101725836	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	NonProperStrand	22	1	-12.2848
chr17	39847031	39847169	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	88364812	88366367	protein_coding	Syncrip	intron	ENSMUSG00000032423	NonProperStrand	2	2	-inf
chr17	39846389	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	162838692	162838711	protein_coding	Ofd1	intron	ENSMUSG00000040586	NonProperStrand	1	1	-inf
chr17	28262020	28262095	SINE	B1_Mur1	Alu	chr17B1_Mur128261997	ProperStrand	1	chr5	136935852	136935917	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	113	1	-inf
chr5	100427131	100427210	LTR	RMER15	ERVL	chr5RMER15100427148	ProperStrand	13	chr15	79151988	79152064	protein_coding	Pla2g6	intron	ENSMUSG00000042632	NonProperStrand	42	1	-15.8852
chr2	22744854	22744889	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	91599318	91600642	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-6.1908
chr11	50883111	50883159	protein_coding	Zfp354a	exon	ENSMUSG00000020364	NonProperStrand	5	chr9	123461873	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	114450717	114450784	LTR	MTB	MaLR	chr5MTB114450422	ProperStrand	1	1	-inf
chr6	82762582	82762672	SINE	ID_B1	B4	chr6ID_B182762549	ProperStrand	4	chr6	82762465	82762565	Simple_repeat	(TTCC)n	Simple_repeat	chr6(TTCC)n82762462	NonProperStrand	4	4	-inf
chr11	103377204	103377261	LTR	RLTR25A	ERVK	chr11RLTR25A103376912	ProperStrand	2	chr17	39847216	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr1	34196041	34197270	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr2	10437377	10437477	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-5.8804
chr17	39847477	39847711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	5864194	5865282	protein_coding	Ykt6	intron	ENSMUSG00000002741	ProperStrand	4	3	-10.8082
chr18	35803770	35803861	SINE	B2_Mm1a	B2	chr18B2_Mm1a35803676	NonProperStrand	1	chr9	123461931	123461973	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847115	39847134	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	134641019	134641038	SINE	MIR	MIR	chr4MIR134640972	ProperStrand	1	1	-inf
chr2	167017839	167019653	lincRNA	1110018N20Rik	exon	ENSMUSG00000085151	ProperStrand	4	chr2	167019661	167019883	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-17.1320
chr2	93199615	93199715	SINE	RSINE1	B4	chr2RSINE193199604	NonProperStrand	2	chr2	93199530	93199620	Simple_repeat	(TATATG)n	Simple_repeat	chr2(TATATG)n93199442	ProperStrand	2	2	-inf
chr18	21211951	21211987	SINE	B1F	Alu	chr18B1F21211950	NonProperStrand	1	chr18	21235950	21236009	protein_coding	Mep1b	intron	ENSMUSG00000024313	NonProperStrand	33	1	-inf
chr11	47931256	47931356	LTR	MTD	MaLR	chr11MTD47931158	NonProperStrand	2	chr11	47931577	47931667	SINE	B3	B2	chr11B347931585	ProperStrand	2	2	-inf
chr7	31096157	31096247	protein_coding-noncoding	Alkbh6	utr5	ENSMUSG00000042831	NonProperStrand	3	chr7	31096051	31096151	protein_coding	Alkbh6	intron	ENSMUSG00000042831	NonProperStrand	4	3	-inf
chr17	39848171	39848261	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	66576538	66576638	SINE	B2_Mm1t	B2	chr5B2_Mm1t66576551	NonProperStrand	2	1	-8.4422
chr12	16467306	16467396	Low_complexity	GA-rich	Low_complexity	chr12GA-rich16467289	NonProperStrand	1	chr12	16467030	16467130	SINE	B4	B4	chr12B416466959	NonProperStrand	1	1	-inf
chr1	89721171	89721248	protein_coding-noncoding	Sag	utr5	ENSMUSG00000056055	ProperStrand	18	chr1	89685080	89685158	protein_coding	Atg16l1	intron	ENSMUSG00000026289	ProperStrand	119	1	-13.0926
chr17	39845857	39845947	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr18	50009470	50009570	protein_coding	Dmxl1	intron	ENSMUSG00000037416	ProperStrand	116	5	-6.3811
chr17	33759275	33759395	LTR	IAPEz-int	ERVK	chr17IAPEz-int33755542	ProperStrand	6	chr12	57112140	57112159	SINE	B4A	B4	chr12B4A57111957	NonProperStrand	5	1	-inf
chr5	143298221	143298272	LTR	RMER17A2	ERVK	chr5RMER17A2143297721	ProperStrand	1	chr2	93992047	93992136	protein_coding	Hsd17b12	intron	ENSMUSG00000027195	ProperStrand	58	1	-inf
chr2	157470033	157470123	DNA	RMER30	MER1_type	chr2RMER30157470023	ProperStrand	4	chr2	157470119	157470219	LTR	ORR1A2	MaLR	chr2ORR1A2157470130	NonProperStrand	5	4	-inf
chr6	3201455	3201542	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	55329798	55329819	protein_coding	Etfa	intron	ENSMUSG00000032314	NonProperStrand	4	1	-8.3508
chr18	63078738	63078756	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr6	3201351	3201501	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-4.1133
chr9	123462079	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	107844084	107844156	protein_coding	Echdc2	intron	ENSMUSG00000028601	ProperStrand	17	1	-3.3592
chr15	73168191	73168223	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr4	132309940	132310060	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-5.1731
chr9	25829589	25829689	LINE	Lx9	L1	chr9Lx925829054	ProperStrand	1	chr2	127076311	127076401	protein_coding	Tmem127	intron	ENSMUSG00000034850	ProperStrand	5	1	-inf
chr17	55288122	55288212	LINE	L1Md_A	L1	chr17L1Md_A55288083	ProperStrand	1	chr17	55288251	55288351	LTR	RLTR11B	ERVK	chr17RLTR11B55288217	ProperStrand	1	1	-inf
chr6	50124535	50124669	protein_coding	Mpp6	intron	ENSMUSG00000038388	ProperStrand	34	chr11	74435731	74435747	protein_coding	E130309D14Rik	intron	ENSMUSG00000069814	NonProperStrand	8	1	-17.2797
chr12	86113223	86113323	protein_coding	Npc2	intron	ENSMUSG00000021242	NonProperStrand	13	chr9	68766600	68766690	protein_coding	Rora	intron	ENSMUSG00000032238	NonProperStrand	32	2	-23.0680
chr4	102792145	102792182	protein_coding	Mier1	intron	ENSMUSG00000028522	ProperStrand	5	chr5	113960579	113961377	protein_coding	Wscd2	intron	ENSMUSG00000063430	NonProperStrand	42	1	-18.0379
chr4	155330227	155330317	protein_coding-noncoding	Ube2j2	utr5	ENSMUSG00000023286	NonProperStrand	3	chr4	155330016	155330116	protein_coding	Ube2j2	intron	ENSMUSG00000023286	NonProperStrand	17	1	-19.8425
chr5	146261267	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	3437688	3437788	protein_coding	Cdk6	intron	ENSMUSG00000040274	ProperStrand	138	1	-6.2263
chr11	3189247	3189337	protein_coding-noncoding	Patz1	utr5	ENSMUSG00000020453	NonProperStrand	1	chr11	3188851	3188950	protein_coding	Patz1	intron	ENSMUSG00000020453	NonProperStrand	7	1	-inf
chr3	98896989	98897079	LINE	L1_Mur3	L1	chr3L1_Mur398896991	NonProperStrand	1	chr3	98897309	98897409	LINE	L1_Mus1	L1	chr3L1_Mus198897191	ProperStrand	1	1	-inf
chr8	103083690	103083780	LINE	Lx2B	L1	chr8Lx2B103083254	NonProperStrand	1	chr8	103083953	103084053	LINE	Lx2B	L1	chr8Lx2B103083868	NonProperStrand	1	1	-inf
chr4	146904646	146904730	SINE	B2_Mm2	B2	chr4B2_Mm2146904589	ProperStrand	1	chr15	35422458	35423174	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-inf
chr4	7769419	7769509	DNA	Tigger7	MER2_type	chr4Tigger77769349	NonProperStrand	1	chr4	7769047	7769147	LTR	RMER15	ERVL	chr4RMER157768987	ProperStrand	1	1	-inf
chr5	138280981	138281011	LINE	L1Md_F2	L1	chr5L1Md_F2138279089	ProperStrand	14	chr17	34897194	34897293	LTR	RLTR1B	ERV1	chr17RLTR1B34896948	NonProperStrand	1	1	-inf
chr17	39847410	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	50420126	50420180	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	24	-8.6819
chr18	34599637	34599727	protein_coding	Pkd2l2	intron	ENSMUSG00000014503	ProperStrand	2	chr8	65774281	65774381	protein_coding	Spock3	intron	ENSMUSG00000054162	NonProperStrand	20	1	-20.4416
chr17	36006449	36006491	protein_coding	Ppp1r18	intron	ENSMUSG00000034595	NonProperStrand	2	chr6	72323553	72323626	protein_coding	Vamp5	intron	ENSMUSG00000073002	ProperStrand	8	1	-23.4058
chr14	19805905	19805969	Other	RMER1B	Other	chr14RMER1B19805526	NonProperStrand	9	chr9	118674951	118675009	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-9.8244
chrX	74330190	74330211	LINE	Lx8	L1	chrXLx874330043	ProperStrand	1	chrX	74329915	74330014	Simple_repeat	(TAGA)n	Simple_repeat	chrX(TAGA)n74329939	ProperStrand	1	1	-inf
chr8	84842648	84842722	DNA	MER5A	MER1_type	chr8MER5A84842646	NonProperStrand	1	chr6	3201467	3201502	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr11	107342256	107342280	protein_coding	Psmd12	intron	ENSMUSG00000020720	NonProperStrand	27	chr11	107343790	107343910	sense_intronic	Gm11722	.	ENSMUSG00000086442	NonProperStrand	1	1	-inf
chr11	60212053	60212123	SINE	B3	B2	chr11B360211960	NonProperStrand	1	chr11	60219203	60219283	protein_coding	Atpaf2	intron	ENSMUSG00000042709	ProperStrand	48	1	-inf
chr17	4082671	4082746	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr6	56873391	56873432	protein_coding	Nt5c3	intron	ENSMUSG00000029780	NonProperStrand	13	1	-10.7670
chr13	55238308	55238402	LTR	MLT1K	MaLR	chr13MLT1K55238300	ProperStrand	1	chr16	37881874	37881935	protein_coding	Lrrc58	utr3	ENSMUSG00000034158	ProperStrand	33	1	-inf
chr14	65059100	65066748	protein_coding	Msra	intron	ENSMUSG00000054733	ProperStrand	122	chr10	89699203	89699224	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-9.0167
chr5	124596144	124596196	protein_coding	Pitpnm2	intron	ENSMUSG00000029406	NonProperStrand	22	chr7	107515801	107515901	protein_coding	Ppme1	intron	ENSMUSG00000030718	NonProperStrand	28	1	-15.6118
chr17	39846456	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	115589053	115589207	SINE	B2_Mm2	B2	chr5B2_Mm2115589059	NonProperStrand	1	1	-inf
chrX	38717225	38717295	LTR	RMER6A	ERVK	chrXRMER6A38716683	ProperStrand	1	chrX	82202646	82202694	protein_coding	Dmd	intron	ENSMUSG00000045103	NonProperStrand	39	1	-inf
chr1	178214177	178214322	LINE	L1Md_A	L1	chr1L1Md_A178212234	ProperStrand	2	chr2	122028883	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	1	-19.8733
chr5	35279622	35279640	DNA	Zaphod	Tip100	chr5Zaphod35279552	ProperStrand	1	chr17	39847660	39847711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	50830406	50830506	LINE	Lx8	L1	chr16Lx850830348	NonProperStrand	1	chr16	50830007	50830097	LTR	MTA_Mm	MaLR	chr16MTA_Mm50829965	NonProperStrand	1	1	-inf
chr7	110206818	110206908	LINE	Lx	L1	chr7Lx110206601	ProperStrand	1	chr7	110206966	110207066	LINE	Lx5	L1	chr7Lx5110206957	NonProperStrand	1	1	-inf
chr2	22744854	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr15	77768944	77769033	LTR	RLTR40	ERVK	chr15RLTR4077768709	NonProperStrand	5	1	-11.9551
chrX	77528384	77528418	LINE	L1_Mus2	L1	chrXL1_Mus277523466	NonProperStrand	7	chr5	32632155	32632208	protein_coding	Plb1	intron	ENSMUSG00000029134	ProperStrand	46	1	-17.0390
chr8	83904341	83904374	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr14	33967614	33967648	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-5.3273
chr5	124461385	124461449	protein_coding	Vps37b	intron	ENSMUSG00000066278	NonProperStrand	26	chr4	98489342	98489382	protein_coding	I0C0044D17Rik	intron	ENSMUSG00000073794	NonProperStrand	3	2	-inf
chr2	3525809	3525843	SINE	B1_Mm	Alu	chr2B1_Mm3525815	ProperStrand	1	chr10	128356028	128356072	protein_coding	Rdh5	intron	ENSMUSG00000025350	NonProperStrand	16	1	-inf
chr8	123102733	123102876	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	chr10	28592850	28595832	protein_coding	Themis	intron	ENSMUSG00000049109	ProperStrand	49	1	-9.8436
chr5	53489861	53489961	LTR	MTD-int	MaLR	chr5MTD-int53489608	ProperStrand	1	chr5	53489512	53489602	LTR	MTD	MaLR	chr5MTD53489241	ProperStrand	1	1	-inf
chr10	64574955	64575045	LINE	L1MCa	L1	chr10L1MCa64574974	ProperStrand	1	chr17	4082099	4082199	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	1	-inf
chr17	39847187	39847214	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	122013823	122013840	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	NonProperStrand	3	1	-5.4882
chr11	106781604	106781694	protein_coding	Smurf2	utr5	ENSMUSG00000018363	ProperStrand	51	chr2	140664601	140664703	protein_coding	Macrod2	intron	ENSMUSG00000068205	ProperStrand	94	1	-11.4476
chr7	46851975	46854053	LTR	MTC	MaLR	chr7MTC46853906	NonProperStrand	44	chr7	46854060	46855047	SINE	B2_Mm1t	B2	chr7B2_Mm1t46854855	ProperStrand	39	13	-inf
chr1	34021876	34021972	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr14	7974219	7974259	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-4.3952
chr6	113147658	113147684	SINE	ID_B1	B4	chr6ID_B1113147609	NonProperStrand	1	chr6	113144011	113147499	protein_coding	Lhfpl4	exon	ENSMUSG00000042873	NonProperStrand	50	1	-inf
chr14	25667372	25667421	LINE	L1Md_F2	L1	chr14L1Md_F225666968	NonProperStrand	1	chr17	39847656	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	38314729	38314854	LTR	RMER10A	ERVL	chr19RMER10A38314452	NonProperStrand	1	chr9	18302833	18302866	protein_coding	Muc16	intron	ENSMUSG00000032134	NonProperStrand	9	1	-inf
chr15	20783199	20783299	LINE	Lx	L1	chr15Lx20782685	NonProperStrand	1	chr15	20783448	20783538	LINE	Lx6	L1	chr15Lx620783425	ProperStrand	1	1	-inf
chr5	146261180	146261196	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	20656637	20656938	protein_coding	Psmd2	intron	ENSMUSG00000006998	ProperStrand	34	1	-6.1779
chr3	135445311	135445364	LTR	BGLII	ERVK	chr3BGLII135445096	NonProperStrand	1	chr9	123462038	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	62379795	62379812	LINE	Lx	L1	chr6Lx62379647	ProperStrand	1	chr13	23684556	23684664	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	NonProperStrand	15	1	-inf
chr10	81334336	81334408	LTR	ORR1A2	MaLR	chr10ORR1A281334277	NonProperStrand	1	chr17	39846410	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	116269318	116269418	Low_complexity	CT-rich	Low_complexity	chr7CT-rich116269298	NonProperStrand	10	chr7	116269425	116269515	Simple_repeat	(TTTCC)n	Simple_repeat	chr7(TTTCC)n116269448	NonProperStrand	4	1	-inf
chr1	189659254	189659290	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	103	chr7	133576778	133576855	protein_coding	Rabep2	intron	ENSMUSG00000030727	NonProperStrand	1	1	-inf
chr6	90946127	90946220	Other	RMER1B	Other	chr6RMER1B90945558	NonProperStrand	2	chr6	90983435	90983480	protein_coding	Nup210	intron	ENSMUSG00000030091	ProperStrand	121	1	-18.2003
chr17	80432854	80447020	protein_coding	Hnrpll	intron	ENSMUSG00000024095	ProperStrand	32	chr9	123461876	123462017	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-4.0153
chr12	97819307	97819397	LINE	L1Md_F2	L1	chr12L1Md_F297819222	ProperStrand	1	chr12	98272972	98273072	LINE	Lx5	L1	chr12Lx598272456	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr18	10008766	10008888	protein_coding	Usp14	intron	ENSMUSG00000047879	ProperStrand	29	1	-8.0247
chr11	109011656	109011705	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	58244903	58244977	LINE	Lx5	L1	chr9Lx558244902	NonProperStrand	1	1	-inf
chr18	57547110	57547210	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	chr2	106105752	106105842	protein_coding	Dcdc5	intron	ENSMUSG00000074981	NonProperStrand	4	1	-21.2052
chr4	35249281	35249303	LINE	L1Md_F3	L1	chr4L1Md_F335248548	ProperStrand	1	chr14	10983430	10983449	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-inf
chr6	134889500	134889590	SINE	B3A	B2	chr6B3A134889460	ProperStrand	2	chr6	134889339	134889439	SINE	PB1	Alu	chr6PB1134889332	NonProperStrand	2	2	-inf
chr4	109107215	109107315	protein_coding	Ttc39a	intron	ENSMUSG00000028555	NonProperStrand	22	chr4	45379140	45379231	protein_coding	Dcaf10	intron	ENSMUSG00000035572	NonProperStrand	18	1	-16.5243
chr5	144813505	144814410	LTR	MLT1B	MaLR	chr5MLT1B144813395	ProperStrand	3	chr5	144806200	144807352	LTR	MLT2B2	ERVL	chr5MLT2B2144807214	ProperStrand	1	1	-inf
chr5	146261265	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr15	65869340	65869387	protein_coding	Kcnq3	intron	ENSMUSG00000056258	NonProperStrand	30	1	-9.2716
chr11	12912096	12912181	LINE	L1Md_F	L1	chr11L1Md_F12912047	NonProperStrand	1	chr17	39848019	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	43061815	43061915	LINE	L1Md_F2	L1	chr2L1Md_F243061478	ProperStrand	1	chr2	42275744	42275834	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-inf
chr14	109691075	109691165	LINE	Lx3A	L1	chr14Lx3A109690655	NonProperStrand	1	chr14	109691316	109691416	LINE	Lx3A	L1	chr14Lx3A109691303	NonProperStrand	1	1	-inf
chr3	115929165	115929264	LINE	L1MC2	L1	chr3L1MC2115928950	ProperStrand	6	chr5	114799199	114799227	protein_coding	Myo1h	intron	ENSMUSG00000066952	ProperStrand	46	1	-17.4103
chr17	39847205	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	168183150	168183277	LTR	ORR1A2	MaLR	chr2ORR1A2168182966	ProperStrand	10	2	-5.2538
chr2	22744886	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr3	144556861	144556970	protein_coding	Gm6289	intron	ENSMUSG00000074196	ProperStrand	31	1	-8.1297
chr5	41887719	41887809	LINE	L1Md_F2	L1	chr5L1Md_F241887629	ProperStrand	1	chr5	41887978	41888078	LINE	L1Md_F2	L1	chr5L1Md_F241887973	ProperStrand	2	1	-inf
chr14	99960958	99961029	LINE	L1M2	L1	chr14L1M299960589	NonProperStrand	4	chr17	39846462	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr4	130312428	130314008	protein_coding	Pum1	intron	ENSMUSG00000028580	ProperStrand	38	chr4	130315176	130315277	sense_intronic	Gm12971	.	ENSMUSG00000087449	ProperStrand	21	8	-21.2122
chr17	39847338	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	75020526	75029513	lincRNA	Gm17435	intron	ENSMUSG00000090373	ProperStrand	11	3	-5.3922
chr14	90084330	90084430	LINE	Lx3_Mus	L1	chr14Lx3_Mus90083381	ProperStrand	3	chr8	28212442	28212532	protein_coding	Gpr124	intron	ENSMUSG00000031486	NonProperStrand	4	3	-inf
chr17	39847439	39847479	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	29149190	29149220	protein_coding-noncoding	Plekhg2	utr3	ENSMUSG00000037552	NonProperStrand	2	1	-5.4040
chr1	157977558	157977658	protein_coding	Fam163a	intron	ENSMUSG00000015484	ProperStrand	4	chr17	31476493	31476583	protein_coding	Slc37a1	intron	ENSMUSG00000024036	ProperStrand	11	1	-inf
chr3	110654487	110654577	LINE	L1Md_T	L1	chr3L1Md_T110654074	ProperStrand	1	chr3	110654665	110654765	LINE	Lx3_Mus	L1	chr3Lx3_Mus110654617	ProperStrand	1	1	-inf
chr11	50158715	50159697	SINE	B1_Mus2	Alu	chr11B1_Mus250159656	NonProperStrand	1	chr11	50158541	50158746	SINE	B3	B2	chr11B350158555	NonProperStrand	1	1	-inf
chr14	33967853	33967943	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	chr18	7145864	7145964	protein_coding	Armc4	intron	ENSMUSG00000061802	ProperStrand	7	1	-15.9818
chr3	107553839	107553855	protein_coding	Csf1	utr5	ENSMUSG00000014599	NonProperStrand	3	chr15	79524373	79524496	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	ProperStrand	18	1	-23.1775
chr5	33519108	33519229	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr2	103717226	103717258	LTR	MTEa	MaLR	chr2MTEa103717098	ProperStrand	1	1	-inf
chr5	146261044	146261095	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	57999906	57999967	protein_coding	Atrnl1	intron	ENSMUSG00000054843	ProperStrand	65	1	-4.9078
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr3	108554576	108554687	protein_coding	Aknad1	utr5	ENSMUSG00000049565	NonProperStrand	220	1	-5.2879
chr9	78367199	78367294	SINE	B2_Mm1t	B2	chr9B2_Mm1t78367196	NonProperStrand	39	chr9	78367156	78367200	Simple_repeat	(CAAA)n	Simple_repeat	chr9(CAAA)n78367157	NonProperStrand	1	1	-inf
chr5	33667965	33668135	LTR	MT2A	ERVL	chr5MT2A33667937	ProperStrand	2	chr5	33668192	33668718	LTR	MT2C_Mm	ERVL	chr5MT2C_Mm33668462	NonProperStrand	3	1	-20.8297
chr17	39846776	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	122438969	122439067	protein_coding	Mon2	intron	ENSMUSG00000034602	ProperStrand	2	1	-5.3533
chr11	109011810	109011857	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	108336713	108336770	SINE	B2_Mm2	B2	chr9B2_Mm2108336708	ProperStrand	10	1	-9.7335
chr8	22628323	22630364	LTR	MERVL-int	ERVL	chr8MERVL-int22627573	ProperStrand	3	chr9	123461873	123461928	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr5	65306127	65306154	LTR	MMETn-int	ERVK	chr5MMETn-int65306068	ProperStrand	1	chr5	65307982	65308092	LTR	MMETn-int	ERVK	chr5MMETn-int65307029	ProperStrand	3	1	-inf
chr3	67599882	67599938	LTR	MT2A	ERVL	chr3MT2A67599856	ProperStrand	7	chr9	123462015	123462076	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr13	47932023	47932039	LTR	ORR1E	MaLR	chr13ORR1E47932026	NonProperStrand	6	chr11	30777578	30777720	protein_coding	Psme4	intron	ENSMUSG00000040850	ProperStrand	35	1	-17.9023
chr1	169168271	169168371	protein_coding	Uck2	intron	ENSMUSG00000026558	NonProperStrand	1	chr1	181141096	181141186	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-inf
chr17	35150080	35150256	protein_coding	Vars	exon	ENSMUSG00000007029	NonProperStrand	53	chr16	22382868	22382935	protein_coding	Etv5	utr3	ENSMUSG00000013089	ProperStrand	260	1	-9.3338
chr2	145860981	145861015	protein_coding	4930529M08Rik	exon	ENSMUSG00000037143	ProperStrand	37	chr5	17776752	17776796	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-11.0802
chr2	89025998	89026098	LINE	Lx7	L1	chr2Lx789025980	ProperStrand	1	chr2	89026423	89026513	LINE	Lx9	L1	chr2Lx989026150	NonProperStrand	1	1	-inf
chr10	84659765	84659806	SINE	ID4_	ID	chr10ID4_84659747	ProperStrand	1	chr1	55279146	55279197	protein_coding	Rftn2	intron	ENSMUSG00000025978	ProperStrand	9	1	-inf
chr10	7187902	7187951	LINE	L1_Mus4	L1	chr10L1_Mus47187901	NonProperStrand	1	chr17	39846670	39846728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	67600008	67601329	LTR	MERVL_2A-int	ERVL	chr3MERVL_2A-int67600392	ProperStrand	6	chr3	67598100	67600004	LTR	MT2A	ERVL	chr3MT2A67599856	ProperStrand	7	6	-inf
chr11	72738086	72738186	protein_coding	Zzef1	intron	ENSMUSG00000055670	ProperStrand	78	chr11	88516311	88516401	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-5.7469
chr17	39846783	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	23093223	23093241	SINE	B3	B2	chr11B323093126	NonProperStrand	2	1	-5.3533
chr8	43193686	43193756	LINE	Lx8	L1	chr8Lx843192987	ProperStrand	3	chr9	123462076	123462129	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr17	25916724	25916839	protein_coding	Narfl	intron	ENSMUSG00000002280	NonProperStrand	17	chr17	25916836	25916926	protein_coding	Haghl	utr3	ENSMUSG00000061046	ProperStrand	26	4	-inf
chr11	118085326	118085452	protein_coding	Cyth1	intron	ENSMUSG00000017132	NonProperStrand	253	chr5	24371962	24372129	protein_coding	Prkag2	exon	ENSMUSG00000028944	NonProperStrand	128	1	-7.6259
chr17	45569508	45569574	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr2	119804332	119804408	protein_coding	Mapkbp1	intron	ENSMUSG00000033902	ProperStrand	29	1	-10.2658
chr17	39843490	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr15	79212799	79212834	protein_coding	Tmem184b	intron	ENSMUSG00000009035	NonProperStrand	28	1	-3.9511
chr17	39846462	39846508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	76207847	76208562	Simple_repeat	(CCA)n	Simple_repeat	chr5(CCA)n76207831	ProperStrand	1	1	-inf
chr6	24025945	24026035	LTR	ORR1B1-int	MaLR	chr6ORR1B1-int24025812	ProperStrand	3	chr6	24025681	24025781	LTR	ORR1B1	MaLR	chr6ORR1B124025439	ProperStrand	3	3	-inf
chr10	21000700	21000751	LINE	L1Md_T	L1	chr10L1Md_T21000000	ProperStrand	2	chr10	20995609	20995692	LINE	Lx	L1	chr10Lx20995226	NonProperStrand	2	1	-19.8939
chr2	32799135	32799175	protein_coding	Lrsam1	intron	ENSMUSG00000026792	ProperStrand	24	chr19	8889140	8889211	protein_coding	Ttc9c	intron	ENSMUSG00000071660	NonProperStrand	10	1	-17.6138
chr9	22040335	22040410	protein_coding	Zfp809	intron	ENSMUSG00000057982	NonProperStrand	16	chr8	108745354	108745427	protein_coding	Prmt7	intron	ENSMUSG00000060098	ProperStrand	70	2	-inf
chr18	4962848	4962886	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr13	44823510	44848334	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-5.9114
chr17	39848598	39848680	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr14	14796765	14796819	SINE	B2_Mm1a	B2	chr14B2_Mm1a14796719	NonProperStrand	1	1	-inf
chr4	126384886	126384986	protein_coding-noncoding	Psmb2	utr5	ENSMUSG00000028837	NonProperStrand	1	chr4	126384975	126385065	protein_coding	Psmb2	intron	ENSMUSG00000028837	NonProperStrand	3	1	-inf
chr11	109657493	109657545	protein_coding	1700012B07Rik	intron	ENSMUSG00000020617	NonProperStrand	12	chr3	94886525	94886606	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	ProperStrand	13	1	-18.6827
chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr9	45879878	45880021	protein_coding	Sik3	intron	ENSMUSG00000034135	NonProperStrand	65	1	-9.7841
chr6	87997490	87997508	SINE	B1F1	Alu	chr6B1F187997416	NonProperStrand	4	chr9	123461931	123462157	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-10.7746
chr3	121725089	121725168	SINE	B2_Mm1t	B2	chr3B2_Mm1t121724986	ProperStrand	1	chr8	70509353	70509557	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-inf
chr9	5009532	5009632	LINE	Lx5	L1	chr9Lx55007830	ProperStrand	2	chr9	7045160	7045250	protein_coding	Dync2h1	intron	ENSMUSG00000047193	NonProperStrand	5	1	-inf
chr17	50420126	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr15	85177751	85177776	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-7.2379
chr10	25377858	25377902	LTR	ORR1B1	MaLR	chr10ORR1B125377788	NonProperStrand	1	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr8	83196072	83196154	protein_coding	Frem3	intron	ENSMUSG00000042353	ProperStrand	40	chr8	123970365	123970420	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-7.0178
chr1	152881985	152882058	LINE	L1_Mur2	L1	chr1L1_Mur2152881543	NonProperStrand	2	chr5	146260998	146261024	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-12.4657
chr15	62069643	62069707	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr11	97373540	97373614	protein_coding	Srcin1	utr3	ENSMUSG00000038453	NonProperStrand	68	1	-5.9733
chr5	130243542	130243558	protein_coding	Gbas	intron	ENSMUSG00000029432	NonProperStrand	16	chr13	97190605	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chr15	76174212	76174302	protein_coding	Cyc1	intron	ENSMUSG00000022551	NonProperStrand	79	chr15	76177534	76177634	protein_coding	Sharpin	utr3	ENSMUSG00000022552	ProperStrand	45	1	-12.0494
chr11	78504439	78504457	protein_coding	Nlk	intron	ENSMUSG00000017376	NonProperStrand	32	chr4	137618436	137618562	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-9.2003
chr19	13759577	13759658	LINE	L1Md_T	L1	chr19L1Md_T13759071	NonProperStrand	1	chr17	70963682	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr6	3201461	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	31141203	31141243	protein_coding	Mapre3	intron	ENSMUSG00000029166	ProperStrand	11	1	-6.1647
chr7	5069448	5069529	SINE	ID_B1	B4	chr7ID_B15069454	ProperStrand	3	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-16.6488
chr14	63616488	63616590	LINE	L1MA5	L1	chr14L1MA563616514	ProperStrand	1	chr14	63616384	63616474	LINE	Lx8	L1	chr14Lx863616353	ProperStrand	1	1	-inf
chr16	92415392	92415418	protein_coding	Rcan1	intron	ENSMUSG00000022951	ProperStrand	210	chr3	86547274	86547290	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-8.6115
chr5	115680379	115680469	SINE	B2_Mm1a	B2	chr5B2_Mm1a115680402	NonProperStrand	1	chr5	115680216	115680316	SINE	B2_Mm2	B2	chr5B2_Mm2115680201	NonProperStrand	4	1	-inf
chr3	75621452	75621469	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr15	51831387	51831414	SINE	B1_Mus2	Alu	chr15B1_Mus251831289	ProperStrand	1	1	-inf
chr3	146773903	146773969	LINE	L1Md_A	L1	chr3L1Md_A146770128	ProperStrand	3	chr2	5403401	5403457	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr13	14866456	14866556	LINE	L1Md_F2	L1	chr13L1Md_F214863706	NonProperStrand	1	chr13	14862875	14862965	LTR	RLTR18B	ERVK	chr13RLTR18B14862775	NonProperStrand	1	1	-inf
chr12	102572547	102572629	LINE	L1_Mus1	L1	chr12L1_Mus1102572473	ProperStrand	12	chr12	102572199	102572219	LTR	RLTRETN_Mm	ERVK	chr12RLTRETN_Mm102572138	NonProperStrand	1	1	-inf
chr17	39846847	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101762220	101762328	SINE	B2_Mm2	B2	chr11B2_Mm2101762161	ProperStrand	4	1	-3.6552
chrX	36605790	36605882	LINE	L1Md_F2	L1	chrXL1Md_F236605608	NonProperStrand	4	chr11	98829274	98829324	protein_coding	Rara	intron	ENSMUSG00000037992	ProperStrand	32	3	-20.7976
chr5	27038176	27038203	LINE	Lx	L1	chr5Lx27038133	NonProperStrand	1	chr17	39846405	39846444	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	69158723	69158740	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	chr18	77778542	77778617	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-11.0767
chr17	39848722	39848809	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	12444462	12444538	LTR	RMER17C-int	ERVK	chr11RMER17C-int12444284	ProperStrand	7	1	-5.7189
chr13	63509953	63510024	protein_coding	Fancc	intron	ENSMUSG00000021461	ProperStrand	182	chr9	47585300	47585325	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	1	-7.2968
chr11	19521898	19521998	LINE	Lx2	L1	chr11Lx219521927	NonProperStrand	1	chr11	19521675	19521765	SINE	B4	B4	chr11B419521668	NonProperStrand	1	1	-inf
chr7	28820163	28820555	LTR	RMER19C	ERVK	chr7RMER19C28820055	ProperStrand	29	chr11	79064063	79064081	protein_coding	Wsb1	intron	ENSMUSG00000017677	NonProperStrand	8	1	-17.5401
chr10	120444805	120444881	LINE	L1M4	L1	chr10L1M4120444713	NonProperStrand	2	chr10	120439311	120439378	LTR	ORR1A4	MaLR	chr10ORR1A4120439069	ProperStrand	2	2	-inf
chr17	45570476	45570530	protein_coding	Cdc5l	utr5	ENSMUSG00000023932	ProperStrand	300	chr6	116092987	116093064	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	1	-8.8332
chr16	84828511	84831374	protein_coding-noncoding	Atp5j	utr3	ENSMUSG00000022890	ProperStrand	2	chr9	123461927	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	29650571	29650671	protein_coding	Coq4	intron	ENSMUSG00000026798	ProperStrand	35	chr6	30042121	30042211	protein_coding	Nrf1	intron	ENSMUSG00000058440	NonProperStrand	5	1	-18.3660
chr11	109011745	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	122283493	122283553	protein_coding	Abhd5	intron	ENSMUSG00000032540	NonProperStrand	9	1	-9.9559
chr17	39847545	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	34829734	34829777	LTR	RLTR23	ERV1	chr8RLTR2334829715	NonProperStrand	1	1	-inf
chr11	101166422	101166493	SINE	B2_Mm2	B2	chr11B2_Mm2101166369	NonProperStrand	1	chr11	51605602	51606393	SINE	B3A	B2	chr11B3A51606308	ProperStrand	14	1	-inf
chr8	27226149	27226240	protein_coding	Hook3	intron	ENSMUSG00000037234	ProperStrand	117	chr12	82395307	82395335	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	1	-9.3759
chr16	73425671	73425761	LINE	Lx8	L1	chr16Lx873425536	ProperStrand	1	chr16	73425332	73425432	LTR	RLTR16	ERVK	chr16RLTR1673425057	ProperStrand	1	1	-inf
chr8	64842166	64842256	LINE	L1MEc	L1	chr8L1MEc64842170	NonProperStrand	3	chr8	64842071	64842171	LINE	Lx2	L1	chr8Lx264841502	ProperStrand	3	3	-inf
chr6	3201482	3201504	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr1	42953730	42953806	protein_coding	Mrps9	intron	ENSMUSG00000060679	ProperStrand	4	1	-8.3508
chr17	39846647	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	163909895	163909918	protein_coding	Stk4	intron	ENSMUSG00000018209	ProperStrand	2	1	-5.3533
chr16	17927547	17927604	protein_coding-noncoding	Slc25a1	utr3	ENSMUSG00000003528	ProperStrand	3	chr16	17927232	17927393	protein_coding	Slc25a1	intron	ENSMUSG00000003528	ProperStrand	7	1	-25.2264
chrX	151933093	151934333	LINE	Lx6	L1	chrXLx6151933220	NonProperStrand	2	chrX	151934352	151934452	LINE	Lx6	L1	chrXLx6151933535	NonProperStrand	2	2	-inf
chr8	122387323	122387351	protein_coding	Klhl36	intron	ENSMUSG00000031828	ProperStrand	25	chr3	83931797	83931813	protein_coding	Mnd1	intron	ENSMUSG00000033752	NonProperStrand	5	1	-19.2557
chr11	34421299	34421372	protein_coding	Dock2	intron	ENSMUSG00000020143	NonProperStrand	17	chr1	34839325	34839398	protein_coding	Arhgef4	intron	ENSMUSG00000037509	NonProperStrand	73	1	-14.1949
chr11	69909618	69910268	protein_coding	Asgr2	intron	ENSMUSG00000040963	ProperStrand	43	chr14	52300064	52300186	pseudogene	Gm17186	.	ENSMUSG00000090603	ProperStrand	7	1	-17.1341
chr14	121937439	121937466	LINE	Lx8	L1	chr14Lx8121936968	ProperStrand	2	chr2	67190726	67190807	antisense	Gm13599	.	ENSMUSG00000087043	NonProperStrand	7	1	-21.1088
chr16	32897234	32897324	protein_coding-noncoding	Fyttd1	utr5	ENSMUSG00000022800	NonProperStrand	1	chr16	32897100	32897200	protein_coding	Fyttd1	intron	ENSMUSG00000022800	NonProperStrand	2	1	-inf
chr8	43058464	43058554	LINE	Lx7	L1	chr8Lx743058487	ProperStrand	1	chr8	43058807	43058907	Simple_repeat	(TTTC)n	Simple_repeat	chr8(TTTC)n43058808	ProperStrand	1	1	-inf
chr11	109011812	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	105238485	105238519	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-6.7596
chr5	115490351	115490397	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr17	25115489	25115525	protein_coding	Cramp1l	intron	ENSMUSG00000038002	ProperStrand	64	1	-9.0255
chr9	102922596	102922701	protein_coding	Slco2a1	intron	ENSMUSG00000032548	ProperStrand	18	chr17	35988324	35988346	protein_coding	Mdc1	intron	ENSMUSG00000061607	NonProperStrand	1	1	-inf
chr17	39847636	39847693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	75098893	75100039	protein_coding	Pbsn	utr5	ENSMUSG00000000003	NonProperStrand	3	1	-4.3512
chr10	127696448	127696516	LINE	Lx8	L1	chr10Lx8127695990	ProperStrand	4	chr11	75682409	75682480	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	1	-15.7925
chr11	51061125	51061200	LTR	MYSERV6-int	ERVK	chr11MYSERV6-int51060670	NonProperStrand	2	chr17	39847843	39847928	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr3	30739944	30740044	LINE	Lx5	L1	chr3Lx530739971	ProperStrand	1	chr3	30739733	30739823	LTR	RLTR15	ERVK	chr3RLTR1530739580	NonProperStrand	1	1	-inf
chr1	99476297	99476387	LINE	L1Md_T	L1	chr1L1Md_T99475525	NonProperStrand	1	chr1	99476172	99476272	LINE	L1Md_T	L1	chr1L1Md_T99475525	ProperStrand	1	1	-inf
chr17	39847803	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	16820752	16820817	protein_coding	E2f6	intron	ENSMUSG00000057469	ProperStrand	1	1	-inf
chr16	58934111	58934201	LINE	L1_Mur2	L1	chr16L1_Mur258933887	ProperStrand	1	chr16	58933717	58933817	LTR	MTEa	MaLR	chr16MTEa58933735	ProperStrand	1	1	-inf
chr9	114552085	114552182	SINE	RSINE1	B4	chr9RSINE1114552045	NonProperStrand	3	chr9	114526915	114526955	protein_coding	Cnot10	exon	ENSMUSG00000056167	ProperStrand	446	1	-14.3742
chr13	56644448	56644474	protein_coding	Lect2	intron	ENSMUSG00000021539	NonProperStrand	1	chr9	100671608	100671730	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	1	-inf
chr17	39847552	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	26912761	26912914	LTR	ORR1D2	MaLR	chr2ORR1D226912626	NonProperStrand	16	3	-3.9541
chr1	153445418	153445512	protein_coding	Fam129a	intron	ENSMUSG00000026483	ProperStrand	13	chr4	132900579	132900629	protein_coding	Wdtc1	intron	ENSMUSG00000037622	ProperStrand	33	1	-16.3791
chr2	117968977	117968994	LINE	Lx3_Mus	L1	chr2Lx3_Mus117968729	ProperStrand	1	chr17	39847440	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	136771675	136771765	Simple_repeat	(GA)n	Simple_repeat	chr4(GA)n136771640	ProperStrand	1	chr4	136771792	136771892	Simple_repeat	(GGAGA)n	Simple_repeat	chr4(GGAGA)n136771759	ProperStrand	1	1	-inf
chr10	105786618	105786718	LINE	L1_Mm	L1	chr10L1_Mm105786248	NonProperStrand	3	chr10	105786918	105787008	LINE	Lx2B	L1	chr10Lx2B105786703	NonProperStrand	1	1	-inf
chr14	31259370	31259387	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr13	93449846	93449940	protein_coding	Serinc5	intron	ENSMUSG00000021703	NonProperStrand	22	1	-11.7747
chr6	32602708	32602808	DNA	MER2	MER2_type	chr6MER232602713	NonProperStrand	1	chr6	32603009	32603099	SINE	B3A	B2	chr6B3A32602901	NonProperStrand	1	1	-inf
chr14	19278161	19278205	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr5	33604885	33604920	protein_coding	Ctbp1	intron	ENSMUSG00000037373	ProperStrand	23	1	-13.4917
chr14	27077643	27077701	protein_coding-noncoding	Gm10391	utr5	ENSMUSG00000072672	ProperStrand	2	chr9	123461876	123461908	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847552	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	74642297	74642313	protein_coding	Bcr	intron	ENSMUSG00000009681	ProperStrand	4	1	-3.7035
chr4	150149533	150149623	LTR	MLT2E	ERVL	chr4MLT2E150149477	NonProperStrand	1	chr4	150148929	150149029	Low_complexity	GA-rich	Low_complexity	chr4GA-rich150148929	NonProperStrand	1	1	-inf
chr1	180756604	180756694	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	62	chr1	180706323	180706423	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	1	-9.8323
chr3	116906310	116906399	LTR	IAPEz-int	ERVK	chr3IAPEz-int116905576	NonProperStrand	17	chr3	116906342	116906442	LTR	IAPEz-int	ERVK	chr3IAPEz-int116906331	NonProperStrand	1	1	-inf
chr9	22376374	22376445	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	chr17	5094222	5094253	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-6.9503
chr16	90017627	90017680	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr9	47576067	47576142	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	1	-3.8987
chr13	57513847	57513897	SINE	B4	B4	chr13B457513844	ProperStrand	1	chr17	39843503	39843542	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr15	77752926	77753010	protein_coding	Txn2	intron	ENSMUSG00000005354	ProperStrand	14	chr5	107907436	107907477	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-13.4173
chr1	109813968	109814058	LINE	Lx9	L1	chr1Lx9109813389	NonProperStrand	1	chr1	109814133	109814233	LTR	MTE2b	MaLR	chr1MTE2b109814124	ProperStrand	1	1	-inf
chr14	40957946	40957989	LINE	Lx	L1	chr14Lx40957914	ProperStrand	1	chr14	40959180	40959257	LINE	Lx	L1	chr14Lx40958222	ProperStrand	2	1	-inf
chr9	59656592	59665204	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr15	37321772	37321845	protein_coding	Ncald	intron	ENSMUSG00000051359	NonProperStrand	16	1	-8.9492
chr6	3201465	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	78168364	78168445	Other	RMER1B	Other	chr10RMER1B78168077	ProperStrand	1	1	-inf
chr5	146261045	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	108445078	108445156	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	57	1	-5.1623
chr16	18781913	18784866	protein_coding	Cdc45	intron	ENSMUSG00000000028	ProperStrand	28	chr10	82955208	82955256	protein_coding	Aldh1l2	intron	ENSMUSG00000020256	ProperStrand	30	1	-14.9752
chr15	48794457	48794557	LINE	Lx3C	L1	chr15Lx3C48794384	ProperStrand	1	chr15	48794708	48794798	LTR	MLT2B2	ERVL	chr15MLT2B248794652	NonProperStrand	1	1	-inf
chr17	86034320	86034360	LINE	L1VL4	L1	chr17L1VL486033637	NonProperStrand	3	chr1	89638312	89638392	LTR	MT2_Mm	ERVL	chr1MT2_Mm89638089	NonProperStrand	3	1	-20.2168
chr10	121974376	121974479	LTR	MLT1H2	MaLR	chr10MLT1H2121974335	ProperStrand	1	chr2	34577656	34577674	protein_coding	Gapvd1	intron	ENSMUSG00000026867	NonProperStrand	127	1	-inf
chr4	86856180	86856203	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	chr13	97190600	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.2635
chr16	23915218	23915318	LTR	RLTR19-int	ERVK	chr16RLTR19-int23914378	ProperStrand	1	chr16	23915424	23915514	LTR	RLTR19-int	ERVK	chr16RLTR19-int23915413	ProperStrand	1	1	-inf
chr17	39847491	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	97272033	97298834	SINE	B1F	Alu	chr7B1F97272007	NonProperStrand	1	1	-inf
chr1	64734353	64734394	antisense	2810408I11Rik	.	ENSMUSG00000087213	ProperStrand	99	chr11	117994411	117994442	protein_coding	Cyth1	intron	ENSMUSG00000017132	ProperStrand	12	1	-14.3020
chr13	111453216	111453374	LINE	L1_Mus4	L1	chr13L1_Mus4111449199	NonProperStrand	11	chr8	48515150	48515236	lincRNA	4930448N21Rik	intron	ENSMUSG00000086634	ProperStrand	141	1	-13.7741
chr19	10214152	10214232	LINE	L1MB5	L1	chr19L1MB510214147	NonProperStrand	1	chr19	10214883	10215036	SINE	B4A	B4	chr19B4A10214881	NonProperStrand	1	1	-inf
chr11	97781641	97781763	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr9	110281305	110281328	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.3253
chr11	62604531	62604583	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr11	102919827	102919919	protein_coding	Nmt1	intron	ENSMUSG00000020936	NonProperStrand	24	1	-14.7027
chr5	63962125	63962221	LINE	L1_Mus3	L1	chr5L1_Mus363961961	NonProperStrand	4	chr5	63959588	63959642	SINE	B4A	B4	chr5B4A63959453	ProperStrand	2	2	-inf
chr4	65355156	65355184	protein_coding	Astn2	intron	ENSMUSG00000028373	ProperStrand	24	chrX	84422651	84422725	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	ProperStrand	52	1	-14.1705
chr13	25897389	25897489	LINE	L1Md_F2	L1	chr13L1Md_F225897001	NonProperStrand	1	chr13	25897551	25897641	SINE	ID_B1	B4	chr13ID_B125897571	NonProperStrand	1	1	-inf
chrX	101655148	101655248	SINE	B1_Mur2	Alu	chrXB1_Mur2101655131	NonProperStrand	1	chrX	101655060	101655150	Simple_repeat	(TTCC)n	Simple_repeat	chrX(TTCC)n101655005	ProperStrand	2	1	-inf
chr17	39847544	39847604	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	28881426	28881476	protein_coding	Fcgbp	intron	ENSMUSG00000047730	ProperStrand	4	1	-3.7035
chr2	144261934	144270386	SINE	B3	B2	chr2B3144261950	NonProperStrand	5	chr2	144270430	144270761	Simple_repeat	(CCA)n	Simple_repeat	chr2(CCA)n144270686	NonProperStrand	9	4	-inf
chr5	30875821	30876081	DNA	MER20	MER1_type	chr5MER2030875732	ProperStrand	4	chr17	39846376	39846466	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr10	78036633	78036701	SINE	B1_Mus2	Alu	chr10B1_Mus278036612	ProperStrand	3	1	-13.1573
chr5	33496861	33496920	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	chr16	35490131	35490180	protein_coding	Pdia5	intron	ENSMUSG00000022844	ProperStrand	150	1	-5.8167
chr19	6353522	6353599	protein_coding	Map4k2	utr3	ENSMUSG00000024948	ProperStrand	14	chr9	123462133	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr3	60550331	60550387	LINE	Lx5	L1	chr3Lx560549585	NonProperStrand	2	chr16	42887629	42887699	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	1	-16.1024
chr14	34234796	34234920	protein_coding	Mapk8	intron	ENSMUSG00000021936	ProperStrand	23	chr5	107967378	107967395	protein_coding	1700028K03Rik	intron	ENSMUSG00000089798	ProperStrand	3	1	-19.7792
chr4	5208532	5208632	LINE	Lx7	L1	chr4Lx75208475	NonProperStrand	1	chr4	5209067	5209157	LINE	Lx7	L1	chr4Lx75209022	ProperStrand	1	1	-inf
chr5	104790220	104790270	SINE	B4A	B4	chr5B4A104790098	ProperStrand	1	chr19	44079624	44079714	protein_coding	Cyp2c44	utr3	ENSMUSG00000025197	ProperStrand	8	1	-inf
chr19	20627365	20627384	LTR	MTEa	MaLR	chr19MTEa20627366	NonProperStrand	1	chr18	10074672	10074746	protein_coding	Rock1	intron	ENSMUSG00000024290	ProperStrand	28	1	-inf
chr6	145235556	145235642	LTR	MTD	MaLR	chr6MTD145235408	NonProperStrand	1	chr1	77452295	77452343	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	1	-inf
chr17	39848245	39848367	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr12	112607532	112607548	protein_coding	Cdc42bpb	intron	ENSMUSG00000021279	ProperStrand	2	1	-8.4422
chr1	139009696	139009778	DNA	URR1B	MER1_type	chr1URR1B139009701	ProperStrand	1	chr1	139009894	139009925	LTR	MTD	MaLR	chr1MTD139009854	ProperStrand	4	1	-inf
chr15	89165321	89165723	protein_coding-noncoding	Miox	utr5	ENSMUSG00000022613	NonProperStrand	14	chr15	89165750	89165916	protein_coding	Miox	intron	ENSMUSG00000022613	NonProperStrand	1	1	-inf
chr4	91365397	91365509	LINE	L1Md_F2	L1	chr4L1Md_F291365172	NonProperStrand	1	chr17	39846962	39847000	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	115565298	115571490	SINE	B2_Mm2	B2	chr5B2_Mm2115566950	ProperStrand	1	chr17	31654088	31654188	protein_coding	Wdr4	intron	ENSMUSG00000024037	ProperStrand	95	1	-inf
chr19	7290629	7290679	protein_coding	Cox8a	intron	ENSMUSG00000035885	ProperStrand	3	chr2	5379278	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr1	77420700	77420784	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	chr17	66483642	66483680	protein_coding	Ddx11	intron	ENSMUSG00000035842	NonProperStrand	19	1	-11.5831
chr15	34142768	34142878	LTR	RodERV21-int	ERV1	chr15RodERV21-int34142779	NonProperStrand	2	chr9	123461864	123461906	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr9	123462015	123462105	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr19	43199733	43199833	protein_coding	Hpse2	intron	ENSMUSG00000074852	ProperStrand	13	1	-3.8693
chr18	63078738	63078754	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr13	97190601	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.4224
chr12	20243336	20243436	LTR	MTD	MaLR	chr12MTD20243268	ProperStrand	1	chr12	20243196	20243286	LTR	RLTR9D	ERVK	chr12RLTR9D20243192	NonProperStrand	1	1	-inf
chrX	78485735	78485825	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int78485656	ProperStrand	1	chrX	78485507	78485607	LTR	MTA_Mm	MaLR	chrXMTA_Mm78485261	ProperStrand	1	1	-inf
chr2	132080475	132080558	antisense	AV099323	.	ENSMUSG00000087377	NonProperStrand	24	chr4	3835002	3835208	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	2	-inf
chr5	88617349	88617401	LINE	L1_Mur2	L1	chr5L1_Mur288617016	ProperStrand	2	chr5	88621347	88627232	LINE	Lx9	L1	chr5Lx988620843	NonProperStrand	2	2	-inf
chr9	15316449	15316479	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	chr5	14860047	14860075	protein_coding	Pclo	utr3	ENSMUSG00000061601	ProperStrand	13	1	-13.5750
chr17	39846450	39847038	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	12	-6.6195
chr11	105140553	105140643	protein_coding	Tlk2	intron	ENSMUSG00000020694	ProperStrand	9	chr2	38527309	38527409	pseudogene	Gpr144	.	ENSMUSG00000083722	ProperStrand	24	1	-17.7826
chr4	70360888	70364035	LINE	L1Md_F2	L1	chr4L1Md_F270355188	ProperStrand	5	chr4	70364016	70364106	LINE	L1Md_F2	L1	chr4L1Md_F270362747	ProperStrand	2	2	-inf
chr13	49483417	49483487	LINE	L1_Mus3	L1	chr13L1_Mus349483361	NonProperStrand	1	chr9	123461991	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	142200975	142201065	DNA	Zaphod	Tip100	chrXZaphod142200986	ProperStrand	1	chrX	142200830	142200930	SINE	B2_Mm2	B2	chrXB2_Mm2142200793	NonProperStrand	1	1	-inf
chr16	27920837	27920937	LTR	IAPLTR2_Mm	ERVK	chr16IAPLTR2_Mm27920520	ProperStrand	1	chr16	27921180	27921270	SINE	MIR	MIR	chr16MIR27921088	ProperStrand	1	1	-inf
chr3	100020941	100021041	LTR	RLTR26	ERVK	chr3RLTR26100020640	ProperStrand	1	chr3	100021304	100021394	Simple_repeat	(TCC)n	Simple_repeat	chr3(TCC)n100021301	NonProperStrand	1	1	-inf
chr17	39844643	39844743	DNA	URR1A	MER1_type	chr17URR1A39844603	ProperStrand	2	chr17	39847180	39847270	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	1	-20.6107
chr4	152433909	152433999	LTR	ORR1D2	MaLR	chr4ORR1D2152433896	ProperStrand	2	chr4	152433813	152433913	SINE	B4	B4	chr4B4152433754	NonProperStrand	2	2	-inf
chr6	88228135	88228225	protein_coding	Eefsec	intron	ENSMUSG00000033216	NonProperStrand	8	chr6	95638404	95638504	protein_coding	Suclg2	intron	ENSMUSG00000061838	NonProperStrand	15	2	-inf
chr4	133293449	133293484	protein_coding	Arid1a	intron	ENSMUSG00000007880	ProperStrand	53	chr10	10100977	10101022	protein_coding	9130014G24Rik	intron	ENSMUSG00000050994	NonProperStrand	6	1	-17.0435
chr9	123461964	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	152313529	152313587	protein_coding	Defb22	intron	ENSMUSG00000027468	NonProperStrand	5	1	-5.8308
chr9	121736787	121736846	antisense	Gm17163	.	ENSMUSG00000092042	ProperStrand	11	chr5	34998455	34998548	protein_coding	Nop14	intron	ENSMUSG00000036693	NonProperStrand	13	1	-18.7323
chr11	115583332	115583746	SINE	B1_Mus1	Alu	chr11B1_Mus1115583251	ProperStrand	3	chr2	6924884	6924904	protein_coding	Celf2	intron	ENSMUSG00000002107	ProperStrand	39	3	-inf
chr10	12913701	12913743	LTR	RMER17B	ERVK	chr10RMER17B12913642	ProperStrand	1	chr13	97190573	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr1	97270475	97270565	LINE	Lx	L1	chr1Lx97268125	NonProperStrand	1	chr1	97270677	97270777	LTR	MLT1D	MaLR	chr1MLT1D97270644	ProperStrand	1	1	-inf
chr2	90512829	90512849	SINE	B1_Mus1	Alu	chr2B1_Mus190512756	ProperStrand	1	chr2	90532037	90532150	protein_coding-noncoding	Nup160	utr5	ENSMUSG00000051329	NonProperStrand	15	1	-inf
chr10	41209347	41209772	protein_coding-noncoding	Smpd2	utr3	ENSMUSG00000019822	ProperStrand	4	chr10	41209108	41209887	protein_coding	Smpd2	utr5	ENSMUSG00000019822	ProperStrand	2	2	-inf
chr14	70743187	70743259	protein_coding	Slc39a14	intron	ENSMUSG00000022094	ProperStrand	17	chr3	153352501	153352567	protein_coding	St6galnac3	intron	ENSMUSG00000052544	ProperStrand	282	1	-11.4809
chr1	179590255	179590377	LTR	RLTR10C	ERVK	chr1RLTR10C179590044	NonProperStrand	1	chr11	46110902	46110926	protein_coding	Cyfip2	intron	ENSMUSG00000020340	NonProperStrand	77	1	-inf
chr15	4027955	4028039	protein_coding	Oxct1	intron	ENSMUSG00000022186	ProperStrand	51	chr18	20864397	20864471	protein_coding	B4galt6	intron	ENSMUSG00000056124	ProperStrand	13	1	-15.4820
chr6	3201457	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	107090916	107090977	LTR	ORR1E	MaLR	chr8ORR1E107090730	ProperStrand	1	1	-inf
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	chr5	31068811	31069072	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	1	-11.3565
chr17	39847516	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	148434443	148434546	SINE	B1F	Alu	chr6B1F148434458	ProperStrand	1	1	-inf
chr9	44635795	44635857	protein_coding	Mll1	intron	ENSMUSG00000002028	NonProperStrand	44	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.1476
chr15	12843157	12843189	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	chr5	77273947	77273989	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	1	-9.4942
chr13	49705873	49706735	protein_coding	Ogn	exon	ENSMUSG00000021390	ProperStrand	39	chr5	116409177	116409233	protein_coding	Cit	intron	ENSMUSG00000029516	NonProperStrand	17	1	-15.4593
chr2	5379274	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr17	33825617	33829705	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-5.7120
chr3	19898610	19898687	protein_coding	Cp	intron	ENSMUSG00000003617	ProperStrand	7	chr7	99153970	99153987	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-14.0161
chr17	39846097	39847368	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	169012933	169012981	LTR	MLT1A1	MaLR	chr2MLT1A1169012938	NonProperStrand	3	1	-4.3017
chr11	109011794	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr18	65092997	65093064	protein_coding	Nedd4l	intron	ENSMUSG00000024589	ProperStrand	160	1	-4.2033
chr17	39846783	39846922	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	17552417	17552438	protein_coding	Txlnb	intron	ENSMUSG00000039891	ProperStrand	2	1	-5.3533
chr16	91027243	91027267	protein_coding	Gcfc1	intron	ENSMUSG00000022974	ProperStrand	18	chr9	36796436	36796470	protein_coding	Pknox2	intron	ENSMUSG00000035934	ProperStrand	37	1	-15.4557
chr2	121162502	121162602	protein_coding-noncoding	Ppip5k1	utr3	ENSMUSG00000033526	ProperStrand	1	chr2	121162856	121162946	protein_coding	Ppip5k1	exon	ENSMUSG00000033526	ProperStrand	5	1	-inf
chr8	71650607	71651153	LTR	ORR1D2	MaLR	chr8ORR1D271650390	NonProperStrand	1	chr8	71651964	71652054	LTR	RMER17C	ERVK	chr8RMER17C71651928	NonProperStrand	2	1	-inf
chr15	58955117	58955166	LTR	ORR1D1	MaLR	chr15ORR1D158955002	NonProperStrand	1	chr17	39847471	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	110841905	110842749	LINE	L1MD1	L1	chr8L1MD1110841494	NonProperStrand	3	chr8	110842763	110842853	LINE	L1MD1	L1	chr8L1MD1110842678	NonProperStrand	2	1	-20.2824
chr9	83839742	83843093	protein_coding	Bckdhb	intron	ENSMUSG00000032263	ProperStrand	63	chr11	88455576	88455616	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-6.1666
chr10	80123333	80123413	SINE	B2_Mm2	B2	chr10B2_Mm280123347	NonProperStrand	3	chr10	80118161	80118184	protein_coding	Btbd2	intron	ENSMUSG00000003344	NonProperStrand	29	1	-19.5983
chr12	83843205	83843260	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	chr2	104049328	104049412	protein_coding	D430041D05Rik	intron	ENSMUSG00000068373	NonProperStrand	21	1	-11.5351
chr5	33919759	33919848	SINE	B1_Mus1	Alu	chr5B1_Mus133919757	ProperStrand	1	chr5	33919656	33919756	Simple_repeat	(TCC)n	Simple_repeat	chr5(TCC)n33919682	NonProperStrand	1	1	-inf
chr2	19102241	19102341	LTR	ORR1B1	MaLR	chr2ORR1B119102056	NonProperStrand	1	chr16	17907534	17907624	protein_coding	Dgcr14	intron	ENSMUSG00000003527	ProperStrand	12	1	-inf
chr11	109011652	109011701	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	170767610	170767684	LTR	ORR1A2	MaLR	chr2ORR1A2170767524	NonProperStrand	1	1	-inf
chr5	8057603	8059360	protein_coding	Sri	exon	ENSMUSG00000003161	ProperStrand	7	chr9	114543476	114543607	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-12.4296
chr4	142155522	142155622	SINE	B4A	B4	chr4B4A142155458	NonProperStrand	4	chr4	142155623	142155713	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n142155627	NonProperStrand	4	4	-inf
chr9	109472330	109472430	LTR	RLTR45	ERVK	chr9RLTR45109472299	NonProperStrand	1	chr9	109472130	109472220	SINE	B1_Mur1	Alu	chr9B1_Mur1109472062	NonProperStrand	1	1	-inf
chr10	21480512	21480530	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	11	chr1	63426375	63426404	Simple_repeat	(TCC)n	Simple_repeat	chr1(TCC)n63426212	ProperStrand	1	1	-inf
chr12	119325156	119325234	protein_coding	Dnahc11	intron	ENSMUSG00000018581	ProperStrand	13	chr9	123461869	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr17	39843001	39843064	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	65816035	65824343	protein_coding	Tmem232	intron	ENSMUSG00000045036	NonProperStrand	58	1	-5.4523
chr13	29294518	29294608	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr5	77183140	77183240	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	1	-5.7339
chr15	59063329	59063347	LTR	RLTR19	ERVK	chr15RLTR1959063078	NonProperStrand	2	chr17	39847919	39848049	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr5	146260994	146261210	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	4962205	5110825	protein_coding	Ppp1r9a	utr3	ENSMUSG00000032827	ProperStrand	258	2	-4.2147
chr17	39846452	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	59024008	59024061	Simple_repeat	(TGG)n	Simple_repeat	chr15(TGG)n59024001	NonProperStrand	1	1	-inf
chr13	49504024	49504095	LINE	L1MC2	L1	chr13L1MC249503947	ProperStrand	1	chr13	49502713	49502774	Simple_repeat	(GAAAA)n	Simple_repeat	chr13(GAAAA)n49502693	NonProperStrand	1	1	-inf
chr6	82739558	82739658	LINE	Lx8	L1	chr6Lx882738664	NonProperStrand	12	chr6	82739687	82739777	Low_complexity	T-rich	Low_complexity	chr6T-rich82739711	NonProperStrand	2	2	-inf
chr13	105475000	105475100	antisense	2610204G07Rik	.	ENSMUSG00000084860	ProperStrand	1	chr13	105474748	105474838	protein_coding	Cwc27	intron	ENSMUSG00000021715	NonProperStrand	5	1	-inf
chr1	179347721	179347822	SINE	B4A	B4	chr1B4A179347552	NonProperStrand	4	chr1	179347824	179347914	Simple_repeat	(GGAA)n	Simple_repeat	chr1(GGAA)n179347806	NonProperStrand	3	3	-inf
chr18	32432369	32432415	LINE	Lx8	L1	chr18Lx832432378	ProperStrand	1	chr17	39846945	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	97423029	97423053	LTR	RMER6A	ERVK	chr5RMER6A97422864	NonProperStrand	4	chr5	97432653	97432741	protein_coding	Bmp2k	intron	ENSMUSG00000034663	ProperStrand	31	1	-19.3491
chr17	39847230	39847267	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	143999172	143999193	protein_coding	Zfp12	intron	ENSMUSG00000029587	ProperStrand	1	1	-inf
chr17	39847958	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	63648112	63648242	Other	RMER1B	Other	chr9RMER1B63647834	NonProperStrand	1	1	-inf
chr3	64019009	64019067	LINE	L1Md_F2	L1	chr3L1Md_F264018329	NonProperStrand	1	chr3	64019163	64019202	SINE	B1_Mus2	Alu	chr3B1_Mus264019146	ProperStrand	1	1	-inf
chr15	10589330	10589448	protein_coding	Rai14	intron	ENSMUSG00000022246	ProperStrand	160	chr17	25062514	25062548	protein_coding	Mapk8ip3	intron	ENSMUSG00000024163	NonProperStrand	44	1	-10.6792
chr1	55084557	55084647	SINE	B1_Mm	Alu	chr1B1_Mm55084487	NonProperStrand	5	chr1	55083725	55084550	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	2	-22.1407
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr5	107903812	107904747	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-8.7148
chr9	65201724	65201760	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr12	81504232	81504339	protein_coding	Dcaf5	intron	ENSMUSG00000049106	ProperStrand	69	1	-10.7758
chr11	73083080	73083097	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	chr12	79486369	79486432	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-8.0506
chr5	24323097	24323113	protein_coding	Rheb	intron	ENSMUSG00000028945	ProperStrand	22	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.4623
chr2	85041514	85041562	SINE	B1_Mur4	Alu	chr2B1_Mur485041461	NonProperStrand	1	chr13	97190553	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr13	109662371	109662422	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr10	89430693	89430762	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	65	1	-7.8200
chr11	109011815	109011860	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	112463730	112463785	SINE	MIR	MIR	chr7MIR112463572	NonProperStrand	1	1	-inf
chr4	107728884	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-8.4634
chr17	39848713	39848763	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	97168003	97168040	LTR	RMER15-int	ERVL	chr3RMER15-int97167368	ProperStrand	11	1	-4.7901
chr17	39847128	39847228	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr5	11226931	11227021	protein_coding	Gm8897	intron	ENSMUSG00000091823	ProperStrand	2	1	-20.4235
chr17	39846759	39846832	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	35235790	35235807	protein_coding	Abhd16a	intron	ENSMUSG00000007036	ProperStrand	2	1	-5.3533
chr16	96150164	96150224	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	NonProperStrand	15	chr15	98931586	98931647	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	1	-15.5315
chr4	57951806	57951896	LINE	Lx4A	L1	chr4Lx4A57951189	NonProperStrand	7	chr4	57943923	57945202	LINE	Lx7	L1	chr4Lx757944624	ProperStrand	1	1	-inf
chr17	39843832	39843902	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	46590368	46590448	protein_coding	Ttbk1	intron	ENSMUSG00000015599	ProperStrand	78	2	-4.4400
chr10	115492376	115492393	protein_coding	Ptprr	intron	ENSMUSG00000020151	ProperStrand	5	chr1	134620946	134621008	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	1	-14.5582
chr11	102198807	102198854	SINE	B2_Mm2	B2	chr11B2_Mm2102198809	NonProperStrand	1	chr11	102197756	102198807	SINE	RSINE1	B4	chr11RSINE1102197734	NonProperStrand	1	1	-inf
mmu-miR-574-5p	1	16	miRNA	mmu-miR-574-5p	.	mmu-miR-574-5p	NonProperStrand	1	chr8	117185100	117185219	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-inf
chr10	128625225	128626081	LINE	L1Md_F2	L1	chr10L1Md_F2128625017	ProperStrand	7	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-16.1298
chr4	120891477	120891577	SINE	B1F1	Alu	chr4B1F1120891459	NonProperStrand	4	chr4	120891337	120891427	SINE	ID2	ID	chr4ID2120891363	NonProperStrand	4	4	-inf
chr1	51768957	51768987	LINE	L1Md_T	L1	chr1L1Md_T51768084	ProperStrand	8	chr9	123462076	123462154	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr17	39848598	39848709	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	121091663	121091681	protein_coding	Trp53bp1	intron	ENSMUSG00000043909	NonProperStrand	2	1	-8.7208
chr15	101466942	101467032	LINE	L1_Mur3	L1	chr15L1_Mur3101466403	ProperStrand	1	chr15	101467315	101467415	LINE	L1_Mur3	L1	chr15L1_Mur3101467130	ProperStrand	1	1	-inf
chr17	39846415	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	59015800	59015867	protein_coding	Dnajc25	intron	ENSMUSG00000070972	ProperStrand	2	1	-5.3533
chr3	34700461	34700546	SINE	B1_Mur4	Alu	chr3B1_Mur434700481	ProperStrand	1	chr14	27182361	27182384	antisense	4933413J09Rik	.	ENSMUSG00000021874	ProperStrand	66	1	-inf
chr7	91970762	91970852	LTR	ORR1A2-int	MaLR	chr7ORR1A2-int91969601	NonProperStrand	1	chr7	91467475	91467575	protein_coding	Arnt2	intron	ENSMUSG00000015709	ProperStrand	6	1	-inf
chr13	62148208	62148308	SINE	B2_Mm2	B2	chr13B2_Mm262148158	ProperStrand	2	chr13	62148085	62148175	Unknown	MurSatRep1	Unknown	chr13MurSatRep162147954	ProperStrand	6	2	-inf
chr4	131598203	131598222	protein_coding	Epb4.1	intron	ENSMUSG00000028906	ProperStrand	6	chr6	94184490	94184558	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-11.0179
chrX	157461179	157461961	LTR	ORR1B2	MaLR	chrXORR1B2157461026	ProperStrand	12	chrX	157461287	157462062	SINE	B2_Mm1t	B2	chrXB2_Mm1t157461900	ProperStrand	3	3	-inf
chr5	104923615	104923715	protein_coding-noncoding	Pkd2	utr5	ENSMUSG00000034462	ProperStrand	1	chr5	82078109	82078199	protein_coding	Lphn3	intron	ENSMUSG00000037605	NonProperStrand	27	1	-inf
chr18	77154159	77154262	LINE	Lx	L1	chr18Lx77154010	NonProperStrand	7	chr5	146261285	146261339	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-12.2953
chr12	98895755	98895855	LINE	Lx6	L1	chr12Lx698895278	NonProperStrand	1	chr12	98895876	98895966	LINE	Lx6	L1	chr12Lx698895838	NonProperStrand	1	1	-inf
chr12	86225091	86225191	Simple_repeat	(CAT)n	Simple_repeat	chr12(CAT)n86225056	NonProperStrand	1	chr12	86225277	86225367	Simple_repeat	(TCC)n	Simple_repeat	chr12(TCC)n86225167	NonProperStrand	1	1	-inf
chr17	39847778	39847831	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	48551648	48551727	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int48551419	NonProperStrand	1	1	-inf
chr14	105752517	105752607	LINE	L1MB2	L1	chr14L1MB2105752498	ProperStrand	1	chr14	105752710	105752810	SINE	B4A	B4	chr14B4A105752648	ProperStrand	1	1	-inf
chr18	49847962	49848046	LINE	Lx8	L1	chr18Lx849847065	NonProperStrand	2	chr11	95275829	95276446	protein_coding	Spop	intron	ENSMUSG00000057522	NonProperStrand	27	2	-inf
chr14	56960702	56960792	SINE	B4A	B4	chr14B4A56960549	NonProperStrand	1	chr14	56960827	56960927	Simple_repeat	(GAAA)n	Simple_repeat	chr14(GAAA)n56960816	ProperStrand	3	1	-inf
chr10	117700922	117701022	LINE	L1_Mus3	L1	chr10L1_Mus3117698253	NonProperStrand	1	chr1	58730570	58730660	protein_coding	Als2cr12	intron	ENSMUSG00000047528	ProperStrand	3	1	-inf
chr13	108083181	108083209	LTR	ORR1C1	MaLR	chr13ORR1C1108082830	NonProperStrand	4	chr3	153338284	153338322	protein_coding	St6galnac3	intron	ENSMUSG00000052544	ProperStrand	282	1	-14.5979
chr7	5409174	5409274	LINE	L1_Mus1	L1	chr7L1_Mus15409059	NonProperStrand	2	chr5	30060671	30060761	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	1	-inf
chr18	70455958	70456014	LINE	L1Md_F3	L1	chr18L1Md_F370455174	ProperStrand	1	chr1	177134314	177134379	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	1	-inf
chr7	5408948	5408966	LINE	L1_Rod	L1	chr7L1_Rod5408920	NonProperStrand	1	chr17	39847562	39847609	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	123461813	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr9	44914800	44920679	protein_coding	Gm10684	intron	ENSMUSG00000074385	ProperStrand	14	1	-3.7266
chr16	55939895	55939995	LTR	RLTR14	ERV1	chr16RLTR1455939795	ProperStrand	1	chr16	55940105	55940195	Other	RMER1B	Other	chr16RMER1B55940030	NonProperStrand	1	1	-inf
chr19	47246372	47246462	LTR	RMER16-int	ERVK	chr19RMER16-int47246060	ProperStrand	5	chr19	47246490	47246590	SINE	B1_Mus2	Alu	chr19B1_Mus247246461	ProperStrand	5	5	-inf
chr11	97248292	97258342	protein_coding	Socs7	utr3	ENSMUSG00000038485	NonProperStrand	32	chr11	97267645	97280256	protein_coding	Arhgap23	intron	ENSMUSG00000049807	NonProperStrand	18	1	-15.7354
chr17	39843489	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr14	14767658	14767684	antisense	Gm11100	.	ENSMUSG00000079357	ProperStrand	10	1	-5.9887
chr5	146260994	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	24180754	24184253	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	127	2	-6.1640
chr1	132990850	132990924	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	chr15	81649873	81649899	protein_coding	Tef	intron	ENSMUSG00000022389	ProperStrand	15	1	-12.7650
chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	chr17	23727046	23727174	protein_coding	Zfp13	intron	ENSMUSG00000062012	NonProperStrand	14	1	-14.1941
chr1	34018612	34018647	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr10	62868272	62868308	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-6.0306
chr8	71270972	71271042	LINE	L1Md_F2	L1	chr8L1Md_F271268802	ProperStrand	3	chr17	39847611	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr2	125101192	125101297	antisense	A530010F05Rik	.	ENSMUSG00000085797	NonProperStrand	5	chr16	19883801	19883817	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-14.0690
chr15	103015342	103015432	SINE	B1F1	Alu	chr15B1F1103015313	NonProperStrand	1	chr15	103015081	103015181	SINE	B1_Mus1	Alu	chr15B1_Mus1103015077	NonProperStrand	1	1	-inf
chr1	119104884	119104915	LINE	L1Md_F3	L1	chr1L1Md_F3119100539	ProperStrand	1	chr1	119106424	119106445	LINE	L1Md_F3	L1	chr1L1Md_F3119105880	ProperStrand	1	1	-inf
chr1	72849193	72849283	Low_complexity	CT-rich	Low_complexity	chr1CT-rich72849155	ProperStrand	18	chr1	72849294	72849645	SINE	B1_Mus1	Alu	chr1B1_Mus172849574	NonProperStrand	11	4	-inf
chr11	94988915	94988974	SINE	B1F	Alu	chr11B1F94988889	NonProperStrand	1	chr11	94989045	94989123	SINE	B1_Mur4	Alu	chr11B1_Mur494989051	NonProperStrand	1	1	-inf
chr17	39846664	39846689	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	3260344	3260360	SINE	B4A	B4	chr19B4A3260224	NonProperStrand	1	1	-inf
chr10	82955278	82955335	protein_coding	Aldh1l2	exon	ENSMUSG00000020256	ProperStrand	30	chr17	12915966	12916026	protein_coding	Igf2r	intron	ENSMUSG00000023830	ProperStrand	54	1	-13.6365
chr15	59030757	59030857	LTR	MLT1C	MaLR	chr15MLT1C59030727	NonProperStrand	4	chr15	59030857	59030947	LTR	MTE2b	MaLR	chr15MTE2b59030840	NonProperStrand	3	3	-inf
chr18	37767645	37767721	LTR	MTC-int	MaLR	chr18MTC-int37767195	NonProperStrand	1	chr5	146261079	146261107	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr11	86060009	86060082	protein_coding	Ints2	intron	ENSMUSG00000018068	ProperStrand	2	chr2	104564092	104564176	protein_coding	Depdc7	intron	ENSMUSG00000027173	NonProperStrand	31	1	-20.7076
chr4	137788379	137788464	protein_coding	Hp1bp3	intron	ENSMUSG00000028759	NonProperStrand	73	chr4	137764333	137764367	protein_coding	Eif4g3	utr3	ENSMUSG00000028760	NonProperStrand	48	1	-12.0777
chr16	91614387	91614487	lincRNA	Gm15964	intron	ENSMUSG00000085337	NonProperStrand	1	chr16	91614505	91614595	protein_coding	Dnajc28	utr3	ENSMUSG00000039763	ProperStrand	1	1	-inf
chr9	72102018	72102070	LTR	RLTR41	ERV1	chr9RLTR4172101994	ProperStrand	1	chr9	72100747	72100814	LTR	RMER19A	ERVK	chr9RMER19A72100469	ProperStrand	1	1	-inf
chr16	18240161	18240953	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	38	chr12	78350926	78350989	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.8008
chr13	103245797	103245852	LTR	RLTR25B	ERVK	chr13RLTR25B103245507	NonProperStrand	1	chr4	132270075	132270148	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-inf
chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	71276751	71279533	protein_coding	Hat1	exon	ENSMUSG00000027018	NonProperStrand	3	1	-4.3017
chr1	164018963	164019026	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	chr12	110692408	110692637	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	1	-8.6952
chr7	112686313	112686403	SINE	B2_Mm2	B2	chr7B2_Mm2112686232	NonProperStrand	5	chr7	112686440	112686540	SINE	ID_B1	B4	chr7ID_B1112686435	NonProperStrand	1	1	-inf
chr8	46032047	46032071	LINE	L2	L2	chr8L246031837	NonProperStrand	1	chr2	104492894	104493019	protein_coding	Cstf3	intron	ENSMUSG00000027176	NonProperStrand	10	1	-inf
chr11	109012019	109012050	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr4	53481585	53481606	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	1	-11.5024
chr6	86673395	86673452	protein_coding	Gmcl1	intron	ENSMUSG00000001157	ProperStrand	15	chr9	123461826	123461878	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr6	143204809	143207094	lincRNA	D6Ertd474e	intron	ENSMUSG00000072679	ProperStrand	65	chr9	123461957	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-3.6120
chr16	61596750	61596766	LINE	Lx2A	L1	chr16Lx2A61596542	NonProperStrand	1	chr17	39846430	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	74272831	74273014	LINE	L1Md_F2	L1	chrXL1Md_F274272821	ProperStrand	9	chrX	74270992	74271015	LTR	MTA_Mm	MaLR	chrXMTA_Mm74270870	ProperStrand	4	1	-inf
chr17	39847165	39847221	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	22042523	22042929	protein_coding	Zfp184	intron	ENSMUSG00000006720	NonProperStrand	16	2	-3.8817
chr4	43492783	43492801	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr6	136804218	136804273	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	1	-8.4162
chr3	98716503	98716520	LINE	Lx7	L1	chr3Lx798716434	NonProperStrand	1	chr15	64034957	64035018	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	1	-inf
chr2	18372099	18372199	DNA	MER2	MER2_type	chr2MER218371906	NonProperStrand	1	chr2	18372269	18372359	LTR	RMER4A	ERVK	chr2RMER4A18372230	NonProperStrand	1	1	-inf
chr16	15645070	15645119	protein_coding	Prkdc	intron	ENSMUSG00000022672	ProperStrand	42	chr4	21874351	21874437	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	ProperStrand	29	1	-14.2123
chr5	66137053	66137153	LTR	RMER13B	ERVK	chr5RMER13B66136819	NonProperStrand	1	chr5	66136656	66136746	Simple_repeat	(GAAA)n	Simple_repeat	chr5(GAAA)n66136636	ProperStrand	1	1	-inf
chr12	55296861	55296925	protein_coding	Egln3	intron	ENSMUSG00000035105	ProperStrand	24	chr5	130906643	130906659	protein_coding	Caln1	intron	ENSMUSG00000060371	NonProperStrand	37	1	-14.8688
chr1	47240911	47241011	DNA	BLACKJACK	AcHobo	chr1BLACKJACK47240331	NonProperStrand	1	chr14	33967659	33967749	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr9	123461957	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	57443002	57443083	protein_coding	Ulk3	utr3	ENSMUSG00000032308	NonProperStrand	19	1	-3.1531
chr19	8724001	8724031	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr6	39420167	39420187	protein_coding	Dennd2a	intron	ENSMUSG00000038456	ProperStrand	103	1	-11.9125
chr7	11112674	11112774	protein_coding	Vmn1r68	exon	ENSMUSG00000047031	ProperStrand	1	chr12	76938690	76939991	protein_coding	Syne2	intron	ENSMUSG00000063450	NonProperStrand	141	1	-inf
chr7	16611007	16611108	SINE	B1_Mur4	Alu	chr7B1_Mur416610933	ProperStrand	3	chr7	16611129	16611219	SINE	B2_Mm2	B2	chr7B2_Mm216611099	ProperStrand	3	3	-inf
chr17	50420126	50420177	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr9	123461811	123462161	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	24	-inf
chr3	119379281	119379300	LINE	L1_Mus3	L1	chr3L1_Mus3119377048	NonProperStrand	4	chr4	123596354	123596383	protein_coding-noncoding	Rragc	utr5	ENSMUSG00000028646	NonProperStrand	1	1	-inf
chr16	80703021	80703121	LTR	MTB-int	MaLR	chr16MTB-int80702967	NonProperStrand	1	chr16	80702872	80702962	LTR	MTB	MaLR	chr16MTB80702689	NonProperStrand	1	1	-inf
chr5	146261160	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	81585899	81585989	protein_coding	Zc3h7b	intron	ENSMUSG00000022390	ProperStrand	45	1	-5.6243
chr17	79842743	79842767	SINE	B4	B4	chr17B479842716	NonProperStrand	1	chr17	56602975	56603601	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	1	-inf
chr11	101552748	101552848	LTR	RMER17C-int	ERVK	chr11RMER17C-int101552715	NonProperStrand	1	chr11	101553058	101553148	LTR	RMER17C	ERVK	chr11RMER17C101553021	NonProperStrand	1	1	-inf
chr17	39847759	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	126927849	126933029	protein_coding	Ncaph	intron	ENSMUSG00000034906	ProperStrand	4	1	-3.7035
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-8.3376
chr18	14751801	14751862	LINE	L1_Mus3	L1	chr18L1_Mus314751368	NonProperStrand	2	chr18	14745551	14745609	LINE	Lx	L1	chr18Lx14745039	NonProperStrand	1	1	-inf
chr17	39845532	39845632	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr4	33246471	33246500	protein_coding	Gabrr1	intron	ENSMUSG00000028280	NonProperStrand	25	1	-3.8093
chr18	74040892	74040973	protein_coding-noncoding	Mro	utr5	ENSMUSG00000064036	NonProperStrand	1	chr15	4064967	4065045	protein_coding	Oxct1	intron	ENSMUSG00000022186	ProperStrand	51	1	-inf
chr4	151789509	151789632	protein_coding	Kcnab2	intron	ENSMUSG00000028931	ProperStrand	216	chr1	131573997	131574031	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-6.4195
chr17	39847506	39847574	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	129987230	129987308	protein_coding	Fabp3	intron	ENSMUSG00000028773	ProperStrand	1	1	-inf
chr18	45615359	45615403	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	chr17	19518579	19518600	protein_coding	Vmn2r99	intron	ENSMUSG00000090304	NonProperStrand	1	1	-inf
chr5	146261007	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	65857511	65857586	protein_coding	Kcnq3	intron	ENSMUSG00000056258	NonProperStrand	30	1	-6.4271
chr11	32746055	32746137	DNA	MER2	MER2_type	chr11MER232745807	NonProperStrand	1	chr13	97190541	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr18	40792715	40792766	LTR	ORR1B2	MaLR	chr18ORR1B240792534	ProperStrand	6	chr13	97190562	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr5	146948925	146950544	LINE	L1VL4	L1	chr5L1VL4146947837	NonProperStrand	2	chr5	146951273	146951881	LTR	RLTR19C	ERVK	chr5RLTR19C146951154	ProperStrand	1	1	-inf
chr7	75771397	75771431	LINE	L1Md_F2	L1	chr7L1Md_F275769915	NonProperStrand	42	chr3	130726919	130728824	LTR	MT2A	ERVL	chr3MT2A130728698	NonProperStrand	5	1	-18.0510
chr17	38043290	38043389	LTR	MMETn-int	ERVK	chr17MMETn-int38043219	ProperStrand	1	chr17	38043132	38043222	LTR	RLTRETN_Mm	ERVK	chr17RLTRETN_Mm38042981	ProperStrand	1	1	-inf
chr2	152321330	152321430	LINE	Lx	L1	chr2Lx152321054	NonProperStrand	2	chr2	152321443	152321533	Other	RMER1B	Other	chr2RMER1B152321457	ProperStrand	2	1	-19.8939
chr18	33851081	33851112	LINE	L1_Mus4	L1	chr18L1_Mus433850603	NonProperStrand	3	chr13	37876678	37876759	protein_coding	Rreb1	intron	ENSMUSG00000039087	ProperStrand	91	1	-17.6227
chr17	39847880	39847938	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	110808457	110808499	lincRNA	Gm17639	intron	ENSMUSG00000090521	ProperStrand	5	1	-3.2379
chr19	3496644	3507324	protein_coding	Ppp6r3	exon	ENSMUSG00000024908	ProperStrand	213	chrX	95940783	95940800	protein_coding	Ophn1	intron	ENSMUSG00000031214	ProperStrand	39	1	-10.3505
chr9	21833538	21833556	protein_coding	Elavl3	intron	ENSMUSG00000003410	ProperStrand	162	chr5	114851976	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-7.3217
chr3	69033228	69033974	LTR	MTA_Mm-int	MaLR	chr3MTA_Mm-int69032945	NonProperStrand	4	chr5	107212518	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	1	-17.9108
chr17	78735650	78735704	protein_coding	Crim1	intron	ENSMUSG00000024074	NonProperStrand	26	chr8	72498541	72498579	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	1	-11.7840
chr5	142871353	142871396	SINE	B4	B4	chr5B4142871293	ProperStrand	1	chr5	142871651	142871754	SINE	ID_B1	B4	chr5ID_B1142871621	NonProperStrand	1	1	-inf
chr2	90902919	90904593	protein_coding-noncoding	Slc39a13	utr3	ENSMUSG00000002105	ProperStrand	2	chr2	90904462	90904654	protein_coding	Slc39a13	intron	ENSMUSG00000002105	ProperStrand	5	2	-inf
chr10	100799070	100799160	LINE	Lx5	L1	chr10Lx5100799072	ProperStrand	1	chr10	100798934	100799034	LINE	Lx6	L1	chr10Lx6100798821	ProperStrand	1	1	-inf
chr11	106501241	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	28	chr7	31108033	31108104	protein_coding	E130208F15Rik	utr3	ENSMUSG00000074210	NonProperStrand	1	1	-inf
chr4	56757268	56758299	LTR	RLTR14	ERV1	chr4RLTR1456758136	NonProperStrand	4	chr4	56755336	56757173	protein_coding	Actl7a	exon	ENSMUSG00000070979	NonProperStrand	1	1	-inf
chr15	66599130	66599220	protein_coding	Tg	intron	ENSMUSG00000053469	ProperStrand	17	chr18	42148975	42149075	protein_coding	Grxcr2	intron	ENSMUSG00000073574	ProperStrand	2	1	-21.3416
chr4	139477962	139478052	LINE	L1M4	L1	chr4L1M4139477855	NonProperStrand	7	chr4	139478048	139478149	SINE	B1_Mur2	Alu	chr4B1_Mur2139478036	ProperStrand	4	4	-inf
chr8	94864673	94864705	protein_coding	4933436C20Rik	intron	ENSMUSG00000031736	ProperStrand	3	chr8	124238529	124238610	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-13.2835
chr10	94789307	94789407	LTR	RMER6A	ERVK	chr10RMER6A94789164	NonProperStrand	1	chr10	94789619	94789709	SINE	PB1D10	Alu	chr10PB1D1094789606	ProperStrand	1	1	-inf
chr17	21819499	21819550	LINE	L1M4	L1	chr17L1M421819457	ProperStrand	1	chr4	20484985	20485003	protein_coding	Nkain3	intron	ENSMUSG00000055761	NonProperStrand	11	1	-inf
chr7	6636640	6636711	protein_coding	Zim1	intron	ENSMUSG00000002266	ProperStrand	65	chr11	60169320	60169359	protein_coding	Lrrc48	intron	ENSMUSG00000056598	ProperStrand	98	1	-10.8755
chr16	93905010	93905907	protein_coding-noncoding	Chaf1b	utr5	ENSMUSG00000022945	ProperStrand	12	chr16	93905911	93906011	protein_coding	Chaf1b	intron	ENSMUSG00000022945	ProperStrand	29	2	-20.1500
chr6	82978274	82978364	protein_coding-noncoding	D6Mm5e	utr5	ENSMUSG00000030041	ProperStrand	1	chr6	82978609	82978709	protein_coding	D6Mm5e	intron	ENSMUSG00000030041	ProperStrand	2	1	-inf
chr17	39847868	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	60571095	60571188	SINE	RSINE1	B4	chr19RSINE160571044	NonProperStrand	1	1	-inf
chr11	88644625	88644715	LINE	L1ME2	L1	chr11L1ME288644623	NonProperStrand	10	chr11	88644526	88644626	LTR	MTD	MaLR	chr11MTD88644196	NonProperStrand	3	2	-20.5283
chr5	97477670	97477740	protein_coding	Bmp2k	intron	ENSMUSG00000034663	ProperStrand	31	chr9	31150409	31150500	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	1	-11.4911
chr7	24819476	24819576	LINE	L1_Mm	L1	chr7L1_Mm24817437	NonProperStrand	1	chr7	24819680	24819770	LTR	LTRIS2	ERV1	chr7LTRIS224819676	NonProperStrand	1	1	-inf
chr10	42214385	42214485	SINE	B3A	B2	chr10B3A42214365	NonProperStrand	3	chr10	42234324	42234414	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	2	-21.7326
chr17	39846759	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	121279030	121279087	LTR	IAPEz-int	ERVK	chr5IAPEz-int121276833	NonProperStrand	1	1	-inf
chr4	34567361	34567379	protein_coding	Rars2	intron	ENSMUSG00000028292	NonProperStrand	40	chr5	108070495	108070606	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	1	-11.8962
chr14	66975446	66975477	protein_coding	Stmn4	intron	ENSMUSG00000022044	NonProperStrand	23	chr5	77276905	77277017	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	1	-11.7158
chr2	34020418	34020436	LTR	ORR1A3	MaLR	chr2ORR1A334020122	ProperStrand	1	chr9	123461811	123461928	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39848124	39848167	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	118837364	118837426	LTR	RMER2	ERV1	chr2RMER2118836972	ProperStrand	1	1	-inf
chr17	39846660	39846734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	130655094	130655168	SINE	PB1D10	Alu	chr7PB1D10130655084	NonProperStrand	1	1	-inf
chr8	79381804	79381863	lincRNA	Gm10649	intron	ENSMUSG00000074235	ProperStrand	82	chr11	48803139	48803201	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-8.6435
chr8	79596027	79596149	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	chrX	166291209	166291225	protein_coding	Mid1	intron	ENSMUSG00000035299	ProperStrand	37	1	-11.8550
chr17	45081744	45081847	protein_coding	Supt3h	intron	ENSMUSG00000038954	ProperStrand	67	chr7	142460922	142460940	protein_coding	Nps	intron	ENSMUSG00000073804	ProperStrand	2	1	-19.1908
chr11	76217511	76217527	LTR	MLT2B4	ERVL	chr11MLT2B476217340	ProperStrand	1	chr17	39848247	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr17	56607718	56607754	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	78	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.9952
chr19	4194507	4194577	protein_coding	Ppp1ca	exon	ENSMUSG00000040385	ProperStrand	19	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-15.6187
chr17	82751114	82751214	LTR	MLT1F	MaLR	chr17MLT1F82751139	NonProperStrand	1	chr14	79861628	79861718	protein_coding	Wbp4	utr3	ENSMUSG00000022023	ProperStrand	22	1	-inf
chr3	41574250	41574289	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr16	24987590	24987663	protein_coding	Lpp	utr3	ENSMUSG00000033306	ProperStrand	255	1	-8.4026
chr8	43358450	43358540	LINE	Lx6	L1	chr8Lx643358186	ProperStrand	1	chr3	118599984	118600084	protein_coding	Dpyd	intron	ENSMUSG00000033308	NonProperStrand	32	1	-inf
chr9	27355932	27356027	LTR	MTEb-int	MaLR	chr9MTEb-int27355517	NonProperStrand	3	chr9	108498542	108498693	protein_coding	P4htm	intron	ENSMUSG00000006675	NonProperStrand	85	1	-17.6473
chr10	81193928	81193999	LTR	MYSERV16_I-int	ERVK	chr10MYSERV16_I-int81193819	NonProperStrand	1	chr5	146261005	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr9	115254772	115254806	LTR	MLT1K	MaLR	chr9MLT1K115254710	ProperStrand	2	chr9	115255077	115255199	SINE	RSINE1	B4	chr9RSINE1115255017	ProperStrand	2	2	-inf
chr2	128681917	128681950	SINE	B1_Mur1	Alu	chr2B1_Mur1128681888	NonProperStrand	1	chr3	86141711	86141734	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-inf
chr17	8510806	8510896	protein_coding-noncoding	Sft2d1	utr5	ENSMUSG00000073468	NonProperStrand	1	chr17	8510552	8510652	protein_coding	Sft2d1	intron	ENSMUSG00000073468	NonProperStrand	1	1	-inf
chr13	23585755	23934024	protein_coding	Slc17a3	intron	ENSMUSG00000036083	NonProperStrand	4	chr13	23684222	23684299	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	NonProperStrand	15	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr2	132136731	132136795	protein_coding	Cds2	utr3	ENSMUSG00000058793	NonProperStrand	40	1	-10.6249
chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	chr18	10151015	10151142	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-9.6558
chr17	33652315	33658879	LTR	RMER17D2	ERVK	chr17RMER17D233657646	NonProperStrand	2	chr11	101442453	101442752	protein_coding	Nbr1	utr3	ENSMUSG00000017119	ProperStrand	27	1	-21.9988
chr4	148441439	148441468	protein_coding	Pex14	intron	ENSMUSG00000028975	ProperStrand	5	chr3	122452047	122452086	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-14.5857
chrX	75524626	75524675	LTR	ETnERV2-int	ERVK	chrXETnERV2-int75524074	ProperStrand	1	chrX	75525252	75525356	LTR	ETnERV2-int	ERVK	chrXETnERV2-int75524771	ProperStrand	2	1	-inf
chr10	83370825	83370925	LTR	MLT1F1	MaLR	chr10MLT1F183370812	ProperStrand	6	chr10	83370733	83370823	LTR	RMER17C	ERVK	chr10RMER17C83370288	ProperStrand	6	4	-inf
chr17	39846781	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	80069926	80070047	protein_coding	Adat3	exon	ENSMUSG00000035370	NonProperStrand	11	2	-3.3422
chrX	60056224	60056240	LINE	Lx7	L1	chrXLx760056075	ProperStrand	1	chr1	179067399	179067511	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	1	-inf
chr13	62675559	62675649	LINE	Lx2A1	L1	chr13Lx2A162674956	NonProperStrand	2	chr13	62673887	62675295	LTR	MT2A	ERVL	chr13MT2A62673741	ProperStrand	1	1	-inf
chr19	45388607	45388652	LTR	ORR1B2	MaLR	chr19ORR1B245388603	NonProperStrand	1	chr19	45389216	45389291	SINE	B3	B2	chr19B345389217	NonProperStrand	1	1	-inf
chr17	39848158	39848182	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	25623715	25623796	processed_transcript	Gm5893	.	ENSMUSG00000011350	ProperStrand	7	1	-5.4467
chr1	90958657	90958747	LINE	L1MA7	L1	chr1L1MA790958634	NonProperStrand	1	chr1	90958780	90958880	SINE	B1_Mm	Alu	chr1B1_Mm90958756	NonProperStrand	1	1	-inf
chr17	39846648	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	4777878	4777968	SINE	B1_Mur3	Alu	chr19B1_Mur34777903	NonProperStrand	2	1	-5.3533
chr9	17987804	17987834	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr6	113269895	113269978	protein_coding	Brpf1	intron	ENSMUSG00000001632	ProperStrand	30	1	-12.5430
chr10	85511519	85511552	protein_coding	Fbxo7	utr3	ENSMUSG00000001786	ProperStrand	12	chr10	85529790	85529896	protein_coding	Syn3	intron	ENSMUSG00000059602	NonProperStrand	48	3	-20.3024
chr10	62813589	62813690	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr5	36312348	36312383	protein_coding	Afap1	intron	ENSMUSG00000029094	NonProperStrand	22	1	-11.3776
chr1	36105875	36105895	LINE	Lx8	L1	chr1Lx836105640	ProperStrand	2	chr17	39847608	39847693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr13	44869586	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr10	70387020	70387042	protein_coding	4930533K18Rik	intron	ENSMUSG00000047692	ProperStrand	31	1	-5.7785
chr17	15530676	15530776	LTR	MTD-int	MaLR	chr17MTD-int15530681	NonProperStrand	2	chr17	15530206	15530296	LTR	RLTR13B3	ERVK	chr17RLTR13B315530185	NonProperStrand	2	2	-inf
chr17	39847611	39847637	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	78645995	78646113	miRNA	AC126690.1	.	ENSMUSG00000080402	ProperStrand	1	1	-inf
chr5	31534106	31534174	LINE	Lx6	L1	chr5Lx631534058	ProperStrand	1	chr5	31534173	31534889	LINE	Lx6	L1	chr5Lx631534172	ProperStrand	1	1	-inf
chr2	119150380	119150480	lincRNA	Gm14207	intron	ENSMUSG00000074912	ProperStrand	22	chr4	86062260	86062350	protein_coding	Adamtsl1	intron	ENSMUSG00000066113	ProperStrand	23	2	-inf
chr4	146478807	146478907	lincRNA	Gm16889	intron	ENSMUSG00000084976	NonProperStrand	52	chr4	147274441	147274531	protein_coding	Mfn2	intron	ENSMUSG00000029020	NonProperStrand	3	1	-18.7694
chr5	147526952	147526968	SINE	ID4	ID	chr5ID4147526942	ProperStrand	3	chr7	30316589	30316682	protein_coding	4932431P20Rik	intron	ENSMUSG00000074224	ProperStrand	16	1	-inf
chr17	39848498	39848588	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	93032477	93032577	LTR	RLTRETN_Mm	ERVK	chr1RLTRETN_Mm93032296	NonProperStrand	1	1	-inf
chr12	110471186	110471296	LINE	L1Md_F3	L1	chr12L1Md_F3110469843	ProperStrand	4	chr11	104422264	104422311	processed_transcript	Gm11665	.	ENSMUSG00000086932	ProperStrand	17	1	-21.4578
chr13	8821780	8821870	protein_coding	Wdr37	intron	ENSMUSG00000021147	NonProperStrand	6	chr13	8651297	8651397	protein_coding	Adarb2	intron	ENSMUSG00000052551	NonProperStrand	42	1	-17.6630
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr1	89869733	89869767	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	1	-10.1636
chr15	83149718	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	chr6	72838326	72838393	protein_coding	Kcmf1	intron	ENSMUSG00000055239	ProperStrand	10	1	-14.0034
chr15	80082858	80082920	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr11	23271973	23272005	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-6.2315
chr10	26477077	26477177	LTR	RLTR18	ERVK	chr10RLTR1826476949	ProperStrand	1	chr10	26476813	26476903	SINE	B1_Mur2	Alu	chr10B1_Mur226476754	ProperStrand	1	1	-inf
chr11	109011676	109011720	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	87238359	87238393	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	1	-3.6694
chr3	22287006	22287106	LINE	L1Md_F2	L1	chr3L1Md_F222286953	NonProperStrand	4	chr3	22287116	22287206	LINE	L1Md_F2	L1	chr3L1Md_F222287087	NonProperStrand	4	4	-inf
chr3	90211769	90211802	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	chr2	5379299	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.9680
chr7	145231035	145231135	LINE	Lx7	L1	chr7Lx7145230825	NonProperStrand	3	chr7	145239930	145240020	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n145239933	NonProperStrand	3	1	-20.2168
chr7	47188515	47188615	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr15	56524165	56524255	processed_transcript	Has2as	.	ENSMUSG00000086541	ProperStrand	1	1	-inf
chr17	39846396	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	81374858	81377714	SINE	PB1D9	Alu	chr15PB1D981374806	NonProperStrand	1	1	-inf
chr6	50183785	50183839	protein_coding	Dfna5	intron	ENSMUSG00000029821	NonProperStrand	23	chr8	61112306	61112394	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-11.5688
chr10	34350741	34350831	LINE	Lx	L1	chr10Lx34350690	NonProperStrand	1	chr10	34350619	34350719	LTR	IAPLTR2b	ERVK	chr10IAPLTR2b34350385	NonProperStrand	1	1	-inf
chr11	89017153	89017187	SINE	B3A	B2	chr11B3A89017143	NonProperStrand	3	chr9	123461957	123461981	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-12.1476
chr1	82746451	82746519	protein_coding	Mff	intron	ENSMUSG00000026150	ProperStrand	14	chr10	79550111	79550166	protein_coding	Sbno2	intron	ENSMUSG00000035673	ProperStrand	55	1	-15.1581
chr11	109011679	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	2	-5.0100
chr6	135236092	135236147	LINE	L1Md_T	L1	chr6L1Md_T135231400	NonProperStrand	2	chr12	78350921	78350986	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-13.3256
chr17	39846410	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	39001602	39005630	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	10	-5.1518
chr1	128121146	128121289	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	chr4	56903626	56903645	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	140	1	-8.2377
chr11	52236914	52242635	LINE	L1Md_F3	L1	chr11L1Md_F352242464	NonProperStrand	1	chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	1	-inf
chr10	17124520	17124543	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr9	123461802	123462188	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	11	-9.2866
chr2	30098106	30098123	protein_coding	Lrrc8a	intron	ENSMUSG00000007476	ProperStrand	6	chr4	10998833	10998959	protein_coding	2310030N02Rik	intron	ENSMUSG00000050323	ProperStrand	19	1	-19.0482
chr17	50420127	50420176	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr13	112578199	112578302	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	2	-4.1491
chr17	39847366	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	64489300	64489349	SINE	B3	B2	chr18B364489185	NonProperStrand	1	1	-inf
chr17	39848162	39848264	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	20696749	20696781	protein_coding	Ssxa1	intron	ENSMUSG00000062814	ProperStrand	24	1	-3.0353
chr4	7752083	7752183	LTR	ORR1D1	MaLR	chr4ORR1D17751990	ProperStrand	1	chr4	7749425	7749515	Other	RMER1B	Other	chr4RMER1B7748566	ProperStrand	1	1	-inf
chr5	88642445	88642535	LINE	Lx2	L1	chr5Lx288642350	ProperStrand	1	chr17	39847701	39847758	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	34081196	34081247	non_coding	Sox2ot	.	ENSMUSG00000090828	NonProperStrand	20	chr9	123462036	123462075	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr6	85930121	85930140	LINE	L1Md_F2	L1	chr6L1Md_F285929682	NonProperStrand	3	chr2	90395146	90395175	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	2	-19.7833
chrX	101705129	101705210	LINE	L1_Mus1	L1	chrXL1_Mus1101705115	NonProperStrand	1	chr17	39847844	39847908	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	168706466	168706556	SINE	B2_Mm2	B2	chr2B2_Mm2168706492	NonProperStrand	1	chr2	168706666	168706766	SINE	B2_Mm2	B2	chr2B2_Mm2168706607	NonProperStrand	1	1	-inf
chr6	3201474	3201564	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	139379450	139379550	Simple_repeat	(TAGA)n	Simple_repeat	chr5(TAGA)n139379464	NonProperStrand	1	1	-inf
chr12	57238900	57239000	LTR	RMER17B	ERVK	chr12RMER17B57238874	ProperStrand	4	chrX	140467751	140468905	Satellite	MurSAT1	Satellite	chrXMurSAT1140467683	ProperStrand	2	2	-inf
chr5	146261068	146261099	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	17776878	17776929	protein_coding	Klhl22	exon	ENSMUSG00000022750	ProperStrand	46	1	-5.5811
chr13	97190568	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr14	8216420	8216496	protein_coding	Gm10339	intron	ENSMUSG00000071591	NonProperStrand	8	1	-9.2031
chr1	177225218	177225311	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	chr1	167340515	167340540	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	1	-7.8777
chr6	49214691	49214744	SINE	B1_Mur4	Alu	chr6B1_Mur449214685	ProperStrand	3	chr13	77912667	77912761	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-17.9778
chr13	40919905	40919944	LTR	ORR1A2	MaLR	chr13ORR1A240919802	ProperStrand	6	chr13	40920649	40920676	Low_complexity	GA-rich	Low_complexity	chr13GA-rich40920510	ProperStrand	1	1	-inf
chr16	35981616	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chrX	13286131	13287246	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-7.9507
chr15	59030745	59030798	LTR	MLT1C	MaLR	chr15MLT1C59030727	NonProperStrand	4	chr17	39847734	39847777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr15	59584042	59584117	LTR	ORR1E	MaLR	chr15ORR1E59583865	NonProperStrand	1	chr4	107069287	107069372	protein_coding	Tmem48	intron	ENSMUSG00000028614	ProperStrand	31	1	-inf
chr17	39848247	39848330	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	37481546	37481619	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	1	-3.1941
chr6	91741239	91741312	protein_coding	Grip2	intron	ENSMUSG00000030098	NonProperStrand	217	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-9.5135
chr17	39847678	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	97758976	97759165	SINE	B4A	B4	chr15B4A97758841	NonProperStrand	1	1	-inf
chr8	85857111	85857210	LINE	L2a	L2	chr8L2a85857042	NonProperStrand	1	chr2	120513642	120513666	protein_coding	Stard9	intron	ENSMUSG00000033705	NonProperStrand	75	1	-inf
chr13	29434857	29434955	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr15	99149030	99149089	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	1	-6.9731
chr8	85002718	85002868	Simple_repeat	(GGAA)n	Simple_repeat	chr8(GGAA)n85002645	ProperStrand	6	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.1685
mmu-miR-1187	2	17	miRNA	mmu-miR-1187	.	mmu-miR-1187	ProperStrand	3	chr6	85591757	85591846	protein_coding	Alms1	intron	ENSMUSG00000063810	ProperStrand	47	1	-18.8988
chr1	187827740	187827780	LINE	L1_Mus1	L1	chr1L1_Mus1187825515	ProperStrand	1	chr17	39847491	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	113796332	113796406	LINE	L1Md_F	L1	chr13L1Md_F113793683	NonProperStrand	15	chr4	121149572	121149650	pseudogene	Gm12880	.	ENSMUSG00000082821	ProperStrand	7	1	-18.9688
chr14	77520805	77520890	LINE	L1Md_F	L1	chr14L1Md_F77516901	NonProperStrand	4	chr17	39847347	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr11	23351926	23351988	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	chr15	98652931	98656622	protein_coding	Prkag1	intron	ENSMUSG00000067713	ProperStrand	52	1	-10.4319
chr8	85031237	85031326	LINE	L1VL4	L1	chr8L1VL485031254	ProperStrand	1	chr19	27986478	27986524	protein_coding	Rfx3	intron	ENSMUSG00000040929	ProperStrand	67	1	-inf
chr13	54099729	54099802	LINE	Lx8	L1	chr13Lx854099178	ProperStrand	6	chr13	54098723	54098750	LTR	RLTR15	ERVK	chr13RLTR1554098477	NonProperStrand	1	1	-inf
chr18	61645394	61645497	LINE	L2b	L2	chr18L2b61645294	NonProperStrand	1	chr18	61644268	61644291	SINE	MIR	MIR	chr18MIR61644201	ProperStrand	1	1	-inf
chr14	14591243	14591343	LINE	L1Md_F2	L1	chr14L1Md_F214590348	NonProperStrand	1	chr14	14591479	14591569	LINE	L1VL4	L1	chr14L1VL414591331	ProperStrand	1	1	-inf
chr6	3201486	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	82485080	82491008	protein_coding	Zdhhc21	intron	ENSMUSG00000028403	ProperStrand	77	2	-4.3475
chr15	98731785	98731885	SINE	B3	B2	chr15B398731744	NonProperStrand	1	chr15	98731999	98732089	SINE	B3	B2	chr15B398731912	NonProperStrand	1	1	-inf
chr14	112711105	112711195	LINE	L1MC1	L1	chr14L1MC1112710989	NonProperStrand	1	chr14	112711259	112711359	LINE	L1MC1	L1	chr14L1MC1112711260	NonProperStrand	1	1	-inf
chr17	39848197	39848254	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	114671395	114671491	protein_coding	Cmtm7	intron	ENSMUSG00000032436	ProperStrand	11	2	-7.6458
chr13	55246089	55246189	LINE	L1Md_A	L1	chr13L1Md_A55245712	ProperStrand	1	chr11	85778116	85778206	SINE	B3	B2	chr11B385778094	NonProperStrand	3	1	-inf
chrX	104321019	104321109	LINE	L1Md_A	L1	chrXL1Md_A104321006	NonProperStrand	1	chrX	104320901	104321001	LINE	Lx4A	L1	chrXLx4A104320607	ProperStrand	1	1	-inf
chr15	34099543	34114093	SINE	B2_Mm2	B2	chr15B2_Mm234099599	ProperStrand	1	chr13	99513178	99513220	protein_coding	Fcho2	intron	ENSMUSG00000041685	ProperStrand	31	1	-inf
chr4	120888997	120889362	LTR	MTD	MaLR	chr4MTD120888849	ProperStrand	3	chr4	120886948	120887038	protein_coding	Rlf	intron	ENSMUSG00000049878	NonProperStrand	13	3	-inf
chr17	70963691	70963773	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr1	58720364	58720416	protein_coding	Als2cr12	intron	ENSMUSG00000047528	NonProperStrand	24	1	-8.0398
chr17	39847322	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	113578469	113581451	protein_coding	Vhl	utr3	ENSMUSG00000033933	ProperStrand	7	1	-3.6430
chr10	82866526	82866626	LTR	MMETn-int	ERVK	chr10MMETn-int82862653	NonProperStrand	18	chr10	82869823	82869873	LTR	RLTR10D	ERVK	chr10RLTR10D82869719	NonProperStrand	1	1	-inf
chr1	77650709	77650809	LINE	Lx5	L1	chr1Lx577650604	ProperStrand	1	chr1	77650336	77650426	LTR	RMER6C	ERVK	chr1RMER6C77649990	NonProperStrand	1	1	-inf
chr8	106761309	106761333	protein_coding	Tk2	intron	ENSMUSG00000035824	ProperStrand	8	chr8	122969683	122969763	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-10.3218
chr17	39848200	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	56005867	56005907	protein_coding	Zfp119a	exon	ENSMUSG00000057835	ProperStrand	21	4	-11.3815
chr2	22744886	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	114906472	114906603	protein_coding	Vgll4	intron	ENSMUSG00000030315	ProperStrand	98	1	-5.8408
chr2	180916198	180916288	LTR	RMER12	ERVK	chr2RMER12180916199	NonProperStrand	1	chr2	180916070	180916170	SINE	ID_B1	B4	chr2ID_B1180916057	NonProperStrand	1	1	-inf
chr2	177188991	177189081	LTR	MTE-int	MaLR	chr2MTE-int177188911	ProperStrand	1	chr2	177188691	177188791	LTR	ORR1D1	MaLR	chr2ORR1D1177188510	ProperStrand	1	1	-inf
chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	113065263	113065342	LTR	MMERVK10C-int	ERVK	chr3MMERVK10C-int113062453	NonProperStrand	1	1	-inf
chr2	67763264	67763300	LINE	L1_Rod	L1	chr2L1_Rod67761848	NonProperStrand	1	chr9	36764809	36764855	protein_coding	Pknox2	intron	ENSMUSG00000035934	ProperStrand	37	1	-inf
chr9	19657863	19657953	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr6	78926466	78926567	SINE	B3	B2	chr6B378926379	ProperStrand	1	1	-inf
chr8	19136537	19136627	LINE	L1_Mur2	L1	chr8L1_Mur219136288	ProperStrand	1	chr8	19224663	19224763	LTR	RLTR22_Mus	ERVK	chr8RLTR22_Mus19223861	ProperStrand	1	1	-inf
chr3	8977986	8978026	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	chr3	35898912	35898959	protein_coding	Mccc1	intron	ENSMUSG00000027709	ProperStrand	5	1	-14.1195
chr15	103390874	103390901	LINE	Lx6	L1	chr15Lx6103388246	ProperStrand	7	chr16	43103629	43103666	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	1	-13.0634
chr17	28164171	28164290	protein_coding	Anks1	intron	ENSMUSG00000024219	ProperStrand	72	chr4	32860585	32923309	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	1	-9.8988
chr11	48803158	48803204	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr1	59639930	59640004	protein_coding	Gm973	intron	ENSMUSG00000047361	NonProperStrand	30	1	-10.6682
chr3	21131698	21131798	LINE	L1Md_F2	L1	chr3L1Md_F221131621	NonProperStrand	1	chr3	21131488	21131578	LTR	RLTR13B2	ERVK	chr3RLTR13B221130799	NonProperStrand	1	1	-inf
chr17	39847276	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	28766416	28766451	SINE	B1_Mus1	Alu	chr7B1_Mus128766421	NonProperStrand	1	1	-inf
chr8	75110413	75112621	SINE	ID4	ID	chr8ID475112564	ProperStrand	2	chr8	75109810	75110424	protein_coding	Tmem38a	utr3	ENSMUSG00000031791	ProperStrand	39	2	-inf
chr13	112578197	112578258	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr16	16240213	16240264	protein_coding	Pkp2	intron	ENSMUSG00000041957	ProperStrand	33	1	-5.3612
chr14	50925093	50925183	LTR	ORR1D1-int	MaLR	chr14ORR1D1-int50925113	ProperStrand	1	chr14	50925032	50925132	LTR	RMER19C	ERVK	chr14RMER19C50925007	NonProperStrand	1	1	-inf
chr6	3201478	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	86518974	86518992	protein_coding	Cltc	intron	ENSMUSG00000047126	NonProperStrand	4	1	-8.3508
chr17	39847678	39847724	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	25724718	25724754	SINE	MIRb	MIR	chr7MIRb25724657	ProperStrand	2	1	-5.4040
chr17	39847221	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	124715657	124732231	protein_coding	Gnl2	intron	ENSMUSG00000028869	ProperStrand	17	2	-3.7154
chr6	128357757	128357847	protein_coding-noncoding	Nrip2	utr5	ENSMUSG00000001520	NonProperStrand	3	chr6	128357601	128357701	protein_coding	Nrip2	intron	ENSMUSG00000001520	NonProperStrand	12	2	-22.1141
chr14	19278152	19278207	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr9	123461913	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-3.1206
chr5	107829663	107829751	LINE	L1M5	L1	chr5L1M5107829598	NonProperStrand	1	chr17	39847271	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr19	5802583	5802673	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr7	116284546	116284646	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	5	-11.7462
chr6	96803224	96803314	protein_coding	Fam19a4	intron	ENSMUSG00000046500	ProperStrand	14	chr6	95636508	95636608	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-13.0943
chr9	123461891	123462000	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	10538365	10541647	protein_coding	Greb1l	exon	ENSMUSG00000042942	ProperStrand	11	1	-4.1956
chr13	44193946	44193962	SINE	ID4	ID	chr13ID444193911	ProperStrand	1	chr10	8752490	8752588	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n8752403	NonProperStrand	7	1	-inf
chr6	30144051	30144084	SINE	B1_Mus1	Alu	chr6B1_Mus130144028	ProperStrand	1	chr16	18070994	18071013	protein_coding	Dgcr6	exon	ENSMUSG00000003531	ProperStrand	10	1	-inf
chr8	83740309	83740408	LINE	L1VL2	L1	chr8L1VL283740094	ProperStrand	2	chr13	12412142	12412191	protein_coding	Actn2	intron	ENSMUSG00000052374	NonProperStrand	37	2	-inf
chr19	23946704	23946777	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	chr18	77778621	77778800	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-7.7503
chr11	77986762	77986862	protein_coding	Nek8	intron	ENSMUSG00000017405	NonProperStrand	4	chr6	5007824	5007914	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-14.7832
chr2	48920920	48921020	protein_coding-noncoding	Mbd5	utr5	ENSMUSG00000036792	NonProperStrand	3	chr2	48921583	48921673	protein_coding	Mbd5	intron	ENSMUSG00000036792	NonProperStrand	37	2	-inf
chr17	70793166	70793190	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr2	165866519	165866632	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	1	-5.2914
chr7	6745544	6745644	SINE	B3A	B2	chr7B3A6745517	ProperStrand	1	chr7	6745058	6745148	SINE	RSINE1	B4	chr7RSINE16745084	ProperStrand	1	1	-inf
chr1	170741455	170741475	SINE	B1_Mur3	Alu	chr1B1_Mur3170741350	ProperStrand	1	chr9	123461882	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	134470742	134470814	protein_coding	Lrp6	intron	ENSMUSG00000030201	ProperStrand	57	chr13	44869605	44869664	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-7.6277
chr5	76967163	76967226	protein_coding-noncoding	Exoc1	utr5	ENSMUSG00000036435	ProperStrand	23	chr18	77126257	77126331	protein_coding	Skor2	intron	ENSMUSG00000091519	ProperStrand	55	1	-14.1409
chr6	86526314	86526348	Simple_repeat	(AGCTG)n	Simple_repeat	chr6(AGCTG)n86526274	ProperStrand	1	chr2	32761924	32762045	protein_coding	Fam129b	intron	ENSMUSG00000026796	ProperStrand	30	1	-inf
chr12	116392881	116392926	LINE	L1Md_F2	L1	chr12L1Md_F2116392244	NonProperStrand	1	chr9	123462121	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	30065705	30065750	LTR	RLTR21	ERVK	chr2RLTR2130065682	NonProperStrand	2	chr2	30065053	30065088	SINE	B2_Mm1t	B2	chr2B2_Mm1t30065036	NonProperStrand	1	1	-inf
chr17	39843829	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr9	88711272	88711320	protein_coding	Gm10634	intron	ENSMUSG00000090760	NonProperStrand	3	1	-9.1352
chr17	39846647	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	52230261	52230280	LTR	RMER2	ERV1	chr8RMER252230262	ProperStrand	1	1	-inf
chr17	39846740	39846774	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	99603003	99603021	antisense	Gm17058	.	ENSMUSG00000090406	NonProperStrand	10	2	-3.6091
chr4	145841586	145841676	LTR	RMER15	ERVL	chr4RMER15145841547	NonProperStrand	1	chr4	146479818	146479918	lincRNA	Gm16889	intron	ENSMUSG00000084976	NonProperStrand	52	1	-inf
chr3	14663903	14663954	LINE	Lx2B	L1	chr3Lx2B14663499	ProperStrand	1	chr11	116852178	116852219	SINE	B2_Mm2	B2	chr11B2_Mm2116852159	ProperStrand	11	1	-inf
chr17	39846594	39846663	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	133709357	133709394	protein_coding	Eif3c	intron	ENSMUSG00000030738	NonProperStrand	2	1	-5.3533
chr5	33518567	33518681	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr10	7697945	7697968	LTR	RMER4A	ERVK	chr10RMER4A7697621	NonProperStrand	1	1	-inf
chr7	138836380	138836444	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr9	62373552	62373614	protein_coding	Coro2b	intron	ENSMUSG00000041729	NonProperStrand	105	1	-7.7286
chr4	129707327	129707415	antisense	Gm12963	.	ENSMUSG00000085517	ProperStrand	22	chr6	148945974	148946042	protein_coding	Dennd5b	intron	ENSMUSG00000030313	ProperStrand	36	1	-15.1057
chr4	93653593	93653693	LINE	Lx2	L1	chr4Lx293653446	ProperStrand	1	chr4	93653240	93653330	LTR	MTD	MaLR	chr4MTD93653075	ProperStrand	1	1	-inf
chr14	89254476	89254566	LTR	RLTR10-int	ERVK	chr14RLTR10-int89254456	NonProperStrand	1	chr14	89254343	89254443	LTR	RLTR10	ERVK	chr14RLTR1089253973	NonProperStrand	1	1	-inf
chr17	39845857	39845924	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	54160815	54160883	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n54160819	ProperStrand	1	1	-inf
chr16	43429405	43429495	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr4	119573752	119585801	protein_coding	Hivep3	intron	ENSMUSG00000028634	ProperStrand	53	1	-8.8890
chr8	67388999	67389089	DNA	URR1A	MER1_type	chr8URR1A67388950	NonProperStrand	1	chr8	67389108	67389208	LTR	MT2B2	ERVL	chr8MT2B267389122	ProperStrand	1	1	-inf
chr19	44396134	44396184	LINE	L3	CR1	chr19L344396009	ProperStrand	1	chr17	71641535	71641575	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	1	-inf
chr2	180708405	180708798	protein_coding-noncoding	Arfgap1	utr5	ENSMUSG00000027575	NonProperStrand	15	chr2	180707096	180708936	protein_coding	Arfgap1	intron	ENSMUSG00000027575	NonProperStrand	57	4	-inf
chr17	39846387	39846451	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	56065473	56065522	protein_coding	Zdhhc13	intron	ENSMUSG00000030471	ProperStrand	3	1	-4.3017
chr17	39846747	39846805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	103359412	103359501	LTR	MTA_Mm-int	MaLR	chr3MTA_Mm-int103359338	NonProperStrand	1	1	-inf
chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr18	84418202	84418292	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-3.5920
chr7	143287642	143287704	LTR	ORR1E	MaLR	chr7ORR1E143287366	ProperStrand	11	chr3	54607272	54607330	protein_coding	Rfxap	utr3	ENSMUSG00000036615	ProperStrand	2	1	-20.5081
chr17	39847823	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	78872547	78872618	LTR	IAPEz-int	ERVK	chr17IAPEz-int78871527	ProperStrand	4	2	-6.7714
chr17	39848140	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	130280512	130281043	protein_coding	Ptpra	intron	ENSMUSG00000027303	NonProperStrand	8	2	-8.6933
chr9	39270927	39270946	LINE	L1_Mur2	L1	chr9L1_Mur239270581	ProperStrand	5	chr7	141447985	141451033	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	134	1	-15.5782
chr9	49710571	49710661	SINE	B3	B2	chr9B349710572	NonProperStrand	3	chr9	49710474	49710574	SINE	MIR	MIR	chr9MIR49710475	NonProperStrand	3	3	-inf
chr17	39848598	39848704	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	26321224	26321240	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	1	-3.4476
chr13	62543578	62543687	LTR	RNERVK23-int	ERVK	chr13RNERVK23-int62543597	NonProperStrand	5	chr13	62544904	62544940	LTR	RNERVK23-int	ERVK	chr13RNERVK23-int62544176	NonProperStrand	4	1	-inf
chr5	146261272	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr7	118715498	118718052	protein_coding	Galntl4	intron	ENSMUSG00000038296	NonProperStrand	80	1	-7.3041
chr7	96282387	96282477	LINE	Lx5	L1	chr7Lx596282299	NonProperStrand	1	chr7	96282122	96282222	LINE	Lx6	L1	chr7Lx696281915	ProperStrand	1	1	-inf
chr2	179587671	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr6	88306414	88306457	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	1	-7.4922
chr17	39846461	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	40967484	40967505	LTR	RLTR18	ERVK	chr3RLTR1840967127	NonProperStrand	1	1	-inf
chr17	39848124	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	89535822	89535913	SINE	B1_Mus2	Alu	chr15B1_Mus289535760	ProperStrand	1	1	-inf
chr18	60728870	60728970	protein_coding-noncoding	Rbm22	utr5	ENSMUSG00000024604	NonProperStrand	6	chr18	60729021	60729111	protein_coding	Rbm22	exon	ENSMUSG00000024604	NonProperStrand	15	2	-inf
chr3	66483763	66483863	LINE	L1M5	L1	chr3L1M566483553	NonProperStrand	1	chr3	66483947	66484037	SINE	B3A	B2	chr3B3A66483956	NonProperStrand	1	1	-inf
chr8	34827651	34827694	LTR	MMVL30-int	ERV1	chr8MMVL30-int34825870	NonProperStrand	7	chr12	76822205	76822223	protein_coding	Sgpp1	intron	ENSMUSG00000021054	NonProperStrand	17	1	-18.7319
chr18	77051189	77051308	LTR	MTC-int	MaLR	chr18MTC-int77050760	ProperStrand	3	chr18	77051328	77051568	LTR	MTC	MaLR	chr18MTC77051295	ProperStrand	4	2	-inf
chr8	70188903	70189412	LINE	L1MC4	L1	chr8L1MC470188848	NonProperStrand	1	chr8	70189501	70189559	LINE	L1_Mus1	L1	chr8L1_Mus170189147	NonProperStrand	2	1	-inf
chr5	66126626	66126704	LTR	RLTR25B	ERVK	chr5RLTR25B66126226	ProperStrand	1	chr5	66127680	66127723	SINE	ID_B1	B4	chr5ID_B166127567	NonProperStrand	1	1	-inf
chr17	39847119	39847266	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	84222223	84222243	protein_coding	Tshz1	intron	ENSMUSG00000046982	NonProperStrand	3	2	-9.8423
chr14	70335362	70335404	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	65	chr5	96080948	96081057	protein_coding	Gm7971	intron	ENSMUSG00000079422	ProperStrand	30	1	-13.2641
chr7	30742791	30742881	SINE	B3A	B2	chr7B3A30742690	NonProperStrand	8	chr7	30738585	30738685	protein_coding	Zfp74	intron	ENSMUSG00000059975	NonProperStrand	13	8	-inf
chr2	26913050	26913293	LINE	Lx4B	L1	chr2Lx4B26913188	ProperStrand	21	chr2	26912758	26913182	SINE	B4	B4	chr2B426912949	ProperStrand	20	15	-21.1744
chr18	54422391	54422408	LINE	Lx7	L1	chr18Lx754422277	ProperStrand	1	chr17	47791394	47791517	protein_coding	Gm20517	intron	ENSMUSG00000023984	ProperStrand	54	1	-inf
chr17	39846035	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr15	57880046	57883461	protein_coding	Zhx1	intron	ENSMUSG00000022361	ProperStrand	13	1	-4.7829
chr8	110930267	110930357	DNA	MER58A	MER1_type	chr8MER58A110930209	ProperStrand	1	chr8	110929978	110930078	SINE	B3	B2	chr8B3110929864	NonProperStrand	1	1	-inf
chr4	43025500	43025578	SINE	B1_Mus2	Alu	chr4B1_Mus243025480	NonProperStrand	1	chr4	43024849	43024889	SINE	B2_Mm2	B2	chr4B2_Mm243024762	ProperStrand	1	1	-inf
chr9	54863767	54863857	protein_coding	Chrna3	exon	ENSMUSG00000032303	NonProperStrand	11	chr9	54881485	54882385	protein_coding	Chrnb4	intron	ENSMUSG00000035200	NonProperStrand	17	3	-20.1428
chr3	25270289	25270389	LINE	L1_Mus2	L1	chr3L1_Mus225270169	NonProperStrand	1	chr3	25270490	25270580	LTR	MTE2b	MaLR	chr3MTE2b25270476	ProperStrand	1	1	-inf
chr3	142547360	142547385	lincRNA	9530052C20Rik	intron	ENSMUSG00000090913	NonProperStrand	1	chr6	131292044	131292132	protein_coding	Styk1	intron	ENSMUSG00000032899	ProperStrand	5	1	-inf
chr11	105196818	105196912	protein_coding	Mrc2	intron	ENSMUSG00000020695	ProperStrand	48	chr13	51811076	51811099	protein_coding	Sema4d	intron	ENSMUSG00000021451	ProperStrand	3	1	-18.7502
chrX	90220178	90220278	LINE	L1Md_F2	L1	chrXL1Md_F290220075	NonProperStrand	1	chrX	90219839	90219929	SINE	B4A	B4	chrXB4A90219784	NonProperStrand	1	1	-inf
chr11	107439211	107439301	protein_coding-noncoding	Helz	utr5	ENSMUSG00000020721	NonProperStrand	1	chr11	107439035	107439135	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	1	-inf
chr2	14989374	14989430	protein_coding	Arl5b	intron	ENSMUSG00000017418	NonProperStrand	8	chr17	5075357	5075462	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-12.6850
chr13	21193906	21193943	LTR	MMERGLN-int	ERV1	chr13MMERGLN-int21193120	NonProperStrand	2	chr5	110337232	110337259	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110337033	ProperStrand	1	1	-inf
chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr1	54916482	54916560	protein_coding	Ankrd44	intron	ENSMUSG00000052331	ProperStrand	38	1	-10.8660
chr2	166040304	166040394	DNA	URR1A	MER1_type	chr2URR1A166040143	NonProperStrand	3	chr2	166040073	166040172	LTR	MT2A	ERVL	chr2MT2A166039622	NonProperStrand	3	3	-inf
chr17	56613414	56613621	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	chr9	110281288	110281331	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-5.5790
chr12	81581854	81581893	protein_coding	Exd2	intron	ENSMUSG00000032705	NonProperStrand	10	chr8	80793241	80793308	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-10.9371
chr6	145199140	145199240	lincRNA	Gm15706	exon	ENSMUSG00000086013	ProperStrand	1	chr6	145198584	145198674	protein_coding	Kras	utr5	ENSMUSG00000030265	NonProperStrand	3	1	-inf
chr5	146261025	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	57274783	57274853	protein_coding	Ptpn3	intron	ENSMUSG00000038764	ProperStrand	95	1	-4.1827
chr17	23815771	23815861	SINE	B1_Mus1	Alu	chr17B1_Mus123815702	NonProperStrand	9	chr17	23815861	23815961	SINE	RSINE1	B4	chr17RSINE123815883	ProperStrand	6	6	-inf
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr3	153605478	153605505	protein_coding	Acadm	intron	ENSMUSG00000062908	ProperStrand	41	1	-7.3290
chr6	25555947	25556035	LINE	Lx9	L1	chr6Lx925555755	ProperStrand	1	chr13	97190561	97190617	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr11	95751526	95751589	protein_coding	B4galnt2	intron	ENSMUSG00000013418	NonProperStrand	47	chr2	5502792	5502857	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.0193
chr2	121663805	121663895	LTR	RMER19C	ERVK	chr2RMER19C121663745	ProperStrand	1	chr14	21360329	21360429	protein_coding	Ppp3cb	intron	ENSMUSG00000021816	NonProperStrand	22	1	-inf
chr9	47682994	47683084	Low_complexity	CT-rich	Low_complexity	chr9CT-rich47682944	ProperStrand	1	chr9	56223863	56223963	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-inf
chr18	20776235	20776375	antisense	Gm16090	.	ENSMUSG00000085595	NonProperStrand	35	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.7128
chr7	47188511	47188593	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	chr9	110281305	110281331	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.5873
chr1	119909266	119909283	LTR	RLTR46	ERVK	chr1RLTR46119909217	ProperStrand	2	chr11	75901875	75902008	protein_coding	Vps53	intron	ENSMUSG00000017288	ProperStrand	22	1	-21.6660
chr11	32207023	32207568	LTR	MLT2C2	ERVL	chr11MLT2C232206781	NonProperStrand	6	chr7	99482322	99482351	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	2	-20.0621
chr6	3201474	3201509	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	102338405	102338480	protein_coding-noncoding	Map3k12	utr3	ENSMUSG00000023050	ProperStrand	14	1	-5.6737
chr13	9834303	9834368	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr17	87434047	87435126	protein_coding	Cript	utr3	ENSMUSG00000024146	NonProperStrand	16	1	-11.7917
chr13	44869592	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-4.9629
chr3	32423535	32423577	SINE	B1_Mus2	Alu	chr3B1_Mus232423434	ProperStrand	1	chr3	32432807	32432885	protein_coding	Mfn1	intron	ENSMUSG00000027668	ProperStrand	22	1	-inf
chr3	116427743	116427843	LTR	RMER10B	ERVL	chr3RMER10B116427720	ProperStrand	1	chr3	116427943	116428033	SINE	B3	B2	chr3B3116427905	ProperStrand	1	1	-inf
chr10	3991386	3991420	LINE	L1Md_F3	L1	chr10L1Md_F33990943	NonProperStrand	31	chr14	26456244	26456288	protein_coding	Zmiz1	intron	ENSMUSG00000007817	NonProperStrand	61	1	-13.3254
chr6	88028332	88028400	Low_complexity	GA-rich	Low_complexity	chr6GA-rich88028338	NonProperStrand	1	chr6	88028264	88028333	SINE	B1_Mur4	Alu	chr6B1_Mur488028170	NonProperStrand	1	1	-inf
chr18	34235950	34236040	LINE	Lx8	L1	chr18Lx834235844	ProperStrand	3	chr18	34226553	34226653	LTR	ORR1A2	MaLR	chr18ORR1A234226527	ProperStrand	3	2	-20.2273
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr2	5379142	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-7.7126
chr13	22041274	22041362	protein_coding	Zfp184	intron	ENSMUSG00000006720	NonProperStrand	16	chr8	109339844	109339912	protein_coding	Tmco7	intron	ENSMUSG00000041949	NonProperStrand	7	1	-19.4186
chr3	98315127	98316428	LINE	L1_Mur3	L1	chr3L1_Mur398315107	ProperStrand	2	chr17	39847215	39847253	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chrX	79763333	79763433	LINE	L1_Mus1	L1	chrXL1_Mus179763346	ProperStrand	1	chrX	79762955	79763045	LINE	L1_Mus2	L1	chrXL1_Mus279762281	ProperStrand	1	1	-inf
chr8	83331329	83331429	protein_coding	Gab1	intron	ENSMUSG00000031714	NonProperStrand	17	chr8	84049281	84049371	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-9.0560
chr17	4082308	4082415	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr9	19657792	19657833	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	2	-10.3616
chr11	3380811	3380875	LTR	ORR1A2	MaLR	chr11ORR1A23380633	ProperStrand	4	chr11	3373617	3373713	lincRNA	8430429K09Rik	intron	ENSMUSG00000034587	NonProperStrand	38	1	-18.8346
chr10	83459840	83459940	LTR	MLT1G	MaLR	chr10MLT1G83459836	ProperStrand	4	chr10	83459713	83459803	SINE	RSINE1	B4	chr10RSINE183459735	NonProperStrand	5	1	-inf
chr14	87017136	87017236	LINE	L1MA5	L1	chr14L1MA587016898	NonProperStrand	1	chr14	87016746	87016836	SINE	B3A	B2	chr14B3A87016771	NonProperStrand	1	1	-inf
chr10	86043014	86044519	LTR	MT2C_Mm	ERVL	chr10MT2C_Mm86044037	ProperStrand	3	chr10	86033296	86042987	LTR	MTC	MaLR	chr10MTC86042907	ProperStrand	1	1	-inf
chr17	39847011	39847068	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	128859118	128859190	SINE	B2_Mm2	B2	chr10B2_Mm2128859121	ProperStrand	1	1	-inf
chr4	91272354	91272451	LINE	L1Md_F3	L1	chr4L1Md_F391270892	NonProperStrand	7	chr9	123462108	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr2	164092391	164092528	LINE	Lx8	L1	chr2Lx8164091955	ProperStrand	1	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	7067531	7067648	protein_coding	Nudt22	utr3	ENSMUSG00000037349	NonProperStrand	31	5	-4.0433
chr8	43640281	43640381	LINE	L1MB7	L1	chr8L1MB743640297	ProperStrand	1	chr8	43640154	43640244	LTR	MTE2b	MaLR	chr8MTE2b43640137	NonProperStrand	1	1	-inf
chr2	23564293	23564393	LINE	L1Md_A	L1	chr2L1Md_A23558771	ProperStrand	4	chr3	133498218	133498308	LINE	Lx3A	L1	chr3Lx3A133497953	ProperStrand	1	1	-inf
chr11	88674335	88674435	SINE	B4A	B4	chr11B4A88674342	NonProperStrand	3	chr11	88674557	88674647	SINE	RSINE1	B4	chr11RSINE188674525	NonProperStrand	1	1	-inf
chr18	50716048	50716148	LINE	L1_Mur3	L1	chr18L1_Mur350715999	ProperStrand	2	chr18	50716201	50716291	LINE	L1_Mur3	L1	chr18L1_Mur350716172	ProperStrand	2	2	-inf
chr17	39846353	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	7930481	7930497	LTR	ORR1C2	MaLR	chrXORR1C27930103	NonProperStrand	3	1	-4.3017
chr6	125162653	125162843	LINE	L1MEd	L1	chr6L1MEd125162471	NonProperStrand	1	chr17	39847844	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	5429050	5429140	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr4	19547474	19547574	protein_coding	Wwp1	intron	ENSMUSG00000041058	ProperStrand	17	1	-7.0412
chr17	39847248	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	8222826	8222889	protein_coding	Gm10339	intron	ENSMUSG00000071591	NonProperStrand	8	1	-3.3803
chr11	109011803	109011837	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	100457432	100457517	protein_coding	Dnajc7	intron	ENSMUSG00000014195	ProperStrand	28	1	-7.6190
chr17	39843911	39843993	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr2	167065003	167065062	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-3.4303
chr4	45105555	45105619	LINE	Lx6	L1	chr4Lx645105570	ProperStrand	2	chr9	123461876	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	97135370	97135440	LINE	L1_Rod	L1	chr13L1_Rod97134707	ProperStrand	5	chr5	114613292	114613360	protein_coding	Acacb	intron	ENSMUSG00000042010	ProperStrand	7	1	-21.1751
chrX	151089519	151089636	LINE	L1Md_F2	L1	chrXL1Md_F2151085846	NonProperStrand	15	chr9	78480397	78480520	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-10.3151
chr11	14452477	14452567	LTR	ORR1A1	MaLR	chr11ORR1A114452477	ProperStrand	1	chr11	14452343	14452443	LTR	RLTR25B	ERVK	chr11RLTR25B14451913	ProperStrand	1	1	-inf
chr7	110078411	110078487	LINE	L1_Mur3	L1	chr7L1_Mur3110078351	NonProperStrand	1	chr7	110078284	110078349	SINE	B2_Mm1t	B2	chr7B2_Mm1t110078180	NonProperStrand	1	1	-inf
chr1	28002221	28002321	LINE	Lx2B	L1	chr1Lx2B28002028	ProperStrand	1	chr1	28002357	28002447	LINE	Lx2B	L1	chr1Lx2B28002314	NonProperStrand	1	1	-inf
chrX	4136308	4136352	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr5	149052902	149052964	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-11.8049
chr7	29442607	29442697	LTR	MTA_Mm	MaLR	chr7MTA_Mm29442579	NonProperStrand	3	chr7	29442405	29442505	SINE	ID_B1	B4	chr7ID_B129442396	ProperStrand	3	3	-inf
chr4	142185916	142185961	LTR	MTEb	MaLR	chr4MTEb142185925	ProperStrand	1	chr4	142186001	142186056	SINE	PB1D10	Alu	chr4PB1D10142186015	ProperStrand	1	1	-inf
chr10	111349011	111349101	LTR	LTRIS2	ERV1	chr10LTRIS2111349035	ProperStrand	1	chr10	111348723	111348823	LTR	RMER17C	ERVK	chr10RMER17C111348615	ProperStrand	1	1	-inf
chr1	180744465	180744556	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	chr4	135319150	135319200	protein_coding	Myom3	intron	ENSMUSG00000037139	NonProperStrand	91	1	-9.0628
chr17	39843785	39843838	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	20600138	20600201	protein_coding	Aftph	intron	ENSMUSG00000049659	NonProperStrand	43	1	-3.5869
chr18	48854153	48854253	LTR	ORR1A4-int	MaLR	chr18ORR1A4-int48854146	ProperStrand	1	chr18	48854377	48854467	LTR	ORR1A4	MaLR	chr18ORR1A448854341	ProperStrand	1	1	-inf
chrX	99508096	99508114	lincRNA	Gm14858	intron	ENSMUSG00000085568	ProperStrand	2	chr19	5796427	5796508	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-11.8135
chr8	84699694	84699711	LINE	Lx2	L1	chr8Lx284698625	NonProperStrand	21	chr8	47707961	47708093	protein_coding	Casp3	intron	ENSMUSG00000031628	NonProperStrand	6	1	-19.3846
chr6	112930634	112930692	SINE	B3A	B2	chr6B3A112930538	NonProperStrand	1	chr3	38879346	38879365	protein_coding	Fat4	exon	ENSMUSG00000046743	NonProperStrand	3	1	-inf
chr11	84869049	84869155	protein_coding	Usp32	intron	ENSMUSG00000000804	ProperStrand	59	chr15	32270257	32270275	protein_coding	Sema5a	intron	ENSMUSG00000022231	NonProperStrand	6	1	-16.8730
chr13	100781368	100781669	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	chr6	128838447	128838508	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	1	-15.1517
chr15	82277048	82277148	SINE	B4A	B4	chr15B4A82277049	NonProperStrand	3	chr15	82276946	82277036	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n82276737	ProperStrand	3	3	-inf
chr8	75044170	75044260	protein_coding	Med26	intron	ENSMUSG00000045248	NonProperStrand	147	chr18	53681590	53681690	protein_coding	Prdm6	intron	ENSMUSG00000069378	NonProperStrand	20	3	-inf
chr19	42364303	42364373	protein_coding	Crtac1	intron	ENSMUSG00000042401	ProperStrand	106	chr10	85910284	85910372	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	1	-10.2029
chr15	76459733	76459777	protein_coding-noncoding	Tonsl	utr3	ENSMUSG00000059323	ProperStrand	1	chr15	76459796	76459869	protein_coding	Tonsl	intron	ENSMUSG00000059323	ProperStrand	40	1	-inf
chr15	102941425	102941464	SINE	ID	ID	chr15ID102941425	ProperStrand	1	chr15	102941197	102941309	SINE	PB1D10	Alu	chr15PB1D10102941168	NonProperStrand	1	1	-inf
chr4	43492783	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr8	114526864	114526888	protein_coding	Kars	intron	ENSMUSG00000031948	NonProperStrand	70	1	-6.7868
chr6	89317150	89317240	LINE	L1MDa	L1	chr6L1MDa89317169	NonProperStrand	6	chr6	89317747	89317847	LINE	L1MDa	L1	chr6L1MDa89317724	NonProperStrand	2	2	-inf
chr3	133955218	133955236	LTR	RMER17D2	ERVK	chr3RMER17D2133954650	NonProperStrand	3	chr13	20965694	20965788	protein_coding	Aoah	intron	ENSMUSG00000021322	ProperStrand	24	1	-20.7706
chr17	25240249	25240339	protein_coding-noncoding	Telo2	utr3	ENSMUSG00000024170	NonProperStrand	6	chr17	25240516	25240616	protein_coding	Telo2	exon	ENSMUSG00000024170	NonProperStrand	6	2	-inf
chr11	6253936	6254048	protein_coding	Ogdh	intron	ENSMUSG00000020456	NonProperStrand	16	chr4	21874918	21874946	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	ProperStrand	29	2	-21.0999
chr5	146261266	146261319	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	31673657	31673733	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	1	-6.1980
chr4	155321291	155321344	protein_coding	Ube2j2	intron	ENSMUSG00000023286	NonProperStrand	17	chr9	50640140	50640221	protein_coding	Alg9	intron	ENSMUSG00000032059	NonProperStrand	20	1	-16.8066
chr2	132060216	132060274	LINE	L1M2	L1	chr2L1M2132060213	NonProperStrand	1	chr2	132064136	132064200	SINE	B1_Mus2	Alu	chr2B1_Mus2132064075	ProperStrand	1	1	-inf
chr11	116757702	116757746	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr4	151021597	151021656	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	1	-9.9973
chr11	93952860	93955543	protein_coding-noncoding	Spag9	utr5	ENSMUSG00000020859	NonProperStrand	6	chr11	93950039	93951992	protein_coding	Spag9	exon	ENSMUSG00000020859	NonProperStrand	74	4	-inf
chr10	62449343	62449361	protein_coding	Rufy2	intron	ENSMUSG00000020070	NonProperStrand	9	chr3	153669792	153669891	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	1	-12.7526
chr7	111114654	111114756	LINE	L1Md_T	L1	chr7L1Md_T111109426	ProperStrand	2	chr17	39847764	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr5	118657169	118657198	protein_coding	Rnft2	intron	ENSMUSG00000032850	NonProperStrand	136	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-7.5055
chr13	60934438	60934499	LINE	L1_Mur3	L1	chr13L1_Mur360934000	ProperStrand	7	chr18	57547113	57547170	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	1	-18.4879
chr1	153311291	153311381	SINE	B2_Mm2	B2	chr1B2_Mm2153311296	ProperStrand	1	chr1	153310689	153310789	SINE	B3	B2	chr1B3153310713	ProperStrand	1	1	-inf
chr10	23783055	23783166	LINE	L1_Mus3	L1	chr10L1_Mus323781289	NonProperStrand	5	chr16	97755135	97755151	LTR	RMER19B	ERVK	chr16RMER19B97754916	NonProperStrand	2	1	-23.2669
chr19	16629232	16629261	protein_coding	Gna14	intron	ENSMUSG00000024697	NonProperStrand	25	chr2	20725523	20725558	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-10.4139
chr1	164444363	164444431	SINE	B1_Mur1	Alu	chr1B1_Mur1164444359	ProperStrand	2	chr2	181359725	181359798	protein_coding	Prpf6	intron	ENSMUSG00000002455	ProperStrand	86	1	-18.6404
chr18	35557028	35562874	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-4.5417
chr5	146413364	146413486	LTR	RLTR45-int	ERVK	chr5RLTR45-int146413170	ProperStrand	1	chr5	146412155	146412193	SINE	RSINE1	B4	chr5RSINE1146412109	ProperStrand	1	1	-inf
chr12	108916545	108916645	SINE	B4A	B4	chr12B4A108916540	NonProperStrand	3	chr12	108916461	108916551	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n108916404	ProperStrand	1	1	-inf
chr17	56392929	56393029	LINE	L1_Mus1	L1	chr17L1_Mus156392949	ProperStrand	7	chr17	56392799	56392889	SINE	RSINE1	B4	chr17RSINE156392734	ProperStrand	7	7	-inf
chr1	171503048	171503160	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr15	83379530	83379555	protein_coding	Mcat	intron	ENSMUSG00000048755	ProperStrand	20	1	-15.3547
chr15	99464692	99464782	protein_coding-noncoding	Racgap1	utr3	ENSMUSG00000023015	ProperStrand	1	chr15	99464421	99464521	protein_coding	Racgap1	intron	ENSMUSG00000023015	ProperStrand	19	1	-inf
chr5	135453761	135453851	SINE	ID_B1	B4	chr5ID_B1135453774	ProperStrand	1	chr5	135453615	135453715	Simple_repeat	(TC)n	Simple_repeat	chr5(TC)n135453639	NonProperStrand	1	1	-inf
chr5	150145597	150145665	LTR	RMER20B	ERVK	chr5RMER20B150145500	NonProperStrand	1	chr9	123462045	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	28440981	28441042	SINE	B2_Mm2	B2	chr17B2_Mm228440905	ProperStrand	1	chr3	136443741	136443778	protein_coding	Ppp3ca	intron	ENSMUSG00000028161	ProperStrand	3	1	-inf
chr12	80227906	80228016	LTR	MERVL-int	ERVL	chr12MERVL-int80224802	ProperStrand	30	chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	1	-14.6912
chr11	31481662	31481762	LINE	L1MEc	L1	chr11L1MEc31480869	ProperStrand	1	chr11	31482075	31482165	LTR	MLT1A1	MaLR	chr11MLT1A131481795	NonProperStrand	1	1	-inf
chr7	84578104	84578194	LINE	L1_Mur2	L1	chr7L1_Mur284577374	ProperStrand	1	chr7	84578240	84578340	LINE	Lx3A	L1	chr7Lx3A84578237	ProperStrand	1	1	-inf
chr9	110281286	110281324	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr5	107905751	107905778	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-6.0179
chr7	24483178	24483271	LINE	L1Md_F3	L1	chr7L1Md_F324479109	ProperStrand	1	chr17	39848008	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	179772149	179772170	protein_coding	Psma7	exon	ENSMUSG00000027566	NonProperStrand	6	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.1685
chr17	39844010	39844049	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr1	161037380	161037424	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	8	1	-8.0150
chr1	135144809	135144899	protein_coding	Plekha6	intron	ENSMUSG00000041757	ProperStrand	14	chr9	65289879	65289979	protein_coding	Mtfmt	intron	ENSMUSG00000059183	NonProperStrand	8	1	-18.6892
chr17	94791763	94791861	LINE	L1_Mus1	L1	chr17L1_Mus194791390	ProperStrand	1	chr2	26378146	26378186	LTR	RLTR19-int	ERVK	chr2RLTR19-int26378017	ProperStrand	2	1	-inf
chr11	100334428	100334445	SINE	B1_Mur4	Alu	chr11B1_Mur4100334411	ProperStrand	1	chr6	121142696	121142824	protein_coding	Pex26	intron	ENSMUSG00000067825	ProperStrand	10	1	-inf
chr2	59633463	59633496	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	chr16	14142647	14145992	protein_coding	4921513D23Rik	intron	ENSMUSG00000060657	ProperStrand	75	2	-15.5398
chr11	119190092	119190182	protein_coding	Card14	intron	ENSMUSG00000013483	NonProperStrand	31	chr11	119159689	119159789	protein_coding	Eif4a3	intron	ENSMUSG00000025580	ProperStrand	7	1	-17.7714
chr6	4759990	4760076	lincRNA	RP23-353M17.3	exon	ENSMUSG00000093570	NonProperStrand	55	chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	1	-11.9758
chr12	110512140	110512240	LINE	L1VL4	L1	chr12L1VL4110511847	ProperStrand	1	chr3	87913442	87914132	protein_coding	Iqgap3	intron	ENSMUSG00000028068	ProperStrand	72	1	-inf
chr8	73257187	73257277	protein_coding	Pde4c	intron	ENSMUSG00000031842	NonProperStrand	22	chr13	8767268	8767368	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	1	-14.7857
chr5	129006920	129006948	LINE	Lx9	L1	chr5Lx9129006896	NonProperStrand	3	chr5	129008152	129008265	LTR	MTD	MaLR	chr5MTD129007968	NonProperStrand	3	3	-inf
chr13	23551595	23551665	protein_coding	Btn1a1	intron	ENSMUSG00000000706	ProperStrand	29	chr6	14908857	14908878	protein_coding	Foxp2	intron	ENSMUSG00000029563	NonProperStrand	15	1	-16.3117
chr4	139440504	139440678	LTR	MTC	MaLR	chr4MTC139440155	ProperStrand	2	chr8	111710997	111711073	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	NonProperStrand	118	1	-17.9846
chr10	17124521	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr15	83149716	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-8.1272
chr13	17914308	17914412	LINE	L1Md_F2	L1	chr13L1Md_F217913608	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr15	68957128	68957159	LINE	L1Md_F2	L1	chr15L1Md_F268953974	ProperStrand	5	chr8	86699207	86699337	protein_coding	Nanos3	intron	ENSMUSG00000056155	ProperStrand	2	2	-inf
chr2	177490053	177490134	LTR	RLTR41	ERV1	chr2RLTR41177489977	ProperStrand	1	chr6	3201481	3201552	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr7	58803710	58807380	protein_coding	Ano5	intron	ENSMUSG00000055489	ProperStrand	19	chr12	109686800	109686856	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	2	-16.0141
chr17	39847498	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	57915906	57916024	SINE	ID_B1	B4	chr4ID_B157915832	NonProperStrand	1	1	-inf
chr5	103704455	103704513	SINE	B1_Mur3	Alu	chr5B1_Mur3103704425	NonProperStrand	1	chr10	119202664	119202740	protein_coding	Grip1	intron	ENSMUSG00000034813	NonProperStrand	73	1	-inf
chr7	66142985	66143118	LINE	L1Md_A	L1	chr7L1Md_A66138115	ProperStrand	10	chr13	92357476	92357503	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	NonProperStrand	97	1	-14.7251
chr2	22744837	22744920	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	32962084	32963063	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	2	-6.3993
chr5	137069037	137069137	DNA	URR1B	MER1_type	chr5URR1B137068963	NonProperStrand	1	chr5	137069140	137069230	SINE	RSINE1	B4	chr5RSINE1137069163	NonProperStrand	1	1	-inf
chr1	192745640	192745665	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr11	60554512	60554629	protein_coding	Top3a	intron	ENSMUSG00000002814	NonProperStrand	55	1	-12.6479
chr1	105846720	105846736	Simple_repeat	(TTTG)n	Simple_repeat	chr1(TTTG)n105846716	NonProperStrand	2	chr9	123462125	123462151	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr12	84996528	84996555	protein_coding	Rbm25	intron	ENSMUSG00000010608	ProperStrand	19	chr12	85049190	85049732	protein_coding	Psen1	intron	ENSMUSG00000019969	ProperStrand	26	1	-16.0577
chr12	78350926	78351009	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr15	53176981	53177050	protein_coding	Ext1	utr5	ENSMUSG00000061731	ProperStrand	117	1	-4.6002
chr11	69687449	69687508	Low_complexity	AT_rich	Low_complexity	chr11AT_rich69687455	ProperStrand	1	chr11	69686961	69687038	SINE	B1_Mus1	Alu	chr11B1_Mus169686932	ProperStrand	1	1	-inf
chr7	100327209	100327259	LINE	L1_Mus3	L1	chr7L1_Mus3100326897	NonProperStrand	1	chr7	100327764	100327865	pseudogene	Gm15501	.	ENSMUSG00000087412	ProperStrand	1	1	-inf
chr17	39847341	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	5117369	5118638	protein_coding	Prkaa1	intron	ENSMUSG00000050697	ProperStrand	28	4	-3.3099
chr19	5797437	5797527	lincRNA	Malat1	exon	ENSMUSG00000092341	NonProperStrand	13	chr19	5797564	5797664	processed_transcript	Gm20417	.	ENSMUSG00000092267	ProperStrand	2	2	-inf
chr4	85205619	85355361	lincRNA	Gm12680	intron	ENSMUSG00000087349	ProperStrand	49	chr4	85205512	85285046	protein_coding	Sh3gl2	utr3	ENSMUSG00000028488	ProperStrand	117	2	-17.3685
chr17	78653303	78653351	protein_coding	Crim1	intron	ENSMUSG00000024074	NonProperStrand	26	chr12	79496188	79496267	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-8.5925
chr19	34432790	34432880	LTR	MTC-int	MaLR	chr19MTC-int34432745	ProperStrand	1	chr19	34432658	34432758	LTR	MTC	MaLR	chr19MTC34432537	ProperStrand	1	1	-inf
chr18	28425937	28426037	LINE	L1Md_F3	L1	chr18L1Md_F328425924	ProperStrand	1	chr18	28425736	28425826	LINE	L1_Mus3	L1	chr18L1_Mus328424739	NonProperStrand	1	1	-inf
chr7	126795244	126795288	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr9	64297912	64297964	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-7.5272
chr9	27355935	27356025	LTR	MTEb-int	MaLR	chr9MTEb-int27355517	NonProperStrand	3	chr9	27356036	27356136	LTR	MTEb	MaLR	chr9MTEb27356064	NonProperStrand	2	2	-inf
chr10	17704085	17704185	DNA	Charlie2b	MER1_type	chr10Charlie2b17703953	ProperStrand	1	chr10	17704429	17704519	LINE	Lx7	L1	chr10Lx717704411	NonProperStrand	1	1	-inf
chrX	87238364	87238416	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr10	78052050	78052719	protein_coding	Syde1	exon	ENSMUSG00000032714	NonProperStrand	32	1	-10.7508
chr4	32662992	32666407	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	chr10	7929169	7929239	protein_coding	Ust	intron	ENSMUSG00000047712	ProperStrand	54	3	-23.5264
chr8	6258819	6258919	LINE	L1_Mur2	L1	chr8L1_Mur26258681	NonProperStrand	1	chr8	6259240	6259330	LTR	ORR1D1-int	MaLR	chr8ORR1D1-int6259117	NonProperStrand	1	1	-inf
chr11	3127405	3127505	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	73	chr17	3080783	3080873	pseudogene	Pisd-ps2	.	ENSMUSG00000023795	NonProperStrand	2	1	-19.3551
chr8	43295781	43295851	LINE	L1_Mus1	L1	chr8L1_Mus143295759	ProperStrand	29	chr5	31153715	31153775	protein_coding	Mapre3	intron	ENSMUSG00000029166	NonProperStrand	36	1	-14.5252
chr6	146525952	146526052	protein_coding	Fgfr1op2	intron	ENSMUSG00000040242	ProperStrand	1	chr6	146525574	146525664	protein_coding	4933424B01Rik	intron	ENSMUSG00000040250	NonProperStrand	1	1	-inf
chr1	13612970	13613060	LTR	MTB	MaLR	chr1MTB13612760	ProperStrand	1	chr1	13613194	13613294	SINE	PB1D10	Alu	chr1PB1D1013613187	NonProperStrand	1	1	-inf
chr4	149120589	149120679	protein_coding	Slc25a33	intron	ENSMUSG00000028982	ProperStrand	14	chrX	68692282	68692382	protein_coding	Cd99l2	intron	ENSMUSG00000035776	ProperStrand	2	1	-19.7109
chr12	31790875	31790975	LINE	L1Md_F3	L1	chr12L1Md_F331790426	NonProperStrand	1	chr12	31760897	31790856	protein_coding	Fam110c	intron	ENSMUSG00000036136	ProperStrand	3	1	-inf
chr12	16013775	16013816	SINE	MIRb	MIR	chr12MIRb16013725	NonProperStrand	1	chr7	99969163	99969194	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-inf
chr10	127412014	127412104	LTR	ORR1C2	MaLR	chr10ORR1C2127411804	ProperStrand	2	chr10	127412115	127412215	SINE	B1_Mus2	Alu	chr10B1_Mus2127412111	NonProperStrand	2	2	-inf
chr1	74243576	74243630	SINE	B1F1	Alu	chr1B1F174243520	ProperStrand	1	chr1	74243671	74243775	SINE	B3A	B2	chr1B3A74243691	ProperStrand	1	1	-inf
chr10	80804807	80804906	protein_coding	Gipc3	intron	ENSMUSG00000034872	NonProperStrand	9	chr11	22145907	22145997	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	2	-20.4768
chr10	83011626	83019394	protein_coding	A230046K03Rik	intron	ENSMUSG00000034560	ProperStrand	68	chr13	97190561	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-8.0627
chr13	94238717	94238842	protein_coding	Jmy	intron	ENSMUSG00000021690	ProperStrand	21	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.7512
chr13	64196579	64196595	SINE	PB1D10	Alu	chr13PB1D1064196559	NonProperStrand	1	chr12	78350926	78351059	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr13	66113452	66113490	LTR	IAPLTR1_Mm	ERVK	chr13IAPLTR1_Mm66113233	ProperStrand	2	chr17	39847248	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-inf
chr9	123462079	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	137785637	137785737	protein_coding	Dera	utr3	ENSMUSG00000030225	ProperStrand	23	2	-4.9293
chr8	87527711	87527811	SINE	B1_Mur3	Alu	chr8B1_Mur387527675	ProperStrand	1	chr8	87527969	87528059	SINE	B4A	B4	chr8B4A87527962	NonProperStrand	1	1	-inf
chrX	103584890	103584956	LINE	L1Md_F2	L1	chrXL1Md_F2103584868	ProperStrand	3	chr17	39847271	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr12	28796336	28796437	DNA	RMER30	MER1_type	chr12RMER3028796298	ProperStrand	1	chr12	28797222	28797257	LINE	L1MC	L1	chr12L1MC28796994	NonProperStrand	1	1	-inf
chr7	3630707	3630728	protein_coding	Mboat7	intron	ENSMUSG00000035596	NonProperStrand	14	chr19	4348711	4348742	protein_coding	Kdm2a	exon	ENSMUSG00000054611	ProperStrand	90	1	-14.1711
chr8	43382830	43382856	LINE	Lx8	L1	chr8Lx843382627	ProperStrand	1	chr13	54190152	54190168	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-inf
chr4	139410750	139410847	SINE	MIR	MIR	chr4MIR139410752	ProperStrand	4	chr9	123462079	123462098	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr2	126732795	126732815	protein_coding	2010106G01Rik	intron	ENSMUSG00000027366	NonProperStrand	22	chr7	133102902	133102932	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-7.1716
chr6	118770200	118770243	protein_coding	Cacna1c	intron	ENSMUSG00000051331	NonProperStrand	17	chr1	170199167	170199264	protein_coding	Pbx1	intron	ENSMUSG00000052534	ProperStrand	32	1	-15.8484
chr1	89514156	89514256	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int89514121	ProperStrand	16	chr1	89514035	89514125	LTR	MTA_Mm	MaLR	chr1MTA_Mm89513726	ProperStrand	3	3	-inf
chr17	39845362	39845452	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr8	11297556	11297572	protein_coding	Col4a1	intron	ENSMUSG00000031502	NonProperStrand	4	1	-7.5930
chr5	140130691	140130726	LTR	RMER19A	ERVK	chr5RMER19A140130358	NonProperStrand	2	chr5	140123412	140123437	SINE	PB1D10	Alu	chr5PB1D10140123349	ProperStrand	3	2	-inf
chr3	132941026	132941126	SINE	B4A	B4	chr3B4A132940972	NonProperStrand	1	chr3	132941130	132941220	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n132941134	NonProperStrand	1	1	-inf
chr15	79037292	79037426	antisense	Gm10863	.	ENSMUSG00000075555	ProperStrand	40	chr2	18892567	18892584	protein_coding	Pip4k2a	intron	ENSMUSG00000026737	NonProperStrand	5	1	-18.1368
chr7	16370363	16378372	LINE	L1_Mur3	L1	chr7L1_Mur316370361	NonProperStrand	18	chr5	146260994	146261028	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-7.4564
chr7	19043504	19044963	LTR	RLTR46	ERVK	chr7RLTR4619043448	NonProperStrand	18	chr7	19042649	19042739	LTR	RMER16-int	ERVK	chr7RMER16-int19042232	ProperStrand	6	3	-inf
chr9	40803393	40804043	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	4	-3.8122
chr10	31442370	31442467	LINE	L1Md_F2	L1	chr10L1Md_F231441272	ProperStrand	4	chr17	39846807	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr5	146261026	146261054	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	80520417	80520435	protein_coding	Sgta	intron	ENSMUSG00000004937	ProperStrand	1	1	-inf
chr8	87780498	87780540	LTR	ORR1C2	MaLR	chr8ORR1C287780187	ProperStrand	1	chr7	30090406	30090496	protein_coding	Dpf1	intron	ENSMUSG00000030584	NonProperStrand	2	1	-inf
chr17	39846583	39846646	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	93440771	93440857	LTR	RodERV21-int	ERV1	chr17RodERV21-int93440181	NonProperStrand	1	1	-inf
chr12	112708924	112709024	LINE	L1MEc	L1	chr12L1MEc112708917	ProperStrand	2	chr12	112709141	112709231	SINE	B3A	B2	chr12B3A112709046	ProperStrand	2	2	-inf
chr19	23905495	23905585	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	chr9	115128202	115128220	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	1	-7.6436
chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr3	138871942	138871997	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	61	1	-5.9383
chr15	103199074	103199174	SINE	MIR3	MIR	chr15MIR3103199034	ProperStrand	3	chr15	103199170	103199260	SINE	RSINE1	B4	chr15RSINE1103199184	ProperStrand	3	3	-inf
chr13	97190552	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	79292499	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-4.9086
chr1	52646329	52646442	LINE	HAL1	L1	chr1HAL152646325	NonProperStrand	2	chr1	52648591	52648627	LTR	IAPEz-int	ERVK	chr1IAPEz-int52648276	ProperStrand	6	2	-inf
chr5	36369564	36369638	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	chr18	64503614	64504414	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	1	-10.8754
chr9	21691066	21691139	LINE	L1Md_F2	L1	chr9L1Md_F221690704	NonProperStrand	1	chr9	21691386	21691449	SINE	ID_B1	B4	chr9ID_B121691370	NonProperStrand	1	1	-inf
chrX	135918202	135918244	LINE	L1Md_T	L1	chrXL1Md_T135917493	ProperStrand	2	chr17	39847736	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr9	22116138	22116238	LTR	LTRIS4	ERV1	chr9LTRIS422115958	NonProperStrand	1	chr9	22100033	22100123	SINE	B2_Mm2	B2	chr9B2_Mm222100053	ProperStrand	1	1	-inf
chr19	46192781	46192822	LINE	L1_Rod	L1	chr19L1_Rod46192641	NonProperStrand	1	chr19	46193525	46193616	SINE	B1_Mus1	Alu	chr19B1_Mus146193491	NonProperStrand	1	1	-inf
chr2	154480149	154480241	protein_coding	Chmp4b	intron	ENSMUSG00000038467	ProperStrand	81	chr6	8356331	8356367	protein_coding	Gm16039	intron	ENSMUSG00000089862	ProperStrand	20	1	-13.6488
chr7	75771857	75771886	LINE	L1Md_F2	L1	chr7L1Md_F275769915	NonProperStrand	42	chr3	28806574	28806757	protein_coding	Gm1527	intron	ENSMUSG00000074655	ProperStrand	4	1	-18.7374
chr17	39847703	39847803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	62685624	62698278	LTR	MMETn-int	ERVK	chr5MMETn-int62684465	NonProperStrand	1	1	-inf
chr11	109011646	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	48800519	48803204	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	5	-14.6731
chr10	81530651	81530751	LINE	Lx3_Mus	L1	chr10Lx3_Mus81529841	NonProperStrand	6	chr7	28329607	28330624	protein_coding	Pld3	intron	ENSMUSG00000003363	ProperStrand	44	3	-inf
chr10	30606297	30606326	LTR	MTC	MaLR	chr10MTC30606006	ProperStrand	1	chr12	4329045	4329175	protein_coding	Ncoa1	intron	ENSMUSG00000020647	ProperStrand	80	1	-inf
chr17	50420127	50420163	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr4	43970576	43977542	protein_coding	Glipr2	intron	ENSMUSG00000028480	ProperStrand	11	1	-13.4114
chr11	79064064	79064081	protein_coding	Wsb1	intron	ENSMUSG00000017677	NonProperStrand	8	chr9	110281285	110281338	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	2	-18.3476
chr17	39847490	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	74659598	74659710	SINE	B3	B2	chr11B374659557	ProperStrand	1	1	-inf
chrX	87238364	87238381	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr2	180665760	180665787	protein_coding-noncoding	Birc7	utr5	ENSMUSG00000038840	NonProperStrand	4	1	-15.1621
chr4	146060186	146060286	SINE	B2_Mm1t	B2	chr4B2_Mm1t146060213	ProperStrand	1	chr2	24193407	24193497	protein_coding	Il1rn	intron	ENSMUSG00000026981	NonProperStrand	2	1	-inf
chr17	39846883	39846997	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	154379532	154379550	protein_coding	Rgl1	intron	ENSMUSG00000026482	ProperStrand	12	2	-3.1058
chr10	4051315	4051397	LTR	MTD	MaLR	chr10MTD4051303	ProperStrand	1	chr10	4050743	4050799	SINE	B3	B2	chr10B34050693	ProperStrand	1	1	-inf
chr5	100427120	100427220	LTR	RMER15	ERVL	chr5RMER15100426967	ProperStrand	2	chr5	100427250	100427340	LTR	RMER15	ERVL	chr5RMER15100427148	ProperStrand	13	1	-inf
chr9	114555691	114555781	LTR	MTD	MaLR	chr9MTD114555623	NonProperStrand	6	chr9	114555531	114555631	SINE	B1_Mus1	Alu	chr9B1_Mus1114555482	NonProperStrand	1	1	-inf
chr11	109011749	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	23110847	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-5.9725
chr12	68505059	68505159	LINE	L1M5	L1	chr12L1M568505027	ProperStrand	1	chr12	68505348	68505438	LINE	L1M5	L1	chr12L1M568505337	ProperStrand	1	1	-inf
chr6	65838924	65839024	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	chr12	67667892	67667982	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	2	-14.2496
chr16	91635836	91635926	protein_coding	Gart	intron	ENSMUSG00000022962	ProperStrand	101	chr18	37879970	37880070	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	5	-inf
chr11	109011675	109011869	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	22744837	22744920	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	6	-9.7867
chr2	113442186	113442203	protein_coding	Fmn1	intron	ENSMUSG00000044042	NonProperStrand	14	chr12	80720598	80720732	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-14.6197
chr5	33618758	33618827	LINE	L1Md_A	L1	chr5L1Md_A33618776	NonProperStrand	1	chr9	123461931	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	115123814	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	chr8	122987541	122987660	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-8.0452
chr17	39847205	39847239	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	112262060	112262341	LTR	MERVL-int	ERVL	chr2MERVL-int112257458	NonProperStrand	7	1	-3.6430
chr1	13608859	13608927	LTR	ETnERV2-int	ERVK	chr1ETnERV2-int13607321	NonProperStrand	1	chr9	123461964	123462042	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	77660245	77660335	LINE	L1_Mus2	L1	chrXL1_Mus277659284	NonProperStrand	3	chrX	77660333	77660433	LINE	MusHAL1	L1	chrXMusHAL177660321	NonProperStrand	2	2	-inf
chr9	106338002	106338051	protein_coding	Acy1	intron	ENSMUSG00000023262	NonProperStrand	11	chr2	60263348	60263436	protein_coding	Pla2r1	utr3	ENSMUSG00000054580	NonProperStrand	8	1	-20.0979
chr17	39847440	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	26535080	26535096	protein_coding	Hnrnpul1	intron	ENSMUSG00000040725	NonProperStrand	6	2	-5.2646
chr14	12185158	12185178	LTR	MYSERV6-int	ERVK	chr14MYSERV6-int12184537	ProperStrand	1	chr7	133015138	133015226	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	1	-inf
chr1	170871662	170871762	LINE	Lx6	L1	chr1Lx6170871648	NonProperStrand	2	chr1	170871575	170871665	LINE	Lx7	L1	chr1Lx7170871329	NonProperStrand	3	2	-inf
chr10	9900617	9900633	Low_complexity	AT_rich	Low_complexity	chr10AT_rich9900615	ProperStrand	9	chr18	47020804	47020860	protein_coding	4833403I15Rik	intron	ENSMUSG00000024481	ProperStrand	77	1	-15.4215
chr7	97567451	97567551	LTR	RLTR10-int	ERVK	chr7RLTR10-int97567307	NonProperStrand	1	chr7	97567128	97567218	LTR	RLTRETN_Mm	ERVK	chr7RLTRETN_Mm97566957	ProperStrand	1	1	-inf
chr10	40258594	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	mmu-miR-690	0	16	miRNA	mmu-miR-690	.	mmu-miR-690	ProperStrand	5	1	-10.4713
chr14	19278151	19278195	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr17	30463813	30463927	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-6.7709
chr1	72262779	72262879	SINE	B2_Mm2	B2	chr1B2_Mm272262735	ProperStrand	3	chr1	72262630	72262720	SINE	B3	B2	chr1B372262519	ProperStrand	3	3	-inf
chr16	33254066	33254155	protein_coding	Snx4	intron	ENSMUSG00000022808	ProperStrand	21	chr4	137653113	137653186	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-10.0565
chr4	133144394	133144458	protein_coding	Gpn2	intron	ENSMUSG00000028848	ProperStrand	9	chr9	15334797	15334859	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-16.0331
chr10	40432422	40432522	protein_coding	9030224M15Rik	intron	ENSMUSG00000045555	ProperStrand	68	chr4	107013289	107013379	protein_coding	Yipf1	intron	ENSMUSG00000057375	ProperStrand	174	1	-9.6352
chr17	39847806	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	6329269	6331178	protein_coding	Zfp78	intron	ENSMUSG00000055150	NonProperStrand	2	1	-5.4040
chr12	69174888	69174904	LINE	L1Md_A	L1	chr12L1Md_A69170201	ProperStrand	1	chr17	47791786	47791812	protein_coding	Gm20517	intron	ENSMUSG00000023984	ProperStrand	54	1	-inf
chr6	143195492	143195538	lincRNA	D6Ertd474e	intron	ENSMUSG00000072679	ProperStrand	65	chr18	25299556	25299631	protein_coding	5730494M16Rik	intron	ENSMUSG00000024269	NonProperStrand	28	1	-13.4055
chr3	90213000	90213033	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	chr4	117154328	117154371	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-10.7119
chr17	39847572	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	56737368	56737488	protein_coding	Kbtbd2	intron	ENSMUSG00000059486	NonProperStrand	3	1	-4.3512
chr12	73299994	73300084	LTR	RMER17A	ERVK	chr12RMER17A73299645	ProperStrand	3	chr12	73300083	73300183	SINE	B4	B4	chr12B473300102	NonProperStrand	2	2	-inf
chr17	39847767	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	130127438	130127456	LTR	RLTR14-int	ERV1	chr5RLTR14-int130126975	ProperStrand	1	1	-inf
chr2	175081413	175081501	LINE	L1Md_F	L1	chr2L1Md_F175080908	NonProperStrand	1	chr7	16368615	16370309	LINE	L1_Mur2	L1	chr7L1_Mur216368608	ProperStrand	8	1	-inf
chr11	109011652	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	80375425	80375473	protein_coding	Enthd1	intron	ENSMUSG00000050439	NonProperStrand	3	1	-12.4363
chr1	170569046	170569106	LINE	L1MA9	L1	chr1L1MA9170568857	ProperStrand	1	chr17	39846476	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	131825457	131825556	LINE	L1_Mus2	L1	chr6L1_Mus2131825404	NonProperStrand	1	chr6	131825178	131825268	LINE	Lx	L1	chr6Lx131822200	NonProperStrand	1	1	-inf
chr18	35840493	35840558	protein_coding	Dnajc18	exon	ENSMUSG00000024350	NonProperStrand	196	chr3	152224945	152225026	protein_coding	Ak5	intron	ENSMUSG00000039058	NonProperStrand	72	1	-9.2827
chr10	105238433	105238516	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	chr15	86194891	86194945	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-9.4626
chr17	39847744	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	74270857	74271686	LTR	MTA_Mm	MaLR	chrXMTA_Mm74270870	ProperStrand	4	1	-3.7035
chr15	81870366	81871171	protein_coding	Xrcc6	utr3	ENSMUSG00000022471	NonProperStrand	20	chr15	81870474	81871858	protein_coding	Nhp2l1	utr3	ENSMUSG00000063480	ProperStrand	3	3	-inf
chr1	150407387	150407406	LINE	L1MD2	L1	chr1L1MD2150407086	ProperStrand	2	chr12	105142843	105142872	protein_coding	Serpina1c	intron	ENSMUSG00000079015	NonProperStrand	2	2	-inf
chr17	39847440	39847478	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	143547361	143547377	protein_coding	Pcsk2	intron	ENSMUSG00000027419	NonProperStrand	3	1	-4.3512
chr12	80652610	80652700	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	chr17	47322491	47322591	protein_coding	Trerf1	intron	ENSMUSG00000064043	ProperStrand	109	1	-8.6452
chr11	53366366	53366406	LTR	ORR1C1	MaLR	chr11ORR1C153366370	NonProperStrand	1	chrX	103261820	103261914	protein_coding	Atp7a	intron	ENSMUSG00000033792	NonProperStrand	68	1	-inf
chr11	85401972	85402065	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	chr1	152567426	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	1	-8.7844
chr7	55895095	55895132	LINE	L1Md_T	L1	chr7L1Md_T55894174	ProperStrand	4	chr7	55899928	55899975	LINE	L1_Mus1	L1	chr7L1_Mus155899746	ProperStrand	1	1	-inf
chr17	39847141	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	123592223	123593801	antisense	Gm12905	.	ENSMUSG00000085875	ProperStrand	22	2	-3.0362
chr10	43947508	43947593	LINE	L1Md_F2	L1	chr10L1Md_F243941847	NonProperStrand	10	chr10	43936020	43936037	pseudogene	Speer5-ps1	.	ENSMUSG00000091358	ProperStrand	10	1	-19.1789
chr1	119294975	119295053	LINE	Lx3_Mus	L1	chr1Lx3_Mus119294514	ProperStrand	1	chr9	123462078	123462146	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	96583234	96583271	protein_coding	Rnf115	intron	ENSMUSG00000028098	NonProperStrand	25	chr13	55565684	55565746	protein_coding	Prr7	utr5	ENSMUSG00000034686	NonProperStrand	61	1	-13.7632
chr3	102062819	102062883	LTR	RMER15	ERVL	chr3RMER15102062818	ProperStrand	1	chr9	123461931	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847575	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	103119885	103119970	protein_coding	Copz1	intron	ENSMUSG00000060992	NonProperStrand	1	1	-inf
chr1	63200586	63207516	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr1	63200670	63207610	protein_coding	Ndufs1	intron	ENSMUSG00000025968	NonProperStrand	47	4	-inf
chr17	39846576	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	96269699	96269853	LTR	MT2A	ERVL	chr3MT2A96269392	ProperStrand	5	2	-5.8332
chr3	89408615	89408662	protein_coding	Kcnn3	intron	ENSMUSG00000000794	NonProperStrand	62	chr9	59669079	59670519	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-6.2237
chr13	112578188	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chrX	162790363	162790379	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	1	-4.8449
chr17	78258509	78258583	SINE	PB1D9	Alu	chr17PB1D978258500	NonProperStrand	1	chr17	78258378	78258434	Simple_repeat	(TTGG)n	Simple_repeat	chr17(TTGG)n78258336	ProperStrand	1	1	-inf
chr1	90939297	90939387	LINE	L1ME3	L1	chr1L1ME390939132	ProperStrand	1	chr1	90939525	90939625	LTR	ORR1D2	MaLR	chr1ORR1D290939552	ProperStrand	1	1	-inf
chr12	99645566	99645660	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr13	54190149	54190167	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-12.4587
chr17	27766574	27766651	LTR	MTA_Mm	MaLR	chr17MTA_Mm27766531	ProperStrand	6	chr17	27762777	27762844	LTR	RLTR25A	ERVK	chr17RLTR25A27762293	NonProperStrand	5	1	-inf
chr11	16251175	16251275	protein_coding	Vstm2a	intron	ENSMUSG00000048834	NonProperStrand	8	chr11	16401550	16401640	protein_coding	Sec61g	utr3	ENSMUSG00000078974	NonProperStrand	1	1	-inf
chr9	110698863	110698947	SINE	B1_Mur4	Alu	chr9B1_Mur4110698863	NonProperStrand	1	chr9	123462133	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	139844918	139844995	protein_coding	Tasp1	intron	ENSMUSG00000039033	ProperStrand	40	chr5	115597391	115598710	protein_coding	Mlec	utr3	ENSMUSG00000048578	NonProperStrand	54	1	-13.0540
chr13	23764305	23764377	LINE	Lx2B	L1	chr13Lx2B23764080	NonProperStrand	27	chr13	112944569	112944631	SINE	B1F1	Alu	chr13B1F1112944579	ProperStrand	1	1	-inf
chr14	89696045	89696145	LINE	Lx6	L1	chr14Lx689695974	NonProperStrand	1	chr14	89695883	89695973	Other	RMER1C	Other	chr14RMER1C89695861	ProperStrand	1	1	-inf
chr12	110372418	110372518	LINE	L1MA6	L1	chr12L1MA6110372139	NonProperStrand	5	chr12	110372603	110372693	SINE	B3	B2	chr12B3110372569	NonProperStrand	2	2	-inf
chr9	123461793	123462185	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr9	118674949	118675018	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	84	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr13	15663040	15663124	protein_coding	Gli3	intron	ENSMUSG00000021318	ProperStrand	30	1	-11.6799
chr7	12930798	12930847	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr17	36231461	36231500	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	1	-12.7801
chr10	129840830	129840930	LTR	ORR1A1-int	MaLR	chr10ORR1A1-int129840012	ProperStrand	1	chr8	77905053	77905143	LTR	MLT2B3	ERVL	chr8MLT2B377905049	ProperStrand	1	1	-inf
chr17	39847843	39847911	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	91597553	91597611	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n91597543	ProperStrand	1	1	-inf
chr11	12450649	12450669	LINE	L1Md_F2	L1	chr11L1Md_F212449803	NonProperStrand	24	chr11	12451678	12451798	LINE	L1Md_F2	L1	chr11L1Md_F212451538	NonProperStrand	3	1	-inf
chr17	39848099	39848189	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	115774605	115774705	protein_coding	Rad54l	intron	ENSMUSG00000028702	NonProperStrand	23	1	-3.1127
chr2	98667131	98667231	LINE	L1Md_F2	L1	chr2L1Md_F298667138	ProperStrand	27	chr8	118852998	118853088	SINE	B4A	B4	chr8B4A118852942	ProperStrand	1	1	-inf
chr16	33563058	33563148	protein_coding	Slc12a8	intron	ENSMUSG00000035506	ProperStrand	102	chr9	59671614	59671714	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-5.2493
chr1	124699489	124699579	LINE	L1_Mm	L1	chr1L1_Mm124699485	NonProperStrand	1	chr1	124699766	124699866	LINE	L1_Mus1	L1	chr1L1_Mus1124699660	ProperStrand	1	1	-inf
chr17	39847506	39847576	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	107336346	107336426	protein_coding	Cacna2d2	intron	ENSMUSG00000010066	NonProperStrand	4	1	-3.7035
chr2	44333202	44333219	LINE	Lx6	L1	chr2Lx644332995	ProperStrand	2	chr17	39846571	39846634	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr3	86116496	86116603	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	chr18	80430126	80430165	protein_coding	Hsbp1l1	intron	ENSMUSG00000078963	ProperStrand	64	1	-10.2206
chr5	146261252	146261280	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr13	93481786	93481883	protein_coding	Serinc5	utr3	ENSMUSG00000021703	NonProperStrand	22	1	-13.4052
chr4	120796084	120796184	LINE	L1Md_F2	L1	chr4L1Md_F2120794053	ProperStrand	1	chr15	38045037	38045127	SINE	PB1D7	Alu	chr15PB1D738045057	ProperStrand	1	1	-inf
chr16	32632501	32632532	protein_coding	Tfrc	utr3	ENSMUSG00000022797	ProperStrand	40	chr2	49012444	49012549	protein_coding	Mbd5	intron	ENSMUSG00000036792	ProperStrand	50	1	-13.2103
chr14	8298497	8298524	LINE	L1_Mus3	L1	chr14L1_Mus38297717	NonProperStrand	1	chr1	119078991	119079021	LTR	RLTR40	ERVK	chr1RLTR40119078814	NonProperStrand	1	1	-inf
chr4	136978137	136978227	protein_coding-noncoding	Cela3b	utr3	ENSMUSG00000023433	ProperStrand	2	chr4	136977769	136977869	protein_coding	Cela3b	intron	ENSMUSG00000023433	ProperStrand	24	2	-inf
chr6	113060293	113060326	protein_coding-noncoding	Setd5	utr5	ENSMUSG00000034269	ProperStrand	3	chr19	10619051	10619094	protein_coding	Cpsf7	intron	ENSMUSG00000034820	ProperStrand	82	1	-17.8401
chr17	39847844	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	125718267	125718326	protein_coding	Csf3r	intron	ENSMUSG00000028859	NonProperStrand	4	1	-3.7035
chr16	30892705	30892726	LTR	MLT1J1	MaLR	chr16MLT1J130892678	NonProperStrand	1	chr17	39846759	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	113105102	113109887	LTR	MT2B	ERVL	chr6MT2B113104937	ProperStrand	3	chr6	113110373	113110511	LTR	RLTR31A_Mm	ERVK	chr6RLTR31A_Mm113110223	NonProperStrand	2	1	-20.2824
chr17	66351628	66351713	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.2188
chr11	6627518	6627618	LTR	MTD-int	MaLR	chr11MTD-int6626708	NonProperStrand	1	chr11	6626593	6626683	LTR	MTD	MaLR	chr11MTD6626398	NonProperStrand	1	1	-inf
chr2	22744892	22744912	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	115756883	115757004	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	1	-4.9503
chr11	89391559	89391575	protein_coding	Ankfn1	intron	ENSMUSG00000047773	NonProperStrand	6	chr3	88590203	88590356	pseudogene	5830417I10Rik	.	ENSMUSG00000078684	ProperStrand	52	3	-inf
chr5	41832238	41832255	LINE	L2	L2	chr5L241831979	NonProperStrand	1	chr14	67689549	67689627	protein_coding	Ppp2r2a	intron	ENSMUSG00000022052	ProperStrand	54	1	-inf
chr19	60781460	60781927	LINE	L1MDa	L1	chr19L1MDa60781364	NonProperStrand	1	chr19	60781941	60782177	LINE	Lx5	L1	chr19Lx560781579	ProperStrand	2	1	-inf
chr3	138765852	138765937	LTR	MTC	MaLR	chr3MTC138765556	NonProperStrand	3	chr6	3201493	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-9.0398
chr9	123461802	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	56223570	56223964	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	24	-19.3403
chr8	116601938	116601999	LINE	Lx8	L1	chr8Lx8116601796	NonProperStrand	1	chr8	116602890	116602971	LTR	RMER19B	ERVK	chr8RMER19B116602903	NonProperStrand	4	1	-inf
chr14	124645709	124645729	protein_coding	Fgf14	intron	ENSMUSG00000025551	ProperStrand	12	chr1	136694913	136695022	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-13.5931
chr6	37429883	37429959	LINE	Lx9	L1	chr6Lx937429504	ProperStrand	1	chr17	39846526	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	109954190	109954257	LTR	MT2B	ERVL	chr8MT2B109953923	ProperStrand	1	chr8	109959334	109959390	SINE	PB1D10	Alu	chr8PB1D10109959289	NonProperStrand	1	1	-inf
chr13	47527801	47527891	LINE	Lx8	L1	chr13Lx847527794	NonProperStrand	1	chr17	4082131	4082231	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	1	-inf
chr6	128337954	128349458	antisense	Gm15862	.	ENSMUSG00000085739	ProperStrand	39	chr6	128349907	128357250	protein_coding	Nrip2	utr5	ENSMUSG00000001520	NonProperStrand	12	3	-inf
chrX	103672612	103672704	protein_coding	Fndc3c1	intron	ENSMUSG00000033737	NonProperStrand	7	chr6	8323309	8323328	protein_coding	Gm16039	intron	ENSMUSG00000089862	NonProperStrand	6	1	-inf
chr6	3201470	3201566	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	35981708	35981763	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	3	-4.0623
chrX	151547438	151547850	LINE	L1VL4	L1	chrXL1VL4151544933	ProperStrand	2	chr5	31481343	31481380	protein_coding	Gtf3c2	intron	ENSMUSG00000029144	NonProperStrand	26	1	-20.6107
mmu-miR-6238	2	19	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	chr15	55637952	55637969	protein_coding	Sntb1	intron	ENSMUSG00000060429	ProperStrand	29	1	-15.5293
chr13	73767109	73767199	protein_coding	Tert	intron	ENSMUSG00000021611	ProperStrand	54	chr7	19697095	19697570	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	2	-18.7577
chr17	39847222	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	136515250	136515295	protein_coding	Upk3b	intron	ENSMUSG00000042985	NonProperStrand	4	1	-4.8204
chr11	29542719	29542791	lincRNA	Gm12092	intron	ENSMUSG00000084850	ProperStrand	4	chr9	110281299	110281327	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-13.2304
chr13	21914908	21914954	LTR	RMER16-int	ERVK	chr13RMER16-int21914594	ProperStrand	5	chr6	108247389	108247474	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	1	-13.5963
chr17	83098561	83098651	LINE	L1_Mm	L1	chr17L1_Mm83098546	NonProperStrand	1	chr17	83098832	83098932	LINE	L1_Mm	L1	chr17L1_Mm83098818	NonProperStrand	1	1	-inf
chr8	84846774	84846833	LINE	L1Md_F2	L1	chr8L1Md_F284845460	NonProperStrand	20	chr17	39847216	39847322	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-3.2818
chr16	93901038	93901128	protein_coding	Chaf1b	intron	ENSMUSG00000022945	ProperStrand	29	chr5	109877240	109877340	protein_coding	Vmn2r17	intron	ENSMUSG00000091879	ProperStrand	4	1	-19.2431
chr17	4082184	4082274	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr12	31045648	31045748	protein_coding	Sntg2	intron	ENSMUSG00000020672	NonProperStrand	9	1	-11.5389
chr13	55700507	55700637	SINE	B2_Mm2	B2	chr13B2_Mm255700494	ProperStrand	2	chr17	39843552	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr2	73012739	73012767	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr13	44869928	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.0440
chr3	103496468	103496568	LTR	MTA_Mm	MaLR	chr3MTA_Mm103496326	NonProperStrand	1	chr3	103496251	103496341	SINE	B3	B2	chr3B3103496160	NonProperStrand	1	1	-inf
chr7	5008671	5008771	protein_coding-noncoding	Ccdc106	utr5	ENSMUSG00000035228	NonProperStrand	8	chr7	5008751	5008841	protein_coding	Ccdc106	utr5	ENSMUSG00000035228	NonProperStrand	5	1	-22.1864
chr9	89084678	89084715	LINE	L1Md_F3	L1	chr9L1Md_F389083535	ProperStrand	3	chr4	41244067	41244170	protein_coding	Dcaf12	intron	ENSMUSG00000028436	ProperStrand	14	1	-20.0603
chr3	100143403	100143719	LINE	Lx6	L1	chr3Lx6100143004	ProperStrand	5	chr9	123461968	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr14	54922786	54922841	LINE	L1_Rod	L1	chr14L1_Rod54922547	ProperStrand	2	chr16	98072736	98072822	protein_coding	Prdm15	utr5	ENSMUSG00000014039	ProperStrand	57	1	-19.3380
chr18	21207353	21207412	LTR	RLTR28	ERVL	chr18RLTR2821207336	NonProperStrand	1	chr18	21207118	21207190	LTR	RMER5	ERV1	chr18RMER521207121	NonProperStrand	2	1	-inf
chr6	67806658	67806748	LINE	L1_Mus3	L1	chr6L1_Mus367804250	ProperStrand	1	chr6	67807138	67807238	Simple_repeat	(GGAGAA)n	Simple_repeat	chr6(GGAGAA)n67806983	ProperStrand	1	1	-inf
chr4	7002706	7002796	LINE	L1Md_F	L1	chr4L1Md_F7000216	NonProperStrand	1	chr4	6583412	6583512	LTR	RMER16-int	ERVK	chr4RMER16-int6583140	ProperStrand	1	1	-inf
chr17	39847611	39847654	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	102435106	102435294	SINE	B3	B2	chr11B3102435079	ProperStrand	1	1	-inf
chr14	76123602	76123688	protein_coding	Cog3	intron	ENSMUSG00000034893	NonProperStrand	29	chr12	80867504	80867542	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-11.3100
chr4	9647994	9648049	LINE	L1Md_T	L1	chr4L1Md_T9644359	ProperStrand	17	chr4	9658792	9658857	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int9656678	NonProperStrand	7	1	-18.7474
chr2	20785499	20788443	protein_coding	Arhgap21	intron	ENSMUSG00000036591	ProperStrand	30	chr11	95310840	95310981	protein_coding	Spop	intron	ENSMUSG00000057522	ProperStrand	38	1	-14.3513
chr2	90688018	90688085	protein_coding-noncoding	Mtch2	utr5	ENSMUSG00000027282	ProperStrand	1	chr2	90688929	90689019	protein_coding	Mtch2	intron	ENSMUSG00000027282	ProperStrand	13	1	-inf
chr17	39846766	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	120324071	120324141	SINE	B4A	B4	chr14B4A120324052	ProperStrand	1	1	-inf
chr18	34938030	34938078	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	chr5	142447155	142447221	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	2	-12.8627
chr10	127403356	127403456	LINE	L1_Mur3	L1	chr10L1_Mur3127402908	NonProperStrand	2	chr10	127404251	127404341	SINE	B2_Mm2	B2	chr10B2_Mm2127404183	NonProperStrand	2	2	-inf
chr14	104494544	104494620	LTR	MTB	MaLR	chr14MTB104494383	NonProperStrand	1	chr7	133048968	133049000	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr12	81079567	81079667	SINE	ID_B1	B4	chr12ID_B181079552	NonProperStrand	2	chr12	81079436	81079526	Simple_repeat	(TTGG)n	Simple_repeat	chr12(TTGG)n81079423	ProperStrand	2	2	-inf
chr12	75667058	75667137	LINE	L1_Rod	L1	chr12L1_Rod75666607	NonProperStrand	2	chr12	75667778	75667833	LTR	RLTR10D	ERVK	chr12RLTR10D75667571	ProperStrand	2	1	-19.8939
chr3	32598700	32598790	LTR	RLTR9E	ERVK	chr3RLTR9E32598720	ProperStrand	1	chr3	32598602	32598702	SINE	ID_B1	B4	chr3ID_B132598507	NonProperStrand	1	1	-inf
chr16	23110755	23110805	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr17	83767352	83767412	protein_coding	Eml4	intron	ENSMUSG00000032624	ProperStrand	63	1	-9.8117
chr2	118834963	118835023	LTR	MT2A	ERVL	chr2MT2A118834826	ProperStrand	1	chr3	84885239	84885321	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-inf
chr10	108221386	108221486	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	169	chr14	33967473	33967564	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-8.7304
chr6	81935283	81935383	SINE	ID_B1	B4	chr6ID_B181935245	NonProperStrand	1	chr6	81935175	81935265	SINE	RSINE1	B4	chr6RSINE181935074	NonProperStrand	1	1	-inf
chr4	152013163	152013260	LTR	MLT1K	MaLR	chr4MLT1K152013186	NonProperStrand	3	chr4	152012923	152012986	LTR	MTD	MaLR	chr4MTD152012912	ProperStrand	1	1	-inf
chr19	37943491	37945632	LINE	L1Md_F2	L1	chr19L1Md_F237942782	NonProperStrand	3	chr9	123461800	123461849	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr1	81660883	81660983	LINE	L1M5	L1	chr1L1M581660877	ProperStrand	1	chr1	81660678	81660768	LINE	Lx2	L1	chr1Lx281659364	ProperStrand	1	1	-inf
chr3	6992059	6992149	LTR	LTRIS2	ERV1	chr3LTRIS26991595	ProperStrand	1	chr3	6992205	6992305	LTR	MTE-int	MaLR	chr3MTE-int6992130	ProperStrand	1	1	-inf
chr14	65856776	65856845	protein_coding	Fzd3	intron	ENSMUSG00000007989	NonProperStrand	34	chr7	133022596	133022655	protein_coding	Gsg1l	utr3	ENSMUSG00000046182	ProperStrand	1884	1	-6.2990
chr11	96960787	96960847	protein_coding	Tbx21	intron	ENSMUSG00000001444	ProperStrand	15	chr9	123461931	123462017	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr7	5110739	5110761	LINE	L1Md_T	L1	chr7L1Md_T5104752	NonProperStrand	3	chr17	39846520	39846552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr18	31896914	31902328	LTR	RLTR47_MM	ERV1	chr18RLTR47_MM31896806	NonProperStrand	1	chr18	31904266	31904294	Simple_repeat	(GAAA)n	Simple_repeat	chr18(GAAA)n31904219	ProperStrand	1	1	-inf
chr7	93055355	93055455	LINE	L1_Mur2	L1	chr7L1_Mur293054792	NonProperStrand	1	chr7	93055856	93055946	LINE	L1_Mur2	L1	chr7L1_Mur293055849	NonProperStrand	1	1	-inf
chr4	144029609	144029709	LINE	Lx2B	L1	chr4Lx2B144028864	NonProperStrand	1	chr4	144088702	144088792	pseudogene	Gm13118	.	ENSMUSG00000082835	NonProperStrand	1	1	-inf
chr10	105238382	105238420	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	chr14	79426669	79426686	protein_coding	1300010F03Rik	intron	ENSMUSG00000058997	ProperStrand	49	1	-13.1047
chr1	83728984	83729074	LINE	L1_Mus2	L1	chr1L1_Mus283728913	ProperStrand	1	chr8	79676726	79676826	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	1	-inf
chr9	99100624	99100691	SINE	B3	B2	chr9B399100587	ProperStrand	1	chr11	109452795	109452854	protein_coding	Wipi1	intron	ENSMUSG00000041895	ProperStrand	23	1	-inf
chr18	4980328	4980418	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr4	21836451	21836484	protein_coding	Coq3	intron	ENSMUSG00000028247	ProperStrand	16	1	-11.7609
chr17	39847277	39847351	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	35524472	35524509	LTR	ORR1A2-int	MaLR	chr17ORR1A2-int35523376	ProperStrand	6	1	-3.9545
chr1	171416191	171416837	Simple_repeat	(TATG)n	Simple_repeat	chr1(TATG)n171416081	ProperStrand	1	chr13	97190559	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr11	88583255	88583280	lincRNA	C030037D09Rik	exon	ENSMUSG00000087574	NonProperStrand	108	chr1	136364979	136365014	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-9.2007
chr2	153402581	153402632	SINE	B1_Mm	Alu	chr2B1_Mm153402549	ProperStrand	1	chr17	35835028	35835122	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	1	-inf
chr6	42276525	42276601	SINE	B1_Mur2	Alu	chr6B1_Mur242276485	ProperStrand	1	chr4	132420523	132420579	protein_coding	Stx12	intron	ENSMUSG00000028879	ProperStrand	11	1	-inf
chr7	59988729	59988819	LTR	RMER17B	ERVK	chr7RMER17B59988727	ProperStrand	1	chr7	59988404	59988504	SINE	B2_Mm2	B2	chr7B2_Mm259988313	NonProperStrand	1	1	-inf
chr17	35384423	35384523	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	chr7	103550722	103550812	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-13.5674
chr3	122166681	122166697	protein_coding	Bcar3	intron	ENSMUSG00000028121	NonProperStrand	10	chr18	64506611	64506745	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	1	-16.9089
chr17	39847008	39847047	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	79852825	79852859	LTR	RMER17C	ERVK	chr17RMER17C79852783	NonProperStrand	1	1	-inf
chrX	139926036	139926105	DNA	MER63B	AcHobo	chrXMER63B139925876	ProperStrand	2	chrX	139921003	139921061	LINE	L1M4	L1	chrXL1M4139920648	NonProperStrand	1	1	-inf
chr11	55207337	55207401	SINE	B1_Mur2	Alu	chr11B1_Mur255207320	NonProperStrand	1	chr4	53521262	53521336	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	1	-inf
chr17	85402445	85431523	protein_coding	Slc3a1	intron	ENSMUSG00000024131	ProperStrand	2	chr17	85393478	85394657	protein_coding	Ppm1b	intron	ENSMUSG00000061130	ProperStrand	9	2	-inf
chr12	86445546	86445629	protein_coding	Prox2	intron	ENSMUSG00000042320	ProperStrand	63	chr13	9304969	9305020	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-9.4513
chr13	9834304	9834367	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr7	30318685	30318728	protein_coding	4932431P20Rik	exon	ENSMUSG00000074224	ProperStrand	16	1	-11.7917
chr6	87898040	87902281	LTR	RLTR10-int	ERVK	chr6RLTR10-int87900316	ProperStrand	1	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	10799152	10799242	LTR	MTE2b	MaLR	chr16MTE2b10799039	ProperStrand	1	chr16	10799469	10799569	LTR	ORR1E	MaLR	chr16ORR1E10799407	NonProperStrand	1	1	-inf
chrX	151904503	151904584	LINE	Lx9	L1	chrXLx9151904447	NonProperStrand	1	chr13	44869596	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr5	77261876	77261959	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	chr17	66119070	66119087	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-9.4369
chr17	39846967	39847012	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	127039507	127039573	SINE	B1_Mus1	Alu	chr4B1_Mus1127039445	NonProperStrand	2	1	-5.3533
chr3	135215174	135216338	protein_coding	Manba	intron	ENSMUSG00000028164	ProperStrand	20	chr5	63268249	63268267	protein_coding	Gm17384	intron	ENSMUSG00000090326	NonProperStrand	3	1	-22.8010
chr2	22744883	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	60303047	60303130	protein_coding	Nbeal1	intron	ENSMUSG00000073664	ProperStrand	53	1	-7.0550
chrX	61421285	61421362	LINE	L1Md_A	L1	chrXL1Md_A61421198	NonProperStrand	1	chr5	103904901	103904971	protein_coding	Ptpn13	intron	ENSMUSG00000034573	NonProperStrand	46	1	-inf
chr11	6116882	6116936	protein_coding	Npc1l1	intron	ENSMUSG00000020447	ProperStrand	50	chr9	70455377	70455441	protein_coding	Fam63b	exon	ENSMUSG00000042444	ProperStrand	34	1	-13.5393
chr7	47188564	47188654	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	chr11	62149188	62149288	protein_coding	Ncor1	intron	ENSMUSG00000018501	NonProperStrand	20	1	-15.3003
chr17	39845952	39846020	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr16	17502298	17502348	protein_coding	Aifm3	intron	ENSMUSG00000022763	ProperStrand	5	1	-6.7797
chr15	83455233	83455307	protein_coding	Scube1	intron	ENSMUSG00000016763	ProperStrand	120	chr5	114387142	114387158	protein_coding	Ssh1	utr3	ENSMUSG00000042121	ProperStrand	15	1	-13.4538
chr6	87930423	87930454	protein_coding	H1fx	utr3	ENSMUSG00000044927	NonProperStrand	3	chr6	87931531	87931601	protein_coding	Gm5577	intron	ENSMUSG00000084950	ProperStrand	24	1	-20.7706
chrX	99825128	99825147	protein_coding	Phka1	intron	ENSMUSG00000034055	ProperStrand	9	chr13	44869597	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.2984
chr19	5801663	5801705	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr5	31806066	31806114	protein_coding	Gpn1	intron	ENSMUSG00000064037	ProperStrand	6	1	-9.1125
chr11	68822592	68822644	protein_coding	Pfas	intron	ENSMUSG00000020899	ProperStrand	51	chr4	53860712	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-9.7539
chr2	22744887	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	119422968	119422984	protein_coding	Hivep3	intron	ENSMUSG00000028634	ProperStrand	53	1	-7.0550
chr14	18224840	18224882	LINE	L1Md_F2	L1	chr14L1Md_F218223686	ProperStrand	1	chr7	107385917	107385986	protein_coding	Pgm2l1	intron	ENSMUSG00000030729	ProperStrand	12	1	-inf
chr17	39847174	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	17911094	17911159	Satellite	MMSAT4	Satellite	chr12MMSAT417910974	ProperStrand	1	1	-inf
chr7	34164434	34165470	LTR	RMER16-int	ERVK	chr7RMER16-int34164837	NonProperStrand	3	chr7	34163158	34164424	LTR	RMER4B	ERVK	chr7RMER4B34162939	NonProperStrand	3	3	-inf
chr13	59506046	59506136	LINE	Lx	L1	chr13Lx59505967	ProperStrand	3	chr13	59505840	59505940	LTR	MTA_Mm	MaLR	chr13MTA_Mm59505699	NonProperStrand	2	2	-inf
chr4	43492778	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr17	70963669	70963826	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	3	-4.8280
chr6	71962199	71962281	LINE	Lx8	L1	chr6Lx871962143	ProperStrand	1	chr2	131919213	131919260	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-inf
chr14	30853895	30853985	protein_coding	Cacna1d	utr3	ENSMUSG00000015968	NonProperStrand	187	chr14	30843021	30843121	protein_coding	Chdh	intron	ENSMUSG00000015970	ProperStrand	75	1	-9.2948
chr16	94713121	94713211	LTR	MT2A	ERVL	chr16MT2A94712779	ProperStrand	1	chr16	94713312	94713412	SINE	B2_Mm1a	B2	chr16B2_Mm1a94713324	NonProperStrand	1	1	-inf
chr5	132492779	132492869	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr16	8635898	8635998	protein_coding	Tmem186	exon	ENSMUSG00000043140	ProperStrand	7	1	-11.6190
chr5	146261237	146261284	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr15	76371974	76372069	protein_coding	Slc52a2	utr3	ENSMUSG00000022560	ProperStrand	7	1	-15.8008
chr17	56356609	56356665	protein_coding	Dpp9	intron	ENSMUSG00000001229	NonProperStrand	214	chr9	64295999	64296063	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-8.2243
chr11	22786366	22786462	protein_coding	Commd1	intron	ENSMUSG00000051355	NonProperStrand	7	chr1	175613266	175613305	protein_coding	Pydc3	exon	ENSMUSG00000066677	NonProperStrand	23	1	-18.4679
chr10	37963623	37963723	LINE	L1_Mur2	L1	chr10L1_Mur237963636	ProperStrand	1	chr10	37963474	37963564	LTR	RMER17B	ERVK	chr10RMER17B37963154	NonProperStrand	1	1	-inf
chr17	39846462	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	33658352	33658430	LTR	RMER17D2	ERVK	chr17RMER17D233657646	NonProperStrand	2	1	-5.3533
chr11	109011646	109011669	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	7173711	7173842	LTR	RMER5	ERV1	chr17RMER57173690	ProperStrand	2	1	-13.5345
chr4	108633191	108633255	antisense	8030443G20Rik	.	ENSMUSG00000086483	ProperStrand	14	chr5	76693761	76693815	protein_coding	Clock	intron	ENSMUSG00000029238	NonProperStrand	16	1	-17.6629
chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	chr8	122946216	122946314	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-6.1481
chr14	74902428	74902539	LINE	L1_Rod	L1	chr14L1_Rod74901846	ProperStrand	1	chr9	123462089	123462132	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	86464680	86464731	LINE	Lx9	L1	chr15Lx986464617	NonProperStrand	5	chr9	123461930	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr4	137521744	137521771	LTR	BGLII_B	ERVK	chr4BGLII_B137521548	ProperStrand	10	chr17	35822172	35822293	protein_coding	Ddr1	intron	ENSMUSG00000003534	NonProperStrand	24	1	-17.5578
chr12	59013533	59013594	LINE	L1Md_A	L1	chr12L1Md_A59011732	NonProperStrand	1	chr17	39847324	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr13	57508782	57508800	LINE	L1MA4A	L1	chr13L1MA4A57508375	NonProperStrand	2	chr17	39847440	39847502	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr8	73273014	73273054	protein_coding-noncoding	Pde4c	utr5	ENSMUSG00000031842	NonProperStrand	3	chr1	165209897	165209989	protein_coding	Prrx1	intron	ENSMUSG00000026586	ProperStrand	33	1	-19.5231
chr17	87978704	87978734	LTR	RMER16-int	ERVK	chr17RMER16-int87978382	NonProperStrand	3	chr17	87979765	87979877	LTR	RMER16-int	ERVK	chr17RMER16-int87979504	NonProperStrand	8	1	-20.8155
chr16	24919444	24919553	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr16	16023123	16023175	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	1	-7.9483
chr10	79967802	79967823	protein_coding	Onecut3	intron	ENSMUSG00000045518	ProperStrand	19	chr17	27562677	27562698	protein_coding	Grm4	intron	ENSMUSG00000063239	NonProperStrand	125	1	-12.8830
chr17	39846847	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	77153937	77154023	SINE	B1_Mus1	Alu	chr18B1_Mus177153877	NonProperStrand	1	1	-inf
chr15	5234833	5234849	LINE	L1Md_A	L1	chr15L1Md_A5234368	NonProperStrand	3	chrX	48269571	48269630	protein_coding	Frmd7	intron	ENSMUSG00000036131	NonProperStrand	47	1	-18.8988
chr10	127517476	127517517	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	148	chr11	88573801	88573832	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-4.5086
chr17	39847128	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	27008380	27008449	LTR	ORR1B1	MaLR	chr9ORR1B127008345	ProperStrand	1	1	-inf
chr15	47342097	47342187	LINE	L1_Mus2	L1	chr15L1_Mus247340671	NonProperStrand	1	chr15	47342498	47342598	LTR	LTRIS2	ERV1	chr15LTRIS247342458	ProperStrand	1	1	-inf
chr17	39847230	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	125406042	125406061	SINE	B4	B4	chr5B4125405830	ProperStrand	4	1	-4.8204
chr8	127172581	127172615	protein_coding	2310022B05Rik	intron	ENSMUSG00000031983	NonProperStrand	55	chr8	127215844	127215944	protein_coding	Ttc13	intron	ENSMUSG00000037300	NonProperStrand	38	1	-13.1213
chr18	46709260	46709360	LTR	MTB	MaLR	chr18MTB46709107	ProperStrand	1	chr18	46709484	46709574	SINE	B1_Mur2	Alu	chr18B1_Mur246709497	NonProperStrand	1	1	-inf
mmu-miR-3968	3	21	miRNA	mmu-miR-3968	.	mmu-miR-3968	ProperStrand	12	chr4	137644394	137644447	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-11.2114
chr14	105384905	105385005	LINE	L1VL4	L1	chr14L1VL4105384925	NonProperStrand	1	chr14	105385109	105385199	LINE	L1VL4	L1	chr14L1VL4105385109	NonProperStrand	1	1	-inf
chr2	127527376	127527405	LINE	L1M4b	L1	chr2L1M4b127527368	ProperStrand	1	chr17	39846808	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	36176251	36176285	protein_coding	Rnf19a	intron	ENSMUSG00000022280	NonProperStrand	6	chr4	136547349	136547443	protein_coding	Zbtb40	intron	ENSMUSG00000060862	NonProperStrand	45	1	-17.4177
chr17	39846462	39846503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	85273594	85274849	LTR	IAP-d-int	ERVK	chr8IAP-d-int85273128	ProperStrand	2	1	-5.3533
chr17	62738117	62738183	LINE	L1Md_T	L1	chr17L1Md_T62735620	ProperStrand	1	chr9	123461882	123461906	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	13828166	13828256	LINE	Lx5	L1	chr5Lx513828150	NonProperStrand	1	chr5	13828349	13828448	LTR	RMER10B	ERVL	chr5RMER10B13828330	NonProperStrand	1	1	-inf
chr2	115740567	115740671	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	chr3	88552830	88552877	protein_coding	Syt11	intron	ENSMUSG00000068923	ProperStrand	24	1	-11.9727
chr5	105748733	105748812	LINE	L1Md_F2	L1	chr5L1Md_F2105743833	NonProperStrand	34	chr5	105739756	105739817	LTR	RMER17D	ERVK	chr5RMER17D105738986	ProperStrand	3	1	-19.2628
chr17	39847220	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	70791771	70791853	SINE	B3A	B2	chr6B3A70791735	NonProperStrand	1	1	-inf
chr17	39846956	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	37638729	37638749	protein_coding-noncoding	Dlc1	utr3	ENSMUSG00000031523	NonProperStrand	1	1	-inf
chr11	77983130	77983220	protein_coding-noncoding	Nek8	utr3	ENSMUSG00000017405	NonProperStrand	4	chr11	77983284	77984022	protein_coding	Nek8	intron	ENSMUSG00000017405	NonProperStrand	4	1	-inf
chr13	13979560	13980944	LINE	L1Md_T	L1	chr13L1Md_T13975188	NonProperStrand	2	chr17	39846370	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr17	39847440	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	30246320	30246338	protein_coding	Mboat1	intron	ENSMUSG00000038732	NonProperStrand	5	1	-3.2379
chr3	95254877	95254984	protein_coding	Arnt	intron	ENSMUSG00000015522	NonProperStrand	29	chr15	99230682	99230716	protein_coding	Tmbim6	intron	ENSMUSG00000023010	ProperStrand	9	1	-17.3583
chr2	102829380	102829449	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr2	63850173	63850260	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-9.3745
chrX	21161338	21161438	LINE	L1MA5	L1	chrXL1MA521161285	ProperStrand	1	chrX	21161507	21161597	LINE	L1MA5A	L1	chrXL1MA5A21161487	NonProperStrand	1	1	-inf
chr17	39843602	39843728	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	102658768	102658785	protein_coding	Cd44	intron	ENSMUSG00000005087	NonProperStrand	5	1	-7.4674
chr7	116140386	116140417	LINE	Lx8	L1	chr7Lx8116140115	ProperStrand	1	chr17	39846353	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	120347847	120347994	lincRNA	Gm16755	exon	ENSMUSG00000086218	ProperStrand	60	chr5	24565761	24565852	protein_coding	Prkag2	intron	ENSMUSG00000028944	ProperStrand	69	1	-11.7415
chr1	153906447	153907026	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	NonProperStrand	52	chr8	18773063	18773155	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-7.1944
chr17	39846415	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	79292499	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	12	-7.4575
chr17	39846759	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	31481561	31481608	SINE	ID4_	ID	chr2ID4_31481535	NonProperStrand	1	1	-inf
chr7	64872431	64872480	protein_coding	Gabrb3	intron	ENSMUSG00000033676	NonProperStrand	14	chr2	5379284	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.4379
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	32067775	32067884	protein_coding	Wdr33	utr3	ENSMUSG00000024400	ProperStrand	3	1	-4.3512
chr17	39847903	39847993	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	35556507	35556524	LTR	RMER17A	ERVK	chr17RMER17A35555875	NonProperStrand	1	1	-inf
chr1	87910112	87910202	LINE	Lx8	L1	chr1Lx887910011	NonProperStrand	1	chr1	87909829	87909929	LTR	RLTR44-int	ERVK	chr1RLTR44-int87909325	ProperStrand	1	1	-inf
chr18	23889837	23889881	LINE	Lx5	L1	chr18Lx523889563	ProperStrand	1	chr2	161039769	161039823	lincRNA	Gm14243	intron	ENSMUSG00000067745	NonProperStrand	16	1	-inf
chr17	39847844	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	112354024	112354047	Simple_repeat	(TGGA)n	Simple_repeat	chr5(TGGA)n112353971	ProperStrand	1	1	-inf
chr11	16501745	16501788	LTR	ORR1A2-int	MaLR	chr11ORR1A2-int16501173	ProperStrand	2	chr7	107242001	107242071	protein_coding-noncoding	Pold3	utr3	ENSMUSG00000030726	NonProperStrand	3	1	-20.8297
chr15	103213154	103213211	SINE	PB1D9	Alu	chr15PB1D9103213120	ProperStrand	3	chr1	74739457	74739483	protein_coding	Ttll4	intron	ENSMUSG00000033257	ProperStrand	5	1	-inf
chr5	136432955	136432985	SINE	B1_Mus2	Alu	chr5B1_Mus2136432891	NonProperStrand	1	chr5	32660671	32660711	protein_coding	Plb1	intron	ENSMUSG00000029134	ProperStrand	46	1	-inf
chr4	43567152	43568496	protein_coding-noncoding	Tln1	utr3	ENSMUSG00000028465	ProperStrand	15	chr4	43567048	43568289	protein_coding	Tln1	intron	ENSMUSG00000028465	ProperStrand	46	15	-inf
chr19	5891255	5891296	protein_coding	Tigd3	utr3	ENSMUSG00000044390	ProperStrand	22	chr8	70870830	70870933	protein_coding	Sh2d4a	utr3	ENSMUSG00000053886	NonProperStrand	62	1	-13.9944
chr17	39848001	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	51123224	51123328	SINE	B2_Mm2	B2	chr13B2_Mm251123248	NonProperStrand	1	1	-inf
chr15	84839746	84839827	LINE	Lx7	L1	chr15Lx784839640	ProperStrand	1	chr13	112578220	112578295	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr11	109011790	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	144883523	144883539	Simple_repeat	(CAAA)n	Simple_repeat	chrX(CAAA)n144883512	ProperStrand	4	1	-11.7441
chr2	22744837	22744912	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	23641209	23641281	SINE	ID_B1	B4	chr11ID_B123641089	NonProperStrand	1	1	-inf
chr3	65670758	65670848	LINE	L2c	L2	chr3L2c65670692	NonProperStrand	1	chr17	39846460	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	48544681	48544771	protein_coding-noncoding	Repin1	utr5	ENSMUSG00000052751	ProperStrand	1	chr6	48544864	48544964	protein_coding	Repin1	utr5	ENSMUSG00000052751	ProperStrand	1	1	-inf
chr2	36172661	36172751	LINE	L1Md_F2	L1	chr2L1Md_F236172450	NonProperStrand	1	chr2	36172789	36172889	LINE	MusHAL1	L1	chr2MusHAL136172759	NonProperStrand	1	1	-inf
chr17	39846427	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	17303952	17304015	LTR	RLTR13B1	ERVK	chr17RLTR13B117303233	ProperStrand	3	1	-4.3017
chr1	84732402	84732430	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr2	5379270	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.1952
chr17	39847882	39847943	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	4745925	4746022	protein_coding	Rpl28	intron	ENSMUSG00000030432	ProperStrand	5	1	-3.2379
chr3	75939306	75939428	protein_coding	Fstl5	intron	ENSMUSG00000034098	NonProperStrand	33	chr8	125544964	125544988	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-9.2442
chr1	156424955	156425036	protein_coding	Cacna1e	intron	ENSMUSG00000004110	ProperStrand	66	chr11	43683544	43683596	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	1	-11.7324
chr15	83413384	83413467	protein_coding	Ttll12	intron	ENSMUSG00000016757	ProperStrand	38	chr7	105747488	105747674	protein_coding	2210018M11Rik	intron	ENSMUSG00000035401	ProperStrand	27	1	-14.5615
chr4	32321767	32321801	LINE	L2	L2	chr4L232321677	ProperStrand	2	chr7	26535080	26535096	protein_coding	Hnrnpul1	intron	ENSMUSG00000040725	NonProperStrand	6	1	-inf
chr5	131829779	131829904	LINE	Lx5	L1	chr5Lx5131828725	NonProperStrand	1	chr5	131832942	131832970	LINE	Lx5	L1	chr5Lx5131830100	NonProperStrand	2	1	-inf
chr2	32837010	32837110	protein_coding-noncoding	Slc2a8	utr3	ENSMUSG00000026791	NonProperStrand	1	chr2	32836856	32836946	protein_coding	Slc2a8	intron	ENSMUSG00000026791	NonProperStrand	1	1	-inf
chr17	39842998	39843041	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr2	146299473	146299492	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	NonProperStrand	19	1	-7.6780
chr8	98771073	98771173	LINE	L1MA9	L1	chr8L1MA998771018	ProperStrand	1	chr8	98929658	98929748	SINE	B1_Mus1	Alu	chr8B1_Mus198929632	ProperStrand	1	1	-inf
chr4	125588699	125588806	lincRNA	2610028E06Rik	intron	ENSMUSG00000085562	NonProperStrand	78	chrX	164938617	164938634	protein_coding	Frmpd4	intron	ENSMUSG00000049176	NonProperStrand	76	1	-11.0193
chr9	123461931	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	40955355	40955413	protein_coding	Nfx1	intron	ENSMUSG00000028423	ProperStrand	19	1	-3.1531
chr2	91837930	91837994	protein_coding	Creb3l1	intron	ENSMUSG00000027230	NonProperStrand	21	chr7	109520467	109520521	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-11.9682
chr17	39843407	39843486	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr13	8767062	8767142	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	1	-3.1977
chr2	167065300	167065358	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr7	28352196	28352269	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-10.7186
chr17	39846951	39846990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	41026863	41026944	SINE	B1_Mus1	Alu	chr4B1_Mus141026798	NonProperStrand	1	1	-inf
chr4	139967263	139967342	LINE	L1Md_F2	L1	chr4L1Md_F2139967085	NonProperStrand	1	chr4	139959554	139959618	LINE	Lx8	L1	chr4Lx8139959474	ProperStrand	1	1	-inf
chr11	29751722	29751778	protein_coding	Eml6	intron	ENSMUSG00000044072	NonProperStrand	99	chr13	23573940	23574028	protein_coding	Btn2a2	intron	ENSMUSG00000053216	ProperStrand	18	1	-13.4627
chr11	98861628	98861667	protein_coding	Top2a	intron	ENSMUSG00000020914	ProperStrand	2	chr9	123462112	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr9	12800309	12800399	LTR	LTR40a	ERVL	chr9LTR40a12800260	ProperStrand	1	chr9	12800542	12800642	SINE	B4A	B4	chr9B4A12800480	ProperStrand	1	1	-inf
chr10	61868090	61868180	protein_coding	Hkdc1	intron	ENSMUSG00000020080	NonProperStrand	41	chr18	34600199	34602684	protein_coding	Fam13b	utr3	ENSMUSG00000036501	ProperStrand	59	1	-12.8262
chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	chr3	9453782	9453870	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-7.7485
chr17	39847279	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	3142417	3142541	protein_coding	Fam171a1	exon	ENSMUSG00000050530	ProperStrand	4	1	-4.8204
chr11	87218343	87218430	protein_coding	Rad51c	utr5	ENSMUSG00000007646	NonProperStrand	15	chr9	123462056	123462076	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr15	57975973	57975997	protein_coding	Wdyhv1	intron	ENSMUSG00000022359	NonProperStrand	10	chr1	63587522	63587625	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-11.7184
chr14	75361311	75361365	LINE	Lx	L1	chr14Lx75360965	NonProperStrand	1	chr14	75341977	75342077	protein_coding	Lrch1	intron	ENSMUSG00000068015	NonProperStrand	34	1	-inf
chr10	39923930	39924020	LTR	MTA_Mm	MaLR	chr10MTA_Mm39923688	ProperStrand	1	chr10	39725283	39725383	protein_coding	AI317395	intron	ENSMUSG00000038522	NonProperStrand	20	1	-inf
chr1	192745569	192745660	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr8	70467482	70468953	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-7.8556
chr5	30060682	30060772	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr4	75434424	75434523	Simple_repeat	(GA)n	Simple_repeat	chr4(GA)n75434426	ProperStrand	1	1	-inf
chr1	72176496	72176539	LTR	IAPEz-int	ERVK	chr1IAPEz-int72172467	ProperStrand	26	chr6	3201475	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-4.4507
chr3	90307861	90307961	protein_coding	2500003M10Rik	intron	ENSMUSG00000001017	NonProperStrand	12	chr13	49587659	49587749	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	1	-15.8061
chr2	157398111	157398206	LINE	Lx6	L1	chr2Lx6157398015	ProperStrand	1	chr17	39847513	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	5796789	5796817	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr13	21072865	21072883	protein_coding	Aoah	intron	ENSMUSG00000021322	ProperStrand	24	1	-6.2327
chr16	16187882	16187908	LINE	L1_Mur3	L1	chr16L1_Mur316187860	ProperStrand	1	chr16	57291140	57291238	protein_coding	Tmem30c	utr5	ENSMUSG00000022753	NonProperStrand	21	1	-inf
chr12	16538384	16538475	SINE	ID_B1	B4	chr12ID_B116538388	NonProperStrand	2	chr12	16544693	16544745	protein_coding	Lpin1	utr3	ENSMUSG00000020593	ProperStrand	65	2	-inf
chr9	123461931	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	80614099	80614115	protein_coding	Ttc39d	intron	ENSMUSG00000046196	ProperStrand	3	1	-7.0114
chr15	88252552	88252642	LINE	L1VL4	L1	chr15L1VL488252137	NonProperStrand	1	chr15	88253064	88253164	LTR	ORR1E-int	MaLR	chr15ORR1E-int88252912	NonProperStrand	1	1	-inf
chr12	14886199	14886218	LTR	MLT1K	MaLR	chr12MLT1K14886127	ProperStrand	2	chr11	113901593	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-17.8488
chr7	112784903	112784995	protein_coding	Arfip2	intron	ENSMUSG00000030881	NonProperStrand	24	chr7	112761677	112761719	protein_coding	Trim3	intron	ENSMUSG00000036989	NonProperStrand	139	1	-12.1916
chr17	39848124	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	89246272	89246334	protein_coding	Pbxip1	intron	ENSMUSG00000042613	ProperStrand	12	1	-4.3503
chr1	119049659	119049700	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int119049266	ProperStrand	8	chr1	119034371	119034422	Low_complexity	CT-rich	Low_complexity	chr1CT-rich119034260	NonProperStrand	1	1	-inf
chr11	69921186	69921276	LTR	RMER15	ERVL	chr11RMER1569921112	ProperStrand	14	chr11	69919248	69921175	protein_coding	Asgr2	exon	ENSMUSG00000040963	NonProperStrand	118	6	-20.1787
chr14	30558806	30559772	LINE	L1M5	L1	chr14L1M530558788	ProperStrand	1	chr10	127430994	127431067	protein_coding	Hsd17b6	intron	ENSMUSG00000025396	NonProperStrand	8	1	-inf
chr1	182092649	182092675	protein_coding	Cdc42bpa	utr3	ENSMUSG00000026490	ProperStrand	17	chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-14.0344
chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	26381636	26381714	protein_coding	Zmiz1	intron	ENSMUSG00000007817	ProperStrand	5	1	-3.1907
chr9	123461924	123461967	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	149122311	149122356	protein_coding	Mtus2	intron	ENSMUSG00000029651	ProperStrand	20	1	-3.0591
chr4	117558879	117559039	protein_coding-noncoding	Atp6v0b	utr3	ENSMUSG00000033379	NonProperStrand	8	chr4	117558749	117559173	protein_coding	Atp6v0b	intron	ENSMUSG00000033379	NonProperStrand	7	5	-inf
chr1	135605031	135605049	protein_coding	Atp2b4	intron	ENSMUSG00000026463	ProperStrand	26	chr8	93871715	93871806	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	1	-12.0862
chr4	43492783	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr3	90326584	90326672	protein_coding	S100a13	intron	ENSMUSG00000042312	ProperStrand	10	1	-10.7418
chr15	78885260	78885331	protein_coding-noncoding	Ankrd54	utr3	ENSMUSG00000033055	NonProperStrand	3	chr11	32719174	32719201	protein_coding	1700008A04Rik	intron	ENSMUSG00000020270	NonProperStrand	7	1	-25.2264
chr12	104697010	104697038	LINE	L1Md_F2	L1	chr12L1Md_F2104695744	ProperStrand	4	chr12	104694578	104694696	protein_coding	Ifi27l2b	exon	ENSMUSG00000021208	ProperStrand	25	1	-23.5101
chr13	73864271	73864361	LTR	RMER5	ERV1	chr13RMER573864226	NonProperStrand	1	chr13	73864103	73864203	SINE	B2_Mm1t	B2	chr13B2_Mm1t73864028	ProperStrand	1	1	-inf
chr17	61347251	61347274	LTR	MERVL-int	ERVL	chr17MERVL-int61345498	ProperStrand	3	chr4	139963263	139963281	LTR	ORR1C1	MaLR	chr4ORR1C1139963031	NonProperStrand	1	1	-inf
chr17	39846453	39846537	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	102095509	102095581	SINE	B2_Mm2	B2	chr15B2_Mm2102095501	ProperStrand	2	1	-5.3533
chr8	83653165	83653289	LINE	L1_Mus2	L1	chr8L1_Mus283652093	NonProperStrand	1	chr17	39846740	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846602	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	93745626	93745646	pseudogene	Gm14935	.	ENSMUSG00000081182	NonProperStrand	2	2	-inf
chr15	101008132	101008148	protein_coding	Acvr1b	intron	ENSMUSG00000000532	NonProperStrand	2	chr13	97190601	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr11	70409783	70409832	protein_coding	Mink1	intron	ENSMUSG00000020827	NonProperStrand	53	chr2	121413919	121413982	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	1	-11.7192
chr15	47539995	47540117	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr1	89461838	89461855	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	1	-6.5562
chr11	20303496	20303582	LTR	MTD	MaLR	chr11MTD20303404	NonProperStrand	1	chr16	31983870	31989007	protein_coding	Senp5	intron	ENSMUSG00000022772	ProperStrand	10	1	-inf
chr17	39843633	39843722	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr19	8825981	8826020	protein_coding	Stx5a	intron	ENSMUSG00000010110	ProperStrand	40	1	-3.2866
chr14	21831603	21831898	protein_coding	Vcl	intron	ENSMUSG00000021823	ProperStrand	63	chr5	24589451	24589469	protein_coding	Prkag2	intron	ENSMUSG00000028944	NonProperStrand	128	1	-10.4029
chr17	36981017	36981160	protein_coding	Trim26	intron	ENSMUSG00000024457	NonProperStrand	28	chr5	117938183	117938203	protein_coding	Ksr2	intron	ENSMUSG00000061578	ProperStrand	81	1	-12.9609
chr1	58552157	58552222	protein_coding	Orc2	intron	ENSMUSG00000026037	ProperStrand	21	chr5	142905673	142906725	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-10.3991
chrX	10504647	10504686	LINE	Lx6	L1	chrXLx610503177	NonProperStrand	3	chr7	28352493	28352577	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-17.6473
chr17	50420127	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr2	63826730	63826832	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-9.4441
chr17	39847277	39847339	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	71396728	71396748	protein_coding	Abca12	intron	ENSMUSG00000050296	ProperStrand	9	1	-3.1539
chr1	34211160	34211270	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr17	24720703	24720991	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-3.8709
chr17	39846883	39846903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	84441003	84441691	LTR	RLTR31A_Mm	ERVK	chr17RLTR31A_Mm84440686	ProperStrand	2	1	-5.3533
chrX	21079206	21079227	LINE	L1_Mus1	L1	chrXL1_Mus121078432	ProperStrand	1	chr4	117945238	117945373	protein_coding	Ptprf	intron	ENSMUSG00000033295	ProperStrand	98	1	-inf
chr18	25068046	25068095	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	chr7	99441184	99441200	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-4.5218
chr7	12761262	12761279	SINE	B1_Mm	Alu	chr7B1_Mm12761166	NonProperStrand	1	chr2	33051506	33051574	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-inf
chr13	97190563	97190603	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	119038938	119039025	protein_coding	Zfyve19	intron	ENSMUSG00000068580	ProperStrand	4	1	-10.7386
chr11	69668051	69669213	protein_coding	Tnk1	utr5	ENSMUSG00000001583	ProperStrand	269	chr12	109665034	109669797	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	2	-7.9963
chr7	36109243	36109343	SINE	B3	B2	chr7B336109248	ProperStrand	1	chr7	36109087	36109177	SINE	ID_B1	B4	chr7ID_B136109093	ProperStrand	1	1	-inf
chr1	138990170	138990200	LINE	L1Md_A	L1	chr1L1Md_A138990088	NonProperStrand	1	chr17	24721190	24721249	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	65	1	-inf
chr9	73125358	73125448	SINE	B3	B2	chr9B373125306	NonProperStrand	1	chr9	73125542	73125642	SINE	ID_B1	B4	chr9ID_B173125569	ProperStrand	1	1	-inf
chr11	22964252	22964352	LTR	RMER17C	ERVK	chr11RMER17C22964085	ProperStrand	1	chr11	22964547	22964637	SINE	B1_Mus2	Alu	chr11B1_Mus222964516	NonProperStrand	1	1	-inf
chr8	61583951	61584029	LINE	L1Md_A	L1	chr8L1Md_A61583514	NonProperStrand	1	chr8	13104548	13104616	protein_coding	Pcid2	intron	ENSMUSG00000038542	ProperStrand	42	1	-inf
chr13	23531386	23531477	LTR	LTR40b	ERVL	chr13LTR40b23531406	ProperStrand	3	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-14.9894
chr14	55863484	55863511	LINE	Lx5	L1	chr14Lx555862846	NonProperStrand	11	chr11	100705275	100705312	protein_coding	Stat5b	intron	ENSMUSG00000020919	ProperStrand	21	1	-17.6741
chr17	39842997	39843026	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	81044176	81049944	protein_coding	Map4k3	exon	ENSMUSG00000024242	ProperStrand	22	1	-7.3806
chr8	120417874	120417974	SINE	B4A	B4	chr8B4A120417854	NonProperStrand	4	chr8	120417760	120417850	Simple_repeat	(TATATG)n	Simple_repeat	chr8(TATATG)n120417770	ProperStrand	2	2	-inf
chr2	5379275	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr17	33952018	33952096	protein_coding	Kank3	intron	ENSMUSG00000042099	NonProperStrand	107	1	-3.4629
chr18	8201074	8201164	LINE	L1_Mur2	L1	chr18L1_Mur28200185	NonProperStrand	1	chr18	8201278	8201378	SINE	B1_Mm	Alu	chr18B1_Mm8201214	NonProperStrand	1	1	-inf
chr3	116595561	116595577	protein_coding	Frrs1	intron	ENSMUSG00000033386	NonProperStrand	19	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.7578
chr3	16228206	16228290	LINE	L1Md_F3	L1	chr3L1Md_F316228178	NonProperStrand	2	chr17	39847174	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr13	38650965	38651022	LINE	L1M4	L1	chr13L1M438650973	NonProperStrand	1	chr13	38651616	38651668	LINE	L1M4	L1	chr13L1M438651463	NonProperStrand	1	1	-inf
chr17	39847160	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	68902283	68902404	protein_coding-noncoding	Vamp2	utr5	ENSMUSG00000020894	ProperStrand	20	2	-3.2818
chr8	110905547	110905647	LINE	L1_Mus1	L1	chr8L1_Mus1110905333	ProperStrand	1	chr8	110905767	110905857	LINE	L1_Mus1	L1	chr8L1_Mus1110905691	NonProperStrand	1	1	-inf
chr1	39710242	39711392	lincRNA	D930019O06Rik	intron	ENSMUSG00000090677	NonProperStrand	1	chr17	27921038	27921062	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	NonProperStrand	106	1	-inf
chr6	112921793	112921865	LTR	RLTR28	ERVL	chr6RLTR28112921648	ProperStrand	2	chr6	112892646	112892728	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	95	1	-18.6969
chr3	102643990	102644080	protein_coding	Sycp1	intron	ENSMUSG00000027855	ProperStrand	1	chr9	10313714	10313814	protein_coding	Cntn5	intron	ENSMUSG00000039488	ProperStrand	39	1	-inf
chr6	38606249	38606286	LTR	MTEa	MaLR	chr6MTEa38606193	ProperStrand	4	chr13	44739648	44739681	SINE	B1_Mus2	Alu	chr13B1_Mus244739540	ProperStrand	1	1	-inf
chr15	39765406	39765450	protein_coding	Lrp12	intron	ENSMUSG00000022305	ProperStrand	2	chr6	90470320	90470418	protein_coding	Aldh1l1	intron	ENSMUSG00000030088	ProperStrand	124	1	-18.1346
chr14	18268997	18269038	LTR	ORR1A1	MaLR	chr14ORR1A118268996	NonProperStrand	26	chr2	90395137	90395168	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-11.4122
chr12	102571799	102571886	LINE	L1_Mus1	L1	chr12L1_Mus1102571205	ProperStrand	1	chr12	102570909	102570935	LINE	L1_Mus3	L1	chr12L1_Mus3102570267	ProperStrand	7	1	-inf
chr5	118758074	118758092	SINE	RSINE1	B4	chr5RSINE1118758009	NonProperStrand	3	chr13	63510353	63510416	protein_coding	Fancc	intron	ENSMUSG00000021461	ProperStrand	182	1	-16.1582
chr12	28710659	28710755	LINE	Lx2	L1	chr12Lx228710498	ProperStrand	8	chr17	39848098	39848159	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.1688
chr17	76829792	76829891	LINE	L1Md_F2	L1	chr17L1Md_F276829493	ProperStrand	1	chr17	76829370	76829460	SINE	B3A	B2	chr17B3A76829374	ProperStrand	1	1	-inf
chr18	69500922	69500975	LINE	Lx9	L1	chr18Lx969500603	ProperStrand	3	chr18	69491687	69491782	SINE	B1_Mur3	Alu	chr18B1_Mur369491656	ProperStrand	3	3	-inf
chr17	39847257	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	81333453	81333516	LTR	RMER2	ERV1	chr7RMER281332978	NonProperStrand	1	1	-inf
chr17	31251235	31251317	protein_coding	Abcg1	utr3	ENSMUSG00000024030	ProperStrand	3	chr13	47303692	47303721	protein_coding	Rnf144b	intron	ENSMUSG00000038068	NonProperStrand	2	1	-20.2824
chr17	39847069	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	98217271	98217369	protein_coding	Ppp1r1b	intron	ENSMUSG00000061718	ProperStrand	6	1	-3.9545
chr2	90760496	90760596	LINE	L1MB7	L1	chr2L1MB790760490	NonProperStrand	1	chr2	90760347	90760437	SINE	B1_Mm	Alu	chr2B1_Mm90760362	NonProperStrand	1	1	-inf
chr7	100498443	100498755	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int100495866	ProperStrand	26	chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	1	-13.9657
chr1	78454842	78458589	protein_coding	Farsb	intron	ENSMUSG00000026245	ProperStrand	84	chr8	84916348	84916559	protein_coding	Il15	intron	ENSMUSG00000031712	NonProperStrand	64	1	-11.2160
chr5	123096389	123096493	protein_coding	P2rx7	intron	ENSMUSG00000029468	ProperStrand	16	chr7	132985054	132985096	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	1	-11.5365
chr12	100340639	100340719	DNA	MER2	MER2_type	chr12MER2100340536	NonProperStrand	1	chr12	100341002	100341053	LINE	L1MCa	L1	chr12L1MCa100340824	NonProperStrand	1	1	-inf
chr1	53157543	53157642	LINE	L1Md_F2	L1	chr1L1Md_F253157537	NonProperStrand	1	chr17	39847513	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	4082174	4082260	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr8	22246458	22246506	LINE	L1_Mus1	L1	chr8L1_Mus122242950	ProperStrand	3	1	-14.0225
chr4	44012738	44012788	LINE	Lx7	L1	chr4Lx744012152	ProperStrand	13	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-15.2115
chr18	12925532	12925622	protein_coding-noncoding	Osbpl1a	utr3	ENSMUSG00000044252	ProperStrand	1	chr18	12925405	12925505	protein_coding	Osbpl1a	exon	ENSMUSG00000044252	ProperStrand	48	1	-inf
chr4	150237312	150239486	protein_coding	Errfi1	intron	ENSMUSG00000028967	ProperStrand	111	chr7	28350828	28351039	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-10.0867
chr7	130636241	130636307	protein_coding	Zkscan2	intron	ENSMUSG00000030757	NonProperStrand	48	chr9	110281285	110281333	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.0092
chr3	9972860	9972960	LTR	RMER17C-int	ERVK	chr3RMER17C-int9972618	NonProperStrand	1	chr3	9972542	9972632	LTR	RMER17C	ERVK	chr3RMER17C9972339	NonProperStrand	1	1	-inf
chr5	22697286	22697386	LINE	L1VL4	L1	chr5L1VL422696920	ProperStrand	1	chr7	47188341	47188431	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	1	-inf
chr17	4082120	4082210	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr12	117679505	117679605	protein_coding	Ncapg2	intron	ENSMUSG00000042029	ProperStrand	22	1	-12.8944
chr6	83364920	83366892	protein_coding	Tet3	intron	ENSMUSG00000034832	ProperStrand	18	chr9	64301073	64392952	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	2	-21.2076
chr17	39847224	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	26938614	26938751	LTR	MTA_Mm	MaLR	chr17MTA_Mm26938718	ProperStrand	1	1	-inf
chr2	73850930	73850946	LTR	RMER19C	ERVK	chr2RMER19C73850744	ProperStrand	1	chr7	49282561	49282668	protein_coding	Vmn2r59	intron	ENSMUSG00000092032	NonProperStrand	17	1	-inf
chr11	72405128	72405228	LTR	MTEb	MaLR	chr11MTEb72405096	ProperStrand	1	chr11	72405334	72405424	SINE	B3	B2	chr11B372405333	ProperStrand	1	1	-inf
chr5	145134065	145134139	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	chr4	56891420	56891494	protein_coding	D730040F13Rik	utr3	ENSMUSG00000055296	ProperStrand	140	1	-9.4206
chr6	12692748	12692838	protein_coding	Thsd7a	intron	ENSMUSG00000032625	NonProperStrand	12	chr6	12692928	12693028	rRNA	n-R5s160	.	ENSMUSG00000065030	ProperStrand	1	1	-inf
chr2	72788943	72789043	miRNA	AL844840.1	.	ENSMUSG00000092851	ProperStrand	1	chr2	72789076	72789166	protein_coding	Sp3	intron	ENSMUSG00000027109	ProperStrand	2	1	-inf
chr9	123461801	123461867	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr5	67800840	67800920	protein_coding	Bend4	intron	ENSMUSG00000092060	ProperStrand	30	2	-4.1898
chr7	25326426	25326458	SINE	B1_Mus1	Alu	chr7B1_Mus125326335	NonProperStrand	1	chr7	25340647	25340705	protein_coding	Xrcc1	intron	ENSMUSG00000051768	ProperStrand	67	1	-inf
chr7	134883572	134883662	LTR	RMER19A	ERVK	chr7RMER19A134883571	NonProperStrand	1	chr7	134883745	134883845	LTR	RMER19A	ERVK	chr7RMER19A134883661	NonProperStrand	1	1	-inf
chr17	39848598	39848705	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	1	-3.3650
chr3	14576704	14576722	LINE	Lx5	L1	chr3Lx514575408	ProperStrand	6	chr5	74839023	74839051	protein_coding	Scfd2	intron	ENSMUSG00000062110	NonProperStrand	18	1	-19.4534
chr8	109811802	109811856	DNA	RMER30	MER1_type	chr8RMER30109811747	NonProperStrand	1	chr8	109811963	109812002	SINE	B1F2	Alu	chr8B1F2109811905	NonProperStrand	2	1	-inf
chr18	6498817	6498888	protein_coding	Epc1	intron	ENSMUSG00000024240	NonProperStrand	6	chr8	124333542	124333625	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-11.6766
chr2	67147747	67147837	antisense	Gm13599	.	ENSMUSG00000087043	ProperStrand	2	chr2	71291439	71291539	protein_coding	Metap1d	intron	ENSMUSG00000041921	ProperStrand	13	1	-inf
chrX	74230586	74230697	LTR	MTC	MaLR	chrXMTC74230499	ProperStrand	5	chr9	123461925	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr1	97790852	97790952	LINE	Lx5	L1	chr1Lx597790711	ProperStrand	1	chr1	97791180	97791270	LTR	RLTR10	ERVK	chr1RLTR1097791044	NonProperStrand	1	1	-inf
chr9	26907217	26907307	protein_coding	Jam3	intron	ENSMUSG00000031990	NonProperStrand	6	chr14	33967459	33967559	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-15.5751
chr1	143806336	143806415	LINE	L1Md_T	L1	chr1L1Md_T143806270	NonProperStrand	1	chr1	143805775	143805835	LTR	RMER10A	ERVL	chr1RMER10A143805785	ProperStrand	1	1	-inf
chr13	44869943	44870014	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	95347116	95347177	protein_coding	Spop	intron	ENSMUSG00000057522	ProperStrand	38	1	-5.3775
chr17	39846816	39846882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	59691955	59691995	SINE	PB1D9	Alu	chr1PB1D959691905	ProperStrand	1	1	-inf
chr11	6265701	6265718	SINE	B3	B2	chr11B36265566	ProperStrand	1	chr11	106784975	106785009	SINE	ID4_	ID	chr11ID4_106784915	NonProperStrand	1	1	-inf
chr17	39847847	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	182834791	182834888	protein_coding	Pycr2	intron	ENSMUSG00000026520	ProperStrand	4	1	-3.7035
chr8	71306013	71306113	LINE	L1M2	L1	chr8L1M271305827	ProperStrand	1	chr8	71306287	71306377	LINE	L1M2	L1	chr8L1M271306237	ProperStrand	1	1	-inf
chr3	9547078	9547155	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	chr10	69990591	69990658	protein_coding	Fam13c	intron	ENSMUSG00000043259	ProperStrand	75	1	-6.0535
chr15	37534294	37534347	protein_coding	Ncald	intron	ENSMUSG00000051359	ProperStrand	16	chr1	159232752	159232795	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	57	1	-14.8176
chr11	19957749	19957839	SINE	PB1D7	Alu	chr11PB1D719957770	NonProperStrand	1	chr11	19995712	19995812	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	1	-inf
chr2	29440304	29440355	LTR	MT2A	ERVL	chr2MT2A29440070	ProperStrand	1	chr2	29439648	29439682	SINE	B1_Mur3	Alu	chr2B1_Mur329439534	ProperStrand	1	1	-inf
chr12	73353180	73353280	protein_coding	Rtn1	intron	ENSMUSG00000021087	ProperStrand	6	chr16	32337560	32337650	protein_coding	Ubxn7	intron	ENSMUSG00000053774	ProperStrand	53	1	-17.0058
chr18	13339552	13339652	LINE	L1Md_F2	L1	chr18L1Md_F213338772	NonProperStrand	1	chr18	13339794	13339884	LINE	L1_Mus2	L1	chr18L1_Mus213339760	NonProperStrand	2	1	-inf
chr4	63511090	63511106	protein_coding	Tnfsf8	intron	ENSMUSG00000028362	NonProperStrand	2	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-15.3042
chr2	71795389	71795453	DNA	URR1A	MER1_type	chr2URR1A71795330	NonProperStrand	6	chr17	39845463	39845532	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	1	-6.6890
chr5	137518898	137519094	protein_coding	Ap1s1	intron	ENSMUSG00000004849	NonProperStrand	23	chr1	136613851	136613941	protein_coding	Syt2	intron	ENSMUSG00000026452	ProperStrand	51	1	-14.2981
chr8	126869532	126869632	protein_coding	Galnt2	utr3	ENSMUSG00000089704	ProperStrand	7	chr8	126869405	126869495	protein_coding	Gm20388	utr3	ENSMUSG00000092329	ProperStrand	769	1	-11.3403
chr2	83334886	83334987	LINE	L1Md_T	L1	chr2L1Md_T83334089	ProperStrand	1	chr2	83349748	83349838	LTR	RLTR25A	ERVK	chr2RLTR25A83349510	ProperStrand	1	1	-inf
chr3	150022953	150023053	Simple_repeat	(TAGA)n	Simple_repeat	chr3(TAGA)n150022859	NonProperStrand	1	chr3	150023207	150023297	Simple_repeat	(TAGA)n	Simple_repeat	chr3(TAGA)n150023130	NonProperStrand	1	1	-inf
chr7	63155056	63155107	protein_coding-noncoding	Cyfip1	utr5	ENSMUSG00000030447	NonProperStrand	4	chr7	63155302	63155361	protein_coding	Cyfip1	exon	ENSMUSG00000030447	NonProperStrand	20	1	-20.7310
chr15	6762572	6762672	LINE	L1M2	L1	chr15L1M26762593	NonProperStrand	1	chr15	6762504	6762594	LTR	RMER6C	ERVK	chr15RMER6C6761984	NonProperStrand	2	1	-inf
chr12	80255266	80255345	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-6.7710
chr14	109535928	109536018	LINE	Lx7	L1	chr14Lx7109535920	NonProperStrand	1	chr14	109536281	109536381	LTR	MTC	MaLR	chr14MTC109536174	NonProperStrand	1	1	-inf
chr17	56599706	56599748	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	chr12	54696821	54696853	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-8.3670
chr5	105721919	105722019	protein_coding	Gbp6	intron	ENSMUSG00000079362	NonProperStrand	66	chr12	22724817	22724907	pseudogene	Gm20472	.	ENSMUSG00000073166	NonProperStrand	6	2	-inf
chr11	23405878	23412174	LTR	LTRIS2	ERV1	chr11LTRIS223405800	ProperStrand	3	chr11	23403818	23405879	SINE	B3	B2	chr11B323403804	ProperStrand	3	2	-20.2273
chr17	39847506	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	6926506	6926606	protein_coding	Ccdc88b	intron	ENSMUSG00000047810	NonProperStrand	1	1	-inf
chr18	35977953	35978054	SINE	B1_Mus1	Alu	chr18B1_Mus135977978	ProperStrand	2	chr18	35977869	35977959	SINE	B3A	B2	chr18B3A35977883	ProperStrand	2	2	-inf
chr11	116479490	116479576	protein_coding	Rhbdf2	intron	ENSMUSG00000020806	ProperStrand	55	chr9	44506565	44506632	protein_coding	Phldb1	intron	ENSMUSG00000048537	NonProperStrand	32	2	-20.5163
chr3	138750231	138750254	LINE	L2	L2	chr3L2138750206	NonProperStrand	1	chr4	48815689	48815715	LTR	MT2A	ERVL	chr4MT2A48815372	ProperStrand	1	1	-inf
chr16	90883664	90883766	protein_coding	4931408A02Rik	intron	ENSMUSG00000039903	ProperStrand	3	chr12	117878019	117878058	protein_coding	Ptprn2	intron	ENSMUSG00000056553	ProperStrand	87	1	-17.6303
chr16	84855875	84855920	protein_coding	Gabpa	intron	ENSMUSG00000008976	ProperStrand	42	chr7	126795738	126795953	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-9.4902
chr3	46860183	46860227	LINE	L1_Mus1	L1	chr3L1_Mus146859926	ProperStrand	2	chr8	104081870	104081911	LTR	ORR1A4-int	MaLR	chr8ORR1A4-int104081411	ProperStrand	2	1	-19.8939
chr5	115490312	115490398	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr5	113191393	113191468	protein_coding	Myo18b	intron	ENSMUSG00000072720	ProperStrand	234	1	-6.4487
chr9	15315279	15315324	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	chr7	19152478	19152584	protein_coding	Psg27	utr5	ENSMUSG00000070797	NonProperStrand	12	1	-13.7391
chr17	39847326	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	123450029	123450082	LTR	IAPEz-int	ERVK	chr4IAPEz-int123448356	ProperStrand	7	1	-3.6430
chr7	141448740	141451012	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	134	chr7	141447931	141448741	SINE	PB1D10	Alu	chr7PB1D10141447926	NonProperStrand	38	1	-11.3308
chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	chr1	43125265	43125282	protein_coding	Tgfbrap1	intron	ENSMUSG00000070939	ProperStrand	3	1	-14.9919
chr11	76417637	76417737	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	chr16	5049569	5049659	protein_coding	Glyr1	intron	ENSMUSG00000022536	ProperStrand	66	1	-9.1122
chr15	79255601	79255691	protein_coding	Csnk1e	intron	ENSMUSG00000022433	NonProperStrand	7	chr15	79481861	79481961	protein_coding	4933432B09Rik	intron	ENSMUSG00000042564	ProperStrand	17	1	-18.7319
chr17	6759559	6782674	LTR	RLTR1B-int	ERV1	chr17RLTR1B-int6781518	ProperStrand	1	chr9	123461964	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	59871690	59871737	protein_coding	Snx30	intron	ENSMUSG00000028385	ProperStrand	123	chrX	106203596	106203670	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	1	-10.3291
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	52113443	52113551	protein_coding	RP23-103L13.8	exon	ENSMUSG00000093412	NonProperStrand	2	1	-5.3533
chr19	21785903	21785936	LTR	RLTR10B2	ERVK	chr19RLTR10B221785823	ProperStrand	1	chr19	21785741	21785783	SINE	B1_Mus2	Alu	chr19B1_Mus221785648	ProperStrand	1	1	-inf
chr14	61427910	61428024	protein_coding	Mipep	intron	ENSMUSG00000021993	NonProperStrand	22	chr16	19883805	19883822	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-10.9310
chr6	47188018	47188053	protein_coding	Cntnap2	intron	ENSMUSG00000039419	NonProperStrand	121	chr5	35034256	35034337	protein_coding	Grk4	intron	ENSMUSG00000052783	ProperStrand	32	1	-11.8838
chr3	30914369	30914425	protein_coding	Prkci	intron	ENSMUSG00000037643	NonProperStrand	25	chrX	36197728	36197794	protein_coding	6030498E09Rik	intron	ENSMUSG00000051361	ProperStrand	6	1	-18.8823
chr19	40193936	40194036	LINE	Lx2	L1	chr19Lx240189486	ProperStrand	1	chr14	18211828	18211918	LTR	IAPEz-int	ERVK	chr14IAPEz-int18211152	NonProperStrand	1	1	-inf
chr17	39843005	39843039	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr4	153722192	153722209	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	43	1	-6.0404
chr17	39848375	39848465	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	46146703	46146803	protein_coding	Itk	intron	ENSMUSG00000020395	NonProperStrand	11	2	-7.6458
chr5	74365631	74365738	LTR	MTEa	MaLR	chr5MTEa74365444	ProperStrand	1	chr12	31631198	31631249	protein_coding	Sh3yl1	intron	ENSMUSG00000020669	NonProperStrand	18	1	-inf
chr17	39847276	39848060	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	27958641	27958720	protein_coding	Rab4b	intron	ENSMUSG00000053291	ProperStrand	9	1	-3.1539
chr17	30752149	30754983	LTR	ORR1A4	MaLR	chr17ORR1A430752641	ProperStrand	12	chr17	30752923	30755122	SINE	B3A	B2	chr17B3A30754991	ProperStrand	12	11	-22.6645
chr17	39846415	39846918	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	84829275	84909460	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	7	-3.9097
chr17	15977684	15977784	LINE	L1_Mus1	L1	chr17L1_Mus115977527	NonProperStrand	1	chr17	15977910	15978000	SINE	B1_Mus2	Alu	chr17B1_Mus215977840	NonProperStrand	1	1	-inf
chr6	3201480	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	55158969	55159048	protein_coding	Nrg4	intron	ENSMUSG00000032311	NonProperStrand	23	1	-4.6887
chr8	85057446	85057546	DNA	FordPrefect	Tip100	chr8FordPrefect85057261	NonProperStrand	3	chr17	39846722	39846812	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr9	36359418	36359508	LTR	MERVL_2A-int	ERVL	chr9MERVL_2A-int36359259	ProperStrand	1	chr9	36359069	36359169	Simple_repeat	(GA)n	Simple_repeat	chr9(GA)n36359029	NonProperStrand	1	1	-inf
chr11	69073535	69073562	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.0247
chr12	5077211	5077311	LINE	L1MB3	L1	chr12L1MB35076985	ProperStrand	1	chr12	5077407	5077497	LINE	L1MEf	L1	chr12L1MEf5077404	ProperStrand	1	1	-inf
chr17	39848124	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	101074678	101074749	SINE	MIRb	MIR	chr15MIRb101074698	NonProperStrand	1	1	-inf
chr8	78685531	78685629	LTR	LTRIS_Mus	ERV1	chr8LTRIS_Mus78685376	NonProperStrand	1	chr19	29612674	29612780	protein_coding	C030046E11Rik	intron	ENSMUSG00000038658	NonProperStrand	23	1	-inf
chr2	181715917	181716503	LINE	L1_Mur2	L1	chr2L1_Mur2181715450	NonProperStrand	2	chr5	90228123	90228251	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	1	-19.1050
chr17	39847276	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	59283388	59283416	protein_coding	Zfp867	intron	ENSMUSG00000054519	NonProperStrand	1	1	-inf
chr12	51959383	51959475	LINE	Lx3_Mus	L1	chr12Lx3_Mus51959281	ProperStrand	2	chr17	39847127	39847179	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-inf
chr8	44624253	44624270	LINE	L1Md_A	L1	chr8L1Md_A44622117	NonProperStrand	1	chr5	3829020	3829121	protein_coding	Krit1	intron	ENSMUSG00000000600	ProperStrand	9	1	-inf
chr7	127552892	127553180	SINE	B3	B2	chr7B3127552844	ProperStrand	2	chr7	127553180	127553280	protein_coding-noncoding	Abca16	utr5	ENSMUSG00000051900	ProperStrand	1	1	-inf
chr17	39847622	39847674	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	84341999	84345982	antisense	1500016L03Rik	.	ENSMUSG00000087211	ProperStrand	2	1	-5.4040
chr2	119098355	119098430	SINE	B3	B2	chr2B3119098280	NonProperStrand	1	chr11	49664164	49664205	protein_coding	Mapk9	intron	ENSMUSG00000020366	NonProperStrand	20	1	-inf
chr1	172187123	172187208	LINE	L1Md_T	L1	chr1L1Md_T172186301	NonProperStrand	2	chr17	39847611	39847686	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr16	22387728	22387801	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr4	42996325	43000221	protein_coding	Vcp	intron	ENSMUSG00000028452	ProperStrand	37	1	-10.0583
chr12	55069713	55069750	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr8	61323809	61323829	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-7.9921
chr4	40723065	40723155	SINE	B1_Mur4	Alu	chr4B1_Mur440723031	ProperStrand	1	chr4	40723163	40723263	SINE	MIR	MIR	chr4MIR40723181	ProperStrand	1	1	-inf
chr1	7315769	7315869	LINE	L1VL2	L1	chr1L1VL27315779	NonProperStrand	1	chr1	7315682	7315772	LINE	L1_Mm	L1	chr1L1_Mm7315592	ProperStrand	1	1	-inf
chr3	157543221	157543242	LTR	MLT1A1	MaLR	chr3MLT1A1157543191	ProperStrand	1	chr6	118404755	118404829	protein_coding	Zfp248	utr5	ENSMUSG00000030145	ProperStrand	20	1	-inf
chr8	71315149	71321801	LTR	ORR1C1-int	MaLR	chr8ORR1C1-int71314605	NonProperStrand	5	chr8	71321806	71322995	pseudogene	Gm15549	.	ENSMUSG00000081745	ProperStrand	4	4	-inf
chr6	86539085	86539147	LINE	L1Md_T	L1	chr6L1Md_T86539079	ProperStrand	3	chr13	97190546	97190573	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chrX	75534254	75534315	LINE	L1VL1	L1	chrXL1VL175532976	ProperStrand	2	chr17	39847165	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr14	8544303	8544393	LINE	L1Md_F2	L1	chr14L1Md_F28543810	NonProperStrand	1	chr1	73922421	73922521	LINE	L1MEf	L1	chr1L1MEf73922293	NonProperStrand	1	1	-inf
chr12	24898454	24898504	LINE	L1_Mus1	L1	chr12L1_Mus124898381	NonProperStrand	3	chr17	39847727	39847782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-8.1061
chr3	93471463	93471480	LTR	MTA_Mm	MaLR	chr3MTA_Mm93471142	NonProperStrand	2	chr3	9545623	9545737	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	2	-inf
chr7	112680950	112681014	LINE	L2a	L2	chr7L2a112680940	ProperStrand	2	chr7	112680706	112680799	LTR	IAPLTR2_Mm	ERVK	chr7IAPLTR2_Mm112680486	ProperStrand	6	2	-inf
chr18	9584752	9584842	LTR	RMER17A-int	ERVK	chr18RMER17A-int9584767	ProperStrand	1	chr18	9584986	9585086	LTR	RMER17A-int	ERVK	chr18RMER17A-int9584937	ProperStrand	1	1	-inf
chr14	99157106	99157206	LINE	L1_Mus4	L1	chr14L1_Mus499156839	ProperStrand	1	chr14	71341182	71341272	protein_coding	Gfra2	intron	ENSMUSG00000022103	ProperStrand	2	1	-inf
chr8	78067464	78067598	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	chr2	33733148	33733165	protein_coding	Fam125b	intron	ENSMUSG00000038740	ProperStrand	18	1	-10.3680
chr18	34459053	34459132	protein_coding	Apc	intron	ENSMUSG00000005871	NonProperStrand	35	chr18	36801921	36801942	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	1	-13.0791
chr7	29482776	29482876	protein_coding-noncoding	Fbxo27	utr5	ENSMUSG00000037463	NonProperStrand	1	chr7	29482934	29483025	protein_coding	Fbxo27	intron	ENSMUSG00000037463	NonProperStrand	9	1	-inf
chr15	25933940	25933999	LTR	MLT1A1-int	MaLR	chr15MLT1A1-int25933892	NonProperStrand	3	chr2	127225085	127225141	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n127225033	ProperStrand	1	1	-inf
chrX	129880518	129880606	LINE	L1Md_F2	L1	chrXL1Md_F2129880509	NonProperStrand	1	chr17	39848036	39848081	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	44869573	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	5379240	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	21	-12.5232
chr3	37682964	37683000	LTR	ORR1A2	MaLR	chr3ORR1A237682851	NonProperStrand	1	chr3	37684801	37684870	SINE	ID_B1	B4	chr3ID_B137684781	ProperStrand	1	1	-inf
chr3	74994641	74994731	LINE	L1Md_F2	L1	chr3L1Md_F274994635	NonProperStrand	1	chr3	74994865	74994965	LINE	L1Md_F2	L1	chr3L1Md_F274994808	ProperStrand	1	1	-inf
chr14	31018749	31018814	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr17	56423524	56423582	protein_coding	Plin3	intron	ENSMUSG00000024197	ProperStrand	33	1	-10.3208
chr17	80170696	80170798	DNA	RCHARR1	MER1_type	chr17RCHARR180170207	ProperStrand	1	chr9	123461806	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	70963682	70963760	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr6	48022662	48022686	protein_coding	Zfp746	intron	ENSMUSG00000057691	NonProperStrand	1	1	-inf
chr8	25540643	25540685	lincRNA	Gm16625	intron	ENSMUSG00000084900	ProperStrand	52	chr3	30829211	30829243	protein_coding	Phc3	intron	ENSMUSG00000037652	ProperStrand	4	1	-18.1716
chr12	40533774	40533864	LINE	Lx6	L1	chr12Lx640532302	NonProperStrand	1	chr12	40533885	40533985	LTR	RLTR18	ERVK	chr12RLTR1840533848	NonProperStrand	1	1	-inf
chr17	39845748	39845848	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	31959612	31959702	Simple_repeat	(TGGA)n	Simple_repeat	chr17(TGGA)n31959374	NonProperStrand	1	1	-inf
chr2	106785104	106785133	LTR	MT2_Mm	ERVL	chr2MT2_Mm106784757	NonProperStrand	1	chr17	35384395	35384503	protein_coding	Ddx39b	intron	ENSMUSG00000019432	NonProperStrand	9	1	-inf
chr15	59025010	59025100	LINE	L2a	L2	chr15L2a59025022	NonProperStrand	6	chr15	59024871	59024971	SINE	RSINE1	B4	chr15RSINE159024886	ProperStrand	4	3	-inf
chr17	39847656	39847765	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	6116038	6116077	protein_coding	Sac3d1	utr3	ENSMUSG00000024790	ProperStrand	5	1	-3.2379
chr6	119380323	119380347	LINE	Lx8	L1	chr6Lx8119380196	NonProperStrand	1	chr9	70431475	70431609	protein_coding	Sltm	intron	ENSMUSG00000032212	NonProperStrand	22	1	-inf
chr12	47378843	47378943	LINE	L1Md_F2	L1	chr12L1Md_F247375352	ProperStrand	1	chr12	47191573	47191663	LINE	Lx9	L1	chr12Lx947190724	ProperStrand	1	1	-inf
chr7	112697406	112697449	DNA	MER58B	MER1_type	chr7MER58B112697329	NonProperStrand	1	chr4	114954878	114954977	LINE	L1_Mus1	L1	chr4L1_Mus1114954314	NonProperStrand	1	1	-inf
chr7	96278307	96278519	LINE	Lx5	L1	chr7Lx596277864	NonProperStrand	18	chr17	39847160	39847285	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-3.5608
chr6	92170357	92170433	LTR	MLT1H	MaLR	chr6MLT1H92170351	NonProperStrand	1	chr6	92170634	92170673	SINE	B1_Mur3	Alu	chr6B1_Mur392170615	NonProperStrand	2	1	-inf
chr15	97049931	97049953	LTR	ORR1E	MaLR	chr15ORR1E97049870	ProperStrand	11	chr9	123461951	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	139998601	139998701	protein_coding	Fam53b	intron	ENSMUSG00000030956	ProperStrand	12	2	-6.8720
chr16	17507782	17507882	SINE	B1_Mur4	Alu	chr16B1_Mur417507803	ProperStrand	1	chr16	17507608	17507698	SINE	ID_B1	B4	chr16ID_B117507603	ProperStrand	1	1	-inf
chr8	83574511	83594344	LINE	Lx3_Mus	L1	chr8Lx3_Mus83571406	ProperStrand	29	chr17	6139538	6139558	protein_coding	Tulp4	intron	ENSMUSG00000034377	ProperStrand	56	1	-13.6328
chr8	85024291	85025175	LINE	L1MEg	L1	chr8L1MEg85024997	NonProperStrand	1	chr8	85019774	85019812	LTR	MTE2b	MaLR	chr8MTE2b85019506	ProperStrand	4	1	-inf
chr9	71056718	71056808	LTR	MTD	MaLR	chr9MTD71056588	NonProperStrand	1	chr9	71057313	71057413	SINE	B4	B4	chr9B471057244	ProperStrand	1	1	-inf
chr6	129547796	129547826	protein_coding	Klrd1	intron	ENSMUSG00000030165	ProperStrand	9	chr8	18721854	18721931	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-10.7791
chr6	88478230	88478330	LTR	RLTR12B	ERVK	chr6RLTR12B88478200	ProperStrand	2	chr6	88478136	88478226	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n88478130	ProperStrand	2	2	-inf
chr17	39848135	39848200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	72341993	72342016	protein_coding	Gmip	exon	ENSMUSG00000036246	ProperStrand	5	1	-6.1691
chr6	8448574	8448663	lincRNA	A430035B10Rik	intron	ENSMUSG00000087305	ProperStrand	1	chr6	3518797	3518897	protein_coding	Ccdc132	intron	ENSMUSG00000001376	ProperStrand	42	1	-inf
chr15	82808559	82808649	SINE	ID4	ID	chr15ID482808562	NonProperStrand	1	chr15	82808449	82808548	Unknown	YREP_Mm	Unknown	chr15YREP_Mm82808434	ProperStrand	1	1	-inf
chr11	12319341	12319397	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr1	189126290	189126308	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-10.0203
chr9	123461922	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	21524968	21525042	protein_coding	Zfp677	intron	ENSMUSG00000062743	ProperStrand	5	1	-5.8308
chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	135408036	135409415	LTR	MTD	MaLR	chr1MTD135407798	NonProperStrand	1	1	-inf
chr12	24853597	24853631	LTR	MMERVK10C-int	ERVK	chr12MMERVK10C-int24851217	ProperStrand	8	chr9	123462015	123462039	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr1	130595599	130595653	LTR	MTC	MaLR	chr1MTC130595323	ProperStrand	1	chr5	115489487	115489580	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-inf
chr1	153095744	153095781	LINE	Lx8	L1	chr1Lx8153095700	ProperStrand	1	chr1	153095443	153095561	LTR	ORR1A2	MaLR	chr1ORR1A2153095372	NonProperStrand	1	1	-inf
chr4	128993353	128993391	lincRNA	Gm17525	intron	ENSMUSG00000091673	ProperStrand	6	chr9	123462111	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr16	94625055	94688247	protein_coding-noncoding	Ttc3	utr5	ENSMUSG00000040785	ProperStrand	8	chr16	94624961	94688109	protein_coding	Ttc3	utr3	ENSMUSG00000040785	ProperStrand	131	8	-inf
chr15	53280703	53280785	LINE	Lx8	L1	chr15Lx853280715	ProperStrand	4	chr2	163732996	163735419	protein_coding	Rims4	intron	ENSMUSG00000035226	ProperStrand	4	1	-inf
chr10	45717892	45717982	LINE	L1M2	L1	chr10L1M245717761	ProperStrand	1	chr10	45717423	45717523	LINE	Lx9	L1	chr10Lx945717065	ProperStrand	1	1	-inf
chr19	15906059	15906113	LINE	L1MA5	L1	chr19L1MA515906061	ProperStrand	2	chr9	118674952	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr17	39847531	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	58126538	58128662	protein_coding	Zfp692	intron	ENSMUSG00000037243	NonProperStrand	5	1	-3.2379
chr10	40258543	40258623	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	68552419	68552436	protein_coding	Myh10	intron	ENSMUSG00000020900	ProperStrand	3	1	-11.6731
chr17	39846747	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	13074959	13074982	SINE	B1_Mus1	Alu	chr19B1_Mus113074929	NonProperStrand	4	2	-6.6967
chr4	119276674	119276779	protein_coding-noncoding	Foxj3	utr5	ENSMUSG00000032998	NonProperStrand	7	chr6	144630424	144630443	protein_coding	Sox5	intron	ENSMUSG00000041540	ProperStrand	44	1	-17.0870
chr14	60640583	60640677	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr6	100236499	100236544	protein_coding	Rybp	exon	ENSMUSG00000072872	ProperStrand	21	1	-11.7150
chr7	12930796	12930863	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr1	128114543	128188381	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	2	-14.8112
chr17	39846427	39846467	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	104081870	104081903	LTR	ORR1A4-int	MaLR	chr8ORR1A4-int104081411	ProperStrand	2	1	-5.3533
chr1	130783623	130783713	SINE	B3A	B2	chr1B3A130783648	NonProperStrand	1	chr1	131433779	131433879	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-inf
chr6	120294424	120294514	protein_coding	Ccdc77	intron	ENSMUSG00000030177	ProperStrand	62	chr6	120224573	120225130	protein_coding	B4galnt3	intron	ENSMUSG00000041372	ProperStrand	61	2	-18.8020
chr17	39848534	39848610	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr18	62504436	62504494	protein_coding	Htr4	intron	ENSMUSG00000026322	NonProperStrand	28	1	-3.0052
chr3	35754383	35778097	LINE	L1_Mus4	L1	chr3L1_Mus435775832	ProperStrand	4	chr3	35754298	35754388	protein_coding	Atp11b	utr3	ENSMUSG00000037400	ProperStrand	8	2	-inf
chr7	120725164	120725264	LTR	ORR1B1	MaLR	chr7ORR1B1120724962	NonProperStrand	1	chr7	120444444	120444534	protein_coding	Arntl	intron	ENSMUSG00000055116	NonProperStrand	4	1	-inf
chr11	109011647	109011693	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	72543826	72543927	protein_coding	Mau2	intron	ENSMUSG00000031858	ProperStrand	21	1	-8.2014
chr11	33427786	33427886	LTR	RLTR13B3	ERVK	chr11RLTR13B333427693	ProperStrand	2	chr7	28386862	28386952	protein_coding	Akt2	intron	ENSMUSG00000004056	NonProperStrand	46	2	-inf
chr7	113104438	113104454	processed_transcript	RP23-466I14.1	.	ENSMUSG00000093378	ProperStrand	23	chr8	123035127	123035153	protein_coding	Gse1	intron	ENSMUSG00000031822	NonProperStrand	68	1	-13.7127
chr17	29167864	29167954	SINE	B1_Mm	Alu	chr17B1_Mm29167801	NonProperStrand	3	chr17	29167956	29168056	SINE	B1_Mur2	Alu	chr17B1_Mur229167966	NonProperStrand	3	3	-inf
chr17	46806098	46806221	protein_coding	Rrp36	intron	ENSMUSG00000023971	ProperStrand	9	chr7	16422199	16422215	protein_coding	Obox6	intron	ENSMUSG00000041583	NonProperStrand	11	1	-19.5805
chr18	82986820	82986920	LINE	L1MA4	L1	chr18L1MA482986836	NonProperStrand	4	chr3	37542112	37542202	protein_coding	Spry1	exon	ENSMUSG00000037211	ProperStrand	5	4	-inf
chr11	41507802	41507892	LTR	RMER13B	ERVK	chr11RMER13B41506974	NonProperStrand	1	chr11	41508060	41508160	SINE	RSINE1	B4	chr11RSINE141508078	NonProperStrand	1	1	-inf
chr14	25867892	25867985	LINE	L1MD	L1	chr14L1MD25867875	NonProperStrand	1	chr14	25863397	25863423	SINE	MIRb	MIR	chr14MIRb25863287	NonProperStrand	1	1	-inf
chr2	154531253	154531343	LINE	L2	L2	chr2L2154531207	ProperStrand	1	chr2	154531373	154534944	LTR	ORR1D1	MaLR	chr2ORR1D1154534649	ProperStrand	1	1	-inf
chr11	120348064	120348472	lincRNA	Gm16755	intron	ENSMUSG00000086218	ProperStrand	60	chr2	5379307	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.5482
chr17	39847440	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	80931633	80931701	protein_coding	Celf5	intron	ENSMUSG00000034818	NonProperStrand	6	2	-5.2646
chr4	140042105	140042205	LTR	MTEb	MaLR	chr4MTEb140042091	NonProperStrand	1	chr4	140041913	140042003	SINE	ID_B1	B4	chr4ID_B1140041902	NonProperStrand	1	1	-inf
chr17	39846000	39846090	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	69580498	69586973	protein_coding	Zbtb4	intron	ENSMUSG00000018750	ProperStrand	30	1	-3.1847
chr6	78434697	78434787	LINE	L1Md_A	L1	chr6L1Md_A78434706	NonProperStrand	2	chr6	78434583	78434683	SINE	B2_Mm2	B2	chr6B2_Mm278434478	NonProperStrand	1	1	-inf
chr17	39843824	39843934	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr6	51465221	51466154	SINE	B1_Mur4	Alu	chr6B1_Mur451465128	NonProperStrand	6	1	-7.5378
chr10	119961009	119961034	LTR	MTC	MaLR	chr10MTC119961011	ProperStrand	1	chr13	100778855	100778949	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	1	-inf
chr12	83693476	83693566	LTR	MTD	MaLR	chr12MTD83693301	ProperStrand	2	chr12	83693583	83693683	SINE	B2_Mm2	B2	chr12B2_Mm283693574	NonProperStrand	2	2	-inf
chr7	124817442	124817542	LTR	MLT1J2	MaLR	chr7MLT1J2124817452	ProperStrand	1	chr5	30060682	30060772	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	1	-inf
chr17	39847324	39847365	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	86700986	86701079	protein_coding	Tmed10	intron	ENSMUSG00000021248	ProperStrand	7	1	-3.6430
chr9	20936548	20936648	SINE	B1_Mus1	Alu	chr9B1_Mus120936504	NonProperStrand	5	chr9	20936652	20936742	SINE	B2_Mm1t	B2	chr9B2_Mm1t20936652	ProperStrand	4	4	-inf
chr7	85985007	85985107	protein_coding	Det1	intron	ENSMUSG00000030610	ProperStrand	3	chr5	64209529	64209619	protein_coding	0610040J01Rik	intron	ENSMUSG00000060512	ProperStrand	56	1	-18.2742
chr13	44869626	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr6	34775035	34775077	protein_coding	Agbl3	intron	ENSMUSG00000038836	ProperStrand	8	1	-8.5479
chr12	69732336	69732449	LINE	L1_Mus3	L1	chr12L1_Mus369731825	ProperStrand	6	chr5	38608233	38608373	protein_coding	Zbtb49	intron	ENSMUSG00000029127	ProperStrand	5	5	-inf
chr18	44400404	44405298	LINE	L1Md_T	L1	chr18L1Md_T44401773	ProperStrand	9	chr18	44399731	44400386	LTR	RMER12B	ERVK	chr18RMER12B44399983	ProperStrand	1	1	-inf
chrX	95025862	95025878	LINE	L1M2	L1	chrXL1M295025539	NonProperStrand	10	chr9	123461828	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-7.4520
chr11	75861341	75861417	protein_coding	Vps53	intron	ENSMUSG00000017288	ProperStrand	22	chr11	33754855	33754921	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	1	-15.1057
chr1	161827031	161827070	protein_coding	Tnr	intron	ENSMUSG00000015829	NonProperStrand	16	chr13	97190561	97190612	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chr5	146260994	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	12930796	12930854	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	1	-4.5090
chr17	46568104	46568204	protein_coding-noncoding	Crip3	utr5	ENSMUSG00000023968	NonProperStrand	3	chr17	46569523	46569613	protein_coding	Slc22a7	intron	ENSMUSG00000067144	ProperStrand	8	3	-inf
chr8	83573506	83573536	LINE	Lx3_Mus	L1	chr8Lx3_Mus83571406	ProperStrand	29	chr11	69917283	69917443	protein_coding	Asgr2	intron	ENSMUSG00000040963	NonProperStrand	118	1	-12.1339
chr7	103550796	103550896	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	chr5	111334441	111334531	pseudogene	Gm15989	.	ENSMUSG00000081104	NonProperStrand	1	1	-inf
chr19	45040598	45040683	protein_coding	Fam178a	intron	ENSMUSG00000036097	NonProperStrand	21	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.5559
chr17	74474821	74474839	LINE	L1_Mus1	L1	chr17L1_Mus174474766	ProperStrand	1	chr17	39846295	39846421	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846759	39846786	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	16387500	16387537	LTR	RLTR10-int	ERVK	chr7RLTR10-int16387053	NonProperStrand	2	1	-5.3533
chr6	90808537	90808627	LTR	ORR1C2-int	MaLR	chr6ORR1C2-int90808559	ProperStrand	1	chr6	90808442	90808542	Other	RMER1B	Other	chr6RMER1B90807778	NonProperStrand	4	1	-inf
chrX	20679613	20679703	LINE	L1Md_T	L1	chrXL1Md_T20678748	ProperStrand	9	chrX	20679700	20680800	LINE	L1Md_T	L1	chrXL1Md_T20679691	ProperStrand	20	3	-inf
chr14	59568722	59568779	LINE	L1Md_T	L1	chr14L1Md_T59566974	NonProperStrand	14	chr11	103066984	103067051	protein_coding	1700023F06Rik	intron	ENSMUSG00000020940	NonProperStrand	20	4	-inf
chr8	46582826	46582850	LINE	L1_Mus1	L1	chr8L1_Mus146582064	ProperStrand	1	chr2	166065946	166066029	Simple_repeat	(CAGCT)n	Simple_repeat	chr2(CAGCT)n166065910	ProperStrand	1	1	-inf
chr10	40258589	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	1	-5.5992
chr2	73842415	73845452	LTR	MTD	MaLR	chr2MTD73842407	NonProperStrand	1	chr13	97190561	97190586	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr2	177198725	177198815	LINE	L1_Mus1	L1	chr2L1_Mus1177197552	ProperStrand	2	chr16	44109576	44111123	protein_coding	Atp6v1a	intron	ENSMUSG00000052459	ProperStrand	36	1	-20.7183
chr17	39846415	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	55628639	55631827	protein_coding	Ddx41	utr3	ENSMUSG00000021494	NonProperStrand	3	1	-4.3017
chr4	155349934	155350024	LINE	L1Md_F2	L1	chr4L1Md_F2155349911	NonProperStrand	4	chr4	155349836	155349936	SINE	B1_Mm	Alu	chr4B1_Mm155349764	NonProperStrand	3	3	-inf
chr9	50735235	50735335	protein_coding	Sik2	intron	ENSMUSG00000037112	ProperStrand	10	chr5	121784325	121784415	protein_coding	Gm15800	intron	ENSMUSG00000042744	ProperStrand	172	1	-13.5757
chr3	34069055	34069082	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr15	58421880	58424231	protein_coding	Fer1l6	intron	ENSMUSG00000037106	ProperStrand	38	1	-11.7821
chr2	78222382	78222482	LINE	Lx2	L1	chr2Lx278221831	ProperStrand	1	chr2	78222577	78222667	LINE	Lx2	L1	chr2Lx278222488	NonProperStrand	1	1	-inf
chr17	39847225	39847265	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	86544680	86544696	protein_coding	Cltc	intron	ENSMUSG00000047126	NonProperStrand	4	1	-4.8204
chr15	96362578	96362670	LTR	MTEa	MaLR	chr15MTEa96362569	NonProperStrand	1	chr17	39847636	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	51701089	51701189	LTR	IAPEY3-int	ERVK	chr16IAPEY3-int51700936	NonProperStrand	1	chr16	51700855	51700945	LTR	RLTR10B2	ERVK	chr16RLTR10B251700864	NonProperStrand	1	1	-inf
chr8	3643449	3643539	protein_coding	Stxbp2	utr3	ENSMUSG00000004626	NonProperStrand	3	chr15	81922763	81922863	protein_coding	Mei1	intron	ENSMUSG00000068117	NonProperStrand	96	1	-17.4336
chr5	114852003	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr1	152567423	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	1	-8.6056
chr17	4082184	4082274	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr5	49754804	49754904	protein_coding	Kcnip4	intron	ENSMUSG00000029088	ProperStrand	26	1	-9.3443
chr8	111668529	111668621	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	ProperStrand	53	chr5	72932286	72932322	protein_coding	Nfxl1	intron	ENSMUSG00000072889	NonProperStrand	20	1	-14.5011
chr1	100180181	100180215	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr5	144860331	144860355	SINE	B4	B4	chr5B4144860182	ProperStrand	1	1	-inf
chr17	39846379	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	56544459	56544569	LTR	MLT1H	MaLR	chr18MLT1H56544378	ProperStrand	2	1	-5.3533
chr5	88659668	88659710	LINE	L1Md_F2	L1	chr5L1Md_F288658369	ProperStrand	4	chr17	39846660	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr19	5797774	5797803	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	108463297	108463378	protein_coding	Impdh2	intron	ENSMUSG00000062867	ProperStrand	2	1	-11.8135
chr11	49262430	49262513	LTR	ETnERV2-int	ERVK	chr11ETnERV2-int49259003	ProperStrand	1	chr17	39847445	39847518	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	109011656	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	94750174	94755211	LINE	L1_Mus1	L1	chr17L1_Mus194747863	ProperStrand	9	1	-9.9559
chr5	45763868	45763968	LINE	L1MB4	L1	chr5L1MB445763783	NonProperStrand	1	chr17	39847740	39847802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	50310962	50311062	Simple_repeat	(TA)n	Simple_repeat	chr5(TA)n50310958	ProperStrand	1	chr4	111122898	111122988	protein_coding	Bend5	intron	ENSMUSG00000028545	ProperStrand	2	1	-inf
chr11	96805255	96805354	lincRNA	D030028A08Rik	intron	ENSMUSG00000078700	ProperStrand	59	chr13	35854519	35854566	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-8.5320
chr11	88831413	88831561	LTR	RMER6B	ERVK	chr11RMER6B88831378	NonProperStrand	4	chr11	88831547	88845363	protein_coding	Coil	utr5	ENSMUSG00000033983	NonProperStrand	94	2	-inf
chr4	47379234	47379313	protein_coding	Tgfbr1	intron	ENSMUSG00000007613	ProperStrand	20	chr5	114611166	114611183	protein_coding	Acacb	intron	ENSMUSG00000042010	NonProperStrand	38	1	-15.1867
chr13	9834303	9834384	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr8	94857983	94858046	protein_coding	4933436C20Rik	intron	ENSMUSG00000031736	NonProperStrand	27	1	-10.7202
chr1	179785925	179785962	LINE	L1MB3	L1	chr1L1MB3179785774	ProperStrand	1	chr1	179786447	179786494	LTR	RLTR20B3	ERVK	chr1RLTR20B3179786344	ProperStrand	1	1	-inf
chrX	7863822	7863908	SINE	B1F	Alu	chrXB1F7863766	ProperStrand	1	chrX	7863171	7863247	SINE	B3	B2	chrXB37863060	ProperStrand	1	1	-inf
chr17	39846718	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	126741425	126741493	protein_coding-noncoding	2010106G01Rik	utr3	ENSMUSG00000027366	NonProperStrand	3	1	-4.3017
chr4	140966578	140966598	antisense	Gm13075	.	ENSMUSG00000086061	ProperStrand	18	chr4	140966609	140971172	protein_coding	Clcnkb	exon	ENSMUSG00000006216	NonProperStrand	4	1	-20.0512
chr13	112578181	112578254	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr4	138548884	138548967	protein_coding	Tmco4	intron	ENSMUSG00000041143	ProperStrand	12	1	-7.3978
chr3	153909373	153909450	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr5	31075994	31076028	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	1	-6.6059
chr6	124716796	124716924	protein_coding-noncoding	Eno2	utr3	ENSMUSG00000004267	NonProperStrand	11	chr13	54687633	54687658	protein_coding	Nop16	intron	ENSMUSG00000025869	ProperStrand	15	1	-18.2570
chr1	192745599	192745645	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr7	141262089	141262181	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-10.2240
chr1	177027293	177027387	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	chr4	153722192	153722209	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	43	1	-11.9942
chr10	128490981	128492063	LINE	L1Md_F3	L1	chr10L1Md_F3128488776	ProperStrand	4	chr6	3201455	3201531	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-8.3508
chr1	54424632	54424662	protein_coding-noncoding	Ccdc150	utr3	ENSMUSG00000025983	NonProperStrand	1	chr1	54425168	54425233	protein_coding	Ccdc150	exon	ENSMUSG00000025983	NonProperStrand	15	1	-inf
chr11	88646825	88646879	LTR	ORR1E	MaLR	chr11ORR1E88646791	NonProperStrand	1	chr7	114758401	114758444	protein_coding	Ppfibp2	intron	ENSMUSG00000036528	ProperStrand	7	1	-inf
chrX	103462561	103462651	LINE	L1MD1	L1	chrXL1MD1103462341	NonProperStrand	3	chrX	103462673	103462773	LINE	L1MD1	L1	chrXL1MD1103462698	NonProperStrand	3	1	-20.2168
chr8	106938309	106938378	SINE	ID	ID	chr8ID106938327	NonProperStrand	1	chr8	106972703	106972763	protein_coding	Ccdc79	intron	ENSMUSG00000052616	NonProperStrand	63	1	-inf
chr17	24720673	24720717	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr1	59201235	59201333	protein_coding	Mpp4	intron	ENSMUSG00000079550	ProperStrand	26	1	-10.6911
chr15	53266019	53266042	LINE	L1_Mur3	L1	chr15L1_Mur353265998	ProperStrand	3	chr15	53275143	53275243	LTR	MERVL_2A-int	ERVL	chr15MERVL_2A-int53274483	ProperStrand	7	1	-25.2264
chr18	77780242	77780266	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr5	24376054	24376166	protein_coding	Prkag2	intron	ENSMUSG00000028944	NonProperStrand	128	1	-8.2914
chr7	29137634	29137711	protein_coding	Rps16	utr3	ENSMUSG00000037563	ProperStrand	1	chr10	80417214	80417317	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	11	1	-inf
chr2	107150694	107150794	LTR	RLTR20D	ERVK	chr2RLTR20D107150681	ProperStrand	1	chr2	107150912	107151002	LTR	RLTR20D	ERVK	chr2RLTR20D107150865	ProperStrand	1	1	-inf
chr17	39843825	39843906	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	24972330	24972368	LTR	BGLII	ERVK	chr2BGLII24972332	NonProperStrand	2	1	-10.2298
chr17	39846750	39846796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	10350656	10350746	protein_coding-noncoding	Zfand1	utr3	ENSMUSG00000039795	ProperStrand	1	1	-inf
chr13	97488399	97488499	LTR	MT2C_Mm	ERVL	chr13MT2C_Mm97488373	NonProperStrand	22	chr2	52123878	52123968	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-12.3984
chr3	32523188	32523280	LINE	L1Md_A	L1	chr3L1Md_A32522075	NonProperStrand	3	chr13	44869626	44869848	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr6	65781406	65781630	protein_coding-noncoding	Prdm5	utr5	ENSMUSG00000029913	ProperStrand	3	chr6	65781124	65781292	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	2	-20.3604
chr4	108071298	108071398	SINE	B4	B4	chr4B4108071326	NonProperStrand	1	chr4	108055488	108063895	protein_coding	Fam159a	intron	ENSMUSG00000059816	ProperStrand	5	1	-inf
chr10	81495436	81495536	LINE	L1VL2	L1	chr10L1VL281495184	ProperStrand	2	chr10	81495750	81495840	LINE	L1_Mur2	L1	chr10L1_Mur281495711	NonProperStrand	1	1	-inf
chr3	7672613	7672713	lincRNA	Gm16685	intron	ENSMUSG00000086143	NonProperStrand	2	chr13	25160580	25160670	protein_coding	Dcdc2a	intron	ENSMUSG00000035910	NonProperStrand	8	1	-23.4058
chr10	78463688	78463768	LINE	L1_Mur2	L1	chr10L1_Mur278462902	NonProperStrand	2	chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr8	18718989	18719132	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-3.8929
chr9	123462082	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	99651504	99651583	protein_coding	Pgm2	exon	ENSMUSG00000025791	NonProperStrand	16	1	-3.4729
chr17	39847880	39847908	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	124901761	124901799	protein_coding	Zc3h18	intron	ENSMUSG00000017478	ProperStrand	4	1	-3.7035
chr17	39847863	39847949	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	117267307	117267383	SINE	ID4	ID	chr11ID4117267325	ProperStrand	1	1	-inf
chr5	108089333	108089400	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	chr5	115248643	115248700	protein_coding	Ankrd13a	intron	ENSMUSG00000041870	NonProperStrand	64	1	-10.9478
chr5	56036836	56036926	LINE	L1_Rod	L1	chr5L1_Rod56035567	ProperStrand	1	chr5	56037090	56037190	LINE	Lx2A	L1	chr5Lx2A56037073	NonProperStrand	1	1	-inf
chrX	165922615	165922715	LINE	Lx2B	L1	chrXLx2B165921801	ProperStrand	1	chrX	165923055	165923145	LTR	RMER19B	ERVK	chrXRMER19B165922848	NonProperStrand	1	1	-inf
chr2	20743509	20743576	LINE	L1MA4	L1	chr2L1MA420743470	NonProperStrand	2	chr6	3201472	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr2	9147465	9147565	LINE	Lx	L1	chr2Lx9146216	NonProperStrand	1	chr5	138425329	138425419	protein_coding	Azgp1	intron	ENSMUSG00000037053	NonProperStrand	1	1	-inf
chr8	31149899	31149950	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr11	106261232	106261273	protein_coding	Ern1	intron	ENSMUSG00000020715	NonProperStrand	15	1	-14.3472
chr1	89663243	89663282	protein_coding-noncoding	Atg16l1	utr5	ENSMUSG00000026289	ProperStrand	32	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.7157
chr17	39847037	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	71027229	71027248	Simple_repeat	(TG)n	Simple_repeat	chr16(TG)n71027234	ProperStrand	1	1	-inf
chr17	4082296	4082386	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr16	41622549	41622649	protein_coding	Lsamp	intron	ENSMUSG00000061080	ProperStrand	10	1	-14.5314
chr9	123462056	123462097	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	98089411	98089451	protein_coding	Hmgcs2	intron	ENSMUSG00000027875	ProperStrand	19	1	-3.1531
chr2	5379296	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr12	86028086	86028123	protein_coding	Tmem90a	intron	ENSMUSG00000071234	NonProperStrand	27	1	-6.1101
chr12	110459513	110459622	LINE	L1_Mm	L1	chr12L1_Mm110459175	ProperStrand	4	chr17	39846479	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr5	32746546	32746643	SINE	MIRb	MIR	chr5MIRb32746525	NonProperStrand	8	chr13	44869608	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.5479
chr14	73372084	73372113	LINE	L1Md_A	L1	chr14L1Md_A73367838	NonProperStrand	7	chr14	73373215	73373304	LINE	L1Md_A	L1	chr14L1Md_A73373053	NonProperStrand	1	1	-inf
mmu-miR-6238	3	20	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	chr12	54696822	54696946	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-12.4128
chr15	78403910	78404002	Low_complexity	GA-rich	Low_complexity	chr15GA-rich78403832	NonProperStrand	2	chr4	129848242	129848301	protein_coding	Tinagl1	intron	ENSMUSG00000028776	NonProperStrand	24	2	-inf
chr17	39847702	39847839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	58794524	58794542	protein_coding	Ano5	intron	ENSMUSG00000055489	NonProperStrand	5	1	-3.2379
chr6	87845473	87845520	protein_coding-noncoding	Copg	utr5	ENSMUSG00000030058	NonProperStrand	26	chr7	64339917	64339954	protein_coding	Gabrg3	intron	ENSMUSG00000055026	NonProperStrand	33	1	-14.9296
chr6	24734480	24734498	LINE	L1Md_F3	L1	chr6L1Md_F324732674	ProperStrand	1	chr5	100034977	100036513	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	119	1	-inf
chr3	99865218	99865308	protein_coding	Spag17	intron	ENSMUSG00000027867	NonProperStrand	6	chr3	99854461	99854561	protein_coding	Spag17	intron	ENSMUSG00000027867	ProperStrand	2	1	-inf
chr4	107673932	107673950	protein_coding	Slc1a7	intron	ENSMUSG00000008932	ProperStrand	6	chr1	89800163	89800248	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-14.2466
chr19	34740047	34740137	LTR	MTB-int	MaLR	chr19MTB-int34739882	NonProperStrand	1	chr19	34740387	34740487	LTR	MTB	MaLR	chr19MTB34740230	NonProperStrand	1	1	-inf
chr18	73416396	73416496	LINE	L1_Mur2	L1	chr18L1_Mur273416201	NonProperStrand	1	chr18	73416683	73416773	Simple_repeat	(GAGAA)n	Simple_repeat	chr18(GAGAA)n73416690	NonProperStrand	1	1	-inf
chr5	143925346	143925446	LTR	ORR1A2	MaLR	chr5ORR1A2143925373	ProperStrand	1	chr5	143925212	143925302	Satellite	ZP3AR	Satellite	chr5ZP3AR143925052	ProperStrand	1	1	-inf
chr16	48001811	48001901	LINE	Lx	L1	chr16Lx48001691	ProperStrand	1	chr16	48001369	48001469	LINE	Lx9	L1	chr16Lx948000908	NonProperStrand	1	1	-inf
chr8	89013386	89028391	protein_coding-noncoding	Abcc12	utr3	ENSMUSG00000036872	ProperStrand	8	chr8	89013299	89028518	protein_coding	Abcc12	utr3	ENSMUSG00000036872	ProperStrand	128	7	-inf
chrX	133923815	133925810	LINE	L1Md_F3	L1	chrXL1Md_F3133919338	ProperStrand	1	chr16	33409836	33409862	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	1	-inf
chr2	19540275	19540292	LINE	L1_Mus3	L1	chr2L1_Mus319539850	ProperStrand	2	chr17	39846583	39846657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr1	100180180	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr17	27630480	27632299	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-7.8113
chr17	39847269	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	82283655	82283674	protein_coding	Irs1	exon	ENSMUSG00000055980	ProperStrand	2	1	-6.5615
chr11	96073030	96073120	LTR	RMER19C	ERVK	chr11RMER19C96072492	ProperStrand	3	chr17	39847060	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-9.8423
chr17	39847243	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	77349128	77349174	protein_coding	Abhd15	intron	ENSMUSG00000000686	ProperStrand	8	1	-3.3803
chr13	21907108	21907182	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr6	49086561	49086645	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	ProperStrand	101	1	-13.1048
chr1	117264685	117264785	LINE	Lx3A	L1	chr1Lx3A117263914	ProperStrand	1	chr1	117264951	117265041	Simple_repeat	(GTTTG)n	Simple_repeat	chr1(GTTTG)n117264955	NonProperStrand	1	1	-inf
chr10	122068817	122068836	LINE	L1Md_A	L1	chr10L1Md_A122068634	NonProperStrand	6	chr10	122064787	122064903	Simple_repeat	(TGAG)n	Simple_repeat	chr10(TGAG)n122064774	NonProperStrand	1	1	-inf
chr10	4356455	4356505	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr9	35016837	35016908	protein_coding-noncoding	Foxred1	utr3	ENSMUSG00000039048	ProperStrand	1	1	-inf
chr7	138884707	138884777	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	chr5	65473521	65473570	protein_coding	Tmem156	intron	ENSMUSG00000037913	ProperStrand	14	1	-11.0996
chr1	178349378	178349478	LINE	L1M5	L1	chr1L1M5178349357	ProperStrand	1	chr1	178349179	178349269	SINE	B3	B2	chr1B3178349106	NonProperStrand	1	1	-inf
chr12	78350926	78351007	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	36903925	36903976	protein_coding	Golgb1	intron	ENSMUSG00000034243	ProperStrand	83	1	-5.2618
chr14	26453257	26453284	protein_coding	Zmiz1	intron	ENSMUSG00000007817	NonProperStrand	61	chr1	72240259	72240320	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-11.3125
chr6	67281702	67281788	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr10	105238371	105238447	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-10.2298
chr9	59671622	59671928	protein_coding	Myo9a	intron	ENSMUSG00000039585	NonProperStrand	10	chr16	31101859	31101875	protein_coding	Acap2	intron	ENSMUSG00000049076	NonProperStrand	7	1	-20.1042
chr6	113055954	113056028	protein_coding-noncoding	Setd5	utr5	ENSMUSG00000034269	ProperStrand	3	chr6	97554882	97554946	protein_coding	Frmd4b	intron	ENSMUSG00000030064	ProperStrand	32	1	-19.1201
chr17	28990645	28990735	LTR	MTEa	MaLR	chr17MTEa28990429	NonProperStrand	1	chr17	28990265	28990365	SINE	PB1D10	Alu	chr17PB1D1028990248	ProperStrand	1	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr4	114986969	114987040	protein_coding	Cyp4a12a	intron	ENSMUSG00000066071	NonProperStrand	5	1	-13.0081
chr3	34882468	34882516	LTR	ORR1A1-int	MaLR	chr3ORR1A1-int34881848	ProperStrand	2	chr3	153289671	153289727	protein_coding	St6galnac3	intron	ENSMUSG00000052544	ProperStrand	282	1	-16.3535
chr5	93033724	93033824	protein_coding	Stbd1	intron	ENSMUSG00000047963	ProperStrand	1	chr5	93007707	93007797	protein_coding	Fam47e	intron	ENSMUSG00000057068	ProperStrand	2	1	-inf
chr18	41209569	41209590	LINE	Lx2B	L1	chr18Lx2B41209323	NonProperStrand	1	chr7	109520165	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-inf
chr4	149120029	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr3	58434567	58434594	protein_coding	Fam194a	intron	ENSMUSG00000070471	NonProperStrand	6	1	-11.3094
chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	27	chr13	97190549	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.6986
chr17	39847665	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	130070604	130070647	LTR	ORR1D2	MaLR	chrXORR1D2130070616	NonProperStrand	1	1	-inf
chr17	39847440	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	10422943	10422964	protein_coding	Vmn2r47	intron	ENSMUSG00000091545	NonProperStrand	2	1	-5.4040
chr10	78063235	78063320	LTR	MTEa	MaLR	chr10MTEa78063231	NonProperStrand	1	chr17	39847477	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	97190593	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr3	19203992	19204020	protein_coding	Pde7a	intron	ENSMUSG00000069094	NonProperStrand	15	1	-7.8902
chr15	6762002	6762072	LTR	RMER6C	ERVK	chr15RMER6C6761984	NonProperStrand	2	chr8	124895320	124895367	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-13.6507
chr7	92683671	92683689	LINE	L1_Mus2	L1	chr7L1_Mus292683269	ProperStrand	1	chr17	39847207	39847259	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39848305	39848360	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	14992695	14992783	protein_coding	Arl5b	intron	ENSMUSG00000017418	NonProperStrand	8	1	-5.1688
chr17	39847763	39847803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	74820312	74820330	protein_coding	Wnt6	intron	ENSMUSG00000033227	NonProperStrand	1	1	-inf
chr17	39848684	39848736	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr13	54564556	54565219	protein_coding	Thoc3	intron	ENSMUSG00000025872	ProperStrand	6	1	-6.0469
chr14	112341931	112342021	LINE	Lx8	L1	chr14Lx8112341726	NonProperStrand	1	chr14	112342407	112342507	LTR	ORR1E	MaLR	chr14ORR1E112342397	ProperStrand	1	1	-inf
chr4	25789905	25789962	LINE	Lx6	L1	chr4Lx625789117	NonProperStrand	1	chr8	70530962	70531029	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	1	-inf
chr17	39846583	39846650	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	74594196	74594277	protein_coding	Rasl11b	exon	ENSMUSG00000049907	ProperStrand	1	1	-inf
chr17	39846583	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	29247695	29247939	protein_coding	Lrfn1	intron	ENSMUSG00000030600	NonProperStrand	1	1	-inf
chr8	3207322	3207427	protein_coding	Insr	intron	ENSMUSG00000005534	ProperStrand	62	chr1	167340267	167340302	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	1	-8.5082
chr2	23162588	23162620	LINE	L1Md_F2	L1	chr2L1Md_F223157662	ProperStrand	1	chr17	39846663	39846717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	73953012	73953375	SINE	B3A	B2	chrXB3A73953190	NonProperStrand	1	chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr6	33622901	33622976	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-6.6243
chr14	115033252	115033342	LINE	Lx2B	L1	chr14Lx2B115033236	NonProperStrand	1	chr14	115033099	115033199	SINE	B2_Mm2	B2	chr14B2_Mm2115032990	ProperStrand	1	1	-inf
chrX	75419128	75419176	LINE	L1Md_F3	L1	chrXL1Md_F375415090	ProperStrand	3	chr9	48175177	48175247	protein_coding	Fam55d	intron	ENSMUSG00000044229	ProperStrand	43	1	-19.2039
chr9	113497768	113497803	SINE	RSINE1	B4	chr9RSINE1113497720	NonProperStrand	1	chr10	18394631	18394707	protein_coding	D10Bwg1379e	intron	ENSMUSG00000019852	NonProperStrand	72	1	-inf
chr2	18370662	18370683	LTR	RMER17B	ERVK	chr2RMER17B18370237	ProperStrand	2	chr16	8784965	8785092	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	1	-16.1197
chrX	74289825	74289841	LINE	Lx9	L1	chrXLx974289148	NonProperStrand	1	chr11	78036366	78036483	protein_coding	Supt6h	intron	ENSMUSG00000002052	NonProperStrand	41	1	-inf
chr17	39846883	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	128794074	128794100	protein_coding	Hpca	intron	ENSMUSG00000028785	ProperStrand	2	1	-5.3533
chr16	38935846	38935912	protein_coding	Igsf11	intron	ENSMUSG00000022790	ProperStrand	9	chr6	53904246	53904266	protein_coding	Cpvl	intron	ENSMUSG00000052955	ProperStrand	3	1	-21.0885
chr9	59662388	59662457	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr5	90241398	90241456	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	2	-9.7337
chr17	39846803	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	4726118	4726208	protein_coding	4930417G10Rik	intron	ENSMUSG00000079177	NonProperStrand	5	1	-3.1907
chr9	44384439	44384495	SINE	B1_Mm	Alu	chr9B1_Mm44384363	NonProperStrand	1	chr8	78081408	78081488	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-inf
chr4	130734169	130734214	LTR	MTC-int	MaLR	chr4MTC-int130733825	ProperStrand	2	chr1	136364891	136364969	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-17.8206
chr7	28897486	28897549	protein_coding	Fcgbp	intron	ENSMUSG00000047730	NonProperStrand	69	chr2	29831384	29831437	protein_coding	Spna2	intron	ENSMUSG00000057738	ProperStrand	19	1	-14.0740
chr7	13277180	13277458	LINE	L1VL2	L1	chr7L1VL213276556	NonProperStrand	5	chr17	39847734	39848078	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-9.2538
chr8	48230483	48230517	LINE	L1M4	L1	chr8L1M448230294	ProperStrand	1	chr8	48236770	48236852	LINE	L1Md_A	L1	chr8L1Md_A48236270	NonProperStrand	1	1	-inf
chr17	39847734	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	30685546	30685651	protein_coding	Mest	intron	ENSMUSG00000051855	NonProperStrand	6	2	-5.2646
chr7	10829718	10829817	LINE	L1_Mus4	L1	chr7L1_Mus410829452	NonProperStrand	1	chr17	39847216	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr6	3201509	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	69392821	69392884	protein_coding	Naf1	intron	ENSMUSG00000014907	NonProperStrand	10	1	-6.3611
chr17	39847444	39847578	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	8153276	8153294	protein_coding	Car8	intron	ENSMUSG00000041261	ProperStrand	2	1	-5.4040
chr11	33471252	33471342	protein_coding	Gabrp	intron	ENSMUSG00000020159	NonProperStrand	3	chr11	33507383	33507483	protein_coding	D130052B06Rik	intron	ENSMUSG00000073052	NonProperStrand	13	1	-inf
chr7	129023345	129023445	protein_coding	Scnn1b	intron	ENSMUSG00000030873	NonProperStrand	2	chr7	129023856	129023946	protein_coding	Cog7	utr3	ENSMUSG00000034951	ProperStrand	1	1	-inf
chr10	79858802	79858990	protein_coding	Mbd3	intron	ENSMUSG00000035478	NonProperStrand	98	chr6	94022955	94023003	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-5.3233
chr17	39847659	39847704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	13261297	13261363	protein_coding	Vmn2r55	intron	ENSMUSG00000091045	NonProperStrand	4	1	-3.7035
chr4	148448637	148448654	protein_coding	Pex14	intron	ENSMUSG00000028975	NonProperStrand	28	chr17	36231284	36231311	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	1	-14.9050
chr11	88646296	88646386	LINE	L1M5	L1	chr11L1M588646303	NonProperStrand	1	chr11	88646499	88646599	SINE	B4	B4	chr11B488646455	ProperStrand	1	1	-inf
chr17	39846726	39846786	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	5059703	5060220	LTR	RMER19B	ERVK	chr7RMER19B5059609	ProperStrand	1	1	-inf
chr12	69373632	69373732	LINE	Lx5	L1	chr12Lx569373638	ProperStrand	4	chr12	69373542	69373632	LTR	ORR1A2	MaLR	chr12ORR1A269373301	ProperStrand	1	1	-inf
chr2	90395135	90395170	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr9	40802617	40802777	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.1828
chr17	35930887	35931234	SINE	B3A	B2	chr17B3A35931100	NonProperStrand	2	chr17	35931160	35931260	SINE	B3A	B2	chr17B3A35931150	NonProperStrand	1	1	-inf
chr8	125430670	125430799	protein_coding-noncoding	Ankrd11	utr3	ENSMUSG00000035569	ProperStrand	2	chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	1	-20.6040
chr1	121066397	121066487	SINE	B3	B2	chr1B3121066375	NonProperStrand	1	chr1	121066553	121066653	SINE	B4A	B4	chr1B4A121066582	NonProperStrand	1	1	-inf
chr5	110403856	110403937	LINE	L1Md_T	L1	chr5L1Md_T110403098	NonProperStrand	9	chr5	110401804	110401847	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110401401	NonProperStrand	3	1	-21.0885
chr7	128454693	128454769	LINE	L1PB4	L1	chr7L1PB4128454492	NonProperStrand	4	chr4	123608792	123608858	protein_coding	Rragc	intron	ENSMUSG00000028646	NonProperStrand	41	1	-18.8469
chr17	39847265	39847337	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	122606365	122606447	SINE	B2_Mm1a	B2	chr6B2_Mm1a122606373	ProperStrand	2	1	-6.5615
chr11	109011656	109011840	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	90395137	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	2	-6.5442
chr2	22744825	22744905	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	34950986	34952076	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	2	-8.9107
chr17	39846526	39846555	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	21391346	21391413	SINE	B1_Mus1	Alu	chr12B1_Mus121391282	ProperStrand	2	1	-5.3533
chr10	88767149	88767180	LINE	L1Md_F2	L1	chr10L1Md_F288765823	ProperStrand	5	chr1	34180094	34180190	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-11.9333
chr14	11585594	11585653	antisense	Gm16542	.	ENSMUSG00000089833	ProperStrand	103	chr1	192875280	192875336	protein_coding	Tatdn3	intron	ENSMUSG00000026632	ProperStrand	5	2	-inf
chr3	96049309	96049381	antisense	RP24-201C14.6	.	ENSMUSG00000093553	ProperStrand	1	chr3	96050801	96050884	protein_coding	Hist2h3c1	exon	ENSMUSG00000070392	NonProperStrand	1	1	-inf
chr4	43263695	43263743	protein_coding	Unc13b	intron	ENSMUSG00000028456	ProperStrand	85	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.8343
chr11	117303893	117303972	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n117303750	ProperStrand	1	chr13	97190580	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr5	146261265	146261338	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr13	97190551	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	5	-7.9559
chr17	39847444	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	120417590	120417701	LTR	ORR1B1	MaLR	chr8ORR1B1120417383	ProperStrand	1	1	-inf
chr1	89013339	89013439	Low_complexity	CT-rich	Low_complexity	chr1CT-rich89013277	NonProperStrand	2	chr1	89013438	89013528	SINE	B2_Mm2	B2	chr1B2_Mm289013424	ProperStrand	2	2	-inf
chr9	109105957	109106279	SINE	B1F	Alu	chr9B1F109105936	ProperStrand	3	chr9	109105655	109105947	SINE	B2_Mm2	B2	chr9B2_Mm2109105557	ProperStrand	3	3	-inf
chr17	39845126	39845195	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr15	76418492	76418580	protein_coding	Adck5	intron	ENSMUSG00000022550	ProperStrand	25	1	-3.8093
chr8	13911988	13912078	protein_coding	Fbxo25	intron	ENSMUSG00000038365	NonProperStrand	2	chr8	14045627	14045728	protein_coding	Erich1	intron	ENSMUSG00000051978	NonProperStrand	2	1	-19.8939
chr7	141451003	141451257	LTR	MT2A	ERVL	chr7MT2A141450778	NonProperStrand	38	chr7	141447987	141451030	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	134	24	-22.8103
chr2	49256770	49256870	LTR	MLT1F	MaLR	chr2MLT1F49256631	ProperStrand	1	chr2	49256940	49257030	LTR	ORR1A2	MaLR	chr2ORR1A249256875	ProperStrand	1	1	-inf
chr2	70741336	70741402	LINE	L1MEc	L1	chr2L1MEc70741304	NonProperStrand	1	chr17	39848099	39848155	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr2	61797438	61800004	LINE	L1Md_T	L1	chr2L1Md_T61797450	ProperStrand	1	chr11	30545873	30545957	protein_coding	Acyp2	intron	ENSMUSG00000060923	ProperStrand	9	1	-inf
chr11	77827923	77829218	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	chr11	74667017	74667173	protein_coding	Sgsm2	intron	ENSMUSG00000038351	NonProperStrand	31	2	-18.0959
chr2	59270341	59270447	LTR	LTR84b	ERVL	chr2LTR84b59270292	ProperStrand	1	chr9	123462079	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	92798556	92798602	protein_coding	Art3	intron	ENSMUSG00000034842	ProperStrand	42	chr5	92793347	92793403	pseudogene	Gm2673	.	ENSMUSG00000082068	ProperStrand	2	2	-inf
chr5	135738920	135738960	SINE	B3	B2	chr5B3135738918	NonProperStrand	2	chr5	135738347	135738377	SINE	B3A	B2	chr5B3A135738201	NonProperStrand	2	2	-inf
chr2	167029647	167031335	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	chr12	110692203	110692276	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-9.8654
chr4	63550071	63550108	LINE	Lx7	L1	chr4Lx763549944	ProperStrand	3	chr17	39847326	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr8	55794542	55794642	lincRNA	Gm15758	exon	ENSMUSG00000089719	ProperStrand	1	chr8	55794271	55794361	protein_coding	Wdr17	intron	ENSMUSG00000039375	NonProperStrand	5	1	-inf
chr17	39846453	39846990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	23745184	23745284	SINE	B1_Mur1	Alu	chr13B1_Mur123745192	NonProperStrand	5	3	-9.1539
chr13	104090146	104090278	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	chr1	91873577	91873609	protein_coding	Asb18	intron	ENSMUSG00000067081	NonProperStrand	2	1	-17.6876
chr19	41918502	41918538	SINE	B4A	B4	chr19B4A41918439	ProperStrand	6	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-13.3877
chr2	129080238	129080300	antisense	Gm14024	.	ENSMUSG00000085485	ProperStrand	18	chr8	124913454	124913506	protein_coding	Zc3h18	intron	ENSMUSG00000017478	NonProperStrand	139	1	-12.7806
chr1	89557981	89558027	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	chr9	56147425	56147496	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-4.5888
chr15	62232295	62232322	Simple_repeat	(GA)n	Simple_repeat	chr15(GA)n62232291	ProperStrand	1	chr16	14269594	14269637	protein_coding	Myh11	intron	ENSMUSG00000018830	ProperStrand	2	1	-inf
chr17	25959873	25960249	lincRNA	Gm17480	intron	ENSMUSG00000091321	NonProperStrand	21	chr17	25960668	25961967	protein_coding	Wdr24	intron	ENSMUSG00000025737	NonProperStrand	22	2	-inf
chr17	39845288	39845310	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr5	147474021	147474095	LTR	RLTR17	ERVK	chr5RLTR17147473500	ProperStrand	2	1	-9.3724
chr10	42508262	42508339	protein_coding	Sec63	intron	ENSMUSG00000019802	ProperStrand	36	chr12	54696895	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-11.4106
chr10	54461951	54462041	LINE	L1_Mus3	L1	chr10L1_Mus354460869	ProperStrand	1	chr10	54462479	54462579	LTR	RMER4B	ERVK	chr10RMER4B54462210	NonProperStrand	1	1	-inf
chr15	59064281	59064384	LTR	MT2B	ERVL	chr15MT2B59064275	ProperStrand	3	chr15	59064146	59064298	LTR	ORR1A3-int	MaLR	chr15ORR1A3-int59064071	ProperStrand	5	3	-inf
chr7	19087985	19088107	LINE	L1Md_F2	L1	chr7L1Md_F219086896	NonProperStrand	2	chr2	121457834	121457863	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	1	-19.2571
chr12	111604825	111604871	SINE	B3A	B2	chr12B3A111604799	NonProperStrand	1	chr18	37910542	37910626	lincRNA	Gm16882	intron	ENSMUSG00000085906	ProperStrand	27	1	-inf
chr18	73643423	73643450	LINE	L1ME2z	L1	chr18L1ME2z73643241	NonProperStrand	1	chr5	144268825	144268936	protein_coding	Rac1	intron	ENSMUSG00000001847	NonProperStrand	14	1	-inf
chr17	39847277	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	178333084	178333594	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n178333547	NonProperStrand	4	1	-4.8204
chr9	65830006	65830022	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	ProperStrand	13	chr7	96405262	96405387	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-12.0152
chrX	42072089	42072111	LTR	MTC-int	MaLR	chrXMTC-int42071976	ProperStrand	1	chr2	119602617	119602714	protein_coding	Rpap1	intron	ENSMUSG00000034032	NonProperStrand	24	1	-inf
chr8	3662090	3662146	LINE	Lx7	L1	chr8Lx73661546	ProperStrand	1	chr9	78479687	78479774	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-inf
chr10	103339290	103339380	LINE	L1_Mur2	L1	chr10L1_Mur2103339046	ProperStrand	1	chr10	103339778	103339878	LINE	L1_Mur2	L1	chr10L1_Mur2103339517	ProperStrand	1	1	-inf
chr15	77786537	77786627	protein_coding-noncoding	Foxred2	utr3	ENSMUSG00000016552	ProperStrand	6	chr15	77785203	77786540	protein_coding	Foxred2	intron	ENSMUSG00000016552	ProperStrand	71	4	-inf
chr16	4636359	4636453	protein_coding	Coro7	intron	ENSMUSG00000039637	ProperStrand	312	chr5	31259399	31259429	protein_coding	Preb	intron	ENSMUSG00000045302	NonProperStrand	2	1	-16.1805
chr16	57772420	57772511	LINE	L1_Mm	L1	chr16L1_Mm57771930	ProperStrand	1	chr12	101327413	101327513	LTR	MTE2a	MaLR	chr12MTE2a101327367	NonProperStrand	1	1	-inf
chr17	39847623	39847688	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	191255896	191255971	LTR	MTE2b-int	MaLR	chr1MTE2b-int191255628	NonProperStrand	1	1	-inf
chr12	78350931	78351021	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr19	43911481	43911581	protein_coding	Abcc2	intron	ENSMUSG00000025194	NonProperStrand	51	1	-6.2165
chr4	101498266	101498310	LINE	L1Md_F2	L1	chr4L1Md_F2101498197	ProperStrand	1	chr17	39846453	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	119277434	119277471	protein_coding-noncoding	Foxj3	utr5	ENSMUSG00000032998	NonProperStrand	7	chr11	79354452	79354534	protein_coding	Nf1	intron	ENSMUSG00000020716	ProperStrand	21	2	-20.2889
chr11	21272756	21272845	lincRNA	Gm12043	exon	ENSMUSG00000087253	ProperStrand	5	chr11	21238594	21238634	protein_coding	Ugp2	intron	ENSMUSG00000001891	NonProperStrand	19	1	-19.0437
chr1	30613534	30613624	LINE	Lx9	L1	chr1Lx930613405	NonProperStrand	1	chr7	47188542	47188642	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	1	-inf
chr7	107220291	107220380	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int107220237	ProperStrand	1	chr7	25218824	25218893	protein_coding	Irgc1	intron	ENSMUSG00000062028	ProperStrand	6	1	-inf
chr13	97190573	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr3	84878398	84878447	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-3.1655
chrX	87238369	87238392	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr13	49598308	49598429	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	1	-8.4797
chr14	60700896	60700996	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr5	140387693	140387783	protein_coding	Elfn1	intron	ENSMUSG00000048988	NonProperStrand	14	1	-12.5494
chr8	73932912	73933012	protein_coding-noncoding	Ankle1	utr5	ENSMUSG00000046295	NonProperStrand	1	chr8	73933404	73933494	protein_coding	Ankle1	utr3	ENSMUSG00000046295	NonProperStrand	1	1	-inf
chr17	39847619	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	48396925	48398074	protein_coding	Trem3	intron	ENSMUSG00000041754	NonProperStrand	20	3	-3.1878
chr4	130728914	130728954	LTR	MTD	MaLR	chr4MTD130728592	ProperStrand	1	chr8	125446042	125446149	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-inf
chr12	66938545	66938645	LINE	Lx8	L1	chr12Lx866937509	NonProperStrand	1	chr12	66938850	66938940	LINE	Lx8	L1	chr12Lx866938746	NonProperStrand	1	1	-inf
chr17	39846353	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	34163054	34163127	protein_coding	Bphl	intron	ENSMUSG00000038286	ProperStrand	5	1	-3.1907
chr6	87843695	87847959	protein_coding-noncoding	Copg	utr5	ENSMUSG00000030058	NonProperStrand	26	chr6	87843875	87848172	protein_coding	Copg	exon	ENSMUSG00000030058	NonProperStrand	31	3	-inf
chr2	158498476	158498587	protein_coding	Ppp1r16b	intron	ENSMUSG00000037754	ProperStrand	9	chr17	56005875	56005907	protein_coding	Zfp119a	exon	ENSMUSG00000057835	ProperStrand	21	1	-18.0293
chr2	22744853	22744900	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr3	88118058	88118166	protein_coding-noncoding	Cct3	utr5	ENSMUSG00000001416	ProperStrand	1	1	-inf
chrX	87238359	87238406	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr9	110281284	110281341	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	8	-19.6294
chr17	50420127	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr18	77484253	77484305	protein_coding	St8sia5	intron	ENSMUSG00000025425	NonProperStrand	23	1	-11.8861
chr2	27472201	27472227	LINE	L1M4c	L1	chr2L1M4c27472180	NonProperStrand	1	chr2	27472005	27472041	LTR	MTD	MaLR	chr2MTD27471896	ProperStrand	1	1	-inf
chr12	77248857	77248951	protein_coding	Esr2	intron	ENSMUSG00000021055	NonProperStrand	16	chr9	123462037	123462077	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr6	5162618	5162713	LTR	ORR1A2	MaLR	chr6ORR1A25162630	ProperStrand	1	chr7	19696436	19696484	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-inf
chr9	88843129	88843204	lincRNA	Gm17683	intron	ENSMUSG00000091564	NonProperStrand	40	chr9	78480094	78480242	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	2	-13.2658
chr17	39847243	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	61709209	61709330	protein_coding	Akap10	intron	ENSMUSG00000047804	NonProperStrand	9	1	-3.1539
chr17	39847519	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	17222211	17222241	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	11	2	-3.4077
chr17	39846718	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	41070013	41070113	lincRNA	A730081D07Rik	intron	ENSMUSG00000086693	ProperStrand	4	1	-3.6552
chr17	35973226	35973366	protein_coding	Tubb5	utr5	ENSMUSG00000001525	ProperStrand	7	chr7	98645205	98646461	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	3	-inf
chr18	46985026	46985116	LTR	ORR1B1-int	MaLR	chr18ORR1B1-int46983705	ProperStrand	1	chr18	46985145	46985245	LTR	ORR1B1	MaLR	chr18ORR1B146985110	ProperStrand	1	1	-inf
chr17	39847173	39847199	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	38658631	38658647	protein_coding	Arhgap31	intron	ENSMUSG00000022799	ProperStrand	4	1	-4.8204
chr8	72257280	72257363	LTR	RLTR14-int	ERV1	chr8RLTR14-int72257161	ProperStrand	1	chr8	72256176	72256781	LTR	RMER19C	ERVK	chr8RMER19C72256480	ProperStrand	1	1	-inf
chr2	56626061	56626081	LINE	L1Md_F3	L1	chr2L1Md_F356625316	NonProperStrand	1	chr17	39847244	39847265	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	18028818	18028878	LINE	Lx4B	L1	chr12Lx4B18027470	NonProperStrand	2	chr17	39847160	39847198	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr8	70132631	70133173	LTR	MER57D	ERV1	chr8MER57D70133062	ProperStrand	3	chr8	70131952	70132620	LTR	MTE2a	MaLR	chr8MTE2a70131916	NonProperStrand	3	3	-inf
chrX	38294661	38294751	LINE	L1M2	L1	chrXL1M238294561	NonProperStrand	1	chrX	38294939	38295039	LINE	L1Md_A	L1	chrXL1Md_A38294883	NonProperStrand	1	1	-inf
chr8	106173721	106173821	LINE	L1MA8	L1	chr8L1MA8106173263	NonProperStrand	1	chr17	39846734	39846824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	97941228	97941328	LINE	MusHAL1	L1	chr2MusHAL197940988	NonProperStrand	1	chr2	98684068	98684158	LTR	RLTR12A	ERVK	chr2RLTR12A98683635	ProperStrand	1	1	-inf
chr19	5800509	5800539	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	87166602	87166677	protein_coding	Ppm1e	intron	ENSMUSG00000046442	NonProperStrand	32	1	-5.6610
chr9	21266945	21266971	protein_coding	Dnm2	intron	ENSMUSG00000033335	ProperStrand	26	chr18	45684757	45684773	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	1	-14.6453
chr1	39452327	39452370	protein_coding	Tbc1d8	intron	ENSMUSG00000003134	ProperStrand	68	chr11	117723206	117723223	protein_coding	Cldn27	intron	ENSMUSG00000070330	ProperStrand	37	1	-12.7476
chrX	75394617	75394707	LINE	Lx7	L1	chrXLx775394593	NonProperStrand	1	chrX	75394434	75394534	LINE	Lx9	L1	chrXLx975394290	NonProperStrand	1	1	-inf
chr5	140019652	140019748	protein_coding	Uncx	utr5	ENSMUSG00000029546	NonProperStrand	332	chr11	33393064	33393123	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-4.1117
chr17	39847170	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	104105874	104105890	protein_coding	Btbd7	intron	ENSMUSG00000041702	NonProperStrand	4	1	-4.8204
chr7	120073143	120073233	SINE	ID_B1	B4	chr7ID_B1120073051	NonProperStrand	1	chr7	120072872	120072972	SINE	PB1D9	Alu	chr7PB1D9120072859	ProperStrand	1	1	-inf
chr17	39847970	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	71739342	71739450	protein_coding	Pdk1	utr3	ENSMUSG00000006494	NonProperStrand	1	1	-inf
chr7	27391507	27391542	LINE	L1Md_F	L1	chr7L1Md_F27390916	ProperStrand	1	chr7	27394261	27396192	protein_coding	Vmn1r185	utr3	ENSMUSG00000091924	ProperStrand	2	1	-inf
chr16	87084103	87084203	LTR	LTR53	ERVL	chr16LTR5387083904	ProperStrand	1	chr16	87084323	87084413	LTR	MTEa	MaLR	chr16MTEa87084269	ProperStrand	1	1	-inf
chrX	74066125	74066215	LTR	MLT1C	MaLR	chrXMLT1C74066129	NonProperStrand	1	chrX	74066026	74066126	LTR	MTE2b	MaLR	chrXMTE2b74065863	NonProperStrand	2	1	-inf
chr3	153601402	153601502	protein_coding-noncoding	Acadm	utr3	ENSMUSG00000062908	ProperStrand	1	chr3	153601522	153601613	protein_coding	Acadm	exon	ENSMUSG00000062908	ProperStrand	41	1	-inf
chr4	121166858	121166958	LINE	L1_Mm	L1	chr4L1_Mm121166070	ProperStrand	2	chr2	177903286	177903376	protein_coding	Phactr3	intron	ENSMUSG00000027525	NonProperStrand	33	2	-inf
chr6	44816724	44816814	LINE	L1_Mur2	L1	chr6L1_Mur244816056	NonProperStrand	1	chr6	44483415	44483515	LINE	L1_Mus2	L1	chr6L1_Mus244480913	ProperStrand	1	1	-inf
chr17	35140488	35140883	protein_coding	Vars	intron	ENSMUSG00000007029	ProperStrand	65	chr4	132409471	132409544	protein_coding	Stx12	utr3	ENSMUSG00000028879	ProperStrand	11	1	-15.3427
chr9	94843284	94843312	protein_coding	Slc9a9	intron	ENSMUSG00000031129	NonProperStrand	17	chr4	141507352	141507466	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	1	-13.6397
chrX	79636730	79636790	LINE	L1Md_A	L1	chrXL1Md_A79634541	ProperStrand	1	chr17	39847645	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	58094702	58094802	lincRNA	Gm15943	intron	ENSMUSG00000086801	NonProperStrand	53	chr11	96796910	96797000	protein_coding	Prr15l	utr3	ENSMUSG00000047040	ProperStrand	27	1	-13.8876
chr2	177830023	177830144	LTR	RLTR20A	ERVK	chr2RLTR20A177829941	ProperStrand	2	chr3	54607617	54607638	protein_coding	Rfxap	utr3	ENSMUSG00000036615	ProperStrand	2	1	-19.8939
chr17	39847215	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	21703138	21703222	SINE	ID_B1	B4	chr9ID_B121703039	ProperStrand	5	1	-4.3348
chr17	39848148	39848180	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	96184022	96184044	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n96183511	NonProperStrand	3	3	-inf
chr6	124741225	124741280	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr5	36540107	36540152	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-12.9519
chr6	3201474	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	1	-3.8303
chr7	111049651	111049755	LTR	MERVL_2A-int	ERVL	chr7MERVL_2A-int111048686	NonProperStrand	1	chr1	163973841	163973893	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	1	-inf
chr5	137375411	137375496	SINE	B1_Mus2	Alu	chr5B1_Mus2137375411	ProperStrand	2	chr9	118674951	118675012	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-inf
chr15	64177652	64177762	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr19	55423343	55423374	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	1	-5.6546
chr14	31171811	31171828	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr7	133047472	133047547	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.0501
chr6	122319957	122320231	LINE	L1M5	L1	chr6L1M5122319973	NonProperStrand	13	chr6	122319518	122319970	SINE	B2_Mm1a	B2	chr6B2_Mm1a122319784	ProperStrand	17	11	-inf
chr9	123461931	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr16	17175633	17182219	protein_coding	Ube2l3	intron	ENSMUSG00000038965	ProperStrand	43	2	-3.2439
chr3	116272833	116272851	protein_coding	Lrrc39	intron	ENSMUSG00000027961	NonProperStrand	1	chr4	135868189	135868219	protein_coding	Hnrnpr	intron	ENSMUSG00000066037	ProperStrand	3	1	-inf
chr18	67427375	67427465	LTR	RLTR13C2	ERVK	chr18RLTR13C267427163	ProperStrand	3	chr14	66922987	66923087	protein_coding	Trim35	exon	ENSMUSG00000022043	ProperStrand	16	3	-inf
chr18	68263544	68263595	protein_coding	D18Ertd653e	intron	ENSMUSG00000024544	NonProperStrand	35	chr2	5379255	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.5960
chr2	90894695	90894795	protein_coding-noncoding	Psmc3	utr5	ENSMUSG00000002102	NonProperStrand	1	chr2	90894897	90894987	protein_coding	Psmc3	intron	ENSMUSG00000002102	NonProperStrand	3	1	-inf
chr9	64445609	64445685	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	chr18	60777849	60778460	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	1	-8.8669
chr14	60740285	60740328	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr15	53641533	53641648	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-5.9398
chr13	90286112	90286202	LINE	L1_Rod	L1	chr13L1_Rod90286118	ProperStrand	1	chr13	90285754	90285854	LINE	Lx8	L1	chr13Lx890285680	ProperStrand	1	1	-inf
chr2	77904032	77909497	lincRNA	4930440I19Rik	intron	ENSMUSG00000085431	NonProperStrand	28	chr9	123461991	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.3787
chrX	142661766	142661856	LINE	Lx3C	L1	chrXLx3C142660741	ProperStrand	1	chrX	142662089	142662189	LINE	Lx8	L1	chrXLx8142662057	ProperStrand	1	1	-inf
chr10	79549372	79549392	protein_coding	Sbno2	intron	ENSMUSG00000035673	ProperStrand	55	chr15	82204218	82204246	protein_coding	Cyp2d22	exon	ENSMUSG00000061740	NonProperStrand	48	1	-12.6480
chr9	123461931	123461950	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	126983684	126983756	protein_coding	2610020H08Rik	intron	ENSMUSG00000030924	ProperStrand	15	1	-3.5950
chr15	36598307	36599023	DNA	URR1B	MER1_type	chr15URR1B36598649	ProperStrand	3	chr17	39848124	39848154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-7.3534
chr4	117652614	117652711	antisense	9530034E10Rik	.	ENSMUSG00000086554	ProperStrand	92	chr18	42244875	42245951	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	NonProperStrand	45	1	-11.7433
chr17	39846003	39846048	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr4	69892861	69892883	protein_coding	Cdk5rap2	intron	ENSMUSG00000039298	ProperStrand	5	1	-6.7797
chr8	43138701	43138791	LINE	L1_Mur3	L1	chr8L1_Mur343138724	ProperStrand	1	chr8	43138593	43138693	LINE	L1_Mus3	L1	chr8L1_Mus343137809	NonProperStrand	5	1	-inf
chr2	124662131	124662149	LINE	L1_Mur2	L1	chr2L1_Mur2124661599	ProperStrand	5	chr17	39847406	39847428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr2	157013792	157013826	protein_coding	Rbl1	intron	ENSMUSG00000027641	ProperStrand	17	chr6	49078725	49078798	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	NonProperStrand	23	1	-16.5187
chr11	59728240	59728301	LINE	Lx7	L1	chr11Lx759728030	ProperStrand	1	chr11	59728713	59728808	LTR	RMER19B	ERVK	chr11RMER19B59728707	NonProperStrand	1	1	-inf
chr18	54699168	54699301	Simple_repeat	(TGGA)n	Simple_repeat	chr18(TGGA)n54699160	NonProperStrand	11	chr2	5379251	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-12.8016
chr15	62089178	62089278	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr5	100405484	100405534	protein_coding	Hnrnpd	intron	ENSMUSG00000000568	ProperStrand	21	1	-8.3235
chr17	39843374	39843474	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr10	79711714	79711804	tRNA	tRNA961-PheGAA	.	397304	NonProperStrand	1	1	-inf
chr3	75621451	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr10	12922605	12922634	Low_complexity	AT_rich	Low_complexity	chr10AT_rich12922602	NonProperStrand	1	1	-inf
chr2	155990720	155990810	protein_coding-noncoding	Rbm39	utr3	ENSMUSG00000027620	NonProperStrand	2	chr2	155990865	155990965	protein_coding	Rbm39	intron	ENSMUSG00000027620	NonProperStrand	38	2	-inf
chr5	9791755	9791855	LINE	L1VL4	L1	chr5L1VL49791085	NonProperStrand	1	chr5	9791936	9792026	LINE	L1_Mur1	L1	chr5L1_Mur19791836	NonProperStrand	1	1	-inf
chr17	39843661	39843679	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	88262196	88262215	protein_coding	Itfg1	intron	ENSMUSG00000031703	ProperStrand	45	1	-3.0729
chr7	141577262	141577317	protein_coding-noncoding	D7Ertd443e	utr3	ENSMUSG00000030994	NonProperStrand	1	chr7	141574121	141574186	protein_coding	D7Ertd443e	intron	ENSMUSG00000030994	NonProperStrand	96	1	-inf
chr9	62117057	62117142	SINE	B2_Mm2	B2	chr9B2_Mm262117056	ProperStrand	1	chr17	39843403	39843439	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr5	7835500	7835600	LTR	MTD-int	MaLR	chr5MTD-int7834904	ProperStrand	1	chr5	7835842	7835932	LTR	MTD-int	MaLR	chr5MTD-int7835778	ProperStrand	1	1	-inf
chr6	94252994	94253077	DNA	URR1B	MER1_type	chr6URR1B94252932	NonProperStrand	2	chr17	39848486	39848558	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-8.7208
chr7	16590952	16591052	SINE	B1_Mus2	Alu	chr7B1_Mus216590934	NonProperStrand	1	chr7	16591074	16591164	Simple_repeat	(GGAA)n	Simple_repeat	chr7(GGAA)n16591076	NonProperStrand	1	1	-inf
chr4	45007099	45007189	protein_coding	Zbtb5	exon	ENSMUSG00000049657	ProperStrand	8	chr5	43911870	43911970	protein_coding	C1qtnf7	intron	ENSMUSG00000061535	ProperStrand	6	2	-inf
chr4	155465754	155465844	LTR	ORR1A1	MaLR	chr4ORR1A1155465477	ProperStrand	1	chr4	155465847	155465947	SINE	B1_Mus2	Alu	chr4B1_Mus2155465857	ProperStrand	1	1	-inf
chr1	122357166	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr13	97190552	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	4	-8.3403
chr7	65304877	65304977	LINE	L1M3	L1	chr7L1M365304754	ProperStrand	3	chr7	65304974	65305064	SINE	B4A	B4	chr7B4A65304959	NonProperStrand	3	3	-inf
chr17	39848690	39848744	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	87378176	87378196	LINE	L1MC1	L1	chr4L1MC187377994	ProperStrand	1	1	-inf
chrX	93375685	93375775	DNA	MamRep1879	hAT?	chrXMamRep187993375631	ProperStrand	1	chrX	93376056	93376156	LINE	Lx8	L1	chrXLx893376036	ProperStrand	1	1	-inf
chr5	146261024	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	65811397	65811498	protein_coding	Tmem232	intron	ENSMUSG00000045036	NonProperStrand	58	1	-5.1285
chr1	63256973	63256991	protein_coding	Gpr1	intron	ENSMUSG00000046856	NonProperStrand	66	chr12	109635381	109635409	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-7.6018
chr9	106431290	106431380	Other	RMER1A	Other	chr9RMER1A106431168	ProperStrand	15	chr1	43189597	43189697	protein_coding	Fhl2	intron	ENSMUSG00000008136	NonProperStrand	2	1	-22.6089
chr10	121435021	121435106	protein_coding	Srgap1	intron	ENSMUSG00000020121	ProperStrand	69	chr12	101082872	101082911	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	ProperStrand	245	1	-8.9229
chr6	148172154	148172170	SINE	ID_B1	B4	chr6ID_B1148172158	NonProperStrand	1	chr8	25165605	25167364	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-inf
chr12	59040423	59040479	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr9	120950613	120950679	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-7.1509
chr12	19388094	19388194	SINE	B3	B2	chr12B319388035	ProperStrand	1	chr12	23010054	23010144	lincRNA	2410018L13Rik	intron	ENSMUSG00000073164	NonProperStrand	9	1	-inf
chr10	81305701	81305801	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int81305704	NonProperStrand	1	chr10	81305197	81305707	LTR	RLTR20D	ERVK	chr10RLTR20D81305132	ProperStrand	1	1	-inf
chr12	67667892	67667982	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chrX	81100043	81100143	protein_coding	Dmd	intron	ENSMUSG00000045103	ProperStrand	47	1	-11.9364
chr16	33062915	33076517	protein_coding	Lmln	intron	ENSMUSG00000022802	ProperStrand	22	chr9	123461957	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-5.0561
chrX	103545980	103546070	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	NonProperStrand	3	chr13	13596477	13596579	protein_coding	Nid1	intron	ENSMUSG00000005397	ProperStrand	1	1	-inf
chr17	35834015	35834040	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr2	29685328	29685438	protein_coding	Urm1	intron	ENSMUSG00000069020	ProperStrand	66	1	-9.1207
chr19	10539722	10540714	SINE	B1_Mur1	Alu	chr19B1_Mur110539733	NonProperStrand	1	chr19	10539636	10539726	SINE	B3	B2	chr19B310539523	NonProperStrand	1	1	-inf
chr17	71209608	71209708	antisense	RP23-85E24.1	.	ENSMUSG00000093514	NonProperStrand	1	chr18	5104369	5104459	protein_coding	Svil	intron	ENSMUSG00000024236	NonProperStrand	9	1	-inf
chr16	89996373	89996437	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr6	134040753	134040824	protein_coding	Etv6	intron	ENSMUSG00000030199	ProperStrand	187	1	-4.1157
chr18	31862447	31862496	protein_coding	Sap130	intron	ENSMUSG00000024260	ProperStrand	80	chr5	140768543	140768634	protein_coding	Mad1l1	intron	ENSMUSG00000029554	ProperStrand	144	1	-9.6874
chr12	28794825	28794877	LINE	L1_Mur2	L1	chr12L1_Mur228792492	NonProperStrand	2	chr1	84793720	84793782	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	1	-18.1346
chr14	116966416	116966506	LINE	L1MC	L1	chr14L1MC116966290	ProperStrand	2	chr14	116966572	116966672	LINE	L1MC	L1	chr14L1MC116966550	ProperStrand	2	2	-inf
chr17	39847264	39847309	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	73272626	73272737	protein_coding-noncoding	Pde4c	utr5	ENSMUSG00000031842	NonProperStrand	3	1	-5.4882
chr3	53471531	53471621	LINE	Lx6	L1	chr3Lx653471342	NonProperStrand	7	chr3	53471660	53471760	LINE	Lx6	L1	chr3Lx653471602	NonProperStrand	7	7	-inf
chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	62327202	62329493	protein_coding-noncoding	Pigl	utr5	ENSMUSG00000014245	NonProperStrand	6	2	-5.1926
chr9	83589839	83589939	LTR	RMER10B	ERVL	chr9RMER10B83589758	NonProperStrand	1	chr9	83589635	83589725	SINE	B3A	B2	chr9B3A83589596	NonProperStrand	1	1	-inf
chr16	61601610	61601710	LINE	L1_Mm	L1	chr16L1_Mm61601580	ProperStrand	1	chr16	61601252	61601342	LINE	L1_Mur2	L1	chr16L1_Mur261601048	NonProperStrand	1	1	-inf
chr17	39847319	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	108430617	108430722	SINE	B1_Mus2	Alu	chr5B1_Mus2108430555	NonProperStrand	1	1	-inf
chr17	39848182	39848211	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	93421851	93421867	LTR	MTE2a	MaLR	chr2MTE2a93421498	ProperStrand	6	1	-5.7734
chr2	168203644	168203702	LTR	ORR1A4-int	MaLR	chr2ORR1A4-int168203571	ProperStrand	1	chr14	30860136	30860200	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	1	-inf
chr12	84465716	84465797	LINE	L1MEf	L1	chr12L1MEf84465626	ProperStrand	3	chr17	39846456	39846529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr8	78607103	78607163	LINE	L1_Mus4	L1	chr8L1_Mus478604780	NonProperStrand	2	chr3	138901255	138901307	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	61	1	-19.2245
chr3	133466831	133466921	LINE	L1Md_F2	L1	chr3L1Md_F2133466558	NonProperStrand	5	chr9	123461878	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	43662023	43662102	Low_complexity	CT-rich	Low_complexity	chr17CT-rich43662043	NonProperStrand	1	1	-inf
chr2	119112676	119112749	SINE	B1_Mus1	Alu	chr2B1_Mus1119112607	NonProperStrand	4	chr2	119118734	119121443	protein_coding	Vps18	intron	ENSMUSG00000034216	ProperStrand	12	1	-22.2547
chr5	34812898	34812934	protein_coding	Fam193a	intron	ENSMUSG00000037210	ProperStrand	38	chr1	163954079	163954180	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	2	-22.3262
chr8	8667915	8667944	protein_coding	Arglu1	intron	ENSMUSG00000040459	ProperStrand	44	chr11	22081998	22082127	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-11.5619
chr9	123462015	123462105	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	8423082	8423182	protein_coding	Slc25a40	intron	ENSMUSG00000054099	ProperStrand	50	3	-4.4868
chr8	123028017	123028065	protein_coding	Gse1	intron	ENSMUSG00000031822	NonProperStrand	68	chr13	35847277	35847341	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-8.2478
chr8	69976154	69976254	LTR	RLTR12B	ERVK	chr8RLTR12B69976179	NonProperStrand	1	chr8	69976318	69976408	LTR	RLTR13B2	ERVK	chr8RLTR13B269976254	NonProperStrand	2	1	-inf
chr13	44869574	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	4	-6.8484
chr4	49501410	49501468	LINE	L1Md_T	L1	chr4L1Md_T49501405	NonProperStrand	1	chr1	13137477	13137548	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	1	-inf
chr11	97187714	97187795	protein_coding	Mrpl45	intron	ENSMUSG00000018882	NonProperStrand	37	chr2	157094927	157094965	protein_coding	4922505G16Rik	intron	ENSMUSG00000074627	ProperStrand	29	1	-14.4733
chr17	39846629	39846701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	80372881	80372957	protein_coding	Enthd1	intron	ENSMUSG00000050439	NonProperStrand	3	1	-4.3017
chr17	39848031	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	13660433	13660462	protein_coding	Xkr9	intron	ENSMUSG00000067813	NonProperStrand	2	1	-5.4040
chr7	118110008	118114859	protein_coding	Mrvi1	intron	ENSMUSG00000005611	ProperStrand	87	chr2	5379299	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.8454
chr2	80632783	80632883	LINE	L1M5	L1	chr2L1M580632800	ProperStrand	2	chr2	80632601	80632691	LTR	MLT1H	MaLR	chr2MLT1H80632617	NonProperStrand	3	2	-inf
chr10	18575080	18575127	protein_coding	Perp	intron	ENSMUSG00000019851	ProperStrand	18	chr16	16555568	16555659	protein_coding	Fgd4	intron	ENSMUSG00000022788	ProperStrand	40	1	-15.2959
chr8	35466384	35466474	LTR	MLT1A0	MaLR	chr8MLT1A035466250	NonProperStrand	1	chr8	34984439	34984539	protein_coding	Rbpms	intron	ENSMUSG00000031586	ProperStrand	74	1	-inf
chr11	107012901	107012938	SINE	B1_Mm	Alu	chr11B1_Mm107012792	NonProperStrand	7	chr4	56762765	56762874	protein_coding	Ikbkap	utr3	ENSMUSG00000028431	ProperStrand	109	1	-15.2528
chr1	89698503	89698576	SINE	B3	B2	chr1B389698479	ProperStrand	6	chr1	89714877	89714960	protein_coding	Sag	intron	ENSMUSG00000056055	ProperStrand	125	1	-15.3282
chr13	21200224	21200245	LTR	RMER13A	ERVK	chr13RMER13A21199786	ProperStrand	5	chr19	12790284	12795071	antisense	Gm15962	.	ENSMUSG00000084981	ProperStrand	25	1	-19.3499
chr18	57388725	57388804	protein_coding	Megf10	intron	ENSMUSG00000024593	ProperStrand	45	chr17	56714002	56714045	protein_coding	Safb2	intron	ENSMUSG00000042625	ProperStrand	14	1	-15.5552
chr15	83100910	83100978	LTR	MMVL30-int	ERV1	chr15MMVL30-int83099913	ProperStrand	1	chrX	93529406	93529444	protein_coding	Hsf3	intron	ENSMUSG00000045802	ProperStrand	120	1	-inf
chrX	98888582	98888683	LTR	RMER16	ERVK	chrXRMER1698888476	ProperStrand	2	chrX	98888385	98888431	Other	RMER1C	Other	chrXRMER1C98888125	ProperStrand	2	2	-inf
chr12	81056758	81056822	LTR	MTC	MaLR	chr12MTC81056469	NonProperStrand	1	chr2	158639320	158639374	protein_coding	Dhx35	intron	ENSMUSG00000027655	ProperStrand	32	1	-inf
chr9	34060446	34060536	LINE	L1MA9	L1	chr9L1MA934060078	NonProperStrand	1	chr9	34061097	34061197	LINE	Lx9	L1	chr9Lx934060819	NonProperStrand	1	1	-inf
chr12	108213024	108213047	LTR	MTE2b	MaLR	chr12MTE2b108212702	NonProperStrand	4	chr8	13604822	13604945	protein_coding	Rasa3	intron	ENSMUSG00000031453	ProperStrand	25	1	-23.5101
chr5	145257434	145257487	LINE	L1ME1	L1	chr5L1ME1145257245	NonProperStrand	1	chr5	145257883	145257983	SINE	ID	ID	chr5ID145257900	NonProperStrand	1	1	-inf
chr3	89145267	89145285	lincRNA	4731419I09Rik	intron	ENSMUSG00000091513	ProperStrand	2	chr11	107414314	107414428	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	1	-17.0462
chr4	114970447	114970547	LINE	L1Md_F2	L1	chr4L1Md_F2114970327	ProperStrand	3	chr4	114970087	114970177	LTR	ORR1D2	MaLR	chr4ORR1D2114970051	ProperStrand	3	3	-inf
chr4	137769069	137769147	SINE	B1_Mur2	Alu	chr4B1_Mur2137769066	NonProperStrand	1	chr4	104533135	104533190	protein_coding	C8a	intron	ENSMUSG00000035031	NonProperStrand	68	1	-inf
chr4	119289314	119289403	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	chrX	39261518	39261563	protein_coding	Thoc2	intron	ENSMUSG00000037475	NonProperStrand	8	1	-14.7607
chr1	13371540	13371630	SINE	B1_Mur4	Alu	chr1B1_Mur413371510	NonProperStrand	1	chr1	13371379	13371479	SINE	B3A	B2	chr1B3A13371343	NonProperStrand	1	1	-inf
chr5	120128246	120130742	protein_coding	Tbx3	intron	ENSMUSG00000018604	ProperStrand	33	chr9	123461988	123462143	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.9328
chr11	43570026	43570126	SINE	B1F2	Alu	chr11B1F243570028	NonProperStrand	3	chr11	43569931	43570021	Simple_repeat	(TTCC)n	Simple_repeat	chr11(TTCC)n43569891	ProperStrand	4	3	-inf
chr15	75795572	75795667	LTR	RMER17C	ERVK	chr15RMER17C75795432	ProperStrand	5	chr17	39847092	39847153	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr7	85537212	85537302	protein_coding	Ntrk3	intron	ENSMUSG00000059146	ProperStrand	6	chr2	163073536	163073636	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-13.1465
chr6	3201509	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	4296898	4296951	protein_coding	Elavl1	intron	ENSMUSG00000040028	ProperStrand	23	1	-4.6887
chr5	142544357	142544392	protein_coding	Sdk1	intron	ENSMUSG00000039683	NonProperStrand	86	chr16	20681221	20681439	protein_coding	Eif4g1	utr5	ENSMUSG00000045983	ProperStrand	123	1	-9.8578
chr1	156866666	156866762	LTR	MTE2b	MaLR	chr1MTE2b156866496	ProperStrand	1	chr17	45589816	45589983	protein_coding	Spats1	intron	ENSMUSG00000023935	ProperStrand	92	1	-inf
chr12	8257283	8257413	protein_coding	1110057K04Rik	intron	ENSMUSG00000037669	ProperStrand	64	chr2	5379310	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.4248
chr10	59763740	59763813	protein_coding	Psap	intron	ENSMUSG00000004207	ProperStrand	8	chr10	59765749	59765829	protein_coding	Cdh23	utr3	ENSMUSG00000012819	NonProperStrand	234	1	-13.4341
chr17	39847803	39847842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	57946770	57946817	Simple_repeat	(GGA)n	Simple_repeat	chr18(GGA)n57946763	ProperStrand	1	1	-inf
chr2	4990184	4990236	LTR	RLTR41	ERV1	chr2RLTR414989999	NonProperStrand	1	chr2	4984251	4984351	protein_coding	Optn	intron	ENSMUSG00000026672	ProperStrand	4	1	-inf
chr17	39847954	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	4644127	4644244	protein_coding	Cabp7	intron	ENSMUSG00000009075	NonProperStrand	20	4	-4.7129
chr3	96269698	96269733	LTR	MT2A	ERVL	chr3MT2A96269392	ProperStrand	5	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-13.7932
chr18	33930914	33931002	LINE	Lx4A	L1	chr18Lx4A33930673	NonProperStrand	1	chr18	33932387	33932458	LINE	Lx5	L1	chr18Lx533931424	NonProperStrand	1	1	-inf
chr10	127281438	127281538	protein_coding-noncoding	Rdh16	utr3	ENSMUSG00000069456	ProperStrand	8	chr10	127280185	127280275	pseudogene	Rdh18-ps	.	ENSMUSG00000054031	ProperStrand	41	4	-inf
chr10	79892034	79892051	protein_coding	Tcf3	intron	ENSMUSG00000020167	NonProperStrand	6	chr4	33502542	33502558	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	100	1	-15.7708
chr19	5520378	5520478	SINE	B4	B4	chr19B45520360	ProperStrand	1	chr19	5520657	5520747	SINE	ID_B1	B4	chr19ID_B15520654	NonProperStrand	1	1	-inf
chr15	100756055	100756078	DNA	RCHARR1	MER1_type	chr15RCHARR1100755915	ProperStrand	1	chr8	13913416	13913463	protein_coding	Fbxo25	intron	ENSMUSG00000038365	ProperStrand	46	1	-inf
chr17	64004496	64004564	LINE	L1_Mur3	L1	chr17L1_Mur364004479	NonProperStrand	1	chr17	39847742	39847759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	153625590	153625680	LINE	Lx9	L1	chr3Lx9153625576	NonProperStrand	5	chr3	153625409	153625509	SINE	B1_Mus1	Alu	chr3B1_Mus1153625391	ProperStrand	4	4	-inf
chr7	46854014	46854075	LTR	MTC	MaLR	chr7MTC46853906	NonProperStrand	44	chr7	46855373	46855441	LTR	MTD	MaLR	chr7MTD46855310	ProperStrand	7	1	-17.0655
chr1	143686645	143686683	LINE	L1_Mus2	L1	chr1L1_Mus2143684226	NonProperStrand	1	chr1	143688928	143689026	LINE	L1_Mus2	L1	chr1L1_Mus2143687270	NonProperStrand	2	1	-inf
chr2	5379234	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr19	22851993	22852015	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	36	1	-5.5405
chr5	98552868	98552958	LINE	L1_Mus1	L1	chr5L1_Mus198552773	ProperStrand	1	chr5	98552588	98552688	SINE	B1_Mus1	Alu	chr5B1_Mus198552594	NonProperStrand	1	1	-inf
chr3	138756616	138756739	LINE	Lx8	L1	chr3Lx8138754627	ProperStrand	6	chr3	138757104	138757129	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n138757101	ProperStrand	1	1	-inf
chr10	77995303	77995322	LINE	L1_Mus1	L1	chr10L1_Mus177994833	NonProperStrand	17	chr10	77995360	77996339	LTR	RLTR23	ERV1	chr10RLTR2377996220	NonProperStrand	1	1	-inf
chr16	17638565	17639287	protein_coding-noncoding	Smpd4	utr5	ENSMUSG00000005899	ProperStrand	3	chr16	17639314	17639796	protein_coding	Smpd4	intron	ENSMUSG00000005899	ProperStrand	18	1	-23.1775
chr7	80754355	80754444	SINE	B1_Mus1	Alu	chr7B1_Mus180754365	NonProperStrand	3	chr7	80754249	80754349	SINE	B3	B2	chr7B380754200	ProperStrand	5	3	-inf
chr2	181444956	181444994	SINE	B1_Mur2	Alu	chr2B1_Mur2181444964	ProperStrand	1	chr2	181436413	181436512	SINE	B3	B2	chr2B3181436338	NonProperStrand	1	1	-inf
chr2	29982687	29982777	SINE	B1_Mus2	Alu	chr2B1_Mus229982693	ProperStrand	1	chr2	29982366	29982467	SINE	B2_Mm1t	B2	chr2B2_Mm1t29982344	ProperStrand	1	1	-inf
chrX	102406245	102406270	LINE	L1MB4	L1	chrXL1MB4102406218	NonProperStrand	1	chrX	102408682	102408804	LTR	RLTR17	ERVK	chrXRLTR17102408420	NonProperStrand	1	1	-inf
chr17	4082864	4082954	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr14	60156706	60156806	protein_coding	Cab39l	intron	ENSMUSG00000021981	ProperStrand	8	1	-11.7897
chr1	27500775	27500865	LINE	Lx3C	L1	chr1Lx3C27500654	NonProperStrand	1	chr1	27500952	27501052	LTR	MTC-int	MaLR	chr1MTC-int27500968	ProperStrand	1	1	-inf
chr5	134242962	134243558	LTR	MT2A	ERVL	chr5MT2A134243407	ProperStrand	1	chr5	134242638	134242712	LTR	MTD	MaLR	chr5MTD134242504	ProperStrand	1	1	-inf
chr17	39846415	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	46727017	46727066	protein_coding	Ticam2	intron	ENSMUSG00000056130	NonProperStrand	1	1	-inf
chr18	13696847	13696937	LINE	L1MA8	L1	chr18L1MA813696610	NonProperStrand	1	chr18	13696937	13697037	LTR	ORR1E	MaLR	chr18ORR1E13696931	NonProperStrand	1	1	-inf
chr1	82949473	82949563	LTR	MTD	MaLR	chr1MTD82949406	ProperStrand	1	chr1	82949719	82949819	SINE	B4A	B4	chr1B4A82949744	NonProperStrand	1	1	-inf
chr18	35572750	35572848	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr8	80774624	80774946	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-3.7923
chr6	30379146	30379177	protein_coding	Klhdc10	intron	ENSMUSG00000029775	ProperStrand	8	chr17	24719674	24719787	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	65	1	-16.0167
chr16	98069543	98069619	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	chr14	65531027	65531093	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	1	-11.6243
chr10	9883111	9883211	LINE	Lx2	L1	chr10Lx29883026	ProperStrand	1	chr10	9883252	9883342	LINE	Lx2	L1	chr10Lx29883203	NonProperStrand	1	1	-inf
chr17	39847975	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	65255521	65255538	protein_coding	Pikfyve	intron	ENSMUSG00000025949	NonProperStrand	3	1	-4.3512
chr2	52111655	52111706	protein_coding	Neb	exon	ENSMUSG00000026950	NonProperStrand	137	chr16	55885799	55885830	protein_coding	Fam55c	intron	ENSMUSG00000075033	ProperStrand	14	1	-13.3274
chr11	8600183	8600216	LINE	L1M4c	L1	chr11L1M4c8600190	ProperStrand	1	chr11	8599923	8599966	SINE	PB1D10	Alu	chr11PB1D108599915	ProperStrand	4	1	-inf
chr13	74331355	74331445	protein_coding	Exoc3	intron	ENSMUSG00000034152	ProperStrand	24	chr3	96633316	96633416	protein_coding	Pdzk1	utr5	ENSMUSG00000038298	ProperStrand	2	1	-20.7615
chr6	88015680	88045099	SINE	B3	B2	chr6B388015679	ProperStrand	1	chr6	88005092	88005176	Simple_repeat	(TTCC)n	Simple_repeat	chr6(TTCC)n88005106	NonProperStrand	1	1	-inf
chr17	10214128	10214164	LINE	L1Md_F2	L1	chr17L1Md_F210212271	ProperStrand	3	chr17	10217722	10238914	SINE	B4A	B4	chr17B4A10217701	NonProperStrand	7	1	-25.2264
chrX	77555649	77555716	LINE	L1_Mus4	L1	chrXL1_Mus477554840	ProperStrand	7	chr12	54696832	54696906	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-14.8054
chr17	39847222	39847326	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	147718495	147718516	SINE	B1_Mus2	Alu	chr5B1_Mus2147718381	NonProperStrand	1	1	-inf
chr11	6419125	6419201	protein_coding	Myo1g	exon	ENSMUSG00000020437	NonProperStrand	91	chr13	112578214	112578300	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-3.4300
chr11	103098918	103101433	protein_coding-noncoding	Map3k14	utr3	ENSMUSG00000020941	ProperStrand	16	chr11	103098809	103101570	protein_coding	Map3k14	intron	ENSMUSG00000020941	ProperStrand	14	9	-21.2752
chr17	75370244	75370334	LINE	L1MB7	L1	chr17L1MB775370014	NonProperStrand	1	chr17	75370578	75370678	LINE	L1VL2	L1	chr17L1VL275370341	ProperStrand	1	1	-inf
chr17	39847702	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	27385196	27385212	lincRNA	4930511O05Rik	intron	ENSMUSG00000086698	NonProperStrand	1	1	-inf
chr17	37868880	37868970	LINE	L1Md_T	L1	chr17L1Md_T37867956	NonProperStrand	1	chr17	38003207	38003307	LTR	ORR1A4-int	MaLR	chr17ORR1A4-int38002774	ProperStrand	2	1	-inf
chr5	146260993	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	119505505	119505545	protein_coding	Grip1	intron	ENSMUSG00000034813	ProperStrand	62	1	-4.9992
chr17	39847174	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	36779965	36779985	protein_coding	4932438A13Rik	intron	ENSMUSG00000037270	ProperStrand	7	1	-3.6430
chr17	56258978	56259068	SINE	RSINE1	B4	chr17RSINE156258905	ProperStrand	2	chr17	56259156	56259256	protein_coding	Lrg1	utr3	ENSMUSG00000037095	NonProperStrand	28	2	-inf
chr2	93779412	93779469	LINE	L1MC4	L1	chr2L1MC493779378	NonProperStrand	1	chr17	39848004	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847762	39847865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	110881861	110881901	SINE	RSINE1	B4	chr8RSINE1110881852	NonProperStrand	1	1	-inf
chr16	36931845	36931905	protein_coding	Golgb1	intron	ENSMUSG00000034243	ProperStrand	83	chr14	52075317	52075350	protein_coding	Vmn2r89	intron	ENSMUSG00000070448	NonProperStrand	29	1	-12.8400
chr16	16358906	16358967	protein_coding	Dnm1l	utr5	ENSMUSG00000022789	ProperStrand	30	chr14	21391776	21391820	protein_coding	Usp54	intron	ENSMUSG00000034235	NonProperStrand	7	1	-17.7858
chr4	133966765	133966989	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	chr13	113980411	113980487	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-9.3529
chr12	54696915	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr12	103096544	103096630	protein_coding	Trip11	intron	ENSMUSG00000021188	NonProperStrand	3	1	-16.7351
chr6	122713714	122713786	protein_coding	Slc2a3	intron	ENSMUSG00000003153	NonProperStrand	31	chr10	83109101	83109178	protein_coding	Appl2	intron	ENSMUSG00000020263	NonProperStrand	42	1	-14.0796
chr10	81147329	81147419	LTR	MT2_Mm	ERVL	chr10MT2_Mm81146951	NonProperStrand	15	chr10	81147460	81147560	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int81147419	NonProperStrand	3	2	-inf
chr15	41795148	41795199	SINE	B4	B4	chr15B441795125	ProperStrand	1	chr11	22086188	22086235	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-inf
chr19	53190684	53190739	SINE	B4A	B4	chr19B4A53190523	ProperStrand	5	chr13	97190544	97190609	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.2290
chr17	39846051	39846080	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	157389614	157389730	protein_coding	Blcap	intron	ENSMUSG00000067787	NonProperStrand	20	1	-3.9424
chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr17	48411557	48411610	protein_coding	Treml4	intron	ENSMUSG00000051682	ProperStrand	3	1	-11.4304
chr10	117062071	117062851	DNA	URR1B	MER1_type	chr10URR1B117061992	NonProperStrand	5	chr10	117062870	117063708	LTR	ORR1E	MaLR	chr10ORR1E117062865	ProperStrand	5	3	-inf
chr3	49144387	49144461	LINE	L1Md_F2	L1	chr3L1Md_F249144109	ProperStrand	1	chr13	97190561	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr16	24225389	24225479	LTR	MTC-int	MaLR	chr16MTC-int24225267	NonProperStrand	1	chr16	24225135	24225235	LTR	MTC	MaLR	chr16MTC24224861	NonProperStrand	1	1	-inf
chr2	11778653	11778740	LINE	L1Md_F2	L1	chr2L1Md_F211777398	NonProperStrand	1	chr17	39846949	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	81408251	81408351	LTR	MTD	MaLR	chr15MTD81407982	ProperStrand	1	chr12	81414997	81415087	SINE	B3	B2	chr12B381414889	NonProperStrand	1	1	-inf
chr9	21111893	21111984	protein_coding	Ap1m2	intron	ENSMUSG00000003309	ProperStrand	17	chr4	141587966	141588004	protein_coding	Tmem51	exon	ENSMUSG00000040616	ProperStrand	27	1	-16.2030
chr19	16281580	16281720	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	chr2	91933829	91934058	protein_coding	Phf21a	intron	ENSMUSG00000058318	ProperStrand	24	1	-11.6619
chr13	102895849	102895885	LINE	Lx9	L1	chr13Lx9102894981	NonProperStrand	2	chr9	123462110	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr8	106889176	106889254	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	1	-3.6402
chr3	107674367	107674445	LINE	Lx6	L1	chr3Lx6107674387	NonProperStrand	1	chr7	71830049	71830065	protein_coding	Apba2	intron	ENSMUSG00000030519	NonProperStrand	5	1	-inf
chr2	10060729	10060779	LTR	MTEa	MaLR	chr2MTEa10060720	NonProperStrand	1	chr3	135212695	135215144	protein_coding	Manba	intron	ENSMUSG00000028164	ProperStrand	20	1	-inf
chr15	98950897	98950974	LTR	RMER17D2	ERVK	chr15RMER17D298950684	NonProperStrand	31	chr2	164770029	164770371	protein_coding	Mmp9	intron	ENSMUSG00000017737	ProperStrand	6	1	-18.2672
chr17	39846499	39846552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	124711942	124711985	protein_coding	Eno2	intron	ENSMUSG00000004267	ProperStrand	2	1	-5.3533
chr6	98688093	98688193	LINE	L1MD1	L1	chr6L1MD198687921	ProperStrand	1	chr6	98688373	98688463	SINE	B3	B2	chr6B398688272	ProperStrand	1	1	-inf
chr10	20190916	20190997	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr16	17420104	17420137	protein_coding	Snap29	intron	ENSMUSG00000022765	ProperStrand	5	1	-13.8872
chr7	141448016	141451049	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	134	chr11	118570132	118570148	protein_coding	Rbfox3	intron	ENSMUSG00000025576	ProperStrand	62	1	-10.3433
chr3	103047151	103049633	LTR	MT2A	ERVL	chr3MT2A103046726	NonProperStrand	3	chr7	99126161	99126268	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-13.7837
chr15	80078517	80082520	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr9	40804058	40804839	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	3	-8.9407
chr17	12268692	12268792	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int12261491	NonProperStrand	16	chr17	12268895	12268985	LTR	RLTR10E	ERVK	chr17RLTR10E12268916	NonProperStrand	1	1	-inf
chr4	109803216	109803316	LINE	L1MEc	L1	chr4L1MEc109803224	NonProperStrand	1	chr4	109803107	109803197	SINE	B1_Mm	Alu	chr4B1_Mm109803067	NonProperStrand	1	1	-inf
chr9	110883545	110883578	protein_coding	Lrrc2	intron	ENSMUSG00000032495	NonProperStrand	6	chr9	101075483	101075574	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	NonProperStrand	66	1	-16.6010
chr7	30582236	30582467	LTR	RLTR33	ERVK	chr7RLTR3330582087	ProperStrand	2	chr7	30577081	30577136	protein_coding	Zfp30	intron	ENSMUSG00000047473	NonProperStrand	18	1	-21.0482
chr17	39847659	39847713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	120683389	120683475	SINE	B1_Mus1	Alu	chr5B1_Mus1120683386	NonProperStrand	1	1	-inf
chr17	4082130	4082220	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr17	54113171	54113271	protein_coding	Sult1c1	intron	ENSMUSG00000023943	NonProperStrand	3	1	-14.0225
chr11	60555053	60555115	protein_coding	Top3a	intron	ENSMUSG00000002814	NonProperStrand	55	chr18	5068588	5068662	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	1	-9.2518
chr6	114920431	114920521	LTR	MTD	MaLR	chr6MTD114920454	NonProperStrand	2	chr6	114917152	114917252	protein_coding	Vgll4	intron	ENSMUSG00000030315	ProperStrand	98	2	-inf
chr18	74045153	74045244	LTR	RMER3D-int	ERVK	chr18RMER3D-int74043007	ProperStrand	5	chr18	74057730	74057751	SINE	B1F1	Alu	chr18B1F174057623	NonProperStrand	1	1	-inf
chr5	121205553	121205632	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr7	133060434	133060494	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.1790
chr18	60576132	60576232	LINE	L1Md_F	L1	chr18L1Md_F60575962	ProperStrand	3	chr15	50721018	50721108	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	1	-18.4816
chr11	20649637	20649739	LINE	Lx8	L1	chr11Lx820649232	ProperStrand	2	chr17	39846750	39846802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39846721	39846801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	131320900	131320976	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int131320911	ProperStrand	1	1	-inf
chr1	186710647	186710691	SINE	B1_Mm	Alu	chr1B1_Mm186710579	NonProperStrand	1	chr1	186710466	186710512	SINE	B2_Mm2	B2	chr1B2_Mm2186710373	NonProperStrand	1	1	-inf
chr17	4082585	4082685	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr16	60558905	60558995	protein_coding	Epha6	intron	ENSMUSG00000055540	ProperStrand	27	1	-9.2677
chr10	77993421	77995254	LINE	Lx4B	L1	chr10Lx4B77992672	ProperStrand	21	chr2	76719054	76719144	protein_coding	Ttn	intron	ENSMUSG00000051747	NonProperStrand	37	2	-inf
chr3	66425228	66425246	LINE	Lx6	L1	chr3Lx666424058	ProperStrand	1	chr2	34856510	34857688	protein_coding	Hc	intron	ENSMUSG00000026874	ProperStrand	22	1	-inf
chr14	67018618	67018697	LTR	MTB	MaLR	chr14MTB67018405	ProperStrand	1	chr14	67018846	67018915	LTR	MYSERV16_I-int	ERVK	chr14MYSERV16_I-int67018801	NonProperStrand	1	1	-inf
chr18	61705363	61705430	LINE	L1MC4	L1	chr18L1MC461705363	NonProperStrand	1	chr18	61704594	61704625	LTR	RMER13B	ERVK	chr18RMER13B61703913	NonProperStrand	1	1	-inf
chr14	70157047	70157172	lincRNA	Gm16867	intron	ENSMUSG00000085092	ProperStrand	41	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.3933
chr17	39846766	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	142703286	142703321	LTR	RMER6B	ERVK	chr5RMER6B142702967	ProperStrand	2	1	-5.3533
chr17	39847602	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	18215457	18216657	Low_complexity	GA-rich	Low_complexity	chr14GA-rich18215455	NonProperStrand	1	1	-inf
chr11	119392309	119392353	SINE	B1_Mm	Alu	chr11B1_Mm119392279	NonProperStrand	1	chr11	119392513	119392571	SINE	B3	B2	chr11B3119392446	NonProperStrand	1	1	-inf
chr4	143420578	143420674	LINE	L1Md_F2	L1	chr4L1Md_F2143417397	ProperStrand	9	chr12	54696812	54696845	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-14.2691
chr13	44629426	44629526	LINE	Lx5	L1	chr13Lx544629303	NonProperStrand	1	chr13	44629219	44629309	Simple_repeat	(TAGA)n	Simple_repeat	chr13(TAGA)n44629215	ProperStrand	1	1	-inf
chr1	49016798	49016888	LINE	Lx2	L1	chr1Lx249016772	NonProperStrand	1	chr1	49016549	49016649	LINE	Lx2B	L1	chr1Lx2B49016458	ProperStrand	1	1	-inf
chr17	39847891	39847951	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	168188580	168188630	LTR	MT2B2	ERVL	chr2MT2B2168188594	ProperStrand	3	1	-4.3512
chr10	122565363	122565920	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr3	55094870	55198860	protein_coding	Dclk1	intron	ENSMUSG00000027797	NonProperStrand	13	2	-inf
chr8	45500383	45500473	LINE	L1MC4	L1	chr8L1MC445500153	NonProperStrand	1	chr8	45500596	45500696	SINE	B2_Mm2	B2	chr8B2_Mm245500561	NonProperStrand	1	1	-inf
chr10	45648640	45648656	LINE	Lx8	L1	chr10Lx845646829	ProperStrand	1	chr17	39847301	39847327	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	57832148	57832243	LTR	RLTR10-int	ERVK	chr9RLTR10-int57831428	ProperStrand	1	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr5	65550793	65550860	protein_coding	Klhl5	intron	ENSMUSG00000054920	ProperStrand	40	1	-6.7740
chr9	9572201	9572291	LINE	Lx7	L1	chr9Lx79571973	ProperStrand	1	chr9	9571749	9571849	SINE	B2_Mm2	B2	chr9B2_Mm29571773	ProperStrand	1	1	-inf
chr16	35981617	35981659	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr1	65165233	65166165	protein_coding	D630023F18Rik	exon	ENSMUSG00000044816	ProperStrand	10	1	-13.5533
chr9	11289636	11289736	LINE	L1M1	L1	chr9L1M111289617	ProperStrand	1	chr9	11289429	11289519	LINE	L1M3	L1	chr9L1M311289412	ProperStrand	1	1	-inf
chr17	39846588	39846701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	43418007	43418037	SINE	PB1D10	Alu	chr13PB1D1043417984	ProperStrand	1	1	-inf
chr19	4762547	4762614	protein_coding	Rbm4b	exon	ENSMUSG00000033760	NonProperStrand	33	chr19	4748886	4748916	protein_coding	Spnb3	intron	ENSMUSG00000067889	NonProperStrand	23	1	-15.1835
chr19	61174919	61175009	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	16	chr9	15314881	15314981	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-13.1426
chr19	5800940	5800962	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chrX	130186396	130186518	protein_coding	Pcdh19	intron	ENSMUSG00000051323	NonProperStrand	20	1	-6.5989
chr9	123462032	123462052	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	78402588	78402706	protein_coding	Rac2	intron	ENSMUSG00000033220	ProperStrand	4	1	-6.3300
chr2	39571591	39571681	LINE	L1Md_F2	L1	chr2L1Md_F239570937	ProperStrand	1	chr2	39572120	39572220	LINE	L1_Mur1	L1	chr2L1_Mur139571754	ProperStrand	1	1	-inf
chr13	51648198	51648295	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	33	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.7644
chr18	47055265	47055355	protein_coding	4833403I15Rik	intron	ENSMUSG00000024481	ProperStrand	77	chr1	136364889	136364952	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-9.8785
chr16	47745638	47745738	LINE	Lx7	L1	chr16Lx747744746	ProperStrand	1	chr16	47739314	47739404	LTR	MLT1F	MaLR	chr16MLT1F47739298	ProperStrand	1	1	-inf
chr6	84497715	84497815	LINE	Lx9	L1	chr6Lx984497575	ProperStrand	1	chr6	84498076	84498166	LINE	Lx9	L1	chr6Lx984497991	ProperStrand	1	1	-inf
chr9	110093014	110093113	protein_coding	Smarcc1	intron	ENSMUSG00000032481	NonProperStrand	43	chr1	135296247	135296302	protein_coding	Sox13	intron	ENSMUSG00000070643	ProperStrand	9	1	-16.6201
chr4	46179873	46179927	protein_coding	Xpa	intron	ENSMUSG00000028329	ProperStrand	20	chr7	123286620	123286710	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	1	-11.9804
chr17	39847207	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	121253984	121254039	SINE	B1_Mur3	Alu	chr11B1_Mur3121253970	ProperStrand	1	1	-inf
chr10	23785346	23785429	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr4	53860706	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-7.4691
chr4	84335429	84335472	LTR	MLT1A0	MaLR	chr4MLT1A084335399	ProperStrand	1	chr4	84336116	84336174	SINE	B1F2	Alu	chr4B1F284336074	ProperStrand	1	1	-inf
chr1	23775571	23775661	protein_coding	B3gat2	intron	ENSMUSG00000026156	NonProperStrand	12	chr1	23806514	23806614	protein_coding	B3gat2	intron	ENSMUSG00000026156	ProperStrand	3	1	-inf
chr17	39847956	39847973	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	24849047	24849127	SINE	B3	B2	chr17B324849031	NonProperStrand	1	1	-inf
chr17	50420126	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr13	97190590	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1761
chr6	39402656	39402726	SINE	B1_Mus2	Alu	chr6B1_Mus239402612	ProperStrand	2	chr5	114851979	114852001	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-16.7741
chr1	17372861	17372961	LINE	L1Md_F2	L1	chr1L1Md_F217372839	NonProperStrand	1	chr1	17372666	17372756	SINE	B2_Mm2	B2	chr1B2_Mm217372633	ProperStrand	1	1	-inf
chr12	111543117	111543165	LINE	Lx2B	L1	chr12Lx2B111542971	ProperStrand	4	chr17	39846428	39846523	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr11	69073518	69073565	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	chr9	123462053	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.2823
chr9	65284723	65284834	protein_coding	Mtfmt	intron	ENSMUSG00000059183	NonProperStrand	8	chr12	3248594	3248613	protein_coding	1700012B15Rik	intron	ENSMUSG00000079179	ProperStrand	5	1	-22.1864
chr3	48544402	48544418	LINE	Lx	L1	chr3Lx48544193	NonProperStrand	1	chr17	39846407	39846513	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847257	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	55534163	55534185	SINE	B1_Mur4	Alu	chr13B1_Mur455534162	ProperStrand	2	1	-6.5615
chr19	13213635	13213735	LTR	RLTR45-int	ERVK	chr19RLTR45-int13212863	ProperStrand	1	chr7	47188504	47188594	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	1	-inf
chr2	114508771	114508810	lincRNA	Gm13972	intron	ENSMUSG00000084785	NonProperStrand	4	chr16	20681837	20681901	protein_coding	Eif4g1	exon	ENSMUSG00000045983	ProperStrand	123	1	-16.2566
chr11	22972140	22972186	lincRNA	Gm12059	intron	ENSMUSG00000085665	NonProperStrand	17	chr15	99153775	99153875	protein_coding	Fmnl3	exon	ENSMUSG00000023008	NonProperStrand	98	1	-13.6006
chr12	39694257	39694347	LTR	RMER17C-int	ERVK	chr12RMER17C-int39694230	ProperStrand	1	chr12	39694134	39694235	LTR	RMER17C	ERVK	chr12RMER17C39694109	ProperStrand	1	1	-inf
chr1	179299126	179299235	LINE	L1MC5	L1	chr1L1MC5179299061	ProperStrand	2	chr1	179298946	179299082	SINE	B2_Mm2	B2	chr1B2_Mm2179298894	NonProperStrand	2	2	-inf
chr7	12862811	12862878	LINE	Lx	L1	chr7Lx12862496	ProperStrand	1	chr9	123462081	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	137571467	137571657	LTR	MTE2b	MaLR	chr5MTE2b137571466	ProperStrand	2	chr5	137571310	137571400	LTR	ORR1E	MaLR	chr5ORR1E137571058	NonProperStrand	2	2	-inf
chr7	118537594	118537611	LINE	L2c	L2	chr7L2c118537570	NonProperStrand	3	chr15	76653647	76653764	SINE	PB1D10	Alu	chr15PB1D1076653675	NonProperStrand	1	1	-inf
chr2	130622406	130622469	protein_coding	4930402H24Rik	intron	ENSMUSG00000027309	ProperStrand	117	chr2	130629363	130629454	pseudogene	Gm14057	.	ENSMUSG00000089662	ProperStrand	1	1	-inf
chr17	39847118	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	122865266	122867657	protein_coding	Hpcal4	intron	ENSMUSG00000046093	NonProperStrand	4	1	-4.8204
chr2	90736663	90736693	protein_coding	Ndufs3	intron	ENSMUSG00000005510	NonProperStrand	8	chr2	90703955	90706972	protein_coding	Mtch2	utr3	ENSMUSG00000027282	ProperStrand	13	1	-20.3570
chr17	39847277	39847328	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	46584298	46584361	protein_coding	Trim8	intron	ENSMUSG00000025034	ProperStrand	3	1	-5.4882
chr11	117853823	117853901	protein_coding	Pgs1	intron	ENSMUSG00000017715	ProperStrand	51	chr2	144578415	144579329	protein_coding	Dtd1	intron	ENSMUSG00000027430	ProperStrand	26	1	-14.0443
chr13	58902037	58902122	LINE	Lx5	L1	chr13Lx558901896	NonProperStrand	1	chr13	55312161	55312180	protein_coding	Nsd1	intron	ENSMUSG00000021488	NonProperStrand	62	1	-inf
chr5	140300283	140300510	protein_coding	Psmg3	intron	ENSMUSG00000029551	ProperStrand	14	chr1	74058744	74058764	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	2	-21.1756
chr8	35132219	35132238	LTR	ORR1A0	MaLR	chr8ORR1A035132087	ProperStrand	2	chr8	73286652	73286771	protein_coding	Ifi30	utr3	ENSMUSG00000031838	ProperStrand	5	1	-inf
chr2	178924908	178925008	LTR	MLT1A	MaLR	chr2MLT1A178924873	NonProperStrand	1	chr2	178925234	178925324	SINE	ID_B1	B4	chr2ID_B1178925181	ProperStrand	1	1	-inf
chr1	156066521	156066544	DNA	URR1B	MER1_type	chr1URR1B156066506	NonProperStrand	1	chr1	156066576	156066696	LTR	ORR1B1	MaLR	chr1ORR1B1156066571	NonProperStrand	1	1	-inf
chr6	97173655	97173688	protein_coding	Arl6ip5	intron	ENSMUSG00000035199	NonProperStrand	19	chr12	80517880	80517903	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-12.1736
chr17	46683328	46683418	lincRNA	Gm16736	intron	ENSMUSG00000086673	NonProperStrand	106	chr17	46683222	46683322	protein_coding	Cul9	utr5	ENSMUSG00000040327	ProperStrand	54	2	-17.3641
chr10	52355765	52355807	LINE	Lx7	L1	chr10Lx752355222	ProperStrand	1	chr13	97511411	97511480	LTR	MLT1C	MaLR	chr13MLT1C97511417	ProperStrand	1	1	-inf
chr19	6941151	6941168	LTR	RMER16-int	ERVK	chr19RMER16-int6941153	NonProperStrand	1	chr9	123461884	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	81181529	81181615	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	chr3	20027325	20027401	protein_coding	Gyg	intron	ENSMUSG00000019528	ProperStrand	2	1	-17.2730
chr14	20307284	20307712	LTR	MMERGLN-int	ERV1	chr14MMERGLN-int20306779	ProperStrand	4	chr14	20306276	20306366	LTR	RLTR1	ERV1	chr14RLTR120306099	ProperStrand	3	3	-inf
chr19	4732956	4733046	protein_coding	Spnb3	intron	ENSMUSG00000067889	NonProperStrand	23	chr16	19883802	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-10.8402
chr4	101090325	101090443	LINE	L1Md_F2	L1	chr4L1Md_F2101090100	ProperStrand	3	chr4	101091037	101091072	SINE	PB1D10	Alu	chr4PB1D10101091009	ProperStrand	1	1	-inf
chr17	39846974	39847060	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	34227175	34228933	SINE	B2_Mm2	B2	chr7B2_Mm234227134	ProperStrand	4	2	-6.6967
chr14	66385700	66385790	LTR	ORR1B2	MaLR	chr14ORR1B266385637	NonProperStrand	1	chr14	66385964	66386064	LTR	ORR1B2	MaLR	chr14ORR1B266385925	NonProperStrand	1	1	-inf
chr9	97281780	97281870	LTR	ORR1D2	MaLR	chr9ORR1D297281552	ProperStrand	1	chr9	97281991	97282091	SINE	B3	B2	chr9B397281918	NonProperStrand	1	1	-inf
chr17	39847735	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	80614099	80614117	protein_coding	Ttc39d	intron	ENSMUSG00000046196	ProperStrand	3	1	-4.3512
chr2	31673891	31673991	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	chr1	161241658	161241748	protein_coding	Rfwd2	intron	ENSMUSG00000040782	NonProperStrand	36	3	-inf
chr17	39843376	39843497	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	1	-4.0202
chr12	105787795	105787885	LTR	MTEa	MaLR	chr12MTEa105787640	NonProperStrand	6	chr12	105788882	105788982	SINE	PB1D10	Alu	chr12PB1D10105788903	NonProperStrand	1	1	-inf
chr3	129579602	129579692	LTR	RLTR9A	ERVK	chr3RLTR9A129579448	ProperStrand	3	chr3	129579813	129579913	SINE	RSINE1	B4	chr3RSINE1129579771	NonProperStrand	1	1	-inf
chr2	59699154	59699244	protein_coding	Wdsub1	intron	ENSMUSG00000026988	NonProperStrand	22	chr13	49386312	49386412	protein_coding	Fgd3	intron	ENSMUSG00000037946	NonProperStrand	31	2	-inf
chr12	59040423	59040521	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr3	90220975	90220991	protein_coding	Ints3	intron	ENSMUSG00000027933	NonProperStrand	20	1	-12.2577
chr17	39847477	39847575	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	91083616	91083659	LTR	RLTR19-int	ERVK	chr6RLTR19-int91083565	ProperStrand	2	1	-5.4040
chr15	87652139	87652187	LTR	ORR1B1	MaLR	chr15ORR1B187652008	NonProperStrand	2	chr15	87672526	87672584	LTR	RLTR11A2	ERVK	chr15RLTR11A287672399	NonProperStrand	1	1	-inf
chr14	57640437	57640560	LTR	ORR1A4	MaLR	chr14ORR1A457640470	ProperStrand	1	chr4	86985246	86985262	SINE	B3	B2	chr4B386985233	ProperStrand	10	1	-inf
chr17	39847527	39847548	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	27939789	27939868	protein_coding	Fcnb	intron	ENSMUSG00000026835	NonProperStrand	3	1	-4.3512
chr14	26631410	26631450	LTR	RLTR17	ERVK	chr14RLTR1726631176	ProperStrand	1	chr11	46111815	46111884	protein_coding	Cyfip2	intron	ENSMUSG00000020340	NonProperStrand	77	1	-inf
chr12	24708416	24708432	Low_complexity	GA-rich	Low_complexity	chr12GA-rich24708410	NonProperStrand	1	chr8	125554771	125554876	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-inf
chr2	121881614	121881691	protein_coding	Eif3j	utr3	ENSMUSG00000027236	ProperStrand	6	chr2	121888615	121888682	protein_coding	Spg11	intron	ENSMUSG00000033396	NonProperStrand	21	1	-19.2239
chr13	8767307	8767366	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	chr1	89807278	89807373	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-10.2007
chr17	39846970	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	67419670	67419768	Simple_repeat	(CACTG)n	Simple_repeat	chr9(CACTG)n67419556	NonProperStrand	2	1	-5.3533
chr13	29772499	29772579	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr3	75946690	75946760	protein_coding	Fstl5	intron	ENSMUSG00000034098	NonProperStrand	33	1	-9.1511
chr5	76870896	76871010	LINE	Lx7	L1	chr5Lx776870891	ProperStrand	1	chr5	76872073	76872102	LTR	RMER19B	ERVK	chr5RMER19B76871817	NonProperStrand	3	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr13	44869574	44870017	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	11	-18.1617
chr15	76061527	76061627	protein_coding-noncoding	Plec	utr3	ENSMUSG00000022565	ProperStrand	2	chr15	76061605	76061695	protein_coding	Plec	exon	ENSMUSG00000022565	ProperStrand	94	1	-18.6200
chr14	19278162	19278193	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr2	44859791	44859812	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	25	1	-13.3210
chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr9	120952995	120955213	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-6.5557
chr8	22911922	22911946	DNA	URR1B	MER1_type	chr8URR1B22911818	NonProperStrand	1	chr17	39847381	39847403	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	4045455	4045497	LTR	MLT1B	MaLR	chr10MLT1B4045342	ProperStrand	1	chr17	39846759	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	100711865	100712103	protein_coding	Stat5b	utr5	ENSMUSG00000020919	ProperStrand	21	chr5	149203926	149203985	protein_coding	Slc7a1	intron	ENSMUSG00000041313	NonProperStrand	36	1	-15.1889
chr9	110281288	110281331	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr17	87718729	87719312	protein_coding	Ttc7	intron	ENSMUSG00000036918	ProperStrand	70	1	-7.2559
chr17	12748766	12769448	SINE	B3	B2	chr17B312769356	ProperStrand	1	chr9	123461884	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847107	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	98436875	98436900	SINE	ID_B1	B4	chr11ID_B198436807	ProperStrand	1	1	-inf
chr17	39847661	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	21674135	21674235	protein_coding	1110059E24Rik	intron	ENSMUSG00000035171	ProperStrand	4	1	-3.7035
chr17	39842997	39843065	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr1	152837183	152837199	protein_coding	Hmcn1	intron	ENSMUSG00000066842	NonProperStrand	30	1	-6.7565
chr15	82891607	82891636	Other	RMER1B	Other	chr15RMER1B82891488	ProperStrand	1	chr19	57969390	57969407	protein_coding	Atrnl1	intron	ENSMUSG00000054843	NonProperStrand	16	1	-inf
chr4	126877671	126877703	protein_coding	Dlgap3	intron	ENSMUSG00000042388	NonProperStrand	48	chr17	30193853	30193875	protein_coding	Zfand3	intron	ENSMUSG00000044477	ProperStrand	97	1	-11.5066
chr4	126392077	126392173	LINE	Lx2B	L1	chr4Lx2B126391488	ProperStrand	1	chr17	39847649	39847687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	178322221	178322331	LINE	Lx5	L1	chr1Lx5178322163	NonProperStrand	9	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-13.8339
chr7	143295162	143295262	LINE	Lx9	L1	chr7Lx9143295170	ProperStrand	67	chr7	143290974	143291063	LTR	ORR1A4	MaLR	chr7ORR1A4143290837	ProperStrand	12	1	-15.0850
chr6	71552401	71560937	protein_coding	Kdm3a	intron	ENSMUSG00000053470	NonProperStrand	30	chr6	30095039	30095092	protein_coding	Nrf1	utr3	ENSMUSG00000058440	ProperStrand	52	1	-13.7134
chr8	22363889	22363989	LINE	L1Md_F	L1	chr8L1Md_F22361580	ProperStrand	1	chr8	22364270	22364360	LINE	L1Md_F	L1	chr8L1Md_F22364001	ProperStrand	1	1	-inf
chr7	117822642	117822742	LINE	L1MD3	L1	chr7L1MD3117822641	ProperStrand	1	chr1	133658769	133658859	protein_coding	Slc26a9	intron	ENSMUSG00000042268	NonProperStrand	64	1	-inf
chr6	103907906	103907996	LINE	Lx4B	L1	chr6Lx4B103907511	ProperStrand	1	chr6	103912086	103912186	LINE	Lx5	L1	chr6Lx5103911928	NonProperStrand	1	1	-inf
chrX	20262302	20262392	SINE	B3	B2	chrXB320262237	NonProperStrand	1	chrX	20262546	20262646	SINE	PB1D7	Alu	chrXPB1D720262526	ProperStrand	1	1	-inf
chr11	109011651	109011693	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	128447061	128447147	SINE	B3A	B2	chr10B3A128447007	NonProperStrand	1	1	-inf
chr11	68385231	68385303	LINE	L1M4	L1	chr11L1M468385076	NonProperStrand	10	chr17	23550260	23550309	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int23549476	ProperStrand	5	1	-21.4193
chr4	139347621	139347707	protein_coding	Pax7	intron	ENSMUSG00000028736	ProperStrand	24	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-9.6956
chr8	40774064	40774154	LTR	RLTR22_Mur	ERVK	chr8RLTR22_Mur40773873	ProperStrand	1	chr8	40773760	40773860	Simple_repeat	(TTCC)n	Simple_repeat	chr8(TTCC)n40773689	NonProperStrand	1	1	-inf
chr17	39847219	39847270	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	96353053	96353095	LTR	RMER15	ERVL	chr9RMER1596353044	NonProperStrand	1	1	-inf
chr2	22744839	22744912	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	28562607	28562960	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int28561999	NonProperStrand	9	2	-16.9670
chr8	111550358	111550432	LINE	L1MA9	L1	chr8L1MA9111550044	ProperStrand	2	chr17	39847181	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr15	53244064	53244200	LINE	Lx3_Mus	L1	chr15Lx3_Mus53244016	NonProperStrand	12	chr1	60497660	60497684	protein_coding	Abi2	intron	ENSMUSG00000026782	ProperStrand	13	1	-18.6827
chr10	122033532	122033634	LINE	L1MC3	L1	chr10L1MC3122033351	ProperStrand	3	chr14	19278160	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-17.9278
chr3	16158945	16159035	LTR	RLTR9E	ERVK	chr3RLTR9E16158942	NonProperStrand	1	chr3	16159232	16159332	LTR	RLTR9E	ERVK	chr3RLTR9E16159123	NonProperStrand	1	1	-inf
chr17	39846139	39846205	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	16754830	16754848	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	1	-3.6773
chrX	56921749	56921849	LINE	L1Md_T	L1	chrXL1Md_T56920179	NonProperStrand	2	chrX	56862875	56862965	LINE	L1_Mm	L1	chrXL1_Mm56862493	ProperStrand	1	1	-inf
chr8	72252630	72252720	LTR	IAPLTR2_Mm	ERVK	chr8IAPLTR2_Mm72252205	ProperStrand	4	chr8	72252768	72252868	LTR	MurERV4_19-int	ERVK	chr8MurERV4_19-int72252793	ProperStrand	7	4	-inf
chr13	114097460	114097534	LINE	L1MA5A	L1	chr13L1MA5A114097225	NonProperStrand	1	chr13	113970277	113970327	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-inf
chr14	117254409	117254464	LTR	MERVK26-int	ERVK	chr14MERVK26-int117253783	ProperStrand	1	chr17	39847650	39847695	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	31170261	31178150	protein_coding-noncoding	Tmem214	utr5	ENSMUSG00000038828	NonProperStrand	14	chr5	31172962	31178256	protein_coding	Tmem214	exon	ENSMUSG00000038828	NonProperStrand	29	5	-19.5787
chr14	19278161	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr15	57883484	57892196	protein_coding	Zhx1	intron	ENSMUSG00000022361	ProperStrand	13	2	-inf
chr17	39847804	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	85098614	85098681	LTR	RMER19B	ERVK	chr8RMER19B85098524	ProperStrand	1	1	-inf
chr17	39846457	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	84866404	84866458	protein_coding-noncoding	Fbxo36	utr5	ENSMUSG00000073633	ProperStrand	2	2	-inf
chr17	47624884	47624974	SINE	B3	B2	chr17B347624879	ProperStrand	4	chr17	47624980	47625080	protein_coding	Taf8	utr3	ENSMUSG00000023980	NonProperStrand	8	4	-inf
chr12	54696806	54696876	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr4	42953372	42953452	protein_coding	N28178	utr3	ENSMUSG00000036062	ProperStrand	2	1	-17.7832
chr12	106449101	106449201	LTR	MER34	ERV1	chr12MER34106449011	NonProperStrand	1	chr12	106449371	106449461	SINE	B1_Mur1	Alu	chr12B1_Mur1106449380	NonProperStrand	1	1	-inf
chr10	59137103	59137125	LINE	Lx8	L1	chr10Lx859136895	ProperStrand	1	chr3	31106594	31106688	protein_coding	Slc7a14	utr3	ENSMUSG00000069072	NonProperStrand	43	1	-inf
chr10	24499465	24499569	protein_coding	Enpp3	intron	ENSMUSG00000019989	ProperStrand	17	chr8	16408218	16408239	protein_coding	Csmd1	intron	ENSMUSG00000060924	NonProperStrand	23	1	-16.5187
chr1	118942697	118942794	LINE	L1Md_F2	L1	chr1L1Md_F2118941257	ProperStrand	49	chr3	156550263	156550279	protein_coding	Negr1	intron	ENSMUSG00000040037	ProperStrand	24	1	-14.2877
chr7	30641462	30644567	LTR	ORR1D1	MaLR	chr7ORR1D130643312	ProperStrand	9	chr7	30644567	30644877	Low_complexity	GA-rich	Low_complexity	chr7GA-rich30644798	NonProperStrand	8	8	-inf
chr1	13275915	13275980	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	chrX	13281106	13284181	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-7.8288
chr17	39846427	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	123130894	123131891	LTR	MTA_Mm	MaLR	chr9MTA_Mm123130889	ProperStrand	4	1	-3.6552
chr5	40439150	40439250	LINE	L1MC3	L1	chr5L1MC340439001	ProperStrand	1	chr5	40442638	40442728	LTR	RLTR4_MM-int	ERV1	chr5RLTR4_MM-int40441406	ProperStrand	1	1	-inf
chr13	114076601	114076671	LINE	L1_Mm	L1	chr13L1_Mm114076332	NonProperStrand	2	chr17	75535830	75535902	protein_coding	Ltbp1	intron	ENSMUSG00000001870	NonProperStrand	24	2	-inf
chr10	42202550	42202640	LTR	RLTR33	ERVK	chr10RLTR3342202480	NonProperStrand	3	chr10	42202406	42202507	SINE	B1_Mm	Alu	chr10B1_Mm42202333	NonProperStrand	3	3	-inf
chr11	22955784	22955884	SINE	B3	B2	chr11B322955739	ProperStrand	3	chr11	22955892	22955982	SINE	B4	B4	chr11B422955913	ProperStrand	3	3	-inf
chr5	125336397	125336424	protein_coding	Ccdc92	intron	ENSMUSG00000037979	ProperStrand	54	chr13	97190562	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.3273
chr3	144522187	144522232	LTR	MT2B2	ERVL	chr3MT2B2144522054	ProperStrand	1	chr9	123461954	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	74923690	74923790	LINE	L1MB7	L1	chr7L1MB774923669	NonProperStrand	1	chr7	74923522	74923612	LTR	MT2_Mm	ERVL	chr7MT2_Mm74923182	NonProperStrand	1	1	-inf
chr8	46497669	46497769	LTR	MuRRS4-int	ERV1	chr8MuRRS4-int46497660	ProperStrand	3	chr8	46497562	46497652	SINE	B4A	B4	chr8B4A46497363	NonProperStrand	3	3	-inf
chr17	39847611	39847643	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	98534021	98534122	SINE	ID_B1	B4	chr15ID_B198534031	NonProperStrand	1	1	-inf
chr1	176231753	176231853	LINE	L1MCa	L1	chr1L1MCa176231674	ProperStrand	1	chr1	176231143	176231233	SINE	B4A	B4	chr1B4A176231105	ProperStrand	1	1	-inf
chr16	55966386	55966427	protein_coding	Rpl24	utr5	ENSMUSG00000022601	ProperStrand	72	chr1	71614884	71614931	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	1	-11.1023
chr3	89144419	89144519	protein_coding-noncoding	Adam15	utr3	ENSMUSG00000028041	ProperStrand	1	chr3	89144838	89144928	protein_coding	Adam15	intron	ENSMUSG00000028041	ProperStrand	2	1	-inf
chr6	38841261	38841307	protein_coding	Tbxas1	intron	ENSMUSG00000029925	NonProperStrand	55	chr6	38822638	38822674	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	1	-11.6195
chr10	96632495	96632545	LINE	L1MC4a	L1	chr10L1MC4a96632331	NonProperStrand	1	chr10	96633797	96633883	LINE	Lx7	L1	chr10Lx796633101	ProperStrand	1	1	-inf
chr3	122635684	122635701	Low_complexity	AT_rich	Low_complexity	chr3AT_rich122635678	ProperStrand	3	chr5	149048727	149048825	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-17.4212
chr17	25908006	25908096	SINE	B1_Mur4	Alu	chr17B1_Mur425908005	NonProperStrand	3	chr17	25907911	25908011	SINE	PB1D10	Alu	chr17PB1D1025907904	NonProperStrand	3	3	-inf
chr3	36568805	36569044	protein_coding-noncoding	Trpc3	utr3	ENSMUSG00000027716	ProperStrand	5	chr7	125801207	125801271	protein_coding	Tmc5	intron	ENSMUSG00000030650	ProperStrand	26	1	-19.1584
chr17	39846932	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	58586638	58591129	protein_coding	Fam126b	intron	ENSMUSG00000038174	NonProperStrand	2	1	-5.3533
chr17	47196671	47196761	Low_complexity	G-rich	Low_complexity	chr17G-rich47196674	ProperStrand	1	chr17	47198642	47198742	SINE	B1_Mus2	Alu	chr17B1_Mus247198590	NonProperStrand	1	1	-inf
chr17	39846807	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	125632994	125633038	SINE	MIR	MIR	chr4MIR125632932	NonProperStrand	1	1	-inf
chr8	72526814	72526914	SINE	B1_Mus1	Alu	chr8B1_Mus172526793	ProperStrand	5	chr8	72526970	72527060	SINE	ID_B1	B4	chr8ID_B172526944	ProperStrand	4	4	-inf
chr9	72748655	72748722	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	chr5	110851772	110851863	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	NonProperStrand	38	1	-9.5712
chr3	127323752	127323784	LINE	Lx8	L1	chr3Lx8127323507	ProperStrand	2	chr6	28628049	28628071	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-13.9779
chr6	117924693	117924753	SINE	B3	B2	chr6B3117924621	NonProperStrand	10	chr3	153909417	153909512	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	1	-12.5293
chr7	100846192	100846378	LTR	RMER6B	ERVK	chr7RMER6B100846061	NonProperStrand	8	chr7	25420845	25421252	lincRNA	Gm16737	intron	ENSMUSG00000086678	NonProperStrand	9	8	-inf
chr19	12785991	12786067	antisense	Gm15962	.	ENSMUSG00000084981	ProperStrand	25	chr1	74524101	74524127	protein_coding	Usp37	intron	ENSMUSG00000033364	NonProperStrand	40	1	-14.6160
chr11	48800865	48800932	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr9	32057856	32057907	protein_coding	Arhgap32	intron	ENSMUSG00000041444	ProperStrand	30	1	-10.6682
chr6	3201443	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	79580672	79580735	lincRNA	Gm16576	intron	ENSMUSG00000087543	NonProperStrand	10	1	-6.3611
chr11	50325300	50325361	LTR	MTD	MaLR	chr11MTD50325066	NonProperStrand	3	chr8	41368228	41368324	protein_coding	Fgf20	intron	ENSMUSG00000031603	ProperStrand	5	1	-inf
chr12	67009613	67009634	LINE	L2a	L2	chr12L2a67009558	NonProperStrand	1	chr2	5379278	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr4	148514955	148521371	LTR	RMER17B	ERVK	chr4RMER17B148520567	ProperStrand	4	chr4	148521382	148524548	protein_coding	Pgd	utr3	ENSMUSG00000028961	NonProperStrand	19	1	-20.0437
chr1	72199451	72199486	LINE	Lx5	L1	chr1Lx572199195	NonProperStrand	1	chr14	31135697	31135762	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	1	-inf
chr19	8833669	8833769	protein_coding	Nxf1	intron	ENSMUSG00000010097	ProperStrand	13	chr17	84710361	84710579	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	2	-22.1655
chr10	75859461	75859518	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	78	chr19	46507146	46507193	protein_coding	Sufu	intron	ENSMUSG00000025231	ProperStrand	59	1	-11.5287
chr16	70192651	70192741	LINE	Lx7	L1	chr16Lx770191324	ProperStrand	1	chr16	43344626	43344726	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	1	-inf
chr11	12963936	12964036	LINE	Lx	L1	chr11Lx12963860	NonProperStrand	1	chr7	103550473	103550563	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr3	100953759	100953859	LTR	MLT1J-int	MaLR	chr3MLT1J-int100953736	NonProperStrand	4	chr3	100953890	100953980	SINE	B1_Mur2	Alu	chr3B1_Mur2100953890	ProperStrand	5	4	-inf
chr6	3201474	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	29700105	29700148	protein_coding	Tbc1d22b	intron	ENSMUSG00000042203	ProperStrand	19	1	-5.0638
chr7	34343057	34343101	LINE	L1Md_F2	L1	chr7L1Md_F234342755	ProperStrand	1	chr7	34341337	34341439	LINE	L1Md_Gf	L1	chr7L1Md_Gf34339576	ProperStrand	11	1	-inf
chr9	110281285	110281346	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	57614531	57614620	protein_coding	Palm2	intron	ENSMUSG00000090053	ProperStrand	22	1	-9.5855
chr4	44015206	44015308	LINE	Lx7	L1	chr4Lx744014384	ProperStrand	9	chr17	39843987	39844025	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	1	-7.7660
chr17	39846941	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	130735431	130735545	SINE	B1_Mur4	Alu	chr7B1_Mur4130735390	NonProperStrand	1	1	-inf
chr4	84516637	84516679	LINE	L1MA9	L1	chr4L1MA984516604	ProperStrand	1	chr9	123462033	123462106	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847247	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	91488499	91488598	protein_coding	Zfp408	intron	ENSMUSG00000075040	NonProperStrand	2	1	-6.5615
chr7	126798903	126799003	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr11	120790039	120790129	protein_coding	Ccdc57	intron	ENSMUSG00000048445	NonProperStrand	71	1	-8.4360
chrX	92446894	92446917	LTR	MTD	MaLR	chrXMTD92446579	NonProperStrand	1	chr18	10817560	10817588	protein_coding	Mib1	utr3	ENSMUSG00000024294	ProperStrand	51	1	-inf
chr17	39843359	39843413	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	115584893	115584937	protein_coding	Unc119b	utr5	ENSMUSG00000046562	NonProperStrand	14	1	-5.3047
chr8	83582211	83582302	LTR	MT2A	ERVL	chr8MT2A83581928	NonProperStrand	2	chr13	44869626	44869682	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr11	83060485	83060537	LTR	ORR1B1-int	MaLR	chr11ORR1B1-int83060413	ProperStrand	1	chr7	133046482	133046571	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr11	8632931	8633026	LINE	L1_Mus1	L1	chr11L1_Mus18631304	ProperStrand	7	chr5	8428349	8428397	protein_coding	Slc25a40	intron	ENSMUSG00000054099	ProperStrand	50	1	-16.8347
mmu-miR-6238	2	22	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	chr19	5952562	5952653	protein_coding	Pola2	intron	ENSMUSG00000024833	ProperStrand	80	1	-13.4805
chr1	132612093	132612133	protein_coding	Pfkfb2	intron	ENSMUSG00000026409	ProperStrand	26	chr18	39470813	39470853	protein_coding	Arhgap26	intron	ENSMUSG00000036452	NonProperStrand	47	1	-14.2105
chr1	64546661	64546710	LINE	L1_Mur3	L1	chr1L1_Mur364544621	ProperStrand	1	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr9	119912309	119912349	SINE	B1_Mur1	Alu	chr9B1_Mur1119912316	ProperStrand	3	chr9	119912457	119912522	Simple_repeat	(GA)n	Simple_repeat	chr9(GA)n119912471	ProperStrand	1	1	-inf
chr6	108855522	108855601	LINE	Lx8	L1	chr6Lx8108855360	NonProperStrand	3	chr10	58388479	58388535	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	2	-20.3837
chr15	96389471	96389566	LTR	MT2_Mm	ERVL	chr15MT2_Mm96389399	NonProperStrand	1	chr17	39846462	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	9545654	9545728	protein_coding	Adhfe1	intron	ENSMUSG00000025911	ProperStrand	25	chr14	11082830	11082877	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	48	1	-14.2438
chr11	88611783	88611837	SINE	B1F2	Alu	chr11B1F288611795	ProperStrand	1	chr11	88611602	88611696	Simple_repeat	(CTCTG)n	Simple_repeat	chr11(CTCTG)n88611500	NonProperStrand	1	1	-inf
chr5	65337353	65337430	LINE	L1Md_F2	L1	chr5L1Md_F265334473	NonProperStrand	1	chr9	123462033	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	105374906	105374925	LTR	ORR1A4	MaLR	chr2ORR1A4105374826	NonProperStrand	1	chr6	38802666	38802740	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	1	-inf
chr15	99622257	99623591	protein_coding	Lima1	intron	ENSMUSG00000023022	ProperStrand	62	chr11	117685224	117685324	protein_coding	RP23-268N22.1	intron	ENSMUSG00000093485	ProperStrand	53	2	-19.2384
chr15	77941314	77941333	protein_coding	Cacng2	intron	ENSMUSG00000019146	NonProperStrand	7	chr4	132531311	132531384	protein_coding	Fgr	intron	ENSMUSG00000028874	NonProperStrand	17	1	-18.7319
chr18	85698226	85698276	LINE	Lx8	L1	chr18Lx885698131	NonProperStrand	5	chr17	39848259	39848363	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-6.1691
chr17	39847847	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	88177342	88182533	antisense	Gm15893	.	ENSMUSG00000085246	ProperStrand	4	1	-3.7035
chr2	29136851	29136935	SINE	B3	B2	chr2B329136736	NonProperStrand	4	chr9	15322905	15322924	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-17.7963
chr9	44111190	44111231	protein_coding	Hinfp	intron	ENSMUSG00000032119	ProperStrand	28	chr17	36231279	36231313	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	1	-14.9050
chr5	33520344	33520465	LTR	MTA_Mm	MaLR	chr5MTA_Mm33520344	NonProperStrand	42	chr5	33520220	33520365	Simple_repeat	(CATATA)n	Simple_repeat	chr5(CATATA)n33520244	NonProperStrand	12	11	-inf
chr17	39847246	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	141122650	141122740	SINE	B2_Mm2	B2	chr4B2_Mm2141122630	ProperStrand	2	1	-6.5615
chr17	39847101	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	36594924	36594942	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	4	-3.7233
chr2	155399468	155408219	protein_coding-noncoding	Gss	utr3	ENSMUSG00000027610	ProperStrand	4	chr2	155396206	155408266	protein_coding	Gss	utr5	ENSMUSG00000027610	ProperStrand	15	3	-inf
chr8	95760143	95760243	DNA	URR1B	MER1_type	chr8URR1B95760078	NonProperStrand	5	chr8	95760558	95761345	DNA	URR1B	MER1_type	chr8URR1B95760563	ProperStrand	2	1	-23.2669
chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	178331206	178331393	Simple_repeat	(TTATA)n	Simple_repeat	chr1(TTATA)n178331198	NonProperStrand	2	1	-5.3533
chr3	68723845	68723935	protein_coding-noncoding	Ift80	utr3	ENSMUSG00000027778	NonProperStrand	1	chr3	68724210	68724310	protein_coding	Ift80	intron	ENSMUSG00000027778	NonProperStrand	3	1	-inf
chr14	69695567	69695657	LINE	L1_Mus3	L1	chr14L1_Mus369695464	NonProperStrand	5	chr8	105245192	105245292	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	2	-inf
chr9	78367766	78367801	SINE	B1_Mm	Alu	chr9B1_Mm78367670	NonProperStrand	55	chr6	84619304	84619339	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-9.9827
chr8	103406624	103406724	LINE	Lx6	L1	chr8Lx6103406432	NonProperStrand	1	chr6	121172815	121172905	protein_coding	Tuba8	exon	ENSMUSG00000030137	NonProperStrand	1	1	-inf
chr13	6597965	6598751	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr7	27176222	27178772	protein_coding-noncoding	Nlrp9c	utr3	ENSMUSG00000040614	ProperStrand	2	1	-18.2335
chr4	151758101	151758201	protein_coding	Chd5	intron	ENSMUSG00000005045	NonProperStrand	82	chr4	151766960	151767050	protein_coding	Kcnab2	utr3	ENSMUSG00000028931	ProperStrand	216	3	-20.9032
chr15	81397335	81397435	LTR	ORR1C1	MaLR	chr15ORR1C181397083	ProperStrand	3	chr15	81397495	81397585	SINE	B3	B2	chr15B381397488	NonProperStrand	2	2	-inf
chr14	19278152	19278200	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr4	117153898	117154303	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-8.7705
chr1	88272139	88272239	LTR	RLTR15	ERVK	chr1RLTR1588271907	NonProperStrand	4	chr1	88272287	88272378	SINE	B3A	B2	chr1B3A88272250	ProperStrand	3	3	-inf
chr14	56301979	56302069	LTR	RMER6A	ERVK	chr14RMER6A56301901	NonProperStrand	1	chr14	56301845	56301945	SINE	B3	B2	chr14B356301839	ProperStrand	1	1	-inf
chr9	31311132	31311222	LINE	L1_Mur2	L1	chr9L1_Mur231311086	ProperStrand	1	chr9	31311211	31311311	LTR	RLTR33	ERVK	chr9RLTR3331311224	NonProperStrand	1	1	-inf
chr12	76782963	76783053	SINE	B1_Mus1	Alu	chr12B1_Mus176782969	NonProperStrand	2	chr11	115509097	115509197	protein_coding	Grb2	intron	ENSMUSG00000059923	ProperStrand	75	2	-inf
chr3	98048949	98049049	LTR	RLTR23	ERV1	chr3RLTR2398048873	ProperStrand	1	chr3	98048793	98048883	LTR	RMER6A	ERVK	chr3RMER6A98048481	NonProperStrand	1	1	-inf
chr11	106249968	106250166	SINE	B2_Mm1t	B2	chr11B2_Mm1t106249913	ProperStrand	1	chr11	106250203	106250386	SINE	RSINE1	B4	chr11RSINE1106250151	ProperStrand	1	1	-inf
chr16	33057525	33058795	protein_coding-noncoding	Rpl35a	utr5	ENSMUSG00000060636	ProperStrand	14	chr7	127214672	127214690	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	147	1	-13.1868
chr6	3201470	3201537	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	93346683	93346704	protein_coding	Prickle1	intron	ENSMUSG00000036158	NonProperStrand	23	1	-4.6887
chr7	63925332	63925358	LINE	L1MC	L1	chr7L1MC63925242	ProperStrand	6	chr15	75803492	75803620	protein_coding	Zfp707	exon	ENSMUSG00000034429	NonProperStrand	12	1	-inf
chr4	134752596	134752696	SINE	B4A	B4	chr4B4A134752524	NonProperStrand	3	chr4	134752761	134752851	SINE	RSINE1	B4	chr4RSINE1134752740	NonProperStrand	3	3	-inf
chr17	39847244	39847344	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	31483104	31483194	SINE	ID_B1	B4	chr2ID_B131482980	NonProperStrand	2	1	-6.5615
chr14	77070261	77070346	LTR	MLT1A	MaLR	chr14MLT1A77070047	NonProperStrand	1	chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	48165555	48165656	SINE	RSINE1	B4	chr9RSINE148165492	ProperStrand	2	chr9	123461957	123461988	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr17	39847822	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	73590679	73590711	protein_coding	Lrrc9	intron	ENSMUSG00000021090	ProperStrand	9	2	-3.9821
chr3	135605137	135605156	SINE	RSINE1	B4	chr3RSINE1135605065	NonProperStrand	8	chr15	95978858	95978915	lincRNA	2610037D02Rik	intron	ENSMUSG00000086809	NonProperStrand	18	1	-18.5830
chr12	36122110	36122184	DNA	Charlie1a	MER1_type	chr12Charlie1a36121265	NonProperStrand	1	chr12	36123553	36123633	LINE	Lx4B	L1	chr12Lx4B36123255	ProperStrand	1	1	-inf
chrX	37983658	37983675	LINE	L1_Mus4	L1	chrXL1_Mus437982715	NonProperStrand	2	chr2	5379291	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chrX	71366638	71366738	LINE	L1MB3	L1	chrXL1MB371366631	NonProperStrand	1	chrX	71366501	71366591	LTR	MTD	MaLR	chrXMTD71366359	ProperStrand	1	1	-inf
chr17	47168646	47168745	LTR	MYSERV-int	ERVK	chr17MYSERV-int47168446	NonProperStrand	3	chr17	47152622	47152648	LTR	MYSERV6-int	ERVK	chr17MYSERV6-int47151940	NonProperStrand	2	1	-20.2824
chr1	30939934	30940024	LTR	MTD	MaLR	chr1MTD30939890	ProperStrand	1	chr1	30937644	30937744	LTR	RMER19C	ERVK	chr1RMER19C30937559	ProperStrand	1	1	-inf
chr11	79993133	79993155	SINE	B1_Mur4	Alu	chr11B1_Mur479993078	ProperStrand	1	chr11	79993328	79993360	SINE	B2_Mm2	B2	chr11B2_Mm279993224	ProperStrand	6	1	-inf
chr11	78183057	78183124	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr9	40803630	40803666	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-6.5277
chr17	39846411	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	139676052	139676116	LTR	MTE2b	MaLR	chrXMTE2b139676018	NonProperStrand	1	1	-inf
chr14	120314738	120314838	LTR	ORR1D1	MaLR	chr14ORR1D1120314755	ProperStrand	1	chr14	120314628	120314718	SINE	B3A	B2	chr14B3A120314613	NonProperStrand	1	1	-inf
chr1	132917430	132917501	protein_coding	Il10	intron	ENSMUSG00000016529	ProperStrand	2	chr9	123462115	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr18	75085030	75085130	LINE	L1Md_T	L1	chr18L1Md_T75084988	NonProperStrand	3	chr18	75084879	75084969	SINE	B2_Mm2	B2	chr18B2_Mm275084793	ProperStrand	2	2	-inf
chr5	69277252	69277342	LINE	L1Md_F	L1	chr5L1Md_F69274012	ProperStrand	1	chr13	28292846	28292946	LTR	IAPLTR2a	ERVK	chr13IAPLTR2a28292826	NonProperStrand	1	1	-inf
chr5	146261163	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	63579054	63579122	protein_coding-noncoding	Adam23	utr5	ENSMUSG00000025964	ProperStrand	31	1	-6.3617
chr2	102829380	102829436	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr10	41724952	41724998	protein_coding	Armc2	intron	ENSMUSG00000071324	ProperStrand	32	1	-11.1441
chr6	90734589	90734645	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	chr5	122559639	122559705	protein_coding	Ccdc63	intron	ENSMUSG00000043036	ProperStrand	6	1	-14.3539
chr17	45752118	45752210	SINE	B1F2	Alu	chr17B1F245752046	ProperStrand	2	chr2	5379307	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr16	47524019	47524109	LINE	L1_Mur3	L1	chr16L1_Mur347522726	NonProperStrand	1	chr16	47524205	47524305	LINE	Lx7	L1	chr16Lx747524183	ProperStrand	1	1	-inf
chr11	15594212	15594269	LINE	L1_Mus2	L1	chr11L1_Mus215592487	NonProperStrand	1	chr9	123461929	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	101748378	101748395	protein_coding	Ttc7b	intron	ENSMUSG00000033530	ProperStrand	10	chr9	120940690	120940792	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-12.7949
chr10	122063768	122063818	LTR	RMER17D	ERVK	chr10RMER17D122063630	NonProperStrand	1	chr17	39847444	39847480	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	114406165	114406210	protein_coding	Hrh1	intron	ENSMUSG00000053004	ProperStrand	41	chr10	127229571	127229669	protein_coding	Rdh9	utr3	ENSMUSG00000056148	NonProperStrand	6	3	-inf
chr14	31792210	31792295	protein_coding	Nek4	intron	ENSMUSG00000021918	NonProperStrand	10	chr13	97190548	97190601	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.7312
chr15	64014834	64014873	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr13	12376841	12376860	protein_coding	Actn2	intron	ENSMUSG00000052374	NonProperStrand	37	1	-9.6189
chr5	115255626	115255691	protein_coding	Ankrd13a	utr3	ENSMUSG00000041870	NonProperStrand	64	chr10	128548709	128548801	protein_coding	Olfr769	exon	ENSMUSG00000042801	ProperStrand	18	1	-14.3397
chrX	79918466	79918483	LINE	L1Md_F2	L1	chrXL1Md_F279917686	NonProperStrand	4	chr15	65787137	65815354	protein_coding	Hhla1	intron	ENSMUSG00000072511	NonProperStrand	11	2	-inf
chr10	127336474	127336545	protein_coding	Sdr9c7	intron	ENSMUSG00000040127	NonProperStrand	24	chr12	54023765	54023849	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-11.4822
chr11	116919073	116919163	LTR	MLT1C	MaLR	chr11MLT1C116918879	NonProperStrand	2	chr11	116919165	116919265	LTR	MTC	MaLR	chr11MTC116919165	ProperStrand	2	2	-inf
chr1	110457789	110457889	LINE	Lx2A1	L1	chr1Lx2A1110457315	NonProperStrand	1	chr1	110458040	110458130	LINE	Lx4B	L1	chr1Lx4B110457946	NonProperStrand	1	1	-inf
chr2	22744875	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	65201724	65201773	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-5.8609
chr8	59919126	59919216	LINE	Lx2B	L1	chr8Lx2B59919147	NonProperStrand	1	chr8	59918890	59918990	SINE	B1_Mus1	Alu	chr8B1_Mus159918815	NonProperStrand	1	1	-inf
chr7	80035639	80035671	Other	RMER1C	Other	chr7RMER1C80035435	ProperStrand	6	chr14	20852088	20852110	SINE	B1_Mur2	Alu	chr14B1_Mur220852003	ProperStrand	1	1	-inf
chr17	39848600	39848641	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	180911210	180911295	SINE	B4	B4	chr2B4180911166	NonProperStrand	3	2	-13.0806
chr8	120402665	120402708	LTR	MER31B	ERV1	chr8MER31B120402636	NonProperStrand	1	chr19	4888518	4888551	protein_coding	Bbs1	utr3	ENSMUSG00000006464	NonProperStrand	2	1	-inf
chr19	8723992	8724063	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr17	39847513	39847982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	12	-14.6745
chr12	108179658	108179679	LTR	MTD	MaLR	chr12MTD108179440	NonProperStrand	1	chr17	39846438	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	25224221	25224616	LTR	MTB	MaLR	chr2MTB25224229	NonProperStrand	2	chr5	110105210	110105229	protein_coding	5430403G16Rik	exon	ENSMUSG00000072763	NonProperStrand	10	1	-20.4467
chr7	126931014	126931087	protein_coding-noncoding	Eri2	utr3	ENSMUSG00000030929	NonProperStrand	1	chr7	126936378	126936426	protein_coding	Eri2	intron	ENSMUSG00000030929	NonProperStrand	2	1	-inf
chr11	12417065	12417162	LINE	Lx3_Mus	L1	chr11Lx3_Mus12416985	ProperStrand	9	chr9	123461959	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr4	14810337	14810452	protein_coding	Tmem55a	intron	ENSMUSG00000028221	NonProperStrand	17	chr7	141178267	141178303	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-12.3691
chr5	146261139	146261182	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	97206767	97206852	protein_coding	Gpr179	intron	ENSMUSG00000070337	ProperStrand	22	1	-7.0496
chr14	27070554	27070644	LTR	RLTR1B	ERV1	chr14RLTR1B27070117	ProperStrand	1	chr14	27070659	27070759	Simple_repeat	(TTCC)n	Simple_repeat	chr14(TTCC)n27070621	ProperStrand	1	1	-inf
chr12	51795685	51795708	LINE	L1_Mus3	L1	chr12L1_Mus351795035	ProperStrand	1	chr17	39846836	39846869	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	3201473	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	91625343	91638044	protein_coding	Gart	intron	ENSMUSG00000022962	ProperStrand	101	3	-5.5314
chr2	19540275	19540292	LINE	L1_Mus3	L1	chr2L1_Mus319539850	ProperStrand	2	chr5	115133702	115133830	protein_coding	Gltp	intron	ENSMUSG00000011884	ProperStrand	20	1	-20.4416
chr11	115820560	115820671	protein_coding	Sap30bp	intron	ENSMUSG00000020755	ProperStrand	28	chr18	51289857	51289873	protein_coding	Prr16	intron	ENSMUSG00000073565	ProperStrand	10	1	-17.2544
chr17	39848505	39848554	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	12922635	12922731	LINE	L1Md_T	L1	chr7L1Md_T12921579	ProperStrand	21	1	-3.5346
chr4	56852483	56852541	protein_coding-noncoding	Ctnnal1	utr3	ENSMUSG00000038816	ProperStrand	4	chr4	56852246	56852342	protein_coding	Ctnnal1	intron	ENSMUSG00000038816	ProperStrand	58	1	-17.7711
chr17	39848631	39848680	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	137611316	137611333	protein_coding	Muc3	exon	ENSMUSG00000037390	ProperStrand	11	1	-4.7901
chr5	72865513	72865613	protein_coding	Corin	intron	ENSMUSG00000005220	ProperStrand	23	chr4	57808674	57808764	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	1	-12.4746
chr9	5449610	5449710	SINE	ID_B1	B4	chr9ID_B15449609	ProperStrand	1	chr9	29069657	29069747	protein_coding	Ntm	intron	ENSMUSG00000059974	NonProperStrand	29	1	-inf
chr17	39847447	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	98670394	98670410	protein_coding	Mll2	exon	ENSMUSG00000048154	ProperStrand	2	1	-5.4040
chr9	100956611	100956670	SINE	B2_Mm2	B2	chr9B2_Mm2100956533	NonProperStrand	1	chr4	132212161	132212178	protein_coding	Eya3	intron	ENSMUSG00000028886	ProperStrand	7	1	-inf
chr4	108838170	108838260	protein_coding	Osbpl9	intron	ENSMUSG00000028559	NonProperStrand	31	chr4	126201668	126201768	pseudogene	Gm12934	.	ENSMUSG00000082888	ProperStrand	2	1	-20.3967
chr7	81971631	81971650	LTR	LTR88b	Gypsy?	chr7LTR88b81971545	ProperStrand	1	chr7	25625040	25625107	processed_transcript	Gm5893	.	ENSMUSG00000011350	ProperStrand	7	1	-inf
chr8	72151293	72151326	LINE	Lx	L1	chr8Lx72150141	NonProperStrand	8	chr10	42226368	42226411	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	1	-14.0063
chr10	52314203	52314230	LINE	Lx3C	L1	chr10Lx3C52313993	ProperStrand	2	chr17	39847844	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39845353	39845461	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr14	96592576	96592595	protein_coding	Klhl1	intron	ENSMUSG00000022076	ProperStrand	12	1	-5.2442
chr4	22376838	22376928	LINE	L1_Mus1	L1	chr4L1_Mus122376774	ProperStrand	4	chr4	22376949	22377049	LINE	L1_Mus3	L1	chr4L1_Mus322376917	NonProperStrand	2	2	-inf
chr17	39846068	39846109	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr6	87845548	87845718	protein_coding-noncoding	Copg	utr5	ENSMUSG00000030058	NonProperStrand	26	1	-3.4481
chr16	23108957	23109019	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr15	96232858	96232874	protein_coding	Arid2	utr3	ENSMUSG00000033237	ProperStrand	28	1	-11.4502
chr15	102475444	102475505	SINE	RSINE1	B4	chr15RSINE1102475391	NonProperStrand	1	chr7	116235064	116235130	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n116234891	NonProperStrand	2	1	-inf
chr10	61266321	61266427	LINE	Lx8	L1	chr10Lx861266258	ProperStrand	2	chr17	39847257	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr7	140041223	140041240	protein_coding	Mettl10	intron	ENSMUSG00000030960	NonProperStrand	3	chr11	23281435	23282579	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-16.5211
chr15	89370927	89371127	protein_coding	Shank3	intron	ENSMUSG00000022623	ProperStrand	86	chr7	64872441	64872498	protein_coding	Gabrb3	intron	ENSMUSG00000033676	NonProperStrand	14	1	-14.2620
chr17	4203232	4203332	LTR	RLTR14	ERV1	chr17RLTR144203003	ProperStrand	1	chr17	4203470	4203560	SINE	B3	B2	chr17B34203358	ProperStrand	1	1	-inf
chr7	29933983	29934083	protein_coding-noncoding	Rasgrp4	utr5	ENSMUSG00000030589	NonProperStrand	6	chr7	29934084	29934174	protein_coding	Rasgrp4	exon	ENSMUSG00000030589	NonProperStrand	5	1	-inf
chr12	86761661	86761679	Low_complexity	CT-rich	Low_complexity	chr12CT-rich86761656	ProperStrand	1	chr8	48496261	48496392	lincRNA	4930448N21Rik	intron	ENSMUSG00000086634	ProperStrand	141	1	-inf
chr4	17242084	17242174	LINE	Lx5	L1	chr4Lx517241969	ProperStrand	1	chr4	17241868	17241968	SINE	B1_Mus1	Alu	chr4B1_Mus117241858	ProperStrand	1	1	-inf
chr17	39847440	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	108939320	108939346	SINE	B4	B4	chr11B4108939269	NonProperStrand	1	1	-inf
chr6	134739751	134739851	protein_coding	Dusp16	intron	ENSMUSG00000030203	ProperStrand	47	chr9	36723805	36723895	protein_coding	Pknox2	intron	ENSMUSG00000035934	ProperStrand	37	1	-13.4933
chr11	5788605	5791824	SINE	B2_Mm1a	B2	chr11B2_Mm1a5788554	NonProperStrand	2	chr17	35988735	35988795	protein_coding	Mdc1	intron	ENSMUSG00000061607	ProperStrand	27	1	-21.9988
chr11	97988921	97988975	protein_coding	Fbxl20	intron	ENSMUSG00000020883	ProperStrand	47	chr19	27948169	27948248	protein_coding	Rfx3	intron	ENSMUSG00000040929	ProperStrand	67	1	-12.2929
chr7	16351179	16351279	SINE	B1_Mm	Alu	chr7B1_Mm16351103	ProperStrand	2	chr7	16351261	16351351	SINE	B1_Mus2	Alu	chr7B1_Mus216351280	NonProperStrand	2	2	-inf
mmu-miR-291a-3p	1	22	miRNA	mmu-miR-291a-3p	.	mmu-miR-291a-3p	ProperStrand	3	chr5	93270931	93270993	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	1	-16.3279
chr18	87154609	87154709	LINE	L1_Mur2	L1	chr18L1_Mur287154458	ProperStrand	1	chr9	19657694	19657784	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr14	26631232	26631322	LTR	RLTR17	ERVK	chr14RLTR1726631176	NonProperStrand	1	chr14	26631070	26631170	SINE	B2_Mm2	B2	chr14B2_Mm226630999	NonProperStrand	1	1	-inf
chr12	99645574	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-10.3473
chrX	151857001	151857101	LINE	Lx7	L1	chrXLx7151857022	ProperStrand	1	chrX	151856916	151857006	LINE	Lx8	L1	chrXLx8151856839	NonProperStrand	1	1	-inf
chr1	39937931	39937966	LINE	L1_Mur3	L1	chr1L1_Mur339937677	ProperStrand	2	chr2	37586277	37586346	SINE	B1_Mus2	Alu	chr2B1_Mus237586274	ProperStrand	1	1	-inf
chr12	78350926	78351011	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr1	52139229	52139288	protein_coding	Stat4	intron	ENSMUSG00000062939	ProperStrand	24	1	-7.7239
chr3	133368259	133368349	LINE	L1_Mus4	L1	chr3L1_Mus4133363845	NonProperStrand	1	chr3	118706096	118706196	protein_coding	Dpyd	intron	ENSMUSG00000033308	ProperStrand	20	1	-inf
chr18	10627817	10627853	protein_coding	Snrpd1	exon	ENSMUSG00000002477	ProperStrand	8	chr9	123461931	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr15	55234188	55234234	protein_coding	Col14a1	intron	ENSMUSG00000022371	ProperStrand	77	chr9	55162998	55163051	protein_coding	Nrg4	intron	ENSMUSG00000032311	NonProperStrand	23	1	-13.4661
chr5	113870625	113870732	LTR	MLT1B	MaLR	chr5MLT1B113870604	ProperStrand	1	chr19	5802129	5802165	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr10	81650919	81651005	antisense	Gm15608	.	ENSMUSG00000087481	ProperStrand	10	chr2	73349662	73349683	protein_coding	Wipf1	intron	ENSMUSG00000075284	ProperStrand	9	1	-20.1232
chr19	5801877	5801967	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	29732829	29732929	protein_coding	Eml6	intron	ENSMUSG00000044072	NonProperStrand	99	2	-5.9521
chr7	29651628	29651718	SINE	B1_Mm	Alu	chr7B1_Mm29651597	NonProperStrand	1	chr7	29651165	29651265	protein_coding	Lgals7	utr3	ENSMUSG00000053522	NonProperStrand	1	1	-inf
chr13	20153577	20153667	SINE	B3	B2	chr13B320153557	NonProperStrand	1	chr6	82486802	82486821	protein_coding	Tacr1	intron	ENSMUSG00000030043	ProperStrand	3	1	-inf
chr17	39846718	39846782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	80325632	80325727	LTR	IAPEz-int	ERVK	chr7IAPEz-int80320285	ProperStrand	4	1	-3.6552
chr4	43492784	43492809	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr10	122565879	122565974	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-8.1716
chr13	80161493	80161512	LINE	Lx2B	L1	chr13Lx2B80160594	ProperStrand	1	chr17	39846580	39846707	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	96121302	96121344	LTR	MMERVK10C-int	ERVK	chr3MMERVK10C-int96118741	NonProperStrand	4	chr14	121947485	121947593	protein_coding	Dock9	intron	ENSMUSG00000025558	NonProperStrand	173	3	-inf
chr1	178244462	178249304	LINE	L1MDa	L1	chr1L1MDa178247468	ProperStrand	2	chr1	178249351	178249451	LINE	L1MDa	L1	chr1L1MDa178248905	ProperStrand	4	2	-inf
chrX	150450163	150450235	LINE	L1_Mus1	L1	chrXL1_Mus1150448625	ProperStrand	1	chrX	150435624	150435711	LINE	Lx7	L1	chrXLx7150435282	ProperStrand	1	1	-inf
chr4	132386896	132386977	protein_coding	Ppp1r8	intron	ENSMUSG00000028882	ProperStrand	7	chr4	83436450	83441907	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	2	-20.1649
chrX	83041682	83041772	LINE	Lx8	L1	chrXLx883041647	NonProperStrand	1	chrX	83041414	83041514	LTR	RMER16	ERVK	chrXRMER1683041276	NonProperStrand	1	1	-inf
chr7	36769227	36769317	LINE	L1MB5	L1	chr7L1MB536768927	NonProperStrand	6	chr7	36769328	36769428	SINE	B3A	B2	chr7B3A36769321	NonProperStrand	6	6	-inf
chr1	52608995	52609095	SINE	ID4_	ID	chr1ID4_52608955	ProperStrand	1	chr1	52156555	52156645	protein_coding	Stat4	intron	ENSMUSG00000062939	ProperStrand	24	1	-inf
chr2	22744879	22744906	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	146953450	146953467	protein_coding	Ppfibp1	intron	ENSMUSG00000016487	ProperStrand	32	1	-8.0657
chr5	146261023	146261048	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	33219753	33219876	protein_coding	Osbpl11	intron	ENSMUSG00000022807	ProperStrand	29	1	-6.4948
chr17	39846818	39846840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	54722299	54722412	LTR	MLT1C	MaLR	chr3MLT1C54722293	NonProperStrand	1	1	-inf
chr6	35287463	35287550	LTR	MTC	MaLR	chr6MTC35287289	ProperStrand	2	chr17	5945638	5945664	protein_coding	Synj2	intron	ENSMUSG00000023805	ProperStrand	26	1	-20.6107
chr13	55658400	55658525	protein_coding	Fam193b	intron	ENSMUSG00000021495	NonProperStrand	28	chr16	11904068	11904090	protein_coding	Cpped1	intron	ENSMUSG00000065979	ProperStrand	72	1	-13.1992
chr7	67642257	67642347	LINE	L1_Mus3	L1	chr7L1_Mus367642057	NonProperStrand	1	chr7	67641762	67641862	LINE	Lx3_Mus	L1	chr7Lx3_Mus67640785	NonProperStrand	1	1	-inf
chr17	45439347	45439451	SINE	B4A	B4	chr17B4A45439325	ProperStrand	1	chr7	28351505	28351548	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-inf
chr15	34442772	34443058	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	chr13	97190596	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.1250
chr9	123461957	123462108	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	87877247	87877312	protein_coding	Ttc24	intron	ENSMUSG00000051036	ProperStrand	6	1	-5.4370
chr17	39846749	39846814	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	110671467	110671522	protein_coding	Myl3	intron	ENSMUSG00000059741	ProperStrand	4	1	-3.6552
chr8	50609179	50609279	LTR	MTA_Mm	MaLR	chr8MTA_Mm50609151	ProperStrand	1	chr8	50609077	50609167	Low_complexity	CT-rich	Low_complexity	chr8CT-rich50609001	ProperStrand	1	1	-inf
chr17	39847182	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	134472807	134472826	LTR	ORR1D2	MaLR	chr4ORR1D2134472534	NonProperStrand	6	1	-3.9545
chr14	12107126	12107226	LTR	LTR33A	ERVL	chr14LTR33A12106854	NonProperStrand	1	chr17	39847477	39847567	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	64559764	64559801	DNA	Tigger1	MER2_type	chr1Tigger164559341	NonProperStrand	1	chr17	46720343	46720359	lincRNA	Gm16736	intron	ENSMUSG00000086673	ProperStrand	89	1	-inf
chr6	56778393	56778428	LINE	Lx3C	L1	chr6Lx3C56777166	NonProperStrand	1	chr3	94741789	94741898	protein_coding-noncoding	Selenbp1	utr5	ENSMUSG00000068874	NonProperStrand	1	1	-inf
chr17	39847152	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	58109612	58109686	SINE	B3	B2	chr11B358109611	ProperStrand	4	1	-4.8204
chr17	39848190	39848412	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	43492902	43492953	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	2	-4.0770
chr5	135160443	135160533	protein_coding	Limk1	intron	ENSMUSG00000029674	NonProperStrand	69	chr9	103353557	103353657	protein_coding	Bfsp2	intron	ENSMUSG00000032556	ProperStrand	72	4	-inf
chr12	59040485	59040510	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr7	113553729	113553825	LINE	L1Md_T	L1	chr7L1Md_T113553689	NonProperStrand	1	1	-inf
chr13	112578181	112578271	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr4	139587296	139587396	protein_coding	Igsf21	intron	ENSMUSG00000040972	ProperStrand	9	1	-7.9978
chr5	33512228	33512249	DNA	Charlie25	MER1_type	chr5Charlie2533512136	ProperStrand	2	chr5	33511308	33511446	LINE	L1MC3	L1	chr5L1MC333510876	NonProperStrand	69	2	-inf
chr14	61205588	61205688	LTR	MTD	MaLR	chr14MTD61205568	ProperStrand	1	chr14	61205461	61205551	LTR	RMER5	ERV1	chr14RMER561205446	NonProperStrand	1	1	-inf
chr11	119786901	119786945	SINE	B1_Mm	Alu	chr11B1_Mm119786874	NonProperStrand	1	chr11	119787278	119787352	SINE	B1_Mur2	Alu	chr11B1_Mur2119787247	ProperStrand	1	1	-inf
chr17	47505923	47512541	protein_coding-noncoding	Mrps10	utr5	ENSMUSG00000034729	ProperStrand	6	chr17	47505842	47512422	protein_coding	Mrps10	utr5	ENSMUSG00000034729	ProperStrand	8	4	-inf
chr6	49713877	49713977	LINE	L1MEc	L1	chr6L1MEc49713368	ProperStrand	1	chr6	49714126	49714216	SINE	B3	B2	chr6B349714014	ProperStrand	1	1	-inf
chr10	116566642	116566732	protein_coding	Frs2	intron	ENSMUSG00000020170	ProperStrand	47	chr19	7208356	7208456	protein_coding	Macrod1	intron	ENSMUSG00000036278	NonProperStrand	109	1	-11.3152
chr11	105025816	105025906	LTR	RLTR22_Mur	ERVK	chr11RLTR22_Mur105024932	NonProperStrand	1	chr11	105026073	105026173	pseudogene	Gm11620	.	ENSMUSG00000081965	NonProperStrand	1	1	-inf
chr6	117918554	117918644	LINE	Lx2	L1	chr6Lx2117917912	NonProperStrand	2	chr6	117918696	117918796	LTR	MTC	MaLR	chr6MTC117918677	NonProperStrand	1	1	-inf
chr17	39848426	39848473	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	59543706	59543723	protein_coding	Fzd7	utr3	ENSMUSG00000041075	NonProperStrand	8	1	-5.1688
chr6	122713500	122713552	protein_coding	Slc2a3	intron	ENSMUSG00000003153	NonProperStrand	31	chr14	33967734	33967794	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-12.1394
chr18	72588377	72588477	LINE	Lx2	L1	chr18Lx272588394	ProperStrand	1	chr18	72588239	72588329	LINE	Lx6	L1	chr18Lx672587992	ProperStrand	1	1	-inf
chr11	3135121	3135180	protein_coding	Eif4enif1	intron	ENSMUSG00000020454	ProperStrand	62	chr5	132822442	132822493	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-7.1424
chr2	31610263	31610281	protein_coding	Abl1	intron	ENSMUSG00000026842	NonProperStrand	15	chr7	99479420	99479957	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-10.2335
chr19	7274089	7274106	protein_coding	Otub1	intron	ENSMUSG00000024767	ProperStrand	36	chr14	8046839	8046939	protein_coding	Gm3715	intron	ENSMUSG00000072731	NonProperStrand	4	1	-19.0994
chr19	32776176	32776264	protein_coding	Atad1	intron	ENSMUSG00000013662	NonProperStrand	33	chr2	33080370	33080418	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-9.4198
chr12	53677514	53677532	LINE	Lx9	L1	chr12Lx953676746	NonProperStrand	1	chr17	39848422	39848474	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr11	119775651	119775779	protein_coding	Chmp6	utr5	ENSMUSG00000025371	ProperStrand	7	chr15	55637952	55637970	protein_coding	Sntb1	intron	ENSMUSG00000060429	ProperStrand	29	1	-17.7846
chr14	49188258	49188315	Low_complexity	AT_rich	Low_complexity	chr14AT_rich49188265	ProperStrand	2	chr4	107013289	107013336	protein_coding	Yipf1	intron	ENSMUSG00000057375	ProperStrand	174	2	-inf
chr17	39847551	39847601	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	120963895	120968023	pseudogene	Gm11793	.	ENSMUSG00000082510	ProperStrand	4	1	-3.7035
chr5	146261070	146261096	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	47382812	47382865	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	ProperStrand	170	1	-3.1102
chr18	65568362	65568405	LINE	Lx	L1	chr18Lx65567172	ProperStrand	7	chr17	39847244	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr12	98253633	98253733	LINE	Lx2	L1	chr12Lx298253602	NonProperStrand	4	chr12	98253756	98253846	LINE	Lx3_Mus	L1	chr12Lx3_Mus98253779	ProperStrand	4	4	-inf
chr1	122357176	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr4	132310239	132310335	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	2	-10.6913
chr17	39846759	39846822	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	81643072	81643112	antisense	Gm15608	.	ENSMUSG00000087481	NonProperStrand	1	1	-inf
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	55000152	55000309	LTR	MTD	MaLR	chr1MTD55000089	NonProperStrand	11	1	-4.5229
chr8	124898092	124898192	processed_transcript	RP23-354I24.3	.	ENSMUSG00000093682	ProperStrand	9	chr8	124897893	124897983	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	3	-20.4200
chr10	70993214	70993304	Low_complexity	CT-rich	Low_complexity	chr10CT-rich70993132	ProperStrand	2	chr10	70993365	70993465	SINE	B4	B4	chr10B470993325	NonProperStrand	2	2	-inf
chr11	118030337	118030362	protein_coding	Cyth1	exon	ENSMUSG00000017132	NonProperStrand	253	chr14	11735258	11735357	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-5.0421
chr3	153676038	153676084	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr5	100660224	100660294	pseudogene	Gm8091	.	ENSMUSG00000085915	ProperStrand	92	1	-8.0123
chr11	58136868	58136958	lincRNA	1700047K16Rik	intron	ENSMUSG00000087347	NonProperStrand	5	chr11	58134803	58134903	protein_coding	Zfp672	intron	ENSMUSG00000049755	ProperStrand	5	4	-inf
chr4	153153110	153153156	LTR	MT2A	ERVL	chr4MT2A153153060	ProperStrand	1	chr18	69517531	69517627	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	1	-inf
chr17	4082897	4082987	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr1	113189554	113189654	LINE	Lx4A	L1	chr1Lx4A113189287	ProperStrand	1	1	-inf
chr6	85944704	85944766	SINE	B1_Mus1	Alu	chr6B1_Mus185944649	ProperStrand	1	chr2	121752011	121752093	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-inf
chr17	39847512	39847544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	142391715	142391839	protein_coding	Ccbl2	intron	ENSMUSG00000040213	NonProperStrand	11	2	-3.4077
chr7	127958879	127958969	SINE	RSINE1	B4	chr7RSINE1127958826	ProperStrand	1	chr2	112117781	112117881	protein_coding	Slc12a6	intron	ENSMUSG00000027130	NonProperStrand	3	1	-inf
chr10	76856600	76856657	protein_coding	Adarb1	intron	ENSMUSG00000020262	ProperStrand	178	chr11	33215866	33215967	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-5.3021
chr6	115037442	115037525	LTR	MTC	MaLR	chr6MTC115037386	NonProperStrand	1	chr9	123461835	123461907	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	72665439	72665539	protein_coding	Pcdh15	intron	ENSMUSG00000052613	ProperStrand	94	chr10	72665352	72665442	pseudogene	Gm5778	.	ENSMUSG00000091825	ProperStrand	4	1	-16.8397
chr1	50386347	50386389	LINE	L1VL4	L1	chr1L1VL450385541	ProperStrand	4	chr17	39847558	39847590	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	4	-inf
chr7	34367636	34367726	LINE	L1_Mus1	L1	chr7L1_Mus134362319	NonProperStrand	5	chr1	131378256	131378356	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-14.3426
chr2	121770817	121770955	LTR	ORR1A0-int	MaLR	chr2ORR1A0-int121770537	NonProperStrand	1	chr2	121770390	121770411	LTR	ORR1A0	MaLR	chr2ORR1A0121770191	NonProperStrand	2	1	-inf
chr1	73046419	73046519	LINE	L1MA4	L1	chr1L1MA473046373	NonProperStrand	1	chr1	73045953	73046043	LTR	RMER20B	ERVK	chr1RMER20B73045755	NonProperStrand	1	1	-inf
chr8	84993453	84993642	DNA	Charlie1	MER1_type	chr8Charlie184992897	ProperStrand	1	chr4	117288317	117288398	protein_coding	Eri3	intron	ENSMUSG00000033423	NonProperStrand	110	1	-inf
chr3	130159699	130159716	protein_coding	Col25a1	intron	ENSMUSG00000058897	NonProperStrand	112	chr4	134701074	134701195	protein_coding	Runx3	intron	ENSMUSG00000070691	NonProperStrand	20	1	-12.9978
chr9	35560887	35560988	LINE	L1Md_F3	L1	chr9L1Md_F335558938	ProperStrand	5	chr17	39846899	39846931	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr13	55535938	55536029	LTR	RLTR10-int	ERVK	chr13RLTR10-int55535938	ProperStrand	2	chr9	123461966	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr1	191999005	191999091	antisense	Gm17566	.	ENSMUSG00000079045	NonProperStrand	1	chr13	37977898	37977929	protein_coding	Rreb1	intron	ENSMUSG00000039087	NonProperStrand	39	1	-inf
chr10	33222961	33222977	LINE	L1Md_T	L1	chr10L1Md_T33222624	ProperStrand	1	chr15	77282794	77282941	processed_transcript	4930571N24Rik	.	ENSMUSG00000086467	NonProperStrand	43	1	-inf
chr1	162724851	162740406	LINE	L1MC4	L1	chr1L1MC4162730508	ProperStrand	5	chr1	162740401	162740491	LINE	L1MC4	L1	chr1L1MC4162740242	ProperStrand	13	5	-inf
chr8	69971989	69972110	LTR	RLTR13C2	ERVK	chr8RLTR13C269971647	NonProperStrand	2	chr8	69960205	69960230	LTR	RMER13A	ERVK	chr8RMER13A69959458	NonProperStrand	4	1	-22.1285
chr8	40436740	40436795	LINE	L1MA5	L1	chr8L1MA540436484	ProperStrand	1	chr5	67314255	67314300	protein_coding	Limch1	intron	ENSMUSG00000037736	ProperStrand	57	1	-inf
chr7	84371604	84371623	LTR	RMER17B	ERVK	chr7RMER17B84371264	ProperStrand	1	chr2	69945073	69948486	protein_coding	Myo3b	intron	ENSMUSG00000042064	ProperStrand	45	1	-inf
chr17	39846458	39846505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	49012957	49013063	SINE	B3A	B2	chr9B3A49012947	NonProperStrand	1	1	-inf
chr15	38047078	38047585	LTR	RLTR28	ERVL	chr15RLTR2838047303	ProperStrand	5	chr9	123461822	123461883	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr10	40258471	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	122123773	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	4	-8.2476
chrX	37084025	37085149	LINE	Lx3C	L1	chrXLx3C37083989	ProperStrand	4	chr9	123461813	123461992	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-10.7746
chr2	5379274	5379344	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr2	71893692	71897648	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	2	-5.1627
chr10	85144795	85144871	LTR	RMER13B	ERVK	chr10RMER13B85144811	NonProperStrand	2	chr10	85134519	85134600	LTR	RMER19C	ERVK	chr10RMER19C85134259	NonProperStrand	2	2	-inf
chr1	134630700	134630751	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr7	25333789	25333864	protein_coding	Xrcc1	intron	ENSMUSG00000051768	ProperStrand	67	1	-9.1695
chr15	82194934	82196169	LTR	MMVL30-int	ERV1	chr15MMVL30-int82194861	ProperStrand	22	chr15	82192340	82194100	LTR	RLTR6-int	ERV1	chr15RLTR6-int82193631	ProperStrand	5	3	-inf
chr9	118674951	118675007	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chrX	84420467	84420527	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	ProperStrand	52	1	-6.2531
chr6	49236470	49236586	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr2	130279499	130279535	protein_coding	Ptpra	intron	ENSMUSG00000027303	NonProperStrand	8	1	-13.4664
chr8	72349687	72349751	protein_coding	Lpar2	intron	ENSMUSG00000031861	NonProperStrand	35	chr4	107151506	107151573	protein_coding	Glis1	intron	ENSMUSG00000034762	NonProperStrand	44	1	-13.7389
chr9	16725278	16725378	LINE	Lx4A	L1	chr9Lx4A16722827	ProperStrand	1	chr9	16725517	16725607	LINE	Lx4A	L1	chr9Lx4A16725292	ProperStrand	1	1	-inf
chr17	88632128	88632228	LINE	L1_Mur1	L1	chr17L1_Mur188632095	ProperStrand	1	chr17	88632025	88632115	SINE	B4A	B4	chr17B4A88631882	ProperStrand	1	1	-inf
chr10	75931823	75932473	protein_coding	Mcm3ap	intron	ENSMUSG00000001150	NonProperStrand	17	chr10	75928283	75931776	protein_coding	Ybey	intron	ENSMUSG00000033126	ProperStrand	25	2	-21.6364
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	63381230	63381337	lincRNA	Gm16759	intron	ENSMUSG00000086539	ProperStrand	4	1	-3.7035
chr12	111103719	111103780	LINE	L1_Mur3	L1	chr12L1_Mur3111103493	NonProperStrand	1	chr17	39846987	39847009	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	63509946	63510006	protein_coding	Fancc	intron	ENSMUSG00000021461	ProperStrand	182	chr4	53860726	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-7.2137
chr7	121798076	121798176	LINE	L1M5	L1	chr7L1M5121797878	ProperStrand	1	chr7	121797700	121797790	LINE	L1MC	L1	chr7L1MC121797566	ProperStrand	1	1	-inf
chr17	4082133	4082233	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr1	118096804	118096894	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	3	-14.0519
chr5	121976937	121977027	protein_coding-noncoding	Mapkapk5	utr3	ENSMUSG00000029454	ProperStrand	9	chr5	121976761	121976861	protein_coding	Mapkapk5	exon	ENSMUSG00000029454	ProperStrand	29	2	-19.8906
chr2	177478984	177479029	LINE	L1VL1	L1	chr2L1VL1177476150	NonProperStrand	6	chr7	101942646	101942761	LINE	L1Md_A	L1	chr7L1Md_A101938104	NonProperStrand	5	1	-inf
chr16	35981614	35981644	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr7	13260925	13260941	protein_coding	Vmn2r55	intron	ENSMUSG00000091045	ProperStrand	10	1	-13.5533
chr1	113903996	113904025	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	16	chr9	47805558	47805648	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n47805448	ProperStrand	4	1	-inf
chr11	51556944	51557044	protein_coding-noncoding	Sec24a	utr3	ENSMUSG00000036391	ProperStrand	1	chr11	51557157	51557247	protein_coding	Sec24a	exon	ENSMUSG00000036391	ProperStrand	8	1	-inf
chrX	36850665	36850738	LINE	L1Md_T	L1	chrXL1Md_T36849719	NonProperStrand	2	chr17	39848310	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr5	125528229	125528319	protein_coding-noncoding	Ncor2	utr3	ENSMUSG00000029478	NonProperStrand	2	chr5	125528326	125528426	protein_coding	Ncor2	exon	ENSMUSG00000029478	NonProperStrand	39	2	-inf
chr17	28258639	28258684	SINE	B2_Mm2	B2	chr17B2_Mm228258598	NonProperStrand	1	chr17	28258055	28258110	SINE	B3	B2	chr17B328257931	ProperStrand	1	1	-inf
chr9	65650971	65651061	protein_coding	Zfp609	intron	ENSMUSG00000040524	ProperStrand	12	chr5	99022157	99022257	protein_coding	1700007G11Rik	intron	ENSMUSG00000057816	ProperStrand	13	1	-18.6827
chr9	19657730	19657758	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.1854
chr19	21794321	21794403	LINE	L1MDa	L1	chr19L1MDa21794243	NonProperStrand	1	chr19	21794666	21794700	LINE	L1MDa	L1	chr19L1MDa21794654	NonProperStrand	1	1	-inf
chr11	109011729	109011765	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	135700940	135700966	LTR	ORR1C1	MaLR	chr7ORR1C1135700946	NonProperStrand	10	2	-15.5253
chr4	117155775	117155847	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.1197
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr7	133081372	133081455	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.1083
chr11	97750789	97750843	lincRNA	Gm11630	intron	ENSMUSG00000086917	NonProperStrand	6	chr13	75905399	75905489	protein_coding	Ell2	intron	ENSMUSG00000001542	NonProperStrand	12	1	-inf
chr2	5379256	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr13	23576061	23576161	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	1	-5.4343
chr9	123461883	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	3410873	3410893	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	2	-5.0561
chr7	46575034	46575088	LINE	L1_Mur2	L1	chr7L1_Mur246574926	ProperStrand	3	chr11	102198852	102199045	SINE	B1_Mus2	Alu	chr11B1_Mus2102199008	NonProperStrand	1	1	-inf
chr3	22159563	22159663	LINE	Lx4A	L1	chr3Lx4A22159287	NonProperStrand	1	chr3	122598270	122598360	lincRNA	4933405D12Rik	intron	ENSMUSG00000086397	ProperStrand	31	1	-inf
chr16	76751550	76751640	LTR	MTEa	MaLR	chr16MTEa76751521	ProperStrand	1	chr16	76751952	76752052	LTR	RLTR31A_Mm	ERVK	chr16RLTR31A_Mm76751827	ProperStrand	1	1	-inf
chr4	44756137	44756227	SINE	B1_Mus2	Alu	chr4B1_Mus244756129	ProperStrand	2	chr4	44756303	44756403	SINE	RSINE1	B4	chr4RSINE144756288	ProperStrand	2	2	-inf
chrX	4136308	4136358	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr2	146278316	146278401	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	ProperStrand	101	1	-11.7444
chr13	11964745	11964865	protein_coding	Ryr2	intron	ENSMUSG00000021313	ProperStrand	81	chr7	65914246	65914281	protein_coding	Atp10a	exon	ENSMUSG00000025324	ProperStrand	84	1	-10.7424
chr3	146423188	146423231	protein_coding	Prkacb	intron	ENSMUSG00000005034	NonProperStrand	52	chr13	109277103	109277195	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-8.2664
chr9	123461897	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	58496850	58496923	protein_coding	Ppil3	intron	ENSMUSG00000026035	ProperStrand	12	1	-4.0248
chr17	39846449	39846495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	49012527	49012563	SINE	B2_Mm2	B2	chr9B2_Mm249012482	NonProperStrand	1	1	-inf
chr11	23714785	23714861	LINE	Lx3_Mus	L1	chr11Lx3_Mus23713975	ProperStrand	1	chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39846816	39846852	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	23848415	23848454	Low_complexity	AT_rich	Low_complexity	chr8AT_rich23848424	ProperStrand	1	1	-inf
chr2	29131710	29131810	Low_complexity	A-rich	Low_complexity	chr2A-rich29131710	ProperStrand	5	chr2	29131608	29131698	SINE	B1_Mur2	Alu	chr2B1_Mur229131566	ProperStrand	5	5	-inf
chr14	83481985	83482084	LINE	Lx9	L1	chr14Lx983481891	NonProperStrand	1	chr7	133119492	133119582	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr3	107664090	107664190	LTR	MLT1A0-int	MaLR	chr3MLT1A0-int107664069	NonProperStrand	1	chr3	107664290	107664380	Simple_repeat	(TC)n	Simple_repeat	chr3(TC)n107664298	NonProperStrand	1	1	-inf
chr11	5412483	5412583	LTR	MER31B	ERV1	chr11MER31B5412397	NonProperStrand	2	chr17	39847142	39847232	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr1	82427573	82427666	protein_coding	Rhbdd1	intron	ENSMUSG00000026142	ProperStrand	165	chr8	123103079	123103105	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	1	-7.4171
chr7	130735568	130735627	LINE	L1_Mur2	L1	chr7L1_Mur2130735538	NonProperStrand	1	chr17	39848330	39848369	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr11	78207228	78207321	LTR	MTB_Mm	MaLR	chr11MTB_Mm78206989	NonProperStrand	2	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-17.7690
chr7	84733331	84733421	LINE	L1MA4	L1	chr7L1MA484733313	NonProperStrand	1	chr7	84733107	84733207	LTR	MT2A	ERVL	chr7MT2A84732798	NonProperStrand	1	1	-inf
chrX	115178329	115178419	LINE	Lx2	L1	chrXLx2115177528	NonProperStrand	1	chr14	33967496	33967596	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-inf
chr17	39847228	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	42282887	42282972	SINE	B1F1	Alu	chr6B1F142282879	ProperStrand	1	1	-inf
chr7	107952520	107952610	protein_coding	Fam168a	intron	ENSMUSG00000029461	NonProperStrand	3	chr18	88870847	88887020	protein_coding	Socs6	intron	ENSMUSG00000056153	ProperStrand	33	1	-19.5231
chr8	69771333	69771386	LINE	L1_Mus1	L1	chr8L1_Mus169771245	ProperStrand	1	chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	24355325	24355415	LTR	RLTR14-int	ERV1	chr5RLTR14-int24355220	NonProperStrand	1	chr5	24354989	24355089	Simple_repeat	(TA)n	Simple_repeat	chr5(TA)n24354967	NonProperStrand	1	1	-inf
chr10	78442161	78442208	LINE	Lx2	L1	chr10Lx278440152	NonProperStrand	1	chr17	39847025	39847044	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	105171362	105178627	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	chr7	141984949	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-8.1426
chrX	19073618	19073718	LINE	L1Md_F2	L1	chrXL1Md_F219073583	NonProperStrand	1	chrX	19073359	19073449	LTR	MT2A	ERVL	chrXMT2A19073302	ProperStrand	1	1	-inf
chr2	167065015	167065079	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr11	116674158	116674218	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	93	1	-10.5382
chr1	55091092	55091162	LTR	ORR1B1	MaLR	chr1ORR1B155090732	ProperStrand	2	chr2	165130962	165130981	protein_coding	Elmo2	intron	ENSMUSG00000017670	NonProperStrand	1	1	-inf
chr17	23540920	23540990	LTR	RLTR21	ERVK	chr17RLTR2123540359	NonProperStrand	1	chr1	13140338	13140418	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	1	-inf
chr17	39847173	39847356	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	37481454	37481652	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	2	-3.0362
chr17	39846580	39846710	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	146335949	146335970	protein_coding	Samd13	intron	ENSMUSG00000048652	NonProperStrand	2	1	-5.3533
chr17	39842998	39843052	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr18	53933705	53933770	SINE	MIR	MIR	chr18MIR53933671	ProperStrand	1	1	-inf
chr1	63200604	63200670	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr4	119108867	119108923	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-7.2885
chr17	39848194	39848267	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	108338621	108338704	protein_coding	Fam69a	exon	ENSMUSG00000029270	NonProperStrand	13	1	-4.1930
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr7	19749397	19749423	protein_coding	Gipr	exon	ENSMUSG00000030406	ProperStrand	6	1	-16.6279
chr17	39848241	39848284	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	61332146	61332199	protein_coding	Epn2	utr3	ENSMUSG00000001036	ProperStrand	12	2	-7.3691
chr13	40753306	40753396	DNA	URR1B	MER1_type	chr13URR1B40753243	NonProperStrand	1	chr13	40753162	40753262	LINE	L1MA5	L1	chr13L1MA540753124	NonProperStrand	1	1	-inf
chr17	39847558	39847658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	104541198	104541288	pseudogene	Gm11662	.	ENSMUSG00000083748	ProperStrand	2	1	-5.4040
chr16	30339618	30339652	protein_coding	Atp13a3	intron	ENSMUSG00000022533	NonProperStrand	3	chr16	24503714	24503738	protein_coding	Lpp	intron	ENSMUSG00000033306	NonProperStrand	169	1	-16.3026
chr6	3201509	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	23629680	23629731	protein_coding	Klhl7	intron	ENSMUSG00000028986	NonProperStrand	38	1	-3.7289
chr7	47186392	47186492	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	chr14	33967712	33967802	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-13.6249
chr2	122011619	122011635	protein_coding	Patl2	intron	ENSMUSG00000027233	ProperStrand	5	chr9	118674950	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-11.1021
chr19	6333212	6333302	LTR	RMER5	ERV1	chr19RMER56333198	NonProperStrand	1	chr19	6333379	6333479	SINE	B1_Mur4	Alu	chr19B1_Mur46333372	ProperStrand	1	1	-inf
chr18	77157037	77157111	LINE	Lx7	L1	chr18Lx777156946	ProperStrand	2	chr18	77156823	77156849	SINE	B1_Mus2	Alu	chr18B1_Mus277156786	NonProperStrand	1	1	-inf
chr17	39847778	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	20827663	20827682	protein_coding	Ttr	intron	ENSMUSG00000061808	ProperStrand	1	1	-inf
chr13	53248030	53248093	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	chr5	125278928	125278953	protein_coding	Dnahc10	intron	ENSMUSG00000038011	ProperStrand	1	1	-inf
chr15	4843246	4843347	LTR	RMER19B	ERVK	chr15RMER19B4843261	ProperStrand	4	chr15	4843136	4843226	SINE	B2_Mm2	B2	chr15B2_Mm24843071	NonProperStrand	4	4	-inf
chr17	39848098	39848171	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	109012007	109012047	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	2	-3.1448
chr14	99047124	99047155	LTR	MER70B	ERVL	chr14MER70B99046746	ProperStrand	1	chr3	5579547	5579666	LTR	ORR1A2-int	MaLR	chr3ORR1A2-int5579562	NonProperStrand	1	1	-inf
chr11	116727130	116727219	protein_coding-noncoding	Mfsd11	utr3	ENSMUSG00000020818	ProperStrand	2	chr9	123461991	123462019	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr9	123462020	123462063	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	112905066	112905154	protein_coding	Dchs1	intron	ENSMUSG00000036862	NonProperStrand	19	1	-3.1531
chr17	47749823	47749913	protein_coding-noncoding	Med20	utr5	ENSMUSG00000092558	ProperStrand	21	chr17	47749915	47750015	protein_coding	Med20	exon	ENSMUSG00000092558	ProperStrand	41	1	-14.9217
chr17	39848162	39848269	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	63911915	63911964	LTR	RMER15-int	ERVL	chr7RMER15-int63911586	NonProperStrand	14	1	-4.0485
chr6	120354203	120354238	protein_coding	Kdm5a	intron	ENSMUSG00000030180	NonProperStrand	22	chr7	29779454	29779479	protein_coding	Map4k1	intron	ENSMUSG00000037337	ProperStrand	9	1	-18.0947
chr2	90763598	90763698	LTR	RLTR20C	ERVK	chr2RLTR20C90763570	ProperStrand	2	chr2	90763462	90763552	SINE	B1_Mus1	Alu	chr2B1_Mus190763457	NonProperStrand	2	2	-inf
chr17	87980893	87980983	LTR	RMER16-int	ERVK	chr17RMER16-int87980752	NonProperStrand	1	chr17	87981043	87981143	SINE	B1_Mm	Alu	chr17B1_Mm87980978	ProperStrand	1	1	-inf
chr6	98305537	98305627	DNA	Tigger7	MER2_type	chr6Tigger798305517	NonProperStrand	1	chr6	98305275	98305375	LTR	MTEa	MaLR	chr6MTEa98305162	ProperStrand	1	1	-inf
chr17	39847697	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	108665944	108666000	SINE	B2_Mm2	B2	chr6B2_Mm2108665940	NonProperStrand	1	1	-inf
chr17	71206832	71206862	antisense	RP23-85E24.1	.	ENSMUSG00000093514	ProperStrand	29	chr5	120626432	120626834	protein_coding	Rbm19	intron	ENSMUSG00000029594	ProperStrand	47	1	-13.9868
chr16	35981685	35981816	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr9	123461882	123462186	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	57	-inf
chr11	48181153	48181243	DNA	MER96B	hAT	chr11MER96B48181107	NonProperStrand	1	chr11	48181677	48181777	LINE	L1Md_A	L1	chr11L1Md_A48181304	ProperStrand	1	1	-inf
chr6	72754728	72754818	SINE	B1F2	Alu	chr6B1F272754729	NonProperStrand	1	chr6	72754386	72754420	SINE	B4A	B4	chr6B4A72754181	ProperStrand	7	1	-inf
chr6	88351012	88351092	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.5527
chr1	136364891	136364953	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr1	191553063	191553141	protein_coding	Ptpn14	intron	ENSMUSG00000026604	NonProperStrand	26	1	-12.0713
chr11	109011722	109011856	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	5	-5.6050
chr4	116610857	116610945	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	chr8	123421127	123421149	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-5.1870
chr15	99976291	99976321	protein_coding	Dip2b	intron	ENSMUSG00000023026	ProperStrand	60	chr4	24598824	24600188	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-10.9173
chr17	39846647	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	85088828	85088866	protein_coding	Abcg8	intron	ENSMUSG00000024254	NonProperStrand	5	1	-3.1907
chr13	97190561	97190601	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr10	61428541	61432138	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	2	-3.2037
chr11	97164955	97165035	SINE	B1_Mur1	Alu	chr11B1_Mur197164896	NonProperStrand	1	chr11	97187863	97187928	protein_coding	Mrpl45	intron	ENSMUSG00000018882	NonProperStrand	37	1	-inf
chr15	76399880	76399981	LTR	MTC	MaLR	chr15MTC76399907	ProperStrand	2	chr15	76399754	76399844	SINE	B1_Mus1	Alu	chr15B1_Mus176399759	ProperStrand	1	1	-inf
chr7	28564517	28564881	LINE	L1Md_F3	L1	chr7L1Md_F328564296	NonProperStrand	5	chr17	39847429	39847920	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-5.9065
chr12	99940860	99940930	protein_coding	Ptpn21	intron	ENSMUSG00000021009	NonProperStrand	77	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.0194
chr7	3567949	3568015	Low_complexity	A-rich	Low_complexity	chr7A-rich3567964	NonProperStrand	2	chr7	3569708	3569789	protein_coding	Ndufa3	intron	ENSMUSG00000035674	NonProperStrand	3	2	-inf
chr5	136424177	136424286	SINE	B1_Mm	Alu	chr5B1_Mm136424128	ProperStrand	1	chr6	3534771	3534791	protein_coding	Ccdc132	intron	ENSMUSG00000001376	ProperStrand	42	1	-inf
chr5	93157014	93157131	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.5807
chr13	87112996	87113086	LINE	L1_Mus3	L1	chr13L1_Mus387112938	NonProperStrand	1	chr13	87113189	87113289	LINE	L1_Mus3	L1	chr13L1_Mus387113202	NonProperStrand	1	1	-inf
chr2	160644124	160644226	protein_coding	Zhx3	intron	ENSMUSG00000035877	ProperStrand	62	chr9	9025839	9025891	protein_coding	Arhgap42	intron	ENSMUSG00000050730	ProperStrand	30	1	-13.3600
chr7	28950498	28950598	LTR	ORR1D2	MaLR	chr7ORR1D228950362	ProperStrand	2	chr7	34951880	34951970	protein_coding	Uba2	intron	ENSMUSG00000052997	ProperStrand	1	1	-inf
chr10	46972976	46973143	LINE	L1VL4	L1	chr10L1VL446972963	NonProperStrand	3	chr17	4082115	4082262	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	3	-inf
chr10	75937397	75937592	protein_coding	Mcm3ap	intron	ENSMUSG00000001150	ProperStrand	37	chr4	86141839	86141857	protein_coding	Fam154a	intron	ENSMUSG00000028492	NonProperStrand	2	1	-21.1015
chr11	20323196	20323301	SINE	B2_Mm2	B2	chr11B2_Mm220323168	NonProperStrand	1	chr13	62501217	62501246	SINE	B2_Mm1t	B2	chr13B2_Mm1t62501130	ProperStrand	1	1	-inf
chr15	24398965	24398984	LINE	Lx6	L1	chr15Lx624398934	NonProperStrand	1	chr17	39846462	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	71728908	71729028	protein_coding	Pdk1	intron	ENSMUSG00000006494	ProperStrand	8	chr17	56401836	56401874	protein_coding	Fem1a	utr3	ENSMUSG00000043683	ProperStrand	18	1	-18.5830
chr8	91630905	91630964	SINE	B1_Mur1	Alu	chr8B1_Mur191630875	NonProperStrand	1	chr8	91629228	91629297	Simple_repeat	(TTC)n	Simple_repeat	chr8(TTC)n91629174	ProperStrand	1	1	-inf
chr4	132844260	132844360	LINE	L1MC	L1	chr4L1MC132844282	NonProperStrand	1	chr4	132843959	132844049	SINE	PB1D10	Alu	chr4PB1D10132843929	NonProperStrand	1	1	-inf
chr8	73293465	73296657	protein_coding-noncoding	Pik3r2	utr3	ENSMUSG00000031834	ProperStrand	3	chr8	73293595	73296536	protein_coding	Pik3r2	intron	ENSMUSG00000031834	ProperStrand	31	3	-inf
chr12	40410725	40410815	DNA	MER45C	Tip100	chr12MER45C40410635	ProperStrand	6	chr4	85934788	85934888	protein_coding	Adamtsl1	intron	ENSMUSG00000066113	ProperStrand	23	1	-19.2656
chr17	50420127	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr12	111842845	111842944	protein_coding	Dync1h1	intron	ENSMUSG00000018707	NonProperStrand	26	1	-11.6361
chr11	120763400	120763595	protein_coding	Ccdc57	intron	ENSMUSG00000048445	NonProperStrand	71	chr17	27562598	27562771	protein_coding	Grm4	intron	ENSMUSG00000063239	NonProperStrand	125	3	-inf
chr4	149599166	149599307	LTR	MTD	MaLR	chr4MTD149599184	ProperStrand	3	chr4	149599029	149599178	SINE	B3	B2	chr4B3149599021	NonProperStrand	2	2	-inf
chr9	108256874	108256985	protein_coding	Usp4	intron	ENSMUSG00000032612	NonProperStrand	17	chr9	78478813	78478838	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-10.0571
chr1	161401444	161401534	LINE	L1MA4	L1	chr1L1MA4161401467	NonProperStrand	1	chr1	161401563	161401663	LINE	L1MA4	L1	chr1L1MA4161401564	NonProperStrand	1	1	-inf
chr17	39844034	39844076	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	1	-4.2218
chr10	75722304	75722404	protein_coding-noncoding	Dip2a	utr3	ENSMUSG00000020231	ProperStrand	1	chr10	75722397	75722487	protein_coding	Dip2a	intron	ENSMUSG00000020231	ProperStrand	98	1	-inf
chr19	33117126	33117198	LINE	L1MA5A	L1	chr19L1MA5A33115732	NonProperStrand	10	chr16	30356007	30356039	protein_coding	Atp13a3	intron	ENSMUSG00000022533	ProperStrand	59	1	-15.7342
chr11	62376862	62376962	LTR	MERVL_2A-int	ERVL	chr11MERVL_2A-int62376251	NonProperStrand	1	chr11	62377345	62377435	LTR	MT2A	ERVL	chr11MT2A62376980	NonProperStrand	1	1	-inf
chr10	47358392	47358492	LTR	IAPLTR2_Mm	ERVK	chr10IAPLTR2_Mm47358080	ProperStrand	1	chr10	47358608	47358698	LTR	ORR1B1	MaLR	chr10ORR1B147358503	ProperStrand	1	1	-inf
chr5	146260994	146261034	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	7771020	7772487	protein_coding	Porcn	utr3	ENSMUSG00000031169	NonProperStrand	13	1	-8.1236
chr9	43187950	43188050	LTR	MER21B	ERV1	chr9MER21B43187947	NonProperStrand	2	chr9	43188139	43188229	LTR	RMER21B	ERV1	chr9RMER21B43188088	NonProperStrand	2	2	-inf
chr1	132730465	132730531	protein_coding	Pigr	intron	ENSMUSG00000026417	NonProperStrand	52	chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	1	-12.9839
chr18	34898858	34898907	protein_coding	Cdc25c	intron	ENSMUSG00000044201	NonProperStrand	1	chr18	34897274	34897363	protein_coding	Gm3550	exon	ENSMUSG00000078240	ProperStrand	1	1	-inf
chr1	160058126	160058226	LINE	L1_Mur3	L1	chr1L1_Mur3160058146	ProperStrand	1	chr1	160058020	160058110	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n160058033	ProperStrand	1	1	-inf
chr16	4534041	4534162	protein_coding	Srl	intron	ENSMUSG00000022519	ProperStrand	96	chr5	66356455	66356492	protein_coding	Chrna9	intron	ENSMUSG00000029205	NonProperStrand	122	1	-9.6537
chr4	151961428	151961528	LTR	ORR1A2	MaLR	chr4ORR1A2151961390	NonProperStrand	6	chr4	151961319	151961409	SINE	B4A	B4	chr4B4A151961122	NonProperStrand	4	4	-inf
chr14	99087745	99087782	LINE	Lx9	L1	chr14Lx999087619	ProperStrand	4	chr12	80259288	80259315	protein_coding	Vti1b	intron	ENSMUSG00000021124	NonProperStrand	9	1	-inf
chr2	70962441	70962500	protein_coding	Cybrd1	intron	ENSMUSG00000027015	NonProperStrand	14	chr11	62098762	62098784	protein_coding	Ttc19	intron	ENSMUSG00000042298	NonProperStrand	1	1	-inf
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	10	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-11.5049
chr4	62534296	62534396	SINE	B4A	B4	chr4B4A62534288	ProperStrand	1	chr4	62534175	62534265	SINE	MIR	MIR	chr4MIR62534130	ProperStrand	1	1	-inf
chr17	39847659	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	56114261	56114331	protein_coding	Shd	intron	ENSMUSG00000039154	ProperStrand	1	1	-inf
chr2	4991044	4991171	LINE	L1Md_F2	L1	chr2L1Md_F24990750	ProperStrand	6	chr9	123462158	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr13	33835700	33835790	LINE	Lx2A1	L1	chr13Lx2A133835624	NonProperStrand	1	chr13	33835966	33836066	LTR	RLTR13D6	ERVK	chr13RLTR13D633835792	ProperStrand	1	1	-inf
chr10	31946012	31946112	LINE	Lx5	L1	chr10Lx531945830	NonProperStrand	1	chr10	31946291	31946381	LINE	Lx5	L1	chr10Lx531946272	NonProperStrand	1	1	-inf
chr11	77777814	77817647	protein_coding	Sez6	intron	ENSMUSG00000000632	ProperStrand	109	chr11	77799801	77824278	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	7	-inf
chr15	12549835	12549925	protein_coding	Pdzd2	intron	ENSMUSG00000022197	ProperStrand	76	chr3	83956759	83956859	protein_coding	Mnd1	intron	ENSMUSG00000033752	ProperStrand	41	1	-12.3164
chr17	39846750	39846810	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	91331150	91331220	LTR	RLTR11A2	ERVK	chr8RLTR11A291331083	ProperStrand	1	1	-inf
chr11	104267573	104267630	protein_coding	1700081L11Rik	intron	ENSMUSG00000018412	NonProperStrand	39	chr11	19982119	19982186	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	1	-10.6108
chr7	5409488	5409578	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	chr12	31016483	31016583	protein_coding	Sntg2	intron	ENSMUSG00000020672	NonProperStrand	9	1	-18.9138
chr10	29344464	29344584	LINE	L1Md_T	L1	chr10L1Md_T29339441	NonProperStrand	2	chr7	133002812	133002849	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	1	-16.3143
chr7	34927563	34927643	protein_coding-noncoding	Uba2	utr3	ENSMUSG00000052997	NonProperStrand	1	chr7	34928567	34928640	protein_coding	Uba2	intron	ENSMUSG00000052997	NonProperStrand	14	1	-inf
chr15	58949709	58949770	LINE	L1MA9	L1	chr15L1MA958949660	NonProperStrand	1	chr15	58949374	58949441	LINE	Lx8	L1	chr15Lx858949348	ProperStrand	1	1	-inf
chr5	59471000	59471052	LINE	L1_Mur3	L1	chr5L1_Mur359470674	ProperStrand	1	chr7	144436984	144437046	protein_coding	Ebf3	intron	ENSMUSG00000010476	ProperStrand	116	1	-inf
chr15	95880504	95880526	SINE	RSINE1	B4	chr15RSINE195880389	NonProperStrand	5	chr15	95883117	95883232	lincRNA	D030018L15Rik	exon	ENSMUSG00000078925	NonProperStrand	36	1	-18.3288
chr5	146261173	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	109558409	109558448	protein_coding	Vps4a	intron	ENSMUSG00000031913	NonProperStrand	17	1	-7.5728
chr6	81039763	81039853	LINE	Lx	L1	chr6Lx81038121	NonProperStrand	1	chr6	81040152	81040252	SINE	B3A	B2	chr6B3A81040173	ProperStrand	1	1	-inf
chr4	41308929	41309023	protein_coding	Ubap1	intron	ENSMUSG00000028437	NonProperStrand	9	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-9.8244
chr2	30487126	30487209	lincRNA	9330198N18Rik	intron	ENSMUSG00000086405	ProperStrand	16	chr5	124873042	124873115	protein_coding	Sbno1	intron	ENSMUSG00000038095	NonProperStrand	18	1	-17.2045
chr7	25465334	25465405	LTR	RLTR19C	ERVK	chr7RLTR19C25465351	ProperStrand	1	chr7	25465144	25465218	LTR	RMER4B	ERVK	chr7RMER4B25464920	NonProperStrand	1	1	-inf
chr2	95171898	95171998	LINE	Lx5	L1	chr2Lx595171417	NonProperStrand	1	chr2	95172064	95172154	LINE	Lx5	L1	chr2Lx595172076	NonProperStrand	2	1	-inf
chr17	39847457	39847525	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	76009915	76009973	protein_coding	Plec	exon	ENSMUSG00000022565	NonProperStrand	4	1	-3.7035
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr12	86489252	86489368	protein_coding	Rps6kl1	intron	ENSMUSG00000019235	NonProperStrand	221	1	-7.2067
chr8	87215846	87215946	protein_coding-noncoding	Trmt1	utr5	ENSMUSG00000001909	NonProperStrand	1	chr8	87215966	87216056	protein_coding	Trmt1	intron	ENSMUSG00000001909	NonProperStrand	1	1	-inf
chr14	19278151	19278194	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr17	70963679	70963776	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-5.7427
chr17	39847778	39847800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	85989105	85989206	LTR	RLTR14	ERV1	chr3RLTR1485989018	NonProperStrand	1	1	-inf
chr18	36598533	36598588	protein_coding	Pfdn1	intron	ENSMUSG00000024346	NonProperStrand	30	chr4	123498641	123498706	protein_coding	Rhbdl2	intron	ENSMUSG00000043333	NonProperStrand	52	1	-13.7134
chr2	167997315	168000310	SINE	B3	B2	chr2B3167998819	ProperStrand	1	chr17	31109512	31109605	protein_coding	Umodl1	intron	ENSMUSG00000054134	ProperStrand	35	1	-inf
chr3	42663460	42663550	LINE	HAL1	L1	chr3HAL142663295	NonProperStrand	1	chr3	42663693	42663793	SINE	B1_Mus1	Alu	chr3B1_Mus142663638	ProperStrand	1	1	-inf
chr6	52126453	52126542	antisense	2700086A05Rik	.	ENSMUSG00000085696	ProperStrand	3	chr6	52114820	52114881	protein_coding	Hoxa2	utr5	ENSMUSG00000014704	NonProperStrand	4	1	-inf
chr5	146260993	146261237	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	110238637	110281351	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	8	-13.0064
chr15	82947041	82947119	protein_coding	Rrp7a	utr3	ENSMUSG00000018040	ProperStrand	48	chr1	136364891	136364944	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-10.8291
chr9	59798566	59798646	protein_coding	Nr2e3	intron	ENSMUSG00000032292	NonProperStrand	5	chr9	64175292	64175650	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-14.1102
chr4	151660109	151660128	protein_coding	Hes3	utr3	ENSMUSG00000028946	ProperStrand	5	chr3	84335598	84335616	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-15.1071
chr15	98529325	98529380	LTR	MT2B	ERVL	chr15MT2B98529076	ProperStrand	2	chr11	119875013	119875058	protein_coding	Aatk	intron	ENSMUSG00000025375	NonProperStrand	61	1	-19.2245
chr2	135856356	135856400	DNA	RMER30	MER1_type	chr2RMER30135856354	NonProperStrand	1	chr2	135858321	135858397	LINE	L1Md_A	L1	chr2L1Md_A135857445	ProperStrand	1	1	-inf
chr11	74412221	74412248	LTR	MLT1A0	MaLR	chr11MLT1A074412199	ProperStrand	1	chr17	39846461	39846498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	177478057	177478137	LINE	L1VL1	L1	chr2L1VL1177476150	ProperStrand	8	chr4	44126511	44126567	SINE	ID_B1	B4	chr4ID_B144126367	ProperStrand	1	1	-inf
chr18	65026140	65026230	LTR	MTE2b	MaLR	chr18MTE2b65026082	ProperStrand	1	chr18	65025889	65025989	LTR	RLTR14	ERV1	chr18RLTR1465025682	ProperStrand	1	1	-inf
chr18	21093900	21093999	LINE	L1Md_A	L1	chr18L1Md_A21093916	ProperStrand	1	chr18	21093702	21093792	SINE	RSINE1	B4	chr18RSINE121093714	NonProperStrand	1	1	-inf
chr9	31573192	31573292	SINE	MIRb	MIR	chr9MIRb31573092	NonProperStrand	1	chr9	31572915	31573005	Simple_repeat	(TAGA)n	Simple_repeat	chr9(TAGA)n31572935	ProperStrand	1	1	-inf
chr5	33519784	33519880	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr5	33520606	33520658	LTR	MTA_Mm	MaLR	chr5MTA_Mm33520344	NonProperStrand	42	2	-15.5830
chr11	62604512	62604584	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr13	112578190	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-4.9853
chr17	39846433	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	48304899	48305030	SINE	ID_B1	B4	chr16ID_B148304887	NonProperStrand	1	1	-inf
chr17	39846750	39846831	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	87224272	87224290	protein_coding	Epas1	intron	ENSMUSG00000024140	ProperStrand	3	1	-4.3017
chr7	29476496	29476596	LTR	RLTR41	ERV1	chr7RLTR4129476219	NonProperStrand	1	chr7	29476619	29476709	SINE	B1F1	Alu	chr7B1F129476619	NonProperStrand	1	1	-inf
chr7	83419469	83419499	LINE	L1MA8	L1	chr7L1MA883419181	ProperStrand	2	chr12	18426666	18426760	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n18426646	ProperStrand	2	2	-inf
chr6	40492040	40492056	SINE	B1F1	Alu	chr6B1F140491988	NonProperStrand	1	chr14	47510093	47510161	protein_coding	Samd4	intron	ENSMUSG00000021838	ProperStrand	53	1	-inf
chr7	19308463	19308479	protein_coding	Psg22	intron	ENSMUSG00000044903	NonProperStrand	1	chr9	24499788	24499915	protein_coding	Dpy19l2	intron	ENSMUSG00000085576	ProperStrand	89	1	-inf
chr5	146260994	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	65196572	65196661	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-4.1434
chr18	24231871	24231971	LINE	Lx7	L1	chr18Lx724231803	ProperStrand	1	chr18	25044423	25044513	protein_coding	Fhod3	intron	ENSMUSG00000034295	NonProperStrand	24	1	-inf
chr11	6594226	6596110	Other	RMER1B	Other	chr11RMER1B6594132	NonProperStrand	2	chr11	6596125	6596225	SINE	B3A	B2	chr11B3A6596133	ProperStrand	2	2	-inf
chr15	76651478	76651562	SINE	B2_Mm2	B2	chr15B2_Mm276651369	ProperStrand	1	chr15	76649253	76649308	SINE	ID_B1	B4	chr15ID_B176649211	ProperStrand	1	1	-inf
chr17	39099252	39099352	LINE	L1_Mur2	L1	chr17L1_Mur239098474	NonProperStrand	1	chr17	39099560	39099650	LINE	Lx3B	L1	chr17Lx3B39099443	NonProperStrand	1	1	-inf
chr2	5379293	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr7	96360945	96410400	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	2	-3.2710
chrX	8173123	8173187	LINE	Lx2B	L1	chrXLx2B8172441	ProperStrand	1	chr1	136364891	136364969	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-inf
chr3	58779802	58779902	LINE	L1ME1	L1	chr3L1ME158779781	ProperStrand	1	chr3	58779932	58780022	SINE	B1_Mm	Alu	chr3B1_Mm58779947	NonProperStrand	1	1	-inf
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr1	136610135	136610235	protein_coding	Syt2	intron	ENSMUSG00000026452	ProperStrand	51	1	-12.6006
chr5	45811296	45811357	Other	RMER1A	Other	chr5RMER1A45810675	ProperStrand	1	chr12	110691572	110691647	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-inf
chr9	21767412	21767454	protein_coding	Epor	intron	ENSMUSG00000006235	ProperStrand	5	chr19	53231203	53231278	protein_coding	Add3	intron	ENSMUSG00000025026	ProperStrand	33	1	-18.5166
chr8	31149904	31149951	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr2	5379265	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0743
chr13	90055043	90055138	protein_coding	Xrcc4	intron	ENSMUSG00000021615	ProperStrand	57	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.2220
chr17	39847636	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	100968024	100968160	LTR	ORR1C2	MaLR	chr9ORR1C2100967947	ProperStrand	1	1	-inf
chr9	115042349	115042413	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	chr6	38810859	38810914	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	1	-9.1232
chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr17	30005234	30106642	protein_coding	Mdga1	intron	ENSMUSG00000043557	NonProperStrand	98	2	-6.0599
chr9	123461823	123461859	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	135539343	135539377	protein_coding	Slc39a8	intron	ENSMUSG00000053897	NonProperStrand	9	1	-4.5963
chr4	117072438	117072460	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	chr7	126930361	126930485	protein_coding	Acsm3	utr3	ENSMUSG00000030935	ProperStrand	1	1	-inf
chr19	5758832	5758957	protein_coding	Scyl1	exon	ENSMUSG00000024941	NonProperStrand	2	chr11	97229361	97229434	protein_coding	Socs7	intron	ENSMUSG00000038485	NonProperStrand	32	1	-19.8685
chr17	39846352	39846412	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	100764757	100764854	LTR	RMER6C	ERVK	chr7RMER6C100764404	ProperStrand	1	1	-inf
chr17	25859473	25860021	protein_coding-noncoding	Chtf18	utr3	ENSMUSG00000019214	ProperStrand	3	chr17	25859266	25859436	protein_coding	Chtf18	intron	ENSMUSG00000019214	ProperStrand	12	2	-22.1141
chr2	131283368	131283457	LINE	Lx7	L1	chr2Lx7131282006	ProperStrand	2	chr2	131281027	131281092	LTR	MTC	MaLR	chr2MTC131280687	ProperStrand	1	1	-inf
chr1	34828812	34836775	protein_coding	Arhgef4	intron	ENSMUSG00000037509	NonProperStrand	73	chr13	44869598	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.1199
chr7	133011169	133011526	protein_coding-noncoding	D430042O09Rik	utr5	ENSMUSG00000032743	NonProperStrand	10	chr7	133011073	133011649	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	5	-inf
chr5	74309372	74309462	DNA	Charlie1a	MER1_type	chr5Charlie1a74309373	ProperStrand	1	chr5	74308942	74309042	LTR	ORR1E	MaLR	chr5ORR1E74308892	ProperStrand	1	1	-inf
chr17	26754270	26754333	protein_coding	Ergic1	intron	ENSMUSG00000001576	ProperStrand	56	chr17	70872996	70873049	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-6.3438
chr15	39927752	39927792	LINE	L1Md_T	L1	chr15L1Md_T39926440	NonProperStrand	1	chr2	176700940	176701056	protein_coding	Gm14296	utr3	ENSMUSG00000074527	NonProperStrand	7	1	-inf
chr9	37514247	37514296	LINE	L1VL2	L1	chr9L1VL237514238	NonProperStrand	6	chr5	105888509	105888588	protein_coding	Lrrc8b	intron	ENSMUSG00000070639	ProperStrand	20	1	-19.3610
chr16	22372539	22372613	LTR	MER77	ERVL	chr16MER7722372401	ProperStrand	1	chr5	36796287	36796352	lincRNA	2210406O10Rik	intron	ENSMUSG00000039563	ProperStrand	73	1	-inf
chr17	39847194	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	35834637	35834728	protein_coding	Parp14	utr3	ENSMUSG00000034422	NonProperStrand	2	1	-6.5615
chr3	133486050	133486096	LINE	L1_Mus2	L1	chr3L1_Mus2133484331	ProperStrand	14	chr3	8520839	8520895	protein_coding	Stmn2	intron	ENSMUSG00000027500	ProperStrand	66	1	-14.7865
chr2	3179391	3179467	LINE	L1Md_F2	L1	chr2L1Md_F23176358	NonProperStrand	3	chr17	39845930	39845996	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	3	-inf
chr17	39847284	39847345	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	165337895	165337990	LTR	MLT1A0	MaLR	chr1MLT1A0165337880	NonProperStrand	1	1	-inf
chr13	24474410	24474449	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	chr6	67259597	67259638	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	1	-11.6853
chr2	39141821	39141898	LINE	Lx	L1	chr2Lx39140941	ProperStrand	1	chr17	39843733	39843809	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr9	110281293	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr8	22377820	22377903	pseudogene	Gm15303	.	ENSMUSG00000082957	NonProperStrand	2	1	-15.0102
chr17	39846657	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	33042846	33042880	LTR	RMER4B	ERVK	chr6RMER4B33042626	ProperStrand	1	1	-inf
chr17	83466065	83466165	LTR	MLT2D	ERVL	chr17MLT2D83465960	NonProperStrand	3	chr11	68247092	68247181	protein_coding	Pik3r5	intron	ENSMUSG00000020901	NonProperStrand	75	3	-inf
chr13	23534183	23534284	LINE	L1MA6	L1	chr13L1MA623534197	ProperStrand	3	chr17	39847391	39847422	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39845857	39845977	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	121678113	121678130	protein_coding	Arhgap29	intron	ENSMUSG00000039831	NonProperStrand	5	1	-6.7797
chr6	71955233	71955356	LTR	LTR16C	ERVL	chr6LTR16C71955207	ProperStrand	2	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-16.0837
chr3	130728783	130728808	LTR	MT2A	ERVL	chr3MT2A130728698	NonProperStrand	5	chr17	74643317	74643392	protein_coding	Memo1	intron	ENSMUSG00000058704	NonProperStrand	64	1	-17.0892
chr15	59031633	59031723	LTR	MLT1C	MaLR	chr15MLT1C59031640	NonProperStrand	1	chr15	59031493	59031593	LTR	ORR1B2	MaLR	chr15ORR1B259031297	ProperStrand	2	1	-inf
chr12	104620764	104620854	LTR	ORR1A2	MaLR	chr12ORR1A2104620569	NonProperStrand	1	chr12	104620986	104621086	SINE	ID4	ID	chr12ID4104621010	NonProperStrand	1	1	-inf
chr18	77378326	77378344	protein_coding	Pias2	intron	ENSMUSG00000025423	ProperStrand	3	chr2	32212931	32212989	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	193	1	-16.0350
chr1	31346253	31346343	LINE	L1_Mur1	L1	chr1L1_Mur131344994	NonProperStrand	2	chr17	80926953	80927053	protein_coding	Cdkl4	intron	ENSMUSG00000033966	NonProperStrand	6	1	-inf
chr3	39118423	39118439	LINE	L1Md_T	L1	chr3L1Md_T39117553	ProperStrand	2	chr6	3201479	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr17	39847182	39847421	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	33823098	33823500	protein_coding	Hnrnpm	utr5	ENSMUSG00000059208	ProperStrand	59	5	-3.7619
chr11	17165637	17165661	protein_coding	C1d	intron	ENSMUSG00000000581	ProperStrand	6	chr6	122728993	122729068	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-13.7732
chr2	22744854	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	78181298	78181362	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	1	-5.9017
chr5	115560796	115560863	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	165	chr1	181128736	181128793	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-8.0189
chr11	59076322	59076338	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	chr12	70685798	70685819	protein_coding	Sos2	utr3	ENSMUSG00000034801	NonProperStrand	2	1	-20.0050
chr11	109011816	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	21722156	21722196	LTR	IAPEz-int	ERVK	chr13IAPEz-int21722038	NonProperStrand	5	1	-11.2339
chr2	26953894	26953994	protein_coding-noncoding	Adamtsl2	utr5	ENSMUSG00000036040	NonProperStrand	6	chr2	26954115	26954205	protein_coding	Adamtsl2	exon	ENSMUSG00000036040	NonProperStrand	8	3	-inf
chr11	78707193	78707283	LINE	L1M3	L1	chr11L1M378707120	NonProperStrand	1	chr11	78707346	78707446	SINE	B2_Mm2	B2	chr11B2_Mm278707328	ProperStrand	1	1	-inf
chr14	25616929	25617005	LTR	ORR1C2	MaLR	chr14ORR1C225616805	NonProperStrand	1	chr17	39846747	39846796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	3201474	3201545	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	48589257	48589332	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	1	-4.6059
chr13	44869580	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr4	148576298	148576368	protein_coding	Kif1b	intron	ENSMUSG00000063077	NonProperStrand	70	1	-4.1992
chr17	39846874	39846922	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	59749089	59749171	Other	RMER1A	Other	chr11RMER1A59749084	ProperStrand	1	1	-inf
chr17	39846832	39846932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	87125196	87125286	SINE	B4A	B4	chr17B4A87125112	ProperStrand	5	1	-3.1907
chr17	32853090	32853180	LINE	Lx8	L1	chr17Lx832853084	ProperStrand	2	chr17	32852979	32853079	LTR	ORR1C2	MaLR	chr17ORR1C232852742	NonProperStrand	2	2	-inf
chr18	44419673	44419751	LTR	IAPEz-int	ERVK	chr18IAPEz-int44418347	NonProperStrand	16	chr6	125161775	125161829	SINE	B1_Mm	Alu	chr6B1_Mm125161651	ProperStrand	1	1	-inf
chr3	95661938	95661967	lincRNA	Gm16884	intron	ENSMUSG00000087673	ProperStrand	40	chr6	35072838	35072959	protein_coding	Cnot4	intron	ENSMUSG00000038784	ProperStrand	34	1	-13.9932
chr17	39848598	39848737	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	101424294	101424312	protein_coding	Lepr	intron	ENSMUSG00000057722	NonProperStrand	24	1	-3.2864
chr5	121305846	121306069	protein_coding	Oas1f	intron	ENSMUSG00000053765	ProperStrand	1	chr10	63284259	63284314	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-inf
chr1	71615524	71615546	protein_coding-noncoding	Atic	utr5	ENSMUSG00000026192	NonProperStrand	22	chr17	70963741	70963773	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-8.2163
chr3	101143328	101143398	DNA	MER58B	MER1_type	chr3MER58B101143323	ProperStrand	1	chr3	101135582	101135642	SINE	B2_Mm2	B2	chr3B2_Mm2101135490	ProperStrand	1	1	-inf
chr14	100205170	100205219	DNA	MER103	DNA	chr14MER103100205101	ProperStrand	1	chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	41595860	41595948	LINE	L1Md_F2	L1	chr3L1Md_F241594750	ProperStrand	40	chr9	59313093	59313120	protein_coding	Arih1	intron	ENSMUSG00000025234	NonProperStrand	60	1	-12.8423
chr18	84869810	84869829	LINE	L1M4c	L1	chr18L1M4c84869371	ProperStrand	1	chr1	167268181	167268268	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	1	-inf
chr5	110075721	110075769	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int110074476	NonProperStrand	5	chr10	128127804	128127845	protein_coding	Rab5b	intron	ENSMUSG00000000711	NonProperStrand	89	1	-16.4063
chr17	39847250	39847288	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	69377099	69377212	protein_coding	Wrap53	intron	ENSMUSG00000041346	NonProperStrand	3	1	-5.4882
chr17	14911659	14911749	LINE	Lx9	L1	chr17Lx914911585	ProperStrand	1	chr17	14911498	14911598	LTR	MT2A	ERVL	chr17MT2A14911488	ProperStrand	1	1	-inf
chr18	35554490	35554557	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr19	8968249	8968325	protein_coding	Ints5	intron	ENSMUSG00000071652	ProperStrand	72	1	-8.0500
chr11	105251198	105251259	lincRNA	Gm11638	exon	ENSMUSG00000086487	ProperStrand	21	chr11	105252802	105252880	protein_coding	March10	intron	ENSMUSG00000078627	NonProperStrand	33	1	-15.3689
chr10	62691875	62691975	LINE	L1MB8	L1	chr10L1MB862691842	NonProperStrand	1	chr10	62692047	62692137	LTR	ORR1A2	MaLR	chr10ORR1A262691960	ProperStrand	1	1	-inf
chr17	39846952	39846991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	108623328	108623450	SINE	ID_B1	B4	chr6ID_B1108623287	NonProperStrand	1	1	-inf
chr14	70737975	70738107	protein_coding	Slc39a14	intron	ENSMUSG00000022094	ProperStrand	17	chr1	93221339	93221357	protein_coding	Espnl	intron	ENSMUSG00000049515	ProperStrand	18	1	-17.0170
chr1	45363230	45363329	LINE	L1Md_F3	L1	chr1L1Md_F345362949	ProperStrand	1	chr1	45363357	45363447	LINE	L1_Mm	L1	chr1L1_Mm45363319	NonProperStrand	1	1	-inf
chr10	22713851	22713951	LINE	L1MEg	L1	chr10L1MEg22713543	ProperStrand	2	chr10	22714018	22714108	LTR	RMER15	ERVL	chr10RMER1522713971	ProperStrand	2	2	-inf
chrX	106199706	106200191	Low_complexity	AT_rich	Low_complexity	chrXAT_rich106199717	ProperStrand	1	chrX	106200167	106200267	protein_coding	Hmgn5	utr3	ENSMUSG00000031245	NonProperStrand	68	1	-inf
chr17	39847752	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	146346838	146348478	LTR	MTD	MaLR	chr2MTD146346912	NonProperStrand	2	2	-inf
chr17	35509203	35509492	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	chr8	18882710	18882727	protein_coding	Agpat5	utr3	ENSMUSG00000031467	ProperStrand	42	1	-11.3165
chr17	26252998	26253043	protein_coding	Tmem8	intron	ENSMUSG00000024180	ProperStrand	23	chr13	97190572	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr7	34006361	34006461	LTR	RLTR12B	ERVK	chr7RLTR12B34006347	ProperStrand	1	chr11	115534574	115534664	protein_coding	Grb2	intron	ENSMUSG00000059923	ProperStrand	75	1	-inf
chr17	39846462	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	37653075	37653156	SINE	MIRb	MIR	chr9MIRb37653067	ProperStrand	5	2	-5.8332
chr17	39843601	39843683	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr14	14739836	14739853	protein_coding	Gm281	intron	ENSMUSG00000084902	ProperStrand	6	1	-7.0670
chr2	38569658	38577261	lincRNA	4933433P16Rik	intron	ENSMUSG00000087164	ProperStrand	25	chr2	38560943	38568888	protein_coding	Nr5a1	intron	ENSMUSG00000026751	NonProperStrand	26	3	-inf
chr7	61200837	61200937	LINE	L1_Mus3	L1	chr7L1_Mus361199537	NonProperStrand	1	chr7	61201050	61201140	SINE	B2_Mm1t	B2	chr7B2_Mm1t61201001	ProperStrand	1	1	-inf
chr9	119947811	119947919	LINE	L1MDa	L1	chr9L1MDa119947831	ProperStrand	1	chr1	132369948	132369974	lincRNA	Gm16083	intron	ENSMUSG00000085526	NonProperStrand	38	1	-inf
chr12	76897411	76907032	LTR	ORR1A2	MaLR	chr12ORR1A276903503	NonProperStrand	1	chr12	76907026	76910262	SINE	B1F	Alu	chr12B1F76909897	ProperStrand	1	1	-inf
chr15	51827540	51827625	LINE	Lx5	L1	chr15Lx551827024	NonProperStrand	2	chr15	51817677	51817699	protein_coding	Rad21	intron	ENSMUSG00000022314	ProperStrand	45	1	-19.8306
chr14	87037519	87073314	LINE	L1_Mus1	L1	chr14L1_Mus187037420	NonProperStrand	1	chr14	87037566	87073351	protein_coding	Diap3	intron	ENSMUSG00000022021	ProperStrand	76	1	-inf
chr11	69669672	69669762	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr16	32679581	32679681	protein_coding	Tnk2	exon	ENSMUSG00000022791	ProperStrand	153	3	-16.1076
chr9	110132169	110132259	protein_coding	Smarcc1	intron	ENSMUSG00000032481	ProperStrand	174	chr9	110222032	110222073	protein_coding	2610002I17Rik	intron	ENSMUSG00000054836	ProperStrand	17	1	-12.4474
chr1	119658302	119658398	LINE	L1_Mus1	L1	chr1L1_Mus1119656785	ProperStrand	2	chr2	52898672	52898723	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	1	-17.3078
chr15	96415598	96415698	protein_coding	Slc38a1	intron	ENSMUSG00000023169	ProperStrand	51	chr5	115490253	115490343	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-9.4816
chr5	85439382	85439482	LINE	L1_Mus1	L1	chr5L1_Mus185439364	NonProperStrand	1	chr5	85439272	85439362	LINE	Lx3A	L1	chr5Lx3A85438933	NonProperStrand	1	1	-inf
chr12	86089546	86089601	SINE	PB1D10	Alu	chr12PB1D1086089543	ProperStrand	1	chr9	123461968	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	45677500	45677524	protein_coding	Atxn1	intron	ENSMUSG00000046876	ProperStrand	103	chr1	128223451	128223501	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	1	-8.8500
chr7	143514232	143514277	LINE	L1MC4	L1	chr7L1MC4143514094	NonProperStrand	2	chr13	97190572	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr14	70612671	70613335	lincRNA	Gm16600	intron	ENSMUSG00000085557	NonProperStrand	20	chr6	125313417	125313433	protein_coding	Plekhg6	exon	ENSMUSG00000038167	ProperStrand	3	1	-22.8010
chr17	59672405	59672495	LINE	L1Md_T	L1	chr17L1Md_T59668802	NonProperStrand	1	chr14	33967387	33967487	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr10	40258543	40258578	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	129322785	129322830	protein_coding	Kpna6	utr3	ENSMUSG00000003731	ProperStrand	20	1	-7.5436
chr3	107867599	107867699	Other	RMER1A	Other	chr3RMER1A107867058	NonProperStrand	1	chr8	123105059	123105148	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	1	-inf
chr12	69306598	69306698	LINE	L1Md_F2	L1	chr12L1Md_F269306519	ProperStrand	1	chr12	69306432	69306522	SINE	B1_Mur1	Alu	chr12B1_Mur169306388	ProperStrand	1	1	-inf
chr14	120343964	120344049	LINE	L1MC	L1	chr14L1MC120343621	ProperStrand	5	chr14	120343369	120343438	LINE	Lx5	L1	chr14Lx5120340694	ProperStrand	8	1	-20.8574
chr1	161018148	161018260	LINE	L1Md_F2	L1	chr1L1Md_F2161017235	ProperStrand	1	chr9	78377541	78377570	SINE	B1_Mur1	Alu	chr9B1_Mur178377543	ProperStrand	3	1	-inf
chr13	29954373	29954505	LTR	RMER19B	ERVK	chr13RMER19B29954326	NonProperStrand	1	chr13	29954142	29954162	SINE	B2_Mm2	B2	chr13B2_Mm229954053	NonProperStrand	1	1	-inf
chr17	39845505	39845574	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr15	102298769	102298804	lincRNA	Gm17403	intron	ENSMUSG00000090630	NonProperStrand	27	1	-3.6644
chr16	91687879	91687916	protein_coding	Donson	intron	ENSMUSG00000022960	ProperStrand	4	chr19	41224781	41224878	protein_coding	Tll2	intron	ENSMUSG00000025013	ProperStrand	19	1	-20.0437
chr13	89690227	89690361	protein_coding	Hapln1	intron	ENSMUSG00000021613	NonProperStrand	42	chr1	87450101	87450118	pseudogene	Gm7592	.	ENSMUSG00000090186	ProperStrand	36	1	-13.7785
chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr14	14067412	14067520	protein_coding	Gm5087	intron	ENSMUSG00000051729	NonProperStrand	25	1	-7.7172
chr18	4415795	4415885	LTR	ORR1B2	MaLR	chr18ORR1B24415747	NonProperStrand	1	chr18	4415886	4415986	SINE	RSINE1	B4	chr18RSINE14415901	NonProperStrand	1	1	-inf
chr12	100379561	100379661	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n100379515	NonProperStrand	3	chr12	100379700	100379790	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n100379715	NonProperStrand	3	3	-inf
chr14	75847965	75848028	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.3498
chr6	86543341	86543441	LINE	L1M2	L1	chr6L1M286543363	NonProperStrand	2	chr6	86543246	86543336	SINE	B3	B2	chr6B386543144	NonProperStrand	2	2	-inf
chr13	48860086	48860119	LTR	RLTR16	ERVK	chr13RLTR1648859758	ProperStrand	1	chr17	39846580	39846603	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	37994267	37994331	LINE	L1MB7	L1	chr7L1MB737994171	ProperStrand	3	chr17	39843504	39843587	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-8.6612
chr1	192943878	192943978	SINE	ID_B1	B4	chr1ID_B1192943820	NonProperStrand	3	chr1	192944003	192944093	Simple_repeat	(CATATA)n	Simple_repeat	chr1(CATATA)n192944006	NonProperStrand	3	3	-inf
chr16	35981614	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-5.1485
chr9	78513072	78513162	protein_coding	Cd109	intron	ENSMUSG00000046186	ProperStrand	25	chr3	95690837	95690937	protein_coding	C920021L13Rik	utr5	ENSMUSG00000080727	ProperStrand	20	1	-16.0412
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr18	38601246	38601375	protein_coding	Ndfip1	intron	ENSMUSG00000024425	NonProperStrand	104	2	-17.5385
chr17	39845877	39845943	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr1	156620844	156620895	LTR	MTB	MaLR	chr1MTB156620533	NonProperStrand	2	1	-9.0607
chr19	14540227	14540335	protein_coding	Tle4	intron	ENSMUSG00000024642	ProperStrand	76	chr3	30801130	30801162	protein_coding	Phc3	utr3	ENSMUSG00000037652	NonProperStrand	17	1	-14.1102
chr1	34044507	34044569	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr5	132475401	132475482	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	4	-8.3122
chr9	25260378	25260456	LINE	Lx9	L1	chr9Lx925259938	ProperStrand	2	chr9	65654835	65654903	protein_coding	Zfp609	intron	ENSMUSG00000040524	NonProperStrand	165	2	-inf
chr9	22275587	22275635	SINE	B2_Mm1t	B2	chr9B2_Mm1t22275520	NonProperStrand	1	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-inf
chr1	118972732	118972832	LINE	L1_Mus1	L1	chr1L1_Mus1118972548	NonProperStrand	2	chr1	118972868	118972958	LINE	L1_Mus1	L1	chr1L1_Mus1118972754	NonProperStrand	7	2	-inf
chr9	123462140	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	122069749	122069835	protein_coding	Sord	intron	ENSMUSG00000027227	ProperStrand	4	1	-6.3300
chr17	39847229	39847355	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	52571568	52571585	protein_coding	Hibadh	intron	ENSMUSG00000029776	NonProperStrand	4	1	-4.8204
chr10	22358315	22358405	LINE	Lx9	L1	chr10Lx922357841	NonProperStrand	1	chr10	22358430	22358530	LINE	Lx9	L1	chr10Lx922358402	NonProperStrand	1	1	-inf
chr1	100180182	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr1	162715631	162716280	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	1	-8.5903
chr9	65829775	65829801	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	NonProperStrand	105	chr12	4853241	4853339	protein_coding	BC068281	intron	ENSMUSG00000051721	ProperStrand	11	1	-14.3684
chr4	150242146	150244070	LINE	L2	L2	chr4L2150243950	NonProperStrand	21	chr4	150241079	150242150	protein_coding	Errfi1	exon	ENSMUSG00000028967	ProperStrand	111	2	-19.3786
chrX	58031877	58031967	antisense	Gm14661	.	ENSMUSG00000067835	ProperStrand	56	chr2	115736962	115737062	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	1	-10.2566
chr10	23863156	23863175	LINE	L1_Mm	L1	chr10L1_Mm23863119	ProperStrand	1	chr6	3201489	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr12	54696783	54696883	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr18	49879208	49879299	protein_coding	Dtwd2	intron	ENSMUSG00000024505	NonProperStrand	26	3	-20.5432
chr11	120538726	120538789	protein_coding	Aspscr1	utr5	ENSMUSG00000025142	ProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chrX	50598160	50612996	protein_coding	Fam122b	utr3	ENSMUSG00000036022	ProperStrand	51	chrX	50564801	50592080	protein_coding	Plac1	intron	ENSMUSG00000061082	ProperStrand	82	2	-18.4108
chr13	10092398	10092449	LINE	Lx9	L1	chr13Lx910092206	NonProperStrand	1	chr17	39846352	39846413	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	69394779	69394879	LINE	L1Md_T	L1	chr5L1Md_T69394743	ProperStrand	1	chr5	69394658	69394748	LINE	L1_Mm	L1	chr5L1_Mm69394581	NonProperStrand	1	1	-inf
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	88747674	88747774	protein_coding	Prol1	intron	ENSMUSG00000064156	ProperStrand	3	1	-4.3017
chr10	88775250	88775350	LTR	RMER12	ERVK	chr10RMER1288775257	NonProperStrand	1	chr17	39847045	39847135	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847804	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	70654446	70654498	SINE	B4A	B4	chr11B4A70654393	NonProperStrand	5	1	-3.2379
chr3	138816411	138816464	SINE	B4A	B4	chr3B4A138816318	NonProperStrand	1	chr1	59191697	59191790	protein_coding	Mpp4	intron	ENSMUSG00000079550	NonProperStrand	7	1	-inf
chr1	167225345	167225416	SINE	B4A	B4	chr1B4A167225279	ProperStrand	2	chr6	22351415	22351505	SINE	B2_Mm2	B2	chr6B2_Mm222351322	NonProperStrand	1	1	-inf
chr19	37261750	37261785	lincRNA	A330032B11Rik	intron	ENSMUSG00000085432	ProperStrand	1	chr14	76124257	76124347	protein_coding	Cog3	intron	ENSMUSG00000034893	NonProperStrand	29	1	-inf
chr10	40258612	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	ProperStrand	1	chr17	39843827	39843895	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	ProperStrand	15	1	-inf
chr1	100180181	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr10	122571280	122571302	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-11.1561
chr10	51248018	51248118	LTR	MuRRS4-int	ERV1	chr10MuRRS4-int51247847	NonProperStrand	1	chr10	51248256	51248346	LTR	MuRRS4-int	ERV1	chr10MuRRS4-int51248168	NonProperStrand	1	1	-inf
chr3	87915011	87915094	protein_coding	Iqgap3	intron	ENSMUSG00000028068	ProperStrand	72	chr6	128026295	128026347	protein_coding	Tspan9	intron	ENSMUSG00000030352	ProperStrand	182	1	-9.4307
chr10	95254933	95255038	LINE	Lx	L1	chr10Lx95254775	NonProperStrand	1	chr10	95255408	95255449	protein_coding	4732465J04Rik	utr5	ENSMUSG00000071107	NonProperStrand	9	1	-inf
chr17	4082172	4082262	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chrX	150019829	150019929	LINE	L1Md_F2	L1	chrXL1Md_F2150019303	NonProperStrand	1	1	-inf
chr17	45571122	45571469	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	chr9	118674951	118674997	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.2896
chr9	123461930	123462050	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	5558451	5558494	protein_coding	Gtpbp10	intron	ENSMUSG00000040464	ProperStrand	3	1	-7.0114
chr17	39847656	39847729	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	125157185	125157253	SINE	B1_Mur1	Alu	chr6B1_Mur1125157144	ProperStrand	1	1	-inf
chr4	79836465	79836555	LINE	L1Md_T	L1	chr4L1Md_T79835655	ProperStrand	1	chr4	79836837	79836937	LINE	L1Md_T	L1	chr4L1Md_T79836539	ProperStrand	1	1	-inf
chr11	83574432	83574469	protein_coding	Heatr6	exon	ENSMUSG00000000976	NonProperStrand	2	chr4	46168210	46168257	protein_coding	Ncbp1	intron	ENSMUSG00000028330	ProperStrand	21	1	-20.6625
chr9	90265528	90265623	SINE	B1_Mm	Alu	chr9B1_Mm90265548	ProperStrand	1	chr4	108620220	108620276	antisense	8030443G20Rik	.	ENSMUSG00000086483	NonProperStrand	37	1	-inf
chr15	82190297	82190397	LTR	MT2C_Mm	ERVL	chr15MT2C_Mm82190266	ProperStrand	2	chr15	82190196	82190286	SINE	B1F2	Alu	chr15B1F282190158	ProperStrand	2	2	-inf
chr17	39846807	39846860	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	29491423	29491702	SINE	B1_Mur2	Alu	chr17B1_Mur229491511	ProperStrand	3	1	-4.3017
chr3	86129492	86129563	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	chr4	139338133	139338151	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	1	-10.2522
chr3	6088696	6088786	LTR	ORR1D1	MaLR	chr3ORR1D16088574	ProperStrand	1	chr3	6088465	6088565	LTR	RLTR23	ERV1	chr3RLTR236088099	NonProperStrand	1	1	-inf
chr12	110539439	110539556	LINE	Lx	L1	chr12Lx110538434	ProperStrand	9	chr12	110524798	110524819	LINE	Lx2	L1	chr12Lx2110524579	ProperStrand	11	1	-19.5805
chr11	97561729	97561757	protein_coding	Pcgf2	utr5	ENSMUSG00000018537	NonProperStrand	2	chr2	3410873	3410891	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-21.6660
chr17	4082156	4082211	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr18	39598867	39598970	protein_coding	Nr3c1	intron	ENSMUSG00000024431	NonProperStrand	3	1	-14.0225
chr10	59773794	59773844	protein_coding	Cdh23	exon	ENSMUSG00000012819	NonProperStrand	234	chr7	99969491	99969551	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-6.8094
chr1	118941577	118941703	LINE	L1Md_F2	L1	chr1L1Md_F2118941257	ProperStrand	49	chr6	130226578	130227107	protein_coding	Klra10	intron	ENSMUSG00000072718	NonProperStrand	1	1	-inf
chr17	39848197	39848378	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	1	-3.4660
chr12	31318313	31318366	LINE	L1Md_F2	L1	chr12L1Md_F231318297	NonProperStrand	1	chr16	48579605	48579641	protein_coding	Morc1	intron	ENSMUSG00000022652	ProperStrand	96	1	-inf
chr7	49779209	49779327	LINE	L1_Mur2	L1	chr7L1_Mur249779186	ProperStrand	1	chr5	134686737	134688353	protein_coding	Gtf2ird2	intron	ENSMUSG00000015942	NonProperStrand	9	1	-inf
chr16	18240754	18240794	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	38	chr10	119227641	119227691	protein_coding	Grip1	intron	ENSMUSG00000034813	NonProperStrand	73	2	-inf
chr18	36594851	36594885	protein_coding	Pfdn1	intron	ENSMUSG00000024346	NonProperStrand	30	chr9	110281292	110281336	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.9555
chr6	3201485	3201547	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	4793191	4793263	processed_transcript	Gm15525	.	ENSMUSG00000084815	NonProperStrand	48	2	-5.6548
chr19	8555098	8555198	LINE	Lx2	L1	chr19Lx28554948	ProperStrand	1	chr19	8554860	8554950	SINE	B2_Mm2	B2	chr19B2_Mm28554884	ProperStrand	1	1	-inf
chr17	39846583	39846683	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	124397036	124397054	protein_coding	Clstn3	intron	ENSMUSG00000008153	NonProperStrand	3	1	-4.3017
chr17	27766527	27766562	LTR	MTA_Mm	MaLR	chr17MTA_Mm27766531	ProperStrand	6	chr17	27767527	27767572	protein_coding	Rps10	intron	ENSMUSG00000052146	ProperStrand	12	1	-inf
chr5	26895777	26895887	SINE	B4	B4	chr5B426895807	ProperStrand	1	chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	102585548	102585645	LINE	L1Md_T	L1	chr12L1Md_T102584782	ProperStrand	1	chr18	12737378	12737396	protein_coding	Lama3	intron	ENSMUSG00000024421	NonProperStrand	15	1	-inf
chr13	114298057	114298090	LTR	RLTR10C	ERVK	chr13RLTR10C114297609	ProperStrand	2	chr17	39846759	39846836	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr8	80985195	80985221	LINE	L1Md_F2	L1	chr8L1Md_F280985167	ProperStrand	7	chr4	149120030	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.9733
chr17	39848541	39848631	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	131129848	131129948	LTR	MT2_Mm	ERVL	chr1MT2_Mm131129675	ProperStrand	6	3	-14.7570
chr6	3201469	3201509	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	120696013	120696043	protein_coding-noncoding	Far1	utr5	ENSMUSG00000030759	ProperStrand	6	3	-17.6498
chr8	91214635	91214725	LINE	L2	L2	chr8L291214336	NonProperStrand	1	chr8	91214836	91214936	SINE	ID_B1	B4	chr8ID_B191214854	ProperStrand	1	1	-inf
chr2	156828463	156828553	protein_coding-noncoding	Dsn1	utr3	ENSMUSG00000027635	ProperStrand	2	chr2	156828275	156828375	protein_coding	Dsn1	intron	ENSMUSG00000027635	ProperStrand	19	2	-inf
chr1	118973368	118973399	LINE	L1Md_F3	L1	chr1L1Md_F3118973335	ProperStrand	1	chr17	39846954	39846995	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	71554909	71555009	LINE	L1MB4	L1	chr10L1MB471554714	NonProperStrand	1	chr10	71555107	71555197	LINE	L1MB4	L1	chr10L1MB471555052	NonProperStrand	1	1	-inf
chr2	36094032	36094048	protein_coding	Ptgs1	intron	ENSMUSG00000047250	ProperStrand	13	chr5	140419417	140419480	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	81	1	-14.5378
chr4	69060272	69060374	LTR	MYSERV16_I-int	ERVK	chr4MYSERV16_I-int69059793	ProperStrand	1	chr9	68925599	68925689	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-inf
chr6	31144973	31145040	protein_coding	AB041803	intron	ENSMUSG00000044471	ProperStrand	114	chr5	34225022	34232185	protein_coding	Whsc1	intron	ENSMUSG00000057406	NonProperStrand	47	1	-11.2254
chr6	14452863	14452953	SINE	B4A	B4	chr6B4A14452758	NonProperStrand	1	chr6	14452609	14452709	SINE	MIR	MIR	chr6MIR14452599	ProperStrand	1	1	-inf
chr4	133815481	133815543	SINE	ID_B1	B4	chr4ID_B1133815427	NonProperStrand	2	chr7	49840663	49840759	protein_coding	Gm7221	intron	ENSMUSG00000092335	NonProperStrand	22	2	-inf
chr17	12918083	12918126	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	57	chr2	69948502	69951389	protein_coding	Myo3b	intron	ENSMUSG00000042064	ProperStrand	45	1	-12.7068
chr5	23852210	23852279	protein_coding	Kcnh2	intron	ENSMUSG00000038319	NonProperStrand	16	chr11	33220219	33220249	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-10.1171
chr9	44388594	44388882	SINE	B3	B2	chr9B344388754	ProperStrand	2	chr17	28330961	28330996	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	108	2	-inf
chr11	102905714	102905758	protein_coding	Nmt1	intron	ENSMUSG00000020936	NonProperStrand	24	chr13	97190569	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.9352
chr9	123461802	123462158	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	43977364	43977573	protein_coding	Glipr2	intron	ENSMUSG00000028480	ProperStrand	11	2	-7.1466
chr17	39846419	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	73029625	73029713	protein_coding-noncoding	2810428I15Rik	utr3	ENSMUSG00000058833	ProperStrand	4	1	-3.6552
chr19	5274936	5275078	protein_coding	Sf3b2	exon	ENSMUSG00000024853	ProperStrand	58	chr4	116741701	116741747	protein_coding	Eif2b3	intron	ENSMUSG00000028683	ProperStrand	53	1	-12.3408
chr12	38327899	38327999	LINE	Lx7	L1	chr12Lx738327578	ProperStrand	1	chr13	67258941	67259031	LINE	L1Md_F	L1	chr13L1Md_F67256003	ProperStrand	1	1	-inf
chr14	81753548	81753648	LINE	L1Md_F2	L1	chr14L1Md_F281753136	NonProperStrand	1	chr14	81753975	81754065	LINE	L1_Mus1	L1	chr14L1_Mus181753642	NonProperStrand	1	1	-inf
chr8	26600219	26600309	SINE	B1_Mus2	Alu	chr8B1_Mus226600183	NonProperStrand	1	chr8	26600426	26600526	Simple_repeat	(TCTA)n	Simple_repeat	chr8(TCTA)n26600347	ProperStrand	1	1	-inf
chr16	31843228	31843285	protein_coding	Dlg1	intron	ENSMUSG00000022770	ProperStrand	104	chr18	35774543	35774597	protein_coding	Paip2	intron	ENSMUSG00000037058	ProperStrand	29	1	-12.3871
chr5	121205020	121205140	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr5	142214327	142214344	protein_coding	Sdk1	intron	ENSMUSG00000039683	NonProperStrand	86	1	-9.1644
chr6	15982970	15983060	LINE	Lx9	L1	chr6Lx915982777	ProperStrand	1	chr6	15982597	15982697	Simple_repeat	(TCTA)n	Simple_repeat	chr6(TCTA)n15982581	NonProperStrand	1	1	-inf
chr17	39847054	39847123	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr3	105686728	105687197	protein_coding	Adora3	intron	ENSMUSG00000000562	ProperStrand	7	1	-18.1953
chr10	103111617	103111717	SINE	B2_Mm2	B2	chr10B2_Mm2103111605	ProperStrand	2	chr10	103111830	103111920	SINE	B3	B2	chr10B3103111815	ProperStrand	2	2	-inf
chr17	46874686	46874788	protein_coding	Cnpy3	exon	ENSMUSG00000023973	ProperStrand	25	chr2	38036475	38036532	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	1	-10.3472
chr2	29472307	29472397	LTR	RMER19B	ERVK	chr2RMER19B29472258	ProperStrand	1	chr2	29472722	29472822	SINE	B4A	B4	chr2B4A29472597	NonProperStrand	1	1	-inf
chr17	39846588	39846702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	143819202	143819220	protein_coding	Rnf216	intron	ENSMUSG00000045078	NonProperStrand	9	4	-8.7827
chr13	36027973	36028073	DNA	Tigger5	MER2_type	chr13Tigger536027996	ProperStrand	1	chr13	36028098	36028188	DNA	Tigger5	MER2_type	chr13Tigger536028101	ProperStrand	1	1	-inf
chr6	65016052	65016140	protein_coding	Smarcad1	intron	ENSMUSG00000029920	NonProperStrand	17	chr2	5379294	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.0412
chr11	4767787	4767887	SINE	B1F	Alu	chr11B1F4767800	ProperStrand	7	chr11	4789672	4789762	protein_coding	Nipsnap1	intron	ENSMUSG00000034285	NonProperStrand	68	5	-21.7905
chr1	89612635	89612662	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	chr7	141486943	141486980	protein_coding	D7Ertd443e	intron	ENSMUSG00000030994	NonProperStrand	96	1	-7.1062
chr10	80054327	80054427	SINE	B1_Mus1	Alu	chr10B1_Mus180054325	NonProperStrand	4	chr10	80054237	80054327	SINE	B3	B2	chr10B380054145	NonProperStrand	8	4	-inf
chr17	20084343	20084433	Other	RMER1A	Other	chr17RMER1A20084215	ProperStrand	1	chr17	20084069	20084169	Other	RMER1B	Other	chr17RMER1B20083531	ProperStrand	1	1	-inf
chr13	51128838	51128938	LTR	IAPEz-int	ERVK	chr13IAPEz-int51128367	NonProperStrand	1	chr13	51129129	51129219	LTR	IAPEz-int	ERVK	chr13IAPEz-int51129065	NonProperStrand	1	1	-inf
chr10	40258494	40258681	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr17	39843708	39847626	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	43	-21.0701
chr11	113728109	113728158	protein_coding-noncoding	Sdk2	utr3	ENSMUSG00000041592	ProperStrand	4	chr9	40804747	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-13.1046
chr2	156664440	156664574	antisense	Gm14230	.	ENSMUSG00000087179	NonProperStrand	5	chrX	68742525	68742542	protein_coding	Cd99l2	intron	ENSMUSG00000035776	NonProperStrand	3	1	-inf
chr6	71865620	71865697	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	chr4	106672224	106672291	protein_coding	Ssbp3	intron	ENSMUSG00000061887	NonProperStrand	25	1	-12.2734
chr2	144564643	144566807	protein_coding	Dtd1	intron	ENSMUSG00000027430	ProperStrand	26	chr9	40804746	40804810	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-9.1212
chr4	53016573	53016627	LTR	MTA_Mm-int	MaLR	chr4MTA_Mm-int53016376	NonProperStrand	1	chr4	53015429	53015487	LTR	MTC	MaLR	chr4MTC53015233	ProperStrand	1	1	-inf
chr4	155214244	155214334	protein_coding	Mxra8	intron	ENSMUSG00000029070	NonProperStrand	30	chr4	155214144	155214244	protein_coding	Gm10562	utr5	ENSMUSG00000073679	ProperStrand	6	4	-inf
chr8	84686150	84686257	LINE	L1_Mus4	L1	chr8L1_Mus484686054	NonProperStrand	1	chr17	39846858	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	86720372	86721611	LINE	Lx4A	L1	chr11Lx4A86721440	ProperStrand	3	chr13	23622083	23622144	lincRNA	Gm11335	intron	ENSMUSG00000085016	ProperStrand	56	1	-18.2742
chr6	38606263	38606297	LTR	MTEa	MaLR	chr6MTEa38606193	NonProperStrand	5	chr1	34033259	34033346	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-11.9333
chr2	90395133	90395169	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr12	54180543	54180581	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-7.3386
chr15	81143264	81143364	LTR	MT2A	ERVL	chr15MT2A81142944	ProperStrand	1	chr15	81143530	81143620	LTR	MTD	MaLR	chr15MTD81143468	NonProperStrand	1	1	-inf
chr13	101416609	101416709	protein_coding	Rad17	intron	ENSMUSG00000021635	ProperStrand	2	chr13	102518986	102519076	protein_coding	Pik3r1	intron	ENSMUSG00000041417	NonProperStrand	3	1	-20.8297
chr17	39846411	39846475	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	68367379	68367474	SINE	B1_Mur4	Alu	chr11B1_Mur468367356	NonProperStrand	1	1	-inf
chr1	25986908	25987008	LINE	L1Md_F	L1	chr1L1Md_F25985806	NonProperStrand	1	chr1	25987198	25987288	LINE	L1Md_F	L1	chr1L1Md_F25986920	NonProperStrand	1	1	-inf
chr9	3414124	3414185	protein_coding	Cwf19l2	intron	ENSMUSG00000025898	ProperStrand	36	chr2	121748281	121748332	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-12.5268
chr8	86128832	86128922	SINE	B1_Mm	Alu	chr8B1_Mm86128827	ProperStrand	1	chr8	86128329	86128429	SINE	PB1D10	Alu	chr8PB1D1086128329	ProperStrand	1	1	-inf
chr15	85177759	85177784	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr10	19875377	19875476	protein_coding	Mtap7	intron	ENSMUSG00000019996	NonProperStrand	44	1	-9.9275
chr5	122800689	122800750	protein_coding	Rad9b	intron	ENSMUSG00000038569	ProperStrand	44	chr2	29630197	29630248	protein_coding	Trub2	intron	ENSMUSG00000039826	NonProperStrand	115	1	-11.3409
chrX	123103796	123103820	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	2	chr1	163779870	163779886	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	19	1	-20.1864
chr13	6545013	6545113	LTR	MLT1C	MaLR	chr13MLT1C6545011	ProperStrand	1	chr13	6545184	6545274	Simple_repeat	(GA)n	Simple_repeat	chr13(GA)n6545192	NonProperStrand	1	1	-inf
chr9	34989448	34989539	LTR	MTD	MaLR	chr9MTD34989174	NonProperStrand	1	chr9	34989685	34989785	LTR	ORR1D1	MaLR	chr9ORR1D134989597	NonProperStrand	1	1	-inf
chr15	85249514	85249614	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr4	86856192	86856282	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	1	-7.3339
chr4	134140287	134140313	protein_coding	Man1c1	exon	ENSMUSG00000037306	ProperStrand	70	chr5	34403876	34403967	protein_coding	Poln	intron	ENSMUSG00000045102	NonProperStrand	133	1	-10.1144
chr10	52269993	52270062	LINE	L1Md_F2	L1	chr10L1Md_F252268428	NonProperStrand	3	chr10	52266585	52266660	LTR	ETnERV-int	ERVK	chr10ETnERV-int52266606	NonProperStrand	1	1	-inf
chr10	26301619	26301640	LINE	L1Md_F2	L1	chr10L1Md_F226297795	ProperStrand	2	chr11	84250014	84250106	protein_coding	Aatf	intron	ENSMUSG00000018697	NonProperStrand	44	2	-inf
chr11	69073518	69073582	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	chr13	44869593	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-9.6528
chr4	8338863	8338963	LINE	L1Md_F	L1	chr4L1Md_F8338558	NonProperStrand	1	chr4	8339153	8339243	LINE	L1_Mus2	L1	chr4L1_Mus28339171	NonProperStrand	1	1	-inf
chr7	80044496	80044656	Other	RMER1B	Other	chr7RMER1B80044500	ProperStrand	9	chr7	80044410	80044508	Other	RMER1C	Other	chr7RMER1C80044240	NonProperStrand	8	8	-inf
chr13	36079030	36079088	protein_coding	Lyrm4	intron	ENSMUSG00000046573	ProperStrand	53	chr13	36060403	36060451	protein_coding	Ppp1r3g	utr5	ENSMUSG00000050423	NonProperStrand	17	1	-14.8313
chr1	143753455	143753474	LINE	L1_Mus2	L1	chr1L1_Mus2143753204	NonProperStrand	1	chr8	106904296	106904405	protein_coding	Cmtm4	intron	ENSMUSG00000051578	NonProperStrand	44	1	-inf
chr2	137106476	137106564	LINE	L1MEc	L1	chr2L1MEc137106342	NonProperStrand	1	chr2	137109479	137109524	LINE	Lx9	L1	chr2Lx9137109354	ProperStrand	1	1	-inf
chr6	128321210	128321348	protein_coding-noncoding	Foxm1	utr5	ENSMUSG00000001517	NonProperStrand	1	chr6	128321837	128321858	protein_coding	Foxm1	intron	ENSMUSG00000001517	NonProperStrand	9	1	-inf
chr6	113077686	113105008	LTR	MT2B	ERVL	chr6MT2B113104937	ProperStrand	3	chr6	113077584	113077674	protein_coding	Setd5	intron	ENSMUSG00000034269	ProperStrand	29	2	-21.0244
chr17	39847864	39847898	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	77901293	77901405	protein_coding	Pdxk	utr3	ENSMUSG00000032788	ProperStrand	5	1	-3.2379
chr12	20654070	20654160	SINE	B1_Mur4	Alu	chr12B1_Mur420654008	ProperStrand	5	chr12	20654191	20654291	SINE	ID_B1	B4	chr12ID_B120654192	ProperStrand	5	5	-inf
chrX	134069710	134069810	LINE	L1Md_F	L1	chrXL1Md_F134066592	NonProperStrand	2	chr17	39847257	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr8	95345553	95345572	LTR	ORR1A2	MaLR	chr8ORR1A295345243	NonProperStrand	1	chr13	97190570	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39847531	39847606	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	88895418	88895498	protein_coding	Rusc1	exon	ENSMUSG00000041263	NonProperStrand	3	1	-4.3512
chr12	76348643	76348686	LINE	L1Md_F2	L1	chr12L1Md_F276343542	ProperStrand	3	chr8	80765059	80765131	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-13.6420
chr5	115143042	115143090	LTR	RMER10B	ERVL	chr5RMER10B115143039	NonProperStrand	1	chr5	115145332	115145406	Simple_repeat	(ATG)n	Simple_repeat	chr5(ATG)n115145350	NonProperStrand	1	1	-inf
chr7	15680924	15681014	LINE	L1Md_F	L1	chr7L1Md_F15676155	ProperStrand	1	chr7	15681605	15681705	LTR	IAPEY2_LTR	ERVK	chr7IAPEY2_LTR15681631	ProperStrand	1	1	-inf
chr5	57729325	57729343	LINE	Lx9	L1	chr5Lx957729178	NonProperStrand	1	chr2	37868413	37868506	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	1	-inf
chr10	83599769	83599859	LINE	L1ME4a	L1	chr10L1ME4a83599620	NonProperStrand	1	chr10	83599857	83599957	LTR	LTR33	ERVL	chr10LTR3383599849	ProperStrand	1	1	-inf
chr3	57163486	57163509	LINE	L1Md_F2	L1	chr3L1Md_F257159135	ProperStrand	2	chr11	35278666	35278699	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	2	-inf
chr7	13030736	13030802	pseudogene	Vmn2r-ps53	.	ENSMUSG00000092583	ProperStrand	40	chr16	23110837	23110893	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-12.7116
chr2	154492922	154492997	protein_coding	Chmp4b	intron	ENSMUSG00000038467	ProperStrand	81	chr2	154450246	154450311	protein_coding	Zfp341	intron	ENSMUSG00000059842	ProperStrand	110	1	-10.2015
chr1	30803940	30803992	LINE	L1Md_F2	L1	chr1L1Md_F230799678	ProperStrand	11	chr17	39843709	39843811	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-6.2585
chr1	161037650	161037676	LINE	L1MEc	L1	chr1L1MEc161037551	ProperStrand	11	chr17	39846644	39846874	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-3.3422
chr13	97478912	97479002	LTR	RLTR10	ERVK	chr13RLTR1097478775	NonProperStrand	3	chr9	114986340	114986440	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	1	-16.0859
chr11	3176543	3176594	LINE	L1_Mur2	L1	chr11L1_Mur23176156	ProperStrand	3	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr8	123266665	123266720	protein_coding-noncoding	Irf8	utr5	ENSMUSG00000041515	NonProperStrand	1	chr8	123267647	123267733	protein_coding	Irf8	exon	ENSMUSG00000041515	NonProperStrand	26	1	-inf
chr16	30342486	30342528	protein_coding	Atp13a3	intron	ENSMUSG00000022533	ProperStrand	59	chr16	37780523	37780625	protein_coding	Fstl1	intron	ENSMUSG00000022816	ProperStrand	39	1	-12.9276
chr17	39846580	39846709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	102136846	102136862	protein_coding	Gpr68	intron	ENSMUSG00000047415	ProperStrand	5	1	-3.1907
chr10	63222089	63222148	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	chr16	16993549	16993628	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	2	-14.1993
chr17	39845604	39845683	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr6	113469105	113469122	protein_coding	Tmem111	intron	ENSMUSG00000030286	NonProperStrand	2	1	-9.3724
chr12	40193681	40193771	LINE	L1_Mur1	L1	chr12L1_Mur140190562	ProperStrand	1	chr12	40194109	40194209	LINE	L1_Mur1	L1	chr12L1_Mur140193869	ProperStrand	1	1	-inf
chr2	105343508	105343598	LINE	L2	L2	chr2L2105343176	ProperStrand	1	chr2	105343682	105343782	LTR	ORR1D2	MaLR	chr2ORR1D2105343628	NonProperStrand	1	1	-inf
chr17	33334541	33334557	SINE	B4A	B4	chr17B4A33334432	NonProperStrand	1	chr12	17396431	17396556	protein_coding	Nol10	intron	ENSMUSG00000061458	ProperStrand	49	1	-inf
chr2	154884391	154887733	SINE	B2_Mm1a	B2	chr2B2_Mm1a154884289	NonProperStrand	5	chr1	36682044	36682119	protein_coding	Fam178b	intron	ENSMUSG00000046337	ProperStrand	47	1	-17.7733
chr17	39847666	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	85492466	85522551	protein_coding	Cyyr1	intron	ENSMUSG00000041134	ProperStrand	11	2	-3.4077
chrX	116905907	116905997	LINE	L1_Mur1	L1	chrXL1_Mur1116904872	NonProperStrand	1	chrX	116906345	116906445	LTR	RLTR10D	ERVK	chrXRLTR10D116906276	NonProperStrand	1	1	-inf
chr15	31598915	31599015	LINE	Lx9	L1	chr15Lx931598797	NonProperStrand	1	chr15	31598710	31598800	LTR	RMER19A	ERVK	chr15RMER19A31598076	NonProperStrand	1	1	-inf
chr3	40817085	40817123	LINE	Lx5	L1	chr3Lx540817002	NonProperStrand	1	chr13	97190562	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr2	83750969	83751038	LINE	L1Md_F2	L1	chr2L1Md_F283746853	NonProperStrand	1	chr7	24888396	24888916	protein_coding	Zfp180	intron	ENSMUSG00000057101	ProperStrand	154	1	-inf
chr11	4919532	4919617	protein_coding	Ap1b1	intron	ENSMUSG00000009090	ProperStrand	57	chr4	151225776	151225844	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	2	-15.0064
chr12	111966925	111966982	LINE	Lx5	L1	chr12Lx5111966811	ProperStrand	2	chr17	39846807	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr12	111579284	111579361	LINE	L1_Mus2	L1	chr12L1_Mus2111579196	ProperStrand	1	chr6	33510241	33510305	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-inf
chr2	32792655	32792718	protein_coding	Lrsam1	intron	ENSMUSG00000026792	ProperStrand	24	chr10	43200817	43200837	protein_coding	Bend3	intron	ENSMUSG00000038214	ProperStrand	31	1	-15.2274
chr17	33632342	33632435	LTR	RMER6A	ERVK	chr17RMER6A33631879	NonProperStrand	1	chr9	123461954	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr19	55668271	55668361	protein_coding	Vti1a	intron	ENSMUSG00000024983	NonProperStrand	18	chr19	55653802	55653902	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	1	-11.4356
chr13	109349677	109349782	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr7	97549701	97549727	protein_coding	Sytl2	intron	ENSMUSG00000030616	NonProperStrand	2	1	-15.4419
chrX	162785136	162785183	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	chr11	101604937	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-13.1446
chr13	64150679	64150708	LINE	L1MB5	L1	chr13L1MB564150451	NonProperStrand	5	chr13	64150912	64151036	LINE	L1MB5	L1	chr13L1MB564150934	NonProperStrand	1	1	-inf
chrX	87238364	87238398	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr1	136920240	136920332	protein_coding	Lgr6	intron	ENSMUSG00000042793	ProperStrand	106	1	-8.3434
chr1	143503902	143504002	LTR	BGLII	ERVK	chr1BGLII143503814	ProperStrand	1	chr1	143504093	143504183	LTR	BGLII	ERVK	chr1BGLII143504073	ProperStrand	1	1	-inf
chr4	117155020	117155075	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	chr11	70926107	70926172	protein_coding	Nlrp1a	intron	ENSMUSG00000069830	NonProperStrand	19	1	-11.5750
chr1	63226937	63227000	protein_coding	Eef1b2	utr3	ENSMUSG00000025967	ProperStrand	28	chr1	63229532	63229617	protein_coding	Gpr1	utr3	ENSMUSG00000046856	NonProperStrand	66	1	-13.3733
chr1	16103513	16103588	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	chr13	49687467	49688161	protein_coding	Omd	exon	ENSMUSG00000048368	ProperStrand	13	1	-14.6494
chr6	125122542	125122911	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	78	chr10	105925872	105925962	protein_coding	Ppfia2	intron	ENSMUSG00000053825	ProperStrand	11	1	-14.9653
chr14	78715102	78715169	LINE	L1_Mus2	L1	chr14L1_Mus278714456	NonProperStrand	1	chr9	123461957	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	20651759	20660370	protein_coding	Psmd2	exon	ENSMUSG00000006998	ProperStrand	34	chr9	123461903	123462032	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-5.8700
chr5	131812686	131812776	LTR	ORR1B2	MaLR	chr5ORR1B2131812673	NonProperStrand	1	chr5	131812601	131812701	SINE	B4A	B4	chr5B4A131812400	ProperStrand	1	1	-inf
chr3	16183415	16183469	LINE	Lx5	L1	chr3Lx516183160	NonProperStrand	3	chr17	39846940	39847004	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	152354753	152354845	LTR	RLTR33	ERVK	chr4RLTR33152354235	NonProperStrand	1	1	-inf
chr19	3874303	3874403	protein_coding	Chka	intron	ENSMUSG00000024843	ProperStrand	73	chr12	3598224	3598314	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	1	-10.1705
chr15	53184495	53184598	DNA	MER5A	MER1_type	chr15MER5A53184444	ProperStrand	1	chr4	32757745	32757789	protein_coding	Mdn1	intron	ENSMUSG00000058006	ProperStrand	53	1	-inf
chr17	39848036	39848067	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	34375377	34389444	pseudogene	Gm12767	.	ENSMUSG00000083381	ProperStrand	3	1	-4.3512
chr10	128115064	128115107	protein_coding	Rab5b	utr3	ENSMUSG00000000711	NonProperStrand	89	chr1	58501602	58501706	protein_coding	Ppil3	utr5	ENSMUSG00000026035	ProperStrand	12	1	-14.5166
chr16	69972720	69972810	LTR	MLT1C	MaLR	chr16MLT1C69972655	NonProperStrand	1	chr16	69972531	69972631	LTR	RLTR31A_Mm	ERVK	chr16RLTR31A_Mm69972095	NonProperStrand	1	1	-inf
chr5	143891670	143891760	SINE	B1_Mus1	Alu	chr5B1_Mus1143891632	ProperStrand	6	chr5	143891757	143891857	Simple_repeat	(GAAA)n	Simple_repeat	chr5(GAAA)n143891748	ProperStrand	6	6	-inf
chr10	128423474	128423504	LTR	MTB_Mm	MaLR	chr10MTB_Mm128423451	NonProperStrand	1	chr16	22425903	22426027	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	1	-inf
chr10	42908180	42908280	LINE	Lx5	L1	chr10Lx542908025	NonProperStrand	1	chr10	42907924	42908014	LTR	ORR1A3	MaLR	chr10ORR1A342907725	NonProperStrand	1	1	-inf
chr17	39847381	39847831	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	65806583	65812749	protein_coding	Zfp532	intron	ENSMUSG00000042439	ProperStrand	10	2	-3.6759
chr13	24472588	24472620	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	chr13	8767223	8767339	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	1	-14.8752
chr19	10573223	10573280	SINE	B3A	B2	chr19B3A10573164	ProperStrand	2	chr19	10572673	10572727	SINE	ID_B1	B4	chr19ID_B110572616	ProperStrand	2	2	-inf
chr2	112363248	112363327	protein_coding	Aven	intron	ENSMUSG00000003604	NonProperStrand	8	chr9	123461957	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr1	100310889	100310979	LINE	L1Md_A	L1	chr1L1Md_A100309783	NonProperStrand	2	chr4	136321471	136321571	protein_coding	Ephb2	intron	ENSMUSG00000028664	ProperStrand	4	1	-22.1285
chr17	39847677	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	69742392	69742416	SINE	B1_Mus2	Alu	chr11B1_Mus269742278	NonProperStrand	1	1	-inf
chr13	27371675	27371775	LINE	L1_Mur3	L1	chr13L1_Mur327371314	NonProperStrand	1	chr7	47188355	47188444	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	1	-inf
chr3	37525454	37525481	LINE	Lx5	L1	chr3Lx537524960	NonProperStrand	1	chr17	39846748	39846765	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	27242214	27242304	SINE	PB1D9	Alu	chr3PB1D927242231	NonProperStrand	3	chr7	112840480	112840580	protein_coding	Dnhd1	intron	ENSMUSG00000030882	ProperStrand	238	1	-15.6319
chr10	42256313	42256413	SINE	B3A	B2	chr10B3A42256313	NonProperStrand	2	chr10	42256462	42256552	SINE	B4A	B4	chr10B4A42256466	NonProperStrand	2	2	-inf
chr5	103802119	103802207	LINE	Lx9	L1	chr5Lx9103801706	ProperStrand	2	chr9	123462082	123462139	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847274	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	101894964	101894980	Other	RMER1C	Other	chr5RMER1C101894124	NonProperStrand	1	1	-inf
chr4	118436833	118436978	LINE	L1Md_F2	L1	chr4L1Md_F2118433747	ProperStrand	10	chr9	20890761	20890815	protein_coding	Raver1	exon	ENSMUSG00000010205	NonProperStrand	43	1	-16.3916
chr17	27764397	27764497	SINE	B2_Mm2	B2	chr17B2_Mm227764371	ProperStrand	3	chr17	27764539	27764629	SINE	RSINE1	B4	chr17RSINE127764557	ProperStrand	3	3	-inf
chr16	32914433	32914533	protein_coding	Lrch3	intron	ENSMUSG00000022801	ProperStrand	84	chr8	125465540	125465630	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-7.3713
chr8	78690839	78690946	LINE	L1Md_F3	L1	chr8L1Md_F378687785	NonProperStrand	2	chr17	39846967	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr12	87437686	87437760	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	78	chr16	62802530	62802550	protein_coding	Arl13b	intron	ENSMUSG00000022911	ProperStrand	24	1	-13.3515
chr4	148015305	148015387	LTR	RLTR14	ERV1	chr4RLTR14148015110	ProperStrand	4	chr4	148006046	148006085	SINE	B2_Mm2	B2	chr4B2_Mm2148006051	NonProperStrand	1	1	-inf
chr15	99603003	99603021	antisense	Gm17058	.	ENSMUSG00000090406	NonProperStrand	10	chr5	142904246	142904391	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-11.9367
chr2	150200190	150200217	LINE	L1Md_F2	L1	chr2L1Md_F2150199632	NonProperStrand	1	chr17	39847441	39847458	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	25262269	25262401	SINE	B1_Mus2	Alu	chr17B1_Mus225262238	NonProperStrand	5	chr17	25262384	25264790	Simple_repeat	(GGAGAA)n	Simple_repeat	chr17(GGAGAA)n25262378	NonProperStrand	6	4	-inf
chr17	43299079	43299179	LINE	L1_Mur2	L1	chr17L1_Mur243298547	ProperStrand	1	chr17	43299443	43299533	LINE	Lx5	L1	chr17Lx543299289	NonProperStrand	1	1	-inf
chr8	104349821	104349899	LINE	L1MB1	L1	chr8L1MB1104349789	ProperStrand	1	chr8	104350752	104350813	LINE	Lx2B	L1	chr8Lx2B104350438	NonProperStrand	1	1	-inf
chr11	33480515	33480532	LTR	MTD	MaLR	chr11MTD33480389	ProperStrand	7	chr2	102829379	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-14.3050
chr9	15121277	15121367	protein_coding	Taf1d	utr3	ENSMUSG00000031939	ProperStrand	1	chr9	15121516	15121616	protein_coding	5830418K08Rik	utr3	ENSMUSG00000046111	NonProperStrand	1	1	-inf
chr1	100835426	100835526	LINE	L1_Mur1	L1	chr1L1_Mur1100835159	ProperStrand	1	chr1	100835023	100835113	LINE	L1_Mus1	L1	chr1L1_Mus1100834681	ProperStrand	1	1	-inf
chr3	153637436	153637538	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr8	106761309	106761331	protein_coding	Tk2	intron	ENSMUSG00000035824	ProperStrand	8	1	-13.0036
chr15	81022024	81022124	lincRNA	4930483J18Rik	intron	ENSMUSG00000047938	ProperStrand	1	chr15	81020498	81020588	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	1	-inf
chr5	117379157	117379247	LTR	RLTR20D	ERVK	chr5RLTR20D117379064	NonProperStrand	5	chr5	117379255	117379355	LTR	RLTR20D	ERVK	chr5RLTR20D117379221	NonProperStrand	4	4	-inf
chr18	37742333	37742433	LTR	RMER19B	ERVK	chr18RMER19B37742298	ProperStrand	4	chr5	4076095	4076185	protein_coding	Akap9	intron	ENSMUSG00000040407	NonProperStrand	22	4	-inf
chr5	137300403	137302215	protein_coding	Emid2	intron	ENSMUSG00000004415	ProperStrand	82	chr6	91700376	91700397	protein_coding	Slc6a6	intron	ENSMUSG00000030096	ProperStrand	99	2	-16.3777
chr15	53264546	53265457	LINE	L1_Mur3	L1	chr15L1_Mur353264569	ProperStrand	18	chr15	53264060	53264590	LINE	Lx7	L1	chr15Lx753263343	ProperStrand	21	11	-20.7538
chr12	78350926	78350986	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr6	46570873	46570891	protein_coding	Cntnap2	intron	ENSMUSG00000039419	NonProperStrand	121	1	-4.5361
chr4	45852863	45852953	LTR	IAPEz-int	ERVK	chr4IAPEz-int45850132	NonProperStrand	1	chr4	45853266	45853366	LTR	IAPEz-int	ERVK	chr4IAPEz-int45853212	NonProperStrand	1	1	-inf
chr17	39846432	39846458	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	28261030	28261046	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n28261024	ProperStrand	1	1	-inf
chr9	123461802	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	127029380	127029759	protein_coding	Gjb4	utr5	ENSMUSG00000046623	NonProperStrand	20	2	-5.3310
chr19	56591122	56591159	SINE	B4A	B4	chr19B4A56590916	NonProperStrand	1	chr8	88264814	88264888	protein_coding	Itfg1	intron	ENSMUSG00000031703	NonProperStrand	27	1	-inf
chr11	109011813	109011852	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	76302887	76302966	protein_coding	Bop1	intron	ENSMUSG00000022557	ProperStrand	8	1	-10.2064
chr6	116153030	116153159	SINE	B3	B2	chr6B3116153060	ProperStrand	1	chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-inf
chr19	45335244	45335263	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr16	19883804	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	2	-13.5377
chr17	39847763	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	152275440	152275488	SINE	B1_Mur3	Alu	chr2B1_Mur3152275364	ProperStrand	4	1	-3.7035
chr6	88493599	88493689	LTR	MTA_Mm-int	MaLR	chr6MTA_Mm-int88492806	ProperStrand	4	chr6	88493976	88494009	LTR	MTA_Mm	MaLR	chr6MTA_Mm88493895	ProperStrand	1	1	-inf
chr8	25535612	25535700	lincRNA	Gm16625	intron	ENSMUSG00000084900	ProperStrand	52	chr17	57108102	57108124	protein_coding	Acer1	intron	ENSMUSG00000045019	ProperStrand	5	1	-17.5041
chr1	151823678	151823768	LTR	MLT2B2	ERVL	chr1MLT2B2151823339	ProperStrand	2	chr1	151823773	151823873	Simple_repeat	(TCTA)n	Simple_repeat	chr1(TCTA)n151823771	ProperStrand	2	2	-inf
chr11	115417890	115418440	SINE	PB1D10	Alu	chr11PB1D10115418311	NonProperStrand	3	chr11	115418446	115419911	SINE	RSINE1	B4	chr11RSINE1115418427	NonProperStrand	3	3	-inf
chr4	119275703	119275749	protein_coding-noncoding	Foxj3	utr5	ENSMUSG00000032998	NonProperStrand	7	chr4	119277460	119277508	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	1	-15.0529
chr8	107163347	107163400	SINE	B1_Mur2	Alu	chr8B1_Mur2107163284	NonProperStrand	1	chr8	107163564	107163644	SINE	B3	B2	chr8B3107163433	NonProperStrand	1	1	-inf
chr15	83569081	83569181	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n83568914	NonProperStrand	1	chr15	83569207	83569297	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n83569101	NonProperStrand	1	1	-inf
chr8	97850200	97850300	protein_coding	Zfp319	utr3	ENSMUSG00000046556	NonProperStrand	2	chr8	97849787	97849877	protein_coding	Tepp	utr3	ENSMUSG00000090206	ProperStrand	1	1	-inf
chr8	91326350	91326450	LINE	L1M5	L1	chr8L1M591325990	NonProperStrand	1	chr10	41680934	41681024	protein_coding	Armc2	intron	ENSMUSG00000071324	ProperStrand	32	1	-inf
chr13	62048892	62048992	LTR	MT2B	ERVL	chr13MT2B62048797	ProperStrand	1	chr13	97190576	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr15	51980539	51980595	DNA	URR1B	MER1_type	chr15URR1B51980399	ProperStrand	3	chr15	34091283	34091322	LINE	L1_Mus2	L1	chr15L1_Mus234091017	NonProperStrand	1	1	-inf
chr6	3201463	3201526	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	59076322	59076338	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	1	-4.9626
chr13	53142456	53142556	LINE	L1Md_T	L1	chr13L1Md_T53137632	NonProperStrand	4	chr13	53142828	53142918	LINE	L1Md_T	L1	chr13L1Md_T53142789	NonProperStrand	2	2	-inf
chr9	123461942	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	136506625	136516735	protein_coding	Kdm5b	intron	ENSMUSG00000042207	ProperStrand	42	2	-3.3036
chr12	84146505	84146521	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	72	chr17	47523952	47524054	protein_coding	Guca1b	intron	ENSMUSG00000023979	ProperStrand	21	1	-13.7849
chr2	22744837	22744925	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	146260993	146261237	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	59	-20.1238
chr9	47557336	47557355	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	chr1	72226297	72226428	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-8.8364
chrX	151631967	151631984	SINE	PB1D10	Alu	chrXPB1D10151631907	ProperStrand	1	chr11	85602434	85602537	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-inf
chr17	36211869	36211890	antisense	BC023719	.	ENSMUSG00000092365	ProperStrand	3	chr15	53321490	53321606	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-14.7080
chr9	123461802	123462184	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	97190541	97190632	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	123	-inf
chr1	91953064	91953155	protein_coding	Iqca	intron	ENSMUSG00000026301	ProperStrand	175	chr2	76711146	76711163	protein_coding	Ttn	exon	ENSMUSG00000051747	NonProperStrand	37	1	-10.8500
chr10	20328071	20328161	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr19	8973009	8977318	protein_coding	Ganab	intron	ENSMUSG00000071650	ProperStrand	138	2	-11.3497
chr18	67316642	67316736	protein_coding	Gnal	intron	ENSMUSG00000024524	ProperStrand	146	chr9	118674950	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.2521
chr14	121166675	121166695	LTR	ORR1C2	MaLR	chr14ORR1C2121166425	NonProperStrand	1	chr11	67037021	67037132	protein_coding	Myh1	intron	ENSMUSG00000056328	ProperStrand	3	1	-inf
chr6	131376127	131376179	LTR	RMER16	ERVK	chr6RMER16131376107	ProperStrand	18	chr14	64747260	64747322	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	2	-19.4291
chr17	39847199	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	54806653	54806671	protein_coding	Cdhr2	intron	ENSMUSG00000034918	NonProperStrand	2	1	-6.5615
chr16	23108954	23109017	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr5	121185506	121185559	protein_coding-noncoding	Oas2	utr3	ENSMUSG00000032690	ProperStrand	1	1	-inf
chr1	13596902	13596992	LTR	MT2A	ERVL	chr1MT2A13596911	NonProperStrand	1	chr1	13596783	13596883	LTR	ORR1D1-int	MaLR	chr1ORR1D1-int13596283	NonProperStrand	1	1	-inf
chr14	75847903	75847958	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr9	78200790	78200835	protein_coding	Gsta2	intron	ENSMUSG00000057933	NonProperStrand	15	1	-16.2483
chr7	126196668	126196707	LINE	L1Md_A	L1	chr7L1Md_A126193264	ProperStrand	5	chr7	126186749	126186778	LINE	Lx9	L1	chr7Lx9126185279	ProperStrand	3	1	-inf
chr2	3473751	3473842	LTR	MTEa-int	MaLR	chr2MTEa-int3473740	ProperStrand	5	chr2	3473645	3473745	LTR	MTEa	MaLR	chr2MTEa3473546	ProperStrand	5	5	-inf
chr11	109011828	109011872	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	24720681	24720972	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-3.2302
chr17	39847313	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	28832098	28832177	protein_coding	Psmc4	intron	ENSMUSG00000030603	NonProperStrand	8	1	-3.3803
chr9	46207794	46207848	LTR	MLT1A0-int	MaLR	chr9MLT1A0-int46207693	ProperStrand	1	chr17	83456273	83456335	Simple_repeat	(TCTA)n	Simple_repeat	chr17(TCTA)n83456165	ProperStrand	3	1	-inf
chr18	32844831	32844900	lincRNA	4930455D15Rik	intron	ENSMUSG00000085056	NonProperStrand	24	chr12	56904058	56904122	protein_coding	Ralgapa1	intron	ENSMUSG00000021027	NonProperStrand	8	1	-18.1966
chr14	17052650	17052740	LINE	L1_Mm	L1	chr14L1_Mm17052052	NonProperStrand	1	chr14	17053087	17053187	LINE	L1_Mus3	L1	chr14L1_Mus317052810	NonProperStrand	1	1	-inf
chr15	82898160	82898234	LTR	ORR1B1	MaLR	chr15ORR1B182897892	ProperStrand	2	chr15	82891673	82891757	SINE	B2_Mm1t	B2	chr15B2_Mm1t82891690	ProperStrand	1	1	-inf
chr6	115799928	115799984	protein_coding	Mbd4	intron	ENSMUSG00000030322	NonProperStrand	23	chr6	115803928	115803994	protein_coding	Ift122	intron	ENSMUSG00000030323	ProperStrand	9	1	-17.9785
chr6	3201469	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	123612643	123612694	protein_coding	Rragc	intron	ENSMUSG00000028646	NonProperStrand	41	1	-3.5873
chr11	60707409	60708563	SINE	B1_Mur1	Alu	chr11B1_Mur160707549	NonProperStrand	6	chr11	60708616	60708807	SINE	B3	B2	chr11B360708579	ProperStrand	6	6	-inf
chr10	67118962	67119042	DNA	MER58A	MER1_type	chr10MER58A67118848	ProperStrand	3	chr17	39846818	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	48286577	48286677	LINE	L1_Mus1	L1	chr17L1_Mus148286537	ProperStrand	1	chr17	48281838	48281928	protein_coding	9830107B12Rik	intron	ENSMUSG00000073386	NonProperStrand	1	1	-inf
chr17	39847259	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	98161182	98163806	SINE	MIRb	MIR	chr11MIRb98161100	ProperStrand	1	1	-inf
chr7	100445846	100445897	LINE	L1Md_F2	L1	chr7L1Md_F2100444474	ProperStrand	2	chr17	39847440	39847534	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr19	18623732	18623891	LINE	L1MA6	L1	chr19L1MA618623629	ProperStrand	4	chr19	18623942	18624032	LINE	Lx	L1	chr19Lx18623872	ProperStrand	8	4	-inf
chrX	85698754	85698829	LINE	L1_Mus1	L1	chrXL1_Mus185698762	NonProperStrand	1	chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	20930603	20930681	protein_coding	Tyk2	intron	ENSMUSG00000032175	ProperStrand	108	chr11	101604971	101605038	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-11.2912
chr2	20743744	20743834	LINE	L1MA4	L1	chr2L1MA420743470	NonProperStrand	2	chr2	20743866	20743966	SINE	B3	B2	chr2B320743809	NonProperStrand	1	1	-inf
chr1	179318000	179318059	LINE	L1_Mus3	L1	chr1L1_Mus3179317584	ProperStrand	1	chr5	146261045	146261094	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chrX	9219741	9219841	LTR	IAPEz-int	ERVK	chrXIAPEz-int9219558	ProperStrand	1	chrX	9219475	9219565	LTR	IAPLTR1a_Mm	ERVK	chrXIAPLTR1a_Mm9219222	ProperStrand	1	1	-inf
chr19	15905759	15905849	LTR	ORR1C1	MaLR	chr19ORR1C115905737	NonProperStrand	13	chr2	150809100	150809200	protein_coding	Ninl	intron	ENSMUSG00000068115	NonProperStrand	24	4	-inf
chrX	7709397	7709415	protein_coding-noncoding	Wdr13	utr3	ENSMUSG00000031166	NonProperStrand	3	chr2	26231083	26231166	protein_coding	Snapc4	intron	ENSMUSG00000036281	ProperStrand	21	1	-19.5588
chr4	111982634	111982674	LINE	Lx5	L1	chr4Lx5111982549	ProperStrand	1	chr15	59037039	59037122	SINE	MIR3	MIR	chr15MIR359036955	NonProperStrand	2	1	-inf
chr17	39846883	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	26393383	26393539	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n26393507	ProperStrand	1	1	-inf
chr13	24257617	24257695	protein_coding	Lrrc16a	intron	ENSMUSG00000021338	ProperStrand	112	chr7	6354783	6354850	protein_coding	AC188461.4	intron	ENSMUSG00000093536	ProperStrand	3	2	-inf
chr14	89291374	89291464	LTR	RLTR10D	ERVK	chr14RLTR10D89291344	ProperStrand	1	chr3	8947161	8947261	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	1	-inf
chr1	100180180	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr6	38568547	38568622	LTR	ORR1A2	MaLR	chr6ORR1A238568404	NonProperStrand	1	1	-inf
chr1	4145984	4146074	LINE	L1Md_F2	L1	chr1L1Md_F24145948	NonProperStrand	2	chr1	4145827	4145927	LTR	ORR1A2	MaLR	chr1ORR1A24145633	NonProperStrand	1	1	-inf
chr17	71407489	71407541	protein_coding	Myom1	intron	ENSMUSG00000024049	NonProperStrand	61	chr4	101247342	101247384	protein_coding	Dnajc6	intron	ENSMUSG00000028528	NonProperStrand	58	1	-12.0574
chr14	44973809	44973909	SINE	B3	B2	chr14B344973820	ProperStrand	1	chr4	95633087	95633177	lincRNA	9530080O11Rik	intron	ENSMUSG00000044125	NonProperStrand	1	1	-inf
chr1	192959624	192959653	LINE	Lx8	L1	chr1Lx8192959590	NonProperStrand	2	chr17	39846414	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr8	71680899	71680936	LINE	L1MA4	L1	chr8L1MA471680701	ProperStrand	1	chr17	39846759	39846781	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	chr5	64204736	64204858	protein_coding	0610040J01Rik	intron	ENSMUSG00000060512	ProperStrand	56	1	-12.6544
chr11	23742533	23742549	LTR	ORR1A1-int	MaLR	chr11ORR1A1-int23741297	ProperStrand	1	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	39846352	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrY	1278899	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	5	-3.3615
chr18	37885406	37885482	protein_coding	Pcdhga9	utr5	ENSMUSG00000023036	NonProperStrand	112	chr19	5953902	5953949	protein_coding	Pola2	intron	ENSMUSG00000024833	ProperStrand	80	1	-10.1904
chr17	28583449	28583519	protein_coding	Fkbp5	intron	ENSMUSG00000024222	ProperStrand	81	chr3	79479064	79479093	protein_coding	Rxfp1	intron	ENSMUSG00000034009	ProperStrand	199	1	-9.0164
chr1	157115326	157115392	LINE	L1Md_F2	L1	chr1L1Md_F2157110526	ProperStrand	1	chr4	83351622	83351698	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-inf
chr3	51441107	51441197	DNA	RCHARR1	MER1_type	chr3RCHARR151441108	NonProperStrand	1	chr3	51441309	51441409	DNA	RCHARR1	MER1_type	chr3RCHARR151441205	NonProperStrand	1	1	-inf
chr2	119958177	119958214	protein_coding	Ehd4	intron	ENSMUSG00000027293	NonProperStrand	78	chr13	97190541	97190573	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6162
chr7	114047032	114047118	LINE	L1_Mm	L1	chr7L1_Mm114046135	ProperStrand	1	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr5	146261005	146261095	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	139219949	139220049	protein_coding	Tas1r2	intron	ENSMUSG00000028738	ProperStrand	90	1	-4.2849
chr6	116082338	116082427	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	chr13	97190562	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.1549
chr10	117161019	117161109	SINE	B1_Mm	Alu	chr10B1_Mm117160987	ProperStrand	1	chr10	117161172	117161272	SINE	ID4_	ID	chr10ID4_117161161	ProperStrand	1	1	-inf
chr2	104353213	104353303	LINE	L1Md_F2	L1	chr2L1Md_F2104352646	ProperStrand	1	chr4	97617238	97617338	protein_coding	Nfia	intron	ENSMUSG00000028565	NonProperStrand	9	1	-inf
chr18	14716753	14716797	LINE	L1_Mus2	L1	chr18L1_Mus214716022	ProperStrand	2	chr5	149696132	149696165	protein_coding	Katnal1	intron	ENSMUSG00000041298	NonProperStrand	29	1	-19.5186
chr4	64640899	64640999	LINE	L1_Mus1	L1	chr4L1_Mus164640790	ProperStrand	1	chr4	64640594	64640684	Other	RMER1C	Other	chr4RMER1C64640615	ProperStrand	1	1	-inf
chr11	103935071	103935171	LTR	ORR1E-int	MaLR	chr11ORR1E-int103934461	NonProperStrand	1	chr11	103935375	103935465	LTR	ORR1E	MaLR	chr11ORR1E103935293	NonProperStrand	1	1	-inf
chr7	140951743	140951843	protein_coding-noncoding	Dhx32	utr3	ENSMUSG00000030986	ProperStrand	1	chr7	140950920	140951010	protein_coding	Dhx32	intron	ENSMUSG00000030986	ProperStrand	21	1	-inf
chr5	146261020	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	82674328	82674396	protein_coding	Mbp	intron	ENSMUSG00000041607	NonProperStrand	24	1	-6.8742
chr9	123462058	123462127	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	103094188	103094204	protein_coding	Srprb	intron	ENSMUSG00000032553	ProperStrand	4	1	-6.3300
chr2	18146810	18146871	protein_coding	Dnajc1	intron	ENSMUSG00000026740	NonProperStrand	79	chr6	94230113	94230165	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	2	-9.3674
chr11	104829345	104829435	SINE	RSINE1	B4	chr11RSINE1104829331	ProperStrand	1	chr11	104829686	104829786	Simple_repeat	(TAGA)n	Simple_repeat	chr11(TAGA)n104829493	ProperStrand	1	1	-inf
chr17	39847153	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	4	-3.4694
chr2	152275505	152277002	SINE	B2_Mm2	B2	chr2B2_Mm2152276837	NonProperStrand	9	chr2	152277015	152279106	SINE	B3	B2	chr2B3152278937	NonProperStrand	17	9	-inf
chr12	71203087	71203172	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	chr9	119102642	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	10	1	-15.4954
chr9	64175421	64175513	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr17	33829678	33829707	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-10.1489
chr11	78610389	78610435	SINE	B3A	B2	chr11B3A78610334	ProperStrand	1	chr13	113985547	113985630	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-inf
chr2	179972093	179972193	SINE	B3	B2	chr2B3179972078	NonProperStrand	3	chrX	133511191	133511281	protein_coding	Tmsb15l	intron	ENSMUSG00000072955	ProperStrand	3	1	-20.2168
chrX	77848041	77848057	LINE	L1Md_A	L1	chrXL1Md_A77841560	ProperStrand	1	chr17	39847804	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	107728890	107728910	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	chr18	21121752	21121847	protein_coding	Rnf125	intron	ENSMUSG00000033107	NonProperStrand	13	1	-15.8402
chr11	62319253	62319322	protein_coding	Pigl	intron	ENSMUSG00000014245	ProperStrand	32	chr2	5379293	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.7728
chr17	39843389	39843479	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr7	111076059	111076159	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	2	-3.4201
chr10	86048576	86048637	LTR	MERVL-int	ERVL	chr10MERVL-int86047290	ProperStrand	1	chr10	86049872	86049946	LTR	MT2C_Mm	ERVL	chr10MT2C_Mm86049811	ProperStrand	4	1	-inf
chr10	3704715	3704805	LINE	L1Md_F	L1	chr10L1Md_F3703123	ProperStrand	1	chrX	12655558	12655658	protein_coding	Usp9x	intron	ENSMUSG00000031010	ProperStrand	9	1	-inf
chr6	110313017	110313035	Simple_repeat	(TCTA)n	Simple_repeat	chr6(TCTA)n110313009	ProperStrand	2	chr11	76568350	76568492	protein_coding	Gosr1	intron	ENSMUSG00000010392	ProperStrand	90	2	-inf
chr9	66515742	66515758	LINE	L2	L2	chr9L266515391	ProperStrand	1	chr8	106638993	106639067	protein_coding	Cdh5	intron	ENSMUSG00000031871	ProperStrand	143	1	-inf
chr16	44354158	44354182	protein_coding	Spice1	intron	ENSMUSG00000043065	ProperStrand	38	chr11	33568863	33568997	protein_coding	Kcnip1	intron	ENSMUSG00000053519	NonProperStrand	100	1	-11.9180
chr9	50599712	50599753	protein_coding	Alg9	intron	ENSMUSG00000032059	NonProperStrand	20	chr1	72255084	72255196	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-13.5755
chr17	39848683	39848763	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	80262084	80262105	protein_coding	Cul3	utr3	ENSMUSG00000004364	ProperStrand	22	1	-3.4476
chr18	19671859	19671959	LTR	RMER6-int	ERVK	chr18RMER6-int19671752	ProperStrand	1	chr7	103550697	103550787	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr5	33512618	33512718	DNA	Charlie25	MER1_type	chr5Charlie2533512493	ProperStrand	21	chr5	33512755	33512845	LINE	L1Md_F2	L1	chr5L1Md_F233512756	NonProperStrand	15	4	-20.1427
chr3	75621451	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr2	34772771	34773179	LTR	ORR1A4-int	MaLR	chr2ORR1A4-int34772235	NonProperStrand	34	1	-14.0407
chr14	21640133	21640233	LINE	L1_Mus3	L1	chr14L1_Mus321640038	NonProperStrand	1	chr1	179960620	179960710	protein_coding	Gm16432	intron	ENSMUSG00000091476	ProperStrand	14	1	-inf
chr10	52305790	52305880	LINE	L1Md_A	L1	chr10L1Md_A52301538	NonProperStrand	5	chr2	77080876	77080976	protein_coding	Sestd1	intron	ENSMUSG00000042272	ProperStrand	17	1	-19.2464
chr17	39843797	39843894	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	53860698	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	3	-3.1206
chr17	39847677	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	96631617	96631705	LTR	MLT2B3	ERVL	chr7MLT2B396631538	NonProperStrand	1	1	-inf
chr17	39847330	39848066	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	83149653	83149796	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	15	-3.7102
chr9	123461957	123461976	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	112884007	112884178	protein_coding	Rrp8	intron	ENSMUSG00000030888	NonProperStrand	7	1	-5.1121
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr8	104363816	104363892	SINE	B1F	Alu	chr8B1F104363797	ProperStrand	1	1	-inf
chr15	86496822	86496922	LTR	MTEb	MaLR	chr15MTEb86496717	NonProperStrand	2	chr15	86497010	86497100	LTR	ORR1E	MaLR	chr15ORR1E86496988	NonProperStrand	2	2	-inf
chr8	126027764	126027801	protein_coding	Afg3l1	utr3	ENSMUSG00000031967	ProperStrand	18	chr8	126028483	126028593	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-9.3599
chr10	40258543	40258633	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr6	85361778	85361878	SINE	B3	B2	chr6B385361677	NonProperStrand	1	1	-inf
chr18	77514132	77514208	SINE	B2_Mm2	B2	chr18B2_Mm277514104	ProperStrand	1	chr1	181906393	181908302	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-inf
chr10	82714589	82714685	protein_coding	Slc41a2	intron	ENSMUSG00000034591	NonProperStrand	10	chr4	101424293	101424312	protein_coding	Lepr	intron	ENSMUSG00000057722	NonProperStrand	24	1	-17.5578
chr16	33483858	33483890	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	chr16	20229740	20229782	protein_coding	Yeats2	intron	ENSMUSG00000041215	ProperStrand	71	1	-10.0859
chr5	34334073	34334173	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int34333226	ProperStrand	2	chr5	34334185	34334275	LTR	MTA_Mm	MaLR	chr5MTA_Mm34334175	ProperStrand	2	2	-inf
chr12	78350964	78351054	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	66329779	66329879	protein_coding	Chrna9	intron	ENSMUSG00000029205	NonProperStrand	122	1	-4.5204
chr1	58022378	58022478	protein_coding-noncoding	Kctd18	utr3	ENSMUSG00000054770	NonProperStrand	9	chr1	58022260	58022350	protein_coding	Kctd18	exon	ENSMUSG00000054770	NonProperStrand	14	2	-20.5682
chr3	112901027	112901127	LINE	L1Md_F2	L1	chr3L1Md_F2112900855	ProperStrand	2	chr3	112900744	112900834	LTR	IAPLTR3	ERVK	chr3IAPLTR3112900542	ProperStrand	1	1	-inf
chr4	101505926	101506026	LINE	Lx9	L1	chr4Lx9101505932	ProperStrand	9	chr4	101505807	101505897	LTR	ORR1B1	MaLR	chr4ORR1B1101505727	ProperStrand	4	4	-inf
chr1	89674092	89674152	protein_coding	Atg16l1	intron	ENSMUSG00000026289	ProperStrand	119	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.8182
chr17	39846462	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	73842937	73843031	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n73842749	NonProperStrand	1	1	-inf
chrX	74270829	74271023	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int74269774	ProperStrand	7	chrX	74271019	74271835	SINE	B4A	B4	chrXB4A74271543	ProperStrand	14	7	-inf
chr16	61056333	61056454	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	4	chr17	39846394	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr5	132512224	132512270	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr9	70475919	70476015	protein_coding	Fam63b	intron	ENSMUSG00000042444	ProperStrand	34	1	-8.3453
chr17	54986826	54986846	LINE	L1_Mur1	L1	chr17L1_Mur154986797	NonProperStrand	2	chr2	94040575	94040661	SINE	MIRb	MIR	chr2MIRb94040574	NonProperStrand	1	1	-inf
chr17	39847531	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	22827569	22827660	LTR	ORR1D2	MaLR	chr9ORR1D222827418	ProperStrand	2	2	-inf
chr2	148815655	148815755	LINE	L1_Mur1	L1	chr2L1_Mur1148814592	NonProperStrand	1	chr2	148815943	148816033	LINE	L1_Mus2	L1	chr2L1_Mus2148815932	ProperStrand	1	1	-inf
chr12	7872599	7872699	LINE	L1_Mus2	L1	chr12L1_Mus27872536	NonProperStrand	1	chr12	7872860	7872950	LTR	RMER17B	ERVK	chr12RMER17B7872787	NonProperStrand	1	1	-inf
chr17	39843825	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr15	94200577	94200596	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	1	-3.5869
chr14	45638947	45638991	LINE	L1Md_T	L1	chr14L1Md_T45633331	ProperStrand	5	chr6	3201509	3201559	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-7.8442
chr4	130260708	130260741	protein_coding	Pum1	intron	ENSMUSG00000028580	NonProperStrand	34	chrX	108765234	108768044	protein_coding	Hdx	intron	ENSMUSG00000034551	ProperStrand	14	1	-16.1294
chr1	16102729	16102793	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	chr4	43581238	43581292	protein_coding	Gba2	intron	ENSMUSG00000028467	NonProperStrand	27	1	-13.1381
chr3	155169998	155170098	LINE	L2	L2	chr3L2155169944	NonProperStrand	1	chr3	156807140	156807230	protein_coding	Negr1	intron	ENSMUSG00000040037	NonProperStrand	17	1	-inf
chr9	107971799	107971866	protein_coding-noncoding	Rnf123	utr3	ENSMUSG00000041528	NonProperStrand	3	chr9	107972073	107972121	protein_coding	Rnf123	exon	ENSMUSG00000041528	NonProperStrand	29	1	-19.5983
chr17	39847173	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	117300715	117300772	SINE	RSINE1	B4	chr11RSINE1117300601	ProperStrand	1	1	-inf
chr1	87407689	87410742	lincRNA	Gm16092	intron	ENSMUSG00000089714	NonProperStrand	6	chr1	87436812	87436849	pseudogene	Gm7592	.	ENSMUSG00000090186	ProperStrand	36	2	-inf
chr11	30961405	30961505	protein_coding	Asb3	exon	ENSMUSG00000020305	ProperStrand	38	chr11	3730200	3730290	protein_coding	Osbp2	intron	ENSMUSG00000020435	NonProperStrand	65	1	-12.7854
chr10	98770821	98770911	LINE	L1Md_F2	L1	chr10L1Md_F298770800	ProperStrand	1	chr10	98770468	98770568	SINE	B4A	B4	chr10B4A98770424	ProperStrand	1	1	-inf
chr7	65299839	65299868	LINE	L1Md_T	L1	chr7L1Md_T65299251	NonProperStrand	1	chr9	123461930	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	61501136	61501156	protein_coding	Mipep	intron	ENSMUSG00000021993	NonProperStrand	22	chr1	133414146	133414234	protein_coding	Srgap2	intron	ENSMUSG00000026425	ProperStrand	73	1	-13.6651
chr16	30566033	30566133	protein_coding	Lsg1	intron	ENSMUSG00000022538	ProperStrand	31	chr1	89548611	89548701	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-9.3707
chr12	19984691	19984791	LINE	L1_Mm	L1	chr12L1_Mm19984545	ProperStrand	3	chr12	19310916	19311006	SINE	B1_Mus1	Alu	chr12B1_Mus119310908	ProperStrand	3	3	-inf
chr5	110786031	110786121	SINE	B1_Mus1	Alu	chr5B1_Mus1110786029	ProperStrand	7	chr5	110785890	110785990	Simple_repeat	(GAA)n	Simple_repeat	chr5(GAA)n110785856	NonProperStrand	15	1	-19.0068
chr2	16305644	16305673	protein_coding	Plxdc2	intron	ENSMUSG00000026748	NonProperStrand	13	chr17	30488621	30488649	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-10.3423
chr17	39847503	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	142826885	142826903	protein_coding	Ptpre	intron	ENSMUSG00000041836	ProperStrand	2	1	-5.4040
chr5	105814625	105814706	LINE	L1Md_F2	L1	chr5L1Md_F2105811820	NonProperStrand	19	chr4	117154095	117154161	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-11.5750
chr13	98873827	98873956	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr3	88686296	88686319	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	66	1	-10.1299
chr11	68043140	68043192	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	chr12	79725083	79725110	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-4.2276
chr5	31196497	31197008	protein_coding-noncoding	Agbl5	utr5	ENSMUSG00000029165	ProperStrand	1	chr5	31196212	31196246	protein_coding	Agbl5	intron	ENSMUSG00000029165	ProperStrand	1	1	-inf
chr8	73201582	73201672	protein_coding-noncoding	Lsm4	utr5	ENSMUSG00000031848	NonProperStrand	2	chr8	73201479	73201579	protein_coding	Lsm4	intron	ENSMUSG00000031848	NonProperStrand	8	2	-inf
chr14	31361093	31361184	Low_complexity	GA-rich	Low_complexity	chr14GA-rich31360976	ProperStrand	1	chr14	31360240	31363573	protein_coding	Tkt	intron	ENSMUSG00000021957	ProperStrand	2	1	-inf
chr14	55634362	55634378	protein_coding	Ngdn	utr5	ENSMUSG00000022204	NonProperStrand	18	chr6	120683567	120683681	protein_coding	Cecr2	intron	ENSMUSG00000071226	ProperStrand	59	1	-14.5007
chrX	160588991	160589007	protein_coding	Ace2	intron	ENSMUSG00000015405	NonProperStrand	17	chr7	99482785	99482905	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-9.9755
chr3	41202656	41202746	LINE	L1MEd	L1	chr3L1MEd41202623	ProperStrand	1	chr3	41202757	41202857	LTR	ORR1A4	MaLR	chr3ORR1A441202727	ProperStrand	1	1	-inf
chr6	125162603	125162846	LINE	L1MEd	L1	chr6L1MEd125162471	ProperStrand	31	chr8	79407203	79407222	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	1	-11.8669
chr17	12992131	12992148	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	chr4	150469625	150469652	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-8.6695
chr17	39847578	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	150088325	150088342	SINE	ID_B1	B4	chr4ID_B1150088167	ProperStrand	1	1	-inf
chr14	45380874	45380899	LTR	IAPEY3-int	ERVK	chr14IAPEY3-int45379901	NonProperStrand	9	chr17	39847257	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.1539
chr3	34046555	34046983	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr16	21604179	21604266	protein_coding	Vps8	intron	ENSMUSG00000033653	ProperStrand	86	1	-10.1368
chr7	126797339	126797392	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr9	36785648	36786002	protein_coding	Pknox2	intron	ENSMUSG00000035934	ProperStrand	37	1	-9.7461
chr4	132310308	132310361	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	ProperStrand	5	chr4	126242194	126242257	protein_coding	Clspn	exon	ENSMUSG00000042489	ProperStrand	8	2	-21.8124
chr17	39846952	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	6403835	6403898	SINE	B3A	B2	chr11B3A6403797	ProperStrand	2	1	-5.3533
chr7	134723422	134723534	protein_coding	Phkg2	intron	ENSMUSG00000030815	ProperStrand	8	chr9	78479855	78479901	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-11.6342
chr7	16022371	16022396	LINE	L1_Mus3	L1	chr7L1_Mus316022330	ProperStrand	1	chr7	16023634	16023691	LINE	L1_Mus3	L1	chr7L1_Mus316022863	ProperStrand	3	1	-inf
chr8	38458175	38458275	LTR	MTC-int	MaLR	chr8MTC-int38457101	NonProperStrand	1	chr8	103484766	103484856	SINE	ID_B1	B4	chr8ID_B1103484719	ProperStrand	1	1	-inf
chr13	40918251	40918338	LTR	MuLV-int	ERV1	chr13MuLV-int40917259	NonProperStrand	10	chr11	88569633	88569694	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-9.8998
chr14	87306145	87306164	protein_coding	Diap3	intron	ENSMUSG00000022021	NonProperStrand	38	chr8	125534573	125534669	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-8.9594
chr12	85101404	85101504	LTR	MTC-int	MaLR	chr12MTC-int85101307	ProperStrand	1	chr12	85101241	85101331	LTR	MTC	MaLR	chr12MTC85101240	ProperStrand	1	1	-inf
chr17	39847178	39847241	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	86860971	86861024	Simple_repeat	(TCTCCC)n	Simple_repeat	chr3(TCTCCC)n86860957	NonProperStrand	2	1	-6.5615
chr1	74440784	74440842	protein_coding	Ctdsp1	intron	ENSMUSG00000026176	NonProperStrand	10	chr8	91564701	91564769	protein_coding	Sall1	intron	ENSMUSG00000031665	NonProperStrand	129	2	-20.7820
chr17	29251343	29251364	antisense	Gm16194	.	ENSMUSG00000084956	NonProperStrand	20	chr5	132445118	132445149	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-9.4220
chr15	89163003	89163292	LTR	RLTR18-int	ERVK	chr15RLTR18-int89163082	ProperStrand	1	chr17	39847181	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr15	12856508	12856610	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	chr2	41344451	41344468	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-11.0408
chr14	122248997	122249087	LTR	MLT2B3	ERVL	chr14MLT2B3122248892	ProperStrand	1	chr9	59455771	59455871	SINE	B4	B4	chr9B459455624	NonProperStrand	1	1	-inf
chr11	89059813	89059849	LTR	MLT1F1	MaLR	chr11MLT1F189059746	ProperStrand	1	chr2	132696853	132696899	protein_coding	Lrrn4	intron	ENSMUSG00000043110	NonProperStrand	15	1	-inf
chr5	121825757	121835286	protein_coding-noncoding	Trafd1	utr3	ENSMUSG00000042726	ProperStrand	2	chr5	121825863	121835419	protein_coding	Trafd1	utr5	ENSMUSG00000042726	ProperStrand	17	2	-inf
chr11	55482756	55482830	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr5	29312870	29312955	LTR	MTD	MaLR	chr5MTD29312657	NonProperStrand	1	1	-inf
chr15	64209628	64209695	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr9	64016889	64016932	protein_coding	Zwilch	intron	ENSMUSG00000032400	ProperStrand	48	1	-9.0943
chr6	38506488	38506601	protein_coding-noncoding	Luc7l2	utr5	ENSMUSG00000029823	ProperStrand	6	chr17	50195524	50195542	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	12	1	-inf
chr13	58212540	58212567	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	chr2	77076606	77076643	protein_coding	Sestd1	intron	ENSMUSG00000042272	ProperStrand	17	1	-12.0427
chr16	43125070	43125142	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr16	33463941	33463970	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	1	-7.0542
chr10	82885814	82885900	LINE	L1Md_T	L1	chr10L1Md_T82884148	NonProperStrand	5	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-11.1021
chr14	26632971	26633071	LTR	MTA_Mm	MaLR	chr14MTA_Mm26632990	NonProperStrand	1	chr14	26632881	26632971	SINE	B2_Mm2	B2	chr14B2_Mm226632894	ProperStrand	1	1	-inf
chr15	41099296	41099313	LTR	RMER17B	ERVK	chr15RMER17B41098631	NonProperStrand	1	chr17	39846414	39846441	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	62832895	62832918	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr5	105565542	105565616	protein_coding	Gbp4	intron	ENSMUSG00000079363	NonProperStrand	11	1	-12.8120
chr3	116420533	116420633	LINE	L1_Rod	L1	chr3L1_Rod116420554	NonProperStrand	1	chr3	116420434	116420524	LTR	ORR1B1	MaLR	chr3ORR1B1116420203	ProperStrand	1	1	-inf
chr6	88854580	88854684	protein_coding	Tpra1	intron	ENSMUSG00000002871	NonProperStrand	2	chr16	48291301	48292930	protein_coding	Dppa4	intron	ENSMUSG00000058550	ProperStrand	20	1	-20.4416
chr10	67260423	67260493	LTR	MT2A	ERVL	chr10MT2A67260187	ProperStrand	1	chr10	67260492	67260574	LTR	MTD	MaLR	chr10MTD67260439	ProperStrand	1	1	-inf
chr17	39846596	39846664	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	53306768	53306846	Other	RMER1B	Other	chr18RMER1B53306635	NonProperStrand	1	1	-inf
chr2	29142295	29142383	SINE	ID_B1	B4	chr2ID_B129142193	ProperStrand	1	chr16	36080297	36080338	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	1	-inf
chr18	73590038	73590124	LINE	Lx9	L1	chr18Lx973589302	NonProperStrand	1	chr7	38196308	38196324	protein_coding	Zfp536	intron	ENSMUSG00000043456	ProperStrand	33	1	-inf
chr12	71236323	71236413	LTR	MTE-int	MaLR	chr12MTE-int71235298	ProperStrand	4	chr12	71236452	71236552	LTR	ORR1E	MaLR	chr12ORR1E71236405	ProperStrand	3	1	-inf
chr7	34210770	34210870	LINE	L1_Mus3	L1	chr7L1_Mus334210568	ProperStrand	2	chr7	34210927	34211017	LINE	L1_Mus3	L1	chr7L1_Mus334210921	NonProperStrand	2	1	-19.8939
chr17	39843817	39843834	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	ProperStrand	15	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.2385
chr16	9234484	9234629	LINE	L1_Mus1	L1	chr16L1_Mus19231335	NonProperStrand	3	chr1	164149180	164149197	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	1	-17.9119
chr17	93369531	93369621	LINE	L1Md_F2	L1	chr17L1Md_F293368751	ProperStrand	1	chr17	93369753	93369853	LINE	Lx3_Mus	L1	chr17Lx3_Mus93369672	NonProperStrand	1	1	-inf
chr8	22488459	22488526	LINE	L1_Mus1	L1	chr8L1_Mus122488312	NonProperStrand	1	chr2	5379265	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr4	117556112	117556168	Simple_repeat	(CCCG)n	Simple_repeat	chr4(CCCG)n117556088	ProperStrand	1	chr4	117555879	117555907	protein_coding	B4galt2	utr5	ENSMUSG00000028541	NonProperStrand	18	1	-inf
chr2	5379230	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr2	164440712	164440737	protein_coding	Wfdc6b	intron	ENSMUSG00000070531	NonProperStrand	21	1	-6.6136
chr8	64718017	64718048	LINE	L1M2	L1	chr8L1M264717445	NonProperStrand	1	chr8	64716656	64716688	Simple_repeat	(TTATA)n	Simple_repeat	chr8(TTATA)n64716651	NonProperStrand	1	1	-inf
chr12	40447087	40447206	LINE	L1MD3	L1	chr12L1MD340447005	ProperStrand	2	chr17	39847277	39847315	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr15	80078527	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr10	21997446	21997520	protein_coding	H60b	intron	ENSMUSG00000075297	ProperStrand	30	1	-9.4831
chr19	25959117	25959217	LTR	RLTR31A_Mm	ERVK	chr19RLTR31A_Mm25958988	ProperStrand	1	chr8	41446699	41446789	protein_coding	Efha2	intron	ENSMUSG00000039478	NonProperStrand	7	1	-inf
chr8	69739840	69739912	LINE	Lx2B	L1	chr8Lx2B69739539	NonProperStrand	4	chrX	77592044	77592125	LINE	Lx3B	L1	chrXLx3B77590187	ProperStrand	4	1	-inf
chr11	17946017	17946076	LINE	L1Md_T	L1	chr11L1Md_T17946018	ProperStrand	6	chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.7734
chr7	63891614	63891666	LINE	Lx5	L1	chr7Lx563891556	NonProperStrand	1	chr16	23115790	23115828	protein_coding	Rfc4	exon	ENSMUSG00000022881	ProperStrand	10	1	-inf
chr2	102829376	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr11	72445671	72445895	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	1	-8.7348
chr17	89801709	89801809	LINE	L1Md_F2	L1	chr17L1Md_F289800734	ProperStrand	1	chr17	89801942	89802032	SINE	B1_Mus2	Alu	chr17B1_Mus289801905	NonProperStrand	1	1	-inf
chr19	44303420	44303532	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	chr11	103846484	103846515	protein_coding	Arf2	utr3	ENSMUSG00000062421	NonProperStrand	5	1	-15.0069
chr16	20452101	20452186	LTR	RLTRETN_Mm	ERVK	chr16RLTRETN_Mm20452053	NonProperStrand	1	chr9	123461958	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	64358406	64358496	DNA	MER44D	MER2_type	chr11MER44D64358431	ProperStrand	1	chr11	64358193	64358293	DNA	Tigger7	MER2_type	chr11Tigger764358190	ProperStrand	1	1	-inf
chr13	56129565	56129655	LTR	RLTR21	ERVK	chr13RLTR2156129482	NonProperStrand	1	chr13	56129381	56129481	SINE	B1_Mus2	Alu	chr13B1_Mus256129344	ProperStrand	1	1	-inf
chrX	12801863	12801886	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr9	56223571	56223685	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	4	-inf
chr6	67302091	67302157	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr19	7029194	7029222	protein_coding	Plcb3	exon	ENSMUSG00000024960	ProperStrand	22	1	-11.5904
chr17	39846832	39846932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	130726931	130728809	LTR	MT2A	ERVL	chr3MT2A130728698	NonProperStrand	5	1	-3.1907
chr17	39846703	39846749	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	100157937	100160501	SINE	B1F2	Alu	chr15B1F2100160440	NonProperStrand	1	1	-inf
chr17	39848304	39848383	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	106786617	106786643	SINE	B4A	B4	chr11B4A106786426	NonProperStrand	3	1	-7.3534
chr2	59839023	59840969	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	chr2	91499149	91499227	protein_coding	Arhgap1	intron	ENSMUSG00000027247	ProperStrand	8	1	-14.2456
chr6	33357818	33357927	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr9	7988582	7988621	protein_coding	Yap1	intron	ENSMUSG00000053110	ProperStrand	74	1	-6.3980
chr4	131998243	131998309	LINE	L1_Mus1	L1	chr4L1_Mus1131998041	NonProperStrand	2	chr4	131998889	131998967	LTR	MurERV4-int	ERVK	chr4MurERV4-int131998502	NonProperStrand	2	1	-19.8939
chr17	39847158	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	103037308	103037325	protein_coding	Fbln5	intron	ENSMUSG00000021186	ProperStrand	8	1	-3.3803
chr16	22009599	22009659	protein_coding	Senp2	utr5	ENSMUSG00000022855	ProperStrand	61	chr17	65821557	65821607	protein_coding	Tmem232	intron	ENSMUSG00000045036	NonProperStrand	58	1	-12.0574
chrX	103963906	103963966	LINE	L1_Mur3	L1	chrXL1_Mur3103963670	NonProperStrand	15	chr12	87424831	87424906	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	78	1	-14.3166
chr17	39843588	39843624	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	122145997	122146118	protein_coding	Ano10	intron	ENSMUSG00000037949	NonProperStrand	24	1	-4.2456
chr17	39846389	39846432	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	100103482	100103535	SINE	B1_Mur4	Alu	chr14B1_Mur4100103465	NonProperStrand	3	1	-4.3017
chr1	89496461	89496533	LINE	L1M5	L1	chr1L1M589496186	ProperStrand	9	chr11	22930036	22930113	protein_coding	Fam161a	utr3	ENSMUSG00000049811	NonProperStrand	11	1	-19.5805
chr13	97190577	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr16	17261795	17261889	protein_coding	Hic2	utr3	ENSMUSG00000050240	ProperStrand	111	1	-3.9480
chr1	15142654	15142754	LTR	RLTR44A	ERVK	chr1RLTR44A15142506	ProperStrand	1	chr1	15142402	15142492	SINE	B2_Mm1t	B2	chr1B2_Mm1t15142332	NonProperStrand	1	1	-inf
chr17	39847222	39847351	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	154260120	154260136	SINE	B2_Mm2	B2	chr2B2_Mm2154260021	ProperStrand	3	1	-5.4882
chr9	114671395	114671489	protein_coding	Cmtm7	intron	ENSMUSG00000032436	ProperStrand	11	chr2	20574538	20574593	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-12.1074
chr2	177772509	177772575	LTR	ORR1A0-int	MaLR	chr2ORR1A0-int177771400	ProperStrand	3	chr17	39843589	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-8.6612
chr17	39847707	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	133467633	133467661	LTR	ORR1A1	MaLR	chr3ORR1A1133467398	NonProperStrand	2	1	-5.4040
chr17	39847727	39847759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	63339976	63340103	LTR	ORR1E	MaLR	chr17ORR1E63339968	ProperStrand	2	2	-inf
chr8	120754489	120755004	DNA	MER3	MER1_type	chr8MER3120754444	NonProperStrand	1	chr8	120753468	120753498	LTR	ORR1C1	MaLR	chr8ORR1C1120753444	NonProperStrand	9	1	-inf
chr8	105826775	105826878	LINE	L1ME2	L1	chr8L1ME2105826398	ProperStrand	1	chr8	105825066	105825115	LINE	L1_Mur2	L1	chr8L1_Mur2105824698	NonProperStrand	1	1	-inf
chr4	138311865	138311894	protein_coding	Pla2g2f	intron	ENSMUSG00000028749	NonProperStrand	14	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-12.0993
chr6	49255652	49255726	LTR	MMERGLN-int	ERV1	chr6MMERGLN-int49255515	NonProperStrand	5	chr2	73120304	73120350	protein_coding	Sp9	intron	ENSMUSG00000068859	NonProperStrand	9	1	-inf
chr16	25523267	25523347	LTR	RLTRETN_Mm	ERVK	chr16RLTRETN_Mm25523040	ProperStrand	3	chr17	39847687	39847721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr9	123461821	123461900	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	148688167	148688236	protein_coding	9230104L09Rik	intron	ENSMUSG00000027446	NonProperStrand	16	1	-3.4729
chr17	39848140	39848161	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	119410815	119410840	lincRNA	Gm11762	exon	ENSMUSG00000087675	ProperStrand	7	1	-5.4467
chr11	74670076	74670154	protein_coding-noncoding	Sgsm2	utr3	ENSMUSG00000038351	NonProperStrand	2	chr17	36231267	36231310	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	1	-20.7076
chr6	81939391	81939474	SINE	B4A	B4	chr6B4A81939264	ProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr17	87981428	87981551	LTR	RMER16-int	ERVK	chr17RMER16-int87981125	NonProperStrand	4	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-17.7711
chr17	39846405	39846433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	22945371	22945390	lincRNA	Gm16386	intron	ENSMUSG00000073442	NonProperStrand	2	1	-5.3533
chr16	75601863	75601897	protein_coding	Rbm11	utr3	ENSMUSG00000032940	ProperStrand	3	chr15	102440031	102440136	protein_coding	Atf7	intron	ENSMUSG00000052414	NonProperStrand	47	1	-18.8988
chrX	75862082	75862212	LINE	Lx9	L1	chrXLx975862021	ProperStrand	1	chr9	123462127	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	27498878	27500329	LINE	Lx2B	L1	chr14Lx2B27500000	NonProperStrand	2	chr14	27500344	27500434	LINE	Lx2B	L1	chr14Lx2B27500134	NonProperStrand	2	2	-inf
chr11	107432694	107432728	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	chr17	66068535	66068594	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	80	1	-9.0313
chr9	110281288	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr6	86869804	86869906	protein_coding	Aak1	intron	ENSMUSG00000057230	ProperStrand	54	1	-7.7734
chr13	6932147	6932163	LTR	RMER15	ERVL	chr13RMER156932102	NonProperStrand	1	chr9	123462145	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	154972232	154972290	LTR	RodERV21-int	ERV1	chr4RodERV21-int154972122	ProperStrand	7	chr6	49236485	49236553	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-13.7557
chr16	35981616	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr2	5379260	5634400	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	3	-6.7812
chr17	39847880	39847982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	170347888	170347904	LTR	ORR1B1	MaLR	chr2ORR1B1170347821	ProperStrand	1	1	-inf
chrX	38631958	38631996	LINE	L1Md_F2	L1	chrXL1Md_F238631495	ProperStrand	2	chrX	38630669	38630766	LINE	L2c	L2	chrXL2c38630670	ProperStrand	1	1	-inf
chr12	81497976	81498025	protein_coding	Dcaf5	intron	ENSMUSG00000049106	ProperStrand	69	chr12	91378431	91378481	protein_coding	Nrxn3	intron	ENSMUSG00000066392	NonProperStrand	182	1	-9.5161
chr6	3201469	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	53635997	53636061	protein_coding	Rab5a	intron	ENSMUSG00000017831	ProperStrand	19	1	-5.0638
chr14	12450758	12450775	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	30	chr2	121450019	121450799	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	1	-12.8715
chr9	37649386	37649476	LINE	L1_Mus2	L1	chr9L1_Mus237649084	ProperStrand	3	chr10	74988869	74988969	protein_coding	Snrpd3	intron	ENSMUSG00000020180	ProperStrand	17	1	-19.8425
chr6	3201472	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chrX	101682527	101684066	protein_coding	Uprt	intron	ENSMUSG00000073016	ProperStrand	28	2	-7.2251
chr3	133334053	133334118	LINE	Lx8	L1	chr3Lx8133333894	NonProperStrand	1	chr9	123461931	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	106126594	106126653	lincRNA	2810403D21Rik	intron	ENSMUSG00000086629	ProperStrand	17	chr8	70895758	70895817	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-13.1275
chrX	48434677	48434701	DNA	MER20	MER1_type	chrXMER2048434582	ProperStrand	1	chr11	103704522	103704540	protein_coding	Nsf	intron	ENSMUSG00000034187	ProperStrand	6	1	-inf
chr4	130530419	130530449	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n130530356	NonProperStrand	1	chr4	130531083	130531126	lincRNA	Gm12973	intron	ENSMUSG00000085804	NonProperStrand	45	1	-inf
chr12	14886204	14886222	LTR	MLT1K	MaLR	chr12MLT1K14886127	ProperStrand	2	chr17	39847043	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	109011658	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	4082172	4082482	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	3	-5.6342
chr18	35625810	35625827	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr18	50006316	50006403	protein_coding	Dmxl1	intron	ENSMUSG00000037416	ProperStrand	116	1	-7.1012
chr15	82947690	82947998	protein_coding-noncoding	Rrp7a	utr3	ENSMUSG00000018040	ProperStrand	12	chr15	82947587	82948111	protein_coding	Rrp7a	exon	ENSMUSG00000018040	ProperStrand	48	11	-20.3024
chr18	38122623	38122740	protein_coding	Fchsd1	intron	ENSMUSG00000038524	ProperStrand	1	chr6	119030954	119030973	protein_coding	Cacna1c	intron	ENSMUSG00000051331	ProperStrand	30	1	-inf
chr17	70787578	70787647	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr19	58378916	58378943	protein_coding	Gfra1	intron	ENSMUSG00000025089	ProperStrand	31	1	-9.7721
chr17	39846951	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	151939351	151939388	LTR	MLT2D	ERVL	chr4MLT2D151939267	ProperStrand	1	1	-inf
chr3	35835252	35835308	antisense	Gm15952	.	ENSMUSG00000085655	ProperStrand	7	chr16	35955635	35955717	protein_coding	Parp9	intron	ENSMUSG00000022906	ProperStrand	14	1	-19.2520
chr6	33332325	33332399	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr12	79475674	79475759	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	2	-3.6821
chr15	34238357	34258728	protein_coding	Matn2	intron	ENSMUSG00000022324	ProperStrand	45	chr6	34762318	34764960	protein_coding	Agbl3	intron	ENSMUSG00000038836	ProperStrand	8	1	-16.7742
chr13	59506325	59506391	LINE	Lx	L1	chr13Lx59505967	ProperStrand	3	chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr8	114554533	114554612	LINE	Lx3B	L1	chr8Lx3B114554354	ProperStrand	5	chrX	21680557	21680610	LINE	Lx9	L1	chrXLx921680470	ProperStrand	4	1	-inf
chr4	98458773	98458802	protein_coding	Kank4	intron	ENSMUSG00000035407	NonProperStrand	19	chr12	79696972	79697072	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-9.2311
chr17	39843503	39843593	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr13	23570990	23571090	protein_coding	Btn2a2	intron	ENSMUSG00000053216	ProperStrand	18	2	-8.0136
chr17	39846458	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	119229655	119229729	protein_coding	Oxsr1	intron	ENSMUSG00000036737	ProperStrand	5	1	-3.1907
chr17	39846927	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	35251532	35251587	protein_coding	Ly6g5b	exon	ENSMUSG00000043807	NonProperStrand	3	1	-4.3017
chr9	123461965	123461988	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	18948371	18948509	protein_coding	Xkr5	intron	ENSMUSG00000039814	ProperStrand	15	1	-3.5950
chr5	146261153	146261200	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	87845658	87845758	protein_coding-noncoding	Copg	utr5	ENSMUSG00000030058	NonProperStrand	26	1	-6.7134
chr17	39846430	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	112736690	112736790	SINE	B3	B2	chr12B3112736645	NonProperStrand	1	1	-inf
chr15	38018958	38019003	LINE	L1M5	L1	chr15L1M538018898	NonProperStrand	7	chr15	38014971	38015039	LTR	LTR16C	ERVL	chr15LTR16C38014953	ProperStrand	4	2	-inf
chr1	33769302	33769402	LTR	ORR1E-int	MaLR	chr1ORR1E-int33769251	ProperStrand	2	chr1	33769605	33769695	LTR	ORR1E	MaLR	chr1ORR1E33769586	ProperStrand	2	2	-inf
chr1	118954081	118954139	LINE	L1Md_F2	L1	chr1L1Md_F2118953913	NonProperStrand	2	chr1	118954328	118954368	SINE	B3	B2	chr1B3118954239	ProperStrand	1	1	-inf
chr2	50316298	50316388	LINE	L1Md_A	L1	chr2L1Md_A50316097	NonProperStrand	1	chr2	50316612	50316712	SINE	MIRb	MIR	chr2MIRb50316591	ProperStrand	1	1	-inf
chr17	33823212	33823302	protein_coding	Hnrnpm	utr5	ENSMUSG00000059208	NonProperStrand	92	chr17	33823312	33824467	protein_coding	March2	utr3	ENSMUSG00000079557	NonProperStrand	33	1	-12.3713
chr17	31837380	31837468	SINE	B4A	B4	chr17B4A31837223	ProperStrand	2	chr4	83329316	83329372	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	2	-inf
chr18	80095404	80095494	Low_complexity	GA-rich	Low_complexity	chr18GA-rich80094909	ProperStrand	8	chr7	4698451	4698551	protein_coding	Suv420h2	utr3	ENSMUSG00000059851	NonProperStrand	1	1	-inf
chr10	96801806	96801896	LTR	MLT1B	MaLR	chr10MLT1B96801745	NonProperStrand	2	chr10	96801629	96801729	LTR	MT2B	ERVL	chr10MT2B96801576	ProperStrand	2	2	-inf
chr2	173776680	173776780	Simple_repeat	(CATATA)n	Simple_repeat	chr2(CATATA)n173776619	ProperStrand	2	chr2	173776509	173776599	Simple_repeat	(TCTA)n	Simple_repeat	chr2(TCTA)n173776482	ProperStrand	2	2	-inf
chr17	39846394	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	37720007	37720026	protein_coding	Evc	intron	ENSMUSG00000029122	ProperStrand	2	1	-5.3533
chr18	46532030	46532130	LINE	Lx7	L1	chr18Lx746531869	ProperStrand	1	chr18	46531671	46531760	Simple_repeat	(CA)n	Simple_repeat	chr18(CA)n46531684	ProperStrand	1	1	-inf
chr7	79161027	79161127	LINE	L1Md_F2	L1	chr7L1Md_F279160699	NonProperStrand	1	chr7	79161320	79161410	LTR	ORR1E	MaLR	chr7ORR1E79161295	NonProperStrand	1	1	-inf
chr17	88482212	88482292	SINE	B3	B2	chr17B388482109	NonProperStrand	1	chr17	88481900	88481953	SINE	PB1D10	Alu	chr17PB1D1088481889	NonProperStrand	1	1	-inf
chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	chr9	119102642	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	10	1	-12.2892
chr9	123461954	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr19	4734397	4734453	protein_coding	Spnb3	exon	ENSMUSG00000067889	ProperStrand	17	1	-3.3592
chr9	70554657	70554718	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	chr6	51922317	51922333	protein_coding	Skap2	intron	ENSMUSG00000059182	NonProperStrand	7	1	-15.6631
chr3	101591128	101591144	LTR	RMER17A2	ERVK	chr3RMER17A2101590854	NonProperStrand	2	chr3	101590617	101590689	LTR	RMER5	ERV1	chr3RMER5101590429	NonProperStrand	7	1	-21.1088
chr17	56375603	56375706	Low_complexity	polypurine	Low_complexity	chr17polypurine56375632	ProperStrand	1	chr17	56375564	56375604	SINE	B1_Mus2	Alu	chr17B1_Mus256375489	ProperStrand	1	1	-inf
chr18	49933223	49933323	LTR	RMER19B	ERVK	chr18RMER19B49933033	NonProperStrand	1	chr18	49933400	49933490	LTR	RMER19B	ERVK	chr18RMER19B49933328	NonProperStrand	1	1	-inf
chr1	161036074	161036138	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr13	44869602	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.1358
chr17	39846461	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr1	93420466	93420485	protein_coding	Traf3ip1	intron	ENSMUSG00000034292	NonProperStrand	54	1	-13.3243
chr5	30048834	30048934	SINE	B1_Mus2	Alu	chr5B1_Mus230048832	ProperStrand	1	chr2	5288042	5288131	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr11	46108588	46108626	protein_coding	Cyfip2	intron	ENSMUSG00000020340	NonProperStrand	77	chr11	44542311	44542339	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	1	-10.0473
chr17	39847276	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	31080439	31080474	SINE	B4A	B4	chr2B4A31080312	NonProperStrand	1	1	-inf
chr8	111808784	111808831	LINE	L1MEd	L1	chr8L1MEd111808545	ProperStrand	1	chr12	78350927	78351003	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr1	71597670	71597763	LINE	L2a	L2	chr1L2a71597569	NonProperStrand	4	chr1	71593139	71593163	LTR	MERVL_2A-int	ERVL	chr1MERVL_2A-int71592426	NonProperStrand	13	1	-inf
chr11	12405125	12405182	SINE	PB1D9	Alu	chr11PB1D912405096	NonProperStrand	1	chr11	120286729	120286937	protein_coding	Nploc4	intron	ENSMUSG00000039703	NonProperStrand	167	1	-inf
chr17	39847474	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	52215924	52215940	antisense	Gm15053	.	ENSMUSG00000055408	ProperStrand	1	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr2	37550380	37550511	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	1	-9.6764
chr3	101576403	101576527	LINE	L1_Mm	L1	chr3L1_Mm101576437	ProperStrand	1	chr19	46337109	46337136	protein_coding	Gbf1	intron	ENSMUSG00000025224	NonProperStrand	28	1	-inf
chr10	47951890	47951990	LINE	L1Md_T	L1	chr10L1Md_T47951504	ProperStrand	1	chr10	46008270	46008360	SINE	RSINE1	B4	chr10RSINE146008194	ProperStrand	1	1	-inf
chr7	12966317	12966350	LINE	L1Md_T	L1	chr7L1Md_T12964894	ProperStrand	3	chr17	39848155	39848198	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	2	-12.6629
chr11	3249971	3250035	protein_coding	Limk2	intron	ENSMUSG00000020451	ProperStrand	23	chr13	97190557	97190609	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr10	39969456	39969481	protein_coding	Gtf3c6	exon	ENSMUSG00000019837	ProperStrand	1	chr16	36751881	36751897	protein_coding	Slc15a2	exon	ENSMUSG00000022899	NonProperStrand	15	1	-inf
chr9	40199940	40200040	protein_coding-noncoding	Gramd1b	utr3	ENSMUSG00000040111	ProperStrand	1	chr9	40200152	40200242	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-inf
chr15	74934267	74934357	LINE	L1Md_F	L1	chr15L1Md_F74930031	ProperStrand	1	chr17	35000517	35000617	protein_coding	C2	intron	ENSMUSG00000024371	ProperStrand	17	1	-inf
chr13	96927299	96927385	LINE	L1VL4	L1	chr13L1VL496926218	ProperStrand	1	chr13	96931455	96931509	LTR	MTD	MaLR	chr13MTD96931374	NonProperStrand	1	1	-inf
chr2	122364235	122364285	LINE	L1Md_F3	L1	chr2L1Md_F3122361717	ProperStrand	8	chr5	137954740	137954779	protein_coding	Epo	intron	ENSMUSG00000029711	ProperStrand	3	1	-inf
chr18	29061774	29061874	LINE	Lx3_Mus	L1	chr18Lx3_Mus29061324	ProperStrand	1	chr18	29062096	29062186	LINE	Lx3_Mus	L1	chr18Lx3_Mus29061955	NonProperStrand	1	1	-inf
chr14	122201232	122201289	LINE	L1MB7	L1	chr14L1MB7122200956	ProperStrand	1	chr5	110739505	110739572	protein_coding	Pole	intron	ENSMUSG00000007080	NonProperStrand	46	1	-inf
chr7	130990395	130990495	LTR	MLT1A	MaLR	chr7MLT1A130990179	ProperStrand	1	chr7	130990003	130990093	LTR	MLT1E2	MaLR	chr7MLT1E2130989645	ProperStrand	1	1	-inf
chr11	26158990	26159045	LINE	L1_Mur2	L1	chr11L1_Mur226158093	ProperStrand	1	chr5	121205006	121205071	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-inf
chr8	79151390	79151455	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	chr17	35834907	35834949	protein_coding	Ddr1	utr5	ENSMUSG00000003534	ProperStrand	232	1	-7.8292
chr11	6025212	6025262	protein_coding-noncoding	Nudcd3	utr3	ENSMUSG00000053838	ProperStrand	1	chr5	121722693	121722777	protein_coding	Gm15800	intron	ENSMUSG00000042744	ProperStrand	172	1	-inf
chr6	5010892	5010990	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	chr6	113556303	113556341	protein_coding	6720456B07Rik	intron	ENSMUSG00000033940	ProperStrand	11	1	-12.5639
chr17	35845081	35845170	antisense	Gm4577	.	ENSMUSG00000086867	ProperStrand	10	chr11	68815936	68815973	protein_coding	Pfas	intron	ENSMUSG00000020899	NonProperStrand	23	1	-17.6114
chr19	5800613	5800751	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	118970519	118970546	protein_coding	Vill	intron	ENSMUSG00000038775	ProperStrand	1	1	-inf
chr1	105265926	105266026	LINE	L1MEe	L1	chr1L1MEe105265853	ProperStrand	1	chr1	105266060	105266150	SINE	B4	B4	chr1B4105266080	ProperStrand	1	1	-inf
chr14	121348439	121348539	SINE	B3	B2	chr14B3121348353	ProperStrand	3	chr14	121348564	121348654	SINE	RSINE1	B4	chr14RSINE1121348554	ProperStrand	3	3	-inf
chr17	39847366	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	119480557	119480573	protein_coding	Atmin	exon	ENSMUSG00000047388	NonProperStrand	1	1	-inf
chr10	75008843	75008943	LINE	L1Md_F2	L1	chr10L1Md_F275008860	NonProperStrand	3	chr10	75008646	75008736	LINE	Lx7	L1	chr10Lx775008275	ProperStrand	3	3	-inf
chr2	107376425	107376525	LINE	L1Md_F2	L1	chr2L1Md_F2107375828	NonProperStrand	1	chr2	155390517	155390607	protein_coding	Acss2	intron	ENSMUSG00000027605	ProperStrand	10	1	-inf
chr2	110293736	110293826	LINE	L1MC1	L1	chr2L1MC1110293584	NonProperStrand	1	chr2	110293951	110294051	SINE	B3A	B2	chr2B3A110293865	NonProperStrand	1	1	-inf
chr8	93152944	93153034	LINE	L1M2	L1	chr8L1M293152788	ProperStrand	1	chr8	93153367	93153467	LINE	Lx8	L1	chr8Lx893153359	ProperStrand	1	1	-inf
chr17	39842997	39843048	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	36231531	36231572	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	1	-6.6909
chr18	34257940	34258038	LTR	MTB_Mm	MaLR	chr18MTB_Mm34257893	NonProperStrand	1	chr18	34252560	34252586	LTR	RMER10A	ERVL	chr18RMER10A34252425	NonProperStrand	2	1	-inf
chr5	108477386	108477411	Simple_repeat	(TC)n	Simple_repeat	chr5(TC)n108477334	ProperStrand	1	chr6	90968976	90969026	protein_coding	Nup210	intron	ENSMUSG00000030091	ProperStrand	121	1	-inf
chr5	88591947	88592028	LTR	MMETn-int	ERVK	chr5MMETn-int88591800	NonProperStrand	15	chr5	88588097	88588169	LTR	RMER17A2	ERVK	chr5RMER17A288587545	ProperStrand	3	1	-inf
chr11	51606510	51606530	SINE	B1_Mus1	Alu	chr11B1_Mus151606460	ProperStrand	13	chr6	128375198	128375288	SINE	B3	B2	chr6B3128375197	ProperStrand	3	1	-22.9476
chrX	42841428	42841518	LINE	L1Md_F	L1	chrXL1Md_F42841356	NonProperStrand	1	chrX	42841779	42841879	LINE	L1VL4	L1	chrXL1VL442841555	ProperStrand	1	1	-inf
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr6	143078173	143078315	LTR	RMER21A	ERV1	chr6RMER21A143078050	NonProperStrand	13	1	-17.4352
chr10	93307895	93307938	protein_coding	Usp44	intron	ENSMUSG00000020020	NonProperStrand	11	chr14	11829688	11829741	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	6	-inf
chr17	39847471	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	23544507	23544612	SINE	ID_B1	B4	chr13ID_B123544530	NonProperStrand	2	2	-inf
chr11	105846910	105847006	protein_coding	Ace	exon	ENSMUSG00000020681	ProperStrand	3	chr9	123461884	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr13	9834327	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr9	110281286	110281339	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-4.7119
chr5	122891089	122891179	protein_coding	Anapc7	intron	ENSMUSG00000029466	NonProperStrand	20	chr14	11843971	11844071	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-10.0927
chr8	106669292	106669337	LINE	L1M4	L1	chr8L1M4106669087	NonProperStrand	5	chr4	106927115	106927229	protein_coding	Hspb11	intron	ENSMUSG00000063172	ProperStrand	93	1	-16.3282
chr10	103121383	103121418	LINE	L1Md_T	L1	chr10L1Md_T103119463	ProperStrand	2	chr2	129178369	129178386	LINE	L1Md_F2	L1	chr2L1Md_F2129176157	NonProperStrand	5	1	-inf
chr6	39400957	39401021	SINE	B1_Mus2	Alu	chr6B1_Mus239400904	NonProperStrand	1	chr9	123461874	123461906	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	39890635	39890681	LTR	ORR1B2	MaLR	chr10ORR1B239890549	NonProperStrand	1	chr9	114524509	114524565	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-inf
chr13	46925755	46925845	protein_coding	Kif13a	intron	ENSMUSG00000021375	ProperStrand	101	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-8.9010
chr4	53473576	53473642	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	chr10	69717977	69718044	protein_coding	Slc16a9	intron	ENSMUSG00000037762	ProperStrand	5	1	-16.4380
chrX	151058196	151058275	LINE	Lx5	L1	chrXLx5151058144	ProperStrand	3	chrX	151061647	151061716	LTR	IAPEY3-int	ERVK	chrXIAPEY3-int151061637	ProperStrand	3	3	-inf
chr17	39847161	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	36691600	36693318	protein_coding	Fam178b	intron	ENSMUSG00000046337	NonProperStrand	23	3	-4.6074
chr13	97190574	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr9	58339721	58339814	protein_coding	6030419C18Rik	intron	ENSMUSG00000066607	ProperStrand	4	1	-10.7386
chr17	87990444	87990460	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int87990155	ProperStrand	5	chr17	39843527	39843571	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-7.4674
chr12	51896921	51896956	LINE	L1VL4	L1	chr12L1VL451896849	NonProperStrand	1	chr7	26439898	26439927	protein_coding	Bckdha	intron	ENSMUSG00000060376	NonProperStrand	17	1	-inf
chr6	3201505	3201559	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	107012885	107012941	SINE	B1_Mm	Alu	chr11B1_Mm107012792	NonProperStrand	7	1	-7.1107
chr12	19943966	19944066	LTR	MT2_Mm	ERVL	chr12MT2_Mm19943535	ProperStrand	1	chr12	19944118	19944208	SINE	B1_Mus1	Alu	chr12B1_Mus119944047	ProperStrand	1	1	-inf
chr13	23555142	23555228	protein_coding	Btn1a1	intron	ENSMUSG00000000706	NonProperStrand	212	chr13	23551197	23551244	protein_coding	Btn1a1	intron	ENSMUSG00000000706	ProperStrand	29	1	-10.9600
chr9	32054986	32055024	protein_coding-noncoding	Arhgap32	utr5	ENSMUSG00000041444	ProperStrand	7	chr9	32048529	32048615	protein_coding	Arhgap32	intron	ENSMUSG00000041444	ProperStrand	30	1	-17.7902
chr13	98859779	98859821	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr2	29667261	29667359	protein_coding	Slc27a4	intron	ENSMUSG00000059316	ProperStrand	43	1	-10.9932
chr9	17987812	17987833	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr10	63858855	63858872	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-8.8641
chr9	123461884	123461987	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	48176046	48176071	protein_coding	Stx17	intron	ENSMUSG00000061455	ProperStrand	7	1	-5.1121
chr17	39846931	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	61168330	61174878	protein_coding	Slc47a1	intron	ENSMUSG00000010122	ProperStrand	20	4	-4.6084
chr12	36154728	36154755	LINE	L1MA6	L1	chr12L1MA636154481	NonProperStrand	2	chr19	5798118	5798192	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-11.8135
chr18	32742820	32742836	LTR	RMER16-int	ERVK	chr18RMER16-int32742680	ProperStrand	1	chr4	33318583	33318700	protein_coding	Srsf12	utr3	ENSMUSG00000054679	ProperStrand	10	1	-inf
chr13	93467755	93467848	protein_coding	Serinc5	intron	ENSMUSG00000021703	NonProperStrand	22	chr9	72302146	72302209	protein_coding	Mns1	intron	ENSMUSG00000032221	ProperStrand	8	1	-18.3441
chr2	42864396	42864496	LINE	Lx7	L1	chr2Lx742864189	ProperStrand	1	chr2	42864497	42864587	LINE	Lx8	L1	chr2Lx842864523	NonProperStrand	1	1	-inf
chr5	110419891	110419931	DNA	Tigger7	MER2_type	chr5Tigger7110419856	ProperStrand	1	chr1	180810247	180811825	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	62	1	-inf
chr13	67661342	67661442	lincRNA	9430065F17Rik	intron	ENSMUSG00000086977	NonProperStrand	1	chr9	65689531	65689621	protein_coding	Trip4	intron	ENSMUSG00000032386	NonProperStrand	24	1	-inf
chr7	141620520	141620557	LINE	L1M5	L1	chr7L1M5141620234	ProperStrand	1	chr6	49236483	49236588	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-inf
chrX	37148556	37148646	LINE	Lx	L1	chrXLx37148518	ProperStrand	5	chrX	37148099	37148199	LTR	IAPLTR2b	ERVK	chrXIAPLTR2b37147876	ProperStrand	6	5	-inf
chr2	175481108	175481191	LINE	L1Md_F3	L1	chr2L1Md_F3175478300	NonProperStrand	3	chr2	175483264	175483283	LINE	L1_Mus1	L1	chr2L1_Mus1175482634	NonProperStrand	15	1	-21.4444
chr1	36073002	36073066	LINE	L1MEg	L1	chr1L1MEg36073009	NonProperStrand	1	chr17	39847709	39847762	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	35834940	35835052	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.3924
chr17	39848182	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	142376632	142376736	SINE	MIRc	MIR	chr7MIRc142376609	ProperStrand	1	1	-inf
chr3	27241593	27241693	LTR	MTEb	MaLR	chr3MTEb27241591	NonProperStrand	1	chr3	27241185	27241275	protein_coding	Tnfsf10	utr3	ENSMUSG00000039304	ProperStrand	14	1	-inf
chr7	34141019	34141080	LTR	IAPLTR3-int	ERVK	chr7IAPLTR3-int34140128	NonProperStrand	1	chr9	19658035	19658109	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr1	43454920	43455010	LTR	MLT1C	MaLR	chr1MLT1C43454939	NonProperStrand	2	chr1	43455019	43455119	SINE	B1_Mur1	Alu	chr1B1_Mur143455027	ProperStrand	2	2	-inf
chr4	118223737	118223789	SINE	B3A	B2	chr4B3A118223743	NonProperStrand	1	chr3	36080785	36080876	protein_coding	Qrfpr	intron	ENSMUSG00000058400	NonProperStrand	16	1	-inf
chr17	4082172	4082226	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	12	1	-10.9337
chr13	51111860	51111956	LTR	MTE2a	MaLR	chr13MTE2a51111825	ProperStrand	1	chr13	51109218	51109276	Simple_repeat	(GAGAA)n	Simple_repeat	chr13(GAGAA)n51109199	ProperStrand	1	1	-inf
chr9	7459442	7459532	LINE	Lx7	L1	chr9Lx77459445	NonProperStrand	1	chr9	7459066	7459166	SINE	ID_B1	B4	chr9ID_B17459065	ProperStrand	1	1	-inf
chr18	49985540	49985595	SINE	B1_Mm	Alu	chr18B1_Mm49985538	NonProperStrand	1	chr13	43477424	43477459	protein_coding	Sirt5	intron	ENSMUSG00000054021	NonProperStrand	9	1	-inf
chr3	41637589	41637617	LTR	MMERVK10C-int	ERVK	chr3MMERVK10C-int41637592	ProperStrand	1	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr13	49587659	49587749	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	chr9	115202609	115202709	protein_coding	Stt3b	intron	ENSMUSG00000032437	NonProperStrand	44	2	-20.2384
chr1	164437554	164437630	DNA	URR1A	MER1_type	chr1URR1A164437555	NonProperStrand	1	chr1	164437493	164437555	SINE	B2_Mm2	B2	chr1B2_Mm2164437369	NonProperStrand	2	1	-inf
chr4	138177029	138180575	protein_coding	Vwa5b1	intron	ENSMUSG00000028753	NonProperStrand	18	chr11	23296039	23296059	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-12.5879
chr17	40492168	40492271	LINE	L1_Mus2	L1	chr17L1_Mus240487434	ProperStrand	1	chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	65438890	65438909	LINE	Lx4A	L1	chr12Lx4A65438875	NonProperStrand	1	chr2	5379252	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	39843407	39843488	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	79975047	79975065	protein_coding	Arhgap10	intron	ENSMUSG00000037148	ProperStrand	12	1	-5.6158
chr17	39846889	39846921	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	72843376	72843403	LTR	ORR1E	MaLR	chr1ORR1E72843222	NonProperStrand	1	1	-inf
chr17	39846917	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	67622424	67622445	protein_coding	BC030870	intron	ENSMUSG00000074300	NonProperStrand	2	1	-5.3533
chr4	55381039	55381056	protein_coding-noncoding	Rad23b	utr5	ENSMUSG00000028426	ProperStrand	5	chr14	14704549	14704616	protein_coding	Gm281	intron	ENSMUSG00000084902	NonProperStrand	42	1	-18.0379
chr3	91196183	91196273	LTR	ORR1A4-int	MaLR	chr3ORR1A4-int91196064	NonProperStrand	1	chr3	91195968	91196068	LTR	ORR1A4	MaLR	chr3ORR1A491195723	NonProperStrand	1	1	-inf
chr8	44490140	44490230	SINE	B1F	Alu	chr8B1F44490129	ProperStrand	1	chr8	44490021	44490121	SINE	B1_Mm	Alu	chr8B1_Mm44490027	ProperStrand	1	1	-inf
chr17	39846462	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	56715915	56715997	LTR	ORR1B1	MaLR	chr6ORR1B156715639	NonProperStrand	1	1	-inf
chr7	126557748	126557821	LTR	IAPEz-int	ERVK	chr7IAPEz-int126556580	ProperStrand	9	chr19	47862840	47862884	protein_coding	Wdr96	exon	ENSMUSG00000044948	NonProperStrand	8	1	-20.4209
chr5	77017422	77018773	protein_coding	Cep135	intron	ENSMUSG00000036403	NonProperStrand	8	chr13	44869576	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.5479
chr11	74982430	74982530	protein_coding	Hic1	intron	ENSMUSG00000043099	NonProperStrand	3	chr4	88920400	88920490	protein_coding	Cdkn2a	utr3	ENSMUSG00000044303	ProperStrand	9	2	-22.4834
chr12	88360650	88360740	LTR	ORR1D1	MaLR	chr12ORR1D188360390	NonProperStrand	5	chr12	88360772	88368423	protein_coding	Tmem63c	intron	ENSMUSG00000034145	ProperStrand	23	4	-22.1379
chr2	25246565	25246611	SINE	B1_Mm	Alu	chr2B1_Mm25246481	NonProperStrand	3	chr17	39843657	39843708	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-8.6612
chr12	91663028	91663103	SINE	B4A	B4	chr12B4A91662837	ProperStrand	1	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr2	86995180	86995280	LINE	Lx9	L1	chr2Lx986995106	NonProperStrand	1	chr2	86995528	86995618	LINE	Lx9	L1	chr2Lx986995386	NonProperStrand	1	1	-inf
chr11	51601398	51601447	protein_coding	Sar1b	intron	ENSMUSG00000020386	NonProperStrand	109	chr4	59717533	59717592	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	ProperStrand	123	1	-9.3831
chr6	14145543	14145613	LTR	ORR1C1	MaLR	chr6ORR1C114145533	NonProperStrand	1	chr9	21496883	21496962	protein_coding	Smarca4	intron	ENSMUSG00000032187	ProperStrand	82	1	-inf
chr7	29465806	29465896	Low_complexity	CT-rich	Low_complexity	chr7CT-rich29465789	NonProperStrand	6	chr7	29465679	29465779	SINE	B1_Mur2	Alu	chr7B1_Mur229465679	ProperStrand	6	6	-inf
chr7	79288415	79288514	protein_coding	Mctp2	intron	ENSMUSG00000032776	NonProperStrand	86	chr11	22845310	22845352	protein_coding	Commd1	intron	ENSMUSG00000051355	ProperStrand	127	1	-9.7938
chr17	39847165	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	86255402	86255460	Low_complexity	GA-rich	Low_complexity	chr11GA-rich86255387	NonProperStrand	1	1	-inf
chr14	40947864	40947920	LINE	L1Md_F2	L1	chr14L1Md_F240946932	NonProperStrand	3	chr17	39847248	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr17	4082636	4082745	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr1	122357170	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	1	-7.7530
chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	152249876	152249913	SINE	B3	B2	chr4B3152249772	ProperStrand	1	1	-inf
chr9	118674951	118675012	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr3	108554337	108554360	protein_coding	Aknad1	intron	ENSMUSG00000049565	NonProperStrand	220	1	-3.4892
chr17	39847611	39847675	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	28908307	28908381	protein_coding	Mapk13	intron	ENSMUSG00000004864	NonProperStrand	2	1	-5.4040
chr9	123461935	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	44913357	44914664	protein_coding	Amica1	intron	ENSMUSG00000048534	NonProperStrand	6	1	-5.4370
chr17	39846352	39846684	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	42933563	42967992	protein_coding	Pou2f3	intron	ENSMUSG00000032015	NonProperStrand	2	2	-inf
chr3	134319714	134319814	LINE	Lx9	L1	chr3Lx9134319667	ProperStrand	1	chr3	134319949	134320039	LINE	Lx9	L1	chr3Lx9134319969	ProperStrand	1	1	-inf
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr9	78479187	78479342	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-5.4658
chr1	33482024	33482144	LINE	L1Md_F2	L1	chr1L1Md_F233481362	NonProperStrand	1	chr17	39847659	39847692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr7	116284717	116284748	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	1	-7.7503
chr15	78525181	78525363	protein_coding	Elfn2	intron	ENSMUSG00000043460	NonProperStrand	4	chr8	70860105	70860135	protein_coding	Sh2d4a	intron	ENSMUSG00000053886	NonProperStrand	62	1	-17.8110
chr17	35162570	35162640	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	151	chr3	132662021	132662081	protein_coding	Gstcd	intron	ENSMUSG00000028018	ProperStrand	18	1	-12.6150
chr17	39842998	39843068	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr11	88864097	88864158	protein_coding	Trim25	intron	ENSMUSG00000000275	NonProperStrand	36	2	-10.3698
chr4	43492784	43492809	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr14	11604151	11604267	antisense	Gm16542	.	ENSMUSG00000089833	ProperStrand	103	1	-6.0249
chr16	98063635	98063685	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	chr17	30452963	30453023	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-10.1885
chr2	30113324	30113377	protein_coding	Lrrc8a	intron	ENSMUSG00000007476	NonProperStrand	15	chr6	38077892	38077985	protein_coding	D630045J12Rik	utr3	ENSMUSG00000063455	ProperStrand	34	1	-16.0003
chr2	53069542	53069588	protein_coding	Arl6ip6	intron	ENSMUSG00000026960	ProperStrand	14	chr17	66354940	66355041	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	1	-12.3079
chr9	123461876	123462081	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	154871457	154871677	protein_coding	a	intron	ENSMUSG00000027596	NonProperStrand	26	2	-4.5840
chr1	4809361	4809461	protein_coding	Lypla1	intron	ENSMUSG00000025903	NonProperStrand	3	chr7	99475990	99476080	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-15.9546
chr16	6958311	6958332	protein_coding	Rbfox1	intron	ENSMUSG00000008658	NonProperStrand	9	chr4	137603160	137603219	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-11.8166
chr9	47828007	47828107	LTR	MTE2a	MaLR	chr9MTE2a47827734	ProperStrand	2	chr9	47827523	47827613	LTR	ORR1B2	MaLR	chr9ORR1B247827367	NonProperStrand	1	1	-inf
chr11	71091200	71091290	polymorphic_pseudogene	Nlrp1c-ps	.	ENSMUSG00000092528	NonProperStrand	5	chr17	22197731	22197831	protein_coding	Zfp943	intron	ENSMUSG00000053347	NonProperStrand	10	1	-22.6756
chr9	114489760	114489780	SINE	B2_Mm1a	B2	chr9B2_Mm1a114489717	NonProperStrand	2	chr2	18011615	18011748	protein_coding	Mllt10	intron	ENSMUSG00000026743	ProperStrand	47	2	-inf
chr5	115490297	115490397	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr11	86513346	86513592	protein_coding	Cltc	intron	ENSMUSG00000047126	ProperStrand	35	4	-inf
chr12	24871794	24871828	DNA	URR1B	MER1_type	chr12URR1B24871649	ProperStrand	1	chr17	39847659	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	117036063	117036103	LINE	L1Md_T	L1	chr14L1Md_T117034368	NonProperStrand	3	chr4	56874606	56874656	protein_coding	Ctnnal1	intron	ENSMUSG00000038816	ProperStrand	58	1	-18.5796
chr18	12737378	12737397	protein_coding	Lama3	intron	ENSMUSG00000024421	NonProperStrand	15	chr8	48115097	48115222	protein_coding	Enpp6	intron	ENSMUSG00000038173	ProperStrand	45	1	-15.4217
chr2	67093485	67093504	LINE	Lx3_Mus	L1	chr2Lx3_Mus67092898	ProperStrand	1	chr17	39846949	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847552	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	45934675	45934691	LTR	ORR1E	MaLR	chr8ORR1E45934591	NonProperStrand	1	1	-inf
chr17	4082245	4082265	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr9	114513723	114513820	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-3.7669
chr16	33483984	33484005	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	chr11	48803963	48804181	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	2	-12.2812
chr3	90401860	90401960	LINE	L2a	L2	chr3L2a90401821	NonProperStrand	1	chr3	90402407	90403148	SINE	B3A	B2	chr3B3A90402940	NonProperStrand	1	1	-inf
chr10	62887287	62887328	SINE	B2_Mm2	B2	chr10B2_Mm262887282	NonProperStrand	3	chr15	77102095	77102113	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	1	-16.6310
chr15	14200477	14200567	LTR	MTE-int	MaLR	chr15MTE-int14200419	NonProperStrand	1	chr1	79607177	79607277	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	10	1	-inf
chr19	6910659	6910760	protein_coding	Rps6ka4	intron	ENSMUSG00000024952	NonProperStrand	6	chr9	123461884	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr7	37993140	37993230	LINE	L1MA5	L1	chr7L1MA537993150	ProperStrand	2	chr7	37993001	37993101	LTR	ORR1D2	MaLR	chr7ORR1D237992890	NonProperStrand	2	2	-inf
chr13	62593980	62594070	SINE	B1_Mus2	Alu	chr13B1_Mus262593965	NonProperStrand	2	chr13	62593868	62593968	Unknown	MurSatRep1	Unknown	chr13MurSatRep162593717	ProperStrand	2	2	-inf
chr11	109011650	109011704	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	104122908	104122979	LTR	MLT1H2	MaLR	chr3MLT1H2104122760	NonProperStrand	4	1	-11.7441
chr7	34925612	34925673	SINE	B4	B4	chr7B434925401	NonProperStrand	2	chr7	34926728	34926764	protein_coding	Uba2	intron	ENSMUSG00000052997	NonProperStrand	14	2	-inf
chr19	36349621	36349711	LINE	Lx7	L1	chr19Lx736349417	ProperStrand	3	chr19	36349751	36349851	Simple_repeat	(TC)n	Simple_repeat	chr19(TC)n36349776	ProperStrand	3	3	-inf
chr6	112659619	112659651	LTR	IAPEz-int	ERVK	chr6IAPEz-int112655193	ProperStrand	2	mmu-miR-3968	1	20	miRNA	mmu-miR-3968	.	mmu-miR-3968	ProperStrand	12	1	-inf
chr17	39848598	39848631	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	112825496	112825594	protein_coding	Dnhd1	intron	ENSMUSG00000030882	NonProperStrand	3	1	-7.6307
chr9	6973337	6973401	protein_coding	Dync2h1	intron	ENSMUSG00000047193	ProperStrand	23	chr10	85888508	85888589	protein_coding	Syn3	intron	ENSMUSG00000059602	NonProperStrand	48	1	-14.4125
chr7	19524050	19524068	protein_coding	Nova2	intron	ENSMUSG00000030411	NonProperStrand	37	chr6	93815824	93912897	protein_coding	Magi1	intron	ENSMUSG00000045095	NonProperStrand	20	1	-15.2395
chr10	30811148	30811215	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr16	20680989	20681184	protein_coding	Eif4g1	exon	ENSMUSG00000045983	ProperStrand	123	1	-13.7008
chrX	142028329	142028429	LINE	L1MA6	L1	chrXL1MA6142028317	ProperStrand	1	chrX	142028432	142028522	LTR	ORR1B1	MaLR	chrXORR1B1142028414	NonProperStrand	1	1	-inf
chr1	170485281	170485367	LTR	MTD-int	MaLR	chr1MTD-int170484841	ProperStrand	1	chr1	38517787	38517863	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	1	-inf
chr1	7532383	7532483	LINE	L1Md_F2	L1	chr1L1Md_F27531518	NonProperStrand	1	chr1	7532730	7532820	LTR	RLTR17	ERVK	chr1RLTR177532673	ProperStrand	1	1	-inf
chr16	89973387	89973528	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr15	12180655	12180672	protein_coding	Mtmr12	intron	ENSMUSG00000039458	NonProperStrand	9	1	-10.1746
chr13	37471325	37471372	protein_coding	Ly86	intron	ENSMUSG00000021423	NonProperStrand	1	chr9	123462081	123462138	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	8144987	8145028	LINE	L1Md_F2	L1	chrXL1Md_F28144136	ProperStrand	10	chr9	123461938	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr10	80930951	80931049	protein_coding	Celf5	intron	ENSMUSG00000034818	NonProperStrand	6	chr13	97190561	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr8	43159637	43159747	LINE	Lx8	L1	chr8Lx843159196	ProperStrand	1	chr17	39846558	39846580	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	40258543	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr12	80517888	80517907	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-3.3010
chr17	32995904	32995936	LINE	L1_Mus3	L1	chr17L1_Mus332994832	NonProperStrand	4	chr12	111793243	111793313	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	ProperStrand	236	1	-14.9637
chr12	11091996	11092012	LINE	Lx8	L1	chr12Lx811091971	ProperStrand	5	chr9	123461957	123462032	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr19	52124112	52124212	LINE	L1_Mus1	L1	chr19L1_Mus152124090	NonProperStrand	1	chr16	69137449	69137539	LTR	RLTR31A_Mm	ERVK	chr16RLTR31A_Mm69137073	NonProperStrand	1	1	-inf
chr7	99105427	99105527	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	chr5	108600040	108600130	protein_coding	Ccdc18	intron	ENSMUSG00000056531	NonProperStrand	57	1	-7.5285
chr14	76424544	76424617	DNA	RCHARR1	MER1_type	chr14RCHARR176424538	NonProperStrand	1	chr13	97190554	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr16	23110382	23110421	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	123	chr3	96558133	96558182	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	1	-10.0536
chr4	132220349	132220466	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr3	96237968	96237996	protein_coding	BC107364	utr3	ENSMUSG00000046317	ProperStrand	2	1	-18.3348
chr8	71802308	71802342	LINE	L1_Mm	L1	chr8L1_Mm71801709	NonProperStrand	1	chr9	123462079	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	18783369	18783476	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr6	83176109	83176127	protein_coding	Slc4a5	intron	ENSMUSG00000068323	ProperStrand	48	1	-7.3541
chr17	39848572	39848629	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	106761309	106761330	protein_coding	Tk2	intron	ENSMUSG00000035824	ProperStrand	8	1	-5.4397
chr11	109011673	109011718	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	107323811	107323866	LINE	L2	L2	chr3L2107323702	NonProperStrand	1	1	-inf
chr5	144807481	144807581	SINE	B4A	B4	chr5B4A144807422	ProperStrand	3	chr5	144810312	144810402	Satellite	ZP3AR	Satellite	chr5ZP3AR144810116	ProperStrand	5	3	-inf
chr9	123461929	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	17575739	17575780	protein_coding	Lix1	intron	ENSMUSG00000047786	NonProperStrand	10	1	-4.3847
chr11	99008292	99008341	protein_coding	Ccr7	intron	ENSMUSG00000037944	ProperStrand	29	chr9	8021775	8021811	protein_coding	9230110C19Rik	utr3	ENSMUSG00000053070	NonProperStrand	1	1	-inf
chr15	34440575	34441241	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	chr2	5379296	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-9.0828
chr13	112578183	112578239	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr10	82754396	82754486	protein_coding	Slc41a2	intron	ENSMUSG00000034591	ProperStrand	45	1	-4.7570
chr14	45379227	45379302	LINE	L1Md_F2	L1	chr14L1Md_F245378635	ProperStrand	3	chr14	45381203	45381279	LTR	IAPEY3-int	ERVK	chr14IAPEY3-int45379901	ProperStrand	1	1	-inf
chr17	39842997	39843066	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr4	141148399	141148489	protein_coding	Fblim1	intron	ENSMUSG00000006219	NonProperStrand	30	2	-10.9269
chr16	25034311	25034357	LTR	RMER15	ERVL	chr16RMER1525034318	ProperStrand	1	chr17	39847024	39847059	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	146261007	146261069	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	46675043	46675118	protein_coding	Cul9	intron	ENSMUSG00000040327	ProperStrand	54	1	-5.2675
chr3	135557597	135557662	LINE	L1_Mm	L1	chr3L1_Mm135557390	ProperStrand	2	chr3	135556822	135556892	LINE	Lx	L1	chr3Lx135555939	NonProperStrand	6	2	-inf
chr1	93846767	93846803	protein_coding	Hdac4	intron	ENSMUSG00000026313	NonProperStrand	9	chr12	102702808	102702852	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-11.6429
chr13	108143934	108144007	LINE	L1Md_F2	L1	chr13L1Md_F2108138655	ProperStrand	5	chr10	28268209	28268259	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	1	-15.3563
chr17	39846759	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	104794972	104795040	SINE	PB1D7	Alu	chr3PB1D7104794950	NonProperStrand	1	1	-inf
chr14	66977630	66977710	protein_coding	Stmn4	intron	ENSMUSG00000022044	NonProperStrand	23	chr12	54029288	54029336	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-11.5688
chr14	121614307	121614399	protein_coding	Farp1	intron	ENSMUSG00000025555	NonProperStrand	67	chr9	118674950	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.7541
chr1	97710043	97710133	LINE	L1Md_A	L1	chr1L1Md_A97706300	NonProperStrand	2	chr1	97710596	97710696	LINE	L1Md_A	L1	chr1L1Md_A97710165	NonProperStrand	1	1	-inf
chr13	106990012	106993171	LINE	L1MDa	L1	chr13L1MDa106989451	ProperStrand	2	chr17	39842994	39843070	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	1	-12.8014
chr4	119278262	119278339	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	chr11	87445094	87445150	protein_coding	Hsf5	exon	ENSMUSG00000070345	ProperStrand	342	1	-7.1408
chr2	103775990	103776134	SINE	MIRb	MIR	chr2MIRb103775885	ProperStrand	2	chr2	5379260	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr4	117558804	117558927	protein_coding	Atp6v0b	intron	ENSMUSG00000033379	NonProperStrand	7	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-13.3257
chr17	56068293	56068411	LINE	MusHAL1	L1	chr17MusHAL156067426	ProperStrand	1	chr17	39847391	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	32196160	32196201	SINE	PB1D10	Alu	chr19PB1D1032196162	NonProperStrand	1	chr19	32198017	32198105	protein_coding	Sgms1	utr3	ENSMUSG00000040451	ProperStrand	159	1	-inf
chr14	99967682	99967760	LINE	L1_Mus3	L1	chr14L1_Mus399966824	ProperStrand	14	chr8	13346457	13346531	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	1	-12.2729
chr14	28089309	28089397	protein_coding	Arhgef3	intron	ENSMUSG00000021895	NonProperStrand	6	chr14	28297703	28297803	protein_coding	Ccdc66	intron	ENSMUSG00000046753	ProperStrand	2	1	-inf
chr9	88476893	88476941	protein_coding	Trim43a	exon	ENSMUSG00000067399	NonProperStrand	40	chr11	48833868	48833960	protein_coding	9930111J21Rik2	intron	ENSMUSG00000069892	ProperStrand	9	2	-inf
chr17	39847512	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	48475757	48477798	protein_coding-noncoding	Mbnl3	utr3	ENSMUSG00000036109	ProperStrand	1	1	-inf
chr2	101680604	101680722	protein_coding	Prr5l	intron	ENSMUSG00000032841	NonProperStrand	22	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	2	-15.6383
chr11	6528074	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.9309
chr19	10622462	10623370	protein_coding	Tmem216	intron	ENSMUSG00000024667	NonProperStrand	60	chr7	141162852	141162897	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-9.8078
chr11	6429196	6433784	LTR	IAPEz-int	ERVK	chr11IAPEz-int6431957	NonProperStrand	8	chr11	6428367	6429130	lincRNA	Gm11974	exon	ENSMUSG00000085156	ProperStrand	3	1	-inf
chr17	39843795	39843905	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr8	109324207	109324228	protein_coding	Tmco7	intron	ENSMUSG00000041949	ProperStrand	22	1	-4.8672
chr9	3355206	3355250	protein_coding	Alkbh8	intron	ENSMUSG00000025899	ProperStrand	14	chr16	4230859	4230890	pseudogene	Gm5766	.	ENSMUSG00000089645	NonProperStrand	1	1	-inf
chr13	112505584	112505674	protein_coding	Mier3	utr3	ENSMUSG00000032727	ProperStrand	63	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.5301
chr13	100581372	100581472	LINE	L1Md_F2	L1	chr13L1Md_F2100580469	ProperStrand	1	chr2	25192745	25192835	protein_coding	Man1b1	intron	ENSMUSG00000036646	ProperStrand	5	1	-inf
chr4	33187163	33188997	LINE	Lx3A	L1	chr4Lx3A33188940	ProperStrand	2	chr4	33189034	33189124	Simple_repeat	(TTCTC)n	Simple_repeat	chr4(TTCTC)n33189048	NonProperStrand	2	2	-inf
chr17	39847159	39847267	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	82086465	82089518	protein_coding	1500009C09Rik	intron	ENSMUSG00000068099	ProperStrand	1	1	-inf
chr7	81227675	81227775	LINE	L1Md_F2	L1	chr7L1Md_F281226429	ProperStrand	7	chr2	5379247	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.8922
chr12	85095032	85095122	LTR	MTD	MaLR	chr12MTD85094996	NonProperStrand	3	chr12	85095212	85095312	SINE	B1_Mus2	Alu	chr12B1_Mus285095235	NonProperStrand	3	3	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr5	137295823	137295925	protein_coding	Emid2	intron	ENSMUSG00000004415	ProperStrand	82	1	-9.1811
chr17	31057724	31057797	protein_coding	Glp1r	intron	ENSMUSG00000024027	ProperStrand	28	chr19	29007678	29007716	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	59	1	-13.6017
chr5	133612901	133612991	LTR	MTE2a	MaLR	chr5MTE2a133612912	ProperStrand	1	chr5	133613047	133613147	LTR	MTE2a	MaLR	chr5MTE2a133613071	ProperStrand	1	1	-inf
chr4	86985246	86985262	SINE	B3	B2	chr4B386985233	ProperStrand	10	chr10	30554904	30554992	protein_coding	Hey2	intron	ENSMUSG00000019789	ProperStrand	1	1	-inf
chr18	4391920	4392020	protein_coding	Mtpap	intron	ENSMUSG00000024234	ProperStrand	6	chr14	52013098	52013188	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	2	-inf
chrX	151888493	151888509	LINE	L1Md_T	L1	chrXL1Md_T151887054	ProperStrand	1	chr17	39846583	39846722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	85239346	85239436	LINE	L1Md_F2	L1	chr14L1Md_F285239325	NonProperStrand	1	chr14	85239611	85239711	LINE	L1_Mm	L1	chr14L1_Mm85239628	ProperStrand	1	1	-inf
chr13	94232170	94233096	protein_coding	Jmy	intron	ENSMUSG00000021690	ProperStrand	21	chr1	36896681	36896716	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	3	-19.8931
chr11	107289343	107289433	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	NonProperStrand	8	chr4	36875159	36875259	protein_coding	Lingo2	intron	ENSMUSG00000045083	NonProperStrand	34	1	-17.3098
chr11	109011787	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	99157473	99157551	LINE	L1_Mus4	L1	chr14L1_Mus499156839	NonProperStrand	2	1	-13.5345
chr17	39846231	39847669	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	97190541	97190632	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	222	-inf
chr9	21669582	21670509	SINE	B4A	B4	chr9B4A21669534	NonProperStrand	4	chr9	21668980	21669570	SINE	RSINE1	B4	chr9RSINE121668965	NonProperStrand	4	4	-inf
chr3	63641541	63641631	protein_coding	Plch1	intron	ENSMUSG00000036834	NonProperStrand	2	chr3	64013406	64013506	pseudogene	Gm18294	.	ENSMUSG00000093416	NonProperStrand	4	1	-22.1285
chr13	57522392	57522473	LINE	L1MB3	L1	chr13L1MB357521591	ProperStrand	1	chr17	39846941	39847008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	120572821	120572921	LINE	L1Md_F2	L1	chr8L1Md_F2120567887	ProperStrand	32	chr2	90395163	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-10.9899
chr17	39846759	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	81039501	81039629	SINE	B4	B4	chr12B481039490	NonProperStrand	1	1	-inf
chr16	61564387	61564477	LTR	ORR1D-int	MaLR	chr16ORR1D-int61564388	ProperStrand	1	chr16	61564784	61564884	LTR	ORR1D2	MaLR	chr16ORR1D261564516	ProperStrand	1	1	-inf
chr2	33366210	33366236	LTR	ORR1B2-int	MaLR	chr2ORR1B2-int33365655	ProperStrand	1	chr1	184049841	184049946	SINE	B1_Mm	Alu	chr1B1_Mm184049824	ProperStrand	1	1	-inf
chr17	39847675	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	69453311	69453328	protein_coding	Fxr2	intron	ENSMUSG00000018765	NonProperStrand	4	1	-3.7035
chr2	92281515	92281554	LTR	MYSERV6-int	ERVK	chr2MYSERV6-int92281073	NonProperStrand	1	chr2	92276755	92276836	LTR	ORR1D1	MaLR	chr2ORR1D192276596	NonProperStrand	1	1	-inf
chr13	95797218	95797284	protein_coding	Pde8b	intron	ENSMUSG00000021684	ProperStrand	31	chr17	30883196	30883262	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	1	-12.4551
chr11	70963836	70963919	LINE	L1_Mus1	L1	chr11L1_Mus170963737	ProperStrand	2	chr2	102829373	102829446	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-17.3731
chr17	50420124	50420163	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr7	19696809	19696842	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-9.5788
chr17	39847388	39847418	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	4634762	4634782	protein_coding	Itsn2	exon	ENSMUSG00000020640	NonProperStrand	4	1	-3.7035
chr9	62910290	62910376	LTR	RLTR25B	ERVK	chr9RLTR25B62910311	NonProperStrand	1	chr9	40804799	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr17	39847230	39847417	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	4702052	4702170	protein_coding	Nf2	intron	ENSMUSG00000009073	ProperStrand	20	3	-5.1210
chr17	39847181	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	49263503	49263575	SINE	B2_Mm1a	B2	chr6B2_Mm1a49263492	ProperStrand	5	1	-4.3348
chrX	162566813	162566903	LTR	RLTR10-int	ERVK	chrXRLTR10-int162566535	NonProperStrand	1	chr8	70509318	70509556	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-inf
chr14	47413802	47416388	LTR	MMERVK10C-int	ERVK	chr14MMERVK10C-int47414939	NonProperStrand	4	chr1	160537645	160537745	protein_coding	Astn1	intron	ENSMUSG00000026587	NonProperStrand	77	2	-inf
chr14	122327104	122327225	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	chr13	33986425	33986449	protein_coding	Serpinb6c	intron	ENSMUSG00000052180	ProperStrand	6	1	-15.4497
chr6	91684246	91684307	protein_coding	Slc6a6	intron	ENSMUSG00000030096	ProperStrand	99	chr7	30563135	30563193	protein_coding	Zfp84	utr3	ENSMUSG00000046185	NonProperStrand	5	1	-16.1899
chr9	123461882	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr17	33948677	33948854	protein_coding	Kank3	intron	ENSMUSG00000042099	ProperStrand	5	1	-5.8308
chr9	102625737	102625837	protein_coding-noncoding	Amotl2	utr5	ENSMUSG00000032531	NonProperStrand	2	chr9	102625941	102626031	protein_coding	Amotl2	exon	ENSMUSG00000032531	NonProperStrand	3	2	-inf
chr5	146261024	146261070	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	108523975	108524025	protein_coding	Arih2	intron	ENSMUSG00000064145	NonProperStrand	62	1	-4.9992
chr9	88454200	88454227	protein_coding	Zfp949	intron	ENSMUSG00000032425	NonProperStrand	42	chr2	122123777	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.3447
chr17	39847866	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	98878629	98878751	protein_coding-noncoding	Top2a	utr3	ENSMUSG00000020914	NonProperStrand	2	1	-5.4040
chr3	6305578	6305678	LINE	L1Md_T	L1	chr3L1Md_T6299058	ProperStrand	15	chr12	116563405	116563495	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n116563424	NonProperStrand	3	1	-inf
chrX	101705331	101705435	LINE	L1MEf	L1	chrXL1MEf101705287	NonProperStrand	6	chr17	50420129	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-14.7123
chr1	119732132	119732222	LINE	L1_Mur2	L1	chr1L1_Mur2119731841	ProperStrand	2	chr17	39847858	39847958	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr10	40258495	40258577	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr15	80962725	80962784	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	1	-3.5066
chr17	39847330	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	118674948	118675043	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	157	-inf
chr11	115167747	115167837	LINE	L2b	L2	chr11L2b115167743	ProperStrand	2	chr11	115167850	115167950	SINE	B1_Mur3	Alu	chr11B1_Mur3115167878	ProperStrand	2	2	-inf
chr6	37983975	37984008	protein_coding	Svopl	intron	ENSMUSG00000029830	ProperStrand	5	chr14	61655313	61655420	protein_coding	Tnfrsf19	intron	ENSMUSG00000060548	NonProperStrand	11	2	-inf
chr17	31066624	31066713	protein_coding	Glp1r	intron	ENSMUSG00000024027	ProperStrand	28	chr9	104163724	104163752	protein_coding	Dnajc13	intron	ENSMUSG00000032560	ProperStrand	36	1	-14.6049
chr2	120435339	120436671	protein_coding	Haus2	utr5	ENSMUSG00000027285	ProperStrand	3	chr2	120433767	120433857	protein_coding	Lrrc57	intron	ENSMUSG00000027286	NonProperStrand	3	3	-inf
chr1	160272553	160272632	protein_coding	Fam5b	intron	ENSMUSG00000004031	ProperStrand	20	chr13	44869594	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.6542
chrX	105839973	105845522	LINE	L1Md_F2	L1	chrXL1Md_F2105843907	NonProperStrand	3	chr4	46140663	46140789	protein_coding	Tstd2	intron	ENSMUSG00000035495	NonProperStrand	8	1	-20.8155
chr2	132716979	132717079	LTR	MERVL-int	ERVL	chr2MERVL-int132711956	NonProperStrand	27	chr2	132717306	132717396	LTR	MT2_Mm	ERVL	chr2MT2_Mm132717315	NonProperStrand	2	2	-inf
chr14	79861312	79861412	protein_coding	Wbp4	utr3	ENSMUSG00000022023	ProperStrand	22	chr13	84421936	84422026	protein_coding	Tmem161b	intron	ENSMUSG00000035762	NonProperStrand	2	1	-21.2761
chr5	81506491	81506591	protein_coding	Lphn3	intron	ENSMUSG00000037605	ProperStrand	27	chr5	103567279	103567369	protein_coding	Mapk10	intron	ENSMUSG00000046709	NonProperStrand	49	1	-14.0489
chr14	12037356	12037422	LTR	MTD	MaLR	chr14MTD12037373	NonProperStrand	1	chr17	39847692	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	12784983	12785048	antisense	Gm15962	.	ENSMUSG00000084981	ProperStrand	25	chr4	94587286	94587336	protein_coding	4930579C15Rik	intron	ENSMUSG00000028575	ProperStrand	21	1	-15.9259
chr19	5797398	5797442	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr13	49623881	49623977	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	1	-3.5005
chr12	99645562	99645670	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr17	39846411	39846912	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	14	-11.9750
chr11	109011676	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	170304615	170304661	protein_coding	Pbx1	intron	ENSMUSG00000052534	ProperStrand	32	1	-7.3504
chr4	43492927	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	chr1	136364979	136365014	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-11.3551
chr17	39847341	39847843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	86704392	86705426	SINE	B3	B2	chr10B386705257	ProperStrand	7	2	-4.7560
chr9	59454459	59486019	protein_coding	Parp6	intron	ENSMUSG00000025237	NonProperStrand	38	chr1	132504427	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	1	-14.4939
chr1	152375211	152375275	LINE	L1VL4	L1	chr1L1VL4152374789	ProperStrand	1	chr17	39847173	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr3	35979530	35979620	protein_coding-noncoding	Acad9	utr5	ENSMUSG00000027710	ProperStrand	1	chr3	35979692	35979792	protein_coding	Acad9	intron	ENSMUSG00000027710	ProperStrand	1	1	-inf
chr11	45912577	45912647	protein_coding	Adam19	intron	ENSMUSG00000011256	ProperStrand	66	chr17	28041550	28041625	protein_coding	Taf11	intron	ENSMUSG00000024218	NonProperStrand	26	1	-13.5248
chr19	60773640	60773954	LINE	Lx8	L1	chr19Lx860773717	NonProperStrand	1	chr17	39846719	39846748	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	19929122	19929212	protein_coding-noncoding	Hps3	utr3	ENSMUSG00000027615	NonProperStrand	1	chr3	19929450	19929550	protein_coding	Hps3	intron	ENSMUSG00000027615	NonProperStrand	2	1	-inf
chr3	107510093	107510193	SINE	ID_B1	B4	chr3ID_B1107510061	ProperStrand	1	chr3	107314887	107314977	protein_coding	Slc6a17	intron	ENSMUSG00000027894	ProperStrand	46	1	-inf
chr2	6024774	6024817	protein_coding	5430407P10Rik	intron	ENSMUSG00000045319	NonProperStrand	12	chr5	27260584	27260644	protein_coding	Dpp6	intron	ENSMUSG00000061576	ProperStrand	96	1	-14.3635
chr17	39846461	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	70607903	70613050	lincRNA	Gm16600	intron	ENSMUSG00000085557	NonProperStrand	20	3	-3.1087
chrX	129732881	129732971	LINE	Lx2A1	L1	chrXLx2A1129731636	NonProperStrand	1	chrX	129733484	129733584	LINE	Lx2A1	L1	chrXLx2A1129732990	ProperStrand	1	1	-inf
chr6	66547911	66547994	LINE	L1Md_F2	L1	chr6L1Md_F266547831	NonProperStrand	2	chr5	76966844	76966866	protein_coding	Exoc1	exon	ENSMUSG00000036435	ProperStrand	20	1	-20.4416
chr14	51914053	51914115	LINE	L1_Mur2	L1	chr14L1_Mur251913082	ProperStrand	1	chr17	39847551	39847623	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	14513437	14513537	LINE	L1_Mur3	L1	chr3L1_Mur314512776	NonProperStrand	1	chr3	14513830	14513920	LINE	L1_Mur3	L1	chr3L1_Mur314513514	NonProperStrand	1	1	-inf
chr4	123565361	123565420	LINE	L1_Mus2	L1	chr4L1_Mus2123565003	NonProperStrand	1	chr4	123564604	123564653	LTR	RLTR20B3	ERVK	chr4RLTR20B3123564354	ProperStrand	6	1	-inf
chr17	78970627	78970655	protein_coding	Vit	intron	ENSMUSG00000024076	NonProperStrand	35	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.6461
chr17	39847187	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	89302082	89302099	protein_coding	Ankfn1	exon	ENSMUSG00000047773	ProperStrand	4	1	-4.8204
chrX	151907352	151907413	LINE	Lx6	L1	chrXLx6151907176	ProperStrand	14	chrX	151908732	151908814	LINE	Lx6	L1	chrXLx6151908502	ProperStrand	15	3	-23.7350
chr11	116672040	116674221	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	93	chr13	97190550	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-7.1468
chr4	38817242	38817342	LTR	IAPLTR1_Mm	ERVK	chr4IAPLTR1_Mm38817127	NonProperStrand	1	chr4	25673562	25673652	protein_coding	Fut9	intron	ENSMUSG00000055373	NonProperStrand	7	1	-inf
chr1	124452884	124452974	Other	RMER1A	Other	chr1RMER1A124452395	ProperStrand	1	chr1	124453087	124453187	SINE	B3	B2	chr1B3124453051	ProperStrand	1	1	-inf
chr17	39847341	39847421	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	155395869	155402692	protein_coding-noncoding	Gss	utr3	ENSMUSG00000027610	ProperStrand	4	1	-3.7035
chr19	4798908	4799002	protein_coding	Rbm14	intron	ENSMUSG00000006456	ProperStrand	194	chr11	74716283	74716319	protein_coding	Tsr1	intron	ENSMUSG00000038335	NonProperStrand	3	1	-16.0371
chr9	122857570	122861740	protein_coding	1110059G10Rik	intron	ENSMUSG00000032551	ProperStrand	14	chr9	122860323	122861870	protein_coding	Kif15	intron	ENSMUSG00000036768	NonProperStrand	9	3	-inf
chr16	44157145	44157885	protein_coding	Naa50	intron	ENSMUSG00000022698	ProperStrand	41	chr8	13167860	13167929	protein_coding	Lamp1	exon	ENSMUSG00000031447	ProperStrand	46	1	-13.3294
chr1	113957764	113957785	LINE	Lx3C	L1	chr1Lx3C113956855	NonProperStrand	1	chr13	93432163	93432289	protein_coding	Serinc5	intron	ENSMUSG00000021703	NonProperStrand	22	1	-inf
chrX	4899366	4899392	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr15	89131043	89131059	protein_coding	Sbf1	exon	ENSMUSG00000036529	NonProperStrand	2	1	-20.2142
chr17	12750725	12750825	LINE	L1Md_F2	L1	chr17L1Md_F212744083	ProperStrand	12	chr17	12750859	12750949	LTR	IAP-d-int	ERVK	chr17IAP-d-int12750863	NonProperStrand	1	1	-inf
chr2	22744862	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	104058171	104058216	protein_coding	Dnajc13	intron	ENSMUSG00000032560	ProperStrand	36	1	-7.8287
chr18	25293323	25293339	protein_coding	5730494M16Rik	intron	ENSMUSG00000024269	ProperStrand	6	chr2	5379240	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr13	74738246	74738279	LTR	RMER10A	ERVL	chr13RMER10A74738237	ProperStrand	1	chr16	13857395	13857467	protein_coding	Pdxdc1	intron	ENSMUSG00000022680	NonProperStrand	23	1	-inf
chr13	22043296	22043355	protein_coding	Zfp184	intron	ENSMUSG00000006720	ProperStrand	13	chr13	23684218	23684264	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	NonProperStrand	15	1	-17.9502
chr15	84199541	84199641	Other	RMER1C	Other	chr15RMER1C84199570	NonProperStrand	2	chr15	84199397	84199487	Simple_repeat	(GAAA)n	Simple_repeat	chr15(GAAA)n84199363	ProperStrand	2	2	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	90861107	90861160	Simple_repeat	(TCCA)n	Simple_repeat	chr6(TCCA)n90861052	NonProperStrand	1	1	-inf
chr17	39843936	39844024	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr17	27126126	27126161	protein_coding	Ggnbp1	intron	ENSMUSG00000048731	NonProperStrand	19	1	-6.2308
chr1	89684173	89684221	protein_coding-noncoding	Atg16l1	utr5	ENSMUSG00000026289	ProperStrand	32	chr3	84496537	84496595	protein_coding	Arfip1	intron	ENSMUSG00000074513	ProperStrand	40	1	-14.1138
chr17	33952054	33952280	protein_coding	Kank3	intron	ENSMUSG00000042099	NonProperStrand	107	chr13	97190552	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-6.7416
chr2	128666696	128668941	protein_coding	Tmem87b	intron	ENSMUSG00000014353	NonProperStrand	20	chr10	41188674	41220931	protein_coding	Ppil6	intron	ENSMUSG00000078451	NonProperStrand	20	1	-16.4950
chr11	4882920	4883020	LTR	MTC	MaLR	chr11MTC4882904	NonProperStrand	1	chr11	4882803	4882893	SINE	B1_Mus2	Alu	chr11B1_Mus24882758	ProperStrand	1	1	-inf
chr17	39847388	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	149594016	149594133	SINE	PB1D9	Alu	chr4PB1D9149593970	NonProperStrand	1	1	-inf
chr13	47058968	47059068	LTR	RLTR12A	ERVK	chr13RLTR12A47058943	ProperStrand	1	chr13	47058733	47058823	LTR	RMER10B	ERVL	chr13RMER10B47058664	NonProperStrand	1	1	-inf
chrX	162790363	162790379	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	chr7	133031014	133031093	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-5.8340
chr3	104784986	104785050	LTR	MYSERV-int	ERVK	chr3MYSERV-int104784714	ProperStrand	2	chr10	70401521	70401604	protein_coding	Bicc1	intron	ENSMUSG00000014329	NonProperStrand	34	1	-19.8869
chr4	95750543	95750592	LINE	L1Md_F2	L1	chr4L1Md_F295746204	NonProperStrand	6	chr4	25788372	25788449	miRNA	AL683818.1	.	ENSMUSG00000076977	ProperStrand	1	1	-inf
chr12	96194813	96194913	LINE	L1_Mus2	L1	chr12L1_Mus296194775	ProperStrand	1	chr12	96194536	96194626	LINE	Lx6	L1	chr12Lx696194316	NonProperStrand	1	1	-inf
chr6	113108516	113108580	SINE	PB1D7	Alu	chr6PB1D7113108500	ProperStrand	1	chr5	144159612	144159658	antisense	RP23-372N19.1	.	ENSMUSG00000093720	NonProperStrand	16	1	-inf
chr17	33550518	33550573	LINE	L1_Mus2	L1	chr17L1_Mus233549480	NonProperStrand	2	chr17	33551025	33551130	LINE	Lx	L1	chr17Lx33550790	NonProperStrand	3	2	-inf
chr8	80710620	80711690	LTR	MLT2B3	ERVL	chr8MLT2B380710463	NonProperStrand	1	chr4	145466670	145466770	protein_coding	Gm13235	intron	ENSMUSG00000078500	ProperStrand	7	1	-inf
chr17	63335539	63335594	LTR	ORR1E-int	MaLR	chr17ORR1E-int63334875	NonProperStrand	5	chr17	63335805	63335868	LTR	ORR1E	MaLR	chr17ORR1E63335683	NonProperStrand	1	1	-inf
chr2	32963516	32963745	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	chr9	60528330	60528346	protein_coding	Lrrc49	exon	ENSMUSG00000047766	ProperStrand	10	1	-12.5647
chr15	19852871	19852890	LINE	L1Md_F2	L1	chr15L1Md_F219852104	ProperStrand	1	chr17	39846461	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	132535575	132535645	protein_coding	Fgr	intron	ENSMUSG00000028874	ProperStrand	28	chr18	34749555	34750768	protein_coding	4933408B17Rik	intron	ENSMUSG00000049357	ProperStrand	5	2	-inf
chr6	121186155	121186241	LTR	RLTR24	ERV1	chr6RLTR24121186083	NonProperStrand	1	chr6	121185980	121185999	SINE	ID_B1	B4	chr6ID_B1121185907	NonProperStrand	1	1	-inf
chr12	67667892	67667982	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	chr11	72623258	72623358	protein_coding	Zzef1	intron	ENSMUSG00000055670	ProperStrand	78	2	-17.3405
chr12	71164607	71164707	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	chr17	12203972	12204062	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	2	-15.1068
chrX	113157770	113157870	LTR	ORR1B1-int	MaLR	chrXORR1B1-int113157116	NonProperStrand	4	chrX	113157890	113157980	LTR	ORR1B1	MaLR	chrXORR1B1113157876	NonProperStrand	4	4	-inf
chr3	89911866	89911947	protein_coding	Nup210l	intron	ENSMUSG00000027939	NonProperStrand	45	chr9	118674951	118675008	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.5396
chr11	116957606	116957681	antisense	Gm11730	.	ENSMUSG00000087057	NonProperStrand	4	chr9	123462081	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr3	135605139	135605158	SINE	RSINE1	B4	chr3RSINE1135605065	NonProperStrand	8	chr2	5379314	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.6062
chr10	4029619	4029674	LINE	L1M2	L1	chr10L1M24029341	NonProperStrand	4	chr4	149723582	149723657	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	1	-14.6924
chr17	39848124	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	14	chr8	33879069	33879098	LTR	MTD	MaLR	chr8MTD33878837	ProperStrand	1	1	-inf
chr2	90723693	90725640	LTR	RMER19C	ERVK	chr2RMER19C90723509	NonProperStrand	3	chr2	90733120	90733191	SINE	B1_Mus2	Alu	chr2B1_Mus290733065	ProperStrand	2	1	-20.2824
chr4	91461030	91461103	LINE	Lx2	L1	chr4Lx291459986	ProperStrand	1	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr2	24450050	24450150	LTR	RodERV21-int	ERV1	chr2RodERV21-int24450033	ProperStrand	1	chr2	24449932	24450022	pseudogene	Gm13416	.	ENSMUSG00000084241	NonProperStrand	1	1	-inf
chr9	6514978	6515068	LINE	L1Md_F2	L1	chr9L1Md_F26510571	ProperStrand	1	chr9	14229215	14229315	LTR	MERVL-int	ERVL	chr9MERVL-int14224383	ProperStrand	1	1	-inf
chr13	29972390	29972425	SINE	B4A	B4	chr13B4A29972345	ProperStrand	4	chr13	29971736	29971851	SINE	ID_B1	B4	chr13ID_B129971762	NonProperStrand	6	1	-inf
chr6	30410877	30410977	antisense	1700012C14Rik	.	ENSMUSG00000085470	ProperStrand	7	chr2	44861516	44861606	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	2	-inf
chr17	39846655	39846778	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	71554061	71554082	protein_coding	Gdi1	intron	ENSMUSG00000015291	ProperStrand	1	1	-inf
chr17	39846759	39846839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	23091970	23092034	SINE	B2_Mm2	B2	chr19B2_Mm223091956	ProperStrand	1	1	-inf
chr6	85949752	85950052	LTR	ORR1A3-int	MaLR	chr6ORR1A3-int85949725	NonProperStrand	2	chr6	85945721	85945791	LTR	RMER16	ERVK	chr6RMER1685945714	NonProperStrand	2	2	-inf
chr17	39846921	39847048	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	47017714	47017733	LTR	IAPLTR2_Mm	ERVK	chr3IAPLTR2_Mm47017631	ProperStrand	1	1	-inf
chr10	95320701	95320791	SINE	ID_B1	B4	chr10ID_B195320653	NonProperStrand	4	chr10	95320568	95320668	SINE	PB1D10	Alu	chr10PB1D1095320546	NonProperStrand	4	4	-inf
chr6	33691333	33691398	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr5	142904427	142904498	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-3.2286
chr13	60735453	60735572	protein_coding	Dapk1	intron	ENSMUSG00000021559	ProperStrand	39	chr1	131573996	131574035	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-9.8327
chr17	39843001	39843052	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr9	103352084	103352178	protein_coding	Bfsp2	intron	ENSMUSG00000032556	ProperStrand	72	1	-5.0318
chr11	100481508	100481700	protein_coding	Nkiras2	intron	ENSMUSG00000017837	NonProperStrand	16	chr17	27634223	27634399	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-11.8474
chr4	24334147	24334237	LINE	Lx8	L1	chr4Lx824333364	NonProperStrand	1	chr4	24334381	24334481	LTR	ORR1C2	MaLR	chr4ORR1C224334391	ProperStrand	1	1	-inf
chr15	83438894	83439176	protein_coding-noncoding	Scube1	utr3	ENSMUSG00000016763	ProperStrand	6	chr15	83438374	83439409	protein_coding	Scube1	intron	ENSMUSG00000016763	ProperStrand	120	2	-inf
chr1	100180180	100180219	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr7	99924012	99924130	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-8.1673
chr6	113581383	113581423	protein_coding	Vhl	utr3	ENSMUSG00000033933	ProperStrand	7	chr12	110692374	110692635	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	1	-13.6206
chr15	84831690	84831718	LTR	MTE2a	MaLR	chr15MTE2a84831455	NonProperStrand	1	chr15	84839345	84839387	Low_complexity	GA-rich	Low_complexity	chr15GA-rich84839280	NonProperStrand	1	1	-inf
chr11	30821343	30821433	LTR	RLTR28B	ERVL	chr11RLTR28B30821081	ProperStrand	1	chr11	30821499	30821599	SINE	RSINE1	B4	chr11RSINE130821495	ProperStrand	1	1	-inf
chr8	3623263	3623345	lincRNA	2900053A13Rik	exon	ENSMUSG00000087687	ProperStrand	2	chr5	115489457	115489527	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-16.6631
chr7	96723044	96723128	LINE	Lx6	L1	chr7Lx696722851	NonProperStrand	2	chr2	36094031	36094047	protein_coding	Ptgs1	intron	ENSMUSG00000047250	ProperStrand	13	1	-inf
chr17	39847771	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	43499519	43499593	SINE	B3A	B2	chr4B3A43499512	ProperStrand	1	1	-inf
chr15	79538526	79538557	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	NonProperStrand	156	chr14	20747362	20747433	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	1	-8.3527
chrX	74242962	74243062	DNA	RCHARR1	MER1_type	chrXRCHARR174242745	ProperStrand	7	chrX	74246069	74246159	LINE	L1Md_F2	L1	chrXL1Md_F274245839	NonProperStrand	7	5	-inf
chr12	110698612	110698684	protein_coding	Dlk1	utr3	ENSMUSG00000040856	NonProperStrand	246	chr3	41463737	41463799	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	1	-6.4715
chr11	75799120	75799220	SINE	B2_Mm2	B2	chr11B2_Mm275799057	ProperStrand	1	chr11	75799236	75799326	SINE	ID_B1	B4	chr11ID_B175799224	ProperStrand	1	1	-inf
chr17	39847890	39847946	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr17	39843880	39843926	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	ProperStrand	15	1	-15.1368
chr19	8942238	8942328	SINE	B1_Mus1	Alu	chr19B1_Mus18942161	ProperStrand	8	chr19	8942347	8943529	SINE	B4A	B4	chr19B4A8943467	ProperStrand	4	3	-inf
chr11	109011786	109011821	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	74952244	74952289	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-4.2511
chr5	110080753	110080808	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int110074476	NonProperStrand	5	chr5	100035106	100035192	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	119	1	-15.8283
chrX	72922699	72922789	LINE	L1Md_A	L1	chrXL1Md_A72922551	ProperStrand	1	chrX	72922349	72922449	LTR	RLTR9E	ERVK	chrXRLTR9E72922355	ProperStrand	1	1	-inf
chr17	23519118	23519208	LINE	L1Md_F3	L1	chr17L1Md_F323518453	ProperStrand	1	chr17	23519485	23519585	LINE	L1_Mur3	L1	chr17L1_Mur323519498	ProperStrand	1	1	-inf
chr17	24975939	24976039	protein_coding	4930528F23Rik	intron	ENSMUSG00000024155	NonProperStrand	27	chr17	24982991	24983081	protein_coding	Hagh	intron	ENSMUSG00000024158	NonProperStrand	8	1	-17.7233
chr6	3201509	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	128675757	128675832	protein_coding-noncoding	Tmem87b	utr5	ENSMUSG00000014353	NonProperStrand	1	1	-inf
chr5	125057699	125057783	protein_coding	Tctn2	intron	ENSMUSG00000029386	NonProperStrand	79	chr5	121826293	121826367	protein_coding	Trafd1	intron	ENSMUSG00000042726	NonProperStrand	3	1	-17.8562
chr7	68131166	68131199	LINE	L1Md_F2	L1	chr7L1Md_F268126430	NonProperStrand	14	chr2	180610189	180610699	lincRNA	Gm14342	intron	ENSMUSG00000086166	NonProperStrand	22	1	-17.0109
chr16	15753114	15753169	protein_coding	Prkdc	intron	ENSMUSG00000022672	ProperStrand	42	chr1	131175881	131175984	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-9.6831
chr9	31298005	31298130	LINE	Lx8	L1	chr9Lx831298029	NonProperStrand	3	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	3	-inf
chr13	43273448	43273548	SINE	B3	B2	chr13B343273319	NonProperStrand	1	chr13	43274045	43274135	SINE	B4A	B4	chr13B4A43273924	ProperStrand	1	1	-inf
chr4	134538446	134538546	LTR	ORR1A2	MaLR	chr4ORR1A2134538220	NonProperStrand	1	chr4	134538584	134538674	SINE	B4A	B4	chr4B4A134538580	NonProperStrand	1	1	-inf
chr4	105162158	105162258	DNA	URR1A	MER1_type	chr4URR1A105162082	ProperStrand	1	chr4	105161938	105162028	LINE	L1PB4	L1	chr4L1PB4105161778	NonProperStrand	1	1	-inf
chr17	39848486	39848521	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr19	24168307	24168364	LTR	RLTR16	ERVK	chr19RLTR1624168214	NonProperStrand	4	1	-6.9461
chr3	138858831	138858931	SINE	B1_Mur1	Alu	chr3B1_Mur1138858853	ProperStrand	1	chr3	138858767	138858857	Simple_repeat	(GAAA)n	Simple_repeat	chr3(GAAA)n138858746	ProperStrand	1	1	-inf
chr17	39847273	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	125163524	125163615	SINE	B1_Mus1	Alu	chr6B1_Mus1125163467	NonProperStrand	2	1	-6.5615
chr17	39847767	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	135542105	135542216	protein_coding	1110049F12Rik	utr5	ENSMUSG00000028669	ProperStrand	3	1	-4.3512
chr4	135337807	135337852	protein_coding	Myom3	intron	ENSMUSG00000037139	NonProperStrand	91	chr1	189126289	189126308	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-12.1618
chr18	63078741	63078757	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr1	163779869	163779885	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	19	1	-15.6866
chr14	67008442	67008532	LTR	ORR1A3	MaLR	chr14ORR1A367008380	ProperStrand	4	chr14	67008213	67008313	LTR	RLTR6-int	ERV1	chr14RLTR6-int67008044	ProperStrand	2	2	-inf
chr14	94358313	94358413	LTR	RMER17C	ERVK	chr14RMER17C94358313	NonProperStrand	1	chr14	94358163	94358253	Simple_repeat	(GAGAA)n	Simple_repeat	chr14(GAGAA)n94358133	ProperStrand	1	1	-inf
chr9	32825665	32825765	LINE	L1Md_F2	L1	chr9L1Md_F232825466	NonProperStrand	1	chr9	32825091	32825181	LINE	L1_Mus3	L1	chr9L1_Mus332822499	NonProperStrand	1	1	-inf
chr2	33364009	33364099	LTR	ORR1B2-int	MaLR	chr2ORR1B2-int33364035	ProperStrand	2	chr2	33363876	33363976	LTR	ORR1B2	MaLR	chr2ORR1B233363722	ProperStrand	2	2	-inf
chr1	190944227	190944333	LTR	ERVL-E-int	ERVL	chr1ERVL-E-int190944192	ProperStrand	1	chr14	70681073	70681122	protein_coding	Ppp3cc	intron	ENSMUSG00000022092	ProperStrand	66	1	-inf
chr17	39847506	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	150246743	150247533	SINE	B1F	Alu	chr4B1F150247442	NonProperStrand	4	2	-6.7714
chr2	20757623	20757690	LINE	L1_Mus2	L1	chr2L1_Mus220755170	ProperStrand	11	chr2	20752185	20752226	SINE	B2_Mm1a	B2	chr2B2_Mm1a20752126	ProperStrand	3	1	-inf
chr17	38718627	38718717	LINE	Lx3A	L1	chr17Lx3A38718410	ProperStrand	1	chr17	38718982	38719082	LINE	Lx7	L1	chr17Lx738718755	NonProperStrand	1	1	-inf
chr10	86046903	86046960	LTR	MERVL-int	ERVL	chr10MERVL-int86044507	ProperStrand	3	chr10	85949529	85949605	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	1	-17.7153
chr8	18841977	18842041	LTR	RMER5	ERV1	chr8RMER518841962	NonProperStrand	2	chr17	39843488	39843579	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	2	-inf
chr17	45609280	45609363	protein_coding	Spats1	intron	ENSMUSG00000023935	NonProperStrand	4	chr7	138839871	138839921	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-14.5271
chr5	139454274	139454351	protein_coding	Pdgfa	intron	ENSMUSG00000025856	ProperStrand	29	chr1	132504426	132504443	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	1	-15.0348
chr4	33349140	33349223	protein_coding	Pnrc1	intron	ENSMUSG00000040128	NonProperStrand	22	chr6	94136352	94136421	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-8.2947
chr9	21921072	21921132	protein_coding	Elof1	intron	ENSMUSG00000013822	ProperStrand	4	chr18	61210025	61210124	protein_coding	Pdgfrb	intron	ENSMUSG00000024620	NonProperStrand	10	3	-inf
chr1	122357170	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr16	13823993	13824074	protein_coding	Ntan1	intron	ENSMUSG00000022681	ProperStrand	11	1	-12.3716
chr17	39846250	39846850	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	18533186	18533290	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	6	-5.2384
chr6	116541931	116542021	LINE	L1_Mm	L1	chr6L1_Mm116541220	NonProperStrand	1	chr6	116542063	116542163	LINE	MusHAL1	L1	chr6MusHAL1116542057	NonProperStrand	1	1	-inf
chr16	23110777	23110865	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr2	5379297	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-4.5817
chr5	146261153	146261195	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	105819462	105819515	protein_coding	Col6a5	intron	ENSMUSG00000091345	ProperStrand	15	1	-7.8289
chr1	59708670	59708718	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	chr15	35560992	35561067	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-10.3401
chr16	25915981	25916081	LINE	L1M5	L1	chr16L1M525915940	NonProperStrand	1	chr16	25916152	25916242	SINE	B2_Mm2	B2	chr16B2_Mm225916163	NonProperStrand	1	1	-inf
chr12	33133706	33133795	LINE	Lx2	L1	chr12Lx233132946	NonProperStrand	1	chr1	21249855	21254717	protein_coding	Gsta3	intron	ENSMUSG00000025934	NonProperStrand	5	1	-inf
chr19	37289150	37289239	protein_coding	March5	intron	ENSMUSG00000023307	NonProperStrand	13	chr13	65288910	65288977	protein_coding	Nlrp4f	intron	ENSMUSG00000032999	NonProperStrand	10	1	-19.0457
chr2	181068357	181068377	protein_coding	Rtel1	intron	ENSMUSG00000038685	NonProperStrand	15	chr11	113901594	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-13.2747
chr17	74415624	74418621	LINE	L1Md_F2	L1	chr17L1Md_F274415355	ProperStrand	1	chr17	74412386	74412649	LTR	RLTR13B3	ERVK	chr17RLTR13B374412084	ProperStrand	1	1	-inf
chr17	39846352	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	65302745	65302765	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n65302735	ProperStrand	1	1	-inf
chr17	34905923	34905993	LTR	RLTR13D6	ERVK	chr17RLTR13D634905863	ProperStrand	2	chr17	34908755	34910708	pseudogene	Tnxa	.	ENSMUSG00000092200	ProperStrand	49	1	-19.9531
chr9	114552044	114552134	SINE	RSINE1	B4	chr9RSINE1114552045	NonProperStrand	3	chr9	114551895	114551995	Simple_repeat	(GGGAA)n	Simple_repeat	chr9(GGGAA)n114551922	NonProperStrand	2	2	-inf
chr10	13689057	13689147	lincRNA	Gm8330	intron	ENSMUSG00000091527	ProperStrand	5	chr14	30834893	30834993	protein_coding	Chdh	intron	ENSMUSG00000015970	ProperStrand	75	1	-16.7504
chr12	75486786	75486876	LINE	Lx8	L1	chr12Lx875486724	ProperStrand	1	chr8	120543257	120543357	Simple_repeat	(TCCA)n	Simple_repeat	chr8(TCCA)n120543250	ProperStrand	1	1	-inf
chr11	33480515	33480534	LTR	MTD	MaLR	chr11MTD33480389	ProperStrand	7	chr14	11583590	11583623	antisense	Gm16542	.	ENSMUSG00000089833	ProperStrand	103	1	-15.3708
chr4	129600847	129600937	SINE	B2_Mm2	B2	chr4B2_Mm2129600772	NonProperStrand	6	chr4	129600953	129601053	SINE	ID_B1	B4	chr4ID_B1129600917	NonProperStrand	8	6	-inf
chr11	68366848	68366930	LTR	ORR1A2	MaLR	chr11ORR1A268366639	ProperStrand	2	chr11	80005561	80005634	protein_coding	Rnf135	intron	ENSMUSG00000020707	ProperStrand	16	1	-inf
chr12	110695101	110695148	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	chr8	106999087	106999167	protein_coding	Ccdc79	intron	ENSMUSG00000052616	NonProperStrand	63	1	-9.0972
chr17	39846411	39846792	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	83767617	83772495	protein_coding	Paip2b	intron	ENSMUSG00000045896	ProperStrand	8	2	-4.2675
chr5	146261268	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	142904557	142904649	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-4.2212
chr11	100538205	100538238	protein_coding	Zfp385c	intron	ENSMUSG00000014198	NonProperStrand	3	chr1	136478463	136478544	protein_coding	Kdm5b	intron	ENSMUSG00000042207	ProperStrand	42	1	-19.2641
chr4	87909242	87909288	protein_coding	BC057079	intron	ENSMUSG00000038368	NonProperStrand	76	chr6	93677210	93677250	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-5.8195
chr3	90476243	90477347	LINE	L1Md_F2	L1	chr3L1Md_F290476905	NonProperStrand	3	chr3	90477352	90480693	SINE	RSINE1	B4	chr3RSINE190480606	ProperStrand	3	3	-inf
chr5	146261174	146261233	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	7299897	7299978	protein_coding	Wdr45	intron	ENSMUSG00000039382	NonProperStrand	1	1	-inf
chr2	30071404	30071507	LINE	L1M5	L1	chr2L1M530071423	ProperStrand	8	chr13	97190590	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.2032
chr17	39847236	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	26634784	26634850	LTR	RMER12	ERVK	chr2RMER1226634733	NonProperStrand	1	1	-inf
chr4	127355378	127355467	LINE	HAL1	L1	chr4HAL1127355368	ProperStrand	1	chr9	123461931	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	40803581	40803612	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr11	87464887	87464928	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-4.0529
chr17	36947127	36947186	DNA	URR1B	MER1_type	chr17URR1B36947005	ProperStrand	1	chr6	3201469	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr17	56367724	56367814	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int56366918	ProperStrand	6	chr17	56367906	56368006	SINE	ID_B1	B4	chr17ID_B156367880	ProperStrand	2	2	-inf
chr18	30330767	30330851	LINE	L1VL2	L1	chr18L1VL230329631	ProperStrand	1	chr7	130566361	130566382	protein_coding	Lcmt1	intron	ENSMUSG00000030763	ProperStrand	1	1	-inf
chr4	130745769	130745866	LTR	ORR1E	MaLR	chr4ORR1E130745779	ProperStrand	1	chr4	130746019	130746064	LTR	RMER19B	ERVK	chr4RMER19B130745901	NonProperStrand	2	1	-inf
chr3	95754428	95754445	LINE	L1_Mus1	L1	chr3L1_Mus195754256	NonProperStrand	1	chr17	39846139	39846206	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr17	39842995	39843054	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr8	72407775	72407824	protein_coding	Cilp2	intron	ENSMUSG00000044006	ProperStrand	19	1	-7.6780
chr5	115490273	115490363	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr17	28835501	28835601	protein_coding	Mapk14	intron	ENSMUSG00000053436	ProperStrand	28	1	-10.6937
chr17	39847692	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	125430020	125430129	protein_coding-noncoding	Ankrd11	utr3	ENSMUSG00000035569	ProperStrand	2	1	-5.4040
chr17	39846334	39846931	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	154888233	154892706	protein_coding	Ahcy	intron	ENSMUSG00000027597	ProperStrand	11	2	-3.3422
chr7	127717999	127718068	LINE	L1Md_F2	L1	chr7L1Md_F2127717742	ProperStrand	1	chr1	55080307	55081117	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	1	-inf
chr11	109011787	109011832	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	75847903	75847958	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	1	-7.4801
chr5	146261265	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr16	78347438	78347517	protein_coding	Cxadr	intron	ENSMUSG00000022865	NonProperStrand	14	1	-10.8310
chr6	92328110	92328201	protein_coding	Prickle2	intron	ENSMUSG00000030020	ProperStrand	72	chr8	42487302	42487402	protein_coding	Frg1	intron	ENSMUSG00000031590	NonProperStrand	1	1	-inf
chr17	39847244	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	128900721	128900751	protein_coding	Clec2g	intron	ENSMUSG00000000248	NonProperStrand	2	1	-6.5615
chr11	109011825	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	62121697	62121804	protein_coding	Spesp1	intron	ENSMUSG00000046846	ProperStrand	9	1	-9.9559
chr15	80077955	80078052	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr7	105741600	105741641	protein_coding	2210018M11Rik	intron	ENSMUSG00000035401	NonProperStrand	5	1	-13.2482
chr1	37300069	37357393	protein_coding	Inpp4a	intron	ENSMUSG00000026113	ProperStrand	55	chr1	37299930	37300020	protein_coding	Cnga3	intron	ENSMUSG00000026114	ProperStrand	23	3	-inf
chr1	72259807	72259863	SINE	B2_Mm2	B2	chr1B2_Mm272259679	NonProperStrand	2	chr1	72261841	72261902	SINE	RSINE1	B4	chr1RSINE172261816	ProperStrand	1	1	-inf
chr9	22353003	22353103	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	chr3	40702738	40702828	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	2	-18.4998
chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	76951774	76951805	SINE	PB1D7	Alu	chr5PB1D776951749	NonProperStrand	1	1	-inf
chr9	66903605	66903695	SINE	B2_Mm1a	B2	chr9B2_Mm1a66903581	NonProperStrand	1	chr9	66903973	66904073	SINE	B3A	B2	chr9B3A66903922	NonProperStrand	1	1	-inf
chr11	32233948	32233964	DNA	Charlie12	MER1_type	chr11Charlie1232233558	NonProperStrand	2	chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-15.3270
chr17	39847444	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	54190143	54190187	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	8	-5.1905
chr11	62359507	62359616	LTR	RMER19B	ERVK	chr11RMER19B62359011	ProperStrand	2	chr5	146261301	146261324	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-15.3270
chr1	30950188	30950288	LTR	MTE2b	MaLR	chr1MTE2b30950120	NonProperStrand	3	chr1	30950372	30950462	LTR	MTE2b	MaLR	chr1MTE2b30950360	NonProperStrand	1	1	-inf
chr7	15310367	15310457	LINE	L1_Mur3	L1	chr7L1_Mur315310284	ProperStrand	1	chr7	15310874	15310974	LTR	RLTR19A	ERVK	chr7RLTR19A15310885	ProperStrand	1	1	-inf
chr17	29269214	29269283	antisense	Gm16194	.	ENSMUSG00000084956	ProperStrand	1	chr17	29276430	29276489	protein_coding	Rab44	exon	ENSMUSG00000064147	ProperStrand	7	1	-inf
chr1	64538005	64538095	LTR	MERVL_2A-int	ERVL	chr1MERVL_2A-int64537901	ProperStrand	1	chr1	64538118	64538218	LTR	MT2A	ERVL	chr1MT2A64538108	ProperStrand	1	1	-inf
chr2	181329766	181329866	protein_coding	Prpf6	intron	ENSMUSG00000002455	NonProperStrand	11	chr2	181329988	181330078	protein_coding	Samd10	utr3	ENSMUSG00000038605	ProperStrand	1	1	-inf
chr13	9834304	9834481	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr17	39847348	39848086	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	32	-8.1829
chr3	101066986	101067099	SINE	B1_Mus2	Alu	chr3B1_Mus2101066940	ProperStrand	1	chr9	123461954	123461996	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847445	39847535	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	97799759	97799859	protein_coding-noncoding	Plxdc1	utr3	ENSMUSG00000017417	NonProperStrand	3	1	-4.3512
chr3	22706806	22706906	LINE	L1_Mus3	L1	chr3L1_Mus322706618	ProperStrand	1	chr3	22707112	22707202	LTR	RLTR1B	ERV1	chr3RLTR1B22707026	NonProperStrand	1	1	-inf
chr11	106501242	106501274	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	28	chr17	39843534	39843573	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-3.9511
chr4	43492784	43492852	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr18	75106572	75106656	protein_coding	Lipg	intron	ENSMUSG00000053846	NonProperStrand	17	1	-9.6392
chr5	121959730	121959818	protein_coding	Tmem116	intron	ENSMUSG00000029452	NonProperStrand	41	chr5	121989689	121989742	protein_coding	Mapkapk5	intron	ENSMUSG00000029454	ProperStrand	29	2	-21.0553
chr17	39847877	39847944	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	78821074	78821148	LTR	RMER15	ERVL	chr8RMER1578820801	NonProperStrand	1	1	-inf
chr17	39846411	39846918	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	5	-3.8940
chr17	39846622	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	54728809	54728833	SINE	B2_Mm1t	B2	chr3B2_Mm1t54728695	ProperStrand	1	1	-inf
chr1	38037226	38037294	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int38036231	NonProperStrand	1	chr4	133664004	133664037	protein_coding	Ubxn11	intron	ENSMUSG00000012126	NonProperStrand	37	1	-inf
chr6	115803164	115803288	protein_coding	Mbd4	utr5	ENSMUSG00000030322	NonProperStrand	23	chrX	56787246	56787281	protein_coding	Fgf13	intron	ENSMUSG00000031137	NonProperStrand	55	1	-14.1409
chr1	55007667	55012151	LINE	L1Md_F2	L1	chr1L1Md_F255007595	NonProperStrand	1	chr1	55012199	55014499	LTR	MLT1A0	MaLR	chr1MLT1A055012106	NonProperStrand	8	1	-inf
chr1	118835219	118835319	LINE	Lx2	L1	chr1Lx2118835042	NonProperStrand	3	chr1	118835323	118835413	LTR	RLTR18	ERVK	chr1RLTR18118835302	NonProperStrand	3	3	-inf
chr7	103031573	103031673	LINE	L1_Mus1	L1	chr7L1_Mus1103031191	NonProperStrand	1	chr7	103031866	103031956	LTR	MTC	MaLR	chr7MTC103031824	ProperStrand	1	1	-inf
chr2	68962920	68962991	LINE	L1MC4	L1	chr2L1MC468962884	ProperStrand	1	chr17	39846920	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	95032321	95032400	LINE	Lx3C	L1	chr11Lx3C95031678	ProperStrand	1	chr12	110582665	110582702	LTR	RLTR12A	ERVK	chr12RLTR12A110582557	ProperStrand	1	1	-inf
chr12	71837494	71837539	LINE	L1M2	L1	chr12L1M271837347	ProperStrand	5	chrX	134757788	134758138	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	3	-inf
chr2	5871142	5871185	SINE	B1_Mus2	Alu	chr2B1_Mus25871043	NonProperStrand	1	chr2	5874265	5874298	protein_coding	Upf2	intron	ENSMUSG00000043241	NonProperStrand	54	1	-inf
chr6	3201477	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr3	89749121	89749151	protein_coding	Atp8b2	intron	ENSMUSG00000060671	NonProperStrand	17	1	-5.2844
chr13	97190558	97190611	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr15	81903497	81903591	protein_coding	Mei1	intron	ENSMUSG00000068117	ProperStrand	63	1	-5.0276
chr17	39848312	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	76106124	76106165	protein_coding	Spatc1	intron	ENSMUSG00000049653	NonProperStrand	21	1	-3.2798
chr5	146261163	146261231	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	22165909	22165973	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-4.0304
chr3	103047164	103049705	LTR	RMER17C	ERVK	chr3RMER17C103049549	NonProperStrand	1	chr9	64176659	64176721	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-inf
chr15	8434699	8434799	LTR	ORR1C2	MaLR	chr15ORR1C28434529	NonProperStrand	1	chr1	84788428	84788518	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	1	-inf
chr17	39848738	39848772	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chrX	73824297	73824406	LINE	Lx	L1	chrXLx73824068	ProperStrand	7	1	-5.7189
chr1	134787400	134787442	protein_coding	Lrrn2	intron	ENSMUSG00000026443	NonProperStrand	31	chr4	59524420	59549197	protein_coding	Rod1	intron	ENSMUSG00000028382	ProperStrand	21	1	-15.4918
chr8	84976698	84976787	LINE	Lx9	L1	chr8Lx984976717	ProperStrand	2	chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr6	149068573	149068645	LTR	MER90a	ERV1	chr6MER90a149068577	NonProperStrand	1	chr11	51851187	51851264	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	1	-inf
chr5	110221651	110221794	LINE	L1Md_F3	L1	chr5L1Md_F3110220917	ProperStrand	1	chr13	98249108	98249126	lincRNA	Gm11019	intron	ENSMUSG00000078952	ProperStrand	1	1	-inf
chr10	40258649	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr10	61682939	61683056	protein_coding	Tspan15	intron	ENSMUSG00000037031	NonProperStrand	51	1	-5.6746
chr4	115565139	115565229	antisense	6430628N08Rik	.	ENSMUSG00000034185	ProperStrand	1	chr4	115602554	115602654	protein_coding	Dmbx1	intron	ENSMUSG00000028707	NonProperStrand	1	1	-inf
chr13	65067944	65069682	LTR	RLTR30	ERV1	chr13RLTR3065067888	ProperStrand	4	chr13	65069687	65072040	SINE	ID4_	ID	chr13ID4_65069666	ProperStrand	4	4	-inf
chr18	79593050	79593140	LTR	MYSERV6-int	ERVK	chr18MYSERV6-int79590833	NonProperStrand	1	chr18	79592421	79592521	LTR	MYSERV6-int	ERVK	chr18MYSERV6-int79590833	ProperStrand	2	1	-inf
chr8	78515032	78515122	LINE	L1_Mur1	L1	chr8L1_Mur178513512	NonProperStrand	1	chr8	78515159	78515259	LTR	ORR1B2	MaLR	chr8ORR1B278515119	NonProperStrand	1	1	-inf
chr5	146303981	146304055	LTR	MERVL-int	ERVL	chr5MERVL-int146300781	ProperStrand	14	chr13	44869603	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.3798
chr10	38148552	38148652	LTR	MTC-int	MaLR	chr10MTC-int38148401	ProperStrand	1	chr10	38148710	38148800	LTR	RLTR19-int	ERVK	chr10RLTR19-int38148674	ProperStrand	1	1	-inf
chr12	99645574	99645665	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr2	92320326	92320386	SINE	ID_B1	B4	chr2ID_B192320313	NonProperStrand	1	1	-inf
chr16	17926086	17926269	protein_coding	Slc25a1	intron	ENSMUSG00000003528	ProperStrand	7	chr9	123462147	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr3	157013875	157013965	LTR	MLT1F-int	MaLR	chr3MLT1F-int157013887	ProperStrand	1	chr3	141285358	141285458	protein_coding	Unc5c	intron	ENSMUSG00000059921	ProperStrand	4	1	-inf
chr5	121652069	121656078	protein_coding-noncoding	Rpl6	utr5	ENSMUSG00000029614	NonProperStrand	1	chr5	121614173	121618774	protein_coding	Ptpn11	intron	ENSMUSG00000043733	ProperStrand	45	1	-inf
chr17	39847165	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	89284890	89284985	protein_coding	Plxna1	exon	ENSMUSG00000030084	ProperStrand	9	1	-3.1539
chr11	19968145	19968198	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	chr5	3475964	3476016	protein_coding	Cdk6	intron	ENSMUSG00000040274	ProperStrand	138	1	-8.0767
chr5	130300010	130325669	protein_coding	Sumf2	intron	ENSMUSG00000025538	ProperStrand	10	chr5	130299910	130300000	protein_coding	Cct6a	intron	ENSMUSG00000029447	ProperStrand	24	3	-inf
chr11	101604947	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.4116
chr11	75563479	75563575	protein_coding	Ywhae	intron	ENSMUSG00000020849	ProperStrand	38	chr1	133108245	133108273	protein_coding	Rassf5	intron	ENSMUSG00000026430	NonProperStrand	55	2	-20.4066
chr14	12213711	12213801	LINE	L1MB7	L1	chr14L1MB712213651	ProperStrand	1	chr14	12213804	12215285	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n12215175	ProperStrand	1	1	-inf
chr4	53860701	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr8	70913214	70913297	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	NonProperStrand	45	1	-10.0060
chr5	139433449	139433549	DNA	MER3	MER1_type	chr5MER3139433449	NonProperStrand	1	chr5	139433560	139433650	DNA	MER3	MER1_type	chr5MER3139433548	ProperStrand	3	1	-inf
chr12	112799630	112799690	Simple_repeat	(CTGTG)n	Simple_repeat	chr12(CTGTG)n112799591	NonProperStrand	1	chr8	111241148	111241244	protein_coding	Zfhx3	intron	ENSMUSG00000038872	NonProperStrand	108	1	-inf
chr4	147702477	147702524	DNA	MER117	MER1_type	chr4MER117147702456	ProperStrand	2	chr17	39846498	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	35154975	35155380	protein_coding	D17H6S56E-3	intron	ENSMUSG00000007030	NonProperStrand	151	chr2	121441721	121441811	protein_coding	Frmd5	intron	ENSMUSG00000027238	ProperStrand	82	1	-9.5430
chrX	151881208	151881255	LINE	L1Md_F2	L1	chrXL1Md_F2151879562	ProperStrand	12	chr9	111252889	111252988	protein_coding	Trank1	intron	ENSMUSG00000062296	NonProperStrand	18	1	-17.8341
chr2	127598207	127598235	protein_coding	Nphp1	intron	ENSMUSG00000027378	NonProperStrand	23	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-14.0008
chr11	118208037	118208126	protein_coding	Timp2	intron	ENSMUSG00000017466	ProperStrand	43	chr16	27449840	27449886	protein_coding	Ccdc50	utr3	ENSMUSG00000038127	ProperStrand	26	1	-14.3942
chr9	21140975	21141084	LTR	RMER19A	ERVK	chr9RMER19A21140913	ProperStrand	7	chr16	97170655	97170671	protein_coding	Dscam	intron	ENSMUSG00000050272	NonProperStrand	29	1	-17.7846
chr6	72432378	72432418	LTR	RLTR19-int	ERVK	chr6RLTR19-int72432356	ProperStrand	2	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-17.3747
chr17	39847836	39847866	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	8581627	8581667	SINE	MIRc	MIR	chr11MIRc8581630	NonProperStrand	4	1	-3.7035
chr10	128558907	128559097	LTR	RMER19C	ERVK	chr10RMER19C128558539	NonProperStrand	6	chr10	128559108	128559312	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n128559158	NonProperStrand	3	1	-inf
chr12	80229958	80230058	LTR	MERVL-int	ERVL	chr12MERVL-int80224802	ProperStrand	30	chr12	80230051	80230141	LTR	MT2_Mm	ERVL	chr12MT2_Mm80230070	ProperStrand	5	2	-inf
chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	111379574	111379596	LTR	RLTR13D2	ERVK	chr3RLTR13D2111378824	NonProperStrand	1	1	-inf
chr19	29908906	29909006	SINE	B4A	B4	chr19B4A29908888	NonProperStrand	1	chr19	29908501	29908591	SINE	ID_B1	B4	chr19ID_B129908496	NonProperStrand	1	1	-inf
chr13	9834325	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr6	92139053	92139154	protein_coding	Zfyve20	utr3	ENSMUSG00000014550	NonProperStrand	16	1	-11.7917
chr13	90664058	90664158	LINE	L1ME1	L1	chr13L1ME190664085	NonProperStrand	1	chr6	102041171	102041261	LINE	Lx3C	L1	chr6Lx3C102040530	ProperStrand	7	1	-inf
chr4	151739646	151739735	protein_coding	Chd5	intron	ENSMUSG00000005045	NonProperStrand	82	chr4	132270144	132270213	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-10.1953
chr8	3946606	3946706	protein_coding	Cd209c	utr5	ENSMUSG00000040165	ProperStrand	2	chr19	11777544	11777634	protein_coding	Gm97	intron	ENSMUSG00000055933	NonProperStrand	8	1	-23.4058
chr13	97477642	97477706	LTR	RLTR10-int	ERVK	chr13RLTR10-int97477018	NonProperStrand	5	chrX	106202965	106203019	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	2	-20.3004
chr17	4082229	4082335	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-7.5957
chr5	21375897	21375913	LINE	L1Md_F2	L1	chr5L1Md_F221375138	ProperStrand	2	chr17	39847863	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr2	115615278	115615368	LTR	RMER19B	ERVK	chr2RMER19B115615220	ProperStrand	1	chr2	115615432	115615532	SINE	B2_Mm2	B2	chr2B2_Mm2115615391	ProperStrand	1	1	-inf
chr2	59295475	59295602	LTR	ORR1B1	MaLR	chr2ORR1B159295294	ProperStrand	1	chr17	8385965	8385981	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-inf
chr11	104775454	104775492	LTR	ORR1A3	MaLR	chr11ORR1A3104775267	ProperStrand	1	chr17	39848254	39848346	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr6	65858020	65858052	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	chr6	65832764	65832877	pseudogene	Gm20445	.	ENSMUSG00000092394	ProperStrand	1	1	-inf
chr10	121625855	121625930	LINE	L1_Mus3	L1	chr10L1_Mus3121625850	NonProperStrand	3	chr17	39847623	39847688	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr5	63961597	63961687	LTR	MTE2a	MaLR	chr5MTE2a63961582	NonProperStrand	3	chr5	63961498	63961598	LTR	RMER19B	ERVK	chr5RMER19B63960791	ProperStrand	4	3	-inf
chr17	52990851	52990885	protein_coding	Kcnh8	intron	ENSMUSG00000035580	ProperStrand	6	chr10	80413029	80413050	protein_coding	Gng7	utr3	ENSMUSG00000048240	ProperStrand	79	1	-16.2861
chr19	42025340	42025430	protein_coding-noncoding	Mms19	utr3	ENSMUSG00000025159	ProperStrand	1	chr19	42025026	42025126	protein_coding	Mms19	intron	ENSMUSG00000025159	ProperStrand	5	1	-inf
chr7	143221029	143221065	LTR	MTEa	MaLR	chr7MTEa143220980	ProperStrand	1	chr3	145123077	145123141	protein_coding	Col24a1	intron	ENSMUSG00000028197	ProperStrand	29	1	-inf
chr14	8286679	8286768	LTR	MTD	MaLR	chr14MTD8286534	NonProperStrand	1	chr15	75086708	75086808	LTR	MTA_Mm-int	MaLR	chr15MTA_Mm-int75086297	ProperStrand	1	1	-inf
chr3	153912178	153912205	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr3	121204541	121204558	protein_coding	Slc44a3	intron	ENSMUSG00000039865	ProperStrand	4	1	-14.5438
chr17	39846726	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	136329741	136329791	LTR	RMER16	ERVK	chr6RMER16136329640	ProperStrand	1	1	-inf
chr11	21875217	21875317	LINE	L1M3	L1	chr11L1M321875213	ProperStrand	2	chr11	21875130	21875220	SINE	B4A	B4	chr11B4A21874942	ProperStrand	3	2	-inf
chr13	51151356	51151410	LTR	MERVL-int	ERVL	chr13MERVL-int51151105	NonProperStrand	10	chr13	51150809	51150874	LTR	MT2_Mm	ERVL	chr13MT2_Mm51150612	NonProperStrand	9	1	-20.1232
chr11	80056522	80056569	protein_coding	Rhot1	intron	ENSMUSG00000017686	NonProperStrand	25	chr5	118708919	118708978	protein_coding	2410131K14Rik	intron	ENSMUSG00000032840	ProperStrand	127	1	-12.2893
chr17	39846650	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	86390644	86390662	SINE	MIR	MIR	chr7MIR86390610	ProperStrand	1	1	-inf
chr17	28044312	28044375	protein_coding	Taf11	intron	ENSMUSG00000024218	NonProperStrand	26	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.1280
chr9	12476339	12476429	LINE	L1_Mus4	L1	chr9L1_Mus412476267	ProperStrand	1	chr9	12476166	12476266	LTR	RLTR33	ERVK	chr9RLTR3312476090	NonProperStrand	1	1	-inf
chr9	80139341	80139441	protein_coding	Myo6	intron	ENSMUSG00000033577	ProperStrand	37	chr19	8999539	8999629	protein_coding	B3gat3	intron	ENSMUSG00000071649	ProperStrand	33	2	-inf
chr6	67647396	67647496	LINE	Lx5	L1	chr6Lx567647288	ProperStrand	1	chr6	67647645	67647735	LTR	MTA_Mm	MaLR	chr6MTA_Mm67647620	NonProperStrand	1	1	-inf
chr3	138557481	138557497	protein_coding	Tspan5	intron	ENSMUSG00000028152	NonProperStrand	34	chr17	44793608	44793710	protein_coding	Runx2	intron	ENSMUSG00000039153	NonProperStrand	33	1	-14.3835
chr4	43492951	43493036	SINE	B3	B2	chr4B343492960	NonProperStrand	660	chr14	63462656	63462674	protein_coding	Wdfy2	intron	ENSMUSG00000014547	ProperStrand	28	1	-8.7645
chr18	20720051	20720074	protein_coding	Dsg2	intron	ENSMUSG00000044393	NonProperStrand	42	chr18	20689226	20692401	protein_coding	Dsg3	intron	ENSMUSG00000056632	NonProperStrand	20	1	-14.9764
chrX	12605170	12606294	SINE	B1_Mus2	Alu	chrXB1_Mus212605175	NonProperStrand	1	chr9	123462108	123462162	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	97740848	97740864	LINE	L1Md_F3	L1	chr1L1Md_F397739721	NonProperStrand	2	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr7	12926482	12926683	LINE	L1Md_F	L1	chr7L1Md_F12926473	ProperStrand	6	chr17	39846395	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.1926
chr7	27911184	27911275	antisense	Gm15883	.	ENSMUSG00000086868	ProperStrand	3	chr7	27963673	27963773	protein_coding	Rab4b	utr5	ENSMUSG00000053291	ProperStrand	9	1	-21.6921
chr10	23751471	23751547	LINE	L1VL2	L1	chr10L1VL223751185	ProperStrand	1	chr1	72844762	72844848	LTR	ORR1B2	MaLR	chr1ORR1B272844724	ProperStrand	1	1	-inf
chr1	34651710	34651810	LINE	L1MC	L1	chr1L1MC34651589	NonProperStrand	1	chr1	34651840	34651930	LTR	MT2A	ERVL	chr1MT2A34651821	NonProperStrand	1	1	-inf
chr3	71057926	71058026	LINE	L1_Mur3	L1	chr3L1_Mur371057820	NonProperStrand	1	chr3	71058333	71058423	LINE	L1_Mur3	L1	chr3L1_Mur371058214	NonProperStrand	1	1	-inf
chr2	153397576	153397668	LINE	Lx8	L1	chr2Lx8153397566	NonProperStrand	2	chr5	146261020	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-12.4657
chr10	117827397	117827461	LINE	Lx6	L1	chr10Lx6117827312	NonProperStrand	1	chr17	39848646	39848717	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chr14	87125543	87125638	protein_coding	Diap3	intron	ENSMUSG00000022021	ProperStrand	76	chr2	58979212	58979229	protein_coding	Ccdc148	intron	ENSMUSG00000036641	NonProperStrand	16	1	-14.2379
chr9	22008328	22010211	LINE	L1M2	L1	chr9L1M222010080	NonProperStrand	8	chr9	22006586	22008262	SINE	RSINE1	B4	chr9RSINE122006584	NonProperStrand	5	5	-inf
chr13	99430433	99430456	LTR	RLTR43A	ERVK	chr13RLTR43A99430389	ProperStrand	2	chr17	12919624	12919722	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	57	2	-inf
chr3	86782495	86782526	LTR	ORR1C1	MaLR	chr3ORR1C186782477	ProperStrand	2	chr3	89335907	89335987	protein_coding	Kcnn3	intron	ENSMUSG00000000794	NonProperStrand	62	2	-inf
chr17	33930557	33930600	LINE	Lx8	L1	chr17Lx833930476	NonProperStrand	1	chr17	33931331	33931386	LTR	ORR1B1-int	MaLR	chr17ORR1B1-int33931329	ProperStrand	2	1	-inf
chr11	107054884	107054902	LINE	L1MB3	L1	chr11L1MB3107054856	ProperStrand	1	chr17	39846352	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	72994531	72994621	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	9	chr5	115253987	115254087	protein_coding	Ankrd13a	intron	ENSMUSG00000041870	ProperStrand	3	1	-21.0885
chr17	39846652	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	62940196	62940275	LTR	LTR33	ERVL	chr9LTR3362940175	ProperStrand	1	1	-inf
chr12	24888218	24888301	LTR	IAPLTR3-int	ERVK	chr12IAPLTR3-int24888237	ProperStrand	1	chr17	39847277	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr14	54268185	54268214	SINE	B4A	B4	chr14B4A54268164	NonProperStrand	1	chr14	54268130	54268170	Simple_repeat	(TG)n	Simple_repeat	chr14(TG)n54268068	ProperStrand	1	1	-inf
chr17	39847326	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	5414681	5414776	SINE	B3A	B2	chr11B3A5414620	NonProperStrand	1	1	-inf
chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	35333683	35333720	lincRNA	Gm12784	intron	ENSMUSG00000086631	NonProperStrand	3	2	-8.0300
chr11	109011734	109011757	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	9834304	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	1	-3.3260
chr11	86903883	86903983	protein_coding	Prr11	utr3	ENSMUSG00000020493	ProperStrand	11	chr4	100587529	100587619	protein_coding	Cachd1	intron	ENSMUSG00000028532	ProperStrand	12	1	-18.9083
chr10	110944248	110944266	protein_coding	Phlda1	exon	ENSMUSG00000020205	ProperStrand	1	chr4	54966736	54966837	protein_coding	Zfp462	intron	ENSMUSG00000060206	ProperStrand	174	1	-inf
chr11	115622647	115622702	LTR	IAPEz-int	ERVK	chr11IAPEz-int115616565	ProperStrand	3	chr17	39846682	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr14	75849926	75850054	SINE	B3	B2	chr14B375849860	ProperStrand	6	chr13	54190149	54190167	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-17.2495
chr14	54567680	54567780	LINE	L1Md_T	L1	chr14L1Md_T54567353	NonProperStrand	3	chr5	122977642	122977732	LINE	Lx4A	L1	chr5Lx4A122977654	NonProperStrand	1	1	-inf
chr17	39843751	39843824	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr5	122802825	122802881	protein_coding	Rad9b	intron	ENSMUSG00000038569	ProperStrand	44	1	-3.5443
chr13	29455036	29455106	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr7	118736272	118736293	protein_coding	Galntl4	intron	ENSMUSG00000038296	NonProperStrand	80	1	-7.3759
chr6	120286439	120286563	protein_coding	Ccdc77	intron	ENSMUSG00000030177	ProperStrand	62	chr8	125550148	125550166	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-6.8675
chr11	96081142	96081164	SINE	B1_Mm	Alu	chr11B1_Mm96081122	ProperStrand	1	chr9	123461954	123462000	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	67339630	67339648	LTR	MMETn-int	ERVK	chr13MMETn-int67335160	ProperStrand	1	chr16	13945757	13945852	protein_coding	Mpv17l	intron	ENSMUSG00000022679	ProperStrand	42	1	-inf
chr12	44362264	44362381	LINE	L1_Mus4	L1	chr12L1_Mus444362231	ProperStrand	2	chr17	39847126	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-inf
chr7	19558502	19558594	SINE	ID4	ID	chr7ID419558518	NonProperStrand	2	chr9	123462122	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847659	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	73826352	73826369	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n73826340	ProperStrand	4	1	-3.7035
chr2	122028882	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	chr17	29038513	29040783	protein_coding	4930539E08Rik	intron	ENSMUSG00000048905	NonProperStrand	52	1	-13.1811
chr15	100644863	100644953	protein_coding-noncoding	Slc4a8	utr5	ENSMUSG00000023032	ProperStrand	4	chr15	100644953	100645053	protein_coding	Slc4a8	intron	ENSMUSG00000023032	ProperStrand	6	4	-inf
chr18	38393514	38393604	SINE	B1_Mur2	Alu	chr18B1_Mur238393443	ProperStrand	1	chr18	38393905	38394005	SINE	B1_Mus2	Alu	chr18B1_Mus238393908	NonProperStrand	1	1	-inf
chr10	59612111	59612201	SINE	B2_Mm2	B2	chr10B2_Mm259612135	ProperStrand	1	chr10	59612358	59612458	SINE	ID_B1	B4	chr10ID_B159612347	ProperStrand	1	1	-inf
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	94134957	94135044	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n94134936	NonProperStrand	1	1	-inf
chr13	97190576	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr19	8972905	8976575	protein_coding	Ganab	intron	ENSMUSG00000071650	ProperStrand	138	2	-6.0156
chr10	17967215	17967305	SINE	B1_Mur2	Alu	chr10B1_Mur217967219	NonProperStrand	1	chr10	17967052	17967152	SINE	B3A	B2	chr10B3A17967029	ProperStrand	1	1	-inf
chr6	67272936	67277828	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr9	64177981	64178007	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-6.5010
chr13	44869570	44869639	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-4.1723
chr4	5317265	5317365	LINE	L1Md_F2	L1	chr4L1Md_F25315855	NonProperStrand	1	chr4	5318281	5318371	LINE	L1Md_F2	L1	chr4L1Md_F25315855	ProperStrand	1	1	-inf
chr2	146365735	146365825	LINE	L1_Mus1	L1	chr2L1_Mus1146365726	NonProperStrand	1	chr2	146365593	146365693	SINE	B1F2	Alu	chr2B1F2146365573	ProperStrand	1	1	-inf
chr17	39847345	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	165462228	165462340	LTR	MTE2a	MaLR	chr1MTE2a165462185	NonProperStrand	1	1	-inf
chr13	65777954	65778044	LINE	L1_Mur3	L1	chr13L1_Mur365776670	NonProperStrand	3	chr6	105320524	105320624	SINE	MIRb	MIR	chr6MIRb105320435	NonProperStrand	3	3	-inf
chr6	28512854	28512955	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr17	74623026	74623057	protein_coding	Memo1	intron	ENSMUSG00000058704	NonProperStrand	64	1	-6.4054
chr8	71470331	71470431	LINE	L1_Mus3	L1	chr8L1_Mus371469038	ProperStrand	1	chr17	39846586	39846676	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	27469914	27470011	protein_coding	Arf4	intron	ENSMUSG00000021877	ProperStrand	19	chr19	4830370	4830415	protein_coding	Ccs	intron	ENSMUSG00000034108	ProperStrand	18	1	-16.7772
chr10	77995283	77996323	LINE	L1_Mus1	L1	chr10L1_Mus177994833	NonProperStrand	17	chr10	77993432	77995265	LINE	Lx4B	L1	chr10Lx4B77992672	ProperStrand	21	8	-20.1353
chr14	11583452	11583531	antisense	Gm16542	.	ENSMUSG00000089833	ProperStrand	103	chr12	110695272	110695314	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-8.1141
chr17	39848099	39848300	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	117709713	117709731	LTR	ORR1E	MaLR	chr9ORR1E117709582	NonProperStrand	6	2	-9.7008
chr4	129215268	129215286	protein_coding	Hdac1	intron	ENSMUSG00000028800	ProperStrand	3	chr2	5379310	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr9	64175710	64176203	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.5873
chr8	84685619	84685719	LINE	L1_Mur1	L1	chr8L1_Mur184685259	ProperStrand	1	chr2	71744665	71744755	LTR	RLTR10B2	ERVK	chr2RLTR10B271744375	ProperStrand	1	1	-inf
chr5	31047288	31047306	protein_coding	Dpysl5	intron	ENSMUSG00000029168	NonProperStrand	14	chr5	108596882	108597870	protein_coding	Ccdc18	intron	ENSMUSG00000056531	ProperStrand	16	1	-17.6629
chr6	3201074	3201512	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	101442430	101443516	protein_coding	Nbr1	utr3	ENSMUSG00000017119	ProperStrand	27	1	-4.3779
chr11	120346479	120346669	protein_coding-noncoding	Mrpl12	utr5	ENSMUSG00000039640	NonProperStrand	20	chr13	55569356	55569415	protein_coding	Prr7	intron	ENSMUSG00000034686	NonProperStrand	61	2	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr3	37693506	37693532	LTR	MER110-int	ERV1	chr3MER110-int37693469	NonProperStrand	1	1	-inf
chr4	123374260	123374350	LINE	L1M5	L1	chr4L1M5123374259	ProperStrand	4	chr4	123374148	123374248	SINE	B2_Mm2	B2	chr4B2_Mm2123374079	ProperStrand	1	1	-inf
chr3	67612606	67612622	LINE	Lx7	L1	chr3Lx767612583	ProperStrand	3	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr11	29025034	29025134	LTR	IAPEz-int	ERVK	chr11IAPEz-int29024893	ProperStrand	1	chr11	29024815	29024905	LTR	IAPLTR1_Mm	ERVK	chr11IAPLTR1_Mm29024556	ProperStrand	1	1	-inf
chr11	109011809	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	46675018	46675084	protein_coding	Cul9	intron	ENSMUSG00000040327	ProperStrand	54	1	-6.3076
chr6	11636336	11636426	LINE	L1Md_A	L1	chr6L1Md_A11635471	ProperStrand	1	chr6	11636568	11636668	LTR	ORR1B2-int	MaLR	chr6ORR1B2-int11636473	ProperStrand	1	1	-inf
chr14	36025655	36025755	protein_coding	Grid1	intron	ENSMUSG00000041078	ProperStrand	16	chr13	67706773	67706863	protein_coding	AA987161	intron	ENSMUSG00000058093	ProperStrand	5	1	-inf
chr13	21193802	21193892	LTR	MMERGLN-int	ERV1	chr13MMERGLN-int21193120	ProperStrand	3	chr4	59540985	59541085	protein_coding	Rod1	intron	ENSMUSG00000028382	ProperStrand	21	1	-19.5588
chr11	109011739	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	57975972	57976059	protein_coding	Wdyhv1	intron	ENSMUSG00000022359	NonProperStrand	10	1	-9.7335
chr12	111293796	111293915	LINE	L1MEc	L1	chr12L1MEc111293817	NonProperStrand	1	chr17	39847265	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr1	82720448	82720465	lincRNA	C430014B12Rik	intron	ENSMUSG00000085879	NonProperStrand	1	chr4	140704690	140704816	protein_coding	Fbxo42	intron	ENSMUSG00000028920	ProperStrand	227	1	-inf
chr9	46060492	46060592	SINE	B1_Mm	Alu	chr9B1_Mm46060483	NonProperStrand	2	chr9	46060399	46060489	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n46060418	ProperStrand	2	2	-inf
chr9	123461957	123462039	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	71250983	71258152	protein_coding	Hat1	intron	ENSMUSG00000027018	ProperStrand	14	1	-3.7266
chr5	107212518	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr16	38137865	38137993	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	96	1	-11.3275
chr17	39846749	39846802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	16951462	16951505	protein_coding	Plek	intron	ENSMUSG00000020120	NonProperStrand	4	1	-3.6552
chr6	92928869	92928918	lincRNA	9530026P05Rik	intron	ENSMUSG00000087573	NonProperStrand	18	chr10	41723933	41728638	protein_coding	Armc2	intron	ENSMUSG00000071324	ProperStrand	32	1	-15.7301
chr14	97202656	97202746	LINE	L1Md_F3	L1	chr14L1Md_F397201777	ProperStrand	1	chr14	97202787	97202887	SINE	B3A	B2	chr14B3A97202810	NonProperStrand	1	1	-inf
chr17	39845220	39845310	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr13	97807766	97807831	LTR	MERVL-int	ERVL	chr13MERVL-int97807330	NonProperStrand	5	1	-7.0883
chr12	59707165	59707265	LINE	L1Md_T	L1	chr12L1Md_T59702722	ProperStrand	1	chr12	60099359	60099449	protein_coding	Sec23a	intron	ENSMUSG00000020986	ProperStrand	2	1	-inf
chrX	103472684	103472769	LINE	L1Md_F2	L1	chrXL1Md_F2103469145	NonProperStrand	25	chr2	26463549	26463624	protein_coding	Gm20532	intron	ENSMUSG00000092356	ProperStrand	19	1	-16.1262
chr15	50866455	50866545	LINE	L1Md_A	L1	chr15L1Md_A50862368	ProperStrand	8	chr6	81961650	81961750	LTR	MTEa	MaLR	chr6MTEa81961651	NonProperStrand	2	2	-inf
chr10	62840207	62840275	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr11	87444483	87444557	protein_coding	Hsf5	intron	ENSMUSG00000070345	NonProperStrand	4	1	-15.0365
chrX	75543629	75543719	LINE	L1Md_F2	L1	chrXL1Md_F275542706	ProperStrand	2	chr17	39847512	39847562	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr19	21857158	21857259	protein_coding	Tmem2	intron	ENSMUSG00000024754	ProperStrand	11	chr4	56805904	56805920	protein_coding	Ikbkap	intron	ENSMUSG00000028431	ProperStrand	109	1	-14.2886
chr7	97183336	97183426	SINE	B1_Mus1	Alu	chr7B1_Mus197183335	NonProperStrand	1	chr7	97183159	97183259	SINE	B2_Mm2	B2	chr7B2_Mm297183101	ProperStrand	1	1	-inf
chr13	16197595	16197685	LINE	Lx8	L1	chr13Lx816197466	NonProperStrand	1	chr13	16197873	16197973	LINE	Lx8	L1	chr13Lx816197780	NonProperStrand	1	1	-inf
chr5	146261045	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	48470397	48470488	protein_coding	Zbtb16	intron	ENSMUSG00000066687	ProperStrand	16	1	-7.6967
chr7	16336819	16359121	LINE	Lx2B	L1	chr7Lx2B16355905	NonProperStrand	7	chr16	15629304	15629355	protein_coding	Mcm4	intron	ENSMUSG00000022673	ProperStrand	19	1	-18.4879
chr17	39846807	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	103070238	103070299	LTR	RLTR45	ERVK	chr3RLTR45103070022	ProperStrand	1	1	-inf
chr11	95005520	95005568	protein_coding-noncoding	Dlx4	utr3	ENSMUSG00000020871	NonProperStrand	1	chr11	95004569	95004656	protein_coding	Dlx4	intron	ENSMUSG00000020871	NonProperStrand	2	1	-inf
chr9	21723721	21731747	SINE	B2_Mm2	B2	chr9B2_Mm221723696	ProperStrand	2	chr9	21733679	21733712	protein_coding	Ccdc159	intron	ENSMUSG00000006241	ProperStrand	32	2	-inf
chr5	31187648	31187748	LTR	ORR1A2	MaLR	chr5ORR1A231187430	NonProperStrand	3	chr5	31187761	31187964	SINE	RSINE1	B4	chr5RSINE131187808	ProperStrand	3	3	-inf
chr2	120546038	120546083	protein_coding	Cdan1	intron	ENSMUSG00000027284	ProperStrand	17	chr7	140861420	140861475	protein_coding	2700050L05Rik	intron	ENSMUSG00000039990	ProperStrand	18	1	-17.0170
chr13	96638914	96638946	protein_coding	Iqgap2	intron	ENSMUSG00000021676	NonProperStrand	66	chr16	29586324	29587013	protein_coding	Opa1	intron	ENSMUSG00000038084	ProperStrand	37	1	-12.8078
chr10	79721663	79722039	protein_coding-noncoding	Gamt	utr3	ENSMUSG00000020150	NonProperStrand	3	chr10	79722077	79722679	protein_coding	Gamt	intron	ENSMUSG00000020150	NonProperStrand	7	2	-inf
chr7	131559257	131559357	LINE	Lx7	L1	chr7Lx7131559113	NonProperStrand	1	chr7	131559501	131559591	LINE	Lx7	L1	chr7Lx7131559341	NonProperStrand	1	1	-inf
chr16	14419972	14420072	protein_coding-noncoding	Abcc1	utr5	ENSMUSG00000023088	ProperStrand	5	chr16	14419788	14419878	protein_coding	Abcc1	exon	ENSMUSG00000023088	ProperStrand	122	2	-20.3717
chr5	23561777	23561827	LTR	MTD	MaLR	chr5MTD23561628	NonProperStrand	1	chr5	23561827	23561925	SINE	B3	B2	chr5B323561817	ProperStrand	1	1	-inf
chr1	127477701	127477728	protein_coding	Slc35f5	intron	ENSMUSG00000026342	ProperStrand	10	chr8	123954289	123954306	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-10.5797
chr11	69669715	69669780	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr11	43690277	43690331	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	1	-8.9190
chr17	70852060	70852086	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-3.1564
chr11	87344966	87344985	protein_coding	Tex14	intron	ENSMUSG00000010342	ProperStrand	45	chr7	97716450	97716531	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-10.1675
chr17	74696346	74696394	SINE	B1_Mus2	Alu	chr17B1_Mus274696321	NonProperStrand	1	chr19	5797395	5797436	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr4	46127901	46127940	protein_coding	Tstd2	utr3	ENSMUSG00000035495	ProperStrand	11	chr13	37976585	37976614	protein_coding	Rreb1	intron	ENSMUSG00000039087	NonProperStrand	39	1	-16.3738
chr2	154866896	154867007	protein_coding	a	intron	ENSMUSG00000027596	ProperStrand	61	chr13	97190541	97190571	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.0902
chr17	12703505	12704300	SINE	B1F2	Alu	chr17B1F212703453	NonProperStrand	1	chr17	12690133	12690223	protein_coding	Slc22a3	intron	ENSMUSG00000023828	ProperStrand	39	1	-inf
chr5	144147680	144148334	protein_coding	Grid2ip	intron	ENSMUSG00000010825	ProperStrand	61	chr1	125393908	125393928	protein_coding	Dpp10	intron	ENSMUSG00000036815	ProperStrand	52	1	-12.2777
chr4	132270078	132270150	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr12	109649618	109649666	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-6.6063
chr10	12720039	12720842	LINE	L1Md_T	L1	chr10L1Md_T12717255	ProperStrand	1	chr10	12714302	12720045	LTR	ORR1A4	MaLR	chr10ORR1A412714148	NonProperStrand	3	1	-inf
chr2	160724175	160724252	protein_coding	Lpin3	intron	ENSMUSG00000027412	ProperStrand	12	chr9	40803582	40803655	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-10.7099
chr1	151369900	151370000	LINE	Lx6	L1	chr1Lx6151369827	NonProperStrand	2	chr1	151370000	151370090	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n151369990	NonProperStrand	2	2	-inf
chr15	19296862	19296962	LTR	RMER13B	ERVK	chr15RMER13B19296759	NonProperStrand	1	chr15	19297021	19297111	LTR	RMER13B	ERVK	chr15RMER13B19296990	NonProperStrand	1	1	-inf
chr3	151388140	151388240	LINE	L1_Mur3	L1	chr3L1_Mur3151388028	ProperStrand	1	chr3	151388568	151388658	LINE	L1_Mur3	L1	chr3L1_Mur3151388527	ProperStrand	1	1	-inf
chr5	104059684	104061675	LTR	MT2_Mm	ERVL	chr5MT2_Mm104059613	NonProperStrand	2	chr5	104058139	104059646	protein_coding	Slc10a6	exon	ENSMUSG00000029321	NonProperStrand	4	2	-inf
chr5	146261020	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	62752235	62752311	protein_coding	Nsun3	intron	ENSMUSG00000050312	NonProperStrand	6	1	-9.7631
chr13	79933736	79933836	LINE	L1_Mur1	L1	chr13L1_Mur179932811	ProperStrand	1	chr13	79933922	79934012	LINE	Lx2B	L1	chr13Lx2B79933814	NonProperStrand	1	1	-inf
mmu-miR-6238	2	20	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	chr4	44810925	44810981	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-13.1122
chr15	100014832	100014953	protein_coding	Dip2b	intron	ENSMUSG00000023026	ProperStrand	60	chr4	35039162	35039180	protein_coding	Mob3b	intron	ENSMUSG00000073910	ProperStrand	86	1	-11.2986
chr2	4618768	4618858	LINE	L1MEc	L1	chr2L1MEc4618000	NonProperStrand	2	chr2	4619182	4619478	LINE	L1MEc	L1	chr2L1MEc4619160	NonProperStrand	2	2	-inf
chr2	102829380	102829459	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr1	175910066	175910116	protein_coding	Ifi202b	intron	ENSMUSG00000026535	NonProperStrand	32	1	-11.1441
chr18	67573698	67573797	protein_coding	Afg3l2	intron	ENSMUSG00000024527	ProperStrand	21	chr11	73083080	73083104	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-15.3038
chr17	39847160	39847257	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	47753013	47753029	protein_coding	Col17a1	intron	ENSMUSG00000025064	ProperStrand	3	1	-5.4882
mmu-miR-6240	2	20	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	chr16	35981616	35981645	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-11.5008
chrX	73677342	73677432	LINE	L1_Mur2	L1	chrXL1_Mur273677036	ProperStrand	6	chrX	73677442	73678724	LINE	Lx2	L1	chrXLx273678315	NonProperStrand	18	6	-inf
chr12	54935656	54935707	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr6	4946840	4946912	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-7.4235
chr17	39848486	39848524	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr19	11295023	11295071	lincRNA	4930526L06Rik	intron	ENSMUSG00000085490	ProperStrand	7	1	-5.7189
chr4	23689201	23689301	LINE	L1VL2	L1	chr4L1VL223686624	NonProperStrand	1	chr4	23689375	23689465	SINE	B1_Mus1	Alu	chr4B1_Mus123689315	NonProperStrand	1	1	-inf
chr17	39847767	39847817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	17409980	17410084	protein_coding	Snap29	intron	ENSMUSG00000022765	ProperStrand	5	1	-3.2379
chr13	29681925	29681949	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr2	5828151	5828227	protein_coding	Dhtkd1	intron	ENSMUSG00000025815	ProperStrand	28	1	-9.4838
chr17	39845585	39845697	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr3	83766570	83766586	protein_coding	D930015E06Rik	intron	ENSMUSG00000033767	ProperStrand	10	1	-5.6150
chr11	61174905	61174979	protein_coding	Slc47a1	intron	ENSMUSG00000010122	ProperStrand	20	chr9	123462078	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr18	44074412	44080108	LINE	L1_Mus2	L1	chr18L1_Mus244074346	NonProperStrand	1	chr9	123461822	123461948	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	77203910	77204000	LTR	RMER19C	ERVK	chr15RMER19C77203823	NonProperStrand	5	chr15	77203736	77203836	LTR	RodERV21-int	ERV1	chr15RodERV21-int77203354	NonProperStrand	2	2	-inf
chr18	64933139	64933252	LINE	L1MB7	L1	chr18L1MB764932953	NonProperStrand	1	chr17	39846701	39846730	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	166142532	166142630	Simple_repeat	(CATATA)n	Simple_repeat	chr2(CATATA)n166142518	NonProperStrand	1	chr5	114851974	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr10	76379999	76380038	protein_coding	Pcbp3	intron	ENSMUSG00000001120	ProperStrand	179	chr3	19153945	19153974	protein_coding	Pde7a	intron	ENSMUSG00000069094	ProperStrand	17	1	-12.3910
chr11	17221302	17221379	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr9	123461884	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	9	-inf
chr3	36202084	36202184	LINE	L1VL4	L1	chr3L1VL436202106	NonProperStrand	1	chr3	36201885	36201975	LTR	MTA_Mm	MaLR	chr3MTA_Mm36201710	NonProperStrand	1	1	-inf
chr2	31913116	31913134	processed_transcript	Gm16534	.	ENSMUSG00000090157	NonProperStrand	1	chr8	78108186	78108216	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-inf
chr12	108963964	108964054	lincRNA	4930465M20Rik	intron	ENSMUSG00000085641	NonProperStrand	23	chr5	105757419	105757519	protein_coding	Gbp11	exon	ENSMUSG00000092021	NonProperStrand	63	2	-20.8711
chr7	109619166	109619266	LTR	ERVL-B4-int	ERVL	chr7ERVL-B4-int109619056	NonProperStrand	2	chr7	109619315	109619405	LTR	RLTR25A	ERVK	chr7RLTR25A109619310	NonProperStrand	2	2	-inf
chr7	129399007	129399084	SINE	B3A	B2	chr7B3A129398953	NonProperStrand	1	chr7	129399108	129399159	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n129399103	NonProperStrand	1	1	-inf
chr3	75655599	75655641	LINE	L1Md_F2	L1	chr3L1Md_F275655191	ProperStrand	2	chr2	174295087	174295119	protein_coding	Slmo2	intron	ENSMUSG00000016257	ProperStrand	9	1	-inf
chr5	123787717	123787787	antisense	Gm15860	.	ENSMUSG00000087336	NonProperStrand	7	chr17	78935664	78935724	protein_coding	Vit	intron	ENSMUSG00000024076	NonProperStrand	35	1	-17.5090
chr5	23526604	23526675	protein_coding	Fam126a	intron	ENSMUSG00000028995	ProperStrand	48	chr2	5442348	5442429	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.9784
chr1	118682627	118682761	LINE	L1_Mur1	L1	chr1L1_Mur1118682021	ProperStrand	19	chr1	118683873	118683897	Simple_repeat	(TCTCCC)n	Simple_repeat	chr1(TCTCCC)n118683782	ProperStrand	5	1	-19.2702
chr5	140256862	140256897	SINE	B2_Mm2	B2	chr5B2_Mm2140256741	NonProperStrand	1	chr5	140256983	140257028	Satellite	ZP3AR	Satellite	chr5ZP3AR140256942	NonProperStrand	1	1	-inf
chr8	42983284	42983374	LINE	L1Md_T	L1	chr8L1Md_T42981285	NonProperStrand	1	chr7	104033762	104033862	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr14	64691122	64691222	LTR	RMER17C	ERVK	chr14RMER17C64691072	ProperStrand	1	chr14	64690983	64691073	Simple_repeat	(TC)n	Simple_repeat	chr14(TC)n64690898	ProperStrand	1	1	-inf
chr4	88403398	88407203	protein_coding	Gm13283	exon	ENSMUSG00000078642	ProperStrand	8	chr4	88401124	88403330	protein_coding	Gm13271	exon	ENSMUSG00000079860	ProperStrand	7	7	-inf
chr17	39847735	39847825	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	58942391	58942491	LTR	RMER19A	ERVK	chr19RMER19A58942076	NonProperStrand	1	1	-inf
chr13	23739288	23739531	LTR	MTA_Mm	MaLR	chr13MTA_Mm23739238	NonProperStrand	65	chr17	39846453	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	8	-3.3998
chr10	122565879	122565979	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr9	24390483	24390573	protein_coding	Dpy19l2	intron	ENSMUSG00000085576	ProperStrand	89	1	-11.7222
chr2	12373145	12373247	LINE	L1MA6	L1	chr2L1MA612373171	ProperStrand	1	chr2	12371910	12371932	LTR	MTD	MaLR	chr2MTD12371694	ProperStrand	1	1	-inf
chr2	150641155	150654227	protein_coding-noncoding	Pygb	utr5	ENSMUSG00000033059	NonProperStrand	2	chr2	150643809	150654165	protein_coding	Pygb	intron	ENSMUSG00000033059	NonProperStrand	63	2	-inf
chr10	28576981	28577081	protein_coding	Themis	intron	ENSMUSG00000049109	NonProperStrand	4	chr14	93938166	93938256	protein_coding	Pcdh9	intron	ENSMUSG00000055421	ProperStrand	17	1	-21.4578
chr15	85177749	85177786	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr7	139447699	139447726	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-5.4652
chr1	155951027	155951089	LTR	MTD-int	MaLR	chr1MTD-int155950825	NonProperStrand	1	chr10	127710200	127710217	protein_coding	Stat2	intron	ENSMUSG00000040033	ProperStrand	4	1	-inf
chr14	121279166	121279216	LTR	ORR1C2	MaLR	chr14ORR1C2121279024	NonProperStrand	1	chr17	39846388	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847796	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	65303208	65306397	LTR	RMER20A	ERVK	chr7RMER20A65306253	NonProperStrand	1	1	-inf
chr17	39846962	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	50057196	50057266	LTR	ORR1E-int	MaLR	chr5ORR1E-int50056521	ProperStrand	1	1	-inf
chr5	146261283	146261304	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr11	69669682	69669781	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-4.9282
chrX	73966115	73966167	LINE	L1VL1	L1	chrXL1VL173965763	NonProperStrand	46	chrX	73958252	73958315	LINE	L1_Mur2	L1	chrXL1_Mur273958220	NonProperStrand	2	1	-20.3205
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr17	39847182	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	9	-9.9418
chr2	130996837	130996927	antisense	Gm14232	.	ENSMUSG00000087405	ProperStrand	5	chr2	130997116	130997216	protein_coding	Spef1	utr3	ENSMUSG00000027329	NonProperStrand	10	1	-22.6756
chr8	50311553	50311653	LINE	L1_Mus4	L1	chr8L1_Mus450311403	NonProperStrand	1	chr8	50311706	50311796	LINE	L1_Mus4	L1	chr8L1_Mus450311646	NonProperStrand	1	1	-inf
chr3	53169207	53169297	LTR	MuRRS-int	ERV1	chr3MuRRS-int53168080	ProperStrand	1	chr10	63810588	63810688	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-inf
chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr7	4658819	4658846	protein_coding	Brsk1	exon	ENSMUSG00000035390	ProperStrand	1	1	-inf
chr17	39846636	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	85802300	85802319	protein_coding	Adamts1	exon	ENSMUSG00000022893	ProperStrand	3	2	-8.0300
chr17	45570491	45570556	protein_coding	Cdc5l	utr5	ENSMUSG00000023932	ProperStrand	300	chr1	33727161	33727224	protein_coding	1700001G17Rik	exon	ENSMUSG00000044744	ProperStrand	2	1	-16.2685
chr12	31787279	31787379	SINE	B1_Mur1	Alu	chr12B1_Mur131787245	NonProperStrand	2	chr12	31787107	31787197	Simple_repeat	(TC)n	Simple_repeat	chr12(TC)n31787088	ProperStrand	2	2	-inf
chr7	19300337	19300437	LTR	RLTR13A	ERVK	chr7RLTR13A19300184	ProperStrand	1	chr2	104162506	104162596	protein_coding	D430041D05Rik	intron	ENSMUSG00000068373	ProperStrand	7	1	-inf
chr14	117323035	117323135	SINE	B3A	B2	chr14B3A117323035	ProperStrand	1	chr14	120256115	120256205	protein_coding	Hs6st3	intron	ENSMUSG00000053465	NonProperStrand	21	1	-inf
chr11	62397909	62397958	protein_coding	Trpv2	exon	ENSMUSG00000018507	NonProperStrand	22	chr10	61321139	61321198	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-10.2787
chr13	97190554	97190629	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	122123775	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	3	-5.5804
chr17	39846395	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	96246100	96246204	SINE	PB1D7	Alu	chr7PB1D796246128	ProperStrand	2	1	-5.3533
chr18	44196754	44196844	LINE	Lx5	L1	chr18Lx544196713	ProperStrand	1	chr18	44196997	44197097	LINE	Lx5	L1	chr18Lx544196777	ProperStrand	1	1	-inf
chr19	5798670	5798702	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr2	168011157	168011179	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	4	1	-10.0252
chr8	123105049	123105180	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	chr17	30787155	30787174	protein_coding	Dnahc8	intron	ENSMUSG00000033826	NonProperStrand	32	1	-10.7044
chr11	83397792	83397832	lincRNA	E230016K23Rik	intron	ENSMUSG00000051832	ProperStrand	16	chr12	4290005	4290059	protein_coding	Ncoa1	intron	ENSMUSG00000020647	ProperStrand	80	1	-14.1364
chr12	62736817	62736906	protein_coding	Lrfn5	intron	ENSMUSG00000035653	NonProperStrand	8	chr1	85213649	85213749	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	ProperStrand	6	1	-inf
chr12	54734644	54734693	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr11	52918345	52918433	protein_coding	Fstl4	intron	ENSMUSG00000036264	ProperStrand	23	1	-12.2778
chr12	78350923	78351022	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr1	134597680	134599097	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	1	-3.3947
chr14	115044045	115044069	LTR	ORR1E	MaLR	chr14ORR1E115043798	NonProperStrand	1	chr8	117287881	117287962	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-inf
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	122425015	122426213	SINE	B2_Mm2	B2	chr8B2_Mm2122425020	ProperStrand	2	2	-inf
chr9	58231008	58231120	LINE	L1MEf	L1	chr9L1MEf58230883	ProperStrand	12	chr9	58231792	58231828	SINE	B2_Mm2	B2	chr9B2_Mm258231666	NonProperStrand	1	1	-inf
chr8	100828259	100828349	LTR	MTD-int	MaLR	chr8MTD-int100828235	NonProperStrand	1	chr8	100828411	100828511	LTR	MTD	MaLR	chr8MTD100828425	NonProperStrand	1	1	-inf
chr4	43492944	43493025	SINE	B3	B2	chr4B343492960	NonProperStrand	660	chr2	156170421	156170498	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	NonProperStrand	55	1	-7.4078
chr2	167486674	167486774	protein_coding	Gm20431	intron	ENSMUSG00000089739	ProperStrand	22	chr2	167486881	167486971	protein_coding	Tmem189	exon	ENSMUSG00000090213	ProperStrand	4	1	-21.7292
chr15	39011364	39011389	LTR	RLTR12B	ERVK	chr15RLTR12B39011298	NonProperStrand	1	chrX	70364640	70364737	protein_coding	Gm14685	intron	ENSMUSG00000067771	NonProperStrand	1	1	-inf
chr13	90897220	90897310	LTR	RLTR31_Mm	ERVK	chr13RLTR31_Mm90896950	ProperStrand	1	chr13	90897402	90897502	LTR	RLTR31_Mm	ERVK	chr13RLTR31_Mm90897368	ProperStrand	1	1	-inf
chr5	146261163	146261223	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	58383485	58383536	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-3.2764
chr19	5800687	5800761	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	102906391	102906452	protein_coding	Nmt1	intron	ENSMUSG00000020936	NonProperStrand	24	1	-6.2327
chr11	19960064	19960135	LTR	ORR1C2	MaLR	chr11ORR1C219959892	ProperStrand	1	chr11	19961703	19961764	SINE	B1_Mm	Alu	chr11B1_Mm19961637	NonProperStrand	1	1	-inf
chr18	12737378	12737396	protein_coding	Lama3	intron	ENSMUSG00000024421	NonProperStrand	15	chr19	32355166	32355228	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-12.8873
chr3	122211961	122212051	protein_coding	Bcar3	intron	ENSMUSG00000028121	NonProperStrand	10	chr3	89023937	89024037	protein_coding	Mtx1	intron	ENSMUSG00000064068	ProperStrand	1	1	-inf
chr6	3201509	3201556	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr3	130180925	130180941	protein_coding	Col25a1	intron	ENSMUSG00000058897	ProperStrand	31	1	-4.1133
chr13	49574609	49574736	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	chr8	75069889	75069923	protein_coding	Med26	intron	ENSMUSG00000045248	NonProperStrand	147	1	-9.2194
chr1	89143900	89143917	SINE	B1_Mm	Alu	chr1B1_Mm89143813	ProperStrand	3	chr11	51218377	51218470	protein_coding	Col23a1	intron	ENSMUSG00000063564	NonProperStrand	66	1	-18.0910
chr12	73353982	73353998	protein_coding	Rtn1	intron	ENSMUSG00000021087	NonProperStrand	36	chr11	87467491	87467529	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-9.5663
chrY	1018683	1018712	Low_complexity	CT-rich	Low_complexity	chrYCT-rich1018602	ProperStrand	2	chr2	90395129	90395165	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-17.1342
chr19	26484888	26484978	DNA	Charlie25	MER1_type	chr19Charlie2526484837	ProperStrand	1	chr19	26485043	26485143	LTR	MLT1F1	MaLR	chr19MLT1F126485057	NonProperStrand	1	1	-inf
chr17	39845847	39845916	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	4245751	4245831	protein_coding	Map2k7	utr3	ENSMUSG00000002948	ProperStrand	15	1	-4.5000
chr4	70354784	70354831	LINE	L1Md_F2	L1	chr4L1Md_F270354072	ProperStrand	1	chr13	49709669	49709731	protein_coding	Ogn	intron	ENSMUSG00000021390	ProperStrand	39	1	-inf
chr9	123461991	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	104437703	104440463	protein_coding	Hsd17b11	intron	ENSMUSG00000029311	NonProperStrand	34	2	-3.8532
chr2	91504667	91504684	protein_coding	Arhgap1	intron	ENSMUSG00000027247	ProperStrand	8	chr4	86856808	86857366	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	1	-14.1842
chr17	27851784	27851874	protein_coding	Spdef	utr3	ENSMUSG00000024215	NonProperStrand	15	chr15	95776378	95776478	protein_coding	Ano6	intron	ENSMUSG00000064210	ProperStrand	31	1	-16.1907
chr8	117288691	117288739	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr9	68766562	68766600	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-3.7896
chr11	77799328	77799415	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	chr2	160492429	160492497	protein_coding	Top1	intron	ENSMUSG00000070544	NonProperStrand	4	1	-15.8246
chr13	21722283	21722322	LTR	IAPEz-int	ERVK	chr13IAPEz-int21722038	NonProperStrand	5	chr16	30338469	30339615	protein_coding	Atp13a3	intron	ENSMUSG00000022533	ProperStrand	59	1	-17.2748
chrX	147009458	147009474	protein_coding	Apex2	intron	ENSMUSG00000025269	ProperStrand	2	chr19	8897660	8897695	protein_coding	Hnrnpul2	intron	ENSMUSG00000071659	ProperStrand	40	1	-20.0320
chr12	108118501	108118588	LTR	MTEa	MaLR	chr12MTEa108118476	NonProperStrand	1	chr12	108114961	108115012	lincRNA	1700013N06Rik	intron	ENSMUSG00000085801	NonProperStrand	30	1	-inf
chr15	38040764	38040856	SINE	B3	B2	chr15B338040716	ProperStrand	9	chr19	45980726	45980784	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	1	-14.0868
chr11	119649678	119649734	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	231	chr6	97883506	97883552	protein_coding	Mitf	intron	ENSMUSG00000035158	ProperStrand	50	1	-9.6872
chr11	12449307	12449340	LINE	L1Md_F2	L1	chr11L1Md_F212448415	NonProperStrand	4	chr17	71641583	71641659	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	1	-16.0653
chr7	72207004	72207092	protein_coding	Fam189a1	intron	ENSMUSG00000030518	ProperStrand	57	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-12.1947
chr2	25803409	25803526	protein_coding	Camsap1	intron	ENSMUSG00000026933	ProperStrand	2	chr4	35063889	35063926	protein_coding	Mob3b	intron	ENSMUSG00000073910	ProperStrand	86	1	-18.6404
chr17	15700718	15700818	protein_coding-noncoding	Prdm9	utr3	ENSMUSG00000051977	ProperStrand	3	chr17	15700875	15700965	protein_coding	Prdm9	intron	ENSMUSG00000051977	ProperStrand	5	3	-inf
chr10	117690011	117690101	LTR	MT2_Mm	ERVL	chr10MT2_Mm117689866	NonProperStrand	1	chr2	167334699	167334798	protein_coding	Rnf114	intron	ENSMUSG00000006418	NonProperStrand	70	1	-inf
chr12	82186678	82186764	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	chr11	82800617	82800683	protein_coding	Slfn9	intron	ENSMUSG00000069793	NonProperStrand	14	1	-12.8261
chr7	3654453	3654553	SINE	B1_Mur2	Alu	chr7B1_Mur23654468	ProperStrand	1	chr7	3654293	3654383	SINE	B1_Mus1	Alu	chr7B1_Mus13654293	NonProperStrand	1	1	-inf
chr5	103737081	103737217	LINE	Lx9	L1	chr5Lx9103737030	ProperStrand	2	chr5	103735400	103735579	LTR	RLTRETN_Mm	ERVK	chr5RLTRETN_Mm103735282	ProperStrand	5	2	-inf
chr1	106286492	106286520	Other	RMER1C	Other	chr1RMER1C106286151	ProperStrand	2	chr9	123462046	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr7	126978992	126979381	protein_coding	2610020H08Rik	intron	ENSMUSG00000030924	ProperStrand	15	chr1	44647302	44647356	protein_coding	Gulp1	intron	ENSMUSG00000056870	ProperStrand	10	1	-18.4947
chr17	39847205	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	126681402	126681467	SINE	B2_Mm2	B2	chr4B2_Mm2126681310	NonProperStrand	1	1	-inf
chr12	58968965	58972891	LTR	MTB	MaLR	chr12MTB58971241	NonProperStrand	1	chr12	91099344	91099434	protein_coding	Nrxn3	intron	ENSMUSG00000066392	NonProperStrand	182	1	-inf
chr19	40577677	40577873	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-10.4791
chrX	14825434	14825524	LINE	L1MB8	L1	chrXL1MB814825423	NonProperStrand	1	chrX	14825278	14825378	LINE	Lx4A	L1	chrXLx4A14824457	NonProperStrand	1	1	-inf
chr4	98546323	98546368	Other	RMER1B	Other	chr4RMER1B98545918	NonProperStrand	1	chr5	3631485	3631546	protein_coding	Pex1	intron	ENSMUSG00000005907	ProperStrand	26	1	-inf
chr3	22156653	22156716	LINE	L1_Mus1	L1	chr3L1_Mus122153976	NonProperStrand	6	chr9	68766619	68766698	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-14.3524
chr10	4357572	4357650	LINE	L1_Mus1	L1	chr10L1_Mus14357519	ProperStrand	9	chr11	119654732	119654814	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	231	1	-13.2078
chr17	39847578	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	61376655	61376772	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n61376622	ProperStrand	4	1	-3.7035
chr6	71632182	71632278	LINE	Lx7	L1	chr6Lx771631885	ProperStrand	2	chr17	39846485	39846666	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr13	44869573	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr10	80249185	80249237	protein_coding	Dot1l	exon	ENSMUSG00000061589	ProperStrand	91	1	-3.7075
chr2	5379266	5379336	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr1	163992357	163992405	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	2	-6.8345
chr3	10348576	10348602	protein_coding	Zfand1	exon	ENSMUSG00000039795	ProperStrand	4	chrX	85072955	85073072	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	NonProperStrand	79	1	-17.2343
chr11	60166038	60166071	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	chr11	60168009	60168089	protein_coding	Lrrc48	intron	ENSMUSG00000056598	ProperStrand	98	1	-8.7068
chr5	90628986	90629086	LINE	L1_Rod	L1	chr5L1_Rod90628986	NonProperStrand	1	chr5	90629275	90629365	LTR	RLTRETN_Mm	ERVK	chr5RLTRETN_Mm90629080	NonProperStrand	1	1	-inf
chr17	35666013	35666194	protein_coding-noncoding	Cchcr1	utr5	ENSMUSG00000040312	NonProperStrand	15	chr17	35665751	35665851	protein_coding	Cchcr1	exon	ENSMUSG00000040312	NonProperStrand	23	12	-21.6630
chr17	64668532	64668629	protein_coding	Pja2	intron	ENSMUSG00000024083	NonProperStrand	19	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	1	-14.4622
chr1	143620702	143620785	LINE	L1_Mur3	L1	chr1L1_Mur3143620547	NonProperStrand	1	chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	55350189	55350218	SINE	PB1D10	Alu	chr4PB1D1055350158	NonProperStrand	1	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-inf
chr17	39848144	39848199	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	78700031	78700074	SINE	MIRb	MIR	chr8MIRb78699919	NonProperStrand	1	1	-inf
chr14	25653634	25653754	LINE	L1Md_F	L1	chr14L1Md_F25653344	NonProperStrand	4	chr18	61722705	61722744	protein_coding	Csnk1a1	intron	ENSMUSG00000024576	NonProperStrand	46	1	-18.3756
chr17	23639499	23639535	LINE	L1Md_F2	L1	chr17L1Md_F223639420	NonProperStrand	2	chr6	91013190	91013235	protein_coding	Nup210	intron	ENSMUSG00000030091	ProperStrand	121	2	-inf
chr3	132660553	132660606	protein_coding	Gstcd	intron	ENSMUSG00000028018	ProperStrand	18	chr16	94623737	94623841	protein_coding	Ttc3	intron	ENSMUSG00000040785	ProperStrand	131	1	-12.8989
chr7	136982050	136982079	LINE	L1_Mm	L1	chr7L1_Mm136981438	NonProperStrand	4	chr7	136984732	136984811	LINE	Lx7	L1	chr7Lx7136983669	ProperStrand	3	1	-inf
chr4	56805904	56805920	protein_coding	Ikbkap	intron	ENSMUSG00000028431	ProperStrand	109	chr9	100931231	100931348	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	1	-10.9982
chr5	134586908	134598190	protein_coding	Gatsl2	intron	ENSMUSG00000015944	ProperStrand	38	chr13	97190561	97190619	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-9.8020
chr6	71049357	71049457	LTR	MTD	MaLR	chr6MTD71049331	NonProperStrand	1	chr6	71049230	71049320	LTR	RMER13A	ERVK	chr6RMER13A71048976	NonProperStrand	1	1	-inf
chr7	80309800	80309874	LTR	MLT1C	MaLR	chr7MLT1C80309820	ProperStrand	1	chr13	97190562	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr9	17987799	17987830	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr6	39708288	39708380	Simple_repeat	(GGAGA)n	Simple_repeat	chr6(GGAGA)n39708231	NonProperStrand	1	1	-inf
chr1	55000789	55000822	SINE	B2_Mm1a	B2	chr1B2_Mm1a55000775	NonProperStrand	5	chr15	78908858	78908881	protein_coding	Eif3l	intron	ENSMUSG00000033047	ProperStrand	16	1	-22.1000
chr4	109697916	109697982	LINE	L1MC4	L1	chr4L1MC4109697732	NonProperStrand	2	chr4	109697308	109697332	SINE	B4A	B4	chr4B4A109697081	NonProperStrand	1	1	-inf
chr4	130696345	130696419	LTR	ORR1B1	MaLR	chr4ORR1B1130696188	ProperStrand	1	chr9	123462076	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	19081064	19081082	SINE	B3	B2	chr7B319081001	ProperStrand	1	chr18	84248734	84248808	protein_coding	Tshz1	intron	ENSMUSG00000046982	ProperStrand	86	1	-inf
chr12	86498948	86499008	DNA	Tigger7	MER2_type	chr12Tigger786498918	NonProperStrand	2	chr17	34950949	34951019	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	1	-18.2989
chr6	94146516	94146587	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr17	15053174	15053235	protein_coding	Wdr27	intron	ENSMUSG00000046991	ProperStrand	6	1	-11.0180
chr12	54696812	54696946	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr16	77068837	77068858	protein_coding	Usp25	intron	ENSMUSG00000022867	ProperStrand	25	1	-12.1516
chr18	38328863	38328953	LTR	ORR1A2	MaLR	chr18ORR1A238328850	NonProperStrand	1	chr18	38328747	38328847	SINE	MIR	MIR	chr18MIR38328662	NonProperStrand	2	1	-inf
chr11	75649626	75649658	protein_coding	Rph3al	intron	ENSMUSG00000020847	ProperStrand	7	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-12.2660
chr1	58939408	58939518	LTR	ETnERV2-int	ERVK	chr1ETnERV2-int58937140	ProperStrand	4	chr14	55598945	55598990	protein_coding	Myh7	intron	ENSMUSG00000053093	NonProperStrand	12	2	-inf
chr1	189653005	189653021	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	103	chr8	79597651	79597776	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	1	-9.7941
chr17	39847511	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	28209291	28209402	LTR	MTB-int	MaLR	chr5MTB-int28208482	ProperStrand	2	1	-5.4040
chr17	39847250	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	109667299	109667398	pseudogene	Gm8473	.	ENSMUSG00000093543	NonProperStrand	2	1	-6.5615
chr6	125151822	125151922	LTR	MYSERV16_I-int	ERVK	chr6MYSERV16_I-int125151002	ProperStrand	1	chr6	125152104	125152194	LTR	RMER3D-int	ERVK	chr6RMER3D-int125152113	ProperStrand	1	1	-inf
chr8	79672817	79672882	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	chr8	72319357	72319429	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	1	-10.4248
chr13	6589807	6589903	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr1	59716373	59716411	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	1	-7.7896
chr10	23785346	23785410	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr16	90238528	90238591	protein_coding	Scaf4	intron	ENSMUSG00000022983	ProperStrand	134	1	-8.4457
chrX	107768799	107768922	LINE	Lx	L1	chrXLx107767750	ProperStrand	1	chr9	123461905	123461943	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	21791719	21791753	protein_coding	Vcl	intron	ENSMUSG00000021823	ProperStrand	63	chr11	70976214	70976272	protein_coding	Nlrp1b	intron	ENSMUSG00000070390	NonProperStrand	15	1	-14.7494
chr17	45571512	45571598	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	chr10	80249185	80249237	protein_coding	Dot1l	exon	ENSMUSG00000061589	ProperStrand	91	1	-10.4850
chr1	71597585	71597634	LINE	L2a	L2	chr1L2a71597569	NonProperStrand	4	chr12	78350926	78351003	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-11.5356
chr3	51408881	51408933	LINE	Lx6	L1	chr3Lx651408843	ProperStrand	1	chr4	117202582	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	1	-inf
chrX	166291210	166291227	protein_coding	Mid1	intron	ENSMUSG00000035299	ProperStrand	37	chr14	7917337	7919168	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-10.5334
chr10	120663868	120663912	Simple_repeat	(TGG)n	Simple_repeat	chr10(TGG)n120663875	ProperStrand	1	chr2	49007112	49007179	protein_coding	Mbd5	intron	ENSMUSG00000036792	ProperStrand	50	1	-inf
chr9	123462079	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	93336773	93336789	protein_coding	Prickle1	intron	ENSMUSG00000036158	ProperStrand	10	1	-4.3847
chr12	73305563	73305650	LINE	L1Md_T	L1	chr12L1Md_T73303972	ProperStrand	10	chr7	109520119	109520184	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-13.5071
chr10	35086524	35086614	LINE	L1Md_F2	L1	chr10L1Md_F235085447	NonProperStrand	1	chr10	35086783	35086883	LINE	L1_Mur2	L1	chr10L1_Mur235086618	NonProperStrand	1	1	-inf
chr5	146261168	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	109668661	109668731	protein_coding	1700012B07Rik	intron	ENSMUSG00000020617	NonProperStrand	12	1	-8.2893
chr17	39843829	39843888	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr19	46081580	46081661	lincRNA	4930505N22Rik	intron	ENSMUSG00000090325	ProperStrand	37	1	-3.8677
chr17	39846461	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	128814159	128814179	Simple_repeat	(CCG)n	Simple_repeat	chr4(CCG)n128814145	NonProperStrand	1	1	-inf
chr17	39846717	39846771	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	28042451	28042495	lincRNA	Gm15567	intron	ENSMUSG00000084974	ProperStrand	3	1	-4.3017
chr13	62094229	62094329	Satellite	MMSAT4	Satellite	chr13MMSAT462094215	NonProperStrand	1	chr13	62094526	62094616	Satellite	MMSAT4	Satellite	chr13MMSAT462094401	NonProperStrand	1	1	-inf
chr13	43980251	43980341	LINE	L2b	L2	chr13L2b43979901	ProperStrand	1	chr13	43980382	43980482	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n43980405	ProperStrand	1	1	-inf
chr6	108812248	108812338	Other	RMER1B	Other	chr6RMER1B108812225	NonProperStrand	2	chr6	108793484	108793584	protein_coding	Edem1	intron	ENSMUSG00000030104	ProperStrand	32	2	-inf
chr18	66190066	66190166	SINE	B1_Mm	Alu	chr18B1_Mm66190089	NonProperStrand	1	chr18	66189946	66190036	Simple_repeat	(TTCTC)n	Simple_repeat	chr18(TTCTC)n66189916	ProperStrand	1	1	-inf
chr4	139338097	139338187	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	chr16	10663971	10664071	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	1	-9.4034
chr17	23812423	23812478	protein_coding	Hcfc1r1	utr3	ENSMUSG00000023904	ProperStrand	3	chr13	97190562	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr13	73510025	73510115	LINE	L1MCa	L1	chr13L1MCa73509906	ProperStrand	2	chr13	73510112	73510938	LTR	MLT1F1	MaLR	chr13MLT1F173510745	NonProperStrand	4	2	-inf
chr8	84672169	84672199	LINE	Lx3C	L1	chr8Lx3C84671535	ProperStrand	9	chr9	120574294	120574392	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120574258	ProperStrand	26	1	-17.6422
chr17	39847460	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	104303399	104303421	protein_coding	Klhl8	intron	ENSMUSG00000029312	NonProperStrand	5	1	-3.2379
chr5	45442143	45442243	LINE	L1Md_F2	L1	chr5L1Md_F245442054	NonProperStrand	1	chr6	4679459	4679549	protein_coding	Sgce	intron	ENSMUSG00000004631	ProperStrand	9	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr8	124860657	124860769	protein_coding	Zfpm1	exon	ENSMUSG00000049577	NonProperStrand	51	1	-8.1738
chrX	77605932	77606010	LINE	L1VL4	L1	chrXL1VL477602386	ProperStrand	2	chrX	77609588	77609667	LINE	Lx3A	L1	chrXLx3A77609407	NonProperStrand	3	1	-20.8297
chr2	177478921	177478948	LINE	L1VL1	L1	chr2L1VL1177476150	NonProperStrand	6	chr4	74301356	74301406	LINE	L1Md_F2	L1	chr4L1Md_F274300597	NonProperStrand	5	1	-inf
chr1	119605586	119605610	LINE	Lx3B	L1	chr1Lx3B119605590	ProperStrand	1	chr17	39846822	39846943	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	144807659	144807718	SINE	B4A	B4	chr5B4A144807595	NonProperStrand	1	chr5	144810310	144810364	Satellite	ZP3AR	Satellite	chr5ZP3AR144810116	ProperStrand	5	1	-inf
chr17	94846304	94846410	LINE	L1MCa	L1	chr17L1MCa94846033	NonProperStrand	1	chr6	3201509	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr8	33856902	33856974	LINE	L1Md_A	L1	chr8L1Md_A33850474	ProperStrand	25	chr3	9550238	9550320	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-8.2469
chr4	95671291	95671328	protein_coding	Hook1	intron	ENSMUSG00000028572	ProperStrand	23	chr4	86478549	86478619	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-14.8970
chr17	39842997	39843038	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr15	89365409	89365440	protein_coding	Shank3	intron	ENSMUSG00000022623	ProperStrand	86	1	-4.6895
chr17	39847440	39847938	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	42216948	42251305	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	NonProperStrand	45	8	-5.9280
chr3	41594017	41594086	LINE	L1Md_F2	L1	chr3L1Md_F241593460	ProperStrand	28	chr3	41600205	41600264	LINE	L1Md_F2	L1	chr3L1Md_F241599914	ProperStrand	8	1	-17.7167
chr1	175888721	175888739	LINE	L1Md_F2	L1	chr1L1Md_F2175887331	NonProperStrand	2	chr11	10343450	10343470	LTR	RLTR6-int	ERV1	chr11RLTR6-int10336464	ProperStrand	1	1	-inf
chr8	28666895	28666912	LTR	RLTR21	ERVK	chr8RLTR2128666777	NonProperStrand	1	chr13	24822492	24822623	protein_coding	Fam65b	intron	ENSMUSG00000036006	NonProperStrand	42	1	-inf
chr17	26125344	26125520	lincRNA	1700022N22Rik	exon	ENSMUSG00000090452	ProperStrand	6	chr17	26125536	26126342	protein_coding	Rab11fip3	utr3	ENSMUSG00000037098	NonProperStrand	45	3	-inf
chr11	97781660	97781751	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr4	43492785	43492885	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-8.8517
chr17	39843607	39843697	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr17	36951510	36951610	protein_coding	H2-M10.6	intron	ENSMUSG00000037130	NonProperStrand	1	1	-inf
chr5	33671408	33671439	LTR	IAPEz-int	ERVK	chr5IAPEz-int33670890	NonProperStrand	3	chr9	123461957	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr5	146261301	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr19	5493396	5493510	protein_coding	Cfl1	intron	ENSMUSG00000056201	ProperStrand	65	1	-7.7177
chr19	53369876	53369976	SINE	B1_Mus1	Alu	chr19B1_Mus153369885	NonProperStrand	2	chr19	53369752	53369843	SINE	RSINE1	B4	chr19RSINE153369707	NonProperStrand	2	2	-inf
chr1	33461390	33461438	LINE	L1M4b	L1	chr1L1M4b33461295	ProperStrand	4	chr1	33396589	33396662	LINE	Lx7	L1	chr1Lx733395399	ProperStrand	1	1	-inf
chr4	147333518	147333591	SINE	ID	ID	chr4ID147333529	NonProperStrand	1	chr4	146126515	146126571	protein_coding	Zfp600	intron	ENSMUSG00000066007	ProperStrand	4	1	-inf
chr2	144197408	144197508	protein_coding-noncoding	Csrp2bp	utr5	ENSMUSG00000027425	ProperStrand	1	chr2	144197234	144197324	protein_coding	Csrp2bp	intron	ENSMUSG00000027425	ProperStrand	1	1	-inf
chr15	84829216	84829316	LINE	L1ME2	L1	chr15L1ME284829080	NonProperStrand	1	chr15	84829428	84829518	SINE	B1F	Alu	chr15B1F84829428	NonProperStrand	1	1	-inf
chr10	77103928	77104018	protein_coding-noncoding	Ube2g2	utr5	ENSMUSG00000009293	NonProperStrand	1	chr10	77103786	77103886	protein_coding	Ube2g2	intron	ENSMUSG00000009293	NonProperStrand	37	1	-inf
chr17	39847623	39847713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	71428338	71428438	LTR	MT2A	ERVL	chr6MT2A71428268	ProperStrand	1	1	-inf
chr5	110162001	110162044	LTR	IAP-d-int	ERVK	chr5IAP-d-int110161961	NonProperStrand	1	chr17	39843397	39843491	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr9	45680096	45680186	protein_coding-noncoding	Rnf214	utr3	ENSMUSG00000042790	ProperStrand	1	chr9	45679686	45679786	protein_coding	Rnf214	intron	ENSMUSG00000042790	ProperStrand	2	1	-inf
chr1	177119476	177119573	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	chr7	17004841	17004895	protein_coding	Zc3h4	intron	ENSMUSG00000059273	NonProperStrand	35	1	-12.4102
chr10	121369799	121369909	protein_coding	Srgap1	intron	ENSMUSG00000020121	NonProperStrand	108	chrX	101595352	101595402	protein_coding	Abcb7	intron	ENSMUSG00000031333	NonProperStrand	37	1	-11.8176
chr18	90586541	90586631	LINE	L1Md_F2	L1	chr18L1Md_F290581557	ProperStrand	3	chr18	90586720	90586820	LINE	L1Md_F2	L1	chr18L1Md_F290586716	ProperStrand	3	1	-20.2168
chr4	127906089	127906107	protein_coding	Csmd2	intron	ENSMUSG00000028804	NonProperStrand	11	chr15	81679002	81679112	protein_coding	Tob2	utr3	ENSMUSG00000048546	NonProperStrand	31	1	-16.8340
chr17	39848660	39848710	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	141590016	141590075	protein_coding	Tmem51	intron	ENSMUSG00000040616	ProperStrand	27	1	-3.0710
chr1	162718908	162720521	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.9771
chr13	27267890	27267980	LINE	L1Md_F2	L1	chr13L1Md_F227267109	ProperStrand	1	chr13	27268184	27268284	LTR	MYSERV16_I-int	ERVK	chr13MYSERV16_I-int27268133	NonProperStrand	1	1	-inf
chr9	110226834	110226907	SINE	B3	B2	chr9B3110226768	NonProperStrand	3	chr9	123462082	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr8	31149862	31149887	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr17	86824560	86825622	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	1	-9.6825
chr17	70963679	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr8	25840018	25840592	protein_coding	Adam5	intron	ENSMUSG00000031554	ProperStrand	56	1	-6.3438
chr17	4082102	4082202	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr18	15730559	15730649	protein_coding	Chst9	intron	ENSMUSG00000047161	ProperStrand	13	2	-21.2020
chrX	20401603	20401633	protein_coding	Araf	intron	ENSMUSG00000001127	ProperStrand	7	chr8	127549432	127549452	protein_coding	Tsnax	intron	ENSMUSG00000056820	ProperStrand	11	1	-21.2235
chr17	39848124	39848200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	4136307	4136358	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	2	-3.8038
chr3	88050369	88050472	protein_coding	Rhbg	intron	ENSMUSG00000001417	NonProperStrand	14	chr16	36078593	36078634	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	1	-14.1064
chr17	39843935	39843969	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr1	177258402	177258426	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	1	-3.3423
chr4	150255079	150255124	LTR	ORR1A2	MaLR	chr4ORR1A2150255034	NonProperStrand	1	chr4	150254677	150254754	LTR	RMER21B	ERV1	chr4RMER21B150254286	ProperStrand	1	1	-inf
chr18	56803391	56803491	LTR	MYSERV6-int	ERVK	chr18MYSERV6-int56802449	ProperStrand	1	chr18	56803701	56803791	LTR	MYSERV6-int	ERVK	chr18MYSERV6-int56803479	ProperStrand	1	1	-inf
chr8	114524128	114524201	protein_coding	Kars	intron	ENSMUSG00000031948	NonProperStrand	70	chr2	5379296	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.2544
chr2	153674377	153674450	LTR	MERVL_2A-int	ERVL	chr2MERVL_2A-int153673983	ProperStrand	3	chr2	153674449	153674908	LTR	MT2A	ERVL	chr2MT2A153674618	NonProperStrand	1	1	-inf
chr12	78350926	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr17	24719674	24719740	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	65	1	-5.7389
chr2	96787830	96787930	protein_coding	Lrrc4c	intron	ENSMUSG00000050587	NonProperStrand	42	chr14	33967623	33967713	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-12.2673
chr17	39847324	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	26907080	26907141	LTR	RMER13B	ERVK	chr5RMER13B26906276	ProperStrand	1	1	-inf
chr7	34990486	34990528	protein_coding	Gpi1	intron	ENSMUSG00000036427	NonProperStrand	43	chr19	25267613	25267694	protein_coding	Dock8	intron	ENSMUSG00000052085	ProperStrand	32	1	-13.9668
chr9	77792312	77792412	protein_coding	Elovl5	intron	ENSMUSG00000032349	ProperStrand	59	chr18	24998395	24998485	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	2	-14.4043
chr17	39847101	39847357	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	76623379	76623397	protein_coding	Col18a1	intron	ENSMUSG00000001435	ProperStrand	2	2	-inf
chr9	49010458	49010558	SINE	B1F2	Alu	chr9B1F249010476	NonProperStrand	2	chr9	49010372	49010463	SINE	B3A	B2	chr9B3A49010281	NonProperStrand	7	2	-inf
chr15	50654967	50655067	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	chr3	135492621	135492711	protein_coding	Slc39a8	intron	ENSMUSG00000053897	ProperStrand	45	1	-12.7786
chr17	39846010	39846110	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr13	51648240	51648330	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	33	2	-5.2282
chr10	80142598	80143898	SINE	ID_B1	B4	chr10ID_B180143832	NonProperStrand	1	chr10	80145285	80145460	lincRNA	Gm17306	intron	ENSMUSG00000091778	ProperStrand	20	1	-inf
chr17	39848488	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr18	35964989	35965007	protein_coding	Ube2d2	intron	ENSMUSG00000091896	ProperStrand	11	1	-4.7901
chr6	3201473	3201536	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	51469744	51469881	SINE	B1_Mm	Alu	chr6B1_Mm51469740	ProperStrand	10	2	-10.4471
chr6	38434108	38434208	protein_coding-noncoding	Ubn2	utr5	ENSMUSG00000038538	ProperStrand	9	chr6	38434002	38434092	protein_coding	Ubn2	intron	ENSMUSG00000038538	ProperStrand	33	4	-inf
chr1	143230912	143231002	LINE	L1Md_F2	L1	chr1L1Md_F2143225790	ProperStrand	1	chr1	143231237	143231337	LINE	L1Md_F2	L1	chr1L1Md_F2143230982	ProperStrand	1	1	-inf
chr18	4922461	4922535	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr16	35081097	35081181	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	1	-6.8999
chr1	63179350	63179368	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr9	118674951	118674989	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.5334
chr12	36156406	36156485	LINE	L1Md_F2	L1	chr12L1Md_F236155940	ProperStrand	1	chr12	36146352	36146392	Other	RMER1C	Other	chr12RMER1C36145478	NonProperStrand	7	1	-inf
chr11	87426780	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr14	45205854	45205944	protein_coding	Gm8247	intron	ENSMUSG00000091122	NonProperStrand	2	1	-19.0429
chr11	55504500	55504590	LINE	Lx5	L1	chr11Lx555504447	NonProperStrand	1	chr17	39846742	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	117167797	117167864	protein_coding	Rasgrp1	intron	ENSMUSG00000027347	NonProperStrand	18	chr5	105706507	105706586	protein_coding	Gbp6	intron	ENSMUSG00000079362	NonProperStrand	66	1	-14.2735
chr17	21918505	21918595	LTR	MTC	MaLR	chr17MTC21918325	ProperStrand	2	chr17	21918599	21918699	SINE	B1_Mus2	Alu	chr17B1_Mus221918576	NonProperStrand	2	2	-inf
chr6	75640984	75641003	Other	RMER1C	Other	chr6RMER1C75640660	NonProperStrand	1	chr16	91815918	91816049	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	1	-inf
chr13	23436339	23436415	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	chr15	34440789	34440860	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	1	-15.1057
chr12	102394884	102394900	LINE	L1_Mm	L1	chr12L1_Mm102394381	NonProperStrand	1	chr19	5802274	5802406	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr9	123461799	123462185	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	90395133	90395192	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	8	-5.0620
chr11	19928773	19928869	Other	RMER1C	Other	chr11RMER1C19928488	ProperStrand	5	chr11	19928137	19928163	SINE	ID_B1	B4	chr11ID_B119928091	ProperStrand	1	1	-inf
chr9	123461848	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	24628597	24628623	protein_coding	Klhl32	intron	ENSMUSG00000040387	ProperStrand	26	2	-4.5840
chr19	23742553	23742643	SINE	B1_Mus1	Alu	chr19B1_Mus123742554	NonProperStrand	1	chr19	23896612	23896712	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	1	-inf
chr19	21617643	21617678	LTR	RLTR20A	ERVK	chr19RLTR20A21617568	ProperStrand	1	chr11	118081310	118081401	protein_coding	Cyth1	intron	ENSMUSG00000017132	NonProperStrand	253	1	-inf
chr2	59232292	59232382	LINE	L1MDa	L1	chr2L1MDa59232129	NonProperStrand	3	chr2	59232405	59232505	LINE	L1MDa	L1	chr2L1MDa59232398	NonProperStrand	3	3	-inf
chr9	40804749	40804821	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr9	42849761	42849849	protein_coding	Arhgef12	intron	ENSMUSG00000059495	ProperStrand	101	2	-10.3651
chr11	12409962	12410000	LTR	IAPEz-int	ERVK	chr11IAPEz-int12407648	ProperStrand	2	chr2	5379271	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr19	5800276	5800332	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	119691428	119691529	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	231	2	-3.6560
chr13	93162206	93162306	LINE	L1Md_F2	L1	chr13L1Md_F293161637	ProperStrand	1	chr7	54187225	54187315	protein_coding	Uevld	intron	ENSMUSG00000043262	NonProperStrand	1	1	-inf
chr11	68190172	68190249	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	chr8	12432045	12432114	protein_coding	Gm5607	utr3	ENSMUSG00000047935	NonProperStrand	2	1	-16.6883
chr15	12819795	12819874	protein_coding	Drosha	exon	ENSMUSG00000022191	NonProperStrand	14	chr18	69567533	69567602	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	3	-19.6968
chr6	124681738	124681819	protein_coding	Ptpn6	intron	ENSMUSG00000004266	NonProperStrand	51	chr14	101869880	101869951	protein_coding	Tbc1d4	intron	ENSMUSG00000033083	NonProperStrand	12	1	-15.6414
chr11	3291745	3293282	protein_coding	Limk2	intron	ENSMUSG00000020451	NonProperStrand	80	chr12	103392561	103392577	protein_coding	Slc24a4	intron	ENSMUSG00000041771	NonProperStrand	43	1	-12.1164
chr9	53068408	53068508	LINE	L1MB7	L1	chr9L1MB753068090	ProperStrand	1	chr9	53068965	53069055	LTR	MT2A	ERVL	chr9MT2A53068700	ProperStrand	7	1	-inf
chr16	94399430	94399482	protein_coding	Hlcs	intron	ENSMUSG00000040820	NonProperStrand	74	chr7	133055813	133055855	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-4.7761
chr17	39847039	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	156055003	156055199	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n156055001	ProperStrand	2	2	-inf
chrX	73515871	73515961	SINE	B1_Mm	Alu	chrXB1_Mm73515872	ProperStrand	1	chrX	73515769	73515869	Simple_repeat	(TTTG)n	Simple_repeat	chrX(TTTG)n73515788	NonProperStrand	1	1	-inf
chr12	32827153	32827239	LINE	L2	L2	chr12L232827041	NonProperStrand	2	chr6	33602804	33602858	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-14.2631
chr4	118071348	118071448	protein_coding	Szt2	intron	ENSMUSG00000033253	NonProperStrand	3	chr13	100851509	100851599	protein_coding	Bdp1	intron	ENSMUSG00000049658	NonProperStrand	7	1	-25.2264
chr17	39847274	39847332	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	29839839	29839886	protein_coding	Ryr1	intron	ENSMUSG00000030592	ProperStrand	7	1	-3.6430
chr8	45305846	45305862	LINE	L1MCb	L1	chr8L1MCb45305797	NonProperStrand	4	chr6	3201455	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-8.3508
chr17	39847072	39847162	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	40911670	40911686	protein_coding	Ccnj	intron	ENSMUSG00000025010	ProperStrand	8	1	-3.3803
chr17	39847812	39847838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	37542098	37542146	protein_coding	Spry1	exon	ENSMUSG00000037211	ProperStrand	5	1	-3.2379
chr17	39846725	39846814	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	113853794	113853834	LTR	RLTR20C	ERVK	chr5RLTR20C113853621	NonProperStrand	1	1	-inf
chr13	75611838	75611928	LINE	L1Md_A	L1	chr13L1Md_A75611837	ProperStrand	1	chr13	75611678	75611778	LINE	L1Md_T	L1	chr13L1Md_T75611264	ProperStrand	1	1	-inf
chr5	109454586	109454686	LINE	L1Md_Gf	L1	chr5L1Md_Gf109454599	ProperStrand	2	chr5	109454283	109454373	LTR	RLTR13C2	ERVK	chr5RLTR13C2109453881	ProperStrand	1	1	-inf
chr13	60934411	60934501	LINE	L1_Mur3	L1	chr13L1_Mur360934000	ProperStrand	7	chr10	40437560	40437675	protein_coding	9030224M15Rik	intron	ENSMUSG00000045555	ProperStrand	68	3	-21.7905
chr11	88655850	88655868	SINE	B4	B4	chr11B488655775	ProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr1	160368240	160368281	protein_coding	Astn1	intron	ENSMUSG00000026587	NonProperStrand	77	chr9	21792040	21792120	protein_coding	Rgl3	exon	ENSMUSG00000040146	ProperStrand	30	1	-12.9237
chr4	94874354	94874454	lincRNA	Gm12708	intron	ENSMUSG00000084918	ProperStrand	2	chr9	71478229	71478319	protein_coding-noncoding	Cgnl1	utr3	ENSMUSG00000032232	ProperStrand	26	1	-20.6107
chr6	67281735	67281813	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr16	33556064	33556096	protein_coding	Slc12a8	intron	ENSMUSG00000035506	ProperStrand	102	1	-8.4964
chr6	56905310	56905430	LINE	L1Md_A	L1	chr6L1Md_A56905112	ProperStrand	6	chr6	56902511	56902547	LINE	L1Md_T	L1	chr6L1Md_T56902498	ProperStrand	1	1	-inf
chr5	146261152	146261207	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	56915741	56915836	protein_coding	Rfx2	utr3	ENSMUSG00000024206	ProperStrand	21	1	-7.1436
chr13	65255275	65255327	LINE	L1ME3B	L1	chr13L1ME3B65255228	NonProperStrand	1	chr13	65250194	65250256	LINE	Lx2B	L1	chr13Lx2B65250169	ProperStrand	2	1	-inf
chr7	144502741	144502829	protein_coding	Ebf3	intron	ENSMUSG00000010476	ProperStrand	116	chr17	6430231	6435013	protein_coding	Dynlt1b	intron	ENSMUSG00000091454	ProperStrand	3	1	-17.0576
chr3	101576978	101577004	LINE	L1_Mus2	L1	chr3L1_Mus2101576765	NonProperStrand	1	chr10	127395736	127395769	Low_complexity	GA-rich	Low_complexity	chr10GA-rich127395678	ProperStrand	1	1	-inf
chr2	168601390	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	chr4	149495477	149495583	protein_coding	Slc2a5	intron	ENSMUSG00000028976	ProperStrand	11	1	-17.4015
chr11	4702086	4702177	protein_coding	Nf2	intron	ENSMUSG00000009073	ProperStrand	20	chr9	123461935	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr6	124811882	124811964	protein_coding	Gpr162	utr5	ENSMUSG00000038390	ProperStrand	81	chr13	97190558	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.5440
chr17	70800324	70800427	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chrX	162829010	162829046	protein_coding	Ofd1	intron	ENSMUSG00000040586	ProperStrand	27	1	-10.0523
chr17	39843015	39843046	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	30653623	30653708	protein_coding	Btbd9	intron	ENSMUSG00000062202	NonProperStrand	156	1	-3.5694
chr17	39846651	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	130703392	130703482	SINE	B4A	B4	chr1B4A130703329	ProperStrand	2	2	-inf
chr1	102942766	102942866	LINE	L1Md_A	L1	chr1L1Md_A102941845	NonProperStrand	1	chr1	102942877	102942967	LTR	RodERV21-int	ERV1	chr1RodERV21-int102942873	ProperStrand	1	1	-inf
chr11	111246392	111246482	LINE	Lx2B	L1	chr11Lx2B111246033	ProperStrand	1	chr11	111246639	111246739	LINE	Lx2B	L1	chr11Lx2B111246629	ProperStrand	1	1	-inf
chr6	88487769	88487869	LINE	L1_Mur3	L1	chr6L1_Mur388487758	NonProperStrand	4	chr6	88487608	88487698	LTR	RLTR11A	ERVK	chr6RLTR11A88487220	ProperStrand	6	3	-inf
chr2	26925652	26926775	protein_coding	Tmem8c	intron	ENSMUSG00000009214	ProperStrand	5	chr16	31103570	31103599	protein_coding	Acap2	intron	ENSMUSG00000049076	ProperStrand	103	1	-16.1027
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chrX	81084338	81084354	protein_coding	Dmd	intron	ENSMUSG00000045103	NonProperStrand	39	1	-12.4983
chr5	32891683	32891716	antisense	Gm15614	.	ENSMUSG00000085234	NonProperStrand	24	chr4	149002773	149002850	protein_coding	Clstn1	intron	ENSMUSG00000039953	NonProperStrand	81	1	-13.2751
chr12	9420349	9420449	LINE	L1Md_F2	L1	chr12L1Md_F29414350	ProperStrand	1	chr12	9420669	9420759	LTR	MTD	MaLR	chr12MTD9420598	ProperStrand	1	1	-inf
chr10	78401855	78401895	LINE	Lx3_Mus	L1	chr10Lx3_Mus78401747	NonProperStrand	3	chr13	17781857	17781974	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	1	-18.4369
chr2	30834189	30834278	protein_coding	BC005624	intron	ENSMUSG00000026851	NonProperStrand	1	chr7	63209263	63209289	protein_coding	Nipa2	intron	ENSMUSG00000030452	ProperStrand	2	1	-inf
chr8	33907111	33907212	SINE	B2_Mm1a	B2	chr8B2_Mm1a33907046	ProperStrand	14	chr8	33907229	33907319	SINE	B4A	B4	chr8B4A33907234	NonProperStrand	6	6	-inf
chr14	62691634	62691692	LINE	Lx7	L1	chr14Lx762690923	ProperStrand	3	chr16	33047588	33047686	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	1	-inf
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr5	108503772	108503819	protein_coding	Mtf2	intron	ENSMUSG00000029267	ProperStrand	7	1	-16.0634
chrX	7922438	7922913	LINE	L1_Mm	L1	chrXL1_Mm7921711	NonProperStrand	11	chr9	65201724	65201789	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-14.5250
chr11	3912630	3912747	LTR	ORR1D1-int	MaLR	chr11ORR1D1-int3912373	ProperStrand	2	chr11	3913529	3913565	Simple_repeat	(CAT)n	Simple_repeat	chr11(CAT)n3913435	NonProperStrand	2	2	-inf
chr16	35981624	35981648	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr2	153963588	153963626	protein_coding	Bpifa3	intron	ENSMUSG00000027482	ProperStrand	2	1	-17.3222
chr17	23557360	23557376	LINE	L1_Mur1	L1	chr17L1_Mur123556034	ProperStrand	1	chr9	123461822	123461917	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	50420129	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr15	64059274	64059307	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	1	-6.5871
chr9	96180493	96180635	protein_coding	Tfdp2	intron	ENSMUSG00000032411	ProperStrand	65	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-11.7957
chr9	83987650	83987706	protein_coding	Bckdhb	intron	ENSMUSG00000032263	ProperStrand	63	chr4	141078244	141078308	protein_coding	Spen	exon	ENSMUSG00000040761	ProperStrand	77	1	-11.4227
chr11	109011675	109011718	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	3834523	3834545	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	1	-6.0996
chr16	33011839	33011893	protein_coding	Lrch3	intron	ENSMUSG00000022801	ProperStrand	84	chr1	194998717	194998761	protein_coding	A130010J15Rik	intron	ENSMUSG00000079144	ProperStrand	1	1	-inf
chr2	90894730	90894767	protein_coding	Psmc3	exon	ENSMUSG00000002102	NonProperStrand	3	chr2	5379296	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr3	108911432	108911459	protein_coding	4930443G12Rik	intron	ENSMUSG00000027880	NonProperStrand	14	chr2	5379289	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.4379
chr9	123461890	123461917	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	156296681	156296698	protein_coding	Epb4.1l1	intron	ENSMUSG00000027624	NonProperStrand	4	1	-6.3300
chr9	104060398	104060498	protein_coding	Dnajc13	intron	ENSMUSG00000032560	ProperStrand	36	chr8	70895676	70895972	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-11.5958
chr3	25204914	25205014	LINE	L1Md_A	L1	chr3L1Md_A25204792	NonProperStrand	1	chr3	25204643	25204733	LINE	MusHAL1	L1	chr3MusHAL125204179	NonProperStrand	1	1	-inf
chr1	100180180	100180219	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr17	74675680	74675757	protein_coding	Memo1	intron	ENSMUSG00000058704	NonProperStrand	64	1	-10.5341
chr15	82158699	82158737	LTR	MTD	MaLR	chr15MTD82158586	ProperStrand	1	chr11	117151706	117151760	protein_coding	Sept9	exon	ENSMUSG00000059248	ProperStrand	151	1	-inf
chr13	97190562	97190591	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr18	77846322	77846424	protein_coding	8030462N17Rik	intron	ENSMUSG00000047466	NonProperStrand	40	1	-5.9165
chr3	75621451	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr8	91108363	91108392	protein_coding	Nkd1	intron	ENSMUSG00000031661	ProperStrand	33	1	-14.1046
chr17	39848669	39848745	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr18	9300036	9300071	LTR	ORR1A4	MaLR	chr18ORR1A49300000	ProperStrand	1	1	-inf
chr10	8282262	8282362	LINE	L1MA6	L1	chr10L1MA68281973	NonProperStrand	1	chr10	8282512	8282602	LTR	ORR1D2	MaLR	chr10ORR1D28282515	ProperStrand	1	1	-inf
chr11	78267382	78267472	SINE	B2_Mm2	B2	chr11B2_Mm278267289	NonProperStrand	1	chr11	78267560	78267662	SINE	PB1D7	Alu	chr11PB1D778267527	NonProperStrand	2	1	-inf
chr2	156829224	156829281	protein_coding	Dsn1	intron	ENSMUSG00000027635	ProperStrand	19	chr6	72688857	72688920	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	1	-11.2737
chr1	69269140	69269240	LTR	IAP-d-int	ERVK	chr1IAP-d-int69267775	ProperStrand	1	chr7	5409457	5409547	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	1	-inf
chr8	33917807	33917836	SINE	B3	B2	chr8B333917776	NonProperStrand	1	chr11	80699781	80699888	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	161	1	-inf
chr2	138712936	138713036	SINE	B1_Mus1	Alu	chr2B1_Mus1138712958	NonProperStrand	1	chr2	138712708	138712798	SINE	B2_Mm2	B2	chr2B2_Mm2138712670	NonProperStrand	1	1	-inf
chr16	57554835	57554861	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-3.2226
chr3	86789341	86789390	LINE	L1_Mus2	L1	chr3L1_Mus286788941	ProperStrand	8	chr3	86791016	86791295	protein_coding	Cd1d2	exon	ENSMUSG00000041750	NonProperStrand	9	2	-inf
chr7	19036001	19036072	LINE	MusHAL1	L1	chr7MusHAL119035230	ProperStrand	4	chr1	130159579	130159595	protein_coding	Ubxn4	intron	ENSMUSG00000026353	ProperStrand	3	1	-inf
chr18	63078738	63078754	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr19	21714768	21714827	protein_coding	1110059E24Rik	intron	ENSMUSG00000035171	NonProperStrand	12	1	-16.6507
chr17	39846775	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	57053642	57053729	LTR	MT2A	ERVL	chrXMT2A57053621	NonProperStrand	1	1	-inf
chr12	86512210	86512310	protein_coding	Pgf	intron	ENSMUSG00000004791	NonProperStrand	195	chr16	14153457	14153547	protein_coding	4921513D23Rik	intron	ENSMUSG00000060657	ProperStrand	75	1	-9.2111
chr7	107342166	107342239	LINE	L1_Mur3	L1	chr7L1_Mur3107341966	NonProperStrand	1	chr3	95480725	95480764	protein_coding	Adamtsl4	utr3	ENSMUSG00000015850	NonProperStrand	7	1	-inf
chr9	96691143	96691258	SINE	B3	B2	chr9B396691163	ProperStrand	2	chr14	47387923	47387948	protein_coding	Cdkn3	intron	ENSMUSG00000037628	ProperStrand	2	1	-19.8939
chr15	82547268	82547368	LTR	RMER17C-int	ERVK	chr15RMER17C-int82546810	ProperStrand	1	chr15	80081494	80081584	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	ProperStrand	1	1	-inf
chr17	39847072	39847155	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	95717821	95717883	SINE	ID_B1	B4	chr11ID_B195717729	NonProperStrand	1	1	-inf
chr11	106514685	106514785	SINE	B1F	Alu	chr11B1F106514675	NonProperStrand	1	chr11	106514802	106514892	SINE	B2_Mm1a	B2	chr11B2_Mm1a106514813	NonProperStrand	1	1	-inf
chr9	3234066	3234156	LTR	RLTR22_Mur	ERVK	chr9RLTR22_Mur3233735	NonProperStrand	1	chr9	3234254	3234354	LTR	RLTR22_Mur	ERVK	chr9RLTR22_Mur3234185	NonProperStrand	2	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr4	106837970	106838063	protein_coding	2210012G02Rik	intron	ENSMUSG00000028619	ProperStrand	16	1	-12.9671
chr6	3201479	3201505	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr1	167236674	167236690	protein_coding	Gpr161	exon	ENSMUSG00000040836	NonProperStrand	180	3	-3.5802
chr11	79240713	79240776	protein_coding	Nf1	intron	ENSMUSG00000020716	NonProperStrand	33	chr14	27746279	27746321	protein_coding	Appl1	intron	ENSMUSG00000040760	NonProperStrand	6	1	-18.2066
chr17	39846750	39846809	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	104335478	104335547	SINE	PB1D9	Alu	chr11PB1D9104335441	NonProperStrand	1	1	-inf
chr18	22729761	22729851	LINE	L1Md_T	L1	chr18L1Md_T22724040	NonProperStrand	2	chr18	22729891	22729991	LTR	RLTR45	ERVK	chr18RLTR4522729873	NonProperStrand	1	1	-inf
chr1	133005696	133005786	LINE	L1MB1	L1	chr1L1MB1133005686	ProperStrand	3	chr13	54680471	54680571	protein_coding	Arl10	utr3	ENSMUSG00000025870	NonProperStrand	34	1	-19.2479
chr16	24984416	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr2	31132835	31132922	protein_coding	Ncs1	intron	ENSMUSG00000062661	NonProperStrand	50	1	-10.3119
chr4	99939880	99939968	protein_coding	Ror1	intron	ENSMUSG00000035305	ProperStrand	128	chr6	125176698	125176798	protein_coding	Tapbpl	exon	ENSMUSG00000038213	ProperStrand	61	2	-16.4952
chr2	28521680	28527462	protein_coding-noncoding	Tsc1	utr5	ENSMUSG00000026812	ProperStrand	14	chr2	28527261	28528084	protein_coding	Tsc1	intron	ENSMUSG00000026812	ProperStrand	110	2	-19.5034
chr4	88194529	88194588	LINE	L1M3a	L1	chr4L1M3a88194457	ProperStrand	1	chr14	11734958	11735007	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-inf
chr10	4121739	4121804	LINE	L1Md_F2	L1	chr10L1Md_F24121616	ProperStrand	3	chr4	134064019	134064074	protein_coding	Paqr7	utr3	ENSMUSG00000037348	ProperStrand	2	2	-inf
chrX	4899374	4899406	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr2	112462894	112464739	protein_coding	Aven	intron	ENSMUSG00000003604	ProperStrand	47	1	-14.9592
chr7	63914110	63914210	LTR	RMER15-int	ERVL	chr7RMER15-int63913770	NonProperStrand	7	chr7	63914221	63914311	Other	RMER1A	Other	chr7RMER1A63914203	ProperStrand	9	3	-inf
chr17	39846468	39846702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	3389035	3390198	protein_coding	A430078G23Rik	exon	ENSMUSG00000074497	NonProperStrand	12	2	-3.1058
chr17	34952014	34952072	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr11	74928429	74928466	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-8.7163
chr4	132352773	132352816	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr11	53698859	53698899	protein_coding	Slc22a5	intron	ENSMUSG00000018900	ProperStrand	15	1	-12.5727
chr3	31099592	31099692	LINE	L1MB2	L1	chr3L1MB231099334	NonProperStrand	10	chr3	31099080	31099170	SINE	B4A	B4	chr3B4A31098986	NonProperStrand	1	1	-inf
chr17	38014195	38014295	LTR	MERVL-int	ERVL	chr17MERVL-int38014162	NonProperStrand	9	chr17	38014092	38014182	LTR	ORR1A3-int	MaLR	chr17ORR1A3-int38014075	NonProperStrand	3	3	-inf
chrX	159558862	159558904	LINE	Lx5	L1	chrXLx5159558869	NonProperStrand	1	chr17	39846586	39846666	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	132626899	132626934	protein_coding	Nsmce1	intron	ENSMUSG00000030750	NonProperStrand	5	chr13	113973209	113973286	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-13.6512
chr17	39848199	39848250	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	19565326	19565367	protein_coding	Wwp1	intron	ENSMUSG00000041058	ProperStrand	17	1	-3.6758
chr3	116595165	116605199	protein_coding	Frrs1	intron	ENSMUSG00000033386	ProperStrand	12	chr9	103196723	103196783	protein_coding	1300017J02Rik	intron	ENSMUSG00000033688	ProperStrand	4	1	-inf
chr17	39847551	39848032	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	136200907	136226240	protein_coding	Ppfia4	exon	ENSMUSG00000026458	ProperStrand	22	4	-4.2948
chr17	39846619	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	139284094	139284184	SINE	B1_Mm	Alu	chrXB1_Mm139284048	ProperStrand	1	1	-inf
chr15	97702010	97702033	protein_coding	Vdr	intron	ENSMUSG00000022479	ProperStrand	5	chr1	160689524	160689655	protein_coding	Pappa2	intron	ENSMUSG00000073530	ProperStrand	27	1	-19.1007
chr17	39848668	39848711	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr13	71666202	71666220	Simple_repeat	(TC)n	Simple_repeat	chr13(TC)n71666206	ProperStrand	2	1	-8.7208
chr17	39848506	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	57975978	57976029	protein_coding	Wdyhv1	intron	ENSMUSG00000022359	NonProperStrand	10	1	-4.9823
chr17	39845998	39846048	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	72964704	72964755	SINE	B1_Mur3	Alu	chr8B1_Mur372964642	NonProperStrand	1	1	-inf
chr12	103592980	103593080	protein_coding-noncoding	Rin3	utr5	ENSMUSG00000044456	NonProperStrand	1	chr12	103593182	103593272	protein_coding	Rin3	intron	ENSMUSG00000044456	NonProperStrand	4	1	-inf
chr2	119641687	119641707	protein_coding	Tyro3	intron	ENSMUSG00000027298	NonProperStrand	2	chr15	83149672	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-17.8398
chr14	122207350	122207421	SINE	B3	B2	chr14B3122207314	ProperStrand	1	chr14	122204908	122204989	SINE	ID_B1	B4	chr14ID_B1122204864	NonProperStrand	1	1	-inf
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	117924710	117924794	SINE	B3	B2	chr6B3117924621	NonProperStrand	10	2	-3.6759
chr14	31789998	31790048	protein_coding	Nek4	intron	ENSMUSG00000021918	NonProperStrand	10	chr2	32962083	32962574	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-12.5645
chr3	146617309	146617409	protein_coding	Ttll7	intron	ENSMUSG00000036745	ProperStrand	4	chr3	53421889	53421979	protein_coding	Frem2	intron	ENSMUSG00000037016	ProperStrand	21	1	-20.0280
chrX	144351305	144351348	LINE	L1Md_A	L1	chrXL1Md_A144350762	ProperStrand	4	chr6	3201478	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-8.3508
chr5	146261020	146261046	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	72591883	72591899	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	NonProperStrand	3	1	-11.3685
chr8	45248665	45248758	LINE	L1Md_F3	L1	chr8L1Md_F345243637	NonProperStrand	6	chr5	36794320	36794382	lincRNA	2210406O10Rik	intron	ENSMUSG00000039563	ProperStrand	73	1	-16.4401
chr1	171889680	171889709	protein_coding	Hsd17b7	intron	ENSMUSG00000026675	NonProperStrand	2	chr4	35014839	35014938	protein_coding	Mob3b	intron	ENSMUSG00000073910	ProperStrand	86	1	-18.6404
chr4	120551610	120551658	protein_coding	Rims3	intron	ENSMUSG00000032890	NonProperStrand	44	chr5	38673677	38673772	protein_coding	Otop1	intron	ENSMUSG00000051596	NonProperStrand	55	1	-12.8239
chr5	146261022	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	102414700	102414789	protein_coding	Atf7	intron	ENSMUSG00000052414	NonProperStrand	47	1	-5.5389
chr11	101097766	101097856	SINE	B2_Mm2	B2	chr11B2_Mm2101097744	ProperStrand	4	chr11	101097653	101097753	SINE	B3A	B2	chr11B3A101097644	ProperStrand	6	4	-inf
chr17	39846353	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	65196581	65201842	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	15	-6.9689
chr10	80293722	80293812	SINE	B1_Mur1	Alu	chr10B1_Mur180293682	NonProperStrand	10	chr10	80293821	80294011	SINE	B3A	B2	chr10B3A80293824	NonProperStrand	6	3	-inf
chr11	109011651	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr18	76307197	76307294	protein_coding	Zbtb7c	utr3	ENSMUSG00000044646	ProperStrand	68	1	-5.8534
chr2	124662131	124662149	LINE	L1_Mur2	L1	chr2L1_Mur2124661599	ProperStrand	5	chr8	122502221	122506032	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-11.3494
chr2	22744845	22744908	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	166701387	166701440	protein_coding	Arfgef2	intron	ENSMUSG00000074582	NonProperStrand	54	1	-7.0178
chr17	39847029	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	41499289	41499379	protein_coding	Sclt1	intron	ENSMUSG00000059834	NonProperStrand	5	1	-3.1907
chr15	25766062	25766079	LTR	MER21B	ERV1	chr15MER21B25765666	NonProperStrand	1	chr13	44895250	44895377	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-inf
chr17	39846209	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	57958348	57958367	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	11	-6.3926
chr11	70527275	70527499	protein_coding	Kif1c	intron	ENSMUSG00000020821	ProperStrand	20	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-10.0677
chr9	27087513	27088011	LINE	L1Md_F2	L1	chr9L1Md_F227087191	NonProperStrand	2	chr6	128436635	128436696	protein_coding	Pzp	intron	ENSMUSG00000030359	ProperStrand	55	1	-19.1124
chr2	78872039	78872124	LINE	Lx	L1	chr2Lx78871835	NonProperStrand	1	chr19	47386779	47386828	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	ProperStrand	170	1	-inf
chr4	47780833	47780933	LTR	RLTR44C	ERVK	chr4RLTR44C47780748	ProperStrand	1	chr4	47780514	47780604	SINE	B3A	B2	chr4B3A47780403	NonProperStrand	1	1	-inf
chr13	24473811	24473901	protein_coding	Cmah	intron	ENSMUSG00000016756	ProperStrand	6	chr10	24018187	24018287	protein_coding	Moxd1	intron	ENSMUSG00000020000	NonProperStrand	2	1	-inf
chr18	83648478	83648578	LTR	MTB	MaLR	chr18MTB83648495	NonProperStrand	1	chr18	83648385	83648475	LTR	ORR1D2	MaLR	chr18ORR1D283648348	NonProperStrand	1	1	-inf
chr7	30463636	30465595	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int30464699	ProperStrand	4	chr7	30465594	30465801	LTR	RLTR20D	ERVK	chr7RLTR20D30465628	ProperStrand	4	4	-inf
chr8	33784436	33784536	LINE	L1MB3	L1	chr8L1MB333784036	NonProperStrand	4	chr8	33784747	33784837	SINE	B4A	B4	chr8B4A33784757	NonProperStrand	1	1	-inf
chr13	119706697	119706726	LINE	L1Md_F2	L1	chr13L1Md_F2119706478	NonProperStrand	24	chr13	44906317	44906379	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-10.6777
chr17	39847733	39847787	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	92504446	92504510	protein_coding	Clic6	intron	ENSMUSG00000022949	ProperStrand	4	1	-3.7035
chr2	5641268	5641368	SINE	B1_Mur4	Alu	chr2B1_Mur45641228	ProperStrand	3	chr2	5641423	5641513	SINE	B4A	B4	chr2B4A5641420	NonProperStrand	5	2	-inf
chr15	41774443	41774546	LINE	Lx2B	L1	chr15Lx2B41770865	ProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr7	34126225	34126279	LINE	L1M3	L1	chr7L1M334126190	NonProperStrand	1	chr7	34125220	34125284	LINE	L1Md_F3	L1	chr7L1Md_F334125195	ProperStrand	1	1	-inf
chr7	113246071	113246162	LINE	L1Md_F2	L1	chr7L1Md_F2113245774	ProperStrand	1	chr7	113238011	113238050	LINE	Lx	L1	chr7Lx113237792	ProperStrand	9	1	-inf
chr12	105381962	105381979	LTR	RLTR22_Mur	ERVK	chr12RLTR22_Mur105381922	NonProperStrand	1	chr17	39846453	39846508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847353	39848079	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	20675357	20692567	protein_coding	Eif4g1	utr5	ENSMUSG00000045983	ProperStrand	123	13	-3.3072
chr16	3884350	3884440	protein_coding-noncoding	Zfp597	utr5	ENSMUSG00000039789	ProperStrand	2	chr16	3871174	3871274	protein_coding	Zfp597	exon	ENSMUSG00000039789	ProperStrand	4	2	-inf
chr3	123505335	123505427	LINE	L1VL4	L1	chr3L1VL4123505319	ProperStrand	2	chr3	123505169	123505344	LTR	RLTR9E	ERVK	chr3RLTR9E123504934	NonProperStrand	2	2	-inf
chr9	123461802	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	136364887	136364970	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	24	-21.3315
chr1	97767413	97767486	LINE	L1MC1	L1	chr1L1MC197767153	ProperStrand	1	chr17	39846453	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	146241829	146241884	LTR	MTE2a	MaLR	chr5MTE2a146241762	ProperStrand	1	chr5	146241310	146241375	SINE	B4A	B4	chr5B4A146241236	NonProperStrand	3	1	-inf
chr1	135563990	135564080	SINE	B1F2	Alu	chr1B1F2135563997	NonProperStrand	1	chr1	135563829	135563929	SINE	ID_B1	B4	chr1ID_B1135563801	ProperStrand	1	1	-inf
chr2	53224733	53224842	LINE	L1Md_T	L1	chr2L1Md_T53220319	NonProperStrand	1	chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	121133329	121133419	LINE	L1_Mur3	L1	chr10L1_Mur3121133250	NonProperStrand	1	chr10	121133154	121133254	SINE	B2_Mm1t	B2	chr10B2_Mm1t121133092	ProperStrand	1	1	-inf
chr15	53262700	53262748	LINE	Lx	L1	chr15Lx53261924	ProperStrand	1	chr15	53263433	53263471	LINE	Lx7	L1	chr15Lx753263343	ProperStrand	21	1	-inf
chr19	41620245	41620275	protein_coding	Lcor	intron	ENSMUSG00000025019	ProperStrand	67	chr13	64241344	64241384	protein_coding	Zfp367	intron	ENSMUSG00000044934	ProperStrand	9	1	-15.6969
chr5	31206121	31206163	protein_coding	Agbl5	intron	ENSMUSG00000029165	NonProperStrand	37	chr13	97190550	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0707
chr4	155195619	155195677	protein_coding	Ccnl2	intron	ENSMUSG00000029068	NonProperStrand	19	chr12	80169430	80169509	protein_coding	Plekhh1	exon	ENSMUSG00000060716	NonProperStrand	24	1	-16.2090
chr12	99645565	99645665	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr7	113218037	113218127	processed_transcript	RP23-466I14.1	.	ENSMUSG00000093378	ProperStrand	23	1	-14.0359
chr5	147505010	147505110	SINE	B2_Mm2	B2	chr5B2_Mm2147505033	NonProperStrand	2	chr5	147504916	147505006	SINE	PB1D10	Alu	chr5PB1D10147504916	NonProperStrand	2	2	-inf
chr15	45866487	45866577	LINE	L1MC4	L1	chr15L1MC445866443	ProperStrand	1	chr15	45866722	45866822	LINE	L1MC4	L1	chr15L1MC445866676	ProperStrand	1	1	-inf
chr9	123461822	123462007	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr1	55078181	55080291	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	3	-5.7624
chr2	130276248	130276333	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	132	chr13	74331422	74331440	protein_coding	Exoc3	intron	ENSMUSG00000034152	ProperStrand	24	1	-12.2951
chr17	39847531	39847586	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	105344996	105345070	SINE	MIRb	MIR	chr12MIRb105344944	NonProperStrand	1	1	-inf
chr6	89502153	89502243	protein_coding	Chchd6	intron	ENSMUSG00000030086	ProperStrand	188	chr14	55719850	55720374	protein_coding	Ap1g2	intron	ENSMUSG00000040701	ProperStrand	20	1	-11.9590
chr18	34863929	34863980	protein_coding	Gfra3	intron	ENSMUSG00000024366	NonProperStrand	18	chr13	97190547	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	3	-17.0718
chr10	105405128	105405232	LINE	L1Md_T	L1	chr10L1Md_T105404435	ProperStrand	1	chr10	105399924	105399953	LINE	L1_Mur2	L1	chr10L1_Mur2105399819	ProperStrand	1	1	-inf
chr13	43229381	43229471	protein_coding-noncoding	Phactr1	utr5	ENSMUSG00000054728	NonProperStrand	2	chr13	43229254	43229354	protein_coding	Phactr1	intron	ENSMUSG00000054728	NonProperStrand	24	2	-inf
chr17	39847658	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	53197925	53197993	SINE	B3	B2	chr15B353197843	ProperStrand	1	1	-inf
chr13	40897107	40897159	LINE	L1_Mur2	L1	chr13L1_Mur240896260	ProperStrand	2	chr13	97190569	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr15	97040385	97040436	SINE	B4A	B4	chr15B4A97040389	ProperStrand	1	chr9	123461930	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	133338575	133338655	SINE	B2_Mm1t	B2	chr4B2_Mm1t133338539	NonProperStrand	2	chr9	123461871	123461941	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr3	144597259	144597316	LINE	Lx3A	L1	chr3Lx3A144597116	NonProperStrand	3	chr3	144577736	144590667	protein_coding	AI747448	intron	ENSMUSG00000074195	NonProperStrand	15	3	-inf
chr13	112578190	112578266	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr15	34257523	34257599	protein_coding	Matn2	intron	ENSMUSG00000022324	ProperStrand	45	1	-4.7570
chr13	95082398	95082461	LTR	ORR1B1	MaLR	chr13ORR1B195082333	NonProperStrand	1	chr13	95070654	95070733	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n95070587	NonProperStrand	2	1	-inf
chr11	20007321	20007379	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	chr1	118459205	118459253	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	NonProperStrand	63	1	-9.6446
chr11	109011685	109011712	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr18	35395972	35396089	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	1	-4.7665
chr17	83592928	83593018	DNA	URR1B	MER1_type	chr17URR1B83592899	NonProperStrand	1	chr17	83593221	83593321	SINE	ID_B1	B4	chr17ID_B183593156	NonProperStrand	1	1	-inf
chr9	40804020	40804064	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr9	65201725	65201784	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-6.4866
chr7	47188354	47188454	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	chr1	102246101	102246191	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	ProperStrand	27	1	-15.6852
chr8	101522964	101523054	LINE	Lx4B	L1	chr8Lx4B101522788	NonProperStrand	1	chr8	101606593	101606693	protein_coding	Cdh8	intron	ENSMUSG00000036510	NonProperStrand	13	1	-inf
chr17	39846657	39846768	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	8681620	8681639	protein_coding	Flnb	intron	ENSMUSG00000025278	NonProperStrand	2	1	-5.3533
chr6	3201437	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	6157451	6157527	protein_coding	Tulp4	intron	ENSMUSG00000034377	ProperStrand	56	1	-3.0187
chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	67368374	67368392	protein_coding	Klhl2	intron	ENSMUSG00000031605	NonProperStrand	11	1	-4.1956
chr6	58830904	58831004	protein_coding	Herc3	intron	ENSMUSG00000029804	ProperStrand	21	chr6	61179512	61179602	protein_coding	Fam190a	intron	ENSMUSG00000039578	NonProperStrand	37	1	-15.1371
chr10	119597331	119597421	protein_coding-noncoding	Irak3	utr3	ENSMUSG00000020227	NonProperStrand	2	chr10	119597541	119597641	protein_coding	Irak3	intron	ENSMUSG00000020227	NonProperStrand	17	1	-20.8675
chr11	109011656	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	100998050	101083434	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	ProperStrand	245	2	-5.8097
chr17	39847244	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	99575511	99575529	protein_coding	Pibf1	intron	ENSMUSG00000022064	NonProperStrand	4	1	-4.8204
chr11	113901597	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	chr6	85628452	85628578	protein_coding	Alms1	exon	ENSMUSG00000063810	ProperStrand	47	1	-10.9467
chr3	132765377	132765437	protein_coding	Ints12	exon	ENSMUSG00000028016	ProperStrand	11	chr5	138298542	138298818	protein_coding	Pilrb1	exon	ENSMUSG00000066684	NonProperStrand	29	1	-16.9195
chr13	88429857	88429878	LINE	Lx	L1	chr13Lx88429198	ProperStrand	2	chr17	31651654	31651685	protein_coding	Wdr4	intron	ENSMUSG00000024037	ProperStrand	95	1	-18.6969
chr5	125382050	125382099	protein_coding-noncoding	Zfp664	utr5	ENSMUSG00000079215	NonProperStrand	4	chr5	125381574	125381654	protein_coding	Zfp664	intron	ENSMUSG00000079215	NonProperStrand	3	1	-inf
chr4	43492784	43492812	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr7	111076060	111076148	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-6.2684
chr5	146260994	146261025	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrY	1144386	1144471	LTR	IAPLTR3-int	ERVK	chrYIAPLTR3-int1140090	NonProperStrand	3	1	-11.3685
chr1	150516107	150516197	LINE	Lx9	L1	chr1Lx9150515935	NonProperStrand	1	chr1	150516386	150516486	LTR	MLT1-int	MaLR	chr1MLT1-int150516372	NonProperStrand	1	1	-inf
chr9	105058285	105058312	LINE	Lx5	L1	chr9Lx5105057869	NonProperStrand	2	chr17	39846306	39846374	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr4	101353656	101353716	LINE	L1Md_F2	L1	chr4L1Md_F2101352950	NonProperStrand	2	chr9	123462081	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr10	128337763	128337806	SINE	B1_Mus1	Alu	chr10B1_Mus1128337636	NonProperStrand	1	chr17	30638148	30638181	protein_coding	Btbd9	intron	ENSMUSG00000062202	NonProperStrand	156	1	-inf
chr10	86704301	86705316	LTR	RMER6A	ERVK	chr10RMER6A86704253	ProperStrand	7	chr10	86704369	86705422	SINE	B3	B2	chr10B386705257	ProperStrand	7	5	-inf
chr11	26787784	26787820	LINE	Lx	L1	chr11Lx26787732	NonProperStrand	1	chr17	39847737	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	58862634	58862653	protein_coding	1700019N19Rik	intron	ENSMUSG00000026931	NonProperStrand	1	chr2	5379276	5379350	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr5	91980916	91980968	protein_coding	Parm1	intron	ENSMUSG00000034981	ProperStrand	7	chr17	33843236	33843278	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-17.6959
chr8	11579981	11580071	LTR	LTRIS_Mus	ERV1	chr8LTRIS_Mus11579997	NonProperStrand	1	chr8	11579744	11579843	SINE	B2_Mm2	B2	chr8B2_Mm211579770	ProperStrand	1	1	-inf
chr6	3201472	3201568	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	70912979	70913616	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	NonProperStrand	45	2	-5.8388
chr17	39848669	39848777	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	97983695	97983718	protein_coding	Fbxl20	intron	ENSMUSG00000020883	NonProperStrand	3	2	-13.0806
chr5	146261159	146261214	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	86718751	86718797	protein_coding	Anxa4	intron	ENSMUSG00000029994	ProperStrand	40	1	-5.8562
chr5	110399442	110399519	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int110397161	ProperStrand	13	chr5	110400209	110400283	LTR	RMER16-int	ERVK	chr5RMER16-int110400131	ProperStrand	1	1	-inf
chr14	118672646	118672752	LTR	RLTR11B	ERVK	chr14RLTR11B118672618	NonProperStrand	2	chr17	39847531	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr2	20890715	20890815	antisense	Gm13375	.	ENSMUSG00000075514	NonProperStrand	1	chr2	20889066	20889156	protein_coding	Arhgap21	utr5	ENSMUSG00000036591	ProperStrand	30	1	-inf
chr19	5802580	5802632	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr8	87853982	87854070	protein_coding	Mylk3	intron	ENSMUSG00000031698	ProperStrand	57	2	-7.5463
chr6	88023682	88023772	SINE	ID_B1	B4	chr6ID_B188023697	NonProperStrand	6	chr6	88023557	88023658	SINE	PB1D7	Alu	chr6PB1D788023581	NonProperStrand	6	6	-inf
chr13	44869579	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr17	23808111	23808139	protein_coding	Thoc6	intron	ENSMUSG00000041319	NonProperStrand	57	1	-4.5907
chr15	65851131	65851231	protein_coding	Kcnq3	intron	ENSMUSG00000056258	ProperStrand	12	chr17	47344292	47344382	protein_coding	Trerf1	intron	ENSMUSG00000064043	ProperStrand	109	1	-14.1073
chr2	119600091	119600162	protein_coding	Rpap1	intron	ENSMUSG00000034032	NonProperStrand	24	chr7	99119091	99119152	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-9.2705
chr12	110694238	110694325	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	chr3	79185518	79185559	protein_coding	Gm17359	intron	ENSMUSG00000091685	NonProperStrand	22	1	-11.2255
chr6	136804331	136804374	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	chr6	72712902	72713014	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	1	-10.2756
chr2	10431206	10431306	miRNA	AL772216.1	.	ENSMUSG00000077095	ProperStrand	1	chr2	10431080	10431170	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-inf
chr1	87364134	87364224	LINE	L1Md_F	L1	chr1L1Md_F87361511	ProperStrand	2	chr1	87365197	87374016	LTR	RLTR6_Mm	ERV1	chr1RLTR6_Mm87365183	NonProperStrand	1	1	-inf
chr12	110449872	110449991	LINE	L1VL2	L1	chr12L1VL2110449176	ProperStrand	8	chr5	17776749	17776776	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-14.2452
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr9	14834043	14834134	protein_coding	Panx1	intron	ENSMUSG00000031934	NonProperStrand	29	1	-11.2765
chr17	39846682	39846782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	75850172	75850262	SINE	B3	B2	chr7B375850163	NonProperStrand	1	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	67267096	67267154	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	1	-4.4159
chr13	81106507	81106526	lincRNA	9330111N05Rik	intron	ENSMUSG00000085266	NonProperStrand	6	chr14	28198355	28198408	protein_coding	Arhgef3	intron	ENSMUSG00000021895	ProperStrand	16	1	-19.7048
chr17	27057633	27073156	protein_coding	Phf1	intron	ENSMUSG00000024193	ProperStrand	18	chr17	27057554	27057644	protein_coding	Kifc5b	intron	ENSMUSG00000024301	ProperStrand	13	1	-17.6266
chr5	146279462	146279523	LINE	L1Md_F2	L1	chr5L1Md_F2146277668	NonProperStrand	11	chr15	37267278	37267331	protein_coding	Grhl2	intron	ENSMUSG00000022286	ProperStrand	17	1	-17.9409
chr11	59212203	59212247	DNA	Tigger7	MER2_type	chr11Tigger759212203	NonProperStrand	7	chr5	17776752	17776778	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-14.5338
chr3	63718920	63718948	protein_coding	E130311K13Rik	utr3	ENSMUSG00000048581	ProperStrand	1	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-inf
chr7	113539283	113539412	LINE	L1_Mur2	L1	chr7L1_Mur2113537931	NonProperStrand	4	chr7	113539399	113540604	LINE	MusHAL1	L1	chr7MusHAL1113539396	NonProperStrand	2	2	-inf
chr7	109520231	109520249	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr8	13368221	13368332	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	1	-7.1436
chr6	103821255	103821301	LINE	L1Md_F2	L1	chr6L1Md_F2103817973	NonProperStrand	1	chr17	39847830	39847886	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	10193568	10193608	protein_coding	Atf7ip2	intron	ENSMUSG00000039200	ProperStrand	34	chr1	134416322	134416352	protein_coding	Cntn2	intron	ENSMUSG00000053024	NonProperStrand	107	1	-12.0072
chr7	26405828	26405928	protein_coding-noncoding	Atp5sl	utr5	ENSMUSG00000057229	ProperStrand	1	chr1	59659852	59659887	protein_coding	Gm973	intron	ENSMUSG00000047361	NonProperStrand	30	1	-inf
chr4	150869361	150869415	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr2	37447982	37448026	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	1	-7.6230
chr5	50055310	50055400	LTR	ORR1E-int	MaLR	chr5ORR1E-int50055292	ProperStrand	2	chr5	50055208	50055308	LTR	ORR1E	MaLR	chr5ORR1E50054953	ProperStrand	1	1	-inf
chr4	25251426	25251941	LINE	L1_Mus2	L1	chr4L1_Mus225251260	ProperStrand	2	chr17	39846353	39846443	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	24569849	24569931	protein_coding	Eci1	intron	ENSMUSG00000024132	ProperStrand	17	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.5018
chr15	73592652	73592742	protein_coding-noncoding	Gm628	utr3	ENSMUSG00000072487	ProperStrand	5	chr15	73592540	73592640	protein_coding	Gm628	intron	ENSMUSG00000072487	ProperStrand	110	1	-15.9801
chr13	44752191	44752234	SINE	B1_Mur4	Alu	chr13B1_Mur444752200	NonProperStrand	1	chr16	35818839	35818901	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	1	-inf
chr11	11814493	11814512	LTR	RLTR13B3	ERVK	chr11RLTR13B311813831	ProperStrand	1	chr5	114851974	114852036	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr2	32204062	32204131	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	chr2	122255922	122256001	protein_coding	Slc28a2	intron	ENSMUSG00000027219	ProperStrand	13	1	-12.4982
chr2	27040617	27040717	SINE	B4	B4	chr2B427040541	ProperStrand	1	chr2	27040391	27040481	SINE	ID_B1	B4	chr2ID_B127040314	ProperStrand	1	1	-inf
chr17	39846430	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	161882133	161882207	SINE	B1_Mur2	Alu	chr1B1_Mur2161882142	ProperStrand	1	1	-inf
chr19	24183005	24183083	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	127	chr2	150675613	150675630	protein_coding	Abhd12	intron	ENSMUSG00000032046	ProperStrand	26	1	-12.2095
chr3	121337703	121337796	LTR	MLT1A1	MaLR	chr3MLT1A1121337612	ProperStrand	1	chr3	121337498	121337529	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n121337506	ProperStrand	1	1	-inf
chr8	3671348	3672201	antisense	2400009B08Rik	.	ENSMUSG00000089665	ProperStrand	1	chr6	6127568	6127628	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	1	-inf
chr5	32913159	32917953	antisense	Gm15614	.	ENSMUSG00000085234	NonProperStrand	24	chr5	32917966	32918066	protein_coding	Yes1	intron	ENSMUSG00000014932	ProperStrand	31	6	-inf
chr2	25272047	25272306	LINE	L4	RTE	chr2L425272056	ProperStrand	1	chr18	9980416	9980516	protein_coding	Thoc1	intron	ENSMUSG00000024287	ProperStrand	14	1	-inf
chr17	39846580	39846708	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	19806539	19806557	Other	RMER1B	Other	chr2RMER1B19806250	ProperStrand	1	1	-inf
chr3	88098867	88098957	protein_coding-noncoding	1700021C14Rik	utr3	ENSMUSG00000010538	NonProperStrand	1	chr3	88102001	88104093	protein_coding	Cct3	intron	ENSMUSG00000001416	ProperStrand	26	1	-inf
chr13	111952438	111952528	LINE	Lx	L1	chr13Lx111952115	ProperStrand	1	chr17	80927108	80927208	protein_coding	Cdkl4	intron	ENSMUSG00000033966	NonProperStrand	6	1	-inf
chr1	36807933	36807977	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int36807244	NonProperStrand	5	chr4	132310238	132310292	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-14.8930
chr13	47100223	47101632	LTR	RMER19B	ERVK	chr13RMER19B47100093	NonProperStrand	2	chr1	34063033	34063103	protein_coding	Dst	exon	ENSMUSG00000026131	ProperStrand	828	1	-14.2332
chr5	67294043	67294079	protein_coding	Limch1	intron	ENSMUSG00000037736	ProperStrand	57	chr9	15315789	15315835	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-10.5578
chr1	118996328	118996428	Low_complexity	GA-rich	Low_complexity	chr1GA-rich118996279	NonProperStrand	2	chr1	118996462	118996552	Simple_repeat	(GGAA)n	Simple_repeat	chr1(GGAA)n118996406	NonProperStrand	2	2	-inf
chr1	72162368	72162417	LINE	L1_Mus2	L1	chr1L1_Mus272162208	NonProperStrand	1	chr17	39846941	39847005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	6669275	6669359	LTR	MTD	MaLR	chr11MTD6669134	NonProperStrand	1	chr5	122733921	122733995	SINE	ID_B1	B4	chr5ID_B1122733898	NonProperStrand	1	1	-inf
chr1	104663756	104663846	LINE	Lx8	L1	chr1Lx8104663741	NonProperStrand	1	chr1	104663407	104663507	Simple_repeat	(TTCTCC)n	Simple_repeat	chr1(TTCTCC)n104663415	NonProperStrand	1	1	-inf
chr1	89143807	89143867	SINE	B1_Mm	Alu	chr1B1_Mm89143813	ProperStrand	3	chr11	117682740	117682810	protein_coding	RP23-268N22.1	intron	ENSMUSG00000093485	ProperStrand	53	1	-18.5016
chr13	119690657	119690757	LINE	L1M4b	L1	chr13L1M4b119690657	ProperStrand	1	chr13	119690513	119690603	LTR	MER70B	ERVL	chr13MER70B119690164	ProperStrand	1	1	-inf
chr9	43746916	43747006	SINE	B4A	B4	chr9B4A43746761	ProperStrand	6	chr9	43747004	43747156	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n43747033	ProperStrand	10	6	-inf
chr13	63261787	63261866	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	chr11	69917440	69917617	protein_coding	Asgr2	intron	ENSMUSG00000040963	NonProperStrand	118	1	-7.4764
chr3	68533565	68533655	LINE	L1Md_T	L1	chr3L1Md_T68528745	ProperStrand	12	chr3	68516489	68516589	LTR	RLTR17	ERVK	chr3RLTR1768516434	NonProperStrand	2	1	-inf
chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	111971953	111972070	LTR	RMER19A	ERVK	chr8RMER19A111971892	ProperStrand	2	1	-5.3533
chr18	50511784	50511884	Other	RMER1C	Other	chr18RMER1C50511775	ProperStrand	1	chr18	50511990	50512080	Other	RMER1C	Other	chr18RMER1C50511937	NonProperStrand	1	1	-inf
chr6	54909360	54909460	protein_coding	Nod1	intron	ENSMUSG00000038058	NonProperStrand	12	chr6	54842442	54842532	protein_coding	Znrf2	utr3	ENSMUSG00000058446	ProperStrand	19	1	-17.5929
chr1	87561099	87561199	protein_coding	Sp100	intron	ENSMUSG00000026222	NonProperStrand	1	chr1	87499401	87499491	protein_coding	Sp140	intron	ENSMUSG00000070031	ProperStrand	2	1	-inf
chr7	68090363	68090453	LINE	Lx9	L1	chr7Lx968090383	ProperStrand	9	chr12	109646688	109646748	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-11.6708
chr17	39846461	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	25369825	25369846	lincRNA	E330010L02Rik	intron	ENSMUSG00000086959	NonProperStrand	1	1	-inf
chr13	65930463	65930529	lincRNA	Gm7822	intron	ENSMUSG00000091975	ProperStrand	8	chr5	115490321	115490397	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	4	-inf
chr2	20790807	20790882	protein_coding	Arhgap21	intron	ENSMUSG00000036591	NonProperStrand	34	chr19	27396358	27398942	protein_coding	Kcnv2	intron	ENSMUSG00000047298	NonProperStrand	20	1	-15.4106
chr11	42629846	42629864	LINE	L1MC4a	L1	chr11L1MC4a42629801	NonProperStrand	1	chr11	109011820	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	1	-inf
chr16	4065302	4065365	protein_coding	Trap1	exon	ENSMUSG00000005981	ProperStrand	68	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.7250
chr1	138559365	138559465	LINE	HAL1-3A_ME	L1	chr1HAL1-3A_ME138559298	ProperStrand	3	chr1	138559487	138559577	Low_complexity	CT-rich	Low_complexity	chr1CT-rich138559484	NonProperStrand	3	3	-inf
chr10	12444615	12444668	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	chr5	31244958	31245772	protein_coding	Cgref1	intron	ENSMUSG00000029161	NonProperStrand	4	1	-15.8865
chr11	19975635	19975710	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	chr5	142650339	142650401	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-6.5002
chr4	50588429	50588519	LTR	RMER19C	ERVK	chr4RMER19C50588219	ProperStrand	1	chr10	122565918	122566018	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-inf
chr2	173751600	173751689	LINE	Lx7	L1	chr2Lx7173751049	NonProperStrand	1	chr2	173751630	173751730	LINE	Lx7	L1	chr2Lx7173751621	NonProperStrand	1	1	-inf
chr11	58346352	58346442	protein_coding	Olfr330	intron	ENSMUSG00000050818	NonProperStrand	3	chr11	58346439	58346539	pseudogene	Gm12255	.	ENSMUSG00000083501	NonProperStrand	4	3	-inf
chr5	110430720	110430758	protein_coding	Zfp932	intron	ENSMUSG00000066613	NonProperStrand	61	chr14	27042780	27042832	protein_coding	Gm2135	intron	ENSMUSG00000092159	ProperStrand	34	1	-13.1368
chr8	14891693	14891827	protein_coding	Cln8	intron	ENSMUSG00000026317	ProperStrand	13	chr15	82963290	82963310	protein_coding	Poldip3	intron	ENSMUSG00000041815	NonProperStrand	3	1	-22.9476
chr14	54388684	54388712	LINE	L1M2	L1	chr14L1M254388473	NonProperStrand	3	chr6	122323405	122323423	Low_complexity	G-rich	Low_complexity	chr6G-rich122323372	NonProperStrand	3	1	-20.2168
chr5	52810676	52810788	LTR	MTE2b	MaLR	chr5MTE2b52810671	ProperStrand	1	chr5	52812426	52812451	SINE	B4A	B4	chr5B4A52812415	ProperStrand	1	1	-inf
chr7	12930815	12930848	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr15	55212319	55218203	protein_coding	Col14a1	intron	ENSMUSG00000022371	ProperStrand	77	1	-10.9423
chr15	82937478	82937524	protein_coding-noncoding	Serhl	utr5	ENSMUSG00000058586	NonProperStrand	14	chr15	82928435	82928550	protein_coding	Serhl	intron	ENSMUSG00000058586	NonProperStrand	60	2	-inf
chr16	30456346	30456436	LTR	RMER19C	ERVK	chr16RMER19C30456237	NonProperStrand	1	chr16	30456162	30456262	Simple_repeat	(TCCA)n	Simple_repeat	chr16(TCCA)n30456123	NonProperStrand	1	1	-inf
chr12	84465720	84465843	LINE	L1MEf	L1	chr12L1MEf84465626	ProperStrand	3	chr11	79351475	79351501	protein_coding	Nf1	intron	ENSMUSG00000020716	ProperStrand	21	1	-19.5588
chr12	78350926	78351069	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr11	113901597	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-4.3850
chr13	103110201	103110248	LINE	L1M4	L1	chr13L1M4103109682	ProperStrand	1	chr2	22744845	22744879	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-inf
chr17	39847475	39847526	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	55105470	55105519	SINE	B1_Mur4	Alu	chr14B1_Mur455105382	NonProperStrand	2	2	-inf
chr17	34952014	34952050	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr11	48803920	48804180	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-7.8839
chr10	108589540	108589630	LINE	Lx7	L1	chr10Lx7108589528	NonProperStrand	1	chr10	108589335	108589435	LTR	MTC	MaLR	chr10MTC108589130	NonProperStrand	1	1	-inf
chr17	39843827	39843879	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	128624899	128624973	protein_coding	Mertk	intron	ENSMUSG00000014361	NonProperStrand	15	1	-5.6278
chr17	39846931	39846989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	52138637	52138685	miRNA	AL845355.1	.	ENSMUSG00000089609	ProperStrand	1	1	-inf
chr14	30559772	30559850	LTR	MT2A	ERVL	chr14MT2A30559732	ProperStrand	4	chr11	6297646	6297714	protein_coding-noncoding	Zmiz2	utr5	ENSMUSG00000041164	ProperStrand	2	2	-inf
chr5	136511538	136511604	LTR	MTC	MaLR	chr5MTC136511257	NonProperStrand	1	chr5	136511628	136511722	SINE	B1_Mur3	Alu	chr5B1_Mur3136511606	NonProperStrand	1	1	-inf
chr4	118367378	118367478	LINE	L1MEg	L1	chr4L1MEg118367308	ProperStrand	1	chr4	118367579	118367669	SINE	B3	B2	chr4B3118367509	NonProperStrand	1	1	-inf
chr18	87070093	87070112	LINE	L1Md_T	L1	chr18L1Md_T87069075	ProperStrand	1	chr17	39847028	39847163	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	11767352	11767453	LINE	L1_Mur2	L1	chr2L1_Mur211767324	NonProperStrand	2	chr2	11767467	11767557	LINE	Lx4A	L1	chr2Lx4A11767456	NonProperStrand	2	2	-inf
chr7	4145502	4145601	LTR	IAPEz-int	ERVK	chr7IAPEz-int4144938	NonProperStrand	67	chr10	116501280	116504038	SINE	B1F1	Alu	chr10B1F1116501290	ProperStrand	1	1	-inf
chr13	9613029	9613119	protein_coding	Dip2c	intron	ENSMUSG00000048264	NonProperStrand	18	chr13	9604435	9604535	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-11.9918
chr11	107178941	107178981	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	chr1	132504428	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	1	-10.2716
chr13	44869605	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	167481621	167481681	protein_coding	Gm20431	intron	ENSMUSG00000089739	NonProperStrand	53	1	-4.7306
chr2	22744854	22744878	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	17124129	17124190	protein_coding	2610318N02Rik	intron	ENSMUSG00000049916	ProperStrand	11	1	-10.2537
chr6	113006922	113006944	protein_coding	Thumpd3	intron	ENSMUSG00000030264	NonProperStrand	1	chr12	109634377	109634492	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-inf
chrX	162470006	162470106	LINE	Lx	L1	chrXLx162469884	ProperStrand	1	chrX	162470135	162470225	LINE	Lx8	L1	chrXLx8162470092	NonProperStrand	1	1	-inf
chr16	52949411	52949501	LINE	L1Md_T	L1	chr16L1Md_T52949086	ProperStrand	1	chr16	52949554	52949654	LINE	Lx9	L1	chr16Lx952949536	NonProperStrand	1	1	-inf
chr17	39847028	39847128	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101546616	101546644	Simple_repeat	(TTTC)n	Simple_repeat	chr11(TTTC)n101546612	NonProperStrand	1	1	-inf
chr1	192745661	192745687	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.0143
chr3	35849471	35855111	LINE	L1M4	L1	chr3L1M435848640	ProperStrand	2	chr3	35839081	35839171	antisense	Gm15952	.	ENSMUSG00000085655	ProperStrand	7	2	-inf
chr17	25963735	25963836	protein_coding	Wdr24	intron	ENSMUSG00000025737	NonProperStrand	22	chr7	35518763	35518853	protein_coding	Chst8	intron	ENSMUSG00000060402	ProperStrand	71	1	-13.7207
chr9	110030122	110030222	SINE	B1_Mus1	Alu	chr9B1_Mus1110030150	NonProperStrand	1	chr9	110030013	110030103	SINE	ID_B1	B4	chr9ID_B1110030014	NonProperStrand	1	1	-inf
chr5	123924771	123927001	LINE	L1_Mur1	L1	chr5L1_Mur1123924657	NonProperStrand	1	chr4	137650464	137650544	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-inf
chr5	146261024	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	104563726	104563792	protein_coding	Depdc7	intron	ENSMUSG00000027173	NonProperStrand	31	1	-6.3617
chr17	80463709	80463806	LTR	RMER21A	ERV1	chr17RMER21A80463370	NonProperStrand	1	chr17	80460359	80460416	protein_coding	Hnrpll	intron	ENSMUSG00000024095	ProperStrand	32	1	-inf
chr15	37751023	37751123	LINE	Lx7	L1	chr15Lx737750954	ProperStrand	1	chr15	37750831	37750921	LTR	ORR1B1	MaLR	chr15ORR1B137750791	NonProperStrand	1	1	-inf
chr4	3598073	3598173	LTR	MTEa	MaLR	chr4MTEa3597859	NonProperStrand	1	chr4	3597417	3597507	SINE	B3	B2	chr4B33597342	ProperStrand	1	1	-inf
chr6	88489064	88489155	LINE	L1_Mur3	L1	chr6L1_Mur388488504	NonProperStrand	6	chr6	88489174	88489274	SINE	B2_Mm2	B2	chr6B2_Mm288489170	ProperStrand	6	6	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr10	11153091	11153210	protein_coding	Epm2a	intron	ENSMUSG00000055493	ProperStrand	13	1	-13.7180
chr3	8612628	8612645	LTR	ORR1C2	MaLR	chr3ORR1C28612354	NonProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr6	59644852	59644952	LTR	IAPEz-int	ERVK	chr6IAPEz-int59644563	NonProperStrand	1	chr16	98063109	98063199	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	1	-inf
chr16	30344545	30347648	protein_coding	Atp13a3	intron	ENSMUSG00000022533	ProperStrand	59	chr9	72697293	72697339	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-8.6861
chr10	43911657	43911698	LINE	Lx2A1	L1	chr10Lx2A143910173	ProperStrand	3	chr17	39846812	39846881	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	70963673	70963759	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr19	45916676	45916747	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	1	-4.4422
chr17	3529312	3529368	protein_coding	Tfb1m	intron	ENSMUSG00000036983	ProperStrand	25	chr13	9597837	9597893	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-11.3196
chr4	11190041	11190100	protein_coding	Dpy19l4	utr3	ENSMUSG00000045205	ProperStrand	21	chr2	41344451	41344468	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-13.4506
chr17	39848124	39848157	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	13669077	13669108	LTR	RLTR23	ERV1	chrXRLTR2313668708	NonProperStrand	3	1	-7.3534
chr10	18623833	18623933	LINE	L1_Mus1	L1	chr10L1_Mus118622324	NonProperStrand	5	chr10	18626636	18626726	LTR	RMER3D-int	ERVK	chr10RMER3D-int18626563	NonProperStrand	7	5	-inf
chr12	83547245	83547310	protein_coding	Sipa1l1	intron	ENSMUSG00000042700	ProperStrand	61	chr16	30958688	30958773	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	1	-8.7011
chr3	115970995	115971031	LINE	Lx9	L1	chr3Lx9115970869	NonProperStrand	1	chr17	39847804	39847882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	23996331	24003208	protein_coding	1110058L19Rik	intron	ENSMUSG00000026154	ProperStrand	2	chr9	42606416	42606493	protein_coding	Grik4	intron	ENSMUSG00000032017	ProperStrand	153	1	-17.5909
chr17	39847034	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	106518924	106518945	SINE	B4A	B4	chr8B4A106518853	NonProperStrand	1	1	-inf
chr15	41789450	41789560	LINE	L1Md_F2	L1	chr15L1Md_F241789227	ProperStrand	1	chr9	123461976	123462017	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	124275363	124275401	SINE	B3A	B2	chr5B3A124275322	ProperStrand	1	chr9	123461948	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	3201470	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	57960078	57960151	protein_coding	Cryl1	intron	ENSMUSG00000021947	ProperStrand	31	1	-4.1133
chr10	122565281	122565371	protein_coding	Usp15	utr3	ENSMUSG00000020124	ProperStrand	47	chr4	11300981	11301081	protein_coding	Esrp1	intron	ENSMUSG00000040728	ProperStrand	8	1	-16.6700
chr1	175442192	175442292	LINE	Lx2	L1	chr1Lx2175442214	ProperStrand	1	chr1	175521594	175521684	protein_coding	Pydc4	intron	ENSMUSG00000073491	ProperStrand	1	1	-inf
chr17	39847843	39847919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	116796143	116796209	protein_coding	Btbd19	intron	ENSMUSG00000073771	NonProperStrand	4	1	-3.7035
chr11	77787808	77787966	protein_coding-noncoding	Sez6	utr5	ENSMUSG00000000632	ProperStrand	8	chr11	77787721	77787815	protein_coding	Sez6	exon	ENSMUSG00000000632	ProperStrand	109	6	-inf
chr5	141666622	141666712	LTR	MTE2b	MaLR	chr5MTE2b141666499	ProperStrand	1	chr5	141666366	141666466	SINE	B4A	B4	chr5B4A141666326	NonProperStrand	1	1	-inf
chr4	86788984	86789011	protein_coding	Slc24a2	intron	ENSMUSG00000037996	NonProperStrand	54	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-12.0124
chr9	123462078	123462150	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	74629980	74630042	protein_coding	Ly6k	intron	ENSMUSG00000044678	ProperStrand	1	1	-inf
chr17	39847766	39847866	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	135157645	135157735	protein_coding	8430419L09Rik	intron	ENSMUSG00000030207	NonProperStrand	4	1	-3.7035
chr2	59214953	59215043	LINE	L1MA6	L1	chr2L1MA659214505	ProperStrand	16	chr2	59215071	59215171	SINE	B3	B2	chr2B359215100	ProperStrand	1	1	-inf
chr2	164106118	164106208	LINE	L1_Mur3	L1	chr2L1_Mur3164106139	ProperStrand	1	chr2	164106295	164106395	LINE	Lx9	L1	chr2Lx9164106308	ProperStrand	1	1	-inf
chr12	73299746	73299793	LTR	RMER17A	ERVK	chr12RMER17A73299645	ProperStrand	3	chr3	88933604	88936194	SINE	RSINE1	B4	chr3RSINE188933589	ProperStrand	1	1	-inf
chr11	51606436	51606671	SINE	B1_Mus1	Alu	chr11B1_Mus151606460	ProperStrand	13	chr11	51605600	51606468	SINE	B3A	B2	chr11B3A51606308	ProperStrand	14	10	-22.9113
chr14	11751318	11751345	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	chr2	104651641	104651710	protein_coding	Qser1	intron	ENSMUSG00000074994	NonProperStrand	35	1	-8.9557
chr13	91181285	91181374	protein_coding	Atg10	intron	ENSMUSG00000021619	ProperStrand	32	chr9	75405538	75405580	protein_coding	Tmod3	intron	ENSMUSG00000058587	ProperStrand	73	1	-12.8992
chr11	62604523	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr5	115561485	115562436	protein_coding	Acads	intron	ENSMUSG00000029545	NonProperStrand	165	1	-10.8102
chr17	60873254	60873354	LINE	Lx3_Mus	L1	chr17Lx3_Mus60872329	ProperStrand	1	chr17	60873549	60873639	LTR	RLTR43A	ERVK	chr17RLTR43A60873524	NonProperStrand	1	1	-inf
chr5	63961410	63961500	LTR	RMER19B	ERVK	chr5RMER19B63960791	ProperStrand	4	chr1	16503420	16503520	protein_coding	Stau2	intron	ENSMUSG00000025920	ProperStrand	27	1	-19.4870
chr10	75518106	75519315	LTR	ETnERV2-int	ERVK	chr10ETnERV2-int75515293	ProperStrand	1	chr9	40203103	40203183	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-inf
chr17	34952275	34952310	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chrX	37808749	37808773	processed_transcript	Gm14643	.	ENSMUSG00000086157	ProperStrand	22	1	-12.6652
chr4	133957767	133957821	protein_coding	Pafah2	intron	ENSMUSG00000037366	ProperStrand	57	chr8	23227323	23229463	protein_coding	Nek5	intron	ENSMUSG00000037738	ProperStrand	19	2	-20.5063
chr17	39848688	39848741	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	156621797	156621840	LTR	RMER16-int	ERVK	chr2RMER16-int156621543	ProperStrand	1	1	-inf
chr3	41674554	41674631	LINE	L1Md_F2	L1	chr3L1Md_F241674171	ProperStrand	1	chr16	34097101	34097157	protein_coding	Kalrn	utr5	ENSMUSG00000061751	ProperStrand	253	1	-inf
chr1	179500476	179500497	SINE	B1_Mus1	Alu	chr1B1_Mus1179500415	ProperStrand	1	chr1	179498972	179499011	SINE	B2_Mm1t	B2	chr1B2_Mm1t179498876	NonProperStrand	1	1	-inf
chr13	21445175	21445289	LINE	L1_Mus1	L1	chr13L1_Mus121445166	ProperStrand	1	chr17	39847656	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	108299926	108300001	protein_coding	Ccdc46	intron	ENSMUSG00000020728	NonProperStrand	33	chr13	44858256	44858341	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-10.0307
chr4	99588279	99588379	protein_coding	Itgb3bp	intron	ENSMUSG00000028549	NonProperStrand	16	chr6	135191195	135191285	protein_coding	Gsg1	intron	ENSMUSG00000030206	ProperStrand	3	3	-inf
chr6	128016288	128016378	protein_coding	Tspan9	intron	ENSMUSG00000030352	ProperStrand	182	chr7	107597984	107598084	protein_coding	C2cd3	intron	ENSMUSG00000047248	ProperStrand	36	3	-inf
chr17	12975451	12975474	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	chr4	57247528	57247653	protein_coding	Ptpn3	intron	ENSMUSG00000038764	ProperStrand	95	1	-11.5486
chr17	39847011	39847046	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	52607898	52607941	LTR	ORR1A2	MaLR	chr6ORR1A252607653	NonProperStrand	1	1	-inf
chr17	39846815	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	120876986	120877004	protein_coding	Rassf3	intron	ENSMUSG00000025795	NonProperStrand	1	1	-inf
chr17	70963741	70963812	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	18915477	18915538	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	1	-5.0236
chr15	73705621	73705647	LTR	IAPEz-int	ERVK	chr15IAPEz-int73703943	NonProperStrand	2	chr17	39846736	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	93940367	93940416	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	chr9	118674951	118675009	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.4075
chr12	47408290	47408313	LTR	RLTR15	ERVK	chr12RLTR1547408291	NonProperStrand	1	chr5	146260994	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr18	36621718	36621808	SINE	PB1D9	Alu	chr18PB1D936621698	NonProperStrand	2	chr18	36621865	36621965	Simple_repeat	(TTCC)n	Simple_repeat	chr18(TTCC)n36621824	ProperStrand	2	2	-inf
chr6	31193857	31193972	lincRNA	2210408F21Rik	intron	ENSMUSG00000087380	NonProperStrand	67	chr16	23187869	23187892	processed_transcript	B630019A10Rik	.	ENSMUSG00000068463	NonProperStrand	1	1	-inf
chr4	139442722	139442806	LTR	ORR1D1	MaLR	chr4ORR1D1139442740	ProperStrand	3	chr17	35220339	35220413	protein_coding	Ly6g6f	exon	ENSMUSG00000034923	ProperStrand	6	1	-inf
chr1	149653425	149653442	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int149652500	ProperStrand	16	chr7	47188332	47188392	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	1	-15.1227
chr2	130276315	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	chr18	69685775	69685791	protein_coding	Tcf4	intron	ENSMUSG00000053477	NonProperStrand	22	1	-12.4731
chr17	39847659	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	68604554	68604668	LTR	RLTR44-int	ERVK	chr3RLTR44-int68603970	ProperStrand	4	1	-3.7035
chr17	22498232	22498332	protein_coding	Zfp944	utr5	ENSMUSG00000033972	ProperStrand	1	chr17	22498444	22498534	protein_coding	Zfp758	utr5	ENSMUSG00000044501	NonProperStrand	1	1	-inf
chr17	50920581	50920598	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr9	65196600	65196688	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-11.3067
chr17	39846896	39846933	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	122401621	122401676	SINE	PB1D7	Alu	chr8PB1D7122401612	NonProperStrand	2	1	-5.3533
chr17	39846747	39846790	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	150396178	150396241	LTR	IAP-d-int	ERVK	chrXIAP-d-int150395014	NonProperStrand	1	1	-inf
chr17	39847273	39847342	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	148930604	148933031	SINE	B4A	B4	chr6B4A148930562	ProperStrand	6	1	-3.9545
chr17	39846417	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	139943860	139959245	protein_coding	Fam53b	intron	ENSMUSG00000030956	NonProperStrand	73	9	-3.5919
chr17	39846921	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	71600427	71601235	LTR	MTC	MaLR	chr1MTC71600075	NonProperStrand	3	1	-4.3017
chr5	115614191	115614402	SINE	B2_Mm1a	B2	chr5B2_Mm1a115614247	NonProperStrand	3	chr5	115614078	115614168	SINE	B3	B2	chr5B3115614044	ProperStrand	4	3	-inf
chr1	12752835	12752852	protein_coding	Sulf1	intron	ENSMUSG00000016918	NonProperStrand	3	chr8	125560818	125560954	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-14.4043
chr19	37272435	37272535	protein_coding	Cpeb3	utr5	ENSMUSG00000039652	NonProperStrand	28	chr19	37731506	37731596	protein_coding	Exoc6	intron	ENSMUSG00000053799	ProperStrand	23	1	-15.5189
chr2	102333536	102333581	LINE	L1_Mus3	L1	chr2L1_Mus3102333277	NonProperStrand	2	chr2	102334027	102334080	LINE	Lx5	L1	chr2Lx5102333896	NonProperStrand	2	2	-inf
chr7	27822034	27822080	SINE	PB1D9	Alu	chr7PB1D927822043	ProperStrand	1	chr7	27821449	27821534	protein_coding	Cyp2a12	intron	ENSMUSG00000060407	ProperStrand	4	1	-inf
chr12	111578493	111578554	LINE	L1_Mus2	L1	chr12L1_Mus2111576093	ProperStrand	1	chr17	39846430	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847440	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	69911772	69911811	LTR	RLTR10C	ERVK	chr8RLTR10C69911616	NonProperStrand	3	1	-4.3512
chr5	122469426	122469489	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	chr16	44090356	44090434	protein_coding	Atp6v1a	intron	ENSMUSG00000052459	ProperStrand	36	1	-11.2823
chr15	82529378	82529478	LINE	Lx3B	L1	chr15Lx3B82528097	NonProperStrand	1	chr7	110172291	110172381	LINE	L1Md_F2	L1	chr7L1Md_F2110167401	NonProperStrand	1	1	-inf
chr10	78308150	78308211	LINE	L1Md_F2	L1	chr10L1Md_F278307691	ProperStrand	1	chr13	44869575	44869632	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr9	42467301	42467345	protein_coding	Grik4	intron	ENSMUSG00000032017	ProperStrand	153	chr2	24839645	24839747	protein_coding	Pnpla7	intron	ENSMUSG00000036833	NonProperStrand	78	1	-9.6170
chr1	174617141	174617168	DNA	Tigger9a	Tigger	chr1Tigger9a174616783	NonProperStrand	1	chr9	123461951	123461968	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	49905792	49905892	LTR	ORR1B2	MaLR	chr6ORR1B249905694	ProperStrand	2	chr6	49905078	49905168	LTR	RMER15	ERVL	chr6RMER1549904797	ProperStrand	1	1	-inf
chr8	114508979	114509049	protein_coding	Adat1	intron	ENSMUSG00000031949	NonProperStrand	66	chr16	90768083	90768269	protein_coding	Urb1	intron	ENSMUSG00000039929	ProperStrand	65	1	-11.6698
mmu-miR-1195	1	16	miRNA	mmu-miR-1195	.	mmu-miR-1195	ProperStrand	6	chr13	17718637	17718786	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	5	-21.0439
chr7	55802730	55802767	LTR	MERVL_2A-int	ERVL	chr7MERVL_2A-int55802294	NonProperStrand	1	chr13	97190561	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39847179	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	120934199	120934223	SINE	B3	B2	chr10B3120934062	NonProperStrand	1	1	-inf
chr12	111541799	111542271	LINE	Lx2B	L1	chr12Lx2B111541690	ProperStrand	2	chr12	111542279	111542750	LTR	RLTRETN_Mm	ERVK	chr12RLTRETN_Mm111542631	NonProperStrand	3	2	-inf
chr17	39847508	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	8724531	8724554	SINE	B1_Mus2	Alu	chr19B1_Mus28724406	ProperStrand	1	1	-inf
chr3	87080644	87080685	LINE	L1Md_F2	L1	chr3L1Md_F287080528	ProperStrand	2	chr3	87083081	87083185	LTR	ORR1A0	MaLR	chr3ORR1A087082813	ProperStrand	2	2	-inf
chr17	39846241	39847102	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	90395129	90395189	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	23	-5.8729
chr9	42966084	42966174	protein_coding	Pou2f3	intron	ENSMUSG00000032015	ProperStrand	43	chr13	97190561	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.7739
chr10	82403668	82403761	LTR	IAPEz-int	ERVK	chr10IAPEz-int82403467	ProperStrand	2	chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr3	133955218	133955236	LTR	RMER17D2	ERVK	chr3RMER17D2133954650	NonProperStrand	3	chr13	97190580	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr3	152766957	152767047	SINE	MIR	MIR	chr3MIR152766889	NonProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr17	39847663	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	27013152	27013242	SINE	B3	B2	chr5B327013110	NonProperStrand	1	1	-inf
chr2	94789102	94789202	LTR	ORR1B1-int	MaLR	chr2ORR1B1-int94789084	ProperStrand	1	chr2	94788987	94789077	LTR	ORR1B1	MaLR	chr2ORR1B194788713	ProperStrand	1	1	-inf
chr17	39843024	39843079	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr14	32188355	32188460	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	NonProperStrand	15	1	-8.1613
chr19	14517946	14564432	protein_coding	Tle4	intron	ENSMUSG00000024642	ProperStrand	76	chr4	131941594	131941670	protein_coding	Phactr4	intron	ENSMUSG00000066043	ProperStrand	64	1	-11.4170
chr17	39848471	39848498	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	103036569	103036586	protein_coding	Cbx5	intron	ENSMUSG00000009575	NonProperStrand	3	1	-7.6307
chr8	47353487	47353587	SINE	B2_Mm1t	B2	chr8B2_Mm1t47353385	ProperStrand	1	chr8	47353627	47353717	SINE	B2_Mm1t	B2	chr8B2_Mm1t47353614	ProperStrand	1	1	-inf
chr2	22744838	22744912	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	47368191	47368261	protein_coding	Tgfbr1	intron	ENSMUSG00000007613	ProperStrand	20	1	-9.0188
chr15	53874127	53874227	LINE	L1Md_A	L1	chr15L1Md_A53869102	NonProperStrand	1	chr15	53874498	53874588	LINE	L1Md_A	L1	chr15L1Md_A53874463	NonProperStrand	1	1	-inf
chr4	130704730	130704820	LTR	ERVL-B4-int	ERVL	chr4ERVL-B4-int130704679	NonProperStrand	3	chr4	130704829	130704929	SINE	ID_B1	B4	chr4ID_B1130704853	ProperStrand	4	3	-inf
chr19	57622201	57622310	LTR	MTEb	MaLR	chr19MTEb57622226	NonProperStrand	1	chr5	146261005	146261048	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr15	99307910	99308203	DNA	Arthur1	Tip100	chr15Arthur199307488	NonProperStrand	2	chr17	39847546	39847597	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr14	78644354	78644454	LINE	Lx9	L1	chr14Lx978644058	ProperStrand	2	chr10	75738834	75738924	protein_coding	Dip2a	intron	ENSMUSG00000020231	ProperStrand	98	2	-inf
mmu-miR-6240	2	23	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	chr11	33754921	33754991	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	1	-14.6753
chr18	14647767	14647825	SINE	B4A	B4	chr18B4A14647774	NonProperStrand	1	chr4	88406963	88407060	protein_coding	Gm13283	exon	ENSMUSG00000078642	ProperStrand	8	1	-inf
chr17	39846453	39846534	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	34281267	34281287	LTR	MTD	MaLR	chr6MTD34281124	NonProperStrand	2	1	-5.3533
chr7	102295085	102295161	LINE	Lx6	L1	chr7Lx6102294800	NonProperStrand	2	chr7	102293546	102293632	Simple_repeat	(TA)n	Simple_repeat	chr7(TA)n102293469	ProperStrand	2	1	-19.8939
chr5	32009852	32009909	protein_coding-noncoding	Bre	utr5	ENSMUSG00000052139	ProperStrand	1	chr5	32009751	32009823	protein_coding	Bre	intron	ENSMUSG00000052139	ProperStrand	76	1	-inf
chr19	30031799	30031912	protein_coding	Il33	intron	ENSMUSG00000024810	ProperStrand	11	chr2	162050011	162050032	protein_coding	Ptprt	intron	ENSMUSG00000053141	NonProperStrand	55	1	-15.6698
chr10	128244729	128244787	protein_coding	Dnajc14	intron	ENSMUSG00000025354	ProperStrand	32	chr4	132310276	132310338	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-10.9899
chr10	37123019	37123109	LINE	L1MEg	L1	chr10L1MEg37123020	NonProperStrand	1	chr10	37122648	37122748	LTR	MLT1K	MaLR	chr10MLT1K37122199	ProperStrand	1	1	-inf
chr1	122410490	122410580	SINE	B1_Mm	Alu	chr1B1_Mm122410501	ProperStrand	1	chr1	122410180	122410280	SINE	B4	B4	chr1B4122410154	ProperStrand	1	1	-inf
chr6	3201479	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	148315311	148315328	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	3	-6.4221
chr13	38053517	38053566	DNA	MER2	MER2_type	chr13MER238053526	NonProperStrand	2	chr7	35037503	35037603	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	ProperStrand	102	1	-18.3670
chr17	39847230	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	56093335	56093356	protein_coding	Ebi3	exon	ENSMUSG00000003206	ProperStrand	13	2	-4.4697
chr15	6786881	6786967	protein_coding	Osmr	intron	ENSMUSG00000022146	NonProperStrand	23	chr18	12214387	12214457	protein_coding	6030446N20Rik	intron	ENSMUSG00000049411	ProperStrand	38	1	-14.8970
chr9	123461931	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr16	23111411	23111434	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	16	1	-3.4729
chr15	97818375	97818440	protein_coding	Col2a1	intron	ENSMUSG00000022483	ProperStrand	3	chr5	123094188	123094216	protein_coding	P2rx7	intron	ENSMUSG00000029468	ProperStrand	16	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chrX	75110539	75110636	protein_coding	Gm14744	intron	ENSMUSG00000079522	NonProperStrand	2	1	-13.4014
chr13	29855619	29855662	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr11	120346796	120346958	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	1	-7.1641
chr2	29352277	29352395	protein_coding	Med27	intron	ENSMUSG00000026799	ProperStrand	19	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.8834
chr8	111720271	111720371	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	NonProperStrand	118	chr1	69653312	69653402	protein_coding	Ikzf2	intron	ENSMUSG00000025997	ProperStrand	19	2	-19.5434
chr1	135555221	135555321	protein_coding	Zc3h11a	intron	ENSMUSG00000026464	ProperStrand	33	chr1	135581737	135581827	protein_coding	Lax1	intron	ENSMUSG00000051998	ProperStrand	22	1	-15.2796
chr8	77643032	77643132	protein_coding	Mcm5	intron	ENSMUSG00000005410	NonProperStrand	1	chr8	3946219	3946309	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	1	-inf
chr12	56653004	56653094	LTR	RLTR44E	ERVK	chr12RLTR44E56652815	ProperStrand	1	chr5	59790248	59790348	LTR	ORR1C2	MaLR	chr5ORR1C259790034	NonProperStrand	1	1	-inf
chr2	22744843	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	15729968	15730030	LTR	RLTR6_Mm	ERV1	chr17RLTR6_Mm15729601	NonProperStrand	1	1	-inf
chr17	39846766	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	96073629	96073967	SINE	RSINE1	B4	chr11RSINE196073608	NonProperStrand	2	1	-5.3533
chr8	91000127	91000217	LINE	L1_Rod	L1	chr8L1_Rod91000000	NonProperStrand	1	chr8	91000503	91000603	SINE	B3A	B2	chr8B3A91000456	NonProperStrand	1	1	-inf
chr16	24726397	24726527	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-9.1915
chr6	62585594	62585684	LTR	RLTR25A	ERVK	chr6RLTR25A62585565	ProperStrand	1	chr6	63794017	63794117	protein_coding	Grid2	intron	ENSMUSG00000071424	ProperStrand	24	1	-inf
chr2	103775394	103775428	SINE	B3	B2	chr2B3103775252	ProperStrand	1	chr2	103775682	103775760	SINE	B4A	B4	chr2B4A103775669	ProperStrand	1	1	-inf
chr18	37845363	37845387	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	chr4	132270079	132270113	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-9.5705
chr6	78475240	78475340	LINE	L1Md_T	L1	chr6L1Md_T78469021	ProperStrand	1	chr6	78475469	78475559	LINE	L1_Mm	L1	chr6L1_Mm78475468	NonProperStrand	1	1	-inf
chr16	94062403	94062503	LTR	MTC-int	MaLR	chr16MTC-int94062123	NonProperStrand	2	chr16	94062519	94062609	LTR	MTC	MaLR	chr16MTC94062504	NonProperStrand	2	2	-inf
chrX	100780903	100780999	non_coding	B230206F22Rik	.	ENSMUSG00000086370	NonProperStrand	30	chr13	55557782	55557841	protein_coding	Grk6	intron	ENSMUSG00000074886	NonProperStrand	87	2	-20.7930
chr14	27284097	27284197	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr8	124948542	124948632	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-3.9791
chr16	4758612	4758668	protein_coding	Hmox2	intron	ENSMUSG00000004070	ProperStrand	19	chr8	119546621	119546729	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	121	1	-12.9483
chr11	8599477	8599568	LINE	L1M4c	L1	chr11L1M4c8599500	ProperStrand	4	chr11	8599375	8599475	LTR	MTD	MaLR	chr11MTD8599061	ProperStrand	7	4	-inf
chr7	93529229	93529319	LINE	L1_Mur2	L1	chr7L1_Mur293528925	ProperStrand	1	chr10	122565912	122566012	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-inf
chr1	72226325	72226383	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	chr14	66862629	66865101	protein_coding	Ptk2b	intron	ENSMUSG00000059456	ProperStrand	38	1	-12.2686
chr17	20524390	20524408	LINE	L1Md_F2	L1	chr17L1Md_F220521183	NonProperStrand	1	chr17	39846462	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	106696469	106696488	LINE	L1Md_F2	L1	chr14L1Md_F2106693986	ProperStrand	2	chr13	94481331	94481444	protein_coding	Dmgdh	intron	ENSMUSG00000042102	ProperStrand	69	1	-18.8980
chr10	20160362	20160419	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr9	53400428	53400496	protein_coding	Acat1	intron	ENSMUSG00000032047	ProperStrand	5	1	-13.8872
chr2	150527290	150527390	LINE	L1_Mur1	L1	chr2L1_Mur1150527022	NonProperStrand	1	chr2	150527560	150527650	LTR	LTRIS2	ERV1	chr2LTRIS2150527452	ProperStrand	1	1	-inf
chr9	45346131	45346177	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	chr11	96798749	96798801	protein_coding	Prr15l	utr3	ENSMUSG00000047040	ProperStrand	27	2	-18.1551
chr8	85057012	85057097	Simple_repeat	(TC)n	Simple_repeat	chr8(TC)n85056949	ProperStrand	1	chr2	6838419	6838435	protein_coding	Celf2	intron	ENSMUSG00000002107	NonProperStrand	24	1	-inf
chr13	37857637	37857828	LTR	MTEa	MaLR	chr13MTEa37857424	NonProperStrand	22	chr13	37857831	37857936	LTR	ORR1E	MaLR	chr13ORR1E37857807	ProperStrand	5	3	-inf
chr16	22411637	22411674	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr3	157995838	157995926	protein_coding	Lrrc7	intron	ENSMUSG00000028176	NonProperStrand	76	1	-8.6111
chr3	122859162	122859179	protein_coding	Synpo2	intron	ENSMUSG00000050315	NonProperStrand	14	chr1	89704341	89704434	protein_coding	Sag	intron	ENSMUSG00000056055	ProperStrand	125	1	-13.5130
chr1	36078992	36079096	LINE	Lx9	L1	chr1Lx936078962	ProperStrand	10	chr1	36079080	36079198	SINE	B1_Mm	Alu	chr1B1_Mm36079099	ProperStrand	10	10	-inf
chr10	62844471	62844561	SINE	ID_B1	B4	chr10ID_B162844491	NonProperStrand	1	chr11	97396164	97396264	protein_coding	Srcin1	exon	ENSMUSG00000038453	NonProperStrand	68	1	-inf
chr2	53184165	53184240	LINE	L1MEc	L1	chr2L1MEc53184142	NonProperStrand	1	chr17	39847233	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	61763214	61763232	LINE	Lx8	L1	chr8Lx861762759	ProperStrand	3	chr17	39847657	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39844714	39844748	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr19	5134039	5134134	protein_coding	Pacs1	utr3	ENSMUSG00000024855	ProperStrand	45	1	-3.0854
chr12	23009972	23010011	lincRNA	2410018L13Rik	intron	ENSMUSG00000073164	NonProperStrand	9	chr12	24097213	24097242	pseudogene	Gm4437	.	ENSMUSG00000092445	ProperStrand	17	1	-18.3028
chr5	146260991	146261230	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	131573831	131574035	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	15	-inf
chr12	80223677	80223737	LTR	MTA_Mm	MaLR	chr12MTA_Mm80223328	NonProperStrand	3	chr12	80224722	80224792	LTR	ORR1A3-int	MaLR	chr12ORR1A3-int80224706	ProperStrand	4	1	-inf
chr17	39846453	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101288980	101295042	protein_coding	Rundc1	exon	ENSMUSG00000035007	NonProperStrand	9	2	-3.9140
chr8	70677805	70677972	LINE	L1MC2	L1	chr8L1MC270676375	NonProperStrand	7	chr8	70678022	70678122	LINE	Lx9	L1	chr8Lx970678042	ProperStrand	21	6	-20.2891
chr15	103242284	103242455	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	chr15	22714074	22714174	protein_coding	Cdh18	intron	ENSMUSG00000040420	NonProperStrand	22	1	-13.8071
chr12	57247881	57247969	LTR	MurERV4_19-int	ERVK	chr12MurERV4_19-int57246538	ProperStrand	2	chr3	32723336	32723367	protein_coding	Usp13	intron	ENSMUSG00000056900	ProperStrand	29	1	-19.5186
chr4	101723124	101723224	LTR	ORR1A1-int	MaLR	chr4ORR1A1-int101722860	NonProperStrand	1	chr4	101722626	101722716	LTR	ORR1A1	MaLR	chr4ORR1A1101722518	NonProperStrand	1	1	-inf
chr17	70844906	70844990	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr16	16118247	16118286	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	1	-7.2702
chr17	63964430	63964450	LINE	L1Md_T	L1	chr17L1Md_T63961117	ProperStrand	1	chr17	39847277	39847307	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr19	8909501	8909592	SINE	B3	B2	chr19B38909476	NonProperStrand	5	chr19	8910356	8910411	SINE	B3	B2	chr19B38910279	NonProperStrand	2	2	-inf
chr17	39847891	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	19792749	19792782	lincRNA	Gm10060	exon	ENSMUSG00000091171	ProperStrand	3	1	-4.3512
chr17	39846353	39846412	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	114574108	114574167	SINE	B3A	B2	chr8B3A114574037	NonProperStrand	1	1	-inf
chr1	151956337	151956381	Simple_repeat	(GGAGA)n	Simple_repeat	chr1(GGAGA)n151956161	NonProperStrand	2	chr1	151950088	151950148	protein_coding	Ptgs2	intron	ENSMUSG00000032487	NonProperStrand	4	1	-22.1285
chrX	109993196	109993296	LINE	L1_Mur3	L1	chrXL1_Mur3109993136	ProperStrand	1	chrX	109992956	109993046	LTR	RLTR24	ERV1	chrXRLTR24109992657	ProperStrand	1	1	-inf
chr14	63908575	63908718	LINE	Lx9	L1	chr14Lx963908600	NonProperStrand	4	chr14	63908494	63908587	SINE	B1_Mus2	Alu	chr14B1_Mus263908471	NonProperStrand	4	4	-inf
chr11	106057855	106057945	protein_coding	Strada	intron	ENSMUSG00000069631	NonProperStrand	38	chr11	87446369	87446396	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-9.4571
chr8	44943889	44943979	LINE	Lx4B	L1	chr8Lx4B44942526	ProperStrand	1	chr13	44869601	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr2	37881454	37881523	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	chr11	33162924	33162979	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-4.0948
chr11	109011830	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	104376191	104376220	SINE	B2_Mm2	B2	chr8B2_Mm2104376184	NonProperStrand	1	1	-inf
chr17	39847692	39847725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	80124945	80125014	SINE	B1_Mus1	Alu	chr10B1_Mus180124933	NonProperStrand	1	1	-inf
chr3	142228345	142228445	protein_coding-noncoding	Gbp3	utr5	ENSMUSG00000028268	NonProperStrand	1	chr3	142228596	142228686	protein_coding	Gbp3	intron	ENSMUSG00000028268	NonProperStrand	5	1	-inf
chr1	171503045	171503120	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr15	72814583	72814652	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	1	-9.7622
chr4	117153971	117154372	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	chr13	44869577	44869703	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-3.6300
chr1	172506219	172506278	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	chr9	56945245	56945294	protein_coding	Sin3a	intron	ENSMUSG00000042557	ProperStrand	25	1	-11.7163
chr6	117923708	117923787	SINE	B2_Mm1t	B2	chr6B2_Mm1t117923609	NonProperStrand	9	chr8	84480580	84480649	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-10.3802
chr2	37615014	37615139	Simple_repeat	(TTCC)n	Simple_repeat	chr2(TTCC)n37615028	NonProperStrand	1	chr2	150242289	150242316	protein_coding	Zfp442	intron	ENSMUSG00000068130	ProperStrand	9	1	-inf
chr2	22744837	22744912	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	24415113	24530360	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	2	-6.7164
chr7	35612237	35612318	LINE	L1MC1	L1	chr7L1MC135611925	NonProperStrand	1	chr17	39846818	39846862	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	73478007	73478110	protein_coding	Lrrk1	exon	ENSMUSG00000015133	ProperStrand	120	chr6	67294203	67294251	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	1	-8.1722
chr17	12969484	12969570	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	chr11	29461812	29461847	protein_coding	1700034F02Rik	intron	ENSMUSG00000020461	ProperStrand	7	1	-16.9017
chr13	9834328	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr10	83477691	83477787	SINE	B4A	B4	chr10B4A83477509	ProperStrand	1	1	-inf
chr8	62573953	62574043	LTR	RMER13A	ERVK	chr8RMER13A62573892	ProperStrand	1	chr8	62573569	62573669	LTR	RMER17A2	ERVK	chr8RMER17A262573169	ProperStrand	1	1	-inf
chr19	56593854	56594803	LINE	L1MB8	L1	chr19L1MB856593828	ProperStrand	1	chr17	39847277	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	148369440	148369540	LTR	MuRRS-int	ERV1	chr5MuRRS-int148367694	ProperStrand	4	1	-3.6552
chr17	39843832	39843922	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	133268655	133268755	protein_coding	Arid1a	intron	ENSMUSG00000007880	ProperStrand	53	1	-3.2034
chr13	109528203	109528274	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr19	7037251	7037339	protein_coding	Plcb3	exon	ENSMUSG00000024960	ProperStrand	22	1	-10.0052
chr14	120344210	120344274	LINE	L1MC	L1	chr14L1MC120343621	ProperStrand	5	chr17	39846827	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr4	80345581	80345681	LINE	L1Md_T	L1	chr4L1Md_T80344712	NonProperStrand	1	chr4	80345865	80345955	LINE	L1Md_T	L1	chr4L1Md_T80345694	NonProperStrand	1	1	-inf
chr8	80979056	80979156	SINE	B3	B2	chr8B380979064	ProperStrand	1	chr2	27146374	27146464	protein_coding	Vav2	intron	ENSMUSG00000009621	ProperStrand	38	1	-inf
chr4	44363918	44363981	protein_coding	Melk	exon	ENSMUSG00000035683	ProperStrand	27	chr3	41440237	41440309	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	1	-10.8909
chr2	59285259	59285349	SINE	B1F1	Alu	chr2B1F159285229	ProperStrand	1	chr2	59285464	59285564	Simple_repeat	(GAAA)n	Simple_repeat	chr2(GAAA)n59285374	ProperStrand	1	1	-inf
chr8	11622611	11622701	protein_coding	Ankrd10	intron	ENSMUSG00000031508	ProperStrand	164	chr12	41203201	41203301	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	3	-15.0864
chr10	4354402	4354468	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr17	27563159	27563243	protein_coding	Grm4	utr3	ENSMUSG00000063239	NonProperStrand	125	1	-8.2951
chr11	6123562	6123662	protein_coding	Npc1l1	intron	ENSMUSG00000020447	ProperStrand	50	chrX	106197062	106197152	pseudogene	5730416F02Rik	.	ENSMUSG00000081793	ProperStrand	13	1	-15.5230
chr12	32850153	32850220	SINE	B1_Mus1	Alu	chr12B1_Mus132850163	ProperStrand	1	chr6	84737862	84737939	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-inf
chr4	146204577	146204677	lincRNA	Gm17452	intron	ENSMUSG00000092143	NonProperStrand	6	chr4	147066533	147066623	protein_coding	Zfp534	intron	ENSMUSG00000062518	NonProperStrand	13	1	-inf
chr15	99349219	99349266	protein_coding	Faim2	intron	ENSMUSG00000023011	ProperStrand	19	chrX	103404286	103404342	protein_coding	Taf9b	intron	ENSMUSG00000047242	NonProperStrand	3	1	-19.6111
chr9	123462104	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr19	46709053	46709099	protein_coding	D19Wsu162e	intron	ENSMUSG00000047731	ProperStrand	7	1	-5.1121
chr5	113610765	113610855	SINE	B2_Mm2	B2	chr5B2_Mm2113610712	NonProperStrand	1	chr5	113610562	113610662	Simple_repeat	(CTGGGG)n	Simple_repeat	chr5(CTGGGG)n113610575	NonProperStrand	1	1	-inf
chr19	37115425	37115460	protein_coding	Cpeb3	intron	ENSMUSG00000039652	ProperStrand	70	chr1	160908067	160908192	protein_coding	1600012P17Rik	intron	ENSMUSG00000047661	NonProperStrand	4	1	-17.5299
chr18	5798928	5799028	LINE	L1Md_F2	L1	chr18L1Md_F25796688	ProperStrand	1	chrX	67578607	67578697	LINE	Lx5	L1	chrXLx567578143	NonProperStrand	1	1	-inf
chr6	3201480	3201531	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	107873222	107873238	protein_coding	Zyg11a	intron	ENSMUSG00000034645	NonProperStrand	13	1	-5.8236
chr15	37215401	37215491	protein_coding	Grhl2	intron	ENSMUSG00000022286	ProperStrand	17	chr15	37684488	37684588	protein_coding	Ncald	intron	ENSMUSG00000051359	ProperStrand	16	1	-17.2697
chr3	123507935	123508006	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr9	55223522	55223565	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	1	-11.9969
chr10	117054057	117054894	LTR	ORR1A4	MaLR	chr10ORR1A4117053907	NonProperStrand	4	chr10	117054940	117055156	SINE	B3	B2	chr10B3117055002	NonProperStrand	4	4	-inf
chr1	122357170	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr1	189844090	189844152	protein_coding	Esrrg	intron	ENSMUSG00000026610	ProperStrand	106	1	-7.7717
chr10	77196211	77196267	LINE	L1MCc	L1	chr10L1MCc77196151	ProperStrand	1	chr17	39845450	39845548	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	1	-inf
chr16	33394300	33394366	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.0695
chr16	25642897	25642997	LINE	L1Md_F2	L1	chr16L1Md_F225642451	ProperStrand	1	chr16	25642344	25642434	SINE	B2_Mm2	B2	chr16B2_Mm225642255	ProperStrand	1	1	-inf
chr17	70963742	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	108685578	108685679	protein_coding	Nrd1	intron	ENSMUSG00000053510	NonProperStrand	9	1	-10.0658
chr6	3201470	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	26712495	26712514	protein_coding	Fbxl7	intron	ENSMUSG00000043556	NonProperStrand	10	1	-6.3611
chr1	93686666	93686766	LINE	L1MEg	L1	chr1L1MEg93686626	ProperStrand	1	chr17	39846738	39846828	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	77530854	77530897	LINE	L1MB2	L1	chr14L1MB277530784	NonProperStrand	2	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chrX	21040601	21040701	LINE	L1M2	L1	chrXL1M221040075	ProperStrand	2	chrX	21040782	21040872	LTR	MTD	MaLR	chrXMTD21040685	NonProperStrand	2	2	-inf
chr1	93778558	93778648	LINE	Lx4B	L1	chr1Lx4B93778251	ProperStrand	1	chr1	93778825	93778925	SINE	B1_Mur4	Alu	chr1B1_Mur493778810	ProperStrand	1	1	-inf
chr13	29294518	29294608	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr18	44780338	44780437	protein_coding	Mcc	intron	ENSMUSG00000071856	NonProperStrand	20	1	-10.1693
chr9	21097451	21097541	SINE	ID_B1	B4	chr9ID_B121097348	NonProperStrand	1	chr9	21097534	21097634	SINE	ID_B1	B4	chr9ID_B121097549	NonProperStrand	1	1	-inf
chr11	12291701	12291777	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr4	141478131	141478217	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	1	-8.1066
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr1	172501354	172501492	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	1	-4.5541
chr17	7744655	7744755	LINE	L1Md_F	L1	chr17L1Md_F7744670	NonProperStrand	2	chr17	7745051	7745141	LINE	L1_Mus1	L1	chr17L1_Mus17745029	NonProperStrand	1	1	-inf
chr2	115689635	115689698	protein_coding	Meis2	utr3	ENSMUSG00000027210	NonProperStrand	155	chr9	69313934	69314014	protein_coding	Anxa2	intron	ENSMUSG00000032231	ProperStrand	46	1	-10.6531
chr4	43492896	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	chr12	78350925	78350991	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.8540
chr3	100143720	100144333	LINE	L1MD3	L1	chr3L1MD3100143623	ProperStrand	5	chr3	100142992	100143731	LINE	Lx6	L1	chr3Lx6100143004	ProperStrand	5	4	-inf
chr16	13906450	13906550	protein_coding	Mpv17l	intron	ENSMUSG00000022679	ProperStrand	42	chr3	40702670	40702760	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	4	-inf
chrX	86657433	86657523	LTR	ORR1C2	MaLR	chrXORR1C286657451	ProperStrand	1	chrX	86657106	86657206	SINE	ID_B1	B4	chrXID_B186657124	NonProperStrand	1	1	-inf
chr4	116371758	116371781	protein_coding	Prdx1	intron	ENSMUSG00000028691	NonProperStrand	13	chr14	60834088	60846409	protein_coding	Nupl1	intron	ENSMUSG00000063895	NonProperStrand	29	1	-16.5902
chr18	61626580	61626680	Low_complexity	CT-rich	Low_complexity	chr18CT-rich61626526	NonProperStrand	1	chr18	61626681	61626771	snRNA	ENSMUSG00000089541_U6	.	ENSMUSG00000089541	ProperStrand	1	1	-inf
chr5	100451138	100451187	LTR	MT2B	ERVL	chr5MT2B100451098	ProperStrand	1	chr5	100451114	100451139	SINE	B1_Mur1	Alu	chr5B1_Mur1100451062	ProperStrand	1	1	-inf
chr8	71752894	71752994	Unknown	MurSatRep1	Unknown	chr8MurSatRep171752746	ProperStrand	5	chr8	71752732	71752822	protein_coding	Zfp930	exon	ENSMUSG00000059897	ProperStrand	7	3	-22.1800
chr14	63493780	63493864	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	chr6	87009314	87009388	protein_coding	Gfpt1	intron	ENSMUSG00000029992	ProperStrand	40	1	-11.0690
chr14	27170849	27170901	LTR	MTC	MaLR	chr14MTC27170527	NonProperStrand	1	chr14	27172189	27172231	LTR	MTC	MaLR	chr14MTC27172138	NonProperStrand	1	1	-inf
chr17	86016515	86016615	lincRNA	Six3os1	exon	ENSMUSG00000093460	ProperStrand	25	chr2	179913312	179913402	protein_coding	Lama5	intron	ENSMUSG00000015647	ProperStrand	62	1	-13.7324
chr13	29016434	29016524	SINE	B1_Mur2	Alu	chr13B1_Mur229016452	NonProperStrand	1	chr13	29016328	29016428	SINE	PB1D7	Alu	chr13PB1D729016340	NonProperStrand	1	1	-inf
chr4	142213191	142213290	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n142213100	NonProperStrand	1	chr4	145156587	145156648	protein_coding	Gm13242	intron	ENSMUSG00000058186	NonProperStrand	42	1	-inf
chr2	146319167	146319205	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	ProperStrand	101	chr13	99495195	99495284	protein_coding	Fcho2	utr3	ENSMUSG00000041685	ProperStrand	31	1	-12.3109
chr11	115676647	115676747	protein_coding-noncoding	Tsen54	utr5	ENSMUSG00000020781	NonProperStrand	1	chr11	115676783	115676873	protein_coding	Tsen54	intron	ENSMUSG00000020781	NonProperStrand	20	1	-inf
chr8	107548487	107548577	LINE	L1_Mur3	L1	chr8L1_Mur3107548179	ProperStrand	2	chr8	107548962	107549062	LINE	L1_Mur3	L1	chr8L1_Mur3107548970	ProperStrand	1	1	-inf
chr17	39846430	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	57650136	57650198	protein_coding	Pfn2	intron	ENSMUSG00000027805	ProperStrand	4	1	-3.6552
chr11	120812419	120812716	protein_coding-noncoding	Slc16a3	utr5	ENSMUSG00000025161	NonProperStrand	5	chr11	120812313	120812413	protein_coding	Slc16a3	intron	ENSMUSG00000025161	NonProperStrand	149	4	-inf
chr3	16231972	16232072	LTR	ORR1A3-int	MaLR	chr3ORR1A3-int16230952	NonProperStrand	1	chr2	177903370	177903460	protein_coding	Phactr3	intron	ENSMUSG00000027525	NonProperStrand	33	1	-inf
chr17	35247173	35247250	protein_coding	Ly6g5c	intron	ENSMUSG00000034482	ProperStrand	13	chr15	80930356	80930423	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	1	-13.1844
chr6	145034551	145034577	LTR	RMER3D-int	ERVK	chr6RMER3D-int145033551	ProperStrand	2	chr9	123462099	123462115	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	46839985	46840047	LINE	Lx5	L1	chr13Lx546839899	ProperStrand	1	chr17	39846461	39846505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39848200	39848305	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	121061924	121061943	protein_coding	1110031I02Rik	intron	ENSMUSG00000025169	NonProperStrand	3	1	-7.3534
chr11	102520917	102521007	miRNA	AL672269.1	.	ENSMUSG00000076129	ProperStrand	3	chr11	102520796	102520896	pseudogene	Psmb5-ps	.	ENSMUSG00000080992	ProperStrand	9	3	-inf
chr6	86971590	86971672	protein_coding	Nfu1	intron	ENSMUSG00000029993	ProperStrand	10	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-9.6021
chr4	132353270	132353377	SINE	ID_B1	B4	chr4ID_B1132353268	ProperStrand	5	chr4	132353150	132353268	Simple_repeat	(CAGAGA)n	Simple_repeat	chr4(CAGAGA)n132353153	NonProperStrand	5	4	-inf
chr4	70391155	70391210	LINE	L1Md_F2	L1	chr4L1Md_F270390479	NonProperStrand	1	chr12	31624479	31624539	protein_coding	Sh3yl1	exon	ENSMUSG00000020669	NonProperStrand	18	1	-inf
chr6	56878205	56878270	LTR	ORR1D1	MaLR	chr6ORR1D156878088	ProperStrand	3	chrX	13292199	13292259	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-16.4569
chr15	53247556	53247646	LINE	L2c	L2	chr15L2c53247569	NonProperStrand	1	chr15	53247353	53247453	SINE	B4A	B4	chr15B4A53247307	ProperStrand	1	1	-inf
chr18	82734075	82734165	protein_coding-noncoding	Mbp	utr5	ENSMUSG00000041607	NonProperStrand	1	chr18	82733749	82733849	protein_coding	Mbp	intron	ENSMUSG00000041607	NonProperStrand	24	1	-inf
chr17	39847440	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	136771607	136774623	SINE	B1_Mus1	Alu	chr4B1_Mus1136774560	ProperStrand	2	2	-inf
chr8	22179738	22179825	LINE	L1_Mus1	L1	chr8L1_Mus122178513	ProperStrand	2	chr9	44819635	44819658	LTR	LTR16A	ERVL	chr9LTR16A44819541	NonProperStrand	1	1	-inf
chr5	122172754	122172845	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	chr2	150398461	150398561	protein_coding	Cst7	intron	ENSMUSG00000068129	NonProperStrand	21	1	-12.7432
chr6	72748981	72749054	LTR	ORR1D2-int	MaLR	chr6ORR1D2-int72748924	ProperStrand	1	chr6	72746409	72746448	SINE	ID_B1	B4	chr6ID_B172746359	NonProperStrand	1	1	-inf
chr8	73352761	73352861	SINE	ID_B1	B4	chr8ID_B173352742	ProperStrand	7	chr8	73352858	73352948	SINE	PB1D7	Alu	chr8PB1D773352845	ProperStrand	11	7	-inf
chr18	17498802	17498902	LINE	L1Md_F2	L1	chr18L1Md_F217498622	ProperStrand	1	chr18	17255326	17255416	lincRNA	1700001G01Rik	intron	ENSMUSG00000087170	ProperStrand	5	1	-inf
chr2	127127109	127127135	SINE	RSINE1	B4	chr2RSINE1127127002	ProperStrand	1	chr4	148569158	148569251	protein_coding	Kif1b	intron	ENSMUSG00000063077	NonProperStrand	70	1	-inf
chr9	123461821	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	3	-3.9280
chr8	84699694	84699711	LINE	Lx2	L1	chr8Lx284698625	NonProperStrand	21	chr9	59402851	59402899	protein_coding	Hexa	intron	ENSMUSG00000025232	NonProperStrand	14	1	-17.0431
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr9	118065148	118065178	lincRNA	Gm17399	intron	ENSMUSG00000092135	NonProperStrand	10	1	-13.4734
chr10	40258558	40258622	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr19	40310099	40310194	protein_coding	Pdlim1	intron	ENSMUSG00000055044	ProperStrand	44	1	-5.9653
chr11	70651140	70651206	LTR	ORR1D1	MaLR	chr11ORR1D170650998	ProperStrand	1	chr5	124015839	124015919	protein_coding	Vps33a	intron	ENSMUSG00000029434	ProperStrand	26	1	-inf
chr17	27885928	27886028	SINE	B4A	B4	chr17B4A27885853	ProperStrand	3	chr17	27885426	27885516	SINE	ID_B1	B4	chr17ID_B127885426	NonProperStrand	3	1	-20.2168
chr10	77192952	77193042	LTR	RLTR12B	ERVK	chr10RLTR12B77192969	ProperStrand	2	chr10	77192825	77192925	SINE	B2_Mm1t	B2	chr10B2_Mm1t77192801	ProperStrand	1	1	-inf
chr11	22996319	22996419	LTR	RLTR13C1	ERVK	chr11RLTR13C122995596	NonProperStrand	7	chr11	68790626	68790716	SINE	B3	B2	chr11B368790580	NonProperStrand	7	3	-inf
chr11	51599355	51599445	protein_coding	Sar1b	intron	ENSMUSG00000020386	NonProperStrand	109	chr1	125412915	125413015	protein_coding	Dpp10	intron	ENSMUSG00000036815	ProperStrand	52	3	-inf
chr11	67495692	67495792	protein_coding-noncoding	Gas7	utr5	ENSMUSG00000033066	ProperStrand	3	chr11	67495605	67495695	protein_coding	Gas7	intron	ENSMUSG00000033066	ProperStrand	38	3	-inf
chr4	94528473	94528511	protein_coding	Tek	intron	ENSMUSG00000006386	NonProperStrand	54	chr1	34121866	34121894	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-6.9963
chr9	95202535	95202583	LINE	Lx4B	L1	chr9Lx4B95200769	NonProperStrand	2	chr1	136719207	136719290	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-17.7048
chr1	42888819	42888919	LTR	ORR1E	MaLR	chr1ORR1E42888767	ProperStrand	1	chr17	24721133	24721223	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-inf
chr11	69889858	69890092	LINE	Lx9	L1	chr11Lx969889824	NonProperStrand	2	chr4	133865893	133867162	LINE	Lx8	L1	chr4Lx8133867116	ProperStrand	4	2	-inf
chr6	91737736	91737789	protein_coding-noncoding	Grip2	exon	ENSMUSG00000030098	NonProperStrand	1	chr6	91737639	91737702	protein_coding	Grip2	intron	ENSMUSG00000030098	NonProperStrand	217	1	-inf
chr13	97817042	97817132	LTR	RLTR1D	ERV1	chr13RLTR1D97817026	ProperStrand	6	chr13	97816947	97817047	LTR	RMER12	ERVK	chr13RMER1297816961	ProperStrand	1	1	-inf
chr11	88695367	88695394	protein_coding	Akap1	intron	ENSMUSG00000018428	ProperStrand	140	chr4	149120029	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.9146
chr15	79108483	79108500	protein_coding	Baiap2l2	intron	ENSMUSG00000018126	ProperStrand	1	chr13	112578198	112578274	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr9	19657613	19657703	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr19	28575113	28575212	protein_coding	Glis3	intron	ENSMUSG00000052942	ProperStrand	174	1	-8.6186
chr2	120507602	120507696	protein_coding	Stard9	intron	ENSMUSG00000033705	NonProperStrand	75	chr8	18708752	18708799	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-6.4676
chr1	37481446	37481546	protein_coding	6330578E17Rik	intron	ENSMUSG00000026112	NonProperStrand	2	chr1	43528065	43528155	protein_coding	Nck2	intron	ENSMUSG00000066877	NonProperStrand	3	1	-20.8297
chr17	39846921	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	16038125	16038143	protein_coding	Cep78	intron	ENSMUSG00000041491	ProperStrand	2	1	-5.3533
chr3	86715630	86715670	protein_coding	Dclk2	intron	ENSMUSG00000028078	NonProperStrand	7	chr3	86225327	86225426	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-14.7765
chr11	54722468	54722522	protein_coding	Gpx3	intron	ENSMUSG00000018339	NonProperStrand	20	chr14	118977225	118977292	protein_coding	Abcc4	intron	ENSMUSG00000032849	ProperStrand	24	1	-16.1252
chr3	77231570	77231670	LINE	L1_Mus1	L1	chr3L1_Mus177230558	NonProperStrand	1	chr3	77231898	77231988	LTR	RLTR15	ERVK	chr3RLTR1577231888	NonProperStrand	1	1	-inf
chr3	32555524	32561543	LINE	Lx9	L1	chr3Lx932561278	ProperStrand	2	chr17	39847575	39847607	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	109012014	109012039	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr16	21207473	21207585	protein_coding	Ephb3	intron	ENSMUSG00000005958	ProperStrand	32	1	-13.5438
chr9	110281287	110281346	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr13	97190547	97190601	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	5	-7.1305
chr14	56810856	56811347	LINE	L1Md_T	L1	chr14L1Md_T56807183	NonProperStrand	8	chr9	123462082	123462118	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr17	39846954	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	63268245	63268266	protein_coding	Gm17384	intron	ENSMUSG00000090326	NonProperStrand	3	2	-8.0300
chr7	116286380	116286449	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	chr2	20802686	20802752	protein_coding	Arhgap21	exon	ENSMUSG00000036591	NonProperStrand	34	1	-11.1031
chr10	45916250	45916271	LINE	Lx9	L1	chr10Lx945915781	NonProperStrand	1	chr17	39846433	39846463	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	58037903	58037955	antisense	Gm14661	.	ENSMUSG00000067835	ProperStrand	56	chr3	108554673	108554747	protein_coding	Aknad1	exon	ENSMUSG00000049565	NonProperStrand	220	1	-9.5566
chr1	118840358	118840458	LINE	L1Md_A	L1	chr1L1Md_A118839259	ProperStrand	6	chr1	118840506	118841921	LINE	L1Md_A	L1	chr1L1Md_A118840469	NonProperStrand	6	6	-inf
chr18	34822398	34822425	SINE	B1_Mus2	Alu	chr18B1_Mus234822394	ProperStrand	1	chr18	34813531	34819825	SINE	B4A	B4	chr18B4A34819723	ProperStrand	1	1	-inf
chr7	120133977	120134077	LTR	ORR1E-int	MaLR	chr7ORR1E-int120133837	ProperStrand	2	chr7	120133640	120133728	LTR	ORR1E	MaLR	chr7ORR1E120133482	ProperStrand	1	1	-inf
chr6	146549482	146549572	LINE	L1_Mur2	L1	chr6L1_Mur2146549457	ProperStrand	1	chr6	146549378	146549478	SINE	RSINE1	B4	chr6RSINE1146549314	ProperStrand	1	1	-inf
chr17	39847668	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	57793026	57793088	LTR	RMER17C-int	ERVK	chr3RMER17C-int57792249	NonProperStrand	3	1	-4.3512
chr12	88196009	88196025	SINE	B1_Mur3	Alu	chr12B1_Mur388195987	NonProperStrand	2	chr17	39843477	39843503	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr7	130902011	130902101	LTR	MT2A	ERVL	chr7MT2A130902023	NonProperStrand	1	chr7	130902132	130902234	LTR	MT2A	ERVL	chr7MT2A130902147	NonProperStrand	2	1	-inf
chr17	46857173	46857334	protein_coding-noncoding	Pex6	utr5	ENSMUSG00000002763	NonProperStrand	4	chr17	46857292	46857387	protein_coding	Pex6	exon	ENSMUSG00000002763	NonProperStrand	15	3	-inf
chr17	39847047	39847169	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	151819978	151819997	SINE	ID_B1	B4	chr1ID_B1151819922	NonProperStrand	1	1	-inf
chr10	77992411	77993397	LINE	L1_Mur3	L1	chr10L1_Mur377992233	ProperStrand	10	chr10	77992528	77994186	LINE	Lx4B	L1	chr10Lx4B77992672	ProperStrand	21	2	-20.3443
chr13	111748796	111748825	LTR	RMER6C	ERVK	chr13RMER6C111748369	NonProperStrand	1	chr17	39846460	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	123462157	123462174	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	51474041	51474068	protein_coding	Mgst2	intron	ENSMUSG00000074604	ProperStrand	9	1	-4.5963
chr9	48991210	48991266	LINE	L1_Mus3	L1	chr9L1_Mus348991151	NonProperStrand	1	chr9	48991038	48991104	SINE	B2_Mm2	B2	chr9B2_Mm248990957	NonProperStrand	1	1	-inf
chr10	81485935	81486025	LTR	RLTR11A	ERVK	chr10RLTR11A81485951	NonProperStrand	6	chr10	81485817	81485917	LTR	RMER21A	ERV1	chr10RMER21A81484969	NonProperStrand	6	6	-inf
chr4	102785953	102786000	protein_coding	Wdr78	intron	ENSMUSG00000035126	NonProperStrand	5	chr2	5379281	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.6307
chr17	39846707	39846740	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	27123734	27123777	protein_coding	Fnta	intron	ENSMUSG00000015994	ProperStrand	5	1	-3.1907
chr16	93917437	93917509	SINE	B2_Mm2	B2	chr16B2_Mm293917400	ProperStrand	1	chr19	5747416	5747498	protein_coding	Ltbp3	exon	ENSMUSG00000024940	ProperStrand	24	1	-inf
chr19	32191706	32191798	SINE	B3	B2	chr19B332191723	ProperStrand	7	chr19	32197195	32197295	protein_coding	Sgms1	utr3	ENSMUSG00000040451	ProperStrand	159	7	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr3	86790583	86790673	protein_coding	Cd1d2	intron	ENSMUSG00000041750	NonProperStrand	9	1	-9.8245
chr12	54696806	54696946	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr4	148618956	148618976	protein_coding	Kif1b	intron	ENSMUSG00000063077	ProperStrand	77	1	-9.8785
chr10	82376729	82376757	LTR	MLT1A	MaLR	chr10MLT1A82376622	ProperStrand	1	chr7	68022830	68022854	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n68022822	ProperStrand	1	1	-inf
chr4	149156792	149157975	SINE	B2_Mm2	B2	chr4B2_Mm2149157927	NonProperStrand	1	chr16	57218896	57218981	protein_coding	Tbc1d23	intron	ENSMUSG00000022749	ProperStrand	21	1	-inf
chr13	49718566	49718623	protein_coding	Ogn	utr3	ENSMUSG00000021390	ProperStrand	39	chr5	114852007	114852036	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-10.1710
chr5	15891270	15891370	LTR	MTB-int	MaLR	chr5MTB-int15891179	NonProperStrand	1	chr5	15891060	15891150	LTR	MTB	MaLR	chr5MTB15890791	NonProperStrand	1	1	-inf
chrX	37091151	37091251	LINE	L1MB8	L1	chrXL1MB837090825	ProperStrand	3	chrX	37091332	37091423	SINE	B4	B4	chrXB437091342	NonProperStrand	3	3	-inf
chrX	7843019	7843109	SINE	B2_Mm2	B2	chrXB2_Mm27842986	NonProperStrand	2	chrX	7856078	7856178	protein_coding	Slc38a5	intron	ENSMUSG00000031170	ProperStrand	6	2	-inf
chr18	7059412	7059512	LTR	IAPEz-int	ERVK	chr18IAPEz-int7058977	ProperStrand	1	chr14	79862226	79862316	protein_coding	Wbp4	intron	ENSMUSG00000022023	ProperStrand	22	1	-inf
chr12	80181493	80183467	protein_coding	Pigh	exon	ENSMUSG00000021120	ProperStrand	16	chr12	80178422	80181432	protein_coding	Plekhh1	utr3	ENSMUSG00000060716	NonProperStrand	24	1	-16.5806
chr11	115173279	115173342	protein_coding	Otop2	intron	ENSMUSG00000050201	ProperStrand	7	chr18	59052646	59052663	protein_coding	Adamts19	intron	ENSMUSG00000053441	NonProperStrand	4	1	-inf
chr10	82955203	82955450	protein_coding	Aldh1l2	intron	ENSMUSG00000020256	ProperStrand	30	chr9	123461813	123462020	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	4	-8.7431
chr7	16011526	16011616	LINE	L1_Mus3	L1	chr7L1_Mus316011527	ProperStrand	1	chr17	39848253	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr9	96315638	96315738	SINE	B4	B4	chr9B496315631	NonProperStrand	1	chr9	96315535	96315625	SINE	ID_B1	B4	chr9ID_B196315554	NonProperStrand	1	1	-inf
chr4	54949785	54949875	LTR	MT2B2	ERVL	chr4MT2B254949364	NonProperStrand	7	chr4	54949950	54950050	LTR	ORR1D1	MaLR	chr4ORR1D154949943	ProperStrand	3	3	-inf
chr4	94361580	94361670	LINE	Lx	L1	chr4Lx94361457	NonProperStrand	1	chr4	94361974	94362074	LINE	Lx	L1	chr4Lx94361890	ProperStrand	1	1	-inf
chr9	109943374	109943404	protein_coding	Mtap4	intron	ENSMUSG00000032479	ProperStrand	91	chr9	108072060	108072181	protein_coding	Bsn	intron	ENSMUSG00000032589	ProperStrand	35	1	-12.2744
chr2	155893803	155893893	protein_coding-noncoding	Spag4	utr5	ENSMUSG00000038180	NonProperStrand	4	chr2	155893665	155893765	protein_coding	Spag4	exon	ENSMUSG00000038180	NonProperStrand	3	1	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr17	39846427	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	8	-4.1799
chr12	99391034	99391117	LINE	L1_Mus1	L1	chr12L1_Mus199390401	ProperStrand	2	chr17	39848704	39848782	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-8.7208
chr7	36112597	36112697	LINE	L1MA6	L1	chr7L1MA636112469	NonProperStrand	1	chr7	36112221	36112311	LTR	ORR1D2	MaLR	chr7ORR1D236112202	ProperStrand	1	1	-inf
chr19	10903431	10903697	protein_coding	Cd6	intron	ENSMUSG00000024670	NonProperStrand	8	chr2	28533697	28533766	protein_coding	Tsc1	intron	ENSMUSG00000026812	ProperStrand	110	1	-14.9462
chr3	47651537	47651627	LTR	RLTR23	ERV1	chr3RLTR2347651459	NonProperStrand	1	chr3	47651080	47651180	SINE	B1_Mus1	Alu	chr3B1_Mus147651014	NonProperStrand	1	1	-inf
chr4	24536403	24574425	LINE	Lx8	L1	chr4Lx824536218	NonProperStrand	4	chr4	24574423	24574523	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-16.6334
chr17	39843969	39844012	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr6	134920943	134921032	SINE	ID_B1	B4	chr6ID_B1134920947	ProperStrand	1	1	-inf
chr4	130310119	130310160	protein_coding	Pum1	intron	ENSMUSG00000028580	ProperStrand	38	chr3	142375663	142375750	protein_coding	Ccbl2	intron	ENSMUSG00000040213	NonProperStrand	11	1	-16.4424
chr3	119740803	119740887	LTR	RLTR25A	ERVK	chr3RLTR25A119740074	NonProperStrand	1	chr9	123462115	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847026	39847132	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	70702220	70702236	Low_complexity	A-rich	Low_complexity	chr16A-rich70702204	ProperStrand	3	1	-4.3017
chr17	39847609	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	61028793	61028836	SINE	MIR	MIR	chr18MIR61028720	ProperStrand	1	1	-inf
chr5	110408151	110408193	LINE	L1Md_T	L1	chr5L1Md_T110404038	NonProperStrand	58	chr5	110402504	110402585	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110401401	NonProperStrand	3	1	-18.5484
chr17	39846649	39847143	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	4136301	4136359	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	6	-3.8782
chr7	50311101	50311191	LTR	LTRIS2	ERV1	chr7LTRIS250311115	ProperStrand	1	chr7	50311307	50311407	LTR	RMER17B	ERVK	chr7RMER17B50311313	ProperStrand	1	1	-inf
chr2	153380090	153380170	SINE	ID_B1	B4	chr2ID_B1153380108	ProperStrand	3	chr2	153357735	153357770	Simple_repeat	(CCCCCA)n	Simple_repeat	chr2(CCCCCA)n153357715	ProperStrand	2	2	-inf
chr6	122842950	122843006	SINE	B1_Mus2	Alu	chr6B1_Mus2122842943	NonProperStrand	1	chr11	69219461	69219478	protein_coding	Kdm6b	exon	ENSMUSG00000018476	NonProperStrand	1	1	-inf
chr1	65004641	65004741	LTR	ORR1B1	MaLR	chr1ORR1B165004366	NonProperStrand	1	chr1	65004897	65004987	LTR	ORR1B1	MaLR	chr1ORR1B165004921	NonProperStrand	1	1	-inf
chr2	25917758	25917848	protein_coding-noncoding	Nacc2	utr3	ENSMUSG00000026932	ProperStrand	2	chr2	25917624	25917724	protein_coding	Nacc2	intron	ENSMUSG00000026932	ProperStrand	67	2	-inf
chr12	86487564	86487700	protein_coding	Rps6kl1	intron	ENSMUSG00000019235	NonProperStrand	221	chr6	113138097	113138116	protein_coding	Lhfpl4	intron	ENSMUSG00000042873	NonProperStrand	50	1	-9.7756
chr17	39843506	39843552	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	98704129	98704185	protein_coding	Rapgefl1	intron	ENSMUSG00000038020	NonProperStrand	28	1	-3.9511
chr17	39846580	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	78560317	78560334	protein_coding	D16Ertd472e	intron	ENSMUSG00000022864	NonProperStrand	2	1	-5.3533
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr5	64136126	64136147	protein_coding	3110047P20Rik	intron	ENSMUSG00000090061	ProperStrand	21	1	-13.7590
chr5	142905471	142905616	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	chr12	54091241	54091298	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-5.9127
chr11	22899913	22900004	protein_coding	Cct4	intron	ENSMUSG00000007739	NonProperStrand	5	chr15	55637952	55637969	protein_coding	Sntb1	intron	ENSMUSG00000060429	ProperStrand	29	1	-18.5774
chr11	8542217	8542317	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr17	8379701	8379791	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-9.8795
chr7	130719916	130720016	LINE	Lx5	L1	chr7Lx5130719935	ProperStrand	12	chr7	130719788	130719878	LTR	MTEa	MaLR	chr7MTEa130719585	ProperStrand	1	1	-inf
chr17	39843633	39843667	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	87247667	87247742	protein_coding	Tex14	intron	ENSMUSG00000010342	ProperStrand	45	1	-3.0729
chr13	80649225	80649325	LINE	L1_Mus2	L1	chr13L1_Mus280649159	NonProperStrand	1	chr13	81009751	81009841	LTR	MTC	MaLR	chr13MTC81009521	ProperStrand	1	1	-inf
chrX	102187408	102187839	SINE	PB1D10	Alu	chrXPB1D10102187362	NonProperStrand	5	chr17	24721176	24721235	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-14.1679
chr10	61664115	61664194	protein_coding	Tspan15	intron	ENSMUSG00000037031	NonProperStrand	51	chr9	105819485	105819555	protein_coding	Col6a5	intron	ENSMUSG00000091345	ProperStrand	15	1	-15.1804
chr7	96720913	96721034	LTR	IAPEz-int	ERVK	chr7IAPEz-int96720714	NonProperStrand	2	chr5	86458961	86458979	protein_coding	Cenpc1	intron	ENSMUSG00000029253	ProperStrand	2	1	-19.8939
chr11	49885102	49885202	protein_coding	Rnf130	intron	ENSMUSG00000020376	ProperStrand	22	chr7	112799929	112800019	protein_coding	Fxc1	intron	ENSMUSG00000089847	ProperStrand	81	1	-13.4539
chr11	50250588	50250688	LTR	MTA_Mm	MaLR	chr11MTA_Mm50250437	ProperStrand	1	chr11	50252213	50252303	SINE	B3	B2	chr11B350252174	ProperStrand	13	1	-inf
chr17	39847272	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	28037457	28037523	SINE	B1_Mus2	Alu	chr17B1_Mus228037437	NonProperStrand	2	1	-6.5615
chr5	23426538	23426623	protein_coding	Fam126a	intron	ENSMUSG00000028995	ProperStrand	48	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.4116
chr13	64108275	64108375	LTR	MTE2a	MaLR	chr13MTE2a64108240	NonProperStrand	1	chr17	39848099	39848151	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chrX	45597017	45597117	LINE	L1MC3	L1	chrXL1MC345596958	NonProperStrand	1	chrX	45597346	45597436	LINE	Lx5	L1	chrXLx545597257	NonProperStrand	1	1	-inf
chr15	99126937	99126958	protein_coding	Prpf40b	intron	ENSMUSG00000023007	ProperStrand	26	chr5	24829518	24829543	protein_coding	Mll3	utr5	ENSMUSG00000038056	ProperStrand	134	1	-12.1011
chr5	68375361	68375382	LINE	L1_Mus2	L1	chr5L1_Mus268375062	NonProperStrand	1	chr17	39847221	39847252	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	126841171	126842492	LTR	ORR1D2	MaLR	chr4ORR1D2126841042	ProperStrand	4	chr4	126842505	126842605	SINE	B1_Mm	Alu	chr4B1_Mm126842492	NonProperStrand	4	4	-inf
chr17	39846629	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	30540665	30540765	SINE	B1_Mus1	Alu	chr13B1_Mus130540640	NonProperStrand	4	2	-6.6967
chr9	96145693	96145731	protein_coding	Tfdp2	intron	ENSMUSG00000032411	ProperStrand	65	chr10	93480522	93480559	protein_coding	Vezt	intron	ENSMUSG00000036099	NonProperStrand	24	1	-13.7204
chr2	106813367	106813436	protein_coding	2700007P21Rik	intron	ENSMUSG00000027122	NonProperStrand	9	chr1	152777197	152777260	protein_coding	Hmcn1	intron	ENSMUSG00000066842	NonProperStrand	30	1	-17.3122
chr3	52318262	52318352	LTR	MTA_Mm	MaLR	chr3MTA_Mm52318219	ProperStrand	2	chr13	42156594	42156694	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	54	1	-19.4448
chr8	46586558	46586658	LINE	L1_Mus1	L1	chr8L1_Mus146585900	ProperStrand	1	chr8	46586659	46590267	SINE	B1F	Alu	chr8B1F46590171	ProperStrand	1	1	-inf
chr13	19413510	19413611	LINE	L1Md_A	L1	chr13L1Md_A19411191	ProperStrand	1	chr17	39846511	39846728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847271	39847325	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	88923716	88923780	LTR	RLTR20B1	ERVK	chr3RLTR20B188923286	ProperStrand	1	1	-inf
chr17	39847174	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	75211280	75211364	protein_coding	Stk16	utr3	ENSMUSG00000026201	ProperStrand	1	1	-inf
chr9	112432042	112432142	Low_complexity	CT-rich	Low_complexity	chr9CT-rich112431982	NonProperStrand	1	chr9	112432244	112432334	Simple_repeat	(TTCTC)n	Simple_repeat	chr9(TTCTC)n112432156	NonProperStrand	1	1	-inf
chr17	39847207	39847251	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	46934127	46934143	protein_coding	Ap3s1	intron	ENSMUSG00000024480	ProperStrand	7	1	-3.6430
chr5	28408281	28408371	LTR	RLTR11A	ERVK	chr5RLTR11A28408279	ProperStrand	14	chr9	123461812	123461912	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr8	105525209	105525387	LINE	L1MCa	L1	chr8L1MCa105524744	NonProperStrand	4	chr8	105529176	105530837	LINE	L1Md_F2	L1	chr8L1Md_F2105529021	NonProperStrand	1	1	-inf
chr10	44676541	44676631	LINE	HAL1-3A_ME	L1	chr10HAL1-3A_ME44676545	ProperStrand	1	chr10	44676356	44676456	LINE	L1Md_F2	L1	chr10L1Md_F244675522	NonProperStrand	1	1	-inf
chr11	109011744	109011769	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	103592932	103593067	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-4.4973
chr17	39845774	39845848	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr10	32827122	32827179	protein_coding	Trdn	intron	ENSMUSG00000019787	NonProperStrand	18	1	-4.4401
chr17	45567985	45568074	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-3.4813
chr16	94590387	94590470	protein_coding	Pigp	intron	ENSMUSG00000022940	NonProperStrand	42	chr16	97763005	97763078	protein_coding	Mx2	intron	ENSMUSG00000023341	NonProperStrand	3	1	-19.3993
chr12	47353485	47353575	LTR	RLTR10-int	ERVK	chr12RLTR10-int47353418	NonProperStrand	1	chr12	47353190	47353290	LTR	RLTR10	ERVK	chr12RLTR1047352928	NonProperStrand	1	1	-inf
chr12	79721776	79721877	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	chr17	47760846	47760889	protein_coding	Med20	utr3	ENSMUSG00000092558	ProperStrand	41	1	-7.6746
chr10	125670391	125670491	DNA	URR1B	MER1_type	chr10URR1B125670419	ProperStrand	1	chr10	125670802	125670892	LINE	Lx8	L1	chr10Lx8125670651	NonProperStrand	1	1	-inf
chr5	146835143	146835265	LINE	L1_Mur2	L1	chr5L1_Mur2146834958	ProperStrand	33	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-13.2997
chr17	27768071	27768143	protein_coding-noncoding	Rps10	utr3	ENSMUSG00000052146	ProperStrand	10	chr17	27786235	27793945	protein_coding	Pacsin1	intron	ENSMUSG00000040276	NonProperStrand	25	1	-17.4621
chr2	22744853	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr15	96418663	96418759	protein_coding	Slc38a1	intron	ENSMUSG00000023169	ProperStrand	51	1	-7.1317
chr5	105798608	105798701	LINE	L1Md_F2	L1	chr5L1Md_F2105797620	NonProperStrand	27	chr5	105777795	105777854	LINE	L1_Mus1	L1	chr5L1_Mus1105776068	NonProperStrand	12	1	-16.9193
chr1	72842761	72842822	LTR	RMER19B	ERVK	chr1RMER19B72842647	NonProperStrand	5	chr9	123461883	123461954	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr11	49805552	49805642	Simple_repeat	(AGGTG)n	Simple_repeat	chr11(AGGTG)n49805571	ProperStrand	1	chr11	93915113	93915213	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	1	-inf
chr13	117977899	117977917	LTR	ORR1B1	MaLR	chr13ORR1B1117977748	NonProperStrand	1	chr17	39847459	39847487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr18	72603404	72603494	LINE	L1_Mur3	L1	chr18L1_Mur372602651	ProperStrand	1	chr18	72603651	72603751	LINE	L1_Mur3	L1	chr18L1_Mur372603588	ProperStrand	1	1	-inf
chr5	146261169	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	37458211	37458335	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	2	-7.4598
chr7	49815755	49815845	LTR	ORR1A1	MaLR	chr7ORR1A149815487	ProperStrand	1	chr7	49815894	49815994	LTR	RLTR25B	ERVK	chr7RLTR25B49815832	NonProperStrand	1	1	-inf
chrX	47657405	47657505	LINE	L1_Mur2	L1	chrXL1_Mur247655824	NonProperStrand	1	chrX	47657702	47657792	LINE	Lx2	L1	chrXLx247657711	ProperStrand	1	1	-inf
chr7	116297138	116297177	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.9882
chr6	11764877	11764977	LINE	L1Md_F3	L1	chr6L1Md_F311763808	ProperStrand	2	chr6	11765193	11765283	LTR	RLTR10C	ERVK	chr6RLTR10C11765118	NonProperStrand	1	1	-inf
chr2	52078253	52078279	protein_coding	Neb	exon	ENSMUSG00000026950	NonProperStrand	137	chr9	83846195	83846317	protein_coding	Bckdhb	intron	ENSMUSG00000032263	ProperStrand	63	1	-10.2668
chr19	53372278	53372368	LINE	L1MA8	L1	chr19L1MA853372090	NonProperStrand	3	chr19	53372461	53372561	SINE	B4A	B4	chr19B4A53372412	NonProperStrand	2	2	-inf
chr17	39847222	39847275	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	81265057	81265076	protein_coding	9430031J16Rik	intron	ENSMUSG00000054976	NonProperStrand	6	1	-3.9545
chr5	140945281	140945302	LINE	L3	CR1	chr5L3140945261	ProperStrand	1	chr5	24453943	24454072	protein_coding	Prkag2	intron	ENSMUSG00000028944	NonProperStrand	128	1	-inf
chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr1	151756822	151756844	protein_coding	Pla2g4a	intron	ENSMUSG00000056220	NonProperStrand	25	1	-6.2637
chr9	21265397	21265423	protein_coding	Dnm2	intron	ENSMUSG00000033335	ProperStrand	26	chr2	5379307	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.1854
chr10	38472577	38472667	LINE	L1Md_F	L1	chr10L1Md_F38470432	ProperStrand	1	chr10	38473009	38473109	LINE	L1Md_F	L1	chr10L1Md_F38472878	ProperStrand	1	1	-inf
chr13	9834315	9834422	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr8	106883842	106883870	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	1	-7.5488
chr17	39847107	39847173	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	61555715	61555733	protein_coding	Ppargc1b	intron	ENSMUSG00000033871	ProperStrand	7	1	-3.6430
chr2	76378971	76379071	protein_coding-noncoding	Osbpl6	utr5	ENSMUSG00000042359	ProperStrand	1	chr2	76380368	76380458	protein_coding	Osbpl6	intron	ENSMUSG00000042359	ProperStrand	35	1	-inf
chr17	39846353	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	160195259	160199478	protein_coding	Fam5b	intron	ENSMUSG00000004031	NonProperStrand	9	2	-3.9140
chr3	95622724	95622824	protein_coding	Rprd2	utr5	ENSMUSG00000028106	NonProperStrand	18	chr17	27631218	27632331	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	2	-18.3415
chr15	50033364	50033454	LTR	MTD	MaLR	chr15MTD50033322	ProperStrand	1	chr15	50033186	50033286	LTR	ORR1C2	MaLR	chr15ORR1C250032942	ProperStrand	1	1	-inf
chr17	56205780	56206786	protein_coding	Chaf1a	intron	ENSMUSG00000002835	NonProperStrand	23	chr17	56206812	56206902	protein_coding	Ubxn6	utr3	ENSMUSG00000019578	ProperStrand	8	4	-20.9271
chr7	110037881	110037928	SINE	MIRm	MIR	chr7MIRm110037782	NonProperStrand	1	chr15	79970709	79970772	protein_coding	Tab1	intron	ENSMUSG00000022414	NonProperStrand	44	1	-inf
chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	108012756	108014856	protein_coding	Sypl2	utr3	ENSMUSG00000027887	ProperStrand	4	1	-3.6552
chr17	39846462	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	27993009	27993027	LTR	MLT1B	MaLR	chr8MLT1B27992871	NonProperStrand	1	1	-inf
chr1	177223544	177223641	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	chr6	147031580	147031603	protein_coding	Gm5887	intron	ENSMUSG00000072662	NonProperStrand	6	1	-16.0906
chr7	101669088	101669178	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int101669030	NonProperStrand	2	chr7	101669216	101669316	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int101669241	NonProperStrand	2	2	-inf
chr9	62503757	62503857	SINE	B1_Mur2	Alu	chr9B1_Mur262503746	ProperStrand	3	chr9	62503631	62503721	SINE	ID_B1	B4	chr9ID_B162503536	ProperStrand	3	3	-inf
chr8	83996152	83996218	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	chr15	82851665	82851745	protein_coding	Nfam1	intron	ENSMUSG00000058099	ProperStrand	119	1	-8.7076
chr17	39842996	39843084	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr8	12627190	12627244	protein_coding	Tubgcp3	intron	ENSMUSG00000000759	ProperStrand	46	1	-5.9073
chr1	72244313	72244399	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	chr1	132504426	132504443	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	1	-12.8883
chr12	113034135	113034208	protein_coding	Klc1	intron	ENSMUSG00000021288	ProperStrand	57	chr15	101181468	101181531	protein_coding	Krt80	exon	ENSMUSG00000037185	NonProperStrand	51	1	-12.4542
chr1	63180385	63180419	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr1	121312609	121312668	protein_coding	Inhbb	utr3	ENSMUSG00000037035	ProperStrand	5	1	-16.7420
chr8	70176444	70176554	LINE	L1ME2	L1	chr8L1ME270176277	ProperStrand	1	chr17	39846452	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr18	65653135	65653174	LTR	RLTR10-int	ERVK	chr18RLTR10-int65651960	ProperStrand	9	chr2	29501996	29502072	protein_coding	Rapgef1	intron	ENSMUSG00000039844	ProperStrand	77	1	-15.4215
chr19	9877716	9877754	LINE	L1Md_A	L1	chr19L1Md_A9876975	NonProperStrand	1	chr9	123462007	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	134249886	134249956	LTR	MT2A	ERVL	chr5MT2A134249640	ProperStrand	2	chr2	106809809	106809872	protein_coding	2700007P21Rik	intron	ENSMUSG00000027122	NonProperStrand	9	1	-inf
chr11	108239036	108239136	protein_coding	Apoh	intron	ENSMUSG00000000049	NonProperStrand	36	chr11	108240059	108240149	sense_intronic	Gm11656	.	ENSMUSG00000084916	NonProperStrand	1	1	-inf
chr17	39846351	39846377	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	173215744	173215760	protein_coding-noncoding	Usp21	utr3	ENSMUSG00000053483	ProperStrand	1	1	-inf
chr2	29162520	29162604	SINE	B4	B4	chr2B429162512	ProperStrand	1	chr5	114851974	114852030	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chrX	87238359	87238385	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr14	78908204	78908240	protein_coding	Akap11	intron	ENSMUSG00000022016	NonProperStrand	27	1	-11.0959
chr13	66653682	66653760	Unknown	MurSatRep1	Unknown	chr13MurSatRep166653249	ProperStrand	1	chr6	146577520	146577544	protein_coding	Tm7sf3	intron	ENSMUSG00000040234	ProperStrand	11	1	-inf
chr11	49700936	49700998	LTR	MTEa	MaLR	chr11MTEa49700944	ProperStrand	1	chr8	84676568	84676620	LTR	RLTR25B	ERVK	chr8RLTR25B84676479	ProperStrand	5	1	-inf
chr19	23173929	23174030	LINE	L1M5	L1	chr19L1M523173888	NonProperStrand	1	chr19	23173758	23173848	SINE	B1_Mm	Alu	chr19B1_Mm23173727	ProperStrand	1	1	-inf
chr17	39847277	39847345	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	162906618	162906635	protein_coding	Mybl2	intron	ENSMUSG00000017861	NonProperStrand	5	1	-4.3348
chr10	5037366	5040795	protein_coding	Syne1	intron	ENSMUSG00000019769	NonProperStrand	18	chr9	123462112	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.2529
chr7	124977974	124978074	LINE	L1Md_F2	L1	chr7L1Md_F2124977650	NonProperStrand	1	chr10	122565815	122565905	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-inf
chr17	39846759	39846801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	128413778	128413895	pseudogene	Gm14008	.	ENSMUSG00000082350	ProperStrand	1	1	-inf
chr15	72895675	72895704	Low_complexity	AT_rich	Low_complexity	chr15AT_rich72895664	NonProperStrand	1	chr10	85890188	85890227	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	1	-inf
chr6	94256239	94256339	LINE	L1MB8	L1	chr6L1MB894255985	NonProperStrand	7	chr6	94256332	94256422	Simple_repeat	(TA)n	Simple_repeat	chr6(TA)n94256351	NonProperStrand	5	5	-inf
chr1	59798368	59798468	SINE	B1_Mus2	Alu	chr1B1_Mus259798384	NonProperStrand	1	chr1	59798589	59798679	SINE	B3	B2	chr1B359798546	NonProperStrand	1	1	-inf
chr5	41968776	41968866	LINE	MusHAL1	L1	chr5MusHAL141968228	ProperStrand	1	chr5	41969058	41969158	SINE	B1_Mm	Alu	chr5B1_Mm41969038	ProperStrand	1	1	-inf
chr17	39848007	39848064	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	104621293	104621359	protein_coding	Mov10	exon	ENSMUSG00000002227	ProperStrand	1	1	-inf
chr4	78133524	78133544	LINE	L1_Mus4	L1	chr4L1_Mus478133047	ProperStrand	2	chr4	132310239	132310370	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-17.1342
chr14	31804350	31804371	LINE	Lx3C	L1	chr14Lx3C31802888	ProperStrand	2	chr8	122987887	122987947	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-13.6507
chr1	152884595	152884681	LINE	L1_Mm	L1	chr1L1_Mm152884452	NonProperStrand	1	chr9	123462036	123462090	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	44869571	44869634	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	70982837	70982940	protein_coding	Nlrp1b	intron	ENSMUSG00000070390	ProperStrand	51	1	-4.8048
chr12	100320332	100320422	LTR	MLT1G1	MaLR	chr12MLT1G1100320228	ProperStrand	1	chr12	100320117	100320217	SINE	B1_Mus1	Alu	chr12B1_Mus1100320055	NonProperStrand	1	1	-inf
chr18	9877342	9877442	protein_coding	Colec12	utr3	ENSMUSG00000036103	NonProperStrand	14	chr3	40702781	40702871	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	NonProperStrand	16	1	-17.6629
chr6	142920567	142920632	LINE	L1VL2	L1	chr6L1VL2142920457	ProperStrand	1	chr17	39846818	39846856	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	5375476	5375547	DNA	URR1B	MER1_type	chr11URR1B5375468	ProperStrand	1	chr17	39847279	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39846465	39847152	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	20911436	20911455	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	20	7	-10.4234
chr15	80078498	80078525	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr3	85517202	85517324	protein_coding	Fam160a1	intron	ENSMUSG00000051000	ProperStrand	4	1	-13.7602
chr12	86176054	86176094	protein_coding	Ltbp2	intron	ENSMUSG00000002020	NonProperStrand	63	chr4	151784375	151784445	protein_coding	Kcnab2	intron	ENSMUSG00000028931	ProperStrand	216	1	-9.3567
chr5	115560738	115560841	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	165	chr7	8255033	8255050	protein_coding	Gm10302	intron	ENSMUSG00000070848	NonProperStrand	2	1	-17.4861
chr17	39845289	39845361	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr6	128838449	128838511	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	2	-7.4581
chr17	34950950	34951019	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr9	40804773	40804808	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-6.0679
chr10	79067168	79067198	DNA	URR1A	MER1_type	chr10URR1A79067020	ProperStrand	1	chr10	75169774	75169840	protein_coding	Cabin1	intron	ENSMUSG00000020196	NonProperStrand	65	1	-inf
chr11	86702264	86702283	LTR	RLTR4_MM-int	ERV1	chr11RLTR4_MM-int86696558	NonProperStrand	16	chr6	3201509	3201542	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-5.4054
chr17	39847823	39847854	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	46119835	46119920	SINE	ID4_	ID	chr17ID4_46119835	NonProperStrand	2	1	-5.4040
chr8	85084455	85084492	LTR	RMER19C	ERVK	chr8RMER19C85084460	NonProperStrand	8	chr5	124408389	124408461	protein_coding	Ccdc62	intron	ENSMUSG00000061882	NonProperStrand	30	1	-17.5395
chr18	24479164	24479264	LINE	L1VL2	L1	chr18L1VL224478821	NonProperStrand	2	chr18	24479308	24479398	SINE	B2_Mm1a	B2	chr18B2_Mm1a24479303	NonProperStrand	2	2	-inf
chr4	124396986	124397076	protein_coding	Sf3a3	intron	ENSMUSG00000028902	NonProperStrand	2	chr4	124396770	124396870	pseudogene	Gm12917	.	ENSMUSG00000083104	NonProperStrand	1	1	-inf
chr8	105528374	105528474	LINE	L1MCa	L1	chr8L1MCa105527747	NonProperStrand	7	chr17	56328259	56328349	protein_coding	Dpp9	intron	ENSMUSG00000001229	NonProperStrand	214	1	-13.8997
chr2	80330154	80330254	LINE	L1Md_F2	L1	chr2L1Md_F280329616	ProperStrand	3	chr10	85950049	85950139	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	3	-inf
chr10	128036558	128046196	SINE	B2_Mm2	B2	chr10B2_Mm2128038827	ProperStrand	1	chr11	59506822	59507228	protein_coding	Mprip	intron	ENSMUSG00000005417	ProperStrand	15	1	-inf
chr5	146261004	146261070	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	42228092	42228148	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	NonProperStrand	45	1	-5.6243
chr4	132270147	132270186	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr10	72838134	72838233	protein_coding	Pcdh15	intron	ENSMUSG00000052613	ProperStrand	94	1	-9.9214
chr16	58463894	58463984	protein_coding	Dcbld2	intron	ENSMUSG00000035107	ProperStrand	36	chr15	93251170	93251270	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	1	-13.2299
chr17	39848480	39848545	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	95490650	95490696	protein_coding	Adamtsl4	intron	ENSMUSG00000015850	NonProperStrand	7	1	-5.7189
chr3	26321224	26321241	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr4	116610511	116610642	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-12.2709
chr16	98063114	98063204	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	chr2	154036222	154036322	protein_coding	Bpifb1	intron	ENSMUSG00000027485	NonProperStrand	1	1	-inf
chr6	127471093	127471193	DNA	MER44C	MER2_type	chr6MER44C127471019	NonProperStrand	1	chr6	127470904	127470994	LTR	RLTRETN_Mm	ERVK	chr6RLTRETN_Mm127470666	ProperStrand	1	1	-inf
chr11	85736154	85736257	DNA	URR1A	MER1_type	chr11URR1A85736117	ProperStrand	1	chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	23551602	23551666	protein_coding	Btn1a1	intron	ENSMUSG00000000706	ProperStrand	29	chr15	96408403	96408494	protein_coding	Slc38a1	intron	ENSMUSG00000023169	ProperStrand	51	1	-13.8212
chr4	42980587	42980627	LINE	L1_Rod	L1	chr4L1_Rod42980421	NonProperStrand	4	chr4	42983130	42983414	protein_coding	1700022I11Rik	intron	ENSMUSG00000028451	NonProperStrand	11	1	-inf
chr15	6758312	6758333	LTR	MMERVK10C-int	ERVK	chr15MMERVK10C-int6757919	NonProperStrand	1	chr17	45691064	45691107	SINE	B3	B2	chr17B345691010	NonProperStrand	1	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	104528819	104528897	protein_coding	C8a	intron	ENSMUSG00000035031	NonProperStrand	68	1	-6.5603
chr7	5390168	5390258	LINE	L1Md_F2	L1	chr7L1Md_F25389166	ProperStrand	1	chr7	5390465	5390565	LINE	L1Md_F2	L1	chr7L1Md_F25390299	ProperStrand	1	1	-inf
chr11	69521552	69521642	LTR	RLTR9A	ERVK	chr11RLTR9A69521498	NonProperStrand	1	chr11	69521304	69521404	SINE	B1_Mus1	Alu	chr11B1_Mus169521307	ProperStrand	1	1	-inf
chr13	112807274	112807311	lincRNA	Gm15323	intron	ENSMUSG00000086092	ProperStrand	6	chr13	97190551	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr4	3568615	3568645	LINE	L1Md_A	L1	chr4L1Md_A3568621	NonProperStrand	1	chr4	3568373	3568487	LINE	L1Md_F3	L1	chr4L1Md_F33568268	ProperStrand	1	1	-inf
chr15	11565313	11565332	LINE	L1Md_F2	L1	chr15L1Md_F211564539	ProperStrand	2	chr4	129247559	129247625	protein_coding	Lck	intron	ENSMUSG00000000409	NonProperStrand	5	1	-inf
chr7	29447962	29448050	SINE	B2_Mm2	B2	chr7B2_Mm229447987	NonProperStrand	2	chr9	123462129	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39846409	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	85203440	85203471	SINE	B1_Mus1	Alu	chr17B1_Mus185203352	ProperStrand	1	1	-inf
chrX	104299886	104300156	protein_coding	P2ry10	utr3	ENSMUSG00000050921	NonProperStrand	6	chr7	99441184	99441200	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-12.1762
chr17	53047309	53047325	Simple_repeat	(CA)n	Simple_repeat	chr17(CA)n53047309	ProperStrand	1	chr15	47539994	47540119	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-inf
chr11	119436697	119436775	LINE	Lx7	L1	chr11Lx7119436146	ProperStrand	2	chr1	136364889	136364957	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-17.8206
chr17	39843707	39843827	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	163779870	163779886	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	19	1	-5.1560
chr10	101493214	101493232	protein_coding	Mgat4c	intron	ENSMUSG00000019888	ProperStrand	16	chr4	148540113	148540391	protein_coding	Pgd	intron	ENSMUSG00000028961	NonProperStrand	19	1	-17.0151
chr17	39844018	39844072	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr18	84220475	84220539	protein_coding	Tshz1	intron	ENSMUSG00000046982	ProperStrand	86	1	-3.3210
chr1	156039153	156039243	SINE	B1_Mur1	Alu	chr1B1_Mur1156039139	NonProperStrand	1	chr1	156039289	156039389	Simple_repeat	(TTCC)n	Simple_repeat	chr1(TTCC)n156039288	ProperStrand	1	1	-inf
chr11	71495145	71495235	LINE	L1ME1	L1	chr11L1ME171494598	NonProperStrand	1	chr11	71495278	71495378	LTR	ORR1D1	MaLR	chr11ORR1D171495252	ProperStrand	1	1	-inf
chr1	134597661	134599081	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr4	117281176	117281219	protein_coding	Eri3	intron	ENSMUSG00000033423	NonProperStrand	110	1	-8.1782
chr4	132352884	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	276	chr2	166797240	166797258	protein_coding	Stau1	intron	ENSMUSG00000039536	NonProperStrand	40	1	-9.7815
chr2	98667207	98667307	LINE	L1Md_F2	L1	chr2L1Md_F298667138	ProperStrand	27	chr9	35305448	35305538	protein_coding	Cdon	intron	ENSMUSG00000038119	ProperStrand	8	1	-17.7233
chr7	27636278	27636392	LINE	L1_Mur3	L1	chr7L1_Mur327636189	ProperStrand	1	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	84037280	84037401	LINE	L1VL4	L1	chr9L1VL484036126	ProperStrand	3	chr13	97190594	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr2	85215374	85215474	LINE	L1VL2	L1	chr2L1VL285215116	ProperStrand	1	chr2	85114963	85115053	LINE	Lx9	L1	chr2Lx985114824	NonProperStrand	1	1	-inf
chr6	65124408	65124499	LINE	L1M2	L1	chr6L1M265124307	NonProperStrand	1	chr4	106720764	106720781	protein_coding	Ssbp3	utr3	ENSMUSG00000061887	NonProperStrand	25	1	-inf
chr18	78263734	78263824	LINE	L1M2	L1	chr18L1M278263679	NonProperStrand	1	chr18	78263606	78263706	LINE	L1M3	L1	chr18L1M378263559	NonProperStrand	1	1	-inf
chr17	39846032	39846122	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr18	53406890	53406990	protein_coding	Snx24	intron	ENSMUSG00000024535	NonProperStrand	14	1	-4.6359
chr6	120496369	120496458	LTR	RLTR16	ERVK	chr6RLTR16120496019	ProperStrand	1	chr4	128580259	128580315	protein_coding-noncoding	Trim62	utr3	ENSMUSG00000041000	NonProperStrand	1	1	-inf
chr3	53112465	53112579	LTR	ORR1D2	MaLR	chr3ORR1D253112474	ProperStrand	1	chr4	32686368	32686415	protein_coding	Gja10	intron	ENSMUSG00000051056	NonProperStrand	1	1	-inf
chr1	88300567	88300667	LINE	L1MC4	L1	chr1L1MC488300591	NonProperStrand	1	chr1	88300328	88300418	SINE	B1_Mur1	Alu	chr1B1_Mur188300268	NonProperStrand	1	1	-inf
chr3	32574471	32574509	DNA	MER2	MER2_type	chr3MER232574270	ProperStrand	1	chr3	32575308	32575406	Other	RMER1B	Other	chr3RMER1B32575088	ProperStrand	1	1	-inf
chr17	93954013	93954103	LINE	L1MA5	L1	chr17L1MA593953833	ProperStrand	1	chr17	93954112	93954212	LTR	RLTR9A	ERVK	chr17RLTR9A93954107	NonProperStrand	1	1	-inf
chr11	88844294	88844385	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	chr13	97190552	97190577	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.2609
chr2	3588743	3588833	Simple_repeat	(TATG)n	Simple_repeat	chr2(TATG)n3588733	NonProperStrand	1	chr2	3588596	3588696	Simple_repeat	(TCCC)n	Simple_repeat	chr2(TCCC)n3588616	NonProperStrand	1	1	-inf
chr17	39847891	39847928	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	54001966	54001999	Other	RMER1B	Other	chr4RMER1B54001522	NonProperStrand	1	1	-inf
chr17	39847764	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	64412193	64412283	SINE	B3A	B2	chr5B3A64412161	NonProperStrand	1	1	-inf
chr6	108807429	108807472	protein_coding	Edem1	utr3	ENSMUSG00000030104	ProperStrand	32	chr10	7589253	7589370	protein_coding	Zc3h12d	utr3	ENSMUSG00000039981	NonProperStrand	3	1	-19.2250
chr18	78860115	78860205	LINE	L1_Mur3	L1	chr18L1_Mur378860051	ProperStrand	1	chr18	78860281	78860381	LINE	Lx8	L1	chr18Lx878860195	ProperStrand	1	1	-inf
chr5	137638558	137638622	Satellite	ZP3AR	Satellite	chr5ZP3AR137638439	ProperStrand	6	chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-14.1920
chr1	39938042	39938101	LINE	L1_Mur3	L1	chr1L1_Mur339937677	ProperStrand	2	chr17	39847980	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr16	22407468	22407554	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr8	125535517	125535571	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-5.1534
chr6	74463743	74463833	LINE	Lx2B	L1	chr6Lx2B74463758	ProperStrand	1	chr6	74463495	74463595	LINE	Lx9	L1	chr6Lx974463314	ProperStrand	1	1	-inf
chr16	32893285	32893360	protein_coding	Fyttd1	intron	ENSMUSG00000022800	ProperStrand	23	chr10	89640694	89640730	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	65	1	-13.8074
chr8	78147608	78147707	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	chr18	60776936	60776972	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	1	-6.0524
chr1	161035849	161035868	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr9	59323216	59323272	protein_coding	Arih1	intron	ENSMUSG00000025234	NonProperStrand	60	1	-12.6959
chr5	132483711	132483825	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr9	40148459	40148499	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-3.4092
chr11	20228689	20228753	protein_coding	Slc1a4	intron	ENSMUSG00000020142	NonProperStrand	34	chr18	84807723	84807818	protein_coding	Cndp1	intron	ENSMUSG00000056162	ProperStrand	26	1	-14.8658
chr4	83329318	83329371	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	chr12	118299105	118299146	protein_coding	Ptprn2	intron	ENSMUSG00000056553	NonProperStrand	35	1	-11.8393
chr11	68372148	68372248	SINE	B2_Mm1a	B2	chr11B2_Mm1a68372081	ProperStrand	13	chr11	68372267	68372357	SINE	B4	B4	chr11B468372277	ProperStrand	2	2	-inf
chr11	62478557	62478578	protein_coding	Mmgt2	exon	ENSMUSG00000048497	ProperStrand	7	chr1	84842023	84842155	protein_coding	Fbxo36	intron	ENSMUSG00000073633	NonProperStrand	31	2	-inf
chr2	120862715	120864354	protein_coding	Epb4.2	utr5	ENSMUSG00000023216	ProperStrand	4	chr9	123462131	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr17	39846410	39846464	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	33049965	33050009	protein_coding	Iqcg	exon	ENSMUSG00000035578	ProperStrand	1	1	-inf
chr17	39847552	39847652	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	36462566	36462623	protein_coding	Pcgf5	intron	ENSMUSG00000024805	ProperStrand	5	1	-3.2379
chr12	91668275	91668308	LINE	L1Md_F2	L1	chr12L1Md_F291668169	NonProperStrand	2	chr8	84172894	84172937	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-17.4998
chr19	4777620	4777753	SINE	B1F2	Alu	chr19B1F24777620	NonProperStrand	2	chr19	4777738	4777832	SINE	PB1D9	Alu	chr19PB1D94777753	NonProperStrand	2	2	-inf
chr2	22744866	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	138170351	138170392	SINE	RSINE1	B4	chr5RSINE1138170312	ProperStrand	1	1	-inf
chr17	39846941	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	155650492	155650556	protein_coding	Eif6	intron	ENSMUSG00000027613	ProperStrand	2	1	-5.3533
chr11	69669635	69669693	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr18	12809639	12809688	protein_coding	Ttc39c	intron	ENSMUSG00000024424	NonProperStrand	39	1	-9.8839
chr10	59337097	59339318	LINE	L2b	L2	chr10L2b59337090	NonProperStrand	1	chr10	59348189	59348256	protein_coding	Dnajb12	intron	ENSMUSG00000020109	ProperStrand	15	1	-inf
chr14	21075876	21075966	Simple_repeat	(GGA)n	Simple_repeat	chr14(GGA)n21075843	ProperStrand	1	chr14	21076103	21076203	Simple_repeat	(GGA)n	Simple_repeat	chr14(GGA)n21076067	ProperStrand	2	1	-inf
chr3	159403211	159403311	SINE	B1F1	Alu	chr3B1F1159403215	NonProperStrand	1	chr3	159403003	159403093	SINE	MIR	MIR	chr3MIR159403015	ProperStrand	1	1	-inf
chr16	18896723	18925790	protein_coding-noncoding	Hira	utr5	ENSMUSG00000022702	ProperStrand	5	chr16	18896840	18925663	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	5	-inf
chr6	3201509	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	12449937	12449954	protein_coding	Sema3d	intron	ENSMUSG00000040254	ProperStrand	5	1	-7.8442
chr1	152047266	152047321	LTR	RLTR13D6	ERVK	chr1RLTR13D6152047065	ProperStrand	1	chr9	123461997	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	4355453	4355484	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr9	103566274	103566388	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-8.1125
chr17	39847636	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr16	11144117	11144207	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	23	1	-14.2566
chr17	39847442	39847470	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	20819094	20819194	Other	RMER1B	Other	chr16RMER1B20819050	ProperStrand	1	1	-inf
chr5	144119688	144119759	protein_coding	Grid2ip	intron	ENSMUSG00000010825	ProperStrand	61	chr16	20692486	20692566	protein_coding	Eif4g1	utr3	ENSMUSG00000045983	ProperStrand	123	1	-10.5475
chr11	109011809	109011844	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	157536494	157536560	SINE	B4	B4	chr3B4157536473	ProperStrand	2	1	-13.5345
chr17	39847823	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	91002430	91002497	protein_coding	Sh3bp4	intron	ENSMUSG00000036206	ProperStrand	5	1	-3.2379
chr16	10419665	10420335	protein_coding-noncoding	Nubp1	utr5	ENSMUSG00000022503	ProperStrand	2	chr16	10413740	10419669	protein_coding	Nubp1	intron	ENSMUSG00000022503	ProperStrand	11	1	-21.2279
chr9	118674951	118675011	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr3	108426715	108426812	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	57	1	-6.0719
chr7	67394312	67394402	LINE	L1_Mus3	L1	chr7L1_Mus367393886	ProperStrand	1	chr7	67394627	67394727	LTR	RMER19C	ERVK	chr7RMER19C67394644	ProperStrand	1	1	-inf
chr14	79861252	79861352	protein_coding	Wbp4	utr3	ENSMUSG00000022023	NonProperStrand	30	chr12	91229320	91229410	protein_coding	Nrxn3	intron	ENSMUSG00000066392	NonProperStrand	182	1	-11.1965
chr10	11406393	11406493	LTR	IAP-d-int	ERVK	chr10IAP-d-int11404366	NonProperStrand	2	chr16	98063393	98063483	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	1	-19.5799
chr4	13828009	13828099	LINE	L1_Mus3	L1	chr4L1_Mus313827605	NonProperStrand	2	chr16	35850097	35850197	protein_coding	Parp14	intron	ENSMUSG00000034422	ProperStrand	5	2	-inf
chr14	8613270	8613331	processed_transcript	Gm10044	.	ENSMUSG00000072723	ProperStrand	28	chr6	119939639	119939692	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	1	-13.3429
chr12	8239587	8239687	protein_coding	1110057K04Rik	intron	ENSMUSG00000037669	NonProperStrand	6	chr12	3760545	3760635	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	1	-15.3433
chr17	39846598	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	92369975	92370574	lincRNA	Gm13817	exon	ENSMUSG00000085293	NonProperStrand	1	1	-inf
chr11	102568080	102568103	LTR	ERVL-B4-int	ERVL	chr11ERVL-B4-int102568082	NonProperStrand	5	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr13	14354083	14354173	protein_coding	Hecw1	intron	ENSMUSG00000021301	NonProperStrand	6	chr13	14388324	14388424	protein_coding	Hecw1	intron	ENSMUSG00000021301	ProperStrand	10	1	-21.3688
chr2	22744888	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	168011155	168011174	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	4	1	-12.4656
chr11	20236398	20236488	SINE	B4A	B4	chr11B4A20236291	NonProperStrand	2	chr11	20236511	20236611	SINE	ID_B1	B4	chr11ID_B120236535	NonProperStrand	3	2	-inf
chr16	35981617	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr2	84642332	84642390	protein_coding	Ube2l6	intron	ENSMUSG00000027078	NonProperStrand	7	1	-14.3148
chr14	66986831	66986855	LINE	L1M2	L1	chr14L1M266986768	NonProperStrand	3	chr4	34796969	34797091	protein_coding	Zfp292	intron	ENSMUSG00000039967	ProperStrand	60	2	-inf
chr17	39847823	39847952	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	94491348	94491365	protein_coding	Lrrc59	exon	ENSMUSG00000020869	NonProperStrand	1	1	-inf
chr7	68010664	68010712	LINE	L1_Mur1	L1	chr7L1_Mur168010107	ProperStrand	8	chr1	93434229	93434267	SINE	B1_Mus1	Alu	chr1B1_Mus193434198	NonProperStrand	1	1	-inf
chr1	59696052	59698365	SINE	B2_Mm1t	B2	chr1B2_Mm1t59695898	NonProperStrand	1	chr1	59698376	59700901	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	1	-inf
chr14	21031116	21031239	LINE	Lx8	L1	chr14Lx821030800	ProperStrand	1	chr7	109520601	109520637	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-inf
chr11	28708763	28708783	lincRNA	Gm12082	intron	ENSMUSG00000085510	NonProperStrand	4	chr18	35476588	35476638	protein_coding	Sil1	intron	ENSMUSG00000024357	ProperStrand	39	1	-18.7700
chr15	100539191	100539291	protein_coding	Galnt6	intron	ENSMUSG00000037280	NonProperStrand	2	chr15	100484299	100484389	protein_coding	Bin2	intron	ENSMUSG00000075411	NonProperStrand	4	1	-22.1285
chr5	138301167	138301230	LTR	RLTR10B2	ERVK	chr5RLTR10B2138300917	ProperStrand	6	chr9	123462034	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr11	6358075	6358131	SINE	B2_Mm2	B2	chr11B2_Mm26357958	NonProperStrand	2	chr10	63077355	63077455	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-17.2167
chr4	133169458	133169548	protein_coding-noncoding	Zdhhc18	utr3	ENSMUSG00000037553	NonProperStrand	1	chr4	133169548	133169648	protein_coding	Zdhhc18	intron	ENSMUSG00000037553	NonProperStrand	56	1	-inf
chr1	106171917	106171938	LINE	L1Md_T	L1	chr1L1Md_T106170353	NonProperStrand	19	chr4	84596123	84596246	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	1	-13.8814
chr17	39843706	39843770	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr10	128211275	128211329	SINE	ID_B1	B4	chr10ID_B1128211230	ProperStrand	1	1	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	19606506	19606624	protein_coding	Foxa3	intron	ENSMUSG00000040891	ProperStrand	7	2	-4.6854
chr7	107322544	107322576	SINE	MIRb	MIR	chr7MIRb107322510	NonProperStrand	1	chr3	65534220	65534306	protein_coding	Lekr1	intron	ENSMUSG00000074579	ProperStrand	25	1	-inf
chr13	95350801	95350848	LTR	MTEa	MaLR	chr13MTEa95350717	NonProperStrand	1	chr7	120688406	120688468	protein_coding	Far1	intron	ENSMUSG00000030759	ProperStrand	49	1	-inf
chr2	118278751	118278773	protein_coding	Eif2ak4	intron	ENSMUSG00000005102	ProperStrand	6	chr2	165821864	165821943	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	1	-13.5893
chr17	11622650	11622666	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr17	35967067	35967202	protein_coding	Flot1	intron	ENSMUSG00000059714	NonProperStrand	20	1	-11.9697
chr17	39848098	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	141175834	141175879	protein_coding	Slc25a34	utr3	ENSMUSG00000040740	NonProperStrand	6	1	-5.7734
chr6	55935544	55935644	LINE	Lx5	L1	chr6Lx555934966	ProperStrand	1	chr6	55898518	55898608	protein_coding	Ccdc129	intron	ENSMUSG00000037973	ProperStrand	10	1	-inf
chr3	97209817	97209938	LINE	Lx5	L1	chr3Lx597209569	NonProperStrand	2	chr13	97190561	97190597	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr17	39846411	39846790	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	76691765	76694858	protein_coding	Zfp251	intron	ENSMUSG00000022526	NonProperStrand	14	4	-6.3089
chr17	39846453	39846490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	4818373	4818419	SINE	PB1D7	Alu	chr12PB1D74818382	ProperStrand	1	1	-inf
chr17	39846822	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	4856485	4856608	protein_coding	Ctsf	intron	ENSMUSG00000083282	ProperStrand	2	1	-5.3533
chr3	3791642	3791732	LINE	L1Md_F2	L1	chr3L1Md_F23790855	ProperStrand	1	chr3	3791906	3792006	pseudogene	Rps24-ps2	.	ENSMUSG00000069125	ProperStrand	1	1	-inf
chr17	4082707	4082797	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr2	15597187	15597287	lincRNA	Gm13364	intron	ENSMUSG00000085942	NonProperStrand	2	1	-18.2078
chr9	16600227	16600328	LINE	L1Md_F2	L1	chr9L1Md_F216600024	NonProperStrand	1	chr9	16601356	16601446	LINE	L1_Mus1	L1	chr9L1_Mus116601017	NonProperStrand	1	1	-inf
chr17	39847102	39847170	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	12011110	12011131	protein_coding	Patl1	intron	ENSMUSG00000046139	NonProperStrand	6	1	-3.9545
chr9	72665731	72665785	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	chrX	164426735	164426830	protein_coding	Frmpd4	intron	ENSMUSG00000049176	NonProperStrand	76	2	-13.0407
chr6	83693421	83693440	protein_coding	Atp6v1b1	intron	ENSMUSG00000006269	ProperStrand	2	chr5	115489528	115489603	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-16.6631
chr17	19412325	19412425	LINE	L1VL1	L1	chr17L1VL119411121	ProperStrand	1	chr17	19412547	19412637	LINE	L1_Mus1	L1	chr17L1_Mus119412439	NonProperStrand	1	1	-inf
chr12	99213351	99213459	LTR	RMER17D	ERVK	chr12RMER17D99213292	NonProperStrand	7	chr12	99213496	99213588	Simple_repeat	(CATA)n	Simple_repeat	chr12(CATA)n99213518	NonProperStrand	6	6	-inf
chr14	50810504	50810550	LINE	L1_Rod	L1	chr14L1_Rod50809600	NonProperStrand	4	chr5	146261008	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-10.6768
chr17	39847220	39847239	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	68536989	68537097	LTR	IAPEz-int	ERVK	chr3IAPEz-int68536806	ProperStrand	3	1	-5.4882
chr3	82953153	82953185	LINE	L1MA6	L1	chr3L1MA682953061	ProperStrand	1	chr5	114350608	114350626	protein_coding	Coro1c	intron	ENSMUSG00000004530	NonProperStrand	3	1	-inf
chr10	80229013	80229113	protein_coding-noncoding	Dot1l	utr5	ENSMUSG00000061589	ProperStrand	1	chr10	80228334	80228424	protein_coding	Dot1l	intron	ENSMUSG00000061589	ProperStrand	91	1	-inf
chr9	78479699	78479852	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr2	40556429	40556497	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-7.6095
chr2	102829380	102829459	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr11	29732704	29732752	protein_coding	Eml6	intron	ENSMUSG00000044072	NonProperStrand	99	1	-8.8714
chr9	110281307	110281338	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr11	69653012	69653138	protein_coding	1810027O10Rik	utr3	ENSMUSG00000070394	ProperStrand	1	1	-inf
chr11	61839284	61839313	protein_coding	Specc1	intron	ENSMUSG00000042331	NonProperStrand	50	chr5	92052592	92052632	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-9.7846
chr17	39847656	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	117379228	117379302	LTR	RLTR20D	ERVK	chr5RLTR20D117379064	ProperStrand	1	1	-inf
chr2	177478968	177479058	LINE	L1VL1	L1	chr2L1VL1177476150	NonProperStrand	6	chr15	44609124	44609224	protein_coding	Sybu	intron	ENSMUSG00000022340	ProperStrand	4	1	-inf
chr8	77580651	77580711	protein_coding	Tom1	intron	ENSMUSG00000042870	ProperStrand	14	chr17	30604093	30612540	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-10.1885
chr17	39847804	39847839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	120393447	120393480	protein_coding	Snap23	utr5	ENSMUSG00000027287	NonProperStrand	3	1	-4.3512
chr16	20681460	20681550	protein_coding-noncoding	Eif4g1	utr5	ENSMUSG00000045983	ProperStrand	4	chr16	20681564	20681822	protein_coding	Eif4g1	intron	ENSMUSG00000045983	ProperStrand	123	2	-21.2443
chrX	17548036	17548136	LTR	ORR1A3-int	MaLR	chrXORR1A3-int17548013	NonProperStrand	1	chrX	17548182	17548272	LTR	ORR1B1	MaLR	chrXORR1B117548110	ProperStrand	1	1	-inf
chr11	58118847	58118949	SINE	B1_Mur4	Alu	chr11B1_Mur458118816	NonProperStrand	1	chr13	97190561	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr2	161091934	161092006	LINE	L3	CR1	chr2L3161091557	ProperStrand	1	chr9	123461959	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	110281287	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	2	-7.8390
chr9	123462153	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	90702384	90702443	protein_coding	Mtch2	intron	ENSMUSG00000027282	ProperStrand	13	1	-3.8693
chr4	53621800	53621924	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	chr4	125711869	125711885	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	1	-11.3558
chr10	40258531	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr9	58876371	58876388	protein_coding	Neo1	intron	ENSMUSG00000032340	NonProperStrand	25	2	-11.4438
chr6	72768933	72769023	LINE	L1M4	L1	chr6L1M472768938	NonProperStrand	3	chr6	72768824	72768924	SINE	RSINE1	B4	chr6RSINE172768815	NonProperStrand	3	3	-inf
chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	chr9	70406897	70406999	protein_coding	Sltm	intron	ENSMUSG00000032212	ProperStrand	15	1	-16.7697
chr15	51883319	51883409	LINE	Lx	L1	chr15Lx51882808	NonProperStrand	2	chr5	48546867	48546967	protein_coding	Slit2	intron	ENSMUSG00000031558	ProperStrand	20	1	-20.4416
chr3	18421756	18421846	LINE	Lx7	L1	chr3Lx718421659	NonProperStrand	1	chr3	18421534	18421634	SINE	B1_Mus2	Alu	chr3B1_Mus218421516	NonProperStrand	1	1	-inf
chr12	36377953	36378035	LINE	L1Md_F2	L1	chr12L1Md_F236377947	ProperStrand	1	chr2	156391924	156391992	protein_coding	0610011L14Rik	intron	ENSMUSG00000027628	NonProperStrand	56	1	-inf
chr10	40258605	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr10	63309431	63309495	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-3.2119
chrX	36914849	36914949	LINE	L1MEd	L1	chrXL1MEd36914514	ProperStrand	2	chrX	36914967	36915057	LTR	ORR1E	MaLR	chrXORR1E36914948	NonProperStrand	2	2	-inf
chr4	87134982	87135002	Simple_repeat	(TA)n	Simple_repeat	chr4(TA)n87134985	NonProperStrand	1	chr13	97190595	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr7	10735719	10735819	LINE	L1_Mus1	L1	chr7L1_Mus110732963	ProperStrand	1	chr7	10736134	10736224	LINE	Lx5	L1	chr7Lx510736042	ProperStrand	1	1	-inf
chr2	20749232	20749260	LTR	MTA_Mm	MaLR	chr2MTA_Mm20749208	ProperStrand	1	chr4	86855927	86856152	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	1	-inf
chr13	93171165	93171247	LINE	Lx	L1	chr13Lx93170517	ProperStrand	2	chr17	39846759	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	15747139	15747188	SINE	B3	B2	chr17B315747043	NonProperStrand	1	chr6	87702774	87702804	protein_coding	Ccdc48	intron	ENSMUSG00000068263	NonProperStrand	1	1	-inf
chr2	34526018	34526108	LTR	MTE2a	MaLR	chr2MTE2a34525968	ProperStrand	1	chr2	34526472	34526572	SINE	B2_Mm1a	B2	chr2B2_Mm1a34526388	NonProperStrand	1	1	-inf
chr7	136703549	136703639	LTR	IAPEz-int	ERVK	chr7IAPEz-int136703441	ProperStrand	1	chr7	136703280	136703380	LTR	IAPLTR1_Mm	ERVK	chr7IAPLTR1_Mm136703081	ProperStrand	1	1	-inf
chr17	39847611	39847637	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	110620877	110621006	Other	RMER1B	Other	chr12RMER1B110620754	NonProperStrand	2	1	-5.4040
chr8	87498139	87498230	protein_coding	Prdx2	utr3	ENSMUSG00000005161	ProperStrand	12	chr8	87492713	87492756	protein_coding	Rnaseh2a	intron	ENSMUSG00000052926	NonProperStrand	82	1	-14.6841
chr11	109011650	109011701	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	91638783	91639427	protein_coding	Gart	intron	ENSMUSG00000022962	ProperStrand	101	1	-5.0824
chr7	12930796	12930862	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr17	29507333	29507356	protein_coding	Fgd2	intron	ENSMUSG00000024013	ProperStrand	2	1	-18.8964
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr15	76601782	76601849	protein_coding	Arhgap39	intron	ENSMUSG00000033697	ProperStrand	98	1	-9.2948
chr15	80082858	80082920	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr4	53860705	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-5.5305
chr4	71682726	71682826	LINE	L1_Mm	L1	chr4L1_Mm71682712	ProperStrand	1	chr4	75677124	75677214	protein_coding	Ptprd	intron	ENSMUSG00000028399	ProperStrand	36	1	-inf
chr17	39843709	39843780	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	87747938	87747988	protein_coding	Cab39	utr3	ENSMUSG00000036707	ProperStrand	38	1	-3.8175
chr8	88150172	88150199	LINE	L1VL4	L1	chr8L1VL488149037	ProperStrand	1	chr6	38503242	38503350	protein_coding-noncoding	Luc7l2	utr5	ENSMUSG00000029823	ProperStrand	6	1	-inf
chr9	40803626	40804084	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr9	64175421	64176759	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	2	-7.3747
chr6	124745625	124745715	LTR	RMER12B	ERVK	chr6RMER12B124745651	NonProperStrand	1	chr6	124745449	124745549	SINE	B2_Mm1t	B2	chr6B2_Mm1t124745464	ProperStrand	1	1	-inf
chr13	49092878	49092978	LINE	L1MB3	L1	chr13L1MB349092897	NonProperStrand	2	chr13	49093045	49093135	LINE	L1MB3	L1	chr13L1MB349093041	NonProperStrand	2	2	-inf
chr1	135793628	135793718	DNA	MER63D	AcHobo	chr1MER63D135793534	NonProperStrand	2	chr1	135793754	135793854	protein_coding	Optc	utr3	ENSMUSG00000010311	NonProperStrand	2	2	-inf
chr6	126395255	126395273	SINE	PB1	Alu	chr6PB1126395224	ProperStrand	1	chr9	123461833	123461860	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	180197685	180197757	protein_coding	Slco4a1	intron	ENSMUSG00000038963	NonProperStrand	161	chr6	119953409	119953447	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	1	-9.8201
chr4	136747923	136748023	SINE	B2_Mm2	B2	chr4B2_Mm2136747821	ProperStrand	3	chr4	136748068	136748158	SINE	ID_B1	B4	chr4ID_B1136748001	ProperStrand	3	3	-inf
chr15	8659461	8659569	protein_coding-noncoding	Slc1a3	utr3	ENSMUSG00000005360	ProperStrand	3	chr15	8659608	8659645	protein_coding	Slc1a3	intron	ENSMUSG00000005360	ProperStrand	20	2	-inf
chr4	117608442	117608466	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	89	chr4	117601215	117601337	protein_coding	Artn	intron	ENSMUSG00000028539	NonProperStrand	6	1	-16.0122
chr19	23146523	23146647	lincRNA	C330002G04Rik	intron	ENSMUSG00000087169	NonProperStrand	149	chr19	45050306	45050323	protein_coding	Fam178a	intron	ENSMUSG00000036097	NonProperStrand	21	1	-12.3245
chr7	31000710	31000810	SINE	B1_Mus1	Alu	chr7B1_Mus131000734	NonProperStrand	2	chr7	31001073	31001163	SINE	RSINE1	B4	chr7RSINE131001016	NonProperStrand	1	1	-inf
chr16	73764797	73764887	LINE	L1_Mus4	L1	chr16L1_Mus473764785	ProperStrand	1	chr6	122736500	122736600	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-inf
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chrX	84399188	84399216	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	ProperStrand	52	1	-6.8550
chr11	69669635	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-6.9539
chr3	89422220	89422274	protein_coding	Kcnn3	intron	ENSMUSG00000000794	ProperStrand	88	chr1	36155249	36156250	protein_coding	Hs6st1	intron	ENSMUSG00000045216	NonProperStrand	39	1	-12.1219
chr2	129199789	129199817	antisense	Gm14047	.	ENSMUSG00000074805	ProperStrand	18	chr13	44869600	44869684	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.8673
chr9	123461928	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	75328015	75333628	protein_coding	Lrch1	intron	ENSMUSG00000068015	NonProperStrand	34	2	-3.8532
chr6	47583470	47583556	LTR	MTA_Mm	MaLR	chr6MTA_Mm47583161	NonProperStrand	1	chr6	39399414	39399813	SINE	B1_Mur4	Alu	chr6B1_Mur439399388	NonProperStrand	4	1	-inf
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr19	31083452	31083574	protein_coding	Prkg1	intron	ENSMUSG00000052920	NonProperStrand	44	1	-12.8986
chr18	63078741	63078758	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr10	128085165	128085472	lincRNA	Gm17336	exon	ENSMUSG00000091431	ProperStrand	114	1	-12.0678
chr18	37770306	37770345	LTR	MTD	MaLR	chr18MTD37770005	ProperStrand	1	chr6	86898622	86898651	protein_coding	Aak1	intron	ENSMUSG00000057230	ProperStrand	54	1	-inf
chr16	33047587	33047677	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr2	130791130	130791230	protein_coding	Atrn	intron	ENSMUSG00000027312	NonProperStrand	36	1	-14.7529
chr15	67356138	67356238	LINE	L1MB3	L1	chr15L1MB367356133	NonProperStrand	1	chr15	67356015	67356105	LTR	ORR1D1	MaLR	chr15ORR1D167355768	NonProperStrand	1	1	-inf
chr19	13502012	13502113	LTR	RMER17D2	ERVK	chr19RMER17D213501824	ProperStrand	2	chr19	13501673	13501763	Simple_repeat	(TC)n	Simple_repeat	chr19(TC)n13501649	ProperStrand	2	2	-inf
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr5	136920824	136920840	protein_coding	Cux1	intron	ENSMUSG00000029705	ProperStrand	30	1	-11.1210
chr12	111586538	111586587	LTR	ORR1A2-int	MaLR	chr12ORR1A2-int111586470	NonProperStrand	4	chr9	123462108	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr18	35407179	35407231	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	chr11	88514061	88514158	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-4.9263
chr17	39847992	39848037	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	160002702	160002791	LTR	LTR16B1	ERVL	chrXLTR16B1160002599	ProperStrand	1	1	-inf
chrX	21047733	21047785	LINE	L1Md_T	L1	chrXL1Md_T21043609	NonProperStrand	6	chr17	39846462	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.1926
chr13	21193222	21193241	LTR	MMERGLN-int	ERV1	chr13MMERGLN-int21193120	ProperStrand	3	chr11	48800865	48800930	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-15.6375
chr1	100180183	100180222	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr9	70301433	70301462	protein_coding	Rnf111	exon	ENSMUSG00000032217	NonProperStrand	58	1	-10.7322
chr13	55577623	55577723	protein_coding-noncoding	Dbn1	utr3	ENSMUSG00000034675	NonProperStrand	1	chr13	55577511	55577601	protein_coding	Dbn1	exon	ENSMUSG00000034675	NonProperStrand	1	1	-inf
chr17	55962122	55964188	protein_coding	Emr4	intron	ENSMUSG00000032915	ProperStrand	15	chr17	45164402	45164492	protein_coding	Supt3h	intron	ENSMUSG00000038954	NonProperStrand	6	1	-inf
chr17	39847636	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	121147506	121147765	protein_coding	Foxk2	intron	ENSMUSG00000039275	ProperStrand	8	3	-6.7794
chr16	96121884	96121941	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	ProperStrand	119	chr6	125442969	125443033	protein_coding	Cd9	intron	ENSMUSG00000030342	NonProperStrand	10	1	-14.3174
chrX	100089942	100089988	SINE	B1_Mur3	Alu	chrXB1_Mur3100089938	NonProperStrand	1	chrX	100098651	100098753	protein_coding	Dmrtc1a	utr3	ENSMUSG00000031323	NonProperStrand	2	1	-inf
chr13	55702288	55702308	protein_coding	B4galt7	intron	ENSMUSG00000021504	ProperStrand	28	chr19	53031676	53031803	protein_coding	Xpnpep1	intron	ENSMUSG00000025027	ProperStrand	32	1	-14.8354
chr2	167027342	167027442	antisense	Gm14291	.	ENSMUSG00000086098	ProperStrand	8	chr8	22665833	22665923	protein_coding	Gm15308	intron	ENSMUSG00000065957	NonProperStrand	17	6	-20.8076
chr11	87216493	87216519	protein_coding	Rad51c	intron	ENSMUSG00000007646	NonProperStrand	15	chr11	87159875	87159911	protein_coding	Ppm1e	intron	ENSMUSG00000046442	NonProperStrand	32	1	-16.1097
chr17	24721823	24721878	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr12	109666613	109666656	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-4.8313
chr12	40431200	40431294	LTR	RLTR20C	ERVK	chr12RLTR20C40431202	NonProperStrand	1	chr17	39848200	39848251	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr3	132004520	132004620	DNA	RCHARR1	MER1_type	chr3RCHARR1132004380	ProperStrand	1	chr3	132003938	132004028	LINE	L1_Mus3	L1	chr3L1_Mus3132003894	NonProperStrand	1	1	-inf
chr2	144783208	144783298	LINE	L1_Mur2	L1	chr2L1_Mur2144783226	NonProperStrand	1	chr2	144783112	144783212	LINE	L1_Mus4	L1	chr2L1_Mus4144782896	NonProperStrand	1	1	-inf
chr10	61099107	61099168	LTR	RMER6A	ERVK	chr10RMER6A61099077	ProperStrand	1	chr17	39847230	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr16	90229802	90229841	protein_coding	Scaf4	exon	ENSMUSG00000022983	ProperStrand	134	chr19	56559348	56559448	protein_coding	9930023K05Rik	intron	ENSMUSG00000035818	ProperStrand	19	1	-12.7423
chr1	161035398	161035451	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr13	104032008	104032051	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	1	-10.7152
chr17	39847977	39848021	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	52124888	52124944	SINE	ID_B1	B4	chr11ID_B152124904	ProperStrand	1	1	-inf
chr9	123018304	123018328	protein_coding	Zdhhc3	intron	ENSMUSG00000025786	NonProperStrand	28	chr1	34815123	34815199	protein_coding	Arhgef4	intron	ENSMUSG00000037509	NonProperStrand	73	1	-13.1722
chr7	141451076	141451305	LINE	Lx2	L1	chr7Lx2141451081	ProperStrand	221	chr9	72697903	72697993	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-6.0661
chr7	4144287	4144750	LINE	L1Md_T	L1	chr7L1Md_T4137819	NonProperStrand	40	chr7	4144750	4144931	LTR	IAPLTR1_Mm	ERVK	chr7IAPLTR1_Mm4144725	NonProperStrand	2	2	-inf
chr2	139999940	140000004	protein_coding	2310003L22Rik	intron	ENSMUSG00000027384	NonProperStrand	20	chr18	80854244	80854318	protein_coding	Nfatc1	intron	ENSMUSG00000033016	ProperStrand	40	1	-15.0740
chr9	123462128	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	122279608	122279631	protein_coding	Ubac2	intron	ENSMUSG00000041765	NonProperStrand	2	2	-inf
chr2	36420003	36420093	LINE	L1_Mur2	L1	chr2L1_Mur236419979	NonProperStrand	1	chr2	36420193	36420293	LINE	L1_Mur2	L1	chr2L1_Mur236420179	NonProperStrand	1	1	-inf
chr17	28980373	28980404	LTR	RMER19B	ERVK	chr17RMER19B28979894	ProperStrand	1	chr17	28979839	28979908	SINE	B1_Mus2	Alu	chr17B1_Mus228979748	NonProperStrand	1	1	-inf
chr17	50420126	50420156	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr5	27768183	27768300	protein_coding	Dpp6	intron	ENSMUSG00000061576	NonProperStrand	86	1	-9.2226
chr13	9834304	9834433	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr11	3749565	3749583	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	1	-8.8865
chr6	145932746	145932803	LINE	Lx5	L1	chr6Lx5145932487	NonProperStrand	2	chr17	39845945	39845992	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-9.0607
chr1	163265612	163265631	SINE	B2_Mm2	B2	chr1B2_Mm2163265441	NonProperStrand	1	chr11	103068381	103068474	protein_coding	1700023F06Rik	intron	ENSMUSG00000020940	NonProperStrand	20	1	-inf
chr3	26321224	26321240	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr2	71894445	71894536	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-12.3695
chr7	26905572	26905672	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int26905424	ProperStrand	2	chr9	10197683	10197773	protein_coding	Cntn5	intron	ENSMUSG00000039488	ProperStrand	39	2	-inf
chr7	99944469	99944524	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	chr6	93770746	93770793	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-3.8795
chr5	138280557	138280575	LINE	L1Md_F2	L1	chr5L1Md_F2138279089	ProperStrand	14	chr2	10345851	10345993	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	NonProperStrand	43	1	-15.6614
chr3	108015024	108016393	protein_coding	Sypl2	utr3	ENSMUSG00000027887	ProperStrand	4	chr3	108012578	108012617	protein_coding	Atxn7l2	intron	ENSMUSG00000048997	ProperStrand	4	1	-inf
chr9	110226004	110226126	SINE	B1F	Alu	chr9B1F110225983	NonProperStrand	1	chr9	110227282	110227309	SINE	B3A	B2	chr9B3A110227120	NonProperStrand	2	1	-inf
chr17	67908889	67908946	LTR	MTC-int	MaLR	chr17MTC-int67908543	ProperStrand	3	chr17	67909041	67909088	LTR	MTC	MaLR	chr17MTC67909032	ProperStrand	3	3	-inf
chr9	92541918	92541936	DNA	MER33	MER1_type	chr9MER3392541775	ProperStrand	1	chr4	110293420	110293523	protein_coding	Agbl4	intron	ENSMUSG00000061298	NonProperStrand	47	1	-inf
chr17	39848134	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	57107296	57107400	protein_coding	Acer1	intron	ENSMUSG00000045019	NonProperStrand	5	3	-15.2889
chr7	96242702	96242817	LTR	RLTR10C	ERVK	chr7RLTR10C96242441	ProperStrand	3	chr9	123462153	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chrX	53370972	53371062	LINE	L1Md_F2	L1	chrXL1Md_F253370670	ProperStrand	1	chrX	53370352	53370452	LINE	L1Md_T	L1	chrXL1Md_T53368776	NonProperStrand	1	1	-inf
chr4	91353536	91353636	LINE	Lx	L1	chr4Lx91351876	NonProperStrand	9	chr8	83715783	83715800	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int83714337	ProperStrand	6	1	-inf
chr17	17196803	17196846	LTR	RLTR25A	ERVK	chr17RLTR25A17195895	NonProperStrand	1	chr2	150801565	150801598	protein_coding	Ninl	exon	ENSMUSG00000068115	NonProperStrand	24	1	-inf
chr6	88488056	88488135	LINE	L1_Mur3	L1	chr6L1_Mur388487758	NonProperStrand	4	chr17	39847348	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr17	39846816	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	25570178	25570286	SINE	B2_Mm2	B2	chr19B2_Mm225570173	NonProperStrand	1	1	-inf
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr3	9538125	9538186	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-6.8958
chr17	39846650	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	65356808	65356870	protein_coding	Ankdd1a	intron	ENSMUSG00000066510	NonProperStrand	5	1	-3.1907
chr3	41564464	41564502	LINE	L1Md_F2	L1	chr3L1Md_F241563763	NonProperStrand	33	chr17	47753561	47753684	protein_coding	Med20	intron	ENSMUSG00000092558	ProperStrand	41	1	-14.0050
chr4	15690660	15690760	LINE	L1_Mus1	L1	chr4L1_Mus115690518	ProperStrand	1	chr4	15690819	15690909	LTR	RMER17A	ERVK	chr4RMER17A15690741	NonProperStrand	1	1	-inf
chr17	39846362	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	97912585	97921680	protein_coding	Notch2	intron	ENSMUSG00000027878	ProperStrand	21	4	-4.3938
chr7	27309017	27309325	SINE	PB1D9	Alu	chr7PB1D927309006	NonProperStrand	2	chr7	27330234	27333370	protein_coding	Nlrp9a	intron	ENSMUSG00000054102	NonProperStrand	76	1	-19.1893
chr11	57523016	57523110	protein_coding	Galnt10	intron	ENSMUSG00000020520	ProperStrand	49	chr9	40804810	40804836	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-7.8441
chr17	39845171	39845217	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	29398687	29398723	protein_coding	C330005M16Rik	intron	ENSMUSG00000037469	ProperStrand	34	1	-3.2376
chr3	86013989	86014024	LTR	RLTR20C	ERVK	chr3RLTR20C86013925	ProperStrand	1	chr3	86014116	86014163	SINE	B1_Mus2	Alu	chr3B1_Mus286014058	NonProperStrand	1	1	-inf
chr17	39846591	39846638	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	102592666	102592723	pseudogene	Gm11637	.	ENSMUSG00000084375	NonProperStrand	1	1	-inf
chr11	83958686	83958767	protein_coding	Acaca	intron	ENSMUSG00000020532	ProperStrand	53	chr1	15818508	15818560	protein_coding	Terf1	intron	ENSMUSG00000025925	ProperStrand	66	1	-12.0802
chr5	124451319	124457094	protein_coding	Hip1r	intron	ENSMUSG00000000915	ProperStrand	28	chr5	124457089	124459845	protein_coding	Vps37b	intron	ENSMUSG00000066278	NonProperStrand	26	3	-inf
chr4	128960985	128961075	LINE	L2a	L2	chr4L2a128961007	ProperStrand	5	chr4	128960864	128960964	SINE	RSINE1	B4	chr4RSINE1128960856	ProperStrand	7	5	-inf
chr6	82751906	82751980	SINE	B3	B2	chr6B382751894	ProperStrand	3	chr2	5379273	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr14	19278154	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr11	96795778	96795870	protein_coding	Prr15l	utr5	ENSMUSG00000047040	ProperStrand	27	1	-13.1638
chr16	98063109	98063144	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	chr2	31211284	31211383	protein_coding	Hmcn2	intron	ENSMUSG00000055632	ProperStrand	328	2	-18.0931
chr17	39847167	39847189	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	21940359	21940391	SINE	B1F2	Alu	chr13B1F221940316	ProperStrand	2	1	-6.5615
chr8	85860377	85861175	LINE	L1_Mus2	L1	chr8L1_Mus285859601	ProperStrand	3	chr8	85853034	85856376	protein_coding	Elmod2	intron	ENSMUSG00000035151	NonProperStrand	47	3	-inf
chr11	90521256	90521366	protein_coding	Tom1l1	intron	ENSMUSG00000020541	ProperStrand	15	chr15	73106917	73106934	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	1	-10.2368
chr11	65134598	65134672	lincRNA	Gm12295	intron	ENSMUSG00000085162	ProperStrand	128	chr11	59824343	59824407	protein_coding	Pemt	intron	ENSMUSG00000000301	ProperStrand	36	1	-11.5322
chr15	83386738	83386781	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n83386731	NonProperStrand	1	chr13	42150860	42150893	protein_coding	Hivep1	utr5	ENSMUSG00000021366	ProperStrand	54	1	-inf
chr11	49801250	49801320	SINE	RSINE1	B4	chr11RSINE149801188	NonProperStrand	1	chr11	49801493	49801573	SINE	RSINE1	B4	chr11RSINE149801516	NonProperStrand	2	1	-inf
chr9	57074897	57074991	LTR	RLTR42-int	ERVK	chr9RLTR42-int57074922	NonProperStrand	1	chr12	38861382	38865558	protein_coding	Dgkb	intron	ENSMUSG00000036095	NonProperStrand	29	1	-inf
chr4	11607443	11607543	LINE	L1M3f	L1	chr4L1M3f11607456	NonProperStrand	1	chr4	11607333	11607423	SINE	RSINE1	B4	chr4RSINE111607338	NonProperStrand	1	1	-inf
chr12	23010052	23010089	lincRNA	2410018L13Rik	intron	ENSMUSG00000073164	NonProperStrand	9	chr2	32963330	32963383	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-12.7870
chr13	40900031	40900109	LTR	ORR1C1-int	MaLR	chr13ORR1C1-int40899998	ProperStrand	4	chr13	40899844	40899903	LTR	ORR1C1	MaLR	chr13ORR1C140899629	ProperStrand	1	1	-inf
chr13	60671832	60671905	LTR	ORR1B1	MaLR	chr13ORR1B160671819	NonProperStrand	2	chr7	19558552	19558599	SINE	ID4	ID	chr7ID419558518	NonProperStrand	2	1	-19.8939
chr3	66580439	66580529	LINE	L1_Mus1	L1	chr3L1_Mus166580276	ProperStrand	1	chr3	66580133	66580233	LINE	L2	L2	chr3L266580051	NonProperStrand	1	1	-inf
chr4	133797384	133797477	LTR	MT2B	ERVL	chr4MT2B133797405	NonProperStrand	1	chr9	123462079	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	76822205	76822222	protein_coding	Sgpp1	intron	ENSMUSG00000021054	NonProperStrand	17	chr2	36094031	36094047	protein_coding	Ptgs1	intron	ENSMUSG00000047250	ProperStrand	13	1	-17.7754
chr10	78059648	78059686	LTR	RMER19B	ERVK	chr10RMER19B78058889	ProperStrand	3	chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-7.3534
chr17	25999307	25999397	lincRNA	Gm17480	intron	ENSMUSG00000091321	NonProperStrand	21	chr17	25998306	25998406	protein_coding	Wdr90	utr5	ENSMUSG00000073434	ProperStrand	7	1	-18.3737
chr1	47289232	47289250	LINE	L1_Mm	L1	chr1L1_Mm47289079	NonProperStrand	1	chr17	39848098	39848126	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr1	36351673	36351729	LTR	MTC	MaLR	chr1MTC36351484	NonProperStrand	2	chr12	84196175	84196246	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	1	-16.8922
chrX	105842186	105842252	SINE	RSINE1	B4	chrXRSINE1105842154	NonProperStrand	1	chr13	97190560	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr6	17643509	17643585	protein_coding-noncoding	St7	utr5	ENSMUSG00000029534	ProperStrand	1	chr6	17644098	17644180	protein_coding	St7	utr5	ENSMUSG00000029534	ProperStrand	40	1	-inf
chr17	39847803	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	103324352	103324380	SINE	B1_Mur1	Alu	chr9B1_Mur1103324244	ProperStrand	1	1	-inf
chr4	97110428	97110518	LINE	L1_Mur2	L1	chr4L1_Mur297110047	ProperStrand	1	chr4	97110717	97110817	LTR	RMER19C	ERVK	chr4RMER19C97110668	ProperStrand	1	1	-inf
chr17	39846145	39846174	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr14	65344027	65344046	protein_coding	Kif13b	intron	ENSMUSG00000060012	NonProperStrand	6	1	-6.3814
chr12	54696812	54696876	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr7	123415681	123415755	protein_coding	Plekha7	intron	ENSMUSG00000045659	NonProperStrand	48	1	-10.8290
chr17	39847658	39847709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	87680174	87680215	LTR	MER31-int	ERV1	chr1MER31-int87679789	NonProperStrand	1	1	-inf
chr15	86437957	86438057	Simple_repeat	(TATATG)n	Simple_repeat	chr15(TATATG)n86437967	ProperStrand	3	chr15	86437864	86437954	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n86437837	ProperStrand	3	3	-inf
chr17	39846351	39846440	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	135608812	135608876	protein_coding-noncoding	Rpl11	utr3	ENSMUSG00000059291	ProperStrand	1	1	-inf
chr15	83230501	83230645	protein_coding	Pacsin2	intron	ENSMUSG00000016664	ProperStrand	107	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-11.3524
chr8	87528267	87528357	SINE	B1_Mus2	Alu	chr8B1_Mus287528259	NonProperStrand	3	chr8	87528385	87528485	SINE	B2_Mm1t	B2	chr8B2_Mm1t87528368	ProperStrand	3	3	-inf
chr18	85080360	85080460	SINE	ID_B1	B4	chr18ID_B185080389	ProperStrand	1	chr15	39703419	39703509	protein_coding	Lrp12	utr3	ENSMUSG00000022305	ProperStrand	2	1	-inf
chr7	68074037	68074095	LINE	Lx6	L1	chr7Lx668073966	NonProperStrand	7	chr2	166114873	166114921	lincRNA	Gm11468	intron	ENSMUSG00000084840	NonProperStrand	60	1	-16.4805
chr17	39847160	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	20499373	20499397	protein_coding	Dsg1a	exon	ENSMUSG00000069441	ProperStrand	1	1	-inf
chr1	64793915	64793932	LTR	MTA_Mm	MaLR	chr1MTA_Mm64793699	ProperStrand	1	chr10	127037327	127037458	protein_coding	Lrp1	utr3	ENSMUSG00000040249	ProperStrand	36	1	-inf
chr3	28785243	28785343	LTR	MERVL-int	ERVL	chr3MERVL-int28783099	ProperStrand	2	chr13	112578191	112578281	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-11.5666
chr11	58058172	58058272	LINE	Lx8	L1	chr11Lx858058194	ProperStrand	3	chr11	58058071	58058161	SINE	B2_Mm1t	B2	chr11B2_Mm1t58057996	ProperStrand	3	3	-inf
chr17	39845835	39846194	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr4	43492779	43492866	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	15	-5.2603
chr17	7744662	7744762	LINE	L1Md_F	L1	chr17L1Md_F7744670	NonProperStrand	2	chr17	7744896	7744986	LINE	L1Md_F	L1	chr17L1Md_F7744812	NonProperStrand	1	1	-inf
chr2	102829378	102829438	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr16	89981924	89982025	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	1	-4.2406
chr7	24303391	24303491	LINE	L1VL4	L1	chr7L1VL424302959	NonProperStrand	1	chr17	39847182	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr14	62527434	62527524	LINE	L1VL2	L1	chr14L1VL262527447	NonProperStrand	1	chr14	62527034	62527134	LTR	MYSERV16_I-int	ERVK	chr14MYSERV16_I-int62526781	ProperStrand	1	1	-inf
chr17	39848668	39848742	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr13	90923162	90923592	SINE	RSINE1	B4	chr13RSINE190923104	NonProperStrand	1	1	-inf
chr8	4247346	4247432	protein_coding	Map2k7	utr3	ENSMUSG00000002948	ProperStrand	15	chr1	66303122	66303178	protein_coding	Mtap2	intron	ENSMUSG00000015222	ProperStrand	24	1	-16.7130
chr6	29881526	29881626	protein_coding-noncoding	Fam40b	utr5	ENSMUSG00000039629	NonProperStrand	1	chr6	29881768	29881858	protein_coding	Fam40b	intron	ENSMUSG00000039629	NonProperStrand	1	1	-inf
chr1	89671421	89682954	protein_coding-noncoding	Atg16l1	utr5	ENSMUSG00000026289	ProperStrand	32	chr1	89671310	89680027	protein_coding	Atg16l1	intron	ENSMUSG00000026289	ProperStrand	119	6	-21.4314
chr5	144755252	144755321	protein_coding	Ccz1	intron	ENSMUSG00000029617	ProperStrand	3	chr13	113727350	113727429	protein_coding	Dhx29	intron	ENSMUSG00000042426	NonProperStrand	4	3	-inf
chr9	113943510	113943591	protein_coding	Fbxl2	intron	ENSMUSG00000032507	NonProperStrand	56	chr5	110834281	110834301	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	ProperStrand	131	1	-10.5934
chr2	167167531	167167601	protein_coding	B4galt5	intron	ENSMUSG00000017929	ProperStrand	25	chr17	30432173	30432210	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-9.0004
chr6	68551980	68552032	LINE	Lx5	L1	chr6Lx568551205	NonProperStrand	4	chr11	5409526	5409582	SINE	B4A	B4	chr11B4A5409305	NonProperStrand	1	1	-inf
chr2	131029258	131029348	LTR	MTE2a	MaLR	chr2MTE2a131029204	NonProperStrand	2	chr2	131029413	131029513	SINE	B4A	B4	chr2B4A131029425	ProperStrand	2	2	-inf
chr9	123461959	123462148	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	123913496	123914097	protein_coding	Mlxip	intron	ENSMUSG00000038342	ProperStrand	25	2	-4.6937
chr8	106669440	106669505	LINE	Lx5	L1	chr8Lx5106669400	NonProperStrand	5	chr17	39845974	39846051	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-6.7797
chr9	103321756	103321821	SINE	B1_Mm	Alu	chr9B1_Mm103321723	NonProperStrand	1	chr5	34344440	34344515	protein_coding	Nat8l	utr3	ENSMUSG00000048142	ProperStrand	31	1	-inf
chr5	30060658	30060748	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr6	25714630	25714730	protein_coding	Pot1a	intron	ENSMUSG00000029676	NonProperStrand	3	1	-20.6138
chr9	78367273	78367819	SINE	B1_Mm	Alu	chr9B1_Mm78367670	NonProperStrand	55	chr9	78367175	78367726	SINE	B2_Mm1t	B2	chr9B2_Mm1t78367196	NonProperStrand	39	18	-inf
chr19	45614228	45614328	DNA	URR1A	MER1_type	chr19URR1A45614142	NonProperStrand	1	chr19	45602801	45602891	protein_coding	Btrc	intron	ENSMUSG00000025217	NonProperStrand	40	1	-inf
chr7	36702192	36702282	LINE	Lx8	L1	chr7Lx836701985	ProperStrand	4	chr8	117296800	117296898	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-11.7678
chr8	13416897	13416914	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	13	chr2	158359793	158359931	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-13.6840
chr17	39848007	39848079	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	77848015	77849408	protein_coding	Dhrs13	intron	ENSMUSG00000020834	ProperStrand	5	3	-9.2539
chrX	74223893	74223969	LINE	L1Md_F2	L1	chrXL1Md_F274223617	NonProperStrand	7	chr9	123461921	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr4	62470754	62470771	LINE	L1MA8	L1	chr4L1MA862470628	ProperStrand	4	chr19	47428074	47428206	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	ProperStrand	170	1	-15.6273
chr4	70379079	70379100	LTR	BGLII	ERVK	chr4BGLII70378834	ProperStrand	3	chr4	70379374	70379511	LTR	MYSERV16_I-int	ERVK	chr4MYSERV16_I-int70379253	ProperStrand	1	1	-inf
chr14	18283182	18283272	LINE	L1Md_F2	L1	chr14L1Md_F218278301	ProperStrand	2	chr5	117059056	117059156	LINE	L1Md_A	L1	chr5L1Md_A117055243	ProperStrand	1	1	-inf
chr17	39846461	39846503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	129126317	129126349	protein_coding	Il1a	utr3	ENSMUSG00000027399	ProperStrand	3	1	-4.3017
chr11	19959539	19959657	LTR	ORR1C2-int	MaLR	chr11ORR1C2-int19959108	ProperStrand	1	chr11	120009446	120009462	protein_coding	Slc38a10	intron	ENSMUSG00000061306	ProperStrand	3	1	-inf
chr7	15938761	15938870	LTR	LTRIS_Mus	ERV1	chr7LTRIS_Mus15938504	ProperStrand	14	chr9	123461956	123461979	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr9	105488843	105488871	LINE	L1Md_F2	L1	chr9L1Md_F2105488572	ProperStrand	2	chr9	123461884	123461963	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr3	142344166	142344204	LTR	MMETn-int	ERVK	chr3MMETn-int142343280	ProperStrand	2	chr1	11211754	11211844	protein_coding	Prex2	intron	ENSMUSG00000048960	ProperStrand	26	1	-20.6107
chr3	157051492	157051592	LTR	RMER17C	ERVK	chr3RMER17C157051408	NonProperStrand	1	chr3	157051616	157051706	Simple_repeat	(TCTA)n	Simple_repeat	chr3(TCTA)n157051607	NonProperStrand	1	1	-inf
chr15	66281239	66281283	protein_coding	Lrrc6	intron	ENSMUSG00000022375	ProperStrand	66	chr2	5379271	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.3662
chr13	66669844	66669944	LINE	L1Md_F2	L1	chr13L1Md_F266667229	ProperStrand	1	chr13	65907706	65907796	lincRNA	Gm7822	intron	ENSMUSG00000091975	ProperStrand	8	1	-inf
chr6	81946516	81946591	LINE	L1Md_T	L1	chr6L1Md_T81945661	ProperStrand	2	chr6	3200926	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr4	141809225	141809291	Simple_repeat	(TCTG)n	Simple_repeat	chr4(TCTG)n141809235	ProperStrand	1	chr5	115560898	115560974	protein_coding	Acads	exon	ENSMUSG00000029545	NonProperStrand	165	1	-inf
chr7	46851899	46851952	LINE	L1_Mur3	L1	chr7L1_Mur346851370	ProperStrand	16	chr7	46850302	46850890	LINE	L1_Mus1	L1	chr7L1_Mus146850082	ProperStrand	37	1	-15.7140
chr14	20683091	20683191	LTR	ORR1B1-int	MaLR	chr14ORR1B1-int20683015	NonProperStrand	6	chr14	20682749	20682839	LTR	ORR1B1	MaLR	chr14ORR1B120682629	NonProperStrand	5	5	-inf
chr8	116918844	116918939	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int116915438	ProperStrand	2	chr12	78350868	78350926	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-13.3256
chr2	5430384	5430497	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr7	26535080	26535096	protein_coding	Hnrnpul1	intron	ENSMUSG00000040725	NonProperStrand	6	1	-9.2270
chr7	140953582	140953659	protein_coding	Dhx32	intron	ENSMUSG00000030986	ProperStrand	21	chr17	85620883	85620909	protein_coding	1700106N22Rik	intron	ENSMUSG00000071037	ProperStrand	9	1	-18.0792
chr12	101921886	101921939	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	chr13	92262539	92262610	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	103	1	-9.9309
chr17	35838002	35838028	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr4	149120030	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-3.9562
chr17	39846324	39847029	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	123507934	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	7	-4.1414
chr13	44748941	44749013	Simple_repeat	(TAGA)n	Simple_repeat	chr13(TAGA)n44748786	ProperStrand	1	chr12	80641170	80641252	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-inf
chr17	39847864	39847902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	88642851	88642917	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n88642860	NonProperStrand	2	1	-5.4040
chr12	102466101	102466201	LINE	L1_Mus3	L1	chr12L1_Mus3102465591	ProperStrand	2	chr12	102466224	102466314	LTR	MTA_Mm	MaLR	chr12MTA_Mm102466243	NonProperStrand	1	1	-inf
chr13	62078555	62078654	LTR	RMER12	ERVK	chr13RMER1262078317	NonProperStrand	1	chr9	123461821	123461875	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	149653438	149653845	SINE	B2_Mm1a	B2	chr4B2_Mm1a149653371	ProperStrand	3	chr15	76462174	76462243	protein_coding	Tonsl	intron	ENSMUSG00000059323	ProperStrand	40	3	-inf
chr4	116627447	116627481	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	chr1	172173251	172173333	protein_coding	Sh2d1b2	intron	ENSMUSG00000073494	ProperStrand	22	1	-12.2710
chr16	17085345	17085432	protein_coding	Ypel1	utr3	ENSMUSG00000022773	ProperStrand	15	chr19	6998891	6998927	protein_coding	1700019N12Rik	intron	ENSMUSG00000050623	NonProperStrand	1	1	-inf
chr7	135103144	135103206	LTR	RLTR31_Mm	ERVK	chr7RLTR31_Mm135103004	NonProperStrand	2	chr10	82831284	82831348	protein_coding	D10Wsu102e	utr3	ENSMUSG00000020255	ProperStrand	5	2	-inf
chr15	51787951	51788011	LTR	MTC	MaLR	chr15MTC51787786	ProperStrand	4	chr13	97190561	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr15	98084984	98085046	LTR	RMER6A	ERVK	chr15RMER6A98084904	NonProperStrand	3	chr17	39847264	39847340	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr15	56841215	56841234	LINE	L1_Mur1	L1	chr15L1_Mur156840314	NonProperStrand	1	chr17	39846585	39846709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	123462046	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	153486699	153486717	protein_coding	Fam129a	intron	ENSMUSG00000026483	ProperStrand	13	1	-3.8693
chr1	34279698	34279748	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr4	117601685	117601780	protein_coding	Artn	utr5	ENSMUSG00000028539	NonProperStrand	6	1	-11.5288
chr8	64727856	64727904	LINE	L1Md_T	L1	chr8L1Md_T64723026	ProperStrand	17	chr5	28077729	28077759	protein_coding	Paxip1	intron	ENSMUSG00000002221	NonProperStrand	65	1	-14.4280
chr10	12275948	12276048	protein_coding	Utrn	intron	ENSMUSG00000019820	NonProperStrand	15	chr10	122565788	122565878	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-15.3365
chr3	64050938	64051030	LTR	RNERVK23-int	ERVK	chr3RNERVK23-int64050194	ProperStrand	8	chr9	110281285	110281332	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-11.6905
chr10	34176484	34176584	LINE	L1MA5	L1	chr10L1MA534176381	ProperStrand	1	chr17	39846750	39846840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	27612013	27612113	Low_complexity	GA-rich	Low_complexity	chr15GA-rich27611962	NonProperStrand	10	chr15	27612139	27612229	Simple_repeat	(GAA)n	Simple_repeat	chr15(GAA)n27612120	NonProperStrand	10	10	-inf
chr4	117554928	117555028	protein_coding	B4galt2	intron	ENSMUSG00000028541	ProperStrand	1	chr10	45073199	45073289	protein_coding	Bves	intron	ENSMUSG00000071317	NonProperStrand	1	1	-inf
chr11	30814189	30814289	LINE	L1_Mm	L1	chr11L1_Mm30814195	NonProperStrand	4	chr11	30814049	30814139	LINE	L1_Mur2	L1	chr11L1_Mur230813966	NonProperStrand	4	4	-inf
chr17	39848008	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	117286145	117286201	SINE	B3	B2	chr2B3117286098	ProperStrand	1	1	-inf
chr2	102829379	102829439	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr16	93854583	93854665	protein_coding	Morc3	intron	ENSMUSG00000039456	ProperStrand	53	1	-10.1247
chr11	96702635	96702669	SINE	B1_Mus1	Alu	chr11B1_Mus196702610	NonProperStrand	1	chr9	123462076	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr15	85177747	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-9.1122
chr10	95412920	95413033	protein_coding	Eea1	intron	ENSMUSG00000036499	NonProperStrand	56	chr10	89819560	89819576	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	65	1	-12.0006
chr7	29514991	29515023	protein_coding	Fbxo17	intron	ENSMUSG00000030598	NonProperStrand	54	chr16	34162258	34162382	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-9.3507
chr17	39843023	39843043	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr16	13588141	13588203	protein_coding	Parn	intron	ENSMUSG00000022685	ProperStrand	65	1	-5.2302
chr6	92078769	92078842	protein_coding	Nr2c2	intron	ENSMUSG00000005893	ProperStrand	51	chr9	40801920	40801973	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-7.7640
chr12	78350931	78351067	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr9	107608969	107608987	protein_coding	Sema3f	intron	ENSMUSG00000034684	NonProperStrand	15	1	-8.6827
chr17	22878073	22878127	LTR	RLTR11A2	ERVK	chr17RLTR11A222878022	NonProperStrand	2	chr9	123461835	123461937	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr15	57740777	57740821	SINE	B2_Mm1a	B2	chr15B2_Mm1a57740708	ProperStrand	1	chr15	57739291	57739349	SINE	B4	B4	chr15B457739120	NonProperStrand	1	1	-inf
chr17	39847172	39847240	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	87830641	87830719	protein_coding	Orc6	intron	ENSMUSG00000031697	NonProperStrand	5	1	-4.3348
chr11	12463098	12463178	LTR	IAPEz-int	ERVK	chr11IAPEz-int12462249	NonProperStrand	29	chr7	113210859	113210926	processed_transcript	RP23-466I14.1	.	ENSMUSG00000093378	ProperStrand	23	1	-15.4375
chr3	30880055	30880145	SINE	B1_Mus1	Alu	chr3B1_Mus130879981	NonProperStrand	1	chr3	30880270	30880370	SINE	B4	B4	chr3B430880211	ProperStrand	1	1	-inf
chr1	91931963	91932051	LINE	L1M5	L1	chr1L1M591931812	NonProperStrand	1	chr1	91932909	91932957	LTR	BGLII_B	ERVK	chr1BGLII_B91932785	ProperStrand	1	1	-inf
chr7	16512449	16512465	LINE	L1_Mus1	L1	chr7L1_Mus116512326	ProperStrand	1	chr17	39847442	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	101395882	101395951	protein_coding	Atp1a1	intron	ENSMUSG00000033161	NonProperStrand	130	chr11	69917442	69917607	protein_coding	Asgr2	intron	ENSMUSG00000040963	NonProperStrand	118	1	-9.1138
chr17	39847257	39847304	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	53245018	53245050	LTR	ETnERV2-int	ERVK	chrXETnERV2-int53242982	ProperStrand	5	1	-4.3348
chr17	39847735	39847778	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	116394798	116394831	protein_coding	Sphk1	utr5	ENSMUSG00000061878	NonProperStrand	1	1	-inf
chr11	85668088	85668178	LINE	L1M4	L1	chr11L1M485668059	ProperStrand	1	chr11	85668178	85668278	LTR	MT2A	ERVL	chr11MT2A85668206	NonProperStrand	1	1	-inf
chr9	123757189	123757206	protein_coding	Fyco1	intron	ENSMUSG00000025241	NonProperStrand	4	chr14	11726831	11726927	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-13.5445
chr17	39846785	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr3	8990937	8991029	protein_coding	Tpd52	intron	ENSMUSG00000027506	NonProperStrand	2	1	-19.9529
chr17	39846344	39846372	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr1	106724131	106724234	protein_coding	Cdh20	intron	ENSMUSG00000050840	ProperStrand	3	1	-19.5300
chr17	39846749	39846781	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	99490229	99490251	SINE	B1_Mus1	Alu	chr13B1_Mus199490234	NonProperStrand	2	2	-inf
chr17	39846816	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101568597	101569356	SINE	B4A	B4	chr11B4A101569150	NonProperStrand	1	1	-inf
chr11	9136071	9136149	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	chr4	95635159	95635195	protein_coding	Hook1	intron	ENSMUSG00000028572	ProperStrand	23	1	-13.5733
chr17	39846593	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	88482360	88482404	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int88482320	ProperStrand	1	1	-inf
chr3	62500892	62500965	LTR	IAPEz-int	ERVK	chr3IAPEz-int62500000	NonProperStrand	3	chr9	123461959	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr14	63140235	63140335	LINE	Lx7	L1	chr14Lx763140093	NonProperStrand	3	chr2	45572645	45572735	LINE	Lx9	L1	chr2Lx945572609	NonProperStrand	1	1	-inf
chr1	171503045	171503138	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.0406
chr16	17530067	17530153	protein_coding	Thap7	intron	ENSMUSG00000022760	ProperStrand	8	chr9	120950908	120950961	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-13.2691
chr17	84776714	84776829	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	chr16	30308259	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-10.0732
chr14	100170672	100170788	LTR	MLT1D	MaLR	chr14MLT1D100170694	NonProperStrand	1	chr9	123461994	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	54696899	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr14	61776017	61776122	protein_coding	Sacs	intron	ENSMUSG00000048279	ProperStrand	4	1	-16.0658
chr17	39846759	39846796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	122448575	122448622	LTR	MER21B	ERV1	chr6MER21B122448457	ProperStrand	2	1	-5.3533
chr9	72293100	72293179	protein_coding	Mns1	intron	ENSMUSG00000032221	ProperStrand	8	chr13	113850853	113850922	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	2	-inf
chr18	64998411	64998511	DNA	MER20	MER1_type	chr18MER2064998395	ProperStrand	2	chr18	64998243	64998333	SINE	MIR	MIR	chr18MIR64998256	NonProperStrand	2	2	-inf
chr17	39848506	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	125406042	125406090	SINE	B4	B4	chr5B4125405830	ProperStrand	4	1	-6.9461
chr15	84694112	84694143	LTR	MTC	MaLR	chr15MTC84693970	NonProperStrand	1	chr15	84694767	84694788	LTR	MTD	MaLR	chr15MTD84694701	NonProperStrand	1	1	-inf
chr5	131796003	131796101	SINE	B4A	B4	chr5B4A131795949	NonProperStrand	1	chr8	124705063	124705119	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-inf
chr18	67540361	67540461	LINE	L1MA4	L1	chr18L1MA467540366	NonProperStrand	1	chr18	67540515	67540606	SINE	B2_Mm2	B2	chr18B2_Mm267540509	NonProperStrand	1	1	-inf
chr8	129217763	129217788	LTR	MTEb	MaLR	chr8MTEb129217678	NonProperStrand	1	chr2	13218764	13218835	protein_coding	Cubn	intron	ENSMUSG00000026726	ProperStrand	65	1	-inf
chr7	132951057	132951091	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	ProperStrand	47	chr1	136707740	136707764	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-10.7992
chr8	87695156	87695223	LTR	RLTR18-int	ERVK	chr8RLTR18-int87694472	NonProperStrand	1	chr8	87695498	87695538	protein_coding	Gm6531	exon	ENSMUSG00000062687	NonProperStrand	2	1	-inf
chr10	28490002	28490066	protein_coding	Themis	intron	ENSMUSG00000049109	ProperStrand	49	chr16	11426825	11426879	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-9.4537
chr2	52088674	52120384	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	chr13	97190552	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-6.0362
chr5	146261004	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	31609729	31609792	protein_coding	Abl1	intron	ENSMUSG00000026842	ProperStrand	150	1	-3.3358
chr11	20206546	20206564	protein_coding	Slc1a4	exon	ENSMUSG00000020142	NonProperStrand	34	chr1	16102705	16102828	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	1	-12.6692
chr5	53564610	53564710	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	chr5	65601640	65601730	protein_coding	Wdr19	intron	ENSMUSG00000037890	ProperStrand	17	1	-12.8268
chr17	22099639	22099729	protein_coding	Zfp943	utr5	ENSMUSG00000053347	NonProperStrand	10	chr17	22099291	22099391	protein_coding	Zfp942	utr5	ENSMUSG00000071267	ProperStrand	1	1	-inf
chr3	116885150	116885268	LINE	L1MC3	L1	chr3L1MC3116884996	NonProperStrand	1	chr3	116881802	116881829	LTR	MLT-int	MaLR	chr3MLT-int116881667	ProperStrand	1	1	-inf
chr12	78350926	78351008	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-5.1264
chr9	49797465	49797504	DNA	MER2	MER2_type	chr9MER249797408	ProperStrand	2	chr9	49797113	49797162	LTR	ORR1E	MaLR	chr9ORR1E49796838	ProperStrand	6	2	-inf
chr11	69585168	69585266	protein_coding	Zbtb4	intron	ENSMUSG00000018750	ProperStrand	30	chr10	79859932	79860147	protein_coding	Mbd3	intron	ENSMUSG00000035478	NonProperStrand	98	1	-12.4381
chr6	97502155	97502248	protein_coding	Frmd4b	intron	ENSMUSG00000030064	ProperStrand	32	chr13	97190561	97190592	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.3591
chr12	55853128	55853224	protein_coding	Snx6	intron	ENSMUSG00000005656	NonProperStrand	7	chrX	93468587	93468607	protein_coding	Vsig4	intron	ENSMUSG00000044206	ProperStrand	22	1	-18.8786
chr6	3200813	3201218	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	115811453	115811473	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	2	-5.9690
chr4	84309678	84309730	protein_coding	Bnc2	intron	ENSMUSG00000028487	ProperStrand	55	chr4	119282802	119285135	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	1	-10.7890
chr8	102679934	102679990	LINE	L1Md_F2	L1	chr8L1Md_F2102677967	ProperStrand	2	chr5	146261136	146261189	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-12.4657
chr17	39847963	39848012	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	102521312	102521412	SINE	B3	B2	chr11B3102521268	ProperStrand	1	1	-inf
chr13	97692691	97692762	LINE	L1VL2	L1	chr13L1VL297692022	NonProperStrand	1	chr17	39847480	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	96851661	96851751	LINE	L1MA5	L1	chr10L1MA596851434	ProperStrand	1	chr10	96851860	96851960	SINE	B1F1	Alu	chr10B1F196851889	NonProperStrand	1	1	-inf
chr2	30826977	30827077	SINE	B1_Mm	Alu	chr2B1_Mm30826955	ProperStrand	3	chr2	30827081	30828146	SINE	B3	B2	chr2B330828079	NonProperStrand	1	1	-inf
chr11	51705040	51705130	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n51705010	NonProperStrand	1	chr1	162636095	162636195	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	NonProperStrand	41	1	-inf
chr9	123461793	123462103	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	122123773	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	13	-6.1666
chr17	94124116	94124206	LINE	Lx8	L1	chr17Lx894124040	ProperStrand	1	chr17	94123875	94123975	LTR	MTD	MaLR	chr17MTD94123643	ProperStrand	1	1	-inf
chr15	96274591	96274705	protein_coding	Scaf11	intron	ENSMUSG00000033228	ProperStrand	7	chr16	19883802	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-13.3257
chr2	157318248	157318272	SINE	FAM	Alu	chr2FAM157318231	NonProperStrand	1	chr2	157318272	157318399	SINE	ID_B1	B4	chr2ID_B1157318250	NonProperStrand	1	1	-inf
chr17	39843707	39843784	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	103365399	103365445	protein_coding	Lrrc37a	exon	ENSMUSG00000078632	ProperStrand	12	2	-9.9919
chr15	83149721	83149760	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	chr5	109759556	109759662	protein_coding	Vmn2r16	intron	ENSMUSG00000092080	NonProperStrand	9	1	-14.2294
chr13	23409442	23409552	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	NonProperStrand	29	chr16	35981625	35981647	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-11.3553
chr15	86381418	86381508	DNA	BLACKJACK	AcHobo	chr15BLACKJACK86380653	ProperStrand	2	chr15	86381592	86381692	SINE	B4A	B4	chr15B4A86381589	ProperStrand	2	2	-inf
chr1	113967209	113967299	DNA	MER82	MER2_type	chr1MER82113967179	ProperStrand	1	chr1	113967577	113967677	LTR	MTD	MaLR	chr1MTD113967519	ProperStrand	1	1	-inf
chr6	71632136	71632205	LINE	Lx7	L1	chr6Lx771631885	ProperStrand	2	chr11	86695617	86695689	SINE	B3	B2	chr11B386695570	NonProperStrand	4	1	-22.1285
chr8	62076286	62076303	LINE	L1_Mus4	L1	chr8L1_Mus462075529	ProperStrand	1	chr17	39847562	39847592	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	110060110	110060209	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr17	29077796	29077886	protein_coding	Pxt1	intron	ENSMUSG00000045378	ProperStrand	12	1	-11.2549
chr15	100265937	100265988	SINE	B1_Mur3	Alu	chr15B1_Mur3100265869	ProperStrand	1	chr15	100254607	100254720	protein_coding	Gm5475	intron	ENSMUSG00000087444	ProperStrand	8	1	-inf
chrX	151783729	151783830	LINE	L1MB8	L1	chrXL1MB8151783719	NonProperStrand	3	chrX	151783540	151783630	SINE	ID_B1	B4	chrXID_B1151783533	NonProperStrand	3	3	-inf
chr2	30070945	30070984	SINE	B1_Mus1	Alu	chr2B1_Mus130070858	NonProperStrand	4	chr13	63628550	63628569	protein_coding	Ptch1	exon	ENSMUSG00000021466	ProperStrand	3	1	-inf
chr3	124010540	124010630	LINE	L1MC	L1	chr3L1MC124010385	ProperStrand	1	chr3	124010212	124010312	LINE	Lx	L1	chr3Lx124008391	NonProperStrand	1	1	-inf
chr9	65686337	65690149	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	chr3	135526411	135526787	protein_coding	Slc39a8	intron	ENSMUSG00000053897	ProperStrand	45	2	-18.7624
chr18	65669737	65669840	Low_complexity	GA-rich	Low_complexity	chr18GA-rich65669679	ProperStrand	1	chr12	3896980	3896997	protein_coding	Dnmt3a	exon	ENSMUSG00000020661	NonProperStrand	4	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-3.7976
chr13	6594408	6594498	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr10	41489192	41489222	protein_coding	Cep57l1	intron	ENSMUSG00000019813	ProperStrand	13	1	-13.8354
chr6	113367169	113370234	Simple_repeat	(CAAAA)n	Simple_repeat	chr6(CAAAA)n113370216	NonProperStrand	1	chr6	113366847	113366951	protein_coding	Rpusd3	intron	ENSMUSG00000051169	ProperStrand	1	1	-inf
chr1	136303448	136303478	protein_coding-noncoding	Cyb5r1	exon	ENSMUSG00000026456	NonProperStrand	1	chr1	136303526	136303653	protein_coding	Cyb5r1	intron	ENSMUSG00000026456	NonProperStrand	3	1	-inf
chr5	140639494	140639572	protein_coding	Mad1l1	intron	ENSMUSG00000029554	ProperStrand	144	chr5	121440022	121440064	protein_coding	Rph3a	intron	ENSMUSG00000029608	NonProperStrand	86	1	-9.5425
chr5	39798965	39798984	LINE	L1MA6	L1	chr5L1MA639798946	NonProperStrand	1	chr1	34040242	34040316	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-inf
chr17	3236904	3236952	SINE	B3	B2	chr17B33236870	NonProperStrand	1	chr4	43492914	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	1	-inf
chr13	51156351	51156465	LTR	MERVL-int	ERVL	chr13MERVL-int51151105	NonProperStrand	10	chr13	51156816	51156850	LTR	MT2_Mm	ERVL	chr13MT2_Mm51156526	NonProperStrand	2	2	-inf
chr9	110281287	110281316	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	101424293	101424312	protein_coding	Lepr	intron	ENSMUSG00000057722	NonProperStrand	24	1	-9.4083
chr5	146261164	146261238	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	80293744	80293801	SINE	B1_Mur1	Alu	chr10B1_Mur180293682	NonProperStrand	10	1	-8.6697
chr19	29473116	29473216	LTR	RLTR13D2	ERVK	chr19RLTR13D229472475	ProperStrand	1	chr19	29473825	29473915	Simple_repeat	(TTTC)n	Simple_repeat	chr19(TTTC)n29473762	NonProperStrand	1	1	-inf
chr15	77828983	77829105	protein_coding	Cacng2	intron	ENSMUSG00000019146	ProperStrand	169	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.8008
chrX	136214034	136214116	LTR	ORR1A4	MaLR	chrXORR1A4136213908	NonProperStrand	6	chr8	122893723	122893778	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-10.9448
chr7	56903268	56903368	SINE	RSINE1	B4	chr7RSINE156903251	NonProperStrand	1	chr7	57695458	57695548	protein_coding	Nell1	intron	ENSMUSG00000055409	NonProperStrand	17	1	-inf
chr7	80712287	80712349	SINE	ID_B1	B4	chr7ID_B180712198	ProperStrand	2	chr5	34353720	34353791	protein_coding	Poln	intron	ENSMUSG00000045102	NonProperStrand	133	1	-18.0270
chr2	93718744	93718808	SINE	B4	B4	chr2B493718708	NonProperStrand	1	chr13	36317946	36318035	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	1	-inf
chr19	18501385	18501405	LINE	L1_Mus4	L1	chr19L1_Mus418500501	ProperStrand	1	chr13	44869577	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr13	53032739	53032829	LTR	MTD	MaLR	chr13MTD53032755	NonProperStrand	1	chr13	53033107	53033207	LTR	MTD	MaLR	chr13MTD53033131	NonProperStrand	1	1	-inf
chr2	92284444	92284496	LINE	L1MA9	L1	chr2L1MA992284346	NonProperStrand	1	chr2	92284608	92284682	LINE	L2b	L2	chr2L2b92284627	NonProperStrand	1	1	-inf
chr17	77523750	77523840	LTR	MTE2a	MaLR	chr17MTE2a77523771	ProperStrand	1	chr13	76524344	76524444	protein_coding	Mctp1	intron	ENSMUSG00000021596	NonProperStrand	18	1	-inf
chr11	109011693	109011712	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	27324383	27325072	protein_coding	Nlrp9a	intron	ENSMUSG00000054102	NonProperStrand	76	1	-5.6355
chr5	138365234	138365343	LINE	L1M2	L1	chr5L1M2138363844	ProperStrand	1	chr8	95864845	95864878	LINE	Lx5	L1	chr8Lx595864721	ProperStrand	3	1	-inf
chr1	63246958	63247058	lincRNA	Gm11607	exon	ENSMUSG00000086730	ProperStrand	24	chr1	63246859	63246949	protein_coding	Gpr1	intron	ENSMUSG00000046856	NonProperStrand	66	1	-13.6874
chr11	66693065	66693155	SINE	B1_Mur3	Alu	chr11B1_Mur366693044	NonProperStrand	1	chr11	66692547	66692647	Simple_repeat	(GGAAA)n	Simple_repeat	chr11(GGAAA)n66692517	NonProperStrand	1	1	-inf
chr18	75164300	75164400	SINE	B1_Mus2	Alu	chr18B1_Mus275164302	NonProperStrand	1	chr18	75164165	75164255	SINE	B2_Mm1a	B2	chr18B2_Mm1a75164115	NonProperStrand	1	1	-inf
chr5	146261160	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	39337982	39338091	protein_coding	Rab19	intron	ENSMUSG00000029923	NonProperStrand	21	1	-7.1436
chr11	109012015	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr13	44869627	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.7306
chr8	45030161	45030242	LINE	L1M2	L1	chr8L1M245030053	ProperStrand	2	chr10	54311229	54311256	LTR	IAPEz-int	ERVK	chr10IAPEz-int54310002	NonProperStrand	1	1	-inf
chr17	93341130	93341221	LTR	ETnERV-int	ERVK	chr17ETnERV-int93340228	NonProperStrand	4	chr1	191073320	191073379	protein_coding	Kcnk2	intron	ENSMUSG00000037624	NonProperStrand	64	1	-17.6295
chr6	51466965	51467219	LTR	MT2A	ERVL	chr6MT2A51466966	NonProperStrand	10	chr6	51466638	51466955	SINE	B1F1	Alu	chr6B1F151466567	NonProperStrand	7	5	-23.9031
chr1	13626419	13626474	protein_coding	Lactb2	intron	ENSMUSG00000025937	ProperStrand	47	chr4	34851021	34851053	protein_coding	Cga	intron	ENSMUSG00000028298	NonProperStrand	13	1	-15.6404
chr15	36596646	36596997	SINE	B1F	Alu	chr15B1F36596690	NonProperStrand	1	chr1	138616614	138616647	lincRNA	Gm16880	intron	ENSMUSG00000085011	NonProperStrand	16	1	-inf
chr17	39846461	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	139467303	139467397	Simple_repeat	(TTCC)n	Simple_repeat	chr3(TTCC)n139467269	ProperStrand	1	1	-inf
chr18	43385797	43385878	protein_coding	Stk32a	intron	ENSMUSG00000039954	NonProperStrand	11	chr18	53867821	53867876	protein_coding	Cep120	intron	ENSMUSG00000048799	NonProperStrand	33	1	-16.7402
chr8	110810893	110810930	SINE	B4	B4	chr8B4110810856	NonProperStrand	2	chr13	22041294	22041326	protein_coding	Zfp184	intron	ENSMUSG00000006720	NonProperStrand	16	1	-inf
chr2	177517807	177517851	LINE	Lx8	L1	chr2Lx8177517688	NonProperStrand	1	chr17	39846932	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	88539506	88539553	SINE	ID_B1	B4	chr3ID_B188539380	ProperStrand	1	chr4	108593459	108595390	protein_coding	Rab3b	intron	ENSMUSG00000003411	ProperStrand	63	1	-inf
chr17	39847733	39847854	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	131006872	131006893	lincRNA	4930534D22Rik	intron	ENSMUSG00000091852	ProperStrand	1	1	-inf
chr17	39843645	39843723	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chrX	130131145	130131190	protein_coding	Pcdh19	intron	ENSMUSG00000051323	NonProperStrand	20	1	-4.5988
chr2	164796010	164796100	protein_coding	Slc12a5	intron	ENSMUSG00000017740	ProperStrand	54	chr9	103588378	103588479	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-10.5770
chr5	124646713	124712223	lincRNA	Gm16338	intron	ENSMUSG00000089842	ProperStrand	3	chr5	124712284	124717933	protein_coding	Mphosph9	intron	ENSMUSG00000038126	NonProperStrand	8	3	-inf
chr7	6541503	6541593	LTR	RLTR10D	ERVK	chr7RLTR10D6541527	NonProperStrand	1	chr7	6541106	6541206	LTR	RMER6-int	ERVK	chr7RMER6-int6540959	NonProperStrand	1	1	-inf
chr5	122806324	122817835	protein_coding	Vps29	intron	ENSMUSG00000029462	NonProperStrand	18	chr5	122817846	122821307	protein_coding	1500011H22Rik	intron	ENSMUSG00000029463	ProperStrand	18	3	-20.6187
chr2	152458997	152459087	protein_coding-noncoding	Rem1	utr5	ENSMUSG00000000359	ProperStrand	1	chr2	152459583	152459683	protein_coding	Rem1	intron	ENSMUSG00000000359	ProperStrand	3	1	-inf
chr4	100052302	100052439	protein_coding	Ror1	intron	ENSMUSG00000035305	ProperStrand	128	chr5	34819033	34819965	protein_coding	Fam193a	intron	ENSMUSG00000037210	ProperStrand	38	1	-11.4227
chr7	68022111	68022141	LINE	Lx9	L1	chr7Lx968022069	ProperStrand	1	chr14	20582982	20583025	protein_coding	Nid2	exon	ENSMUSG00000021806	NonProperStrand	20	1	-inf
chr17	39847229	39847329	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	72579608	72579965	protein_coding	Sugp1	intron	ENSMUSG00000011306	ProperStrand	15	2	-4.0614
chr17	24181335	24181352	protein_coding	Prss27	exon	ENSMUSG00000050762	NonProperStrand	15	chr19	8972569	8972975	protein_coding	Ganab	intron	ENSMUSG00000071650	ProperStrand	138	1	-13.1708
chr12	116368686	116368788	LINE	Lx5	L1	chr12Lx5116368232	ProperStrand	1	chr12	116368788	116368878	SINE	B1_Mus2	Alu	chr12B1_Mus2116368764	NonProperStrand	1	1	-inf
chr2	91885812	91885897	lincRNA	Gm13780	intron	ENSMUSG00000087197	NonProperStrand	50	chr2	91770928	91772317	protein_coding	Mdk	intron	ENSMUSG00000027239	NonProperStrand	8	2	-inf
chr4	137729116	137729209	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr5	72915330	72915386	protein_coding	Nfxl1	exon	ENSMUSG00000072889	NonProperStrand	20	1	-10.1563
chr6	96717237	96717327	LINE	L1Md_T	L1	chr6L1Md_T96712076	ProperStrand	1	chr6	96717419	96717519	LINE	L1Md_T	L1	chr6L1Md_T96717261	ProperStrand	1	1	-inf
chr12	54941545	54941561	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr14	48303015	48303032	protein_coding	Ktn1	intron	ENSMUSG00000021843	NonProperStrand	4	1	-16.0258
chr1	151363254	151363343	LTR	IAPEz-int	ERVK	chr1IAPEz-int151361779	NonProperStrand	9	chr11	32560916	32560938	protein_coding	Fbxw11	intron	ENSMUSG00000020271	ProperStrand	39	1	-16.8192
chr11	77496491	77496581	SINE	B1_Mus1	Alu	chr11B1_Mus177496432	ProperStrand	3	chr11	77496621	77496721	Simple_repeat	(GAAA)n	Simple_repeat	chr11(GAAA)n77496589	ProperStrand	3	3	-inf
chr17	39847958	39848021	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	122308758	122308808	protein_coding	Cux2	utr3	ENSMUSG00000072641	NonProperStrand	2	1	-5.4040
chr17	39846743	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	16763802	16763892	protein_coding	Vps13a	intron	ENSMUSG00000046230	NonProperStrand	5	1	-3.1907
chr17	31213100	31213150	protein_coding	Abcg1	intron	ENSMUSG00000024030	ProperStrand	3	chr17	32259061	32259155	protein_coding	Notch3	exon	ENSMUSG00000038146	ProperStrand	60	1	-18.4556
chr6	37418581	37418654	LINE	Lx9	L1	chr6Lx937418427	NonProperStrand	2	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr1	34049891	34049936	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-4.6321
chr8	105770883	105770920	LINE	Lx3_Mus	L1	chr8Lx3_Mus105770652	ProperStrand	1	chr8	105771156	105771233	LTR	LTRIS_Mus	ERV1	chr8LTRIS_Mus105770929	NonProperStrand	1	1	-inf
chr4	77882886	77882917	LTR	ORR1D2	MaLR	chr4ORR1D277882845	ProperStrand	1	chr4	129329217	129329314	protein_coding	Kpna6	intron	ENSMUSG00000003731	ProperStrand	20	1	-inf
chr13	59653088	59653167	protein_coding	Agtpbp1	intron	ENSMUSG00000021557	ProperStrand	60	chr5	140038758	140038795	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	1	-8.5977
chr1	187276427	187276490	lincRNA	Gm2061	intron	ENSMUSG00000085692	NonProperStrand	18	chr1	187279707	187279775	protein_coding	Slc30a10	intron	ENSMUSG00000026614	ProperStrand	13	1	-17.6266
chr1	42891962	42892052	LTR	ORR1E	MaLR	chr1ORR1E42891902	ProperStrand	1	chr1	42889291	42889324	LTR	RMER20B	ERVK	chr1RMER20B42888930	NonProperStrand	2	1	-inf
chr5	148336947	148337037	protein_coding	Pan3	intron	ENSMUSG00000029647	NonProperStrand	50	chr18	75815680	75815780	protein_coding	Ctif	intron	ENSMUSG00000052928	NonProperStrand	13	1	-15.5230
chr12	105692129	105692171	LTR	MTEb-int	MaLR	chr12MTEb-int105691858	ProperStrand	1	chr12	105692333	105692429	LTR	MTEb-int	MaLR	chr12MTEb-int105692301	ProperStrand	1	1	-inf
chr13	97502620	97502710	LINE	Lx2B	L1	chr13Lx2B97502633	NonProperStrand	2	chr13	97502708	97502808	Low_complexity	T-rich	Low_complexity	chr13T-rich97502703	ProperStrand	2	2	-inf
chr14	55743797	55745013	SINE	B3	B2	chr14B355744919	ProperStrand	3	chr14	55745177	55745267	SINE	ID_B1	B4	chr14ID_B155745134	ProperStrand	3	3	-inf
chr6	31217255	31217382	lincRNA	2210408F21Rik	intron	ENSMUSG00000087380	NonProperStrand	67	chr10	92664518	92664536	protein_coding	Cdk17	intron	ENSMUSG00000020015	ProperStrand	3	1	-18.1225
chr18	90151240	90151330	LINE	L1_Mus1	L1	chr18L1_Mus190147240	ProperStrand	2	chr18	90151418	90151518	LINE	L1_Mus1	L1	chr18L1_Mus190151422	ProperStrand	1	1	-inf
chr1	169497979	169498012	SINE	B4	B4	chr1B4169497862	NonProperStrand	1	chr9	72747674	72747725	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-inf
chr13	8839709	8839729	protein_coding	Wdr37	intron	ENSMUSG00000021147	ProperStrand	42	chr8	79676578	79676667	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	1	-11.0406
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr9	21142320	21142518	protein_coding	Slc44a2	intron	ENSMUSG00000057193	NonProperStrand	22	1	-11.8397
chr2	75857036	75857076	protein_coding	Pde11a	intron	ENSMUSG00000075270	NonProperStrand	79	chr12	22016253	22016334	pseudogene	Gm9282	.	ENSMUSG00000092226	ProperStrand	10	1	-15.1409
chr17	39847821	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	91714660	91714758	protein_coding-noncoding	Cryzl1	utr3	ENSMUSG00000058240	ProperStrand	2	1	-5.4040
chr17	45743018	45743065	SINE	B1_Mus2	Alu	chr17B1_Mus245742951	ProperStrand	2	chr17	29491046	29491103	SINE	B2_Mm1a	B2	chr17B2_Mm1a29490911	ProperStrand	2	1	-19.8939
chr13	97087240	97087317	LINE	L1VL2	L1	chr13L1VL297086374	ProperStrand	3	chr13	97073770	97073833	SINE	B3A	B2	chr13B3A97073725	ProperStrand	2	1	-20.2824
chr7	109519923	109524276	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr13	97190541	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-5.3033
chr4	25611606	25611631	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	chr6	52742713	52742784	protein_coding	Jazf1	intron	ENSMUSG00000063568	NonProperStrand	43	1	-12.5973
chr17	39846647	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	192847187	192847204	protein_coding	Mfsd7b	intron	ENSMUSG00000066595	ProperStrand	2	1	-5.3533
chr17	39846462	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	87649616	87650443	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n87649443	ProperStrand	1	1	-inf
chr7	4681866	4681956	Low_complexity	T-rich	Low_complexity	chr7T-rich4681883	NonProperStrand	1	chr7	4681998	4684321	SINE	RSINE1	B4	chr7RSINE14681986	NonProperStrand	1	1	-inf
chr12	73188158	73188258	protein_coding	Jkamp	intron	ENSMUSG00000005078	ProperStrand	17	chr12	73181857	73188162	protein_coding	2810055F11Rik	intron	ENSMUSG00000019718	NonProperStrand	3	1	-20.3649
chrX	155337769	155337798	LINE	L1Md_F2	L1	chrXL1Md_F2155337180	NonProperStrand	1	chr8	80840582	80840663	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-inf
chr6	4754709	4754748	LINE	Lx2	L1	chr6Lx24754613	ProperStrand	26	chr5	150199252	150199365	processed_transcript	Gm20488	.	ENSMUSG00000092327	ProperStrand	21	1	-15.8536
chr5	48253155	48253212	LINE	L1Md_T	L1	chr5L1Md_T48252499	NonProperStrand	2	chr2	5379271	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr14	11794952	11795008	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	chr1	84814961	84839293	protein_coding	Fbxo36	intron	ENSMUSG00000073633	NonProperStrand	31	1	-9.2011
chr17	39846451	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	47866717	47866810	SINE	PB1D9	Alu	chr6PB1D947866728	NonProperStrand	2	2	-inf
chr8	70895492	70895660	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr16	44111552	44111618	protein_coding	Atp6v1a	intron	ENSMUSG00000052459	ProperStrand	36	1	-11.5959
chr3	153910603	153910632	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr15	96214527	96214644	protein_coding	Arid2	intron	ENSMUSG00000033237	ProperStrand	28	1	-10.4049
chr17	15101506	15101577	protein_coding	Phf10	intron	ENSMUSG00000023883	NonProperStrand	6	chr17	15090165	15090246	protein_coding	1600012H06Rik	intron	ENSMUSG00000050088	ProperStrand	2	1	-inf
chr16	8705233	8705323	protein_coding-noncoding	Usp7	utr3	ENSMUSG00000022710	ProperStrand	5	chr16	8704556	8704656	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	1	-13.8291
chr1	72388123	72388232	protein_coding	Xrcc5	intron	ENSMUSG00000026187	ProperStrand	76	chr9	110940303	110940354	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	3	-inf
chr10	18525618	18525670	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int18525065	ProperStrand	1	chr17	39846428	39846470	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	114753133	114753223	SINE	B1_Mus1	Alu	chr8B1_Mus1114753067	NonProperStrand	3	chr8	114753271	114753371	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n114753246	ProperStrand	3	3	-inf
chr15	55177991	55178061	protein_coding	Col14a1	intron	ENSMUSG00000022371	ProperStrand	77	chr15	76071538	76071608	protein_coding	Parp10	intron	ENSMUSG00000063268	ProperStrand	64	1	-11.3910
chr11	76177572	76177662	protein_coding	Nxn	intron	ENSMUSG00000020844	NonProperStrand	7	chr10	63077405	63077505	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-14.1724
chr18	80126746	80126788	Simple_repeat	(TAGA)n	Simple_repeat	chr18(TAGA)n80126747	NonProperStrand	4	chr8	124268598	124268714	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	4	-inf
chr17	39847330	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	24061873	24077847	protein_coding	Scgn	intron	ENSMUSG00000021337	ProperStrand	6	2	-5.2646
chr17	39847440	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	127219052	127219081	LTR	MTEa	MaLR	chr2MTEa127218775	NonProperStrand	1	1	-inf
chr9	27100316	27100389	Simple_repeat	(TCC)n	Simple_repeat	chr9(TCC)n27100280	ProperStrand	1	chr11	102808826	102808904	lincRNA	Gm17536	intron	ENSMUSG00000091056	NonProperStrand	62	1	-inf
chr4	34876122	34876212	Simple_repeat	(CATATA)n	Simple_repeat	chr4(CATATA)n34876109	ProperStrand	2	chr2	165827823	165827924	protein_coding	Ncoa3	intron	ENSMUSG00000027678	ProperStrand	21	1	-20.6625
chr12	51348032	51348071	LINE	L1Md_A	L1	chr12L1Md_A51343186	NonProperStrand	3	chr17	39847476	39847525	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr2	3715868	3715959	LTR	RLTR13D1	ERVK	chr2RLTR13D13715293	NonProperStrand	1	chr15	96687510	96687574	SINE	ID_B1	B4	chr15ID_B196687505	ProperStrand	2	1	-inf
chr15	53342277	53342320	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	chr15	53118685	53118723	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	1	-7.0149
chr9	91039180	91039279	LTR	RMER20B	ERVK	chr9RMER20B91039057	ProperStrand	1	chr9	91038930	91039020	LTR	RMER4B	ERVK	chr9RMER4B91038526	ProperStrand	1	1	-inf
chr7	56185542	56185632	LTR	ORR1E	MaLR	chr7ORR1E56185336	NonProperStrand	1	chr7	56185067	56185167	SINE	ID_B1	B4	chr7ID_B156184991	ProperStrand	1	1	-inf
chr2	45822138	45822238	LINE	L1MB3	L1	chr2L1MB345821912	NonProperStrand	1	chr2	45822344	45822434	LINE	L1Md_F2	L1	chr2L1Md_F245822361	NonProperStrand	1	1	-inf
chr8	78724023	78724068	LINE	L1Md_T	L1	chr8L1Md_T78724010	NonProperStrand	8	chr2	5379299	5379334	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.6062
chr5	62604654	62606195	LINE	L1Md_T	L1	chr5L1Md_T62605942	NonProperStrand	1	chr11	113901594	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-inf
chrX	75534605	75534622	LINE	L1VL1	L1	chrXL1VL175534598	ProperStrand	1	chr5	132174259	132174388	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-inf
chr17	39847431	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	110206966	110207056	SINE	B3	B2	chr9B3110206973	NonProperStrand	1	1	-inf
chr7	30192624	30192668	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	ProperStrand	147	chr11	4820558	4820592	protein_coding	Thoc5	intron	ENSMUSG00000034274	NonProperStrand	16	1	-12.9115
chr9	22029278	22029368	SINE	B1_Mus2	Alu	chr9B1_Mus222029301	NonProperStrand	1	chr9	22029172	22029272	SINE	B2_Mm1t	B2	chr9B2_Mm1t22029072	NonProperStrand	1	1	-inf
chr2	153400456	153400514	DNA	URR1A	MER1_type	chr2URR1A153400330	NonProperStrand	2	chr17	39847736	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr14	63138090	63138113	LINE	Lx9	L1	chr14Lx963137420	ProperStrand	2	chr14	63136466	63138078	Simple_repeat	(GA)n	Simple_repeat	chr14(GA)n63136449	ProperStrand	1	1	-inf
chr6	83118472	83118489	protein_coding	Dctn1	intron	ENSMUSG00000031865	ProperStrand	11	chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-12.0889
chr14	120333381	120333478	LINE	L1Md_F	L1	chr14L1Md_F120332944	ProperStrand	9	chr12	38861381	38865558	protein_coding	Dgkb	intron	ENSMUSG00000036095	NonProperStrand	29	1	-17.3096
chr3	16199487	16199516	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int16198181	ProperStrand	5	chr3	16200991	16201119	LTR	MuRRS4-int	ERV1	chr3MuRRS4-int16200066	NonProperStrand	2	1	-23.2669
chr6	113593315	113595889	protein_coding	Irak2	intron	ENSMUSG00000060477	NonProperStrand	2	chr11	26457950	26458051	protein_coding	Vrk2	intron	ENSMUSG00000064090	NonProperStrand	29	1	-19.5186
chr16	18066456	18066472	protein_coding-noncoding	Dgcr6	utr5	ENSMUSG00000003531	ProperStrand	2	chr5	104439460	104440267	protein_coding	Hsd17b11	intron	ENSMUSG00000029311	NonProperStrand	34	1	-19.8869
chr17	48467565	48467614	LTR	RMER10B	ERVL	chr17RMER10B48467373	NonProperStrand	2	chr17	48465720	48465799	protein_coding	B430306N03Rik	utr3	ENSMUSG00000043740	ProperStrand	4	2	-inf
chr4	149244705	149244795	SINE	B3	B2	chr4B3149244602	ProperStrand	1	chr4	149244930	149245030	SINE	B3	B2	chr4B3149244885	ProperStrand	1	1	-inf
chr9	96691454	96691477	LTR	RMER13B	ERVK	chr9RMER13B96691453	ProperStrand	1	chr9	96691143	96691258	SINE	B3	B2	chr9B396691163	ProperStrand	2	1	-inf
chr12	102633849	102633939	LINE	L1Md_A	L1	chr12L1Md_A102633834	NonProperStrand	10	chr12	102633751	102633851	LINE	L1_Mus2	L1	chr12L1_Mus2102633266	NonProperStrand	9	5	-inf
chr2	121601559	121601662	protein_coding	Frmd5	intron	ENSMUSG00000027238	ProperStrand	82	chr3	41473387	41473433	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	1	-8.6520
chr3	68549388	68549478	LTR	RMER15	ERVL	chr3RMER1568549307	ProperStrand	2	chr1	72711756	72712197	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	61	1	-19.2245
chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	15	chr5	125320511	125320637	protein_coding	Ccdc92	intron	ENSMUSG00000037979	ProperStrand	54	1	-15.0576
chr17	60251518	60251618	LINE	L1M2	L1	chr17L1M260251319	ProperStrand	1	chr17	60251678	60251768	LINE	L1M2	L1	chr17L1M260251622	ProperStrand	1	1	-inf
chr4	135270219	135270285	SINE	B4A	B4	chr4B4A135270210	NonProperStrand	1	chr4	135246929	135247010	protein_coding	Il28ra	intron	ENSMUSG00000062157	NonProperStrand	41	1	-inf
chr6	122319971	122319992	LINE	L1M5	L1	chr6L1M5122319973	NonProperStrand	13	chr6	122320980	122321898	LTR	RLTR12B	ERVK	chr6RLTR12B122320697	ProperStrand	10	1	-19.0457
chr17	39846660	39846758	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	91270379	91270396	protein_coding	Olig1	exon	ENSMUSG00000046160	NonProperStrand	4	1	-3.6552
chr5	146261045	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	ProperStrand	3	chr8	13167924	13167949	protein_coding	Lamp1	exon	ENSMUSG00000031447	NonProperStrand	11	1	-inf
chr3	157548267	157548313	LINE	Lx8	L1	chr3Lx8157548163	NonProperStrand	3	chr5	138181970	138181986	protein_coding	6430598A04Rik	intron	ENSMUSG00000045348	ProperStrand	11	1	-inf
chr15	100789907	100790923	protein_coding	Scn8a	intron	ENSMUSG00000023033	ProperStrand	29	chr15	79076913	79076996	protein_coding	Pick1	intron	ENSMUSG00000068206	ProperStrand	8	1	-17.5401
chr3	89894174	89894264	protein_coding-noncoding	Tpm3	utr5	ENSMUSG00000027940	ProperStrand	1	chr3	89894515	89894615	protein_coding	Tpm3	intron	ENSMUSG00000027940	ProperStrand	3	1	-inf
chr5	146261024	146261070	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	38529266	38529375	processed_transcript	Gm13587	.	ENSMUSG00000087062	ProperStrand	12	2	-13.3186
chr11	70008311	70008421	LTR	MLT1A	MaLR	chr11MLT1A70008281	ProperStrand	5	chr11	70007915	70008136	SINE	B4A	B4	chr11B4A70007984	NonProperStrand	5	5	-inf
chr17	39847692	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	86598176	86598244	LTR	RLTR11A2	ERVK	chr4RLTR11A286597906	ProperStrand	1	1	-inf
chr8	109829586	109829617	protein_coding	Nfat5	intron	ENSMUSG00000003847	ProperStrand	41	chr18	69682081	69682102	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	1	-11.0328
chr17	70963741	70963810	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	152808329	152808388	protein_coding	Ttll9	intron	ENSMUSG00000074673	NonProperStrand	58	1	-6.2744
chr13	21200270	21200290	LTR	RMER13A	ERVK	chr13RMER13A21199786	ProperStrand	5	chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr19	44304736	44304796	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	chr9	110238424	110238485	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-5.4088
chr17	39843479	39843589	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	48172748	48195222	protein_coding	Fam55d	intron	ENSMUSG00000044229	ProperStrand	43	2	-5.4390
chr9	113807800	113807869	protein_coding	Clasp2	intron	ENSMUSG00000033392	ProperStrand	70	chr11	113901594	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-10.1447
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr10	127304219	127304317	protein_coding	BC089597	intron	ENSMUSG00000074639	NonProperStrand	13	1	-15.5230
chr17	39846286	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	72711708	72724175	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	61	8	-3.7681
chr2	31086945	31087053	LTR	RMER17B	ERVK	chr2RMER17B31086596	NonProperStrand	1	chr7	6151050	6151090	protein_coding	Galp	intron	ENSMUSG00000034660	NonProperStrand	35	1	-inf
chr17	39846353	39846412	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	156682587	156682674	protein_coding	4930518I15Rik	utr3	ENSMUSG00000074629	ProperStrand	3	1	-4.3017
chr17	39848661	39848705	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	35510649	35510746	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	4	-3.8802
chr17	39846583	39846620	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	160073407	160073474	Simple_repeat	(CA)n	Simple_repeat	chrX(CA)n160073408	ProperStrand	1	1	-inf
chr18	88057632	88057722	LINE	L1Md_F2	L1	chr18L1Md_F288055611	ProperStrand	1	chr18	88057795	88057895	LINE	L1Md_F2	L1	chr18L1Md_F288057638	ProperStrand	1	1	-inf
chr12	112974699	112974717	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	5	-17.8238
chrX	51469223	51469323	LINE	L1Md_F2	L1	chrXL1Md_F251469193	ProperStrand	1	chrX	51469102	51469192	LINE	L1_Mm	L1	chrXL1_Mm51468469	NonProperStrand	1	1	-inf
chr2	133116689	133116789	LINE	L1_Mur1	L1	chr2L1_Mur1133115708	ProperStrand	1	chr2	133117008	133117098	LINE	Lx3_Mus	L1	chr2Lx3_Mus133116931	NonProperStrand	1	1	-inf
chr17	39843488	39843559	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	141176696	141176760	protein_coding	Slc25a34	intron	ENSMUSG00000040740	NonProperStrand	6	1	-7.0670
chr11	106155369	106155385	LTR	IAPEz-int	ERVK	chr11IAPEz-int106154362	NonProperStrand	3	chr17	39847385	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39847082	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	146344690	146344709	protein_coding	Samd13	intron	ENSMUSG00000048652	NonProperStrand	2	1	-6.5615
chr19	39286405	39286495	LTR	MERVK26-int	ERVK	chr19MERVK26-int39285343	NonProperStrand	1	chr19	39286506	39286606	LTR	RLTR14	ERV1	chr19RLTR1439286477	ProperStrand	1	1	-inf
chr17	39847976	39848005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	61170278	61170297	SINE	MIRb	MIR	chr9MIRb61170107	ProperStrand	3	1	-4.3512
chr5	135156393	135156444	protein_coding	Limk1	intron	ENSMUSG00000029674	NonProperStrand	69	chr5	135154449	135156378	protein_coding	Gm10369	intron	ENSMUSG00000072573	ProperStrand	3	2	-inf
chr17	21346274	21346364	LINE	L1Md_T	L1	chr17L1Md_T21341114	ProperStrand	1	chr17	21346771	21346871	LINE	L1Md_T	L1	chr17L1Md_T21346471	ProperStrand	1	1	-inf
chr1	72884083	72884106	protein_coding	Igfbp2	intron	ENSMUSG00000039323	ProperStrand	2	chr12	79483612	79483704	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-14.3601
chr4	53445715	53445815	LTR	MLT1A1	MaLR	chr4MLT1A153445735	ProperStrand	3	chr4	53445613	53445703	LTR	RMER15	ERVL	chr4RMER1553445443	NonProperStrand	3	3	-inf
chr5	24491176	24491240	protein_coding	Prkag2	intron	ENSMUSG00000028944	NonProperStrand	128	chr5	24492298	24492378	protein_coding	1500035N22Rik	intron	ENSMUSG00000059631	ProperStrand	21	4	-21.1449
chr11	85098386	85098437	LINE	Lx8	L1	chr11Lx885098381	ProperStrand	1	chr11	85098838	85098946	LTR	RLTR12B	ERVK	chr11RLTR12B85098656	ProperStrand	1	1	-inf
chr16	33062167	33062251	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr16	33063315	33063381	protein_coding	Lmln	intron	ENSMUSG00000022802	ProperStrand	22	1	-15.7782
chr18	75076158	75076265	LINE	Lx9	L1	chr18Lx975075980	ProperStrand	1	chr2	152332219	152332242	Simple_repeat	(CAAAA)n	Simple_repeat	chr2(CAAAA)n152332205	NonProperStrand	1	1	-inf
chr10	4358302	4359275	LINE	L1_Mus2	L1	chr10L1_Mus24357960	NonProperStrand	20	chr9	123461965	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-5.3310
chr4	32277927	32278027	LINE	Lx2	L1	chr4Lx232277800	NonProperStrand	1	chr17	39846423	39846513	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-6.1835
chr1	52430374	52430464	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int52430386	ProperStrand	3	chr1	52430149	52430249	LTR	MTA_Mm	MaLR	chr1MTA_Mm52429868	ProperStrand	1	1	-inf
chr7	37060786	37060876	LINE	L1M5	L1	chr7L1M537060803	NonProperStrand	1	chr7	37060530	37060631	LINE	Lx9	L1	chr7Lx937060453	ProperStrand	1	1	-inf
chr3	44318130	44318230	LINE	Lx2	L1	chr3Lx244317912	ProperStrand	1	chr3	44318337	44318427	LTR	RMER6D	ERVK	chr3RMER6D44318305	NonProperStrand	1	1	-inf
chr10	121466223	121466285	protein_coding	Srgap1	intron	ENSMUSG00000020121	ProperStrand	69	chr7	30179264	30179316	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	NonProperStrand	39	1	-12.6112
chr5	118731007	118731425	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n118731355	ProperStrand	1	chr12	71975469	71975504	protein_coding	Frmd6	intron	ENSMUSG00000048285	NonProperStrand	7	1	-inf
chr3	63351174	63351269	LINE	Lx3_Mus	L1	chr3Lx3_Mus63350902	NonProperStrand	1	chr12	86460549	86460601	protein_coding	Dlst	intron	ENSMUSG00000004789	NonProperStrand	77	1	-inf
chr8	41873736	41873826	LINE	L1VL4	L1	chr8L1VL441873714	ProperStrand	1	chr8	41873520	41873620	LINE	MusHAL1	L1	chr8MusHAL141873540	NonProperStrand	1	1	-inf
chr8	83574552	83574652	LINE	Lx3_Mus	L1	chr8Lx3_Mus83571406	ProperStrand	29	chr8	83574690	83574780	LTR	MTA_Mm	MaLR	chr8MTA_Mm83574652	NonProperStrand	4	4	-inf
chr14	78681527	78681557	protein_coding	Tnfsf11	intron	ENSMUSG00000022015	ProperStrand	100	chr17	14991474	14991494	protein_coding	Wdr27	intron	ENSMUSG00000046991	ProperStrand	6	1	-15.7793
chr17	40279585	40279675	LINE	L1_Mus3	L1	chr17L1_Mus340278333	NonProperStrand	1	chr9	19657908	19658008	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr19	5801674	5801729	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr8	47863908	47864083	protein_coding	Irf2	intron	ENSMUSG00000031627	NonProperStrand	109	1	-3.3248
chr9	78479458	78479633	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-4.4611
chr7	143291082	143291182	LTR	ORR1A4	MaLR	chr7ORR1A4143290837	ProperStrand	12	chr9	60806628	60806718	LTR	RMER12	ERVK	chr9RMER1260806647	ProperStrand	2	2	-inf
chr6	39592957	39593047	protein_coding-noncoding	Braf	utr3	ENSMUSG00000002413	NonProperStrand	5	chr6	39593210	39593310	protein_coding	Braf	intron	ENSMUSG00000002413	NonProperStrand	15	3	-inf
chr17	39847778	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	38036171	38036191	LTR	MTA_Mm	MaLR	chr1MTA_Mm38035837	NonProperStrand	2	1	-5.4040
chr2	154860269	154860327	protein_coding	a	intron	ENSMUSG00000027596	ProperStrand	61	chr9	110942568	110942630	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-10.8839
chr5	122850823	122850923	protein_coding	Arpc3	intron	ENSMUSG00000029465	ProperStrand	11	chr19	45916740	45916830	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	5	-21.0743
chr5	22663329	22663447	LINE	MusHAL1	L1	chr5MusHAL122662721	ProperStrand	1	chr3	100772634	100772657	protein_coding	Ttf2	intron	ENSMUSG00000033222	ProperStrand	1	1	-inf
chr1	36614277	36614299	protein_coding	Sema4c	utr5	ENSMUSG00000026121	ProperStrand	17	chr6	32950106	32950201	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-12.1290
chr9	123461991	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	50803138	50803202	protein_coding	Sik2	intron	ENSMUSG00000037112	NonProperStrand	15	1	-3.5950
chr6	54599307	54599362	LTR	RMER5	ERV1	chr6RMER554598892	ProperStrand	1	chr6	54614197	54614263	SINE	MIRb	MIR	chr6MIRb54614143	NonProperStrand	1	1	-inf
chr5	146261024	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	80681041	80681153	protein_coding	Dhx57	intron	ENSMUSG00000035051	ProperStrand	50	1	-5.4178
chr9	110281291	110281343	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr15	27597220	27597287	protein_coding	Fam105a	intron	ENSMUSG00000056069	ProperStrand	22	1	-9.5855
chr12	110851674	110851752	lincRNA	Rian	intron	ENSMUSG00000091793	ProperStrand	27	chr2	140011056	140011117	protein_coding	2310003L22Rik	intron	ENSMUSG00000027384	NonProperStrand	20	1	-15.8768
chr9	21046983	21047073	SINE	B1_Mus2	Alu	chr9B1_Mus221046975	ProperStrand	1	chr9	21047330	21047430	protein_coding	S1pr5	utr3	ENSMUSG00000045087	NonProperStrand	1	1	-inf
chr17	39847977	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	92768832	92768908	protein_coding	Vmn2r71	intron	ENSMUSG00000091205	ProperStrand	5	1	-3.2379
chr11	69668862	69669730	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-5.3662
chr14	73891029	73891129	LTR	ORR1D2	MaLR	chr14ORR1D273890789	ProperStrand	1	chr14	73890700	73890790	LTR	RMER17B	ERVK	chr14RMER17B73889914	NonProperStrand	1	1	-inf
chr15	49716701	49716791	LINE	Lx6	L1	chr15Lx649716698	NonProperStrand	1	chr15	49716422	49716522	LTR	RLTR20B3	ERVK	chr15RLTR20B349716238	ProperStrand	1	1	-inf
chr5	146261006	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	2	-8.3925
chr9	40803580	40803656	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr19	32219204	32219270	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-5.5180
mmu-miR-3968	3	21	miRNA	mmu-miR-3968	.	mmu-miR-3968	ProperStrand	12	chr4	117153982	117154370	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-12.5264
chrX	58770179	58770199	SINE	B3	B2	chrXB358770119	NonProperStrand	1	chr9	123461848	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	136465047	136465142	SINE	ID4	ID	chr5ID4136465066	ProperStrand	1	1	-inf
chr4	116551630	116551656	protein_coding	Zswim5	intron	ENSMUSG00000033948	ProperStrand	54	chr10	43348014	43348087	protein_coding	F930017D23Rik	intron	ENSMUSG00000075184	ProperStrand	41	1	-13.0042
chrX	37082903	37083003	LINE	Lx9	L1	chrXLx937082407	ProperStrand	11	chrX	37083053	37083143	LINE	Lx9	L1	chrXLx937083067	ProperStrand	7	3	-inf
chr16	20327797	20327887	LINE	L1_Mur3	L1	chr16L1_Mur320327714	ProperStrand	1	chr17	39847954	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	79740274	79741847	protein_coding	Dazap1	intron	ENSMUSG00000069565	NonProperStrand	17	3	-3.6562
chr14	67804518	67804608	DNA	MER2	MER2_type	chr14MER267804507	NonProperStrand	5	chr14	67804322	67804422	SINE	B2_Mm2	B2	chr14B2_Mm267804262	NonProperStrand	5	5	-inf
chr2	11546406	11546467	SINE	B1F2	Alu	chr2B1F211546336	ProperStrand	1	chr13	23698153	23698224	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	ProperStrand	11	1	-inf
chr8	18617616	18617681	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr19	8890434	8890513	protein_coding	Ttc9c	exon	ENSMUSG00000071660	NonProperStrand	10	1	-10.5565
chr10	77132377	77132467	SINE	B1_Mm	Alu	chr10B1_Mm77132379	ProperStrand	2	chr10	77132240	77132340	SINE	B1_Mus1	Alu	chr10B1_Mus177132202	NonProperStrand	3	2	-inf
chr17	39847642	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	90830368	90830390	protein_coding	Adcy7	utr5	ENSMUSG00000031659	NonProperStrand	4	1	-3.7035
chr17	39847864	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	19918881	19921033	LTR	ORR1D1	MaLR	chr7ORR1D119920857	ProperStrand	1	1	-inf
chr17	39846415	39846823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	189126289	189126310	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	6	-4.4206
chr11	109011826	109011878	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr18	61146231	61146331	protein_coding	Camk2a	utr3	ENSMUSG00000024617	NonProperStrand	18	1	-8.5158
chr17	39847552	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	23446773	23446794	protein_coding	Zfp322a	utr3	ENSMUSG00000046351	ProperStrand	4	1	-3.7035
chr17	39846419	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	107057100	107058118	protein_coding	Nae1	intron	ENSMUSG00000031878	NonProperStrand	10	2	-3.6091
chr17	39847252	39847354	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	120572780	120572807	protein_coding-noncoding	Stra13	utr3	ENSMUSG00000025144	ProperStrand	4	1	-4.8204
chr3	89426579	89426616	protein_coding	Kcnn3	intron	ENSMUSG00000000794	ProperStrand	88	chr12	88448785	88448807	protein_coding	Pomt2	utr3	ENSMUSG00000034126	NonProperStrand	15	1	-14.0757
chr17	39846353	39846411	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	5794745	5794845	protein_coding-noncoding	Sec61a2	utr3	ENSMUSG00000025816	ProperStrand	4	2	-6.6967
chr12	13147483	13147583	LINE	L1M5	L1	chr12L1M513147452	ProperStrand	1	chr12	13147239	13147329	SINE	B4	B4	chr12B413147149	NonProperStrand	1	1	-inf
chr2	85721892	85721909	LINE	L1_Mur3	L1	chr2L1_Mur385720875	NonProperStrand	1	chr7	112763384	112763478	protein_coding	Trim3	intron	ENSMUSG00000036989	NonProperStrand	139	1	-inf
chr17	39845404	39845543	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	5001510	5001528	LTR	MURVY-LTR	ERV1	chr2MURVY-LTR5001494	ProperStrand	1	1	-inf
chr1	163399874	163399957	LTR	RLTR10-int	ERVK	chr1RLTR10-int163399823	NonProperStrand	1	chr1	163399474	163399523	LTR	RLTR27	ERVK	chr1RLTR27163399402	NonProperStrand	1	1	-inf
chr11	62405989	62406070	protein_coding	Trpv2	intron	ENSMUSG00000018507	NonProperStrand	22	chr11	62423015	62433581	protein_coding	BC046404	intron	ENSMUSG00000046417	ProperStrand	20	1	-16.3095
chr7	111145475	111145492	SINE	B1_Mur3	Alu	chr7B1_Mur3111145409	ProperStrand	1	chr2	31577613	31577720	protein_coding	Abl1	intron	ENSMUSG00000026842	ProperStrand	150	1	-inf
chr17	39843829	39843903	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	85203408	85203484	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	NonProperStrand	10	1	-6.4551
chr6	88476157	88476250	LINE	L1Md_F3	L1	chr6L1Md_F388475621	ProperStrand	2	chr17	39847877	39847928	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39846659	39846710	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	59988678	59995432	Simple_repeat	(GA)n	Simple_repeat	chr7(GA)n59988628	NonProperStrand	1	1	-inf
chr11	76587133	76587155	LINE	L1MC4	L1	chr11L1MC476587032	ProperStrand	9	chr17	39848098	39848130	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-4.9272
chr2	74564080	74564196	protein_coding	Hoxd4	intron	ENSMUSG00000042464	NonProperStrand	3	chr2	74558989	74559027	protein_coding	Hoxd3	intron	ENSMUSG00000079277	NonProperStrand	10	1	-20.3377
chr11	3392020	3392141	protein_coding-noncoding	Pla2g3	utr5	ENSMUSG00000034579	NonProperStrand	4	chr9	123462015	123462052	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr1	74279925	74279998	LTR	RLTR33	ERVK	chr1RLTR3374279582	NonProperStrand	1	chr1	74280123	74280186	SINE	B2_Mm2	B2	chr1B2_Mm274280011	NonProperStrand	14	1	-inf
chr6	3201354	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	32099639	32099710	protein_coding	Pigx	utr5	ENSMUSG00000023791	ProperStrand	9	1	-6.5801
chr15	15844502	15844535	LINE	L1Md_T	L1	chr15L1Md_T15844286	ProperStrand	1	chr9	123461919	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	43528023	43528123	LTR	ORR1E	MaLR	chr10ORR1E43528051	NonProperStrand	1	chr10	43528148	43528238	LTR	RMER20A	ERVK	chr10RMER20A43528125	NonProperStrand	2	1	-inf
chr10	76636663	76636763	SINE	B2_Mm1a	B2	chr10B2_Mm1a76636652	NonProperStrand	1	chr10	76636857	76636947	SINE	ID_B1	B4	chr10ID_B176636845	NonProperStrand	1	1	-inf
chr9	20945774	20945873	protein_coding	Cdc37	intron	ENSMUSG00000019471	ProperStrand	31	chr8	13175209	13175250	protein_coding	Lamp1	utr3	ENSMUSG00000031447	ProperStrand	46	1	-13.8941
chr19	10912827	10912881	LTR	MTE2a	MaLR	chr19MTE2a10912744	NonProperStrand	1	chr19	10915007	10915068	protein_coding	Slc15a3	intron	ENSMUSG00000024737	ProperStrand	2	1	-inf
chr9	64191631	64193740	LTR	MTE2b	MaLR	chr9MTE2b64193631	ProperStrand	1	chr9	64187680	64191280	protein_coding	Dis3l	intron	ENSMUSG00000032396	ProperStrand	29	1	-inf
chr1	171503048	171503147	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr4	83264548	83264576	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-10.8513
chr7	27961219	27961296	protein_coding	Rab4b	intron	ENSMUSG00000053291	ProperStrand	9	chr7	141106830	141107170	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-13.6981
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr6	108380952	108381002	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	1	-3.1464
chr11	116604466	116605034	pseudogene	Gm11735	.	ENSMUSG00000078586	ProperStrand	7	chr4	129057125	129057155	pseudogene	Gm12980	.	ENSMUSG00000082468	NonProperStrand	1	1	-inf
chr18	90582598	90582653	LINE	L1Md_F2	L1	chr18L1Md_F290581557	ProperStrand	3	chr18	90581102	90581172	LINE	L1_Mus1	L1	chr18L1_Mus190580916	ProperStrand	1	1	-inf
chr18	34907667	34908068	protein_coding	Cdc25c	intron	ENSMUSG00000044201	ProperStrand	42	chr1	7122694	7122743	protein_coding	Pcmtd1	intron	ENSMUSG00000051285	ProperStrand	119	1	-11.3666
chr2	153112443	153112530	SINE	B2_Mm2	B2	chr2B2_Mm2153112467	ProperStrand	1	chr2	153117581	153117611	protein_coding	Kif3b	intron	ENSMUSG00000027475	ProperStrand	32	1	-inf
chr2	57614203	57614303	LINE	L1Md_F2	L1	chr2L1Md_F257612818	ProperStrand	2	chr2	57614451	57614541	LINE	L1_Mur1	L1	chr2L1_Mur157614368	ProperStrand	2	2	-inf
chr9	44159070	44163365	protein_coding	Vps11	intron	ENSMUSG00000032127	ProperStrand	7	chr8	119905987	119906003	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-14.6795
chr17	39843427	39843491	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	58531133	58537568	lincRNA	4930593A02Rik	intron	ENSMUSG00000087019	ProperStrand	27	1	-4.0202
chr17	39847562	39847596	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	135386644	135386763	LTR	MLT2B4	ERVL	chr1MLT2B4135386630	ProperStrand	1	1	-inf
chr2	22744852	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chrX	50569608	50569663	protein_coding	Plac1	intron	ENSMUSG00000061082	ProperStrand	82	1	-6.1908
chr17	39846694	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	95473522	95473579	SINE	ID_B1	B4	chr11ID_B195473493	NonProperStrand	1	1	-inf
chr7	56019300	56019378	LINE	L1MD1	L1	chr7L1MD156019156	ProperStrand	1	chr7	56019687	56019761	LINE	L1MD1	L1	chr7L1MD156019513	ProperStrand	1	1	-inf
chr11	84372529	84372629	SINE	B1_Mus1	Alu	chr11B1_Mus184372495	ProperStrand	1	chr11	84372405	84372495	SINE	RSINE1	B4	chr11RSINE184372394	ProperStrand	1	1	-inf
chr14	19278166	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr3	31060417	31060497	protein_coding	Cldn11	intron	ENSMUSG00000037625	ProperStrand	10	1	-15.2175
chr17	39846428	39846497	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	26018016	26018076	protein_coding	0610011F06Rik	intron	ENSMUSG00000025731	NonProperStrand	3	1	-4.3017
chr19	5839292	5839358	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	chr5	118071664	118071740	protein_coding	Ksr2	intron	ENSMUSG00000061578	NonProperStrand	228	1	-6.7064
chr11	61857876	61857938	protein_coding-noncoding	Specc1	utr5	ENSMUSG00000042331	NonProperStrand	1	chr11	61862463	61862522	protein_coding	Specc1	intron	ENSMUSG00000042331	NonProperStrand	50	1	-inf
chr11	116757714	116757744	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr9	59667602	59667724	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-6.9039
chr5	146261024	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	10354941	10355041	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	NonProperStrand	43	1	-5.7137
chr8	106241203	106241303	LTR	MT2A	ERVL	chr8MT2A106240907	NonProperStrand	20	chr8	106237299	106237389	Other	RMER1A	Other	chr8RMER1A106236994	NonProperStrand	7	5	-inf
chr2	109890899	109890916	protein_coding	Ccdc34	intron	ENSMUSG00000027160	NonProperStrand	6	chr2	163057128	163057200	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-13.1465
chr12	43616351	43616441	LINE	L1Md_F2	L1	chr12L1Md_F243615851	ProperStrand	1	chr12	43616663	43616763	LINE	L1Md_F2	L1	chr12L1Md_F243616353	ProperStrand	1	1	-inf
chr18	61588763	61588788	LINE	L1MB5	L1	chr18L1MB561588683	NonProperStrand	4	chr17	39847919	39848009	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr10	46274604	46274704	LINE	L1MD	L1	chr10L1MD46274628	NonProperStrand	1	chr10	46275180	46275270	LTR	RLTR18B	ERVK	chr10RLTR18B46274818	ProperStrand	1	1	-inf
chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	67900783	67900879	protein_coding	1700040L02Rik	intron	ENSMUSG00000019945	ProperStrand	4	1	-3.7035
chr2	40088181	40088281	Other	RMER1C	Other	chr2RMER1C40087958	NonProperStrand	1	chr2	40088284	40088374	Simple_repeat	(TCC)n	Simple_repeat	chr2(TCC)n40088299	NonProperStrand	1	1	-inf
chr12	97895764	97895786	LINE	L1_Mm	L1	chr12L1_Mm97894344	NonProperStrand	1	chr3	138785310	138785436	LINE	Lx9	L1	chr3Lx9138785252	ProperStrand	1	1	-inf
chr9	40803993	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr3	89230481	89230497	protein_coding	Shc1	exon	ENSMUSG00000042626	ProperStrand	8	1	-11.5659
chr7	6640114	6640210	protein_coding	Zim1	intron	ENSMUSG00000002266	ProperStrand	65	chr17	6459811	6459866	protein_coding	Tmem181b-ps	exon	ENSMUSG00000079733	ProperStrand	49	3	-inf
chr14	18501032	18501108	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr1	178870211	178870297	protein_coding	Sdccag8	intron	ENSMUSG00000026504	ProperStrand	9	1	-13.8480
chr17	4082130	4082204	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr9	21795319	21795403	protein_coding	Ccdc151	exon	ENSMUSG00000039632	ProperStrand	87	1	-6.9221
chr17	39847552	39847672	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	10866584	10874452	protein_coding	Cd6	intron	ENSMUSG00000024670	ProperStrand	7	2	-4.7560
chr4	136727531	136727599	DNA	URR1B	MER1_type	chr4URR1B136727404	NonProperStrand	1	chr17	39847702	39847774	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	104912172	104912272	LINE	L1MA4A	L1	chr2L1MA4A104912111	NonProperStrand	1	chr2	104918495	104918585	antisense	AI314831	.	ENSMUSG00000074987	NonProperStrand	19	1	-inf
chr2	15806641	15806731	LINE	L1_Mm	L1	chr2L1_Mm15806561	ProperStrand	1	chr2	16312206	16312306	protein_coding	Plxdc2	intron	ENSMUSG00000026748	NonProperStrand	13	1	-inf
chr2	53083008	53083098	LINE	L1_Mur3	L1	chr2L1_Mur353081720	ProperStrand	2	chr2	53083473	53083574	LTR	RMER6C	ERVK	chr2RMER6C53083291	NonProperStrand	2	2	-inf
chr17	20959468	20960482	LTR	RMER17B	ERVK	chr17RMER17B20959125	NonProperStrand	1	chr9	123461959	123462014	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	41572985	41573023	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr8	110646731	110646830	LTR	MERVL-int	ERVL	chr8MERVL-int110641590	NonProperStrand	10	1	-14.9695
chr10	51711861	51711951	Low_complexity	GA-rich	Low_complexity	chr10GA-rich51711836	NonProperStrand	1	chr10	51711678	51711778	Simple_repeat	(GAAA)n	Simple_repeat	chr10(GAAA)n51711651	NonProperStrand	1	1	-inf
chr14	31252129	31252245	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr2	90395150	90395169	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-7.4519
chr12	57112141	57112159	SINE	B4A	B4	chr12B4A57111957	NonProperStrand	5	chr13	97190552	97190611	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.2290
chr1	169507202	169507292	LTR	MT2A	ERVL	chr1MT2A169507215	NonProperStrand	2	chr7	141451015	141451244	LTR	MT2A	ERVL	chr7MT2A141450778	NonProperStrand	38	2	-inf
chr5	114851974	114852030	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr9	15326454	15326490	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-9.4420
chr11	69141578	69141610	protein_coding-noncoding	Kcnab3	utr5	ENSMUSG00000018470	ProperStrand	1	chr11	69141786	69141856	protein_coding	Kcnab3	intron	ENSMUSG00000018470	ProperStrand	1	1	-inf
chr5	86111982	86112015	LINE	L1Md_T	L1	chr5L1Md_T86109057	ProperStrand	3	chr4	43492784	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-13.4464
chr1	151112392	151112410	LINE	L1Md_F2	L1	chr1L1Md_F2151111475	ProperStrand	1	chr17	39847511	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	27020374	27020412	lincRNA	Gm17382	intron	ENSMUSG00000078838	ProperStrand	3	chr12	78350873	78350922	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-12.2277
chr17	39847285	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	143003213	143003300	protein_coding	Papolb	utr3	ENSMUSG00000074817	ProperStrand	4	1	-4.8204
chr5	30060648	30060748	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr6	100620681	100620771	protein_coding	Shq1	intron	ENSMUSG00000035378	NonProperStrand	4	1	-23.3794
chr17	39848598	39848721	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	107751966	107751988	protein_coding	Scp2	intron	ENSMUSG00000028603	ProperStrand	2	1	-8.7208
chr11	78183089	78183123	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr13	44869948	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.6279
chr6	3201512	3201539	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	5903014	5903031	protein_coding	Upf2	intron	ENSMUSG00000043241	ProperStrand	9	1	-6.5801
chr4	137584026	137584042	protein_coding	Eif4g3	intron	ENSMUSG00000028760	NonProperStrand	48	chr9	58457529	58457661	protein_coding	Nptn	intron	ENSMUSG00000032336	ProperStrand	68	1	-12.2205
chr8	107675854	107675942	LTR	MER31A	ERV1	chr8MER31A107675822	NonProperStrand	1	chr6	3520230	3522262	protein_coding	Ccdc132	intron	ENSMUSG00000001376	ProperStrand	42	1	-inf
chr18	35271181	35271271	LTR	RMER19B	ERVK	chr18RMER19B35271161	ProperStrand	1	chr18	35271047	35271147	SINE	B2_Mm2	B2	chr18B2_Mm235271044	ProperStrand	1	1	-inf
chr17	39846586	39846616	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	98415410	98415450	protein_coding	Zpbp2	intron	ENSMUSG00000017195	ProperStrand	3	1	-4.3017
chr2	168176382	168176471	LTR	MTC	MaLR	chr2MTC168176361	NonProperStrand	3	chr2	168176275	168176375	SINE	B2_Mm2	B2	chr2B2_Mm2168176183	ProperStrand	3	3	-inf
chr3	135212641	135215111	protein_coding	Manba	intron	ENSMUSG00000028164	ProperStrand	20	chr7	141156998	141157019	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-12.0017
chr9	40803994	40804080	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr6	61330223	61330243	protein_coding	Fam190a	intron	ENSMUSG00000039578	NonProperStrand	37	1	-8.4080
chr2	115710582	115710614	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	chr6	51528997	51529041	protein_coding	Snx10	intron	ENSMUSG00000038301	ProperStrand	60	1	-10.1179
chr17	81039972	81040008	protein_coding	Map4k3	intron	ENSMUSG00000024242	ProperStrand	22	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.1106
chr15	96403366	96403385	protein_coding	Slc38a1	utr3	ENSMUSG00000023169	ProperStrand	51	chr18	84243145	84243238	protein_coding	Tshz1	intron	ENSMUSG00000046982	ProperStrand	86	1	-11.6261
chr9	96975061	96975118	LTR	RLTR11A2	ERVK	chr9RLTR11A296974777	ProperStrand	1	chr9	15315523	15315591	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-inf
chr17	39847636	39847693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	29562895	29565227	LTR	MTB	MaLR	chr6MTB29564408	NonProperStrand	1	1	-inf
chr5	146261301	146261355	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr17	56995929	56995994	protein_coding	Acsbg2	intron	ENSMUSG00000024207	NonProperStrand	7	1	-12.2954
chr14	110094387	110094477	LINE	Lx3_Mus	L1	chr14Lx3_Mus110094315	NonProperStrand	1	chr14	110094499	110094599	LINE	Lx9	L1	chr14Lx9110094524	NonProperStrand	1	1	-inf
chr5	134411693	134411763	SINE	B4	B4	chr5B4134411546	NonProperStrand	1	chr9	123462078	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847026	39847157	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	46404151	46404200	protein_coding	Tjap1	intron	ENSMUSG00000012296	NonProperStrand	8	3	-6.6838
chrX	138995933	138995949	LTR	MERVK26-int	ERVK	chrXMERVK26-int138993444	ProperStrand	1	chr7	24224487	24224512	protein_coding	Nlrp5	intron	ENSMUSG00000015721	NonProperStrand	13	1	-inf
chrX	144369747	144369764	LINE	L1Md_F2	L1	chrXL1Md_F2144364725	ProperStrand	5	chrX	144336386	144336448	SINE	RSINE1	B4	chrXRSINE1144336368	NonProperStrand	1	1	-inf
chr7	28351555	28351589	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	chr6	113336387	113337258	protein_coding	Arpc4	intron	ENSMUSG00000079426	NonProperStrand	8	1	-15.4585
chr2	121164590	121164655	protein_coding	Ppip5k1	intron	ENSMUSG00000033526	NonProperStrand	22	chr13	97190561	97190603	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.1106
chr17	57022531	57022615	protein_coding	1700061G19Rik	intron	ENSMUSG00000024209	NonProperStrand	83	chr7	133052424	133052499	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-4.5560
chr15	26380710	26380728	LINE	Lx7	L1	chr15Lx726380154	ProperStrand	4	chr17	39847437	39847460	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr6	142501410	142505454	LTR	MTD	MaLR	chr6MTD142501273	ProperStrand	8	chr6	142498601	142501362	LTR	MTEa-int	MaLR	chr6MTEa-int142498286	ProperStrand	3	1	-inf
chr2	177200310	177200410	LINE	L1_Mus1	L1	chr2L1_Mus1177197552	NonProperStrand	1	chr2	44861526	44861616	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	25	1	-inf
chr4	121198142	121198214	LINE	L1Md_F3	L1	chr4L1Md_F3121198064	ProperStrand	1	chr4	121197880	121197932	LTR	RMER17B	ERVK	chr4RMER17B121197602	NonProperStrand	1	1	-inf
chr2	71414361	71414461	SINE	B3A	B2	chr2B3A71414364	NonProperStrand	1	chr2	71414262	71414352	Simple_repeat	(GAGTG)n	Simple_repeat	chr2(GAGTG)n71414158	ProperStrand	9	1	-inf
chr17	33675175	33675283	protein_coding-noncoding	Adamts10	utr5	ENSMUSG00000024299	NonProperStrand	1	chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	1	-inf
chr12	102155573	102155663	protein_coding	Ccdc88c	intron	ENSMUSG00000021182	ProperStrand	3	chr12	102050677	102050777	protein_coding	9030617O03Rik	intron	ENSMUSG00000021185	NonProperStrand	4	1	-inf
chrX	74273017	74273103	LINE	L1Md_F2	L1	chrXL1Md_F274272821	ProperStrand	9	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-12.5125
chr16	36913056	36913146	protein_coding	Golgb1	exon	ENSMUSG00000034243	ProperStrand	83	chr17	44899003	44899034	protein_coding	Runx2	intron	ENSMUSG00000039153	NonProperStrand	33	1	-12.5785
chr13	43853225	43853325	SINE	B4A	B4	chr13B4A43853096	NonProperStrand	1	chr13	43852949	43853039	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n43852782	ProperStrand	1	1	-inf
chr18	52530007	52530036	LINE	Lx2B	L1	chr18Lx2B52529896	NonProperStrand	1	chr10	79858061	79858166	protein_coding	Mbd3	intron	ENSMUSG00000035478	NonProperStrand	98	1	-inf
chr11	75765086	75765176	SINE	B3	B2	chr11B375764946	NonProperStrand	2	chr11	75765201	75765301	SINE	ID4	ID	chr11ID475765228	ProperStrand	2	1	-19.8939
chr5	144000285	144000344	protein_coding	Zfp12	intron	ENSMUSG00000029587	NonProperStrand	6	chr15	72794321	72794371	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	1	-13.4382
chr12	3452517	3452583	protein_coding-noncoding	Asxl2	utr5	ENSMUSG00000037486	ProperStrand	3	chr12	3457255	3457311	protein_coding	Asxl2	intron	ENSMUSG00000037486	ProperStrand	73	1	-18.1248
chr12	102663445	102663505	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	chr9	56223578	56223610	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-4.3232
chr17	25230398	25230526	protein_coding	Ift140	intron	ENSMUSG00000024169	NonProperStrand	3	chr18	82677215	82677295	protein_coding	Mbp	intron	ENSMUSG00000041607	NonProperStrand	24	1	-20.7706
chr17	8184119	8184170	LTR	IAPEz-int	ERVK	chr17IAPEz-int8183393	NonProperStrand	3	chr14	3823951	3824049	protein_coding	Gm3002	intron	ENSMUSG00000079399	ProperStrand	51	1	-18.9239
chr17	39847277	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	27426319	27426335	SINE	B4A	B4	chr2B4A27426249	NonProperStrand	2	1	-6.5615
chr16	4538451	4538541	protein_coding	Srl	intron	ENSMUSG00000022519	NonProperStrand	25	chr6	125137836	125137936	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	78	1	-13.2684
chr18	32921246	32921264	lincRNA	4930455D15Rik	intron	ENSMUSG00000085056	ProperStrand	8	chr16	91504877	91505013	protein_coding	Ifnar1	intron	ENSMUSG00000022967	ProperStrand	11	1	-20.8373
chr17	39847327	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	29390497	29390544	LTR	MLT1D	MaLR	chr2MLT1D29390487	NonProperStrand	1	1	-inf
chr9	78479740	78479855	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr9	15326454	15326561	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-7.6448
chr14	121656686	121656704	protein_coding	Farp1	intron	ENSMUSG00000025555	ProperStrand	10	chr9	65201725	65201753	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	3	-21.7899
chr17	39848200	39848319	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr18	37935268	37935284	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	ProperStrand	20	1	-3.3703
chr9	123461958	123462028	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	33927149	33927230	protein_coding	Serpinb6e	intron	ENSMUSG00000069248	NonProperStrand	1	1	-inf
chr18	54378726	54378816	SINE	B3A	B2	chr18B3A54378697	NonProperStrand	1	chr18	54378579	54378679	SINE	B4	B4	chr18B454378558	NonProperStrand	1	1	-inf
chr1	87683748	87683848	LINE	L1Md_F2	L1	chr1L1Md_F287683183	NonProperStrand	4	chr1	87676354	87681562	SINE	B1_Mur4	Alu	chr1B1_Mur487677415	NonProperStrand	4	4	-inf
chr1	92132221	92132321	LTR	ORR1D2	MaLR	chr1ORR1D292132219	ProperStrand	7	chr1	92132337	92132427	LTR	ORR1D2	MaLR	chr1ORR1D292132337	ProperStrand	8	7	-inf
chr4	24343144	24343244	DNA	MER5A	MER1_type	chr4MER5A24343095	ProperStrand	1	chr4	24343254	24343344	Simple_repeat	(TAGA)n	Simple_repeat	chr4(TAGA)n24343252	NonProperStrand	1	1	-inf
chr18	34244130	34244230	LTR	IAPEz-int	ERVK	chr18IAPEz-int34243674	NonProperStrand	9	chr18	34242612	34242702	LTR	RMER10B	ERVL	chr18RMER10B34242572	ProperStrand	1	1	-inf
chr3	108434191	108435922	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	57	chr13	97190561	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.2220
chr13	30540631	30540720	SINE	B1_Mus1	Alu	chr13B1_Mus130540640	NonProperStrand	4	chr13	30540914	30540971	SINE	B3A	B2	chr13B3A30540811	ProperStrand	1	1	-inf
chr4	93557017	93557107	LINE	L1Md_T	L1	chr4L1Md_T93555876	ProperStrand	1	chr15	36132087	36132187	protein_coding	Spag1	intron	ENSMUSG00000037617	NonProperStrand	14	1	-inf
chr17	39847320	39847360	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	59864617	59864667	protein_coding	Gm17455	intron	ENSMUSG00000090439	ProperStrand	1	1	-inf
chr1	20806752	20806805	protein_coding	Mcm3	exon	ENSMUSG00000041859	ProperStrand	38	chr1	131573984	131574036	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-9.8852
chr13	63240371	63240509	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-6.7652
chr6	125101932	125102284	protein_coding-noncoding	Iffo1	utr5	ENSMUSG00000038271	ProperStrand	8	chr6	125101624	125102852	protein_coding	Iffo1	intron	ENSMUSG00000038271	ProperStrand	44	3	-inf
chr17	39846728	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	97984810	97985011	protein_coding	Asb8	intron	ENSMUSG00000048175	NonProperStrand	2	1	-5.3533
chr18	31760343	31760446	protein_coding	Slc25a46	intron	ENSMUSG00000024259	ProperStrand	4	chr9	123461991	123462029	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr2	164918494	164918515	SINE	B4	B4	chr2B4164918471	ProperStrand	3	chr5	111351341	111351458	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	3	-inf
chrX	37092363	37092436	LINE	L1Md_F2	L1	chrXL1Md_F237091782	NonProperStrand	3	chr17	39847927	39847956	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39847440	39847477	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	124999436	124999527	protein_coding-noncoding	Ing4	utr3	ENSMUSG00000030330	ProperStrand	2	1	-5.4040
chr2	92271934	92272042	lincRNA	D930015M05Rik	intron	ENSMUSG00000084781	ProperStrand	29	chr2	92273362	92273407	protein_coding	Cry2	intron	ENSMUSG00000068742	NonProperStrand	5	1	-18.6726
chr18	56438762	56438852	LINE	L1Md_F2	L1	chr18L1Md_F256432580	NonProperStrand	1	chr18	56438890	56438990	LTR	ORR1B1	MaLR	chr18ORR1B156438845	NonProperStrand	1	1	-inf
chr11	109011810	109011864	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	60538840	60538892	protein_coding	Flii	intron	ENSMUSG00000002812	NonProperStrand	22	1	-8.1069
chr2	121268366	121268436	protein_coding	Ell3	utr5	ENSMUSG00000027246	ProperStrand	1	chr1	183676752	183676769	protein_coding	Dnahc14	intron	ENSMUSG00000047369	NonProperStrand	2	1	-inf
chr13	49526849	49526891	protein_coding	Ippk	intron	ENSMUSG00000021385	NonProperStrand	66	chr5	121195653	121195679	protein_coding	Oas2	intron	ENSMUSG00000032690	NonProperStrand	3	1	-18.1951
chr17	39847174	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	66441025	66441056	Satellite	MMSAT4	Satellite	chr13MMSAT466440816	ProperStrand	2	1	-6.5615
chr17	39847340	39847379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	114698562	114698652	protein_coding-noncoding	Acacb	utr5	ENSMUSG00000042010	NonProperStrand	1	1	-inf
chr6	37414707	37414797	LINE	Lx8	L1	chr6Lx837414627	NonProperStrand	1	chr6	37414489	37414589	LTR	IAPLTR2_Mm	ERVK	chr6IAPLTR2_Mm37414145	NonProperStrand	1	1	-inf
chr10	36578122	36578141	LINE	Lx6	L1	chr10Lx636578110	ProperStrand	5	chr2	130276236	130276350	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	132	1	-15.6155
chr5	146260994	146261041	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	25471602	25471701	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	1	-5.4977
chr17	25589768	25589833	LTR	MLT1D	MaLR	chr17MLT1D25589600	NonProperStrand	2	chr17	25613066	25613141	protein_coding	Tekt4	intron	ENSMUSG00000024175	ProperStrand	7	1	-21.1088
chr16	97951273	97951365	LTR	RMER10A	ERVL	chr16RMER10A97951095	NonProperStrand	3	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr8	70594625	70594715	LINE	L1M4	L1	chr8L1M470594486	ProperStrand	3	chr8	70594711	70594885	LTR	MLT1B	MaLR	chr8MLT1B70594813	ProperStrand	1	1	-inf
chr12	77796848	77796867	protein_coding	Spnb1	intron	ENSMUSG00000021061	ProperStrand	5	chr5	142542449	142542589	protein_coding	Sdk1	intron	ENSMUSG00000039683	NonProperStrand	86	1	-16.4597
chr1	162838060	162838160	protein_coding	Rc3h1	intron	ENSMUSG00000040423	NonProperStrand	3	chr1	162856247	162856337	protein_coding	Rc3h1	intron	ENSMUSG00000040423	ProperStrand	2	1	-20.2824
chr9	70022573	70022643	lincRNA	Gm17406	intron	ENSMUSG00000091654	NonProperStrand	7	chr2	5379258	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.8922
chr17	66256976	66257066	SINE	B3	B2	chr17B366256947	ProperStrand	1	chr17	66257154	66257254	SINE	PB1D9	Alu	chr17PB1D966257179	ProperStrand	1	1	-inf
chr1	168334058	168334090	protein_coding	Pogk	intron	ENSMUSG00000040596	ProperStrand	7	chr5	65537290	65537312	protein_coding	Klhl5	intron	ENSMUSG00000054920	ProperStrand	40	1	-17.3174
chr4	127023266	127023294	SINE	B4A	B4	chr4B4A127023260	NonProperStrand	9	chr7	27957725	27957821	protein_coding	Rab4b	intron	ENSMUSG00000053291	ProperStrand	9	1	-20.8260
chr3	158463225	158463244	LINE	L1Md_F2	L1	chr3L1Md_F2158461384	ProperStrand	1	chr10	77508751	77508840	protein_coding	Dnmt3l	intron	ENSMUSG00000000730	NonProperStrand	39	1	-inf
chr4	130751526	130752677	SINE	B3A	B2	chr4B3A130752586	ProperStrand	6	chr4	130751434	130752599	SINE	B4A	B4	chr4B4A130751297	NonProperStrand	10	6	-inf
chr17	66119070	66119090	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	chr3	84948966	84949076	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-9.5950
chr9	123461873	123461963	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	83342531	83342630	protein_coding	Tet3	intron	ENSMUSG00000034832	NonProperStrand	13	1	-3.8693
chr17	36705498	36705588	LINE	L1Md_A	L1	chr17L1Md_A36703202	ProperStrand	1	chr17	36697637	36697737	pseudogene	Gm8868	.	ENSMUSG00000092332	ProperStrand	1	1	-inf
chr17	45568388	45568490	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr14	79012092	79012143	protein_coding	Dgkh	intron	ENSMUSG00000034731	NonProperStrand	61	1	-8.7664
chr11	69068810	69068855	LTR	RMER15	ERVL	chr11RMER1569068691	NonProperStrand	1	chr9	123462131	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	9801714	9801733	LINE	Lx8	L1	chr12Lx89801467	NonProperStrand	1	chr17	39847736	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	26846719	26846786	protein_coding	Smarca2	intron	ENSMUSG00000024921	ProperStrand	8	chr9	123462108	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-8.1879
chr11	109011809	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	21907106	21907193	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	1	-8.2014
chr16	91989033	91989062	LINE	L1MA6	L1	chr16L1MA691988938	ProperStrand	1	chr14	118965539	118965609	protein_coding	Abcc4	intron	ENSMUSG00000032849	ProperStrand	24	1	-inf
chr14	56966096	56966213	LINE	L1MA6	L1	chr14L1MA656965935	NonProperStrand	1	chr14	56966455	56966498	LTR	RMER4B	ERVK	chr14RMER4B56966335	NonProperStrand	2	1	-inf
chr2	130872944	130873022	SINE	B3A	B2	chr2B3A130872947	ProperStrand	6	chr13	109468264	109468314	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-12.7361
chr16	53932276	53932293	LINE	Lx3B	L1	chr16Lx3B53932009	NonProperStrand	1	chr13	112882843	112882957	LTR	RMER20B	ERVK	chr13RMER20B112882779	ProperStrand	1	1	-inf
chr1	38584001	38584055	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	chr13	37924654	37924718	protein_coding	Rreb1	intron	ENSMUSG00000039087	ProperStrand	91	1	-9.1453
chr9	59678799	59678858	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr15	73580866	73580934	protein_coding	Ptp4a3	intron	ENSMUSG00000059895	NonProperStrand	41	1	-7.0447
chr4	34592291	34592376	protein_coding	Rars2	intron	ENSMUSG00000028292	NonProperStrand	40	chr6	43336250	43336325	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	3	-inf
chr15	96687583	96687653	SINE	ID_B1	B4	chr15ID_B196687505	ProperStrand	2	chr5	113164507	113164592	protein_coding	Myo18b	intron	ENSMUSG00000072720	ProperStrand	234	1	-16.7337
chr2	120350749	120350849	protein_coding	Zfp106	intron	ENSMUSG00000027288	ProperStrand	14	chr16	11143905	11143995	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	1	-12.0290
chr8	31149864	31149951	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chrX	48572331	48572347	miRNA	AL671848.1	.	ENSMUSG00000093266	ProperStrand	1	1	-inf
chr2	38530822	38530878	processed_transcript	Gm13587	.	ENSMUSG00000087062	ProperStrand	12	chr2	38534947	38535005	pseudogene	Gpr144	.	ENSMUSG00000083722	ProperStrand	24	1	-17.1747
chr8	87737048	87737096	LTR	RMER16-int	ERVK	chr8RMER16-int87736915	ProperStrand	1	chr8	87738737	87738775	LTR	RMER16-int	ERVK	chr8RMER16-int87738124	ProperStrand	10	1	-inf
chr5	23667108	23667154	LINE	L1MB8	L1	chr5L1MB823667046	ProperStrand	1	chr17	39847244	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	146261268	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr1	82880087	82882281	protein_coding	Agfg1	intron	ENSMUSG00000026159	ProperStrand	65	1	-7.7177
chr13	74030308	74030335	LINE	L1M5	L1	chr13L1M574030313	NonProperStrand	1	chr10	70653731	70653748	LTR	MLT2D	ERVL	chr10MLT2D70653499	NonProperStrand	1	1	-inf
chr11	94481803	94481821	LTR	RMER16	ERVK	chr11RMER1694481668	ProperStrand	1	chr17	39847444	39847507	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	52659461	52659551	LINE	Lx	L1	chr16Lx52658780	NonProperStrand	1	chr16	52659813	52659913	LINE	Lx	L1	chr16Lx52659629	ProperStrand	1	1	-inf
chr2	91096727	91096827	protein_coding-noncoding	Pacsin3	utr5	ENSMUSG00000027257	ProperStrand	1	chr2	91096348	91096438	protein_coding	Pacsin3	utr5	ENSMUSG00000027257	ProperStrand	1	1	-inf
chr2	122011383	122011405	protein_coding	Patl2	intron	ENSMUSG00000027233	NonProperStrand	13	chr1	38508205	38508333	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	1	-13.0979
chr12	3285098	3285174	protein_coding	Rab10	intron	ENSMUSG00000020671	ProperStrand	66	chr8	61077726	61077792	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-9.4370
chr10	115206861	115206950	LTR	MLT2B4	ERVL	chr10MLT2B4115206785	ProperStrand	1	chr17	39846921	39846970	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	73545081	73545171	LTR	ORR1D1-int	MaLR	chr8ORR1D1-int73545019	ProperStrand	1	chr8	73544749	73544849	SINE	B1_Mur4	Alu	chr8B1_Mur473544725	ProperStrand	1	1	-inf
chr14	78926074	78926124	protein_coding	Akap11	intron	ENSMUSG00000022016	NonProperStrand	27	chr1	125424858	125424920	protein_coding	Dpp10	intron	ENSMUSG00000036815	ProperStrand	52	1	-13.9275
chr15	44427740	44427765	protein_coding	Pkhd1l1	intron	ENSMUSG00000038725	NonProperStrand	20	chr19	47373417	47392430	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	ProperStrand	170	1	-12.1607
chr1	63164769	63164833	lincRNA	Gm11602	intron	ENSMUSG00000084799	NonProperStrand	13	chr5	115489528	115489602	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-12.2703
chr9	103689426	103689488	LINE	L1MA8	L1	chr9L1MA8103689254	NonProperStrand	2	chr5	34228723	34228756	protein_coding	Whsc1	intron	ENSMUSG00000057406	NonProperStrand	47	1	-20.1013
chr11	102568005	102568068	LTR	ORR1A2	MaLR	chr11ORR1A2102567754	ProperStrand	37	chr6	31112537	31112576	SINE	B4A	B4	chr6B4A31112461	ProperStrand	2	2	-inf
chr12	54324341	54324410	LINE	L1ME3A	L1	chr12L1ME3A54324153	NonProperStrand	1	chr17	39847990	39848036	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	22956597	22982083	LINE	L1MD	L1	chr11L1MD22956594	ProperStrand	8	chr11	22982141	22982231	SINE	B3	B2	chr11B322982073	NonProperStrand	4	4	-inf
chr6	74451796	74451823	LINE	MusHAL1	L1	chr6MusHAL174451742	NonProperStrand	1	chr5	122817842	122817859	protein_coding	1500011H22Rik	intron	ENSMUSG00000029463	ProperStrand	18	1	-inf
chr11	62604511	62604587	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr2	84841772	84841793	protein_coding	P2rx3	intron	ENSMUSG00000027071	NonProperStrand	14	1	-15.8087
chr1	56673338	56673438	LINE	Lx7	L1	chr1Lx756671602	NonProperStrand	2	chr1	56654433	56654523	SINE	B4	B4	chr1B456654441	ProperStrand	1	1	-inf
chr4	155586069	155586169	SINE	B1_Mur1	Alu	chr4B1_Mur1155586094	NonProperStrand	4	chr4	155585964	155586054	SINE	B1_Mus1	Alu	chr4B1_Mus1155585921	ProperStrand	4	4	-inf
chr2	111944992	111945092	LINE	Lx2	L1	chr2Lx2111944245	NonProperStrand	1	chr2	111945410	111945500	LINE	Lx2	L1	chr2Lx2111945378	NonProperStrand	1	1	-inf
chr15	75711132	75711594	LTR	ORR1A4-int	MaLR	chr15ORR1A4-int75710091	NonProperStrand	1	chr15	75711577	75711677	LTR	RLTR20B3	ERVK	chr15RLTR20B375711193	ProperStrand	1	1	-inf
chr12	23183450	23183540	LINE	L1Md_T	L1	chr12L1Md_T23180525	ProperStrand	6	chr12	22024343	22024443	pseudogene	Gm9282	.	ENSMUSG00000092226	ProperStrand	10	4	-inf
chr7	98903561	98903651	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	chr1	159334591	159334614	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	57	1	-7.5285
chr10	40258511	40258611	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr9	48176996	48177086	protein_coding	Fam55d	intron	ENSMUSG00000044229	ProperStrand	43	1	-6.0107
chr8	83576022	83576075	LINE	Lx3_Mus	L1	chr8Lx3_Mus83575047	ProperStrand	7	chr14	63508331	63508442	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	1	-14.6795
chr4	116386674	116386774	protein_coding	Ccdc163	intron	ENSMUSG00000028689	NonProperStrand	7	chr12	67661129	67661219	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-15.8928
chr5	123745033	123745108	antisense	Gm15857	.	ENSMUSG00000087063	ProperStrand	7	chr5	123740675	123740735	protein_coding	Wdr66	intron	ENSMUSG00000029442	NonProperStrand	48	1	-16.8929
chr14	100201069	100201158	LINE	L1_Mur3	L1	chr14L1_Mur3100199352	NonProperStrand	6	chr9	118674951	118674999	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.6975
chr17	39845503	39845550	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	92542410	92542463	LTR	IAPLTR1a_Mm	ERVK	chr9IAPLTR1a_Mm92542208	NonProperStrand	10	1	-5.6150
chr1	132720630	132720720	LTR	MLT1C	MaLR	chr1MLT1C132720407	NonProperStrand	1	chr1	132720564	132720664	antisense	Gm15848	.	ENSMUSG00000086706	ProperStrand	15	1	-inf
chr8	53370479	53370579	LINE	L1Md_T	L1	chr8L1Md_T53370310	NonProperStrand	1	chr8	53370205	53370295	LINE	L1_Rod	L1	chr8L1_Rod53369322	NonProperStrand	1	1	-inf
chr17	56623221	56623242	Simple_repeat	(TGGA)n	Simple_repeat	chr17(TGGA)n56623078	NonProperStrand	2	chr9	123461956	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	3204689	3204779	LINE	L1Md_F2	L1	chr13L1Md_F23204641	ProperStrand	1	chr13	3204476	3204576	LINE	L1_Mur2	L1	chr13L1_Mur23204464	NonProperStrand	1	1	-inf
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr9	123461802	123461903	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr9	123461802	123462171	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	9	-8.3950
chr2	163781384	163781402	SINE	B2_Mm2	B2	chr2B2_Mm2163781345	ProperStrand	1	chr15	85177749	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-inf
chr2	126541669	126541759	protein_coding	Usp50	intron	ENSMUSG00000027364	ProperStrand	3	chr2	126280542	126280642	protein_coding	Atp8b4	intron	ENSMUSG00000060131	ProperStrand	7	1	-25.2264
chr1	119547891	119547996	LINE	L1_Mus1	L1	chr1L1_Mus1119547551	NonProperStrand	3	mmu-miR-291a-3p	0	22	miRNA	mmu-miR-291a-3p	.	mmu-miR-291a-3p	ProperStrand	3	1	-20.2168
chr11	109011650	109011704	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	93461491	93463363	protein_coding	Vsig4	intron	ENSMUSG00000044206	ProperStrand	22	1	-8.1069
chr10	28229730	28229790	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	chr8	123024685	123024762	protein_coding	Gse1	intron	ENSMUSG00000031822	NonProperStrand	68	1	-9.9186
chr17	39847160	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	59236874	59236896	protein_coding	Als2	intron	ENSMUSG00000026024	ProperStrand	8	1	-3.3803
chr7	19556874	19556946	SINE	B4A	B4	chr7B4A19556856	ProperStrand	1	chr7	19556592	19556630	Simple_repeat	(TTCC)n	Simple_repeat	chr7(TTCC)n19556589	NonProperStrand	1	1	-inf
chr8	104360350	104360418	LINE	Lx6	L1	chr8Lx6104359955	NonProperStrand	6	chr9	123462102	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr15	85177752	85177784	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr1	188985008	188985126	protein_coding	Spata17	intron	ENSMUSG00000026611	ProperStrand	80	1	-8.7269
chr6	43336250	43336321	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	chr13	77951993	77952074	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-12.6406
chr2	53145232	53145278	LINE	L1VL4	L1	chr2L1VL453145206	NonProperStrand	2	chr17	39846833	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39847173	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	68766631	69158088	protein_coding	Rora	intron	ENSMUSG00000032238	NonProperStrand	32	3	-3.4720
chr8	106189079	106189154	Low_complexity	CT-rich	Low_complexity	chr8CT-rich106189024	ProperStrand	2	chr3	34046658	34046743	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	1	-18.1407
chr6	21151766	21151856	LTR	MER68	ERVL	chr6MER6821151674	ProperStrand	1	chr6	21151368	21151468	LTR	RLTR44C	ERVK	chr6RLTR44C21151004	ProperStrand	1	1	-inf
chr4	132860147	132860204	protein_coding	Wdtc1	intron	ENSMUSG00000037622	ProperStrand	33	chr3	96631714	96631736	protein_coding	Cd160	intron	ENSMUSG00000038304	NonProperStrand	11	1	-16.7373
chr2	39123004	39125103	LINE	L1Md_F2	L1	chr2L1Md_F239117841	ProperStrand	2	chr2	39125170	39133029	LINE	L1Md_F2	L1	chr2L1Md_F239131529	ProperStrand	4	2	-inf
chr2	20372679	20372698	protein_coding	Etl4	intron	ENSMUSG00000036617	NonProperStrand	26	chr2	5379242	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.1854
chr7	19733070	19733170	protein_coding	Qpctl	intron	ENSMUSG00000030407	ProperStrand	8	chr7	19733185	19738075	protein_coding	Snrpd2	utr3	ENSMUSG00000040824	NonProperStrand	3	2	-inf
chr4	83329338	83329376	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	chrX	20627227	20627334	protein_coding	Zfp182	intron	ENSMUSG00000054737	NonProperStrand	10	2	-27.0865
chr1	77504651	77504760	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	chr14	55567346	55567396	protein_coding	Myh6	intron	ENSMUSG00000040752	NonProperStrand	12	2	-19.2028
chr12	102636942	102637042	LINE	L1Md_F3	L1	chr12L1Md_F3102635527	NonProperStrand	4	chr14	103080806	103080896	LINE	L1_Mur2	L1	chr14L1_Mur2103080274	NonProperStrand	2	1	-20.9262
chr8	77466669	77466720	SINE	B1_Mus2	Alu	chr8B1_Mus277466577	NonProperStrand	1	chr11	45872067	45872128	protein_coding	Adam19	intron	ENSMUSG00000011256	ProperStrand	66	1	-inf
chr4	44756622	44756694	LINE	L1MA4	L1	chr4L1MA444756607	ProperStrand	1	chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	73915232	73915258	LINE	L1_Mus1	L1	chrXL1_Mus173915100	ProperStrand	1	chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-inf
chr17	39846414	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	134473441	134473494	SINE	B1_Mm	Alu	chr4B1_Mm134473450	NonProperStrand	4	1	-3.6552
chr13	6595022	6595063	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr7	82777662	82777782	protein_coding	Akap13	intron	ENSMUSG00000066406	ProperStrand	108	1	-9.5361
chr8	122570277	122570308	protein_coding	Crispld2	intron	ENSMUSG00000031825	ProperStrand	44	chr15	86194986	86195027	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-9.4162
chr1	133137387	133137449	protein_coding	Rassf5	intron	ENSMUSG00000026430	NonProperStrand	55	chr2	130277695	130277767	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	1	-10.6145
chr11	50186491	50186522	SINE	B1F	Alu	chr11B1F50186467	ProperStrand	1	chr11	50184129	50184176	SINE	B3	B2	chr11B350184047	ProperStrand	1	1	-inf
chr2	137515133	137515223	lincRNA	Gm14064	intron	ENSMUSG00000085640	ProperStrand	6	chr2	141348621	141348721	protein_coding	Macrod2	intron	ENSMUSG00000068205	NonProperStrand	53	1	-17.0058
chr1	89639465	89639510	LTR	MERVL-int	ERVL	chr1MERVL-int89638707	NonProperStrand	22	chr1	89636846	89636931	SINE	B4A	B4	chr1B4A89636841	NonProperStrand	1	1	-inf
chr2	29772134	29772217	protein_coding-noncoding	Odf2	utr5	ENSMUSG00000026790	NonProperStrand	12	chr9	59396832	59396871	protein_coding	Hexa	intron	ENSMUSG00000025232	NonProperStrand	14	1	-18.1332
chr9	40804348	40804483	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr4	11338579	11338638	protein_coding	Gm17283	intron	ENSMUSG00000067549	NonProperStrand	60	1	-7.4395
chr2	32281747	32287617	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	chr17	66498371	66498445	protein_coding	Ddx11	exon	ENSMUSG00000035842	NonProperStrand	19	1	-15.4482
chr17	39848008	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	44407703	44408003	SINE	B3	B2	chr9B344407598	ProperStrand	1	1	-inf
chr3	104911993	104912053	LINE	L1Md_A	L1	chr3L1Md_A104911968	NonProperStrand	1	chr7	141448769	141451077	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	188	1	-inf
chr6	122318025	122318125	LTR	ORR1E	MaLR	chr6ORR1E122317985	NonProperStrand	5	chr6	122318184	122318274	SINE	PB1	Alu	chr6PB1122318153	ProperStrand	3	3	-inf
chr18	27869663	27869763	LINE	Lx3_Mus	L1	chr18Lx3_Mus27868772	ProperStrand	1	chr18	27869985	27870075	LINE	Lx3_Mus	L1	chr18Lx3_Mus27869806	NonProperStrand	1	1	-inf
chr10	115828888	115828978	LINE	Lx2	L1	chr10Lx2115828629	NonProperStrand	1	chr17	39847248	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39847442	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	157312541	157312589	SINE	B3	B2	chr2B3157312449	NonProperStrand	1	1	-inf
chr13	19102879	19102897	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	chr13	44869601	44869712	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.9107
chr8	31149862	31149903	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.0194
chr4	123534499	123534581	antisense	1700121C08Rik	.	ENSMUSG00000086275	ProperStrand	23	chr13	44869944	44870016	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.3731
chr18	6211086	6211217	protein_coding	Kif5b	exon	ENSMUSG00000006740	ProperStrand	37	chr3	144508410	144508492	protein_coding	Clca4	intron	ENSMUSG00000037033	ProperStrand	58	1	-13.0680
chr3	131635748	131635838	LTR	ORR1E-int	MaLR	chr3ORR1E-int131635643	NonProperStrand	2	chr16	30965341	30965441	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	1	-16.1956
chr19	5799325	5799432	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr2	146883134	146883164	protein_coding	Xrn2	intron	ENSMUSG00000027433	ProperStrand	27	1	-5.9978
chr4	133871237	133871337	protein_coding	Trim63	intron	ENSMUSG00000028834	NonProperStrand	16	chr2	5379250	5379340	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.1646
chr4	119277440	119277516	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	chr6	83975127	83975193	protein_coding	Dysf	intron	ENSMUSG00000033788	ProperStrand	55	1	-10.7889
chr11	104424951	104425006	processed_transcript	Gm11665	.	ENSMUSG00000086932	ProperStrand	17	chr9	108048273	108048289	protein_coding	Bsn	intron	ENSMUSG00000032589	ProperStrand	35	1	-15.6759
chr6	119678282	119678372	protein_coding	Erc1	intron	ENSMUSG00000030172	ProperStrand	98	chr18	64505279	64507772	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	1	-12.2446
chr12	79067702	79067730	LTR	RLTR45	ERVK	chr12RLTR4579067511	NonProperStrand	1	chr11	116215187	116215265	protein_coding-noncoding	Rnf157	utr3	ENSMUSG00000052949	NonProperStrand	2	1	-inf
chr5	110775422	110775522	SINE	B3	B2	chr5B3110775414	ProperStrand	1	chr5	110775817	110775907	SINE	ID4_	ID	chr5ID4_110775837	ProperStrand	1	1	-inf
chr6	15781947	15782013	LINE	Lx6	L1	chr6Lx615781762	ProperStrand	1	chr6	12015034	12015090	protein_coding	Phf14	intron	ENSMUSG00000029629	ProperStrand	37	1	-inf
chrX	77628386	77628432	LINE	L1Md_A	L1	chrXL1Md_A77624118	ProperStrand	3	chr4	133659518	133659593	protein_coding	Ubxn11	intron	ENSMUSG00000012126	NonProperStrand	37	1	-19.4598
chr1	149574694	149574784	LINE	Lx9	L1	chr1Lx9149574695	NonProperStrand	1	chr1	149574471	149574571	LTR	IAPLTR2b	ERVK	chr1IAPLTR2b149574347	NonProperStrand	1	1	-inf
chr13	93540778	93540878	protein_coding	Thbs4	intron	ENSMUSG00000021702	ProperStrand	2	chr13	92197474	92197564	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	103	1	-18.2318
chr13	112578197	112578269	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr7	97313723	97313805	protein_coding	Picalm	intron	ENSMUSG00000039361	NonProperStrand	35	1	-5.2458
chr5	33660570	33660660	LTR	ORR1A1	MaLR	chr5ORR1A133660564	ProperStrand	1	chr5	33660666	33660766	SINE	B1_Mus1	Alu	chr5B1_Mus133660648	ProperStrand	1	1	-inf
chr7	131577633	131577684	LINE	L1_Mus4	L1	chr7L1_Mus4131577556	NonProperStrand	3	chr7	131576632	131576693	LTR	RMER19B	ERVK	chr7RMER19B131575884	NonProperStrand	1	1	-inf
chr5	131965284	131965325	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr12	110695199	110695270	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-4.4533
chr11	22608472	22608545	LTR	RMER13A	ERVK	chr11RMER13A22608066	NonProperStrand	1	chr17	44800648	44800666	protein_coding	Runx2	intron	ENSMUSG00000039153	NonProperStrand	33	1	-inf
chr17	39848163	39848198	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	129533023	129533145	protein_coding	Gar1	intron	ENSMUSG00000028010	NonProperStrand	22	1	-3.1941
chr16	18926697	18926725	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-5.3810
chr12	78350926	78351022	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	35981624	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-3.8514
chr9	109999801	110026162	SINE	RSINE1	B4	chr9RSINE1110002563	ProperStrand	4	chr9	109979036	109999806	protein_coding	Mtap4	intron	ENSMUSG00000032479	ProperStrand	91	3	-inf
chr17	21866777	21866846	LINE	L1MA8	L1	chr17L1MA821866703	NonProperStrand	1	chr17	39847037	39847116	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847440	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	46451225	46451266	SINE	B1_Mur2	Alu	chr4B1_Mur246451209	ProperStrand	1	1	-inf
chr17	4082827	4082927	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr3	67160802	67160892	protein_coding	Rsrc1	utr3	ENSMUSG00000034544	ProperStrand	37	2	-18.8315
chr6	12815608	12815698	LINE	L1M4	L1	chr6L1M412815565	NonProperStrand	1	chr6	12815361	12815461	SINE	B3	B2	chr6B312815311	ProperStrand	1	1	-inf
chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	chr7	127028138	127028244	protein_coding	Dcun1d3	intron	ENSMUSG00000048787	ProperStrand	118	1	-11.1561
chr17	39846418	39846490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	110700901	110700963	protein_coding	Prss42	intron	ENSMUSG00000044664	ProperStrand	5	1	-3.1907
chr11	68023186	68068192	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	4	-7.6357
chr17	24158855	24158987	Other	RMER1B	Other	chr17RMER1B24158429	ProperStrand	4	chr2	32303695	32303712	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	1	-18.9655
chr19	42120152	42120242	protein_coding-noncoding	Hoga1	utr5	ENSMUSG00000025176	ProperStrand	1	chr19	42120236	42120336	protein_coding	Hoga1	utr5	ENSMUSG00000025176	ProperStrand	14	1	-inf
chr3	19226606	19226622	SINE	B2_Mm1a	B2	chr3B2_Mm1a19226464	ProperStrand	1	chr2	126892882	126892951	protein_coding	Ap4e1	utr3	ENSMUSG00000001998	NonProperStrand	29	1	-inf
chr18	64037113	64037213	protein_coding	Wdr7	intron	ENSMUSG00000040560	ProperStrand	39	chr14	33967699	33967789	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-11.6739
chr17	25473256	25473320	LTR	MTE2b	MaLR	chr17MTE2b25473005	NonProperStrand	1	chr16	32069577	32069660	protein_coding	Pak2	intron	ENSMUSG00000022781	ProperStrand	40	1	-inf
chr5	129505437	129505558	protein_coding	Stx2	utr5	ENSMUSG00000029428	NonProperStrand	19	chr11	82767495	82767528	protein_coding	Slfn5	intron	ENSMUSG00000054404	ProperStrand	13	1	-17.5680
chr14	11812745	11812835	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	chr14	3458941	3459042	protein_coding	Gm1973	intron	ENSMUSG00000079406	ProperStrand	1	1	-inf
chr7	29369941	29369997	protein_coding	Pak4	intron	ENSMUSG00000030602	ProperStrand	17	chr10	86346330	86346397	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	81	1	-13.9806
chr2	92600121	92600139	LTR	RMER16	ERVK	chr2RMER1692599968	ProperStrand	2	chr13	44869601	44869664	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr17	79547900	79548000	LINE	L2a	L2	chr17L2a79547905	NonProperStrand	1	chr17	68095645	68095735	protein_coding	Lama1	intron	ENSMUSG00000032796	ProperStrand	3	1	-inf
chr10	79063200	79063251	LTR	MTE-int	MaLR	chr10MTE-int79062596	ProperStrand	2	chrX	136214245	136214324	LTR	ORR1A4-int	MaLR	chrXORR1A4-int136214253	NonProperStrand	17	1	-20.8675
chr1	170787246	170787291	LINE	L1Md_T	L1	chr1L1Md_T170783598	ProperStrand	2	chr17	39846941	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr9	17504077	17504126	LINE	Lx2B	L1	chr9Lx2B17504010	NonProperStrand	1	chr1	72255081	72255195	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-inf
chr16	3755327	3755427	LTR	ORR1A2-int	MaLR	chr16ORR1A2-int3754777	NonProperStrand	1	chr9	123461933	123461984	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	55023758	55023858	LTR	RMER19B	ERVK	chr1RMER19B55023616	NonProperStrand	1	chr1	55023472	55023562	SINE	PB1D10	Alu	chr1PB1D1055023487	NonProperStrand	1	1	-inf
chr5	114174646	114174715	protein_coding	1700069L16Rik	utr5	ENSMUSG00000042184	ProperStrand	1	chr7	30961877	30961924	protein_coding	Gm5113	intron	ENSMUSG00000066647	NonProperStrand	18	1	-inf
chr17	39847188	39847280	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	133034363	133034405	protein_coding	Dyrk3	intron	ENSMUSG00000016526	ProperStrand	5	1	-4.3348
chr18	24782000	24782040	protein_coding	Elp2	intron	ENSMUSG00000024271	ProperStrand	44	chr2	71344715	71344765	protein_coding	Metap1d	intron	ENSMUSG00000041921	NonProperStrand	21	1	-14.7737
chr16	20208256	20208346	protein_coding	Yeats2	intron	ENSMUSG00000041215	NonProperStrand	3	chr16	20204347	20204447	protein_coding	Yeats2	intron	ENSMUSG00000041215	ProperStrand	71	1	-18.1712
chr17	39843854	39843905	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr18	9963321	9963382	protein_coding	Thoc1	intron	ENSMUSG00000024287	ProperStrand	14	1	-5.7669
chr1	38210184	38210284	DNA	MER45B	Tip100	chr1MER45B38210115	ProperStrand	1	chr1	38210403	38210493	SINE	B2_Mm1a	B2	chr1B2_Mm1a38210356	NonProperStrand	1	1	-inf
chr4	19207990	19208090	protein_coding	Cngb3	utr5	ENSMUSG00000056494	NonProperStrand	5	chr3	41484109	41484199	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	1	-14.4482
chr17	39847183	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	72618173	72618189	lincRNA	Atp10d	intron	ENSMUSG00000046808	NonProperStrand	11	2	-4.9635
chr17	39846822	39847729	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	16416810	16416848	SINE	PB1D10	Alu	chr7PB1D1016416793	NonProperStrand	5	1	-3.1907
chr4	141018847	141018914	protein_coding	Zbtb17	intron	ENSMUSG00000006215	NonProperStrand	16	chr8	83932629	83932873	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	2	-14.6272
chr6	6074232	6074309	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr4	53860733	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-6.8569
chr17	39848555	39848645	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	29642534	29642634	protein_coding	Lmbr1	intron	ENSMUSG00000010721	NonProperStrand	89	3	-3.5897
chr3	3194391	3194491	LTR	RLTR45-int	ERVK	chr3RLTR45-int3194333	NonProperStrand	1	chr3	3194567	3194657	SINE	B2_Mm1a	B2	chr3B2_Mm1a3194474	NonProperStrand	1	1	-inf
chr12	87152377	87152413	protein_coding	Mfsd7c	intron	ENSMUSG00000034258	ProperStrand	18	chr13	44869611	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.8673
chr10	40258505	40258580	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	93955515	93955580	protein_coding	Spag9	intron	ENSMUSG00000020859	NonProperStrand	74	1	-4.9496
chr15	82971646	82971680	protein_coding	Poldip3	intron	ENSMUSG00000041815	ProperStrand	9	chr13	100000740	100000794	protein_coding	Zfp366	intron	ENSMUSG00000050919	NonProperStrand	32	1	-17.1311
chr5	85648979	85649079	LINE	L1_Mus1	L1	chr5L1_Mus185648977	NonProperStrand	1	chr5	85648795	85648885	SINE	PB1D7	Alu	chr5PB1D785648780	NonProperStrand	1	1	-inf
chr9	62507413	62507503	LTR	MTA_Mm	MaLR	chr9MTA_Mm62507419	NonProperStrand	1	chr9	62507301	62507401	Simple_repeat	(GGAA)n	Simple_repeat	chr9(GGAA)n62507318	NonProperStrand	1	1	-inf
chr4	150436291	150436352	protein_coding	Camta1	utr3	ENSMUSG00000014592	NonProperStrand	401	chr4	150431796	150431847	protein_coding	Vamp3	intron	ENSMUSG00000028955	NonProperStrand	2	1	-15.6803
chr12	33188109	33188192	LINE	L1Md_F2	L1	chr12L1Md_F233188007	NonProperStrand	1	chr17	39847613	39847636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	24518725	24518743	protein_coding	Asb15	intron	ENSMUSG00000029685	NonProperStrand	2	chr2	5379271	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr1	180193347	180193468	LINE	L1VL4	L1	chr1L1VL4180191785	NonProperStrand	1	chr9	123461835	123461873	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	134144864	134144964	protein_coding	Man1c1	intron	ENSMUSG00000037306	ProperStrand	70	chr7	141259238	141259328	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	2	-14.9784
chr8	71961592	71961662	LINE	L1_Mus4	L1	chr8L1_Mus471960740	ProperStrand	1	chr17	39848099	39848142	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr7	65884276	65884358	LINE	L1MA5A	L1	chr7L1MA5A65884018	ProperStrand	1	chr9	118544142	118544193	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-inf
chr19	7684194	7684294	LTR	RLTR18B	ERVK	chr19RLTR18B7684066	NonProperStrand	1	chr19	7683892	7683982	SINE	B2_Mm2	B2	chr19B2_Mm27683865	ProperStrand	1	1	-inf
chr5	86141620	86144360	LINE	L1_Mur2	L1	chr5L1_Mur286141294	NonProperStrand	1	chr5	86144442	86147128	LINE	Lx5	L1	chr5Lx586147060	NonProperStrand	1	1	-inf
chr5	115994086	116002357	protein_coding-noncoding	Pxn	utr5	ENSMUSG00000029528	ProperStrand	10	chr5	115994310	116002275	protein_coding	Pxn	exon	ENSMUSG00000029528	ProperStrand	36	2	-inf
chr9	56341048	56341089	protein_coding	Hmg20a	intron	ENSMUSG00000032329	NonProperStrand	29	chr4	108407622	108407689	protein_coding	Zfyve9	intron	ENSMUSG00000034557	NonProperStrand	18	1	-15.9381
chr2	52110944	52111074	protein_coding	Neb	utr5	ENSMUSG00000026950	NonProperStrand	137	chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	1	-11.6346
chr17	4082172	4082217	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	156152925	156152980	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	NonProperStrand	55	1	-7.8349
chr5	92980412	92980512	LTR	RLTR6_Mm	ERV1	chr5RLTR6_Mm92980221	NonProperStrand	2	chr5	92952311	92952401	SINE	B2_Mm2	B2	chr5B2_Mm292952319	NonProperStrand	2	2	-inf
chr9	118674951	118674983	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr6	120909777	120909841	protein_coding	Mical3	exon	ENSMUSG00000051586	ProperStrand	65	1	-5.8135
chr17	39845124	39845198	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chrX	73642579	73642643	protein_coding	4930428D18Rik	exon	ENSMUSG00000073085	ProperStrand	12	3	-12.6006
chr6	22535298	22535388	LINE	L1_Mur3	L1	chr6L1_Mur322535108	ProperStrand	1	chr6	22534947	22535047	LTR	RLTR9E	ERVK	chr6RLTR9E22534916	NonProperStrand	1	1	-inf
chr12	73965130	73965147	LINE	L1M3	L1	chr12L1M373964954	ProperStrand	1	chr17	39847195	39847289	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	34546897	34546987	protein_coding	Gapvd1	intron	ENSMUSG00000026867	NonProperStrand	127	chr2	160632706	160632806	protein_coding	Zhx3	intron	ENSMUSG00000035877	ProperStrand	62	1	-10.4509
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	3656100	3656847	protein_coding-noncoding	Rps9	utr5	ENSMUSG00000006333	ProperStrand	5	2	-5.8332
chr14	47407764	47407801	protein_coding	Cnih	intron	ENSMUSG00000015759	ProperStrand	19	chr9	123461822	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.1531
chr7	92658548	92658638	LINE	Lx5	L1	chr7Lx592657888	NonProperStrand	9	chr9	86721313	86721413	protein_coding	Snap91	intron	ENSMUSG00000033419	ProperStrand	34	1	-17.0674
chr17	50920581	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr4	11240404	11240507	protein_coding	Dpy19l4	intron	ENSMUSG00000045205	ProperStrand	21	1	-14.4029
chr8	111816379	111816463	LINE	L1Md_F3	L1	chr8L1Md_F3111816267	ProperStrand	5	chr17	39846472	39846503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr14	118522431	118522529	protein_coding	Tgds	intron	ENSMUSG00000022130	ProperStrand	13	chr1	136364891	136364950	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-13.4976
chr11	15052489	15052589	LINE	L1VL4	L1	chr11L1VL415052479	NonProperStrand	1	chr11	15052282	15052372	LINE	L1_Mus3	L1	chr11L1_Mus315051927	NonProperStrand	1	1	-inf
chr12	21335829	21349937	protein_coding-noncoding	Adam17	utr3	ENSMUSG00000052593	ProperStrand	4	chr12	21335987	21349809	protein_coding	Adam17	intron	ENSMUSG00000052593	ProperStrand	16	4	-inf
chr14	120498189	120498248	LINE	L1_Mur3	L1	chr14L1_Mur3120497213	NonProperStrand	1	chr17	39847159	39847228	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	12886347	12886387	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	chr6	90733003	90733053	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	1	-6.2183
chr12	110502604	110502622	LINE	L1Md_F	L1	chr12L1Md_F110500000	ProperStrand	1	chr13	97190568	97190629	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr5	115579822	115580521	protein_coding-noncoding	Unc119b	utr3	ENSMUSG00000046562	NonProperStrand	2	chr5	115580544	115581067	protein_coding	Unc119b	intron	ENSMUSG00000046562	NonProperStrand	14	2	-inf
chr17	39848486	39848539	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	110279171	110279333	protein_coding	Map2k6	intron	ENSMUSG00000020623	NonProperStrand	3	1	-7.6307
chr2	34459258	34459312	protein_coding	Mapkap1	intron	ENSMUSG00000038696	ProperStrand	60	chr10	13008938	13009008	protein_coding	Phactr2	intron	ENSMUSG00000062866	NonProperStrand	49	1	-12.4317
chr17	39846331	39846379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	89143847	89143894	SINE	B1_Mm	Alu	chr1B1_Mm89143813	ProperStrand	3	1	-4.3017
chr17	39843415	39843449	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	65919336	65919398	Simple_repeat	(GAGAA)n	Simple_repeat	chr9(GAGAA)n65919314	ProperStrand	1	1	-inf
chrX	151859523	151859585	LINE	Lx7	L1	chrXLx7151859533	ProperStrand	8	chr9	40803993	40804065	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-11.5659
chr5	34790806	34790844	protein_coding	Fam193a	intron	ENSMUSG00000037210	ProperStrand	38	chr9	106690911	106690961	protein_coding	Rad54l2	intron	ENSMUSG00000040661	ProperStrand	29	1	-14.4175
chr1	167356309	167356375	protein_coding	Dcaf6	intron	ENSMUSG00000026571	NonProperStrand	57	chr5	131963146	131963202	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-7.3098
chr17	39847847	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	122475726	122475743	SINE	PB1D10	Alu	chr14PB1D10122475644	NonProperStrand	1	1	-inf
chr2	128636692	128636810	SINE	ID_B1	B4	chr2ID_B1128636602	NonProperStrand	1	chr5	17776752	17776786	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-inf
chr4	134004030	134004097	LTR	RMER17C	ERVK	chr4RMER17C134004022	NonProperStrand	1	chr8	25149671	25149731	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-inf
chrX	42813554	42816787	LINE	Lx8	L1	chrXLx842816620	ProperStrand	2	chr9	110221892	110222006	protein_coding	2610002I17Rik	intron	ENSMUSG00000054836	ProperStrand	17	1	-20.8675
chr7	28410337	28410443	protein_coding	Akt2	intron	ENSMUSG00000004056	NonProperStrand	46	chr13	44869625	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.0046
chrX	77790034	77790066	LINE	L1Md_T	L1	chrXL1Md_T77786512	ProperStrand	4	chr17	39847802	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr5	105792486	105792607	LTR	ETnERV3-int	ERVK	chr5ETnERV3-int105789964	ProperStrand	35	chr6	29537436	29537456	protein_coding	Tnpo3	intron	ENSMUSG00000012535	ProperStrand	28	2	-inf
chr9	123462036	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	140238099	140238200	protein_coding	Ints1	intron	ENSMUSG00000029547	ProperStrand	67	3	-3.5149
chr4	135479571	135479661	protein_coding	Fuca1	intron	ENSMUSG00000028673	NonProperStrand	9	chr4	135474392	135477455	protein_coding	Cnr2	utr3	ENSMUSG00000062585	NonProperStrand	13	4	-inf
chr8	104257990	104258055	LINE	L1Md_F2	L1	chr8L1Md_F2104257695	NonProperStrand	1	chr6	43336250	43336322	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	1	-inf
chr3	39867971	39868071	LINE	L1VL2	L1	chr3L1VL239867962	NonProperStrand	2	chr3	39867801	39867891	LINE	Lx	L1	chr3Lx39867734	NonProperStrand	1	1	-inf
chr15	57792614	57792686	protein_coding	Wdr67	intron	ENSMUSG00000022364	ProperStrand	4	chr4	145164946	145164996	pseudogene	Gm13228	.	ENSMUSG00000082352	NonProperStrand	4	1	-inf
chr17	39847811	39847879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	28414320	28414410	SINE	B4A	B4	chr6B4A28414327	ProperStrand	1	1	-inf
chr17	39847701	39847738	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	33522748	33522828	LTR	RMER19B	ERVK	chr5RMER19B33522470	NonProperStrand	18	3	-3.5412
chr14	21438997	21439040	LTR	MTEb	MaLR	chr14MTEb21438717	NonProperStrand	1	chr14	21424643	21424696	protein_coding	Usp54	intron	ENSMUSG00000034235	NonProperStrand	7	1	-inf
chr17	56424902	56434477	protein_coding	Plin3	intron	ENSMUSG00000024197	ProperStrand	33	chr17	56434491	56434581	protein_coding	Arrdc5	intron	ENSMUSG00000073380	ProperStrand	28	5	-inf
chr5	105730811	105730850	LTR	RMER17C-int	ERVK	chr5RMER17C-int105730306	NonProperStrand	3	chr5	105700569	105700618	protein_coding	Gbp6	utr3	ENSMUSG00000079362	NonProperStrand	66	1	-18.0910
chr11	40729155	40733347	LINE	L1Md_A	L1	chr11L1Md_A40728644	NonProperStrand	1	chr17	39847621	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846455	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	108266498	108267867	protein_coding-noncoding	5330417C22Rik	utr3	ENSMUSG00000040412	NonProperStrand	1	1	-inf
chr2	170134813	170134905	LINE	Lx8	L1	chr2Lx8170134610	ProperStrand	2	chr17	39847129	39847185	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr14	112121771	112121861	LINE	Lx	L1	chr14Lx112121751	NonProperStrand	1	chr14	112122075	112122175	LINE	Lx	L1	chr14Lx112121784	NonProperStrand	1	1	-inf
chr9	66268508	66268586	protein_coding	Herc1	intron	ENSMUSG00000038664	ProperStrand	10	chr5	137823141	137823161	protein_coding	Zan	intron	ENSMUSG00000079173	NonProperStrand	6	1	-22.0401
chr17	39845250	39845312	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr1	21875962	21876045	protein_coding	Kcnq5	intron	ENSMUSG00000028033	ProperStrand	21	1	-4.1417
chr1	72277337	72277355	SINE	B1_Mus1	Alu	chr1B1_Mus172277235	ProperStrand	1	chr11	3965422	3965557	protein_coding	Sec14l3	intron	ENSMUSG00000054986	ProperStrand	11	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr18	45617335	45617396	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	1	-10.7286
chr12	80122070	80122130	SINE	B2_Mm1a	B2	chr12B2_Mm1a80121998	NonProperStrand	2	chr12	80121760	80121843	SINE	B3A	B2	chr12B3A80121704	ProperStrand	1	1	-inf
chr7	142576681	142576866	LINE	L1VL2	L1	chr7L1VL2142575988	NonProperStrand	1	chr2	37472425	37473579	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	1	-inf
chr8	117258511	117258606	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-3.1612
chr8	83732045	83732110	LINE	Lx3C	L1	chr8Lx3C83731684	ProperStrand	1	chr8	83733240	83733295	LINE	Lx	L1	chr8Lx83733040	ProperStrand	8	1	-inf
chr16	20574300	20574400	LTR	IAPEz-int	ERVK	chr16IAPEz-int20573303	NonProperStrand	1	chr2	131919439	131919529	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-inf
chr18	38420433	38420523	protein_coding	0610009O20Rik	intron	ENSMUSG00000024442	ProperStrand	8	chr11	115513890	115513990	protein_coding	Grb2	intron	ENSMUSG00000059923	ProperStrand	75	1	-15.7250
chr11	121459464	121460474	protein_coding-noncoding	Tbcd	utr5	ENSMUSG00000039230	ProperStrand	2	chr11	121453639	121459448	protein_coding	Tbcd	intron	ENSMUSG00000039230	ProperStrand	16	2	-inf
chr13	108022802	108022818	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n108022805	NonProperStrand	1	chr17	70963685	70963762	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr10	76888356	76888425	LINE	L1M5	L1	chr10L1M576888039	ProperStrand	2	chr5	114851974	114852036	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-16.7741
chr2	165143072	165143128	protein_coding	Elmo2	intron	ENSMUSG00000017670	ProperStrand	5	chr13	46693770	46693817	protein_coding	Cap2	intron	ENSMUSG00000021373	NonProperStrand	63	1	-17.1206
chr7	34202514	34204068	LINE	L1Md_F2	L1	chr7L1Md_F234202552	ProperStrand	46	chr7	34202420	34202663	LTR	RLTR9E	ERVK	chr7RLTR9E34202391	ProperStrand	22	9	-inf
chr18	34260645	34260735	SINE	B1_Mus1	Alu	chr18B1_Mus134260622	NonProperStrand	1	chr18	34260789	34260889	SINE	RSINE1	B4	chr18RSINE134260806	ProperStrand	1	1	-inf
chr17	9496726	9496816	LINE	L1MD	L1	chr17L1MD9496716	NonProperStrand	1	chr17	9497118	9497218	LINE	Lx2A	L1	chr17Lx2A9497004	ProperStrand	1	1	-inf
chr8	107317910	107318008	LINE	HAL1	L1	chr8HAL1107317903	ProperStrand	2	chr17	39847641	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr14	76256234	76256334	SINE	B2_Mm1t	B2	chr14B2_Mm1t76256233	ProperStrand	1	chr14	76256416	76256506	SINE	B3	B2	chr14B376256367	ProperStrand	1	1	-inf
chr17	39847698	39847759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	82895064	82895146	SINE	B1_Mur2	Alu	chr1B1_Mur282895071	NonProperStrand	1	1	-inf
chr15	62044108	62044165	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr14	32228428	32228490	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	NonProperStrand	15	1	-9.0123
chr7	133018189	133018260	protein_coding	D430042O09Rik	utr3	ENSMUSG00000032743	NonProperStrand	292	chr1	63232010	63232091	protein_coding	Gpr1	intron	ENSMUSG00000046856	NonProperStrand	66	1	-8.6623
chr7	6623673	6623803	LINE	Lx8	L1	chr7Lx86623503	NonProperStrand	4	chr17	39846411	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr17	39846955	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	152332262	152332381	SINE	B4	B4	chr2B4152332249	NonProperStrand	1	1	-inf
chr11	73306817	73306885	LINE	L1_Mus1	L1	chr11L1_Mus173306692	ProperStrand	1	chr6	124824968	124825150	protein_coding	Cd4	intron	ENSMUSG00000023274	ProperStrand	35	1	-inf
chr11	106838945	106839002	SINE	B3	B2	chr11B3106838947	ProperStrand	1	chrX	52432394	52432479	pseudogene	Gm7974	.	ENSMUSG00000080889	NonProperStrand	15	1	-inf
chr11	109011659	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	115489457	115490398	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	3	-8.3975
chr8	105355962	105355994	LINE	Lx5	L1	chr8Lx5105355890	ProperStrand	1	chr3	37481454	37481655	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	1	-inf
chr7	122012292	122012311	LINE	Lx4B	L1	chr7Lx4B122011956	NonProperStrand	9	chr3	89300601	89300703	SINE	B1_Mur1	Alu	chr3B1_Mur189300621	NonProperStrand	1	1	-inf
chr12	55496004	55496113	LTR	MTD	MaLR	chr12MTD55495808	NonProperStrand	1	chr12	55496204	55496242	Simple_repeat	(TTTTG)n	Simple_repeat	chr12(TTTTG)n55496211	NonProperStrand	1	1	-inf
chr11	60442446	60442591	lincRNA	Gm17423	intron	ENSMUSG00000090281	NonProperStrand	9	chr11	60442337	60442437	pseudogene	Gm12615	.	ENSMUSG00000082904	ProperStrand	1	1	-inf
chr2	50398416	50398432	LINE	Lx	L1	chr2Lx50397259	ProperStrand	5	chr11	113372142	113372234	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-14.1461
chr17	39848716	39848814	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	74453139	74453188	protein_coding	1700016M24Rik	intron	ENSMUSG00000022603	ProperStrand	4	1	-6.9461
chr9	123462115	123462160	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	64072304	64072385	protein_coding	Vmn2r3	intron	ENSMUSG00000091572	NonProperStrand	5	1	-5.8308
chr17	4082162	4082263	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr6	48347622	48347649	protein_coding	Krba1	intron	ENSMUSG00000042810	NonProperStrand	4	1	-13.3302
chr2	156394356	156394458	protein_coding	0610011L14Rik	utr3	ENSMUSG00000027628	ProperStrand	3	chr12	67660152	67660204	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-17.9855
chr17	39847676	39847692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	22568668	22568795	protein_coding	Asxl3	intron	ENSMUSG00000045215	ProperStrand	3	1	-4.3512
chr7	78794701	78794801	LINE	Lx9	L1	chr7Lx978794702	ProperStrand	1	chr7	78794887	78794977	LINE	Lx9	L1	chr7Lx978794855	ProperStrand	1	1	-inf
chr17	39845758	39845777	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	180257629	180257658	protein_coding	Ntsr1	intron	ENSMUSG00000027568	ProperStrand	19	1	-4.3349
chr12	78350926	78350987	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	115490343	115490392	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-3.1809
chr8	111588516	111588625	LINE	Lx9	L1	chr8Lx9111588425	ProperStrand	5	chr9	110281293	110281332	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-12.7185
chr8	88642641	88642741	LINE	L1_Mur3	L1	chr8L1_Mur388642405	ProperStrand	1	chr8	88642950	88643040	LINE	L1_Mus3	L1	chr8L1_Mus388642834	ProperStrand	1	1	-inf
chr19	23010627	23010717	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	36	chr2	150242425	150242525	protein_coding	Zfp442	intron	ENSMUSG00000068130	NonProperStrand	31	1	-14.3963
chr3	91182088	91182178	LINE	Lx2B	L1	chr3Lx2B91181866	ProperStrand	1	chr3	91182324	91182424	LTR	RMER12	ERVK	chr3RMER1291182298	ProperStrand	1	1	-inf
chr18	36788203	36788259	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	chr13	44869602	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.4609
chr5	138281089	138281185	LINE	L1Md_F2	L1	chr5L1Md_F2138279089	ProperStrand	14	chr11	33480515	33480532	LTR	MTD	MaLR	chr11MTD33480389	ProperStrand	7	1	-19.2920
chr11	19929556	19929646	Other	RMER1C	Other	chr11RMER1C19929340	ProperStrand	5	chr11	19929720	19929820	SINE	B1_Mm	Alu	chr11B1_Mm19929653	ProperStrand	2	2	-inf
chr11	68242439	68242539	LINE	L1MC4a	L1	chr11L1MC4a68242328	ProperStrand	5	chr11	68248204	68248294	protein_coding	Pik3r5	intron	ENSMUSG00000020901	NonProperStrand	75	1	-16.7504
chr8	79310136	79310172	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	chr17	7188574	7188620	protein_coding	Rnaset2b	intron	ENSMUSG00000079724	ProperStrand	41	1	-11.3006
chr15	10671442	10671528	lincRNA	4930556M19Rik	intron	ENSMUSG00000092044	NonProperStrand	161	chr9	4302583	4302610	protein_coding	Aasdhppt	exon	ENSMUSG00000025894	ProperStrand	10	1	-13.7087
chr12	99254751	99254835	LTR	MER57A-int	ERV1	chr12MER57A-int99254469	ProperStrand	1	chr17	39846420	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	141448732	141448778	antisense	Gm13643	.	ENSMUSG00000085922	ProperStrand	1	chr17	46782391	46782446	lincRNA	Gm16736	intron	ENSMUSG00000086673	NonProperStrand	106	1	-inf
chr11	40701614	40701672	LINE	L1Md_F2	L1	chr11L1Md_F240701085	ProperStrand	2	chr13	44869578	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr2	90395153	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr5	115489458	115489561	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-6.8696
chr15	42742795	42742895	LINE	Lx3A	L1	chr15Lx3A42742068	NonProperStrand	1	chr15	42742896	42742986	LINE	Lx3A	L1	chr15Lx3A42742806	NonProperStrand	1	1	-inf
chr12	110499110	110499202	LINE	L1Md_F2	L1	chr12L1Md_F2110497063	NonProperStrand	25	chr13	97190561	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.8531
chr10	12615409	12615493	LINE	L1VL2	L1	chr10L1VL212614748	ProperStrand	2	chr17	39847800	39847874	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr14	54511165	54511226	LTR	RMER12	ERVK	chr14RMER1254510925	ProperStrand	2	chr17	25218168	25218243	protein_coding	Ift140	intron	ENSMUSG00000024169	ProperStrand	55	1	-19.1124
chr9	46173860	46173960	LINE	L1M5	L1	chr9L1M546173525	NonProperStrand	1	chr9	46164009	46164052	LTR	MTA_Mm	MaLR	chr9MTA_Mm46163805	ProperStrand	1	1	-inf
chr1	172321546	172321562	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	chr8	106885651	106885738	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	1	-8.3818
chr12	59040429	59040500	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr8	87488221	87488261	protein_coding	Rnaseh2a	intron	ENSMUSG00000052926	NonProperStrand	82	1	-9.4025
chr17	17506178	17506278	LINE	Lx4A	L1	chr17Lx4A17505459	NonProperStrand	6	chr17	17505250	17505340	SINE	B2_Mm1a	B2	chr17B2_Mm1a17505275	NonProperStrand	4	4	-inf
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	115240299	115240555	protein_coding	Ankrd13a	intron	ENSMUSG00000041870	ProperStrand	3	1	-4.3512
chr6	128937285	128937322	protein_coding	Clec2g	intron	ENSMUSG00000000248	ProperStrand	3	chr2	157589360	157589447	protein_coding	Ctnnbl1	intron	ENSMUSG00000027649	NonProperStrand	46	1	-18.9645
chr7	107673399	107673523	LTR	BGLII_B	ERVK	chr7BGLII_B107673431	NonProperStrand	1	chr14	31135372	31135508	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	1	-inf
chr2	102038241	102038295	SINE	MIRb	MIR	chr2MIRb102038206	ProperStrand	1	chr11	113130768	113130878	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-inf
chr17	39847659	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	19350044	19350097	LTR	MERVL-int	ERVL	chr7MERVL-int19349627	NonProperStrand	3	1	-4.3512
chr8	104616083	104616099	LINE	Lx3_Mus	L1	chr8Lx3_Mus104614584	NonProperStrand	1	chr4	9658679	9658763	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int9656678	NonProperStrand	7	1	-inf
chrX	73952227	73952302	LINE	L1Md_T	L1	chrXL1Md_T73946773	ProperStrand	32	chr13	44869942	44870016	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.7157
chr18	36099920	36099998	SINE	B2_Mm2	B2	chr18B2_Mm236099941	NonProperStrand	1	chr6	25756899	25756967	protein_coding	Pot1a	intron	ENSMUSG00000029676	ProperStrand	9	1	-inf
chr15	47539993	47540120	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr2	90395150	90395169	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-7.8633
chr9	123461905	123461936	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr9	37527278	37527363	protein_coding	Olfr151	intron	ENSMUSG00000061165	NonProperStrand	14	1	-3.7266
chr2	16231166	16231266	LTR	MT2A	ERVL	chr2MT2A16230829	NonProperStrand	1	chr2	16231327	16231417	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n16231312	NonProperStrand	1	1	-inf
chr1	153309637	153309714	LTR	ORR1D2	MaLR	chr1ORR1D2153309606	NonProperStrand	1	chr1	153296075	153296119	protein_coding	1190005F20Rik	intron	ENSMUSG00000053286	NonProperStrand	31	1	-inf
chr19	4830419	4830507	protein_coding	Ccs	intron	ENSMUSG00000034108	ProperStrand	18	chr13	97190562	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.5176
chr10	62839835	62839892	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr2	112772969	112772988	protein_coding	Ryr3	intron	ENSMUSG00000057378	NonProperStrand	77	1	-8.8466
chr13	70626075	70626127	LTR	RLTR1B-int	ERV1	chr13RLTR1B-int70625586	NonProperStrand	1	chr7	139996628	139996733	protein_coding	Fam53b	intron	ENSMUSG00000030956	ProperStrand	12	1	-inf
chr19	41918279	41918318	SINE	B4A	B4	chr19B4A41918257	ProperStrand	3	chr9	118674951	118675009	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr13	40904908	40904977	LINE	L1Md_F2	L1	chr13L1Md_F240904927	ProperStrand	26	chr4	121053943	121054296	pseudogene	Gm12884	.	ENSMUSG00000081465	ProperStrand	1	1	-inf
chr16	35981616	35981645	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr1	6715086	6715105	protein_coding	St18	intron	ENSMUSG00000033740	NonProperStrand	13	1	-13.0039
chr6	136127986	136128086	SINE	B3A	B2	chr6B3A136128011	NonProperStrand	1	chr6	136128418	136128508	Simple_repeat	(GGAA)n	Simple_repeat	chr6(GGAA)n136128419	NonProperStrand	1	1	-inf
chr17	75621473	75621501	protein_coding	Ltbp1	intron	ENSMUSG00000001870	NonProperStrand	24	chr7	30845429	30845543	protein_coding	Zfp82	intron	ENSMUSG00000058447	NonProperStrand	3	1	-inf
chr3	142227718	142227818	protein_coding	Gbp3	intron	ENSMUSG00000028268	NonProperStrand	5	chr3	141665033	141665123	protein_coding	Bmpr1b	intron	ENSMUSG00000052430	ProperStrand	14	1	-20.0849
chr3	8107380	8107480	LINE	L1VL1	L1	chr3L1VL18106154	NonProperStrand	1	chr3	8107538	8107628	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int8107494	NonProperStrand	1	1	-inf
chr9	118674951	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr18	67794596	67794662	protein_coding	Cep76	intron	ENSMUSG00000073542	NonProperStrand	16	1	-8.6262
chr5	118729507	118729550	SINE	ID_B1	B4	chr5ID_B1118729505	ProperStrand	1	chr17	85028000	85028098	protein_coding	Dync2li1	intron	ENSMUSG00000024253	ProperStrand	3	1	-inf
chr17	39848463	39848829	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	5379242	5379361	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	55	-8.4742
chr4	45408402	45408502	SINE	B2_Mm2	B2	chr4B2_Mm245408292	NonProperStrand	1	chr4	45408549	45408639	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n45408565	NonProperStrand	1	1	-inf
chr16	51776749	51776769	LINE	Lx7	L1	chr16Lx751776624	NonProperStrand	1	chr17	70963685	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr5	103677337	103677427	LINE	L1_Mur2	L1	chr5L1_Mur2103676311	NonProperStrand	1	chr5	103677933	103678033	LTR	RLTR9A	ERVK	chr5RLTR9A103677670	ProperStrand	1	1	-inf
chr17	39846883	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	120573796	120574107	LTR	MTE2b	MaLR	chr9MTE2b120573676	NonProperStrand	9	2	-3.9140
chr11	17221329	17221379	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr15	86250787	86250827	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-9.9972
chr17	39847636	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	49255716	49255816	LTR	MMERGLN-int	ERV1	chr6MMERGLN-int49255515	NonProperStrand	5	1	-3.2379
chr17	33370190	33370280	LINE	L1VL4	L1	chr17L1VL433369666	ProperStrand	1	chr17	33383097	33383197	protein_coding	Zfp955a	intron	ENSMUSG00000008686	ProperStrand	4	1	-inf
chr5	42671824	42671924	LTR	IAPEz-int	ERVK	chr5IAPEz-int42671800	NonProperStrand	1	chr5	42671634	42671724	LTR	IAPLTR1a_Mm	ERVK	chr5IAPLTR1a_Mm42671464	NonProperStrand	1	1	-inf
chr17	39847743	39847843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	104784091	104784687	SINE	B2_Mm2	B2	chr3B2_Mm2104784530	NonProperStrand	1	1	-inf
chr17	39847736	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	8958424	8958452	protein_coding	Abcb4	exon	ENSMUSG00000042476	ProperStrand	3	1	-4.3512
chr13	73507405	73507495	LINE	L1MCa	L1	chr13L1MCa73506770	ProperStrand	2	chr13	73507526	73507626	LINE	L1MCa	L1	chr13L1MCa73507511	ProperStrand	2	2	-inf
chr4	44443378	44443478	SINE	B4	B4	chr4B444443379	NonProperStrand	1	chr4	44443140	44443230	Simple_repeat	(TATATG)n	Simple_repeat	chr4(TATATG)n44443158	ProperStrand	1	1	-inf
chr17	39847298	39847417	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	93608199	93608237	protein_coding	Cbr1	utr5	ENSMUSG00000051483	ProperStrand	6	1	-3.9545
chr11	117853312	117853379	protein_coding	Pgs1	intron	ENSMUSG00000017715	ProperStrand	51	chr2	5379266	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.8610
chr7	80066156	80066227	LINE	L1_Mus2	L1	chr7L1_Mus280066164	ProperStrand	10	chr7	80064977	80065039	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n80064787	ProperStrand	1	1	-inf
chr14	48191346	48191436	LTR	MT2C_Mm	ERVL	chr14MT2C_Mm48191276	NonProperStrand	1	chr14	48191079	48191179	SINE	B2_Mm2	B2	chr14B2_Mm248191082	NonProperStrand	1	1	-inf
chr17	35001164	35009617	protein_coding	C2	intron	ENSMUSG00000024371	NonProperStrand	158	chr17	35001033	35009444	protein_coding	Gm20547	exon	ENSMUSG00000092511	NonProperStrand	14	11	-20.3737
chr16	93870689	93870739	protein_coding	Morc3	exon	ENSMUSG00000039456	ProperStrand	53	chr11	50821100	50821181	protein_coding	Olfr51	exon	ENSMUSG00000060918	NonProperStrand	1	1	-inf
chr12	59040425	59040451	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr5	140543970	140543986	protein_coding	Mad1l1	intron	ENSMUSG00000029554	NonProperStrand	52	3	-inf
chr18	74567514	74567651	Simple_repeat	(GAAA)n	Simple_repeat	chr18(GAAA)n74567491	ProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr16	93082247	93082337	SINE	B3A	B2	chr16B3A93082200	ProperStrand	1	chr16	93082066	93082166	Simple_repeat	(TG)n	Simple_repeat	chr16(TG)n93082006	NonProperStrand	1	1	-inf
chr17	39847006	39847047	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	56035277	56037502	protein_coding	Rg9mtd1	exon	ENSMUSG00000044763	NonProperStrand	4	1	-3.6552
chr12	111671772	111671805	LTR	RMER15	ERVL	chr12RMER15111671762	ProperStrand	5	chr6	3201509	3201537	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-7.8442
chr5	138167195	138167236	SINE	PB1D9	Alu	chr5PB1D9138167146	ProperStrand	2	chr10	128076079	128076173	protein_coding	Ikzf4	intron	ENSMUSG00000002578	NonProperStrand	38	1	-20.3523
chr6	8557348	8557448	LTR	IAPEz-int	ERVK	chr6IAPEz-int8557301	NonProperStrand	1	chr6	8557605	8557694	LTR	IAPEz-int	ERVK	chr6IAPEz-int8557553	NonProperStrand	1	1	-inf
chr1	170746323	170746346	LINE	Lx6	L1	chr1Lx6170746058	ProperStrand	1	chr9	123461822	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	138001168	138001268	LTR	MTEb-int	MaLR	chr4MTEb-int138000387	ProperStrand	1	chr4	138001789	138001879	LTR	MTEb	MaLR	chr4MTEb138001778	ProperStrand	1	1	-inf
chr11	109011807	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	107903699	107903801	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-4.5827
chr15	55091330	55091366	LTR	RMER5	ERV1	chr15RMER555091260	NonProperStrand	2	chr15	55090710	55090813	protein_coding	Deptor	utr3	ENSMUSG00000022419	ProperStrand	8	2	-inf
chr10	111989642	111989696	LTR	MMVL30-int	ERV1	chr10MMVL30-int111988670	ProperStrand	1	chr10	111989889	111989917	LTR	RLTR1C	ERV1	chr10RLTR1C111989731	ProperStrand	1	1	-inf
chr9	123461876	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	33551236	33755045	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	3	-5.6584
chr6	43336250	43336334	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	chr3	145602422	145602496	protein_coding	2410004B18Rik	intron	ENSMUSG00000036873	ProperStrand	7	1	-17.3228
chr17	39846453	39847163	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	25575455	25575471	LTR	RLTR6-int	ERV1	chr2RLTR6-int25575016	NonProperStrand	11	5	-10.2277
chr1	87374010	87378979	LINE	L1Md_F2	L1	chr1L1Md_F287373564	ProperStrand	2	chr17	39846842	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	24176066	24176166	LTR	LTRIS_Mus	ERV1	chr5LTRIS_Mus24176052	ProperStrand	1	chr5	24175942	24176032	SINE	B1_Mus2	Alu	chr5B1_Mus224175955	NonProperStrand	1	1	-inf
chr10	44094981	44095038	Other	RMER1B	Other	chr10RMER1B44094712	ProperStrand	1	chr5	121823008	121823075	protein_coding-noncoding	Trafd1	utr3	ENSMUSG00000042726	NonProperStrand	4	1	-inf
chr17	39846900	39846924	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	97781458	97782357	SINE	MIRc	MIR	chr11MIRc97781828	ProperStrand	5	1	-3.1907
chr12	104234227	104234247	protein_coding	Unc79	intron	ENSMUSG00000021198	ProperStrand	4	chr4	25637830	25637928	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-17.6816
chr17	70963740	70963796	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	12261001	12278043	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	2	-5.7438
chr14	111255246	111255346	LINE	L1_Mur2	L1	chr14L1_Mur2111255000	NonProperStrand	1	chr14	111255543	111255634	LINE	L1_Mur2	L1	chr14L1_Mur2111255487	NonProperStrand	1	1	-inf
chr13	46686654	46686750	protein_coding	Cap2	intron	ENSMUSG00000021373	NonProperStrand	63	chr6	112620896	112628506	protein_coding	Rad18	intron	ENSMUSG00000030254	ProperStrand	76	1	-11.4489
chr9	54601196	54603363	SINE	MIRc	MIR	chr9MIRc54603226	NonProperStrand	2	chr15	62147906	62147996	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	1	-13.6556
chr15	36205276	36205309	protein_coding	Rnf19a	intron	ENSMUSG00000022280	NonProperStrand	6	chr16	36081421	36081464	protein_coding	Ccdc58	utr5	ENSMUSG00000075229	ProperStrand	93	1	-15.9311
chr6	148701742	148701832	LINE	L1_Mur1	L1	chr6L1_Mur1148701712	ProperStrand	1	chr6	148701985	148702085	LTR	ORR1E	MaLR	chr6ORR1E148701955	ProperStrand	1	1	-inf
chr9	87322906	87323006	LINE	L1_Mur2	L1	chr9L1_Mur287322699	ProperStrand	1	chr9	87323274	87323364	SINE	B3	B2	chr9B387323181	ProperStrand	1	1	-inf
chr11	115789261	115789352	protein_coding-noncoding	Recql5	utr3	ENSMUSG00000020752	NonProperStrand	10	chr11	115789347	115789954	protein_coding	Recql5	exon	ENSMUSG00000020752	NonProperStrand	21	5	-20.3449
chr4	145679568	145679668	protein_coding	Gm13247	intron	ENSMUSG00000056300	NonProperStrand	8	chr4	147030126	147030216	protein_coding	2610305D13Rik	intron	ENSMUSG00000066000	NonProperStrand	8	1	-19.9835
chr14	50916616	50916650	LINE	Lx9	L1	chr14Lx950916569	NonProperStrand	1	chr17	39847760	39847841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	94409368	94409386	LINE	L1_Mus2	L1	chr12L1_Mus294408819	NonProperStrand	4	chr17	39846433	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr2	143231009	143231099	LINE	Lx3_Mus	L1	chr2Lx3_Mus143231011	ProperStrand	1	chr2	143230816	143230916	LTR	MLT1A0	MaLR	chr2MLT1A0143230816	NonProperStrand	1	1	-inf
chr11	109011747	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	75038429	75050544	protein_coding	Med26	intron	ENSMUSG00000045248	NonProperStrand	147	2	-7.2668
chr12	31676455	31676529	LINE	L1Md_T	L1	chr12L1Md_T31676291	ProperStrand	3	chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39847037	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	143059383	143059400	SINE	B1_Mur4	Alu	chr6B1_Mur4143059295	ProperStrand	1	1	-inf
chr8	71612963	71617585	protein_coding	Atp6v1b2	intron	ENSMUSG00000006273	ProperStrand	70	chr8	71612114	71612919	protein_coding	Slc18a1	intron	ENSMUSG00000036330	NonProperStrand	65	8	-inf
chr17	47947524	47947642	SINE	B2_Mm2	B2	chr17B2_Mm247947554	ProperStrand	1	chr3	89449330	89449346	protein_coding	Kcnn3	intron	ENSMUSG00000000794	ProperStrand	88	1	-inf
chr17	4082221	4082248	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr5	110665685	110665722	protein_coding	Ankle2	intron	ENSMUSG00000029501	NonProperStrand	25	1	-9.4240
chr12	71831731	71831821	DNA	URR1B	MER1_type	chr12URR1B71831689	ProperStrand	2	chr12	71831903	71832003	LTR	ORR1E	MaLR	chr12ORR1E71831902	NonProperStrand	2	2	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	125714405	125714471	protein_coding	Tmc7	intron	ENSMUSG00000042246	NonProperStrand	30	1	-8.1958
chr14	67190894	67190994	LTR	ORR1B1	MaLR	chr14ORR1B167190906	ProperStrand	1	chr14	67191360	67191450	SINE	RSINE1	B4	chr14RSINE167191350	NonProperStrand	1	1	-inf
chr17	39846425	39846459	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	174462602	174464045	SINE	RSINE1	B4	chr2RSINE1174463446	ProperStrand	1	1	-inf
chr12	81009334	81009370	SINE	B2_Mm2	B2	chr12B2_Mm281009168	NonProperStrand	1	chr12	81009369	81009415	SINE	B4A	B4	chr12B4A81009375	NonProperStrand	1	1	-inf
chr17	23818076	23818151	protein_coding	Cldn6	exon	ENSMUSG00000023906	ProperStrand	74	chr9	59666844	59666892	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-5.8755
chr5	146260994	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	23108954	23111356	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	3	-7.8192
chr2	84845227	84845260	protein_coding	P2rx3	intron	ENSMUSG00000027071	NonProperStrand	14	chr9	55941357	55941470	protein_coding	Pstpip1	intron	ENSMUSG00000032322	ProperStrand	7	1	-19.2920
chr15	100062663	100062786	protein_coding	Atf1	utr5	ENSMUSG00000023027	ProperStrand	30	chr4	149120030	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.9563
chr8	69700702	69700792	LTR	RLTR10-int	ERVK	chr8RLTR10-int69700498	NonProperStrand	1	chr8	69698625	69698725	LTR	RMER19C	ERVK	chr8RMER19C69698610	ProperStrand	1	1	-inf
chr17	39843387	39843487	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr15	102084698	102084788	protein_coding	Rarg	intron	ENSMUSG00000001288	NonProperStrand	44	1	-3.1134
chr9	68381152	68381242	LINE	L1Md_F3	L1	chr9L1Md_F368381130	NonProperStrand	1	chr9	68380939	68381039	LINE	L1Md_T	L1	chr9L1Md_T68380135	NonProperStrand	1	1	-inf
chr8	72383003	72383103	protein_coding-noncoding	Pbx4	utr5	ENSMUSG00000031860	NonProperStrand	1	chr8	72383910	72384002	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	1	-inf
chr9	59675687	59675732	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr7	28356871	28356986	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-5.6042
chr11	30801596	30801694	LINE	Lx5	L1	chr11Lx530800434	NonProperStrand	2	chr18	78023987	78024003	LINE	Lx8	L1	chr18Lx878023888	ProperStrand	1	1	-inf
chr9	110281291	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr9	72686787	72686852	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-4.2776
chr5	122461586	122461618	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	chr14	24176119	24176197	protein_coding	Kcnma1	intron	ENSMUSG00000063142	ProperStrand	191	1	-7.9361
chr13	62453034	62453096	Satellite	MMSAT4	Satellite	chr13MMSAT462452654	ProperStrand	2	chr10	32832289	32832372	protein_coding	Trdn	intron	ENSMUSG00000019787	NonProperStrand	18	1	-21.0482
chr14	57620295	57620385	DNA	URR1B	MER1_type	chr14URR1B57620255	ProperStrand	1	chr14	57620003	57620103	LTR	RLTR19	ERVK	chr14RLTR1957620007	ProperStrand	1	1	-inf
chr6	143064428	143064528	LTR	RMER17C	ERVK	chr6RMER17C143064227	NonProperStrand	1	chr6	143064639	143064729	SINE	B1_Mm	Alu	chr6B1_Mm143064646	ProperStrand	1	1	-inf
chr9	108493248	108493375	protein_coding	P4htm	intron	ENSMUSG00000006675	NonProperStrand	85	chr2	153203860	153204573	protein_coding	Asxl1	intron	ENSMUSG00000042548	ProperStrand	28	1	-12.8638
mmu-miR-706	0	15	miRNA	mmu-miR-706	.	mmu-miR-706	ProperStrand	4	chr5	140386209	140386312	protein_coding	Elfn1	intron	ENSMUSG00000048988	NonProperStrand	14	1	-20.8232
chr10	129491712	129491802	LTR	LTRIS2	ERV1	chr10LTRIS2129491287	ProperStrand	1	chr7	103550461	103550561	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr2	129082073	129082096	antisense	Gm14024	.	ENSMUSG00000085485	ProperStrand	18	chr8	80861806	80861883	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-9.7167
chr17	40963240	40963330	protein_coding	Rhag	intron	ENSMUSG00000023926	NonProperStrand	1	chr18	9808554	9808654	protein_coding	Colec12	intron	ENSMUSG00000036103	ProperStrand	25	1	-inf
chr12	84345707	84345735	protein_coding	Dpf3	intron	ENSMUSG00000021221	ProperStrand	24	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.4077
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr16	35632735	35632863	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	1	-8.0488
chr19	14454848	14454904	LINE	L1Md_F2	L1	chr19L1Md_F214454614	ProperStrand	3	chr17	39847165	39847259	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr6	71874739	71874841	protein_coding	Polr1a	intron	ENSMUSG00000049553	ProperStrand	35	chr15	82829879	82829928	protein_coding	Nfam1	utr3	ENSMUSG00000058099	ProperStrand	119	1	-11.7356
chr14	99056171	99056251	LTR	MTEb	MaLR	chr14MTEb99055898	ProperStrand	1	chr4	56923377	56923441	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	140	1	-inf
chr11	12446612	12446702	LTR	RMER17C-int	ERVK	chr11RMER17C-int12446590	ProperStrand	8	chr11	12446491	12446591	SINE	B1_Mus1	Alu	chr11B1_Mus112446445	ProperStrand	1	1	-inf
chr8	122416977	122417090	LTR	RLTR4_MM-int	ERV1	chr8RLTR4_MM-int122414161	NonProperStrand	4	chr7	3219235	3219262	miRNA	Mir292	.	ENSMUSG00000078041	ProperStrand	8	1	-inf
chr8	109826609	109826636	protein_coding	Nfat5	intron	ENSMUSG00000003847	ProperStrand	41	chr16	4638134	4638221	protein_coding	Coro7	intron	ENSMUSG00000039637	ProperStrand	312	1	-9.4870
chr4	149056086	149056183	protein_coding	Pik3cd	intron	ENSMUSG00000039936	ProperStrand	144	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-10.0433
chr7	33586681	33586771	LINE	L1Md_A	L1	chr7L1Md_A33586609	ProperStrand	1	chr7	33586332	33586432	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int33584571	ProperStrand	1	1	-inf
chr4	17087263	17087353	LINE	L1Md_F2	L1	chr4L1Md_F217087265	NonProperStrand	1	chr4	17087049	17087149	LINE	Lx6	L1	chr4Lx617086529	NonProperStrand	1	1	-inf
chr16	24422944	24422970	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr19	4748298	4748434	protein_coding	Spnb3	intron	ENSMUSG00000067889	NonProperStrand	23	1	-11.0628
chr2	27146209	27146299	protein_coding	Vav2	intron	ENSMUSG00000009621	NonProperStrand	14	chr3	95415697	95415797	protein_coding	Golph3l	intron	ENSMUSG00000046519	NonProperStrand	3	1	-20.8283
chr15	69534057	69534080	LINE	L1Md_F2	L1	chr15L1Md_F269532127	NonProperStrand	1	chr1	182011708	182011846	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-inf
chr16	18533189	18533309	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	chr9	123461830	123462148	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-4.0153
chr16	50544093	50544143	lincRNA	G730013B05Rik	intron	ENSMUSG00000085617	ProperStrand	33	chr5	122034162	122034232	protein_coding	Aldh2	intron	ENSMUSG00000029455	ProperStrand	59	1	-13.2663
chr9	96243463	96243544	protein_coding	Atp1b3	intron	ENSMUSG00000032412	NonProperStrand	27	chr9	118674951	118675012	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.5619
chr17	14754638	14754660	LINE	Lx8	L1	chr17Lx814754082	NonProperStrand	1	chr5	146261024	146261075	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chrX	74403016	74403144	LINE	L1_Mus3	L1	chrXL1_Mus374403018	NonProperStrand	2	chr13	71666202	71666219	Simple_repeat	(TC)n	Simple_repeat	chr13(TC)n71666206	ProperStrand	2	1	-19.8939
chr4	54263832	54263932	LINE	L1MC4	L1	chr4L1MC454263838	ProperStrand	1	chr4	54264287	54264377	LTR	MTE2b	MaLR	chr4MTE2b54264215	ProperStrand	1	1	-inf
chr9	20540038	20540094	LTR	MTE2a	MaLR	chr9MTE2a20539794	NonProperStrand	1	chr9	20540599	20540697	SINE	B4A	B4	chr9B4A20540468	NonProperStrand	1	1	-inf
chr14	62749207	62749309	LINE	L1M5	L1	chr14L1M562749083	NonProperStrand	2	chr14	62749541	62749631	LINE	L1MC1	L1	chr14L1MC162749371	NonProperStrand	2	2	-inf
chr2	27139052	27139137	protein_coding	Vav2	intron	ENSMUSG00000009621	ProperStrand	38	chr15	50676923	50676965	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	1	-13.1207
chr17	39846697	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	3204149	3204241	protein_coding	Nmt2	intron	ENSMUSG00000026643	ProperStrand	5	1	-3.1907
chr2	154531698	154531808	SINE	B4	B4	chr2B4154531692	ProperStrand	1	chr9	123462125	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	95769561	95769783	LINE	L2c	L2	chr8L2c95769518	ProperStrand	1	chr8	95765066	95769516	LINE	Lx8	L1	chr8Lx895765055	NonProperStrand	1	1	-inf
chr14	54898784	54898855	LTR	RLTR9A	ERVK	chr14RLTR9A54898718	ProperStrand	6	chr17	57022129	57022190	protein_coding	1700061G19Rik	intron	ENSMUSG00000024209	NonProperStrand	83	1	-16.1477
chr2	161018137	161019458	lincRNA	Gm14243	intron	ENSMUSG00000067745	NonProperStrand	16	chr16	90099822	90099904	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	1	-8.9755
chr9	123225015	123225115	LTR	MTA_Mm	MaLR	chr9MTA_Mm123224797	ProperStrand	1	chr9	123224714	123224804	LTR	ORR1E-int	MaLR	chr9ORR1E-int123224557	NonProperStrand	1	1	-inf
chr18	3697814	3697904	LINE	MusHAL1	L1	chr18MusHAL13697601	NonProperStrand	1	chr18	3698173	3698273	LTR	RLTR10A	ERVK	chr18RLTR10A3698014	NonProperStrand	1	1	-inf
chr16	59555144	59555163	protein_coding	Crybg3	exon	ENSMUSG00000022723	NonProperStrand	10	chr2	29074776	29074792	protein_coding	Ntng2	intron	ENSMUSG00000035513	NonProperStrand	31	1	-17.0114
chr17	39843658	39843708	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr16	16348336	16348433	protein_coding	Dnm1l	intron	ENSMUSG00000022789	ProperStrand	30	1	-3.8207
chr10	23785357	23785421	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr11	106501253	106501327	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	28	1	-11.5950
chr11	109011651	109011710	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	38617443	38617512	protein_coding	Nr6a1	intron	ENSMUSG00000063972	ProperStrand	112	1	-4.8830
chr2	5379345	5379377	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	135888381	135889050	protein_coding	Hip1	intron	ENSMUSG00000039959	NonProperStrand	75	1	-4.1239
chr11	5720591	5720712	LTR	ORR1C1	MaLR	chr11ORR1C15720608	NonProperStrand	1	chr8	74999846	74999882	SINE	B1_Mm	Alu	chr8B1_Mm74999834	ProperStrand	1	1	-inf
chr16	48224224	48224324	LINE	L1Md_F3	L1	chr16L1Md_F348224186	ProperStrand	1	chr16	48224045	48224135	LINE	L1_Mm	L1	chr16L1_Mm48223950	NonProperStrand	1	1	-inf
chr10	81400902	81400920	LTR	RLTR23	ERV1	chr10RLTR2381400893	NonProperStrand	1	chr12	13473347	13473406	protein_coding	Nbas	intron	ENSMUSG00000020576	ProperStrand	45	1	-inf
chr5	135181589	135181679	protein_coding	Eln	intron	ENSMUSG00000029675	NonProperStrand	64	chr2	119606169	119606269	protein_coding	Rpap1	intron	ENSMUSG00000034032	NonProperStrand	24	1	-13.7505
chr14	100218774	100218834	LINE	L1Md_T	L1	chr14L1Md_T100218512	NonProperStrand	4	chr11	97950030	97950122	protein_coding	Fbxl20	utr3	ENSMUSG00000020883	ProperStrand	47	1	-18.3525
chr17	39846049	39846098	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr15	100275358	100275437	SINE	PB1D10	Alu	chr15PB1D10100275332	ProperStrand	1	1	-inf
chr4	84780892	84780992	LINE	Lx8	L1	chr4Lx884780762	NonProperStrand	1	chr4	84781122	84781212	SINE	B4A	B4	chr4B4A84781042	ProperStrand	1	1	-inf
chrX	104406326	104406423	LINE	Lx2	L1	chrXLx2104405109	ProperStrand	5	chr17	39846952	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-9.1539
chr17	39847676	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	43975728	43975816	protein_coding	Dnmbp	utr5	ENSMUSG00000025195	ProperStrand	5	1	-3.2379
chr9	68790368	68790468	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	chr8	48430124	48430214	protein_coding	Stox2	intron	ENSMUSG00000038143	ProperStrand	98	1	-8.6056
chr9	106552730	106552820	protein_coding	Grm2	exon	ENSMUSG00000023192	ProperStrand	1	chr9	105909231	105909331	protein_coding	Col6a4	intron	ENSMUSG00000032572	ProperStrand	7	1	-inf
chr17	39842998	39843026	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr4	137480010	137480138	protein_coding	Ece1	intron	ENSMUSG00000057530	ProperStrand	325	2	-4.0471
chr4	43580547	43583278	protein_coding-noncoding	Gba2	utr3	ENSMUSG00000028467	NonProperStrand	12	chr4	43580879	43583413	protein_coding	Gba2	exon	ENSMUSG00000028467	NonProperStrand	27	12	-inf
chr15	73602179	73602272	protein_coding-noncoding	Gm628	utr3	ENSMUSG00000072487	ProperStrand	5	chr9	123461959	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr6	83608232	83608335	LTR	ORR1D1	MaLR	chr6ORR1D183608154	ProperStrand	3	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-12.9165
chr17	39847761	39847861	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	124798867	124798957	protein_coding	Leprel2	intron	ENSMUSG00000023191	ProperStrand	5	1	-3.2379
chr5	127605712	127605730	DNA	Kanga2_a	Tc2	chr5Kanga2_a127605591	ProperStrand	1	chr5	127606389	127606466	LTR	MTC	MaLR	chr5MTC127606392	NonProperStrand	1	1	-inf
chr8	3232161	3232201	protein_coding	Insr	intron	ENSMUSG00000005534	ProperStrand	62	chr3	86141772	86142542	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-11.0542
chr8	106208754	106208888	LTR	RLTR20B3	ERVK	chr8RLTR20B3106208462	ProperStrand	3	chr9	123462015	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr19	37309504	37309604	LINE	Lx8	L1	chr19Lx837309444	NonProperStrand	2	chr19	60773009	60773566	LTR	RLTR15	ERVK	chr19RLTR1560773423	NonProperStrand	4	2	-inf
chr17	4082116	4082192	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr13	70953518	70953604	protein_coding	Adamts16	intron	ENSMUSG00000049538	NonProperStrand	3	1	-14.0225
chr18	34279292	34289867	LTR	MamGypLTR2b	Gypsy	chr18MamGypLTR2b34279190	NonProperStrand	2	chr17	39843383	39843483	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	2	-inf
chr12	78350925	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr4	98924135	98924205	protein_coding	Atg4c	intron	ENSMUSG00000028550	ProperStrand	12	1	-9.1444
chr15	59004062	59004164	SINE	B1_Mus1	Alu	chr15B1_Mus159004077	ProperStrand	11	chr15	59003956	59004056	Simple_repeat	(TCCC)n	Simple_repeat	chr15(TCCC)n59003947	NonProperStrand	9	7	-inf
chr17	39847863	39847973	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	124260837	124260854	protein_coding	Cd163	intron	ENSMUSG00000008845	ProperStrand	1	1	-inf
chr8	36328053	36328153	LINE	L2a	L2	chr8L2a36327972	ProperStrand	1	chr8	48406255	48406345	protein_coding	Stox2	intron	ENSMUSG00000038143	ProperStrand	98	1	-inf
chr18	5647477	5647556	protein_coding	Zeb1	intron	ENSMUSG00000024238	ProperStrand	44	chr2	20805953	20805971	protein_coding	Arhgap21	intron	ENSMUSG00000036591	NonProperStrand	34	1	-13.7978
chr7	23623181	23623271	LINE	L1_Mus1	L1	chr7L1_Mus123623030	ProperStrand	1	chr7	23623585	23623685	LINE	Lx6	L1	chr7Lx623623358	NonProperStrand	1	1	-inf
chr4	3583462	3585114	lincRNA	2210414B05Rik	intron	ENSMUSG00000085394	ProperStrand	6	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr12	117214228	117214245	LINE	L1VL2	L1	chr12L1VL2117213771	NonProperStrand	1	chr1	138828039	138828055	protein_coding	Nr5a2	intron	ENSMUSG00000026398	NonProperStrand	6	1	-inf
chr18	35125760	35125848	LINE	L2c	L2	chr18L2c35125568	ProperStrand	1	chr18	35126766	35126823	SINE	B1_Mur3	Alu	chr18B1_Mur335126781	ProperStrand	2	1	-inf
chr5	93162182	93162223	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	chr5	30907654	30907705	protein_coding	Kcnk3	intron	ENSMUSG00000049265	NonProperStrand	23	1	-11.8981
chr17	39846998	39847029	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	127230559	127230646	LTR	MLT1L	MaLR	chr2MLT1L127230581	NonProperStrand	1	1	-inf
chr2	166080018	166080831	LTR	ORR1B1	MaLR	chr2ORR1B1166080007	ProperStrand	3	chr2	166079577	166080018	LTR	ORR1D2	MaLR	chr2ORR1D2166079410	ProperStrand	6	1	-inf
chrX	20805657	20805709	LINE	L1_Mus3	L1	chrXL1_Mus320804593	NonProperStrand	3	chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr3	142688294	142688317	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	2	chr17	39847230	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-inf
chr1	52211592	52211654	protein_coding	Stat1	intron	ENSMUSG00000026104	NonProperStrand	47	chr9	110281288	110281336	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.0514
chr18	59321514	59321604	LINE	Lx5	L1	chr18Lx559321469	NonProperStrand	1	chr18	59321385	59321485	LTR	RLTR20B2	ERVK	chr18RLTR20B259321016	ProperStrand	1	1	-inf
chr8	111769659	111769723	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	NonProperStrand	118	chr8	111773704	111773771	protein_coding	4922502B01Rik	utr5	ENSMUSG00000054165	ProperStrand	9	2	-21.3291
chr4	152299768	152300554	LTR	RLTR16	ERVK	chr4RLTR16152299749	NonProperStrand	1	chr4	152300543	152300643	SINE	B1_Mus1	Alu	chr4B1_Mus1152300473	ProperStrand	1	1	-inf
chr9	17987799	17987837	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr5	125006841	125006917	protein_coding	Ddx55	intron	ENSMUSG00000029389	NonProperStrand	14	1	-14.1055
chr6	6099696	6099772	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr12	78350925	78351011	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-3.4360
chr2	26635591	26635645	LTR	RMER15	ERVL	chr2RMER1526635506	NonProperStrand	1	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr14	100072722	100072786	LINE	Lx9	L1	chr14Lx9100072471	NonProperStrand	1	chr17	39846469	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	122087762	122087816	LINE	Lx9	L1	chr10Lx9122087541	ProperStrand	8	chr11	72396722	72396818	SINE	B3A	B2	chr11B3A72396652	NonProperStrand	7	2	-inf
chr6	3201470	3201536	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	44914715	44914797	protein_coding	Amica1	intron	ENSMUSG00000048534	NonProperStrand	6	1	-7.4430
chr2	181595281	181595297	SINE	B3	B2	chr2B3181595205	ProperStrand	1	chr4	129526389	129526517	protein_coding	Ptp4a2	utr3	ENSMUSG00000028788	NonProperStrand	36	1	-inf
chr17	87988192	87988258	LTR	RLTR19-int	ERVK	chr17RLTR19-int87987642	ProperStrand	4	chr9	123461959	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr9	78880090	78880190	LINE	Lx7	L1	chr9Lx778880022	ProperStrand	1	chr9	78880559	78880649	LINE	Lx7	L1	chr9Lx778880505	ProperStrand	1	1	-inf
chrY	823256	825456	LINE	L1Md_F2	L1	chrYL1Md_F2822000	NonProperStrand	1	chrY	825487	825690	LINE	L1Md_F2	L1	chrYL1Md_F2823891	NonProperStrand	1	1	-inf
chr10	40258543	40258599	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr17	25260845	25260944	protein_coding	Ptx4	intron	ENSMUSG00000044172	NonProperStrand	27	1	-6.9377
chr6	44993134	44993224	LINE	L1MB7	L1	chr6L1MB744993044	NonProperStrand	1	chr6	44993326	44993426	LINE	L1MB7	L1	chr6L1MB744993329	NonProperStrand	1	1	-inf
chr4	129075811	129075911	SINE	PB1D9	Alu	chr4PB1D9129075829	NonProperStrand	1	chr4	129075954	129076044	Simple_repeat	(TATG)n	Simple_repeat	chr4(TATG)n129075966	NonProperStrand	1	1	-inf
chr15	85872600	85872700	LTR	MLT1D	MaLR	chr15MLT1D85872613	NonProperStrand	3	chr15	85872515	85872605	SINE	B2_Mm2	B2	chr15B2_Mm285872523	ProperStrand	2	2	-inf
chr10	76158819	76158909	LINE	Lx8	L1	chr10Lx876158838	NonProperStrand	1	chr10	76159111	76159211	LTR	MTC	MaLR	chr10MTC76159014	ProperStrand	1	1	-inf
chrX	74225138	74225232	LINE	L1Md_F2	L1	chrXL1Md_F274224473	NonProperStrand	1	chr17	39846718	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr16	64831689	64831749	LINE	L3	CR1	chr16L364831645	ProperStrand	1	chr16	64813718	64813755	SINE	B2_Mm1t	B2	chr16B2_Mm1t64813701	NonProperStrand	1	1	-inf
chr1	55080321	55081143	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	chr3	90212686	90212744	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	1	-14.5825
chr3	90507914	90508048	LINE	Lx2A1	L1	chr3Lx2A190507799	ProperStrand	1	chr17	39847958	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	4954109	4954209	LINE	L1Md_F2	L1	chr9L1Md_F24952864	ProperStrand	2	chr9	4963721	4963811	LINE	L1Md_F3	L1	chr9L1Md_F34961809	ProperStrand	1	1	-inf
chr17	39847893	39847942	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	6062276	6062315	protein_coding	Znhit2-ps	exon	ENSMUSG00000092319	ProperStrand	1	1	-inf
chr13	84267711	84267748	LINE	L1MA6	L1	chr13L1MA684267553	ProperStrand	1	chr1	59871647	59871757	protein_coding	Bmpr2	intron	ENSMUSG00000067336	ProperStrand	65	1	-inf
chr3	119379281	119379300	LINE	L1_Mus3	L1	chr3L1_Mus3119377048	NonProperStrand	4	chr2	90395158	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-15.4057
chr8	86844187	86844239	LTR	RMER19B	ERVK	chr8RMER19B86843551	ProperStrand	11	chr13	48914900	48914947	protein_coding	Phf2	intron	ENSMUSG00000038025	ProperStrand	92	1	-14.6318
chr6	75219699	75219799	LINE	Lx7	L1	chr6Lx775219706	NonProperStrand	1	chr6	75219272	75219362	LTR	MTB_Mm	MaLR	chr6MTB_Mm75219285	NonProperStrand	1	1	-inf
chr3	25121477	25121567	LINE	L1Md_T	L1	chr3L1Md_T25121501	NonProperStrand	2	chr3	25121354	25121454	LINE	Lx9	L1	chr3Lx925121269	NonProperStrand	2	2	-inf
chrX	42661850	42661940	LINE	L1Md_F2	L1	chrXL1Md_F242661350	ProperStrand	1	chrX	42662342	42662442	LINE	L1Md_F2	L1	chrXL1Md_F242662152	ProperStrand	1	1	-inf
chr16	91469512	91469579	lincRNA	A930006K02Rik	intron	ENSMUSG00000084866	ProperStrand	3	chr1	176997375	176997452	protein_coding	Rgs7	intron	ENSMUSG00000026527	NonProperStrand	40	1	-19.2571
chr2	121936094	121936184	protein_coding	Spg11	intron	ENSMUSG00000033396	ProperStrand	10	chr9	108521344	108521444	protein_coding	Arih2	intron	ENSMUSG00000064145	NonProperStrand	62	1	-15.6325
chr6	71534758	71534858	LINE	L1M4c	L1	chr6L1M4c71534745	ProperStrand	3	chr6	71534660	71534750	LTR	RMER20B	ERVK	chr6RMER20B71534318	ProperStrand	3	3	-inf
chr13	23555719	23555805	protein_coding	Btn1a1	utr3	ENSMUSG00000000706	NonProperStrand	212	chr5	27489229	27489298	protein_coding	Dpp6	intron	ENSMUSG00000061576	ProperStrand	96	1	-8.5505
chr17	39847648	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	90906231	90906274	protein_coding	Psmc3	utr3	ENSMUSG00000002102	ProperStrand	1	1	-inf
chr11	60343367	60343502	DNA	URR1B	MER1_type	chr11URR1B60343364	ProperStrand	1	chr17	39847531	39847549	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	59430328	59430350	protein_coding	Susd1	intron	ENSMUSG00000038578	ProperStrand	13	chr18	80415540	80415678	protein_coding	Txnl4a	intron	ENSMUSG00000057130	NonProperStrand	74	1	-14.7235
chr17	39846351	39847045	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	115811453	115811485	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	6	-3.6369
chr2	22744842	22744919	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr10	121370696	121370740	protein_coding	Srgap1	intron	ENSMUSG00000020121	NonProperStrand	108	1	-5.6508
chr17	94764821	94764913	LINE	L1_Mus3	L1	chr17L1_Mus394764195	ProperStrand	19	chr9	123461957	123461989	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.1531
chr1	88361984	88365041	SINE	B1F2	Alu	chr1B1F288361965	NonProperStrand	1	chr1	88362134	88362224	SINE	RSINE1	B4	chr1RSINE188362080	NonProperStrand	1	1	-inf
chr3	99171594	99171637	LINE	L1Md_F	L1	chr3L1Md_F99170362	ProperStrand	4	chr9	55240253	55240358	protein_coding	AI118078	intron	ENSMUSG00000032313	NonProperStrand	12	1	-22.2547
chr12	67665666	67665766	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chrX	92630874	92630964	protein_coding	Fam123b	intron	ENSMUSG00000050332	NonProperStrand	1	1	-inf
chr11	109011828	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	87426746	87426881	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-5.9120
chr6	122606920	122607020	LTR	RLTR22_Mur	ERVK	chr6RLTR22_Mur122606949	ProperStrand	10	chr6	122607029	122607119	SINE	B2_Mm2	B2	chr6B2_Mm2122607052	NonProperStrand	11	10	-inf
chr14	123289283	123289383	protein_coding-noncoding	Pcca	utr5	ENSMUSG00000041650	ProperStrand	1	chr14	123288773	123288863	protein_coding	Pcca	utr3	ENSMUSG00000041650	ProperStrand	10	1	-inf
chr16	11143902	11144004	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.1726
chr4	55880676	55880776	LINE	L1Md_F2	L1	chr4L1Md_F255880606	ProperStrand	2	chr4	55880522	55880612	LINE	L1_Mm	L1	chr4L1_Mm55880520	NonProperStrand	1	1	-inf
chr13	65868713	65868813	LINE	Lx4B	L1	chr13Lx4B65867524	ProperStrand	1	chr13	65442700	65442790	Unknown	MurSatRep1	Unknown	chr13MurSatRep165442244	ProperStrand	1	1	-inf
chr4	51753271	51753371	LINE	Lx7	L1	chr4Lx751753171	NonProperStrand	1	chr4	51753570	51753660	LINE	Lx7	L1	chr4Lx751753523	NonProperStrand	1	1	-inf
chr17	39847743	39847855	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	26941261	26941277	protein_coding	Jam3	intron	ENSMUSG00000031990	ProperStrand	2	1	-5.4040
chr2	156148301	156148324	miRNA	AL929404.1	.	ENSMUSG00000076231	NonProperStrand	1	chr2	156148180	156148302	pseudogene	Gm14251	.	ENSMUSG00000081751	NonProperStrand	1	1	-inf
chr8	13749433	13749523	LTR	MTC-int	MaLR	chr8MTC-int13749448	ProperStrand	6	chr8	13749301	13749401	LTR	RLTR27	ERVK	chr8RLTR2713749156	ProperStrand	6	6	-inf
chr12	73104021	73104099	LTR	RLTR14-int	ERV1	chr12RLTR14-int73103692	NonProperStrand	4	chr17	39847274	39847334	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr17	39846207	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	94200577	94270346	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	6	-3.6369
chr8	122621621	122621653	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	chr8	122619901	122620024	sense_intronic	Gm15898	.	ENSMUSG00000089742	ProperStrand	4	1	-12.5924
chr3	146767716	146767772	LTR	MLT2B2	ERVL	chr3MLT2B2146767639	ProperStrand	1	chr9	40803581	40803629	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr9	78480348	78480386	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr5	100654878	100654906	pseudogene	Gm8091	.	ENSMUSG00000085915	ProperStrand	92	1	-6.6583
chr17	39847330	39848101	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	39846526	39848575	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1256	-inf
chr8	4915795	4915895	LTR	MTE2a	MaLR	chr8MTE2a4915537	ProperStrand	1	chr8	4915928	4916018	LTR	RLTR15	ERVK	chr8RLTR154915867	NonProperStrand	1	1	-inf
chr7	68034673	68034719	LINE	Lx3_Mus	L1	chr7Lx3_Mus68034309	ProperStrand	11	chr1	153889957	153889993	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	ProperStrand	8	1	-20.0979
chr13	100676122	100676222	LINE	L1MD	L1	chr13L1MD100676060	ProperStrand	1	chr13	67749180	67749270	LTR	MMERGLN-int	ERV1	chr13MMERGLN-int67742956	NonProperStrand	3	1	-inf
chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	9626133	9626151	protein_coding	Spef2	intron	ENSMUSG00000072663	NonProperStrand	8	1	-3.3803
chr14	47659622	47659722	protein_coding	Samd4	intron	ENSMUSG00000021838	ProperStrand	53	chr9	65829754	65829845	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	ProperStrand	13	1	-15.4027
chr14	19927244	19927282	LINE	L1Md_T	L1	chr14L1Md_T19927177	NonProperStrand	10	chr8	61233239	61233329	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-13.2929
chr9	36713388	36713687	protein_coding	Pknox2	intron	ENSMUSG00000035934	ProperStrand	37	chr9	114528694	114528729	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-8.9817
chr5	92831099	92831216	protein_coding	Art3	intron	ENSMUSG00000034842	ProperStrand	42	chr13	97190561	97190597	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8202
chr4	43492808	43492875	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr6	8717136	8717213	protein_coding	Ica1	intron	ENSMUSG00000062995	ProperStrand	18	1	-9.5218
chr1	118683921	118684065	LTR	RLTR12B	ERVK	chr1RLTR12B118683891	NonProperStrand	5	chr1	118683775	118683874	Simple_repeat	(TCTCCC)n	Simple_repeat	chr1(TCTCCC)n118683782	ProperStrand	5	2	-inf
chr1	5065280	5065370	LINE	Lx8	L1	chr1Lx85065241	ProperStrand	1	chr1	5065749	5065849	LTR	RLTR20B3	ERVK	chr1RLTR20B35065584	NonProperStrand	1	1	-inf
chr9	66515121	66515179	DNA	Charlie4a	MER1_type	chr9Charlie4a66515078	NonProperStrand	1	chr17	39847767	39847865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr18	75071681	75071781	LINE	Lx7	L1	chr18Lx775071665	ProperStrand	3	chr18	75071571	75071661	LTR	RLTR40	ERVK	chr18RLTR4075071547	ProperStrand	3	3	-inf
chr12	82772580	82772670	LINE	L1M4	L1	chr12L1M482771992	ProperStrand	2	chr12	82773022	82773122	LTR	ORR1E	MaLR	chr12ORR1E82772875	NonProperStrand	1	1	-inf
chr3	10984555	10984645	LINE	L1M4	L1	chr3L1M410984281	ProperStrand	1	chr3	10984917	10985017	LINE	L1M4	L1	chr3L1M410984834	ProperStrand	1	1	-inf
chr17	39846635	39846673	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	78465586	78465634	LTR	RMER17A2	ERVK	chrXRMER17A278465258	ProperStrand	1	1	-inf
chr2	30120759	30120849	protein_coding	Lrrc8a	intron	ENSMUSG00000007476	ProperStrand	6	chr2	71670353	71670453	protein_coding	Itga6	intron	ENSMUSG00000027111	ProperStrand	13	1	-inf
chr8	109142017	109142107	protein_coding	Cdh1	intron	ENSMUSG00000000303	ProperStrand	54	chr8	124313150	124313250	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	5	-22.3253
chr8	13351655	13351720	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	chr3	122276795	122278809	protein_coding	Fnbp1l	intron	ENSMUSG00000039735	NonProperStrand	30	1	-10.7109
chr1	52459103	52459193	LINE	L1Md_T	L1	chr1L1Md_T52456764	ProperStrand	1	chr2	19965951	19966051	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-inf
chr12	102621670	102621721	LINE	Lx3_Mus	L1	chr12Lx3_Mus102620675	ProperStrand	38	chrX	104295994	104299821	protein_coding	P2ry10	utr3	ENSMUSG00000050921	NonProperStrand	6	1	-17.9215
chr14	30571004	30571172	LTR	MLT1E3	MaLR	chr14MLT1E330570757	NonProperStrand	4	chr14	30572324	30573416	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n30572455	ProperStrand	3	1	-inf
chr5	132502634	132502743	protein_coding-noncoding	Auts2	utr3	ENSMUSG00000029673	ProperStrand	7	chr5	132501790	132501824	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	2	-18.6606
chr8	116619151	116619224	LINE	Lx7	L1	chr8Lx7116619119	ProperStrand	1	chr13	51202927	51203010	protein_coding	Spin1	intron	ENSMUSG00000021395	NonProperStrand	3	1	-inf
chr14	116969961	116970051	LINE	L1_Mus1	L1	chr14L1_Mus1116969135	ProperStrand	1	chr14	116970064	116970164	LINE	Lx2B	L1	chr14Lx2B116970071	ProperStrand	1	1	-inf
chr11	12411177	12411282	LTR	IAPEz-int	ERVK	chr11IAPEz-int12410918	ProperStrand	10	chr11	12412409	12412439	LTR	IAPLTR1_Mm	ERVK	chr11IAPLTR1_Mm12412266	ProperStrand	1	1	-inf
chr11	100709104	100709425	protein_coding	Stat5b	intron	ENSMUSG00000020919	ProperStrand	21	chr1	87791222	87791257	protein_coding	Itm2c	utr5	ENSMUSG00000026223	ProperStrand	13	1	-17.3134
chr2	103765157	103765182	LTR	MTD	MaLR	chr2MTD103764952	ProperStrand	1	chr9	123462079	123462150	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	113884020	113884073	protein_coding	Atp2b2	intron	ENSMUSG00000030302	ProperStrand	88	chr7	116187550	116187593	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-10.0906
chr11	62552530	62552925	LINE	L1M2	L1	chr11L1M262551810	NonProperStrand	43	chr14	46084419	46084744	protein_coding	Fermt2	exon	ENSMUSG00000037712	NonProperStrand	4	4	-inf
chrX	166411015	166411115	protein_coding-noncoding	Mid1	utr5	ENSMUSG00000035299	NonProperStrand	1	chrX	166411321	166411411	protein_coding	Mid1	intron	ENSMUSG00000035299	NonProperStrand	17	1	-inf
chr17	39847445	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	122828398	122828474	protein_coding	Necap1	intron	ENSMUSG00000030327	ProperStrand	5	1	-3.2379
chr5	146308572	146308645	LINE	L1_Mus1	L1	chr5L1_Mus1146306721	ProperStrand	1	chr4	45346534	45346554	protein_coding	Exosc3	intron	ENSMUSG00000028322	ProperStrand	19	1	-inf
chr15	84831214	84831305	SINE	B4	B4	chr15B484831200	NonProperStrand	1	chr3	89430704	89431136	protein_coding	Kcnn3	intron	ENSMUSG00000000794	ProperStrand	88	1	-inf
chr10	8800124	8800170	LINE	L1_Mus1	L1	chr10L1_Mus18799846	NonProperStrand	1	chr10	8800382	8800461	LTR	MTB_Mm	MaLR	chr10MTB_Mm8800333	NonProperStrand	1	1	-inf
chr9	107312378	107312468	protein_coding	Cacna2d2	intron	ENSMUSG00000010066	ProperStrand	6	chr9	113953039	113953139	protein_coding	Fbxl2	intron	ENSMUSG00000032507	NonProperStrand	56	1	-16.9101
chr17	39847874	39847972	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	90388855	90388875	SINE	MIRb	MIR	chr3MIRb90388775	NonProperStrand	2	1	-5.4040
chr17	39847505	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	47186342	47186367	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n47186346	NonProperStrand	1	1	-inf
chr6	3201485	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	90224393	90225205	protein_coding	Sod1	intron	ENSMUSG00000022982	ProperStrand	43	1	-3.4992
chr3	94755669	94755769	LTR	RMER19B	ERVK	chr3RMER19B94755212	ProperStrand	1	chr3	94755787	94755877	LTR	RMER19B	ERVK	chr3RMER19B94755760	ProperStrand	1	1	-inf
chr16	35981617	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr6	140446356	140446461	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	1	-7.3578
chrX	70345220	70345310	processed_transcript	Gm20455	.	ENSMUSG00000092255	NonProperStrand	5	chr11	93898402	93898502	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	1	-16.6748
chr5	4923973	4923991	protein_coding	Cdk14	intron	ENSMUSG00000028926	ProperStrand	13	chr8	80839020	80839103	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-10.3884
chr8	108811767	108811805	lincRNA	Gm10629	intron	ENSMUSG00000074113	ProperStrand	11	chr19	5801931	5801979	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-7.8223
chr9	17987799	17987836	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr8	78086915	78086946	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-7.0598
chr17	39845588	39845663	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr5	30770272	30770337	protein_coding	1700001C02Rik	intron	ENSMUSG00000029182	ProperStrand	9	1	-5.8320
chr8	22477190	22477280	LINE	L1_Mus1	L1	chr8L1_Mus122473255	ProperStrand	4	chr8	22477451	22477551	LINE	L1_Mus1	L1	chr8L1_Mus122477327	ProperStrand	3	2	-inf
chr17	39848492	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	5074638	5074737	LINE	Lx6	L1	chr7Lx65072678	NonProperStrand	8	1	-5.4397
chr17	39847866	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	131087035	131087134	LTR	ORR1A0	MaLR	chr1ORR1A0131086924	ProperStrand	1	1	-inf
chrX	73822974	73823068	LINE	Lx9	L1	chrXLx973822660	NonProperStrand	4	chr17	39846932	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr19	29069658	29069684	protein_coding	Cdc37l1	exon	ENSMUSG00000024780	ProperStrand	8	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.6863
chr19	55587886	55587976	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	chr19	18721083	18721183	protein_coding	BC016495	intron	ENSMUSG00000037847	NonProperStrand	2	1	-16.4562
chr2	5379266	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr3	108296710	108296740	protein_coding	5330417C22Rik	intron	ENSMUSG00000040412	NonProperStrand	43	1	-5.1924
chr6	72742707	72742743	LTR	MLT1D	MaLR	chr6MLT1D72742564	ProperStrand	1	chr8	27141796	27141840	protein_coding	Hook3	utr3	ENSMUSG00000037234	ProperStrand	117	1	-inf
chr15	66949963	66950063	LTR	ORR1E	MaLR	chr15ORR1E66949951	NonProperStrand	1	chr15	66950109	66950199	LTR	ORR1E	MaLR	chr15ORR1E66950097	NonProperStrand	1	1	-inf
chr5	140175705	140175841	Satellite	ZP3AR	Satellite	chr5ZP3AR140175708	ProperStrand	6	chr1	59543706	59543723	protein_coding	Fzd7	utr3	ENSMUSG00000041075	NonProperStrand	8	1	-inf
chr13	99479661	99479761	LINE	Lx9	L1	chr13Lx999479628	ProperStrand	6	chr13	99479781	99479873	SINE	PB1D9	Alu	chr13PB1D999479772	ProperStrand	1	1	-inf
chr4	116074885	116074969	protein_coding	Mast2	intron	ENSMUSG00000003810	ProperStrand	73	chr2	128824395	128824442	protein_coding	Zc3h6	intron	ENSMUSG00000042851	ProperStrand	27	1	-13.2453
chr12	108927117	108927256	SINE	B4A	B4	chr12B4A108927087	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr7	3096374	3096474	LINE	L1_Mur2	L1	chr7L1_Mur23096277	ProperStrand	1	chr7	3096659	3096749	LINE	L1_Mur2	L1	chr7L1_Mur23096523	ProperStrand	1	1	-inf
chr13	37979562	37979650	protein_coding	Rreb1	intron	ENSMUSG00000039087	NonProperStrand	39	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-12.6702
chr5	39910385	39910485	LINE	L1M2	L1	chr5L1M239910308	ProperStrand	1	chr5	39910556	39910646	Other	RMER1B	Other	chr5RMER1B39910482	ProperStrand	1	1	-inf
chr3	43763964	43764002	LINE	L1Md_A	L1	chr3L1Md_A43763366	NonProperStrand	1	chr9	59679222	59679270	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr3	50190927	50191017	protein_coding	Slc7a11	intron	ENSMUSG00000027737	ProperStrand	4	chr8	16399104	16399204	protein_coding	Csmd1	intron	ENSMUSG00000060924	ProperStrand	35	1	-18.9655
chrX	7882687	7882731	LINE	Lx	L1	chrXLx7882582	NonProperStrand	1	chr14	48800058	48800143	protein_coding	Peli2	intron	ENSMUSG00000021846	ProperStrand	8	1	-inf
chr4	3835079	3835147	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr2	5379265	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.5482
chr1	156845061	156845157	LTR	MTE-int	MaLR	chr1MTE-int156845073	ProperStrand	1	chr6	3201470	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr15	53212922	53212977	LINE	L1_Mur3	L1	chr15L1_Mur353212741	ProperStrand	1	chr15	53214803	53214894	LINE	L1_Mur3	L1	chr15L1_Mur353214597	ProperStrand	3	1	-inf
chr8	114594363	114594455	LINE	L1MC5	L1	chr8L1MC5114594257	NonProperStrand	1	chr8	114594995	114595051	SINE	B2_Mm1t	B2	chr8B2_Mm1t114594988	NonProperStrand	1	1	-inf
chr17	39847271	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	75157438	75206094	protein_coding	Igf1r	intron	ENSMUSG00000005533	ProperStrand	8	1	-3.3803
chr17	39845923	39845979	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr12	103598243	103600374	protein_coding	Rin3	utr3	ENSMUSG00000044456	NonProperStrand	4	1	-7.2834
chr14	25768493	25768556	LTR	MTD	MaLR	chr14MTD25768279	NonProperStrand	1	chr11	69073537	69073563	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	1	-inf
chr1	143651461	143651489	LINE	Lx7	L1	chr1Lx7143651463	NonProperStrand	1	chr9	18311679	18311708	protein_coding	Muc16	intron	ENSMUSG00000032134	NonProperStrand	9	1	-inf
chr19	7938016	7938106	LINE	L1_Mus2	L1	chr19L1_Mus27937956	NonProperStrand	1	chr3	41792357	41792457	LINE	L1Md_F2	L1	chr3L1Md_F241789650	NonProperStrand	1	1	-inf
chr17	39843563	39843582	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	108493346	108493375	protein_coding	Btf3l4	intron	ENSMUSG00000028568	NonProperStrand	6	1	-7.0670
chr14	54417749	54417857	LTR	RMER19B	ERVK	chr14RMER19B54416962	ProperStrand	4	chr17	39847207	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr2	61801788	61801871	LINE	L1Md_T	L1	chr2L1Md_T61797450	NonProperStrand	2	chr2	22744846	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-14.2543
chr11	102479014	102479060	LTR	MLT1H1	MaLR	chr11MLT1H1102478928	NonProperStrand	1	chr7	90887405	90887427	protein_coding	Il16	intron	ENSMUSG00000001741	NonProperStrand	2	1	-inf
chr7	96719569	96719616	LTR	IAPEz-int	ERVK	chr7IAPEz-int96717444	NonProperStrand	8	chr7	96721596	96721663	LTR	IAPEz-int	ERVK	chr7IAPEz-int96720714	NonProperStrand	2	1	-inf
chr5	107188557	107188573	LINE	Lx3B	L1	chr5Lx3B107188487	ProperStrand	5	chr17	39847174	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr15	103211296	103211332	SINE	B4A	B4	chr15B4A103211161	NonProperStrand	1	chr15	103210860	103210948	SINE	PB1D10	Alu	chr15PB1D10103210884	NonProperStrand	1	1	-inf
chr1	33897824	33897915	LTR	ORR1A1-int	MaLR	chr1ORR1A1-int33896646	ProperStrand	1	chr1	33892835	33892862	pseudogene	Gm15455	.	ENSMUSG00000081402	ProperStrand	1	1	-inf
chr7	49039246	49039336	LINE	L1_Mus3	L1	chr7L1_Mus349039187	ProperStrand	1	chr7	49039054	49039154	LINE	L1_Mus4	L1	chr7L1_Mus449038358	ProperStrand	1	1	-inf
chr4	134744207	134744307	LTR	IAPEz-int	ERVK	chr4IAPEz-int134743286	NonProperStrand	5	chr4	134744349	134744439	LTR	IAPLTR1a_Mm	ERVK	chr4IAPLTR1a_Mm134744372	NonProperStrand	3	3	-inf
chr7	25513801	25513901	LINE	L1MA8	L1	chr7L1MA825513797	NonProperStrand	3	chr7	25513642	25513733	SINE	ID_B1	B4	chr7ID_B125513522	NonProperStrand	3	3	-inf
chr17	39848165	39848185	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	74323091	74323149	protein_coding	Exoc3	intron	ENSMUSG00000034152	ProperStrand	24	1	-3.0353
chr10	34185023	34185053	LINE	L1_Mur3	L1	chr10L1_Mur334185016	ProperStrand	1	chr10	34185936	34186035	LINE	L1_Mur3	L1	chr10L1_Mur334185808	ProperStrand	1	1	-inf
chr7	101999059	101999149	LTR	RLTR25B	ERVK	chr7RLTR25B101998921	NonProperStrand	6	chr7	101999156	101999256	LTR	RLTR25B	ERVK	chr7RLTR25B101999170	NonProperStrand	5	4	-inf
chr13	87178739	87178839	LINE	L1Md_F2	L1	chr13L1Md_F287178298	ProperStrand	1	chr13	87178967	87179057	LINE	L1_Mus2	L1	chr13L1_Mus287178909	ProperStrand	1	1	-inf
chr8	124944498	124944598	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	chr16	23110837	23110927	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-6.0855
chr4	34878829	34878919	LTR	RLTR17	ERVK	chr4RLTR1734878695	NonProperStrand	1	chr4	34878099	34878199	Simple_repeat	(CATATA)n	Simple_repeat	chr4(CATATA)n34877840	NonProperStrand	1	1	-inf
chr11	12449228	12449262	LINE	L1Md_F2	L1	chr11L1Md_F212448415	NonProperStrand	4	chr11	12451954	12452059	LINE	L1Md_F2	L1	chr11L1Md_F212451538	NonProperStrand	3	1	-inf
chr1	118474968	118475058	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	NonProperStrand	63	chr1	118477382	118477482	protein_coding	Cntnap5a	utr3	ENSMUSG00000070695	ProperStrand	130	1	-10.3718
chr9	123461905	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	160371524	160588865	protein_coding	Astn1	intron	ENSMUSG00000026587	NonProperStrand	77	3	-3.0807
chr10	83460722	83460807	LTR	MTD	MaLR	chr10MTD83460529	NonProperStrand	3	chr17	39846941	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr8	122397241	122397324	protein_coding	Klhl36	intron	ENSMUSG00000031828	ProperStrand	25	chr15	6750305	6750378	protein_coding	Rictor	utr3	ENSMUSG00000050310	ProperStrand	30	1	-15.2030
chr13	21780032	21780099	LINE	L1Md_T	L1	chr13L1Md_T21779280	ProperStrand	36	chr2	118638524	118639658	LTR	RMER4B	ERVK	chr2RMER4B118638536	NonProperStrand	1	1	-inf
chr6	48688425	48688515	antisense	Gm3345	.	ENSMUSG00000044867	ProperStrand	1	chr6	48688305	48688405	protein_coding	Gimap1	intron	ENSMUSG00000090019	NonProperStrand	1	1	-inf
chr17	39848311	39848379	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	15484080	15484133	LTR	MYSERV16_I-int	ERVK	chr17MYSERV16_I-int15483671	NonProperStrand	1	1	-inf
chr13	21780481	21780566	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr2	5379264	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.1924
chr1	92160926	92161026	LINE	L1M2	L1	chr1L1M292160671	NonProperStrand	1	chr1	92161065	92161155	LINE	Lx7	L1	chr1Lx792161020	NonProperStrand	2	1	-inf
chr19	12780607	12780697	antisense	Gm15962	.	ENSMUSG00000084981	ProperStrand	25	chr19	12780495	12780595	protein_coding	Keg1	intron	ENSMUSG00000024694	NonProperStrand	8	1	-17.9363
chr11	58311566	58314051	LTR	MYSERV-int	ERVK	chr11MYSERV-int58313037	ProperStrand	2	chr11	58314058	58314269	LTR	MYSERV-int	ERVK	chr11MYSERV-int58313188	ProperStrand	13	2	-inf
chr15	8116156	8116264	LINE	Lx2	L1	chr15Lx28115518	ProperStrand	2	chr9	78377146	78377194	SINE	B1_Mm	Alu	chr9B1_Mm78377150	ProperStrand	2	2	-inf
chr8	41375185	41375269	protein_coding	Fgf20	intron	ENSMUSG00000031603	NonProperStrand	2	chr2	5379293	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr7	79695017	79695055	LINE	L1_Mus1	L1	chr7L1_Mus179694883	ProperStrand	3	chr5	118589897	118589924	protein_coding	Fbxw8	intron	ENSMUSG00000032867	NonProperStrand	108	1	-17.2018
chr1	9940616	9940706	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr2	73173336	73173436	protein_coding	Scrn3	intron	ENSMUSG00000008226	NonProperStrand	24	2	-20.3353
chr11	76199712	76199816	protein_coding	Nxn	intron	ENSMUSG00000020844	ProperStrand	42	chr1	84068924	84068961	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	1	-10.9566
chr18	34750631	34750712	protein_coding	4933408B17Rik	intron	ENSMUSG00000049357	ProperStrand	5	chr7	28293791	28293837	protein_coding	Prx	intron	ENSMUSG00000053198	NonProperStrand	9	1	-inf
chr2	60021275	60021321	protein_coding	Baz2b	intron	ENSMUSG00000026987	ProperStrand	70	chr17	86779371	86779427	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	1	-9.8737
chr2	102829380	102829444	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr2	167446942	167446985	protein_coding	Ube2v1	intron	ENSMUSG00000078923	NonProperStrand	62	1	-9.8093
chr7	128427242	128427332	SINE	B4A	B4	chr7B4A128427021	NonProperStrand	4	chr7	128427435	128427536	SINE	B4A	B4	chr7B4A128427462	ProperStrand	4	4	-inf
chr3	65220569	65220588	LTR	ORR1C1	MaLR	chr3ORR1C165220546	NonProperStrand	1	chr18	35599092	35599194	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-inf
chr2	109968237	109968264	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	chr5	36902590	36902665	protein_coding	Tbc1d14	intron	ENSMUSG00000029192	NonProperStrand	154	1	-7.2512
chr16	30564958	30582643	protein_coding-noncoding	Lsg1	utr3	ENSMUSG00000022538	ProperStrand	5	chr16	30569226	30585633	protein_coding	Lsg1	intron	ENSMUSG00000022538	ProperStrand	31	4	-inf
chr13	69629622	69629655	LTR	RMER13A	ERVK	chr13RMER13A69628876	NonProperStrand	7	chr11	8546880	8546946	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	1	-12.3637
chr3	96270144	96270192	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr9	123461802	123461984	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-3.6303
chr13	104191046	104191071	LINE	L1Md_A	L1	chr13L1Md_A104190823	ProperStrand	3	chr17	39845404	39845439	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	1	-8.2800
chr4	74301443	74301495	LINE	L1Md_F2	L1	chr4L1Md_F274300597	NonProperStrand	5	chr17	39847101	39847163	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr13	97190591	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr14	64962471	64962568	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	1	-3.3206
chr16	18794197	18794280	protein_coding	Cdc45	intron	ENSMUSG00000000028	ProperStrand	28	chr7	116296523	116296552	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	1	-11.4973
chr17	39847206	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	24165776	24165803	LTR	ORR1E	MaLR	chr19ORR1E24165585	ProperStrand	1	1	-inf
chr16	80408739	80408829	LTR	RLTR18B	ERVK	chr16RLTR18B80408634	ProperStrand	1	chr16	80408967	80409067	LTR	RLTR18B	ERVK	chr16RLTR18B80408756	ProperStrand	1	1	-inf
chr4	132352454	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr16	17041032	17041115	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	1	-8.9627
chr8	64998608	64998626	LINE	L1_Mur3	L1	chr8L1_Mur364998290	ProperStrand	6	chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-12.6313
chr6	71963897	71963987	DNA	Kanga2_a	Tc2	chr6Kanga2_a71963907	ProperStrand	1	chr6	71963583	71963683	SINE	B4	B4	chr6B471963485	ProperStrand	1	1	-inf
chr8	106236815	106236905	LINE	Lx7	L1	chr8Lx7106236712	ProperStrand	7	chr16	35464866	35464966	protein_coding	Pdia5	intron	ENSMUSG00000022844	ProperStrand	150	3	-inf
chr12	30368187	30368276	protein_coding	Myt1l	intron	ENSMUSG00000061911	NonProperStrand	10	chr15	75862476	75863416	protein_coding	K230010J24Rik	intron	ENSMUSG00000075594	ProperStrand	9	1	-20.1232
chr19	46064350	46064380	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	NonProperStrand	78	chrX	101699657	101699738	protein_coding	Uprt	exon	ENSMUSG00000073016	ProperStrand	28	1	-13.0371
chr11	109011746	109011768	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	119999920	120000049	protein_coding	Slc38a10	intron	ENSMUSG00000061306	NonProperStrand	60	1	-6.0996
chr5	146261070	146261101	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	127304281	127304345	protein_coding	BC089597	intron	ENSMUSG00000074639	NonProperStrand	13	1	-8.1236
chr1	189902093	189902140	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	103	chr1	180898161	180898218	protein_coding	Smyd3	intron	ENSMUSG00000055067	NonProperStrand	144	1	-9.1813
chr6	34338852	34338942	protein_coding-noncoding	Akr1b10	utr5	ENSMUSG00000061758	NonProperStrand	1	chr6	34338463	34338563	protein_coding	Akr1b10	intron	ENSMUSG00000061758	NonProperStrand	8	1	-inf
chr14	122828537	122828581	LINE	L1_Mus4	L1	chr14L1_Mus4122828171	NonProperStrand	1	chr14	122828934	122829019	SINE	B1_Mus2	Alu	chr14B1_Mus2122828879	ProperStrand	1	1	-inf
chr14	19278161	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr16	35630297	35630386	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	1	-9.3114
chr10	40258543	40258593	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	138263674	138263734	protein_coding	Btbd3	intron	ENSMUSG00000062098	ProperStrand	66	1	-5.1712
chr13	38328956	38329056	LINE	L1MA5A	L1	chr13L1MA5A38328704	NonProperStrand	1	chr13	38328389	38328479	LTR	RMER10A	ERVL	chr13RMER10A38328098	NonProperStrand	1	1	-inf
chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	102767299	102767345	protein_coding	Wdr78	intron	ENSMUSG00000035126	NonProperStrand	5	1	-5.8308
chrX	12801863	12801892	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr16	22855035	22855160	protein_coding	Tbccd1	intron	ENSMUSG00000004462	ProperStrand	21	1	-14.4384
chr8	105539322	105539370	LINE	L1Md_F2	L1	chr8L1Md_F2105539111	NonProperStrand	3	chr17	39847767	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr7	135000391	135000481	LINE	Lx5	L1	chr7Lx5135000373	ProperStrand	2	chr7	135000515	135000615	misc_RNA	AC149222.1	.	ENSMUSG00000093020	ProperStrand	2	2	-inf
chr17	39847701	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	71557232	71557257	LTR	MLT1D	MaLR	chr1MLT1D71557213	NonProperStrand	3	3	-inf
chr1	75196658	75198116	protein_coding-noncoding	Glb1l	utr3	ENSMUSG00000026200	NonProperStrand	4	chr1	75196515	75198009	protein_coding	Glb1l	exon	ENSMUSG00000026200	NonProperStrand	13	4	-inf
chr4	96192039	96192090	protein_coding	Cyp2j6	intron	ENSMUSG00000052914	NonProperStrand	2	chr4	148026057	148026149	protein_coding	Gm572	intron	ENSMUSG00000070577	NonProperStrand	43	2	-inf
chr18	31841000	31841119	protein_coding	Sap130	intron	ENSMUSG00000024260	ProperStrand	80	chr17	47682155	47682193	protein_coding	Ccnd3	intron	ENSMUSG00000034165	ProperStrand	70	1	-11.1337
chr3	65380015	65380068	SINE	B2_Mm2	B2	chr3B2_Mm265380029	NonProperStrand	1	chr1	167367899	167368001	protein_coding	Dcaf6	intron	ENSMUSG00000026571	NonProperStrand	57	1	-inf
chr3	129824948	129825048	LINE	L1MC4	L1	chr3L1MC4129824949	ProperStrand	1	chr3	129825107	129825197	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n129825121	NonProperStrand	1	1	-inf
chr13	112578194	112578257	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr8	107373292	107373351	protein_coding	Ces2c	intron	ENSMUSG00000061825	ProperStrand	15	1	-6.9396
chr4	106851250	106851340	protein_coding	2210012G02Rik	intron	ENSMUSG00000028619	ProperStrand	16	chr17	5267105	5267205	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	4	-inf
chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	chr19	25505944	25506003	protein_coding	Kank1	intron	ENSMUSG00000032702	ProperStrand	85	1	-11.9476
chr18	38740838	38740928	LINE	L1MD3	L1	chr18L1MD338740752	ProperStrand	1	chr18	38740594	38740694	SINE	B3	B2	chr18B338740538	ProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr2	32735574	32735701	protein_coding	Fam129b	intron	ENSMUSG00000026796	ProperStrand	30	1	-11.2076
chr12	102493799	102495729	LINE	L1_Mus1	L1	chr12L1_Mus1102493192	NonProperStrand	1	chr12	102495727	102497510	LTR	MT2A	ERVL	chr12MT2A102497348	ProperStrand	1	1	-inf
chr17	39846726	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	103173378	103173414	LTR	ORR1A4-int	MaLR	chr3ORR1A4-int103172231	NonProperStrand	2	1	-5.3533
chr1	106302728	106302818	LTR	IAP-d-int	ERVK	chr1IAP-d-int106301352	ProperStrand	3	chr1	131935082	131935182	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-15.3372
chr17	4519782	4519872	SINE	B4A	B4	chr17B4A4519738	ProperStrand	1	chr17	4519658	4519758	Simple_repeat	(TATATG)n	Simple_repeat	chr17(TATATG)n4519600	NonProperStrand	1	1	-inf
chr2	165817464	165817564	lincRNA	Gm11464	intron	ENSMUSG00000087351	NonProperStrand	32	chr2	165818248	165818338	protein_coding	Ncoa3	utr5	ENSMUSG00000027678	ProperStrand	21	1	-15.4234
chr3	8928258	8928312	SINE	B3A	B2	chr3B3A8928185	NonProperStrand	1	chr3	8900159	8923611	protein_coding	Mrps28	exon	ENSMUSG00000040269	ProperStrand	70	1	-inf
chr9	21138831	21138921	SINE	B1F2	Alu	chr9B1F221138807	ProperStrand	1	chr9	21138723	21138823	SINE	B2_Mm2	B2	chr9B2_Mm221138615	NonProperStrand	1	1	-inf
chr15	81174334	81174403	protein_coding	Slc25a17	intron	ENSMUSG00000022404	ProperStrand	110	chr9	118733128	118733214	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-8.2695
chr11	116757693	116757740	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr10	59948402	59948451	protein_coding	Cdh23	intron	ENSMUSG00000012819	ProperStrand	124	1	-11.1899
chr9	99119467	99119557	LINE	L1MA5	L1	chr9L1MA599119447	ProperStrand	2	chr9	99119371	99119471	SINE	B2_Mm2	B2	chr9B2_Mm299119279	ProperStrand	2	2	-inf
chr12	99645573	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr4	47378282	47378329	protein_coding	Tgfbr1	intron	ENSMUSG00000007613	ProperStrand	20	1	-14.3229
chr17	39846281	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	64173372	64178226	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	31	-5.7029
chr1	133670928	133671022	LTR	ORR1A4-int	MaLR	chr1ORR1A4-int133668927	ProperStrand	5	chr1	133671155	133671219	LTR	ORR1A4	MaLR	chr1ORR1A4133671136	ProperStrand	1	1	-inf
chr4	43492784	43492918	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	30	1	-8.4825
chr4	44012849	44012972	LINE	Lx7	L1	chr4Lx744012152	ProperStrand	13	chr11	115286145	115286162	protein_coding	Kctd2	intron	ENSMUSG00000016940	NonProperStrand	11	1	-18.7120
chr12	116379181	116379245	LINE	L1Md_F2	L1	chr12L1Md_F2116378220	ProperStrand	2	chr12	116379923	116379966	LINE	Lx7	L1	chr12Lx7116379810	ProperStrand	1	1	-inf
chr4	22396553	22396662	LINE	Lx9	L1	chr4Lx922396414	NonProperStrand	1	chr17	39847008	39847036	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	35834990	35835008	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr17	66425559	66425616	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	1	-6.6548
chr7	16601687	16601717	SINE	B1_Mur4	Alu	chr7B1_Mur416601674	NonProperStrand	1	chr7	16582479	16582552	protein_coding	Gltscr1	intron	ENSMUSG00000070808	ProperStrand	25	1	-inf
chr19	7068971	7069071	protein_coding	Nudt22	intron	ENSMUSG00000037349	NonProperStrand	31	chr9	114706183	114706216	protein_coding	Cmtm8	intron	ENSMUSG00000041012	NonProperStrand	39	1	-14.2304
chr17	39846646	39846788	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	mmu-miR-714	2	21	miRNA	mmu-miR-714	.	mmu-miR-714	ProperStrand	5	2	-5.8332
chr11	82943616	82943636	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	14	chr4	149913793	149913916	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	1	-11.9765
chr7	92878790	92878869	LINE	L1Md_F	L1	chr7L1Md_F92876571	ProperStrand	3	chr4	86478549	86478618	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	2	-22.0998
chr19	7066607	7066722	protein_coding	Dnajc4	intron	ENSMUSG00000024963	NonProperStrand	5	chr8	85537479	85537512	protein_coding	Rnf150	intron	ENSMUSG00000047747	NonProperStrand	43	3	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr5	145123579	145123685	protein_coding	Bri3	intron	ENSMUSG00000047843	ProperStrand	118	1	-9.2407
chr6	26552081	26552181	LINE	L1Md_T	L1	chr6L1Md_T26552097	ProperStrand	1	chr6	26551541	26551631	LINE	Lx8	L1	chr6Lx826551470	ProperStrand	1	1	-inf
chr9	108330984	108335067	LINE	L1ME1	L1	chr9L1ME1108334987	ProperStrand	1	chr9	108335151	108336719	SINE	B1_Mur1	Alu	chr9B1_Mur1108336560	NonProperStrand	7	1	-inf
chr12	77243760	77243856	protein_coding	Esr2	intron	ENSMUSG00000021055	NonProperStrand	16	chr16	24984354	24984387	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-12.6315
chr3	34071823	34071889	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr8	91045601	91045657	protein_coding	Nkd1	intron	ENSMUSG00000031661	ProperStrand	33	1	-12.0681
chr2	90395159	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-4.9890
chr17	39847440	39847938	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	120347656	120348457	lincRNA	Gm16755	exon	ENSMUSG00000086218	ProperStrand	60	7	-3.0706
chr7	28317271	28317294	protein_coding	Pld3	utr3	ENSMUSG00000003363	ProperStrand	44	chr7	139451327	139451433	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-8.7665
chr14	50800241	50800328	LINE	L1VL4	L1	chr14L1VL450799802	NonProperStrand	15	chr10	62590631	62590680	protein_coding	Mypn	intron	ENSMUSG00000020067	ProperStrand	87	1	-14.0976
chr17	39847257	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	72869796	72869888	protein_coding-noncoding	1200014J11Rik	utr5	ENSMUSG00000020783	ProperStrand	1	1	-inf
chr4	54841378	54841468	LINE	L1_Mur3	L1	chr4L1_Mur354841321	NonProperStrand	1	chr4	54841221	54841321	Simple_repeat	(GGGA)n	Simple_repeat	chr4(GGGA)n54841203	NonProperStrand	1	1	-inf
chr11	45065091	45065181	LTR	MTEb	MaLR	chr11MTEb45065115	NonProperStrand	1	chr11	45064865	45064965	LTR	ORR1E	MaLR	chr11ORR1E45064783	NonProperStrand	1	1	-inf
chr8	109673335	109673368	LTR	MTB	MaLR	chr8MTB109673072	NonProperStrand	1	chr4	53860733	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-inf
chr9	11744659	11744749	LTR	MTB	MaLR	chr9MTB11744643	NonProperStrand	1	chr9	18175965	18176065	protein_coding	Naalad2	intron	ENSMUSG00000043943	ProperStrand	3	1	-inf
chr11	109011792	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr18	78034856	78034873	protein_coding	Pstpip2	utr3	ENSMUSG00000025429	ProperStrand	8	1	-10.2064
chr13	9834325	9834372	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr4	70396979	70397032	LINE	Lx9	L1	chr4Lx970395868	ProperStrand	5	1	-14.2762
chr9	65693594	65693684	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	chr8	122021014	122021114	protein_coding	Slc38a8	intron	ENSMUSG00000034224	NonProperStrand	70	3	-24.5224
chr11	107670046	107670093	SINE	B3	B2	chr11B3107669976	NonProperStrand	1	chr11	107671651	107671720	SINE	B4A	B4	chr11B4A107671664	ProperStrand	1	1	-inf
chr9	17987812	17987833	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr3	84018257	84018333	protein_coding	Trim2	intron	ENSMUSG00000027993	ProperStrand	141	1	-9.4278
chr16	21984645	21984700	protein_coding	Liph	intron	ENSMUSG00000044626	ProperStrand	24	chr7	25293820	25293885	protein_coding	Zfp428	intron	ENSMUSG00000064264	ProperStrand	4	1	-20.3325
chr11	98028457	98029443	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	chr18	74507840	74507890	protein_coding	Ccdc11	intron	ENSMUSG00000035394	ProperStrand	12	1	-13.9650
chr10	128322768	128323410	protein_coding	Gdf11	exon	ENSMUSG00000025352	NonProperStrand	8	chr2	5379310	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.6062
chr17	5549357	5549426	protein_coding	Zdhhc14	intron	ENSMUSG00000034265	ProperStrand	114	chr13	97190574	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.8982
chr11	119784609	119784709	LTR	ORR1E	MaLR	chr11ORR1E119784624	ProperStrand	4	chr11	119784544	119784634	SINE	RSINE1	B4	chr11RSINE1119784469	ProperStrand	1	1	-inf
chr10	95336448	95336548	LINE	Lx4A	L1	chr10Lx4A95335572	NonProperStrand	1	chr10	36858232	36858322	protein_coding	Marcks	exon	ENSMUSG00000069662	ProperStrand	1	1	-inf
chr4	59742507	59742607	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	NonProperStrand	10	chr4	60005987	60006077	protein_coding	Mup6	intron	ENSMUSG00000078689	ProperStrand	6	1	-22.0401
chr2	179587675	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr19	6504391	6504528	protein_coding	Nrxn2	intron	ENSMUSG00000033768	NonProperStrand	22	2	-21.8628
chr11	120580220	120580330	protein_coding-noncoding	Lrrc45	utr5	ENSMUSG00000025145	NonProperStrand	7	chr9	123461882	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr17	39846750	39846823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	24464552	24464596	Simple_repeat	(TAGA)n	Simple_repeat	chr18(TAGA)n24464385	NonProperStrand	1	1	-inf
chr11	60217081	60217145	protein_coding	Atpaf2	intron	ENSMUSG00000042709	ProperStrand	48	chr11	60207480	60207534	protein_coding	Lrrc48	intron	ENSMUSG00000056598	NonProperStrand	40	1	-13.2921
chr4	3553785	3553885	LTR	RLTR23	ERV1	chr4RLTR233553738	ProperStrand	1	chr6	124773056	124773146	protein_coding-noncoding	Usp5	utr3	ENSMUSG00000038429	NonProperStrand	2	1	-inf
chr11	86741070	86741135	LINE	L1ME1	L1	chr11L1ME186740817	NonProperStrand	1	chr17	39847651	39847739	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	89232976	89233099	SINE	ID_B1	B4	chr7ID_B189232968	ProperStrand	1	chr13	44913808	44913825	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	39846353	39846379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	74746081	74746595	SINE	B2_Mm2	B2	chr13B2_Mm274745998	NonProperStrand	1	1	-inf
chr1	161036058	161036090	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.7739
chr13	44797612	44797722	SINE	PB1D7	Alu	chr13PB1D744797589	NonProperStrand	1	chr9	79771404	79771420	protein_coding	Filip1	intron	ENSMUSG00000034898	ProperStrand	14	1	-inf
chr10	42259105	42259178	SINE	RSINE1	B4	chr10RSINE142259083	NonProperStrand	2	chr4	132553066	132553114	protein_coding	Fgr	exon	ENSMUSG00000028874	ProperStrand	28	1	-21.0040
chr6	7680170	7681308	LTR	MER34A	ERV1	chr6MER34A7681236	NonProperStrand	3	chr6	7681304	7681951	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n7681308	NonProperStrand	3	3	-inf
chr5	67723870	67723919	protein_coding-noncoding	Slc30a9	utr5	ENSMUSG00000029221	NonProperStrand	2	chr9	123462082	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	140119056	140119162	SINE	B4	B4	chr5B4140119058	ProperStrand	1	1	-inf
chr17	39847767	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	185418313	185420134	LTR	ORR1A2	MaLR	chr1ORR1A2185418112	NonProperStrand	2	1	-5.4040
chr19	53988124	53988201	protein_coding	Pdcd4	intron	ENSMUSG00000024975	ProperStrand	8	chr19	54031202	54031276	protein_coding	Shoc2	intron	ENSMUSG00000024976	ProperStrand	12	1	-19.4872
chr8	86648743	86648833	Simple_repeat	(ACTG)n	Simple_repeat	chr8(ACTG)n86648408	ProperStrand	1	chr8	86648828	86648928	Simple_repeat	(GCTG)n	Simple_repeat	chr8(GCTG)n86648822	ProperStrand	1	1	-inf
chr14	120920084	120922170	LTR	RMER5	ERV1	chr14RMER5120921767	ProperStrand	7	chr17	39848182	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.4467
chr5	146260994	146261068	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	31287831	31287892	LTR	RLTR6-int	ERV1	chr9RLTR6-int31287653	ProperStrand	1	1	-inf
chr17	39847160	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	113375762	113375779	SINE	RSINE1	B4	chr9RSINE1113375624	NonProperStrand	2	1	-6.5615
chr2	39189627	39189717	LINE	L1_Mm	L1	chr2L1_Mm39189464	ProperStrand	1	chr2	39189311	39189411	Simple_repeat	(GA)n	Simple_repeat	chr2(GA)n39189320	NonProperStrand	1	1	-inf
chr5	33528373	33528430	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm33527939	NonProperStrand	14	chr5	33528589	33528648	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int33528560	NonProperStrand	21	1	-17.0593
chr3	86012009	86012099	SINE	B4A	B4	chr3B4A86011978	ProperStrand	1	chr3	86012094	86012194	SINE	PB1D10	Alu	chr3PB1D1086012072	ProperStrand	1	1	-inf
chr7	80466661	80466717	lincRNA	A730056A06Rik	intron	ENSMUSG00000092033	ProperStrand	89	chr15	73104455	73104472	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	1	-6.6467
chr17	15114905	15115008	protein_coding	Phf10	intron	ENSMUSG00000023883	ProperStrand	3	chr9	118674951	118675002	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr12	109650485	109650620	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-4.7349
chr17	39847659	39847769	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	30093092	30093131	SINE	MIRb	MIR	chr19MIRb30092983	NonProperStrand	1	1	-inf
chr17	39846588	39846642	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	98313646	98313710	Simple_repeat	(TC)n	Simple_repeat	chr13(TC)n98313622	NonProperStrand	3	1	-4.3017
chrX	87238359	87238421	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr6	3201473	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	6	-7.6949
chr17	39848454	39848539	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr13	17987375	17987420	protein_coding	Rala	intron	ENSMUSG00000008859	ProperStrand	21	1	-3.5346
chr9	123462027	123462107	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	129117096	129117114	protein_coding	Zbtb8b	intron	ENSMUSG00000048485	NonProperStrand	2	1	-8.0983
chr19	5799813	5799913	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr10	127184039	127184129	protein_coding	Zbtb39	utr3	ENSMUSG00000044617	NonProperStrand	19	3	-15.4005
chr7	101982339	101982424	LINE	Lx6	L1	chr7Lx6101982306	NonProperStrand	2	chr7	3158342	3158382	protein_coding	AU018091	utr3	ENSMUSG00000054753	ProperStrand	34	1	-19.8869
chr15	79038672	79038712	antisense	Gm10863	.	ENSMUSG00000075555	ProperStrand	40	chr5	8407975	8408030	protein_coding	Dbf4	intron	ENSMUSG00000002297	ProperStrand	25	1	-14.6171
chr10	56390348	56390364	LTR	MTB	MaLR	chr10MTB56390077	NonProperStrand	2	chr17	39847276	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-inf
chr4	121208069	121208159	DNA	RCHARR1	MER1_type	chr4RCHARR1121208055	ProperStrand	1	chr4	121207919	121208019	LINE	L1_Mus1	L1	chr4L1_Mus1121207797	NonProperStrand	1	1	-inf
chr6	59106395	59106485	LINE	L1MA5A	L1	chr6L1MA5A59106322	NonProperStrand	1	chr6	59106065	59106165	SINE	B4	B4	chr6B459105962	NonProperStrand	1	1	-inf
chr17	39847325	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	39617616	39617707	LTR	ORR1B1-int	MaLR	chr2ORR1B1-int39617440	ProperStrand	1	1	-inf
chr13	36026467	36026521	LTR	RMER6C	ERVK	chr13RMER6C36026362	NonProperStrand	2	chr13	36028268	36028321	SINE	RSINE1	B4	chr13RSINE136028247	ProperStrand	1	1	-inf
chr15	84202308	84202387	LTR	ORR1E-int	MaLR	chr15ORR1E-int84202309	NonProperStrand	1	chr17	39846096	39846140	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr11	94650839	94650863	LTR	MT2B	ERVL	chr11MT2B94650842	ProperStrand	2	chr17	39847345	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr19	41509231	41509341	SINE	B1_Mur4	Alu	chr19B1_Mur441509238	ProperStrand	1	chr15	76407986	76408036	protein_coding	Adck5	intron	ENSMUSG00000022550	ProperStrand	25	1	-inf
chr8	87959282	87959372	SINE	B1_Mus1	Alu	chr8B1_Mus187959293	NonProperStrand	3	chr8	87859465	87959216	protein_coding	Mylk3	intron	ENSMUSG00000031698	ProperStrand	57	3	-inf
chr12	75546011	75546062	LTR	RMER6A	ERVK	chr12RMER6A75545887	ProperStrand	1	chr17	39846817	39846877	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	29472539	29472644	LTR	MERVL_2A-int	ERVL	chr7MERVL_2A-int29472410	NonProperStrand	3	chr7	29472129	29472173	LTR	ORR1A2	MaLR	chr7ORR1A229472096	ProperStrand	1	1	-inf
chr10	7610137	7610230	LTR	RLTR10C	ERVK	chr10RLTR10C7609927	NonProperStrand	1	chr17	39848099	39848156	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr9	50091577	50091654	LINE	Lx9	L1	chr9Lx950090541	ProperStrand	1	chr9	123462128	123462161	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	23110381	23110467	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr16	23110466	23110511	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	10	2	-inf
chr15	27576585	27576686	LTR	RMER19B	ERVK	chr15RMER19B27575713	NonProperStrand	3	chr15	27572962	27573052	SINE	B4A	B4	chr15B4A27572986	NonProperStrand	1	1	-inf
chr4	43492778	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr8	34902653	34902721	protein_coding	Rbpms	intron	ENSMUSG00000031586	ProperStrand	74	1	-6.6767
chr10	60812413	60812493	protein_coding	X99384	intron	ENSMUSG00000020092	ProperStrand	71	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-8.5644
chr14	13396083	13396173	protein_coding	Cadps	intron	ENSMUSG00000054423	ProperStrand	13	chr14	10784549	10784649	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	48	1	-15.5996
chr17	70963741	70963798	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	11143904	11143951	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	1	-3.3909
chr5	36378774	36378913	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.2976
chr17	39847227	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	105521416	105521460	SINE	B1_Mm	Alu	chr1B1_Mm105521401	ProperStrand	1	1	-inf
chr17	39846352	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	76128927	76129057	SINE	B2_Mm2	B2	chrXB2_Mm276128910	ProperStrand	4	3	-10.7069
chr10	68096757	68096842	LTR	MLT1D-int	MaLR	chr10MLT1D-int68096372	NonProperStrand	1	chr3	103158880	103158919	protein_coding	Trim33	utr3	ENSMUSG00000033014	ProperStrand	59	1	-inf
chr5	148337291	148337374	protein_coding	Pan3	intron	ENSMUSG00000029647	NonProperStrand	50	chr6	33581159	33581195	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-7.1760
chr17	39843796	39843836	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr8	105696359	105696469	LTR	ORR1D2	MaLR	chr8ORR1D2105696346	ProperStrand	2	1	-10.2298
chr8	79031140	79031230	SINE	B4A	B4	chr8B4A79031165	NonProperStrand	6	chr8	79031017	79031117	Simple_repeat	(TCTCTG)n	Simple_repeat	chr8(TCTCTG)n79030950	ProperStrand	11	6	-inf
chr12	76673941	76673981	protein_coding	Ppp2r5e	intron	ENSMUSG00000021051	ProperStrand	27	chr5	134625458	134625586	protein_coding	Wbscr16	intron	ENSMUSG00000061979	ProperStrand	39	1	-14.5133
chrX	119905889	119905989	LINE	Lx	L1	chrXLx119905774	ProperStrand	1	chrX	119905650	119905740	LTR	MTC	MaLR	chrXMTC119905482	ProperStrand	1	1	-inf
chr6	108145240	108145331	LINE	Lx8	L1	chr6Lx8108145168	ProperStrand	1	chr17	39846460	39846529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	22744838	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr8	69924243	69924307	LINE	L1M2	L1	chr8L1M269924056	NonProperStrand	1	1	-inf
chr7	105407811	105407827	protein_coding	Acer3	intron	ENSMUSG00000030760	NonProperStrand	2	chr6	32845512	32845584	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-17.0398
chr2	22744880	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	50920581	50920598	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	1	-7.0550
chr17	39847804	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	6173330	6173381	protein_coding	Tmed4	intron	ENSMUSG00000004394	ProperStrand	2	1	-5.4040
chr19	36988407	36988507	LTR	MTA_Mm	MaLR	chr19MTA_Mm36988435	NonProperStrand	1	chr19	36988335	36988425	SINE	B2_Mm2	B2	chr19B2_Mm236988269	NonProperStrand	1	1	-inf
chr16	4281031	4281158	LTR	RMER10A	ERVL	chr16RMER10A4280937	NonProperStrand	1	chr8	26038091	26038109	protein_coding	Adam32	intron	ENSMUSG00000037437	NonProperStrand	4	1	-inf
chr17	39846940	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	127238816	127239916	SINE	ID_B1	B4	chr2ID_B1127239824	NonProperStrand	1	1	-inf
chr2	22744853	22744887	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr10	75773032	75773107	protein_coding	Dip2a	intron	ENSMUSG00000020231	ProperStrand	98	1	-5.8408
chr9	108008087	108008137	lincRNA	F630040L22Rik	intron	ENSMUSG00000087645	ProperStrand	3	chr13	112494780	112494820	protein_coding	Mier3	intron	ENSMUSG00000032727	ProperStrand	63	1	-18.3494
chr17	3517102	3517178	protein_coding	Tiam2	intron	ENSMUSG00000023800	NonProperStrand	25	chr7	16111997	16112048	protein_coding	Obox1	intron	ENSMUSG00000054310	ProperStrand	82	1	-13.1681
chr11	62342041	62342104	protein_coding	Cenpv	intron	ENSMUSG00000018509	ProperStrand	13	chr2	91618195	91618255	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-14.5145
chr19	14454841	14454889	LINE	L1Md_F2	L1	chr19L1Md_F214454614	ProperStrand	3	chr17	39847733	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39846932	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	4334782	4339528	SINE	ID_B1	B4	chr14ID_B14339329	NonProperStrand	2	2	-inf
chr2	180193816	180193870	protein_coding	Slco4a1	intron	ENSMUSG00000038963	NonProperStrand	161	chr12	104864561	104864625	protein_coding	Serpina10	intron	ENSMUSG00000061947	ProperStrand	13	1	-13.1602
chr17	27853082	27853121	protein_coding	Spdef	intron	ENSMUSG00000024215	ProperStrand	1	chr16	56026274	56026387	protein_coding	Pcnp	intron	ENSMUSG00000071533	ProperStrand	35	1	-inf
chr11	69457205	69457295	protein_coding-noncoding	Fxr2	utr5	ENSMUSG00000018765	ProperStrand	1	chr11	69457391	69457491	protein_coding	Fxr2	intron	ENSMUSG00000018765	ProperStrand	5	1	-inf
chr5	108469086	108469145	LTR	RMER5	ERV1	chr5RMER5108469077	NonProperStrand	1	chr17	39843484	39843525	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr1	39851467	39851507	LTR	ORR1A2	MaLR	chr1ORR1A239851423	NonProperStrand	1	chr11	99213307	99214110	SINE	B3A	B2	chr11B3A99213891	NonProperStrand	1	1	-inf
chr2	49256907	49256975	LTR	ORR1A2	MaLR	chr2ORR1A249256875	NonProperStrand	1	chr9	123461931	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	18546950	18547073	protein_coding	Gnb1l	intron	ENSMUSG00000000884	ProperStrand	89	chr4	153722192	153722209	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	43	2	-18.7998
chr17	43311063	43311163	SINE	B3A	B2	chr17B3A43311030	ProperStrand	1	chr17	43310583	43310673	Simple_repeat	(TTCC)n	Simple_repeat	chr17(TTCC)n43310557	ProperStrand	1	1	-inf
chr12	111671570	111671937	LTR	RMER15	ERVL	chr12RMER15111671762	ProperStrand	5	chr17	39847348	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-5.9065
chr2	168744183	168744238	protein_coding	Zfp64	intron	ENSMUSG00000027551	ProperStrand	101	chr11	44564843	44564944	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	1	-9.5034
chr1	169344081	169344171	DNA	MER33	MER1_type	chr1MER33169343996	ProperStrand	1	chr1	169343509	169343609	SINE	B4A	B4	chr1B4A169343419	ProperStrand	1	1	-inf
chr5	23668220	23668320	SINE	B1_Mus1	Alu	chr5B1_Mus123668170	NonProperStrand	1	chr5	23668343	23668433	SINE	B3	B2	chr5B323668361	NonProperStrand	1	1	-inf
chr3	31458682	31458699	LINE	L1Md_F2	L1	chr3L1Md_F231458416	NonProperStrand	2	chr3	79456398	79456503	protein_coding	Rxfp1	intron	ENSMUSG00000034009	NonProperStrand	3	1	-20.8297
chr7	116550687	116550741	protein_coding	Stk33	intron	ENSMUSG00000031027	NonProperStrand	13	chr5	140438333	140439934	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	81	2	-21.4012
chr16	67698573	67698663	LINE	Lx6	L1	chr16Lx667698585	ProperStrand	1	chr2	69148300	69148400	protein_coding	Abcb11	intron	ENSMUSG00000027048	NonProperStrand	32	1	-inf
chr2	107877725	107877825	LINE	L1_Mm	L1	chr2L1_Mm107877518	ProperStrand	1	chr2	107878240	107878330	LINE	L1_Mus1	L1	chr2L1_Mus1107877934	NonProperStrand	1	1	-inf
chr14	22526636	22526726	protein_coding	Dupd1	intron	ENSMUSG00000063821	NonProperStrand	2	chr14	22527854	22527954	protein_coding	Dupd1	intron	ENSMUSG00000063821	ProperStrand	3	1	-20.8297
chr19	5604337	5604400	protein_coding	Kat5	intron	ENSMUSG00000024926	ProperStrand	6	chr3	79480720	79480798	protein_coding	Rxfp1	intron	ENSMUSG00000034009	ProperStrand	199	1	-14.3873
chr17	35384487	35384577	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	chr4	66582908	66583008	protein_coding	Tlr4	intron	ENSMUSG00000039005	ProperStrand	4	1	-23.3794
chr17	39847247	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	67843271	67843316	SINE	ID_B1	B4	chr14ID_B167843226	ProperStrand	1	1	-inf
chr17	39843803	39843831	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	116883464	116883552	snRNA	ENSMUSG00000070237_U5	.	ENSMUSG00000070237	ProperStrand	1	1	-inf
chr12	99409042	99409121	LTR	RMER6A	ERVK	chr12RMER6A99408919	NonProperStrand	1	chr9	123461965	123461995	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39846412	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	168284104	168284139	LTR	IAPEz-int	ERVK	chr1IAPEz-int168282656	NonProperStrand	1	1	-inf
chr17	39847215	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	179321925	179322019	SINE	B2_Mm1a	B2	chr1B2_Mm1a179321930	ProperStrand	1	1	-inf
chr15	99307593	99307663	DNA	Arthur1	Tip100	chr15Arthur199307488	NonProperStrand	2	chr15	99307038	99307568	SINE	B1_Mur3	Alu	chr15B1_Mur399307039	NonProperStrand	1	1	-inf
chr16	35981725	35981753	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr9	56223575	56223687	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-6.6113
chr9	116100290	116100309	SINE	B1_Mur2	Alu	chr9B1_Mur2116100250	ProperStrand	1	chr9	110281285	110281340	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr5	138948756	138948846	LINE	L1Md_F2	L1	chr5L1Md_F2138947677	ProperStrand	1	chr6	88347698	88347798	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	1	-inf
chr7	29124979	29124995	SINE	B1_Mus1	Alu	chr7B1_Mus129124852	NonProperStrand	1	chr4	59646629	59646680	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	ProperStrand	123	1	-inf
chr15	102213024	102213124	SINE	B1_Mur2	Alu	chr15B1_Mur2102213009	ProperStrand	1	chr15	102212903	102212993	SINE	B1_Mus2	Alu	chr15B1_Mus2102212873	NonProperStrand	2	1	-inf
chr11	20064684	20064747	SINE	B2_Mm2	B2	chr11B2_Mm220064615	NonProperStrand	1	chr4	46466474	46466571	protein_coding	Anp32b	intron	ENSMUSG00000028333	ProperStrand	54	1	-inf
chr9	123461892	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	165869932	165873028	protein_coding	Scyl3	intron	ENSMUSG00000026584	NonProperStrand	38	4	-7.5996
chr9	106431433	106431518	Other	RMER1A	Other	chr9RMER1A106431168	NonProperStrand	3	chr2	102173797	102173828	protein_coding	Trim44	intron	ENSMUSG00000027189	ProperStrand	80	1	-17.8877
chr11	109011814	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr19	3872294	3872337	protein_coding	Chka	intron	ENSMUSG00000024843	ProperStrand	73	1	-5.7143
chr11	121263779	121263869	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int121263599	ProperStrand	1	chr11	121263404	121263504	LTR	RMER16-int	ERVK	chr11RMER16-int121263267	ProperStrand	1	1	-inf
chr4	74313549	74313629	LINE	L1Md_A	L1	chr4L1Md_A74311740	NonProperStrand	2	chr17	39847326	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr2	95074640	95074739	LINE	L1M4	L1	chr2L1M495074626	ProperStrand	1	chr2	95074296	95074386	SINE	B1_Mus2	Alu	chr2B1_Mus295074239	ProperStrand	1	1	-inf
chr16	18245243	18247305	protein_coding-noncoding	Ranbp1	utr3	ENSMUSG00000005732	ProperStrand	6	chr16	18245338	18247398	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	38	5	-inf
chr3	157544801	157544851	LTR	RMER17C	ERVK	chr3RMER17C157544545	NonProperStrand	2	chr2	83695716	83695789	protein_coding	Fam171b	intron	ENSMUSG00000048388	ProperStrand	15	1	-22.6177
chr15	79950272	79950392	SINE	B4A	B4	chr15B4A79950267	ProperStrand	8	chr15	79950132	79950288	SINE	RSINE1	B4	chr15RSINE179950106	ProperStrand	10	7	-inf
chr11	69589683	69589805	protein_coding	Zbtb4	exon	ENSMUSG00000018750	ProperStrand	30	chr19	28472987	28473076	protein_coding	Glis3	intron	ENSMUSG00000052942	ProperStrand	174	1	-11.2866
chr1	37494619	37494729	protein_coding	Unc50	intron	ENSMUSG00000026111	NonProperStrand	7	chr5	125036495	125036519	protein_coding	Gtf2h3	intron	ENSMUSG00000029387	NonProperStrand	46	1	-17.0390
chr1	138600865	138600947	lincRNA	Gm16880	intron	ENSMUSG00000085011	NonProperStrand	16	chr3	9563858	9563913	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-9.1575
chr7	107227330	107227360	SINE	ID_B1	B4	chr7ID_B1107227210	ProperStrand	1	chr11	43685117	43685237	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	1	-inf
chr1	133005718	133005784	LINE	L1MB1	L1	chr1L1MB1133005686	ProperStrand	3	chr1	133005513	133005537	LINE	L2	L2	chr1L2133005479	NonProperStrand	1	1	-inf
chr17	39848155	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	119362806	119362895	protein_coding	A730011L01Rik	intron	ENSMUSG00000039850	ProperStrand	5	1	-6.1691
chr12	86513925	86513959	protein_coding	Pgf	intron	ENSMUSG00000004791	NonProperStrand	195	chr3	122467503	122467527	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-7.0682
chr2	5379273	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr8	3390153	3390213	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	NonProperStrand	12	1	-7.7556
chr12	39519387	39519477	protein_coding	Etv1	intron	ENSMUSG00000004151	NonProperStrand	4	chr12	39514898	39514998	protein_coding	Etv1	intron	ENSMUSG00000004151	ProperStrand	4	1	-inf
chrX	150984514	150984546	LINE	L1_Mus3	L1	chrXL1_Mus3150983431	NonProperStrand	5	chr2	5497089	5497215	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.6307
chr17	39846952	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	140482351	140482443	LTR	IAPEz-int	ERVK	chrXIAPEz-int140481879	ProperStrand	1	1	-inf
chr19	24307914	24308011	SINE	ID_B1	B4	chr19ID_B124307889	NonProperStrand	1	chr19	24345722	24345785	protein_coding	Fxn	intron	ENSMUSG00000059363	ProperStrand	6	1	-inf
chr3	49144824	49144855	LINE	L1Md_F2	L1	chr3L1Md_F249144719	ProperStrand	1	chr7	133064975	133065034	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr1	179306268	179306311	LTR	MTC	MaLR	chr1MTC179306109	NonProperStrand	1	chrX	7750651	7750749	protein_coding	Tbc1d25	intron	ENSMUSG00000039201	ProperStrand	18	1	-inf
chr17	28429306	28429352	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	chr19	44294307	44294399	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	1	-8.7278
chr17	39843444	39843527	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr19	31083615	31083645	protein_coding	Prkg1	intron	ENSMUSG00000052920	NonProperStrand	44	1	-3.1134
chr5	140181484	140181584	SINE	B1_Mus2	Alu	chr5B1_Mus2140181460	NonProperStrand	1	chr15	82030451	82030541	protein_coding	Srebf2	intron	ENSMUSG00000022463	ProperStrand	28	1	-inf
chr10	80829074	80829141	protein_coding	Fzr1	utr3	ENSMUSG00000020235	NonProperStrand	7	chr9	123462089	123462140	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr11	109011794	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	154866960	154867052	protein_coding	a	intron	ENSMUSG00000027596	ProperStrand	61	1	-6.0670
chr10	70020895	70020985	protein_coding	Phyhipl	utr3	ENSMUSG00000037747	ProperStrand	4	chr10	70020405	70020505	protein_coding	Fam13c	utr3	ENSMUSG00000043259	NonProperStrand	1	1	-inf
chr1	161035399	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr7	107608437	107608487	protein_coding	C2cd3	intron	ENSMUSG00000047248	ProperStrand	36	1	-13.4659
chr6	51466988	51467210	LTR	MT2A	ERVL	chr6MT2A51466966	NonProperStrand	10	chr6	51466676	51466976	SINE	B4	B4	chr6B451466718	NonProperStrand	6	3	-inf
chr11	27256073	27256092	LINE	L1ME3B	L1	chr11L1ME3B27255961	ProperStrand	1	chr12	110692644	110692769	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	1	-inf
chr7	29276401	29276427	Low_complexity	T-rich	Low_complexity	chr7T-rich29276374	NonProperStrand	1	chr11	119038693	119038709	protein_coding	Tbc1d16	intron	ENSMUSG00000039976	ProperStrand	16	1	-inf
chr12	80256724	80256806	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.7327
chr11	9118643	9125639	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	chr2	156849995	156850085	protein_coding	9830001H06Rik	intron	ENSMUSG00000055485	NonProperStrand	51	1	-11.9559
chr17	39847271	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	98853392	98853490	SINE	B1_Mm	Alu	chr15B1_Mm98853374	NonProperStrand	1	1	-inf
chr12	111662014	111662133	LTR	RMER4B	ERVK	chr12RMER4B111661970	ProperStrand	1	chr6	144165810	144165836	protein_coding	Sox5	intron	ENSMUSG00000041540	ProperStrand	44	1	-inf
chr5	52160834	52160910	LINE	L1_Mus1	L1	chr5L1_Mus152160393	NonProperStrand	2	chr17	39847718	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr5	72618173	72618189	lincRNA	Atp10d	intron	ENSMUSG00000046808	NonProperStrand	11	chr9	72743562	72743634	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-12.1135
chr10	36578121	36578141	LINE	Lx6	L1	chr10Lx636578110	ProperStrand	5	chr17	39847101	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-7.5968
chr17	92693672	92693762	LINE	L1_Mus1	L1	chr17L1_Mus192691844	NonProperStrand	1	chr17	92693866	92693966	LTR	IAPLTR1_Mm	ERVK	chr17IAPLTR1_Mm92693828	ProperStrand	1	1	-inf
chr17	39845923	39845984	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr13	21370633	21370728	Simple_repeat	(TTC)n	Simple_repeat	chr13(TTC)n21370581	ProperStrand	1	1	-inf
chr5	38258777	38258867	SINE	B1F1	Alu	chr5B1F138258802	NonProperStrand	1	chr5	38258539	38258639	SINE	B3	B2	chr5B338258472	NonProperStrand	1	1	-inf
chr13	3567048	3567174	protein_coding	BC016423	intron	ENSMUSG00000033799	NonProperStrand	13	chr17	56005877	56005905	protein_coding	Zfp119a	exon	ENSMUSG00000057835	ProperStrand	21	1	-17.2958
chr1	162632378	162632478	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	NonProperStrand	41	chr7	103550483	103550573	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-13.2014
chr13	55510247	55510300	protein_coding	Slc34a1	intron	ENSMUSG00000021490	NonProperStrand	3	chr13	55511071	55511129	protein_coding	Pfn3	intron	ENSMUSG00000044444	ProperStrand	6	1	-inf
chr1	122357166	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr17	24694249	24694281	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	65	1	-8.7483
chr12	70945888	70945978	protein_coding-noncoding	Map4k5	utr3	ENSMUSG00000034761	ProperStrand	2	chr12	70945581	70945681	protein_coding	Map4k5	intron	ENSMUSG00000034761	ProperStrand	7	1	-21.1088
chr9	19658016	19658090	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr11	104132254	104132273	protein_coding	Mapt	intron	ENSMUSG00000018411	ProperStrand	3	1	-17.1444
chr15	80078511	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-9.3524
chr9	123461882	123461906	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr10	127179895	127180008	protein_coding	Zbtb39	exon	ENSMUSG00000044617	NonProperStrand	19	1	-3.1531
chr9	120573850	120573903	LTR	MTE2b	MaLR	chr9MTE2b120573676	NonProperStrand	9	chr7	134902499	134902577	protein_coding	Fbxl19	intron	ENSMUSG00000030811	ProperStrand	91	1	-15.0837
chr9	61913394	61914494	protein_coding	Glce	intron	ENSMUSG00000032252	ProperStrand	176	chr4	32964778	32965282	protein_coding	Ankrd6	intron	ENSMUSG00000040183	NonProperStrand	39	22	-inf
chr6	39404358	39404436	SINE	B2_Mm1t	B2	chr6B2_Mm1t39404332	ProperStrand	1	chr6	39403711	39403779	SINE	B2_Mm2	B2	chr6B2_Mm239403591	NonProperStrand	1	1	-inf
chr9	90952920	90952937	LINE	Lx3B	L1	chr9Lx3B90952364	NonProperStrand	1	chr2	168199291	168199385	LTR	RLTR1B	ERV1	chr2RLTR1B168199305	NonProperStrand	3	1	-inf
chr10	47604745	47604835	LINE	Lx2	L1	chr10Lx247604126	NonProperStrand	1	chr10	47604970	47605070	LINE	Lx2	L1	chr10Lx247604931	NonProperStrand	1	1	-inf
chr5	65298013	65298113	LTR	RLTR1B-int	ERV1	chr5RLTR1B-int65297909	ProperStrand	1	chr5	65298428	65298518	LTR	RLTR1B	ERV1	chr5RLTR1B65298211	ProperStrand	1	1	-inf
chr12	112736856	112737206	LTR	MERVK26-int	ERVK	chr12MERVK26-int112736820	ProperStrand	14	chr12	112743747	112743826	SINE	B2_Mm1a	B2	chr12B2_Mm1a112743739	NonProperStrand	1	1	-inf
chr18	56755173	56755221	SINE	B1_Mur2	Alu	chr18B1_Mur256755165	ProperStrand	1	chr18	56757539	56757577	SINE	RSINE1	B4	chr18RSINE156757462	NonProperStrand	1	1	-inf
chr3	63993879	63993950	LINE	L1_Mm	L1	chr3L1_Mm63993772	NonProperStrand	2	chr4	109081707	109081763	protein_coding	Ttc39a	intron	ENSMUSG00000028555	NonProperStrand	22	1	-21.6660
chr2	156665456	156665546	antisense	Gm14230	.	ENSMUSG00000087179	NonProperStrand	5	chr13	44869602	44869701	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr15	77763048	77763235	SINE	B1_Mur1	Alu	chr15B1_Mur177763059	NonProperStrand	6	chr15	77761988	77763023	SINE	B3	B2	chr15B377762842	ProperStrand	6	6	-inf
chr17	39843942	39843990	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr3	96220794	96220852	LTR	RLTR33	ERVK	chr3RLTR3396220444	ProperStrand	5	1	-9.0377
chr7	46850212	46850274	LINE	L1_Mus1	L1	chr7L1_Mus146850082	ProperStrand	37	chr1	134934903	134934987	LTR	RLTR33	ERVK	chr1RLTR33134934908	NonProperStrand	1	1	-inf
chr17	39847801	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	90582004	90582023	protein_coding	Slc41a3	intron	ENSMUSG00000030089	NonProperStrand	2	1	-5.4040
chr5	146260994	146261025	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	105376473	105376551	protein_coding	Acer3	intron	ENSMUSG00000030760	ProperStrand	49	1	-5.4573
chr9	6646962	6646984	SINE	ID_B1	B4	chr9ID_B16646850	ProperStrand	3	chr14	55088666	55088789	protein_coding	Lrp10	utr3	ENSMUSG00000022175	NonProperStrand	10	1	-20.3377
chrX	4899367	4899401	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr17	39848165	39848272	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-3.5676
chr7	19766962	19768452	protein_coding-noncoding	Eml2	utr5	ENSMUSG00000040811	NonProperStrand	3	chr7	19767059	19768539	protein_coding	Eml2	intron	ENSMUSG00000040811	NonProperStrand	11	1	-inf
chr16	96004096	96004186	LINE	L1Md_T	L1	chr16L1Md_T96004103	NonProperStrand	16	chr16	96003998	96004098	LTR	MLT1B	MaLR	chr16MLT1B96003953	NonProperStrand	3	1	-inf
chr4	132727397	132727497	misc_RNA	7SK	.	ENSMUSG00000089298	ProperStrand	1	chr4	132727609	132727699	protein_coding	Wasf2	intron	ENSMUSG00000028868	NonProperStrand	9	1	-inf
chr17	84328887	84328977	SINE	RSINE1	B4	chr17RSINE184328846	ProperStrand	2	chr7	119715767	119715867	protein_coding	Parva	intron	ENSMUSG00000030770	NonProperStrand	12	1	-inf
chr6	3201478	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	31004848	31004912	protein_coding	Aplp2	intron	ENSMUSG00000031996	ProperStrand	20	1	-4.9626
chrX	150569654	150569697	LTR	RMER17D2	ERVK	chrXRMER17D2150569071	NonProperStrand	6	chrX	150566232	150566285	pseudogene	Gm5645	.	ENSMUSG00000081702	ProperStrand	2	2	-inf
chr2	121185739	121185839	protein_coding-noncoding	Ckmt1	utr5	ENSMUSG00000000308	ProperStrand	1	chr2	121185643	121185733	protein_coding	Ckmt1	intron	ENSMUSG00000000308	ProperStrand	6	1	-inf
chr3	16230204	16230259	LTR	RLTR17	ERVK	chr3RLTR1716230115	ProperStrand	1	chr6	49236498	49236563	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-inf
chr17	83479035	83479094	SINE	B1_Mm	Alu	chr17B1_Mm83478990	NonProperStrand	1	chr7	3638578	3638657	protein_coding	Mboat7	intron	ENSMUSG00000035596	NonProperStrand	14	1	-inf
chr1	150679580	150680611	LTR	MURVY-LTR	ERV1	chr1MURVY-LTR150679310	NonProperStrand	1	chr15	35529374	35529434	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-inf
chr1	91077565	91077628	LINE	Lx8	L1	chr1Lx891077438	ProperStrand	1	chr17	39847741	39847779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	93995284	93995302	LINE	L1Md_T	L1	chr7L1Md_T93994338	ProperStrand	4	chr5	30712553	30712642	protein_coding	Otof	intron	ENSMUSG00000062372	NonProperStrand	98	1	-16.7582
chr17	39846073	39846175	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	90124864	90124911	SINE	B1_Mus2	Alu	chr7B1_Mus290124755	ProperStrand	1	1	-inf
chr17	39847836	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	3914810	3914853	LTR	RMER4B	ERVK	chr4RMER4B3914390	ProperStrand	3	1	-4.3512
chrX	85738003	85738093	LINE	L1VL4	L1	chrXL1VL485736973	NonProperStrand	1	chr17	39847227	39847327	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	72980546	72980592	protein_coding	P2rx5	intron	ENSMUSG00000005950	ProperStrand	20	chr4	132310239	132310324	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-11.9482
chr10	40185871	40185961	protein_coding	Cdk19	intron	ENSMUSG00000038481	NonProperStrand	22	chr10	40162130	40162230	protein_coding	Cdk19	intron	ENSMUSG00000038481	ProperStrand	3	1	-inf
chr17	39847942	39848007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	96529225	96529300	protein_coding	Polr3c	intron	ENSMUSG00000028099	NonProperStrand	1	1	-inf
chr13	44691546	44691595	SINE	B2_Mm2	B2	chr13B2_Mm244691539	NonProperStrand	1	chr12	109645915	109645980	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	35688065	35688083	LTR	MLT1H	MaLR	chr7MLT1H35687692	NonProperStrand	1	1	-inf
chr5	98571312	98571411	LTR	LTR55	ERV	chr5LTR5598571313	ProperStrand	1	chr5	98570981	98571071	LTR	MLT1-int	MaLR	chr5MLT1-int98570731	NonProperStrand	1	1	-inf
chr17	39846452	39846791	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	36560796	36561424	protein_coding	0610010O12Rik	intron	ENSMUSG00000046727	ProperStrand	12	2	-3.1058
chr11	49473968	49474068	LINE	L1MA4	L1	chr11L1MA449473956	NonProperStrand	1	chr11	49473783	49473873	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n49473801	ProperStrand	1	1	-inf
chr13	33897314	33897404	LINE	L1Md_T	L1	chr13L1Md_T33896775	NonProperStrand	2	chr11	87426780	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	2	-inf
chr7	80086564	80086654	LINE	L1Md_F2	L1	chr7L1Md_F280085878	NonProperStrand	1	chr7	80087463	80087526	LINE	L1_Mus1	L1	chr7L1_Mus180087435	NonProperStrand	1	1	-inf
chr5	147266892	147266911	protein_coding	Wasf3	intron	ENSMUSG00000029636	NonProperStrand	1	chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-inf
chr17	39846352	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	72226237	72255782	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	10	-3.5417
chr15	43624984	43625004	LINE	L1Md_F2	L1	chr15L1Md_F243624174	NonProperStrand	1	chr8	79585691	79585830	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	1	-inf
chr17	39846411	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	115580990	115581068	SINE	B2_Mm2	B2	chr11B2_Mm2115580972	ProperStrand	5	1	-3.1907
chr10	77077755	77078003	protein_coding	Sumo3	intron	ENSMUSG00000020265	NonProperStrand	91	chr9	110281293	110281318	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-6.7355
chr10	10855306	10855406	LINE	L1_Mus1	L1	chr10L1_Mus110855148	NonProperStrand	1	chr10	10855855	10855945	LINE	L1_Mus1	L1	chr10L1_Mus110855518	NonProperStrand	1	1	-inf
chr8	69902689	69902789	LINE	Lx7	L1	chr8Lx769902685	NonProperStrand	10	chr8	69902819	69902909	SINE	B1_Mus2	Alu	chr8B1_Mus269902781	ProperStrand	14	10	-inf
chr5	146835701	146835940	LINE	L1_Mur2	L1	chr5L1_Mur2146835560	NonProperStrand	4	chr17	13862421	13862521	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	2	-inf
chr5	65549728	65549756	protein_coding	Klhl5	intron	ENSMUSG00000054920	ProperStrand	40	chr4	133747920	133748029	protein_coding	Gm7534	intron	ENSMUSG00000073747	ProperStrand	40	1	-13.6615
chr18	44421911	44421967	LTR	IAPEz-int	ERVK	chr18IAPEz-int44418347	NonProperStrand	16	chr18	7551393	7551459	protein_coding	Mpp7	intron	ENSMUSG00000057440	ProperStrand	99	1	-13.7055
chr17	39848162	39848200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	62450699	62450728	LTR	RMER13A	ERVK	chr4RMER13A62450595	ProperStrand	2	1	-8.4422
chr9	90234884	90234947	LINE	L1Md_F2	L1	chr9L1Md_F290233279	ProperStrand	10	chr5	143110739	143110822	protein_coding	Wipi2	intron	ENSMUSG00000029578	NonProperStrand	16	1	-18.3018
chr9	58873214	58873290	protein_coding	Neo1	intron	ENSMUSG00000032340	ProperStrand	39	chr13	97190569	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.9665
chr4	84427920	84428010	LINE	L1MA4	L1	chr4L1MA484427877	ProperStrand	1	chr4	84427738	84427838	LINE	Lx5	L1	chr4Lx584427200	ProperStrand	1	1	-inf
chr10	94676968	94676986	protein_coding	Cradd	intron	ENSMUSG00000045867	ProperStrand	4	chr15	53144689	53144717	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	1	-16.3329
chr17	39847686	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	21614012	21614069	SINE	RSINE1	B4	chr14RSINE121613970	NonProperStrand	1	1	-inf
chr17	39847695	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	136180085	136180160	lincRNA	Lactbl1	intron	ENSMUSG00000070683	NonProperStrand	1	1	-inf
chr17	78970766	78970826	protein_coding	Vit	intron	ENSMUSG00000024076	NonProperStrand	35	chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-11.0323
chr8	3396217	3396279	protein_coding	Arhgef18	intron	ENSMUSG00000004568	ProperStrand	170	chr13	63301627	63301698	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	NonProperStrand	40	1	-10.7505
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	78365235	78365335	SINE	B2_Mm1t	B2	chr9B2_Mm1t78365263	NonProperStrand	1	1	-inf
chr17	39846275	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	59697678	59710547	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	11	-6.5295
chr12	78350926	78351002	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	35037919	35037994	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	1	-3.7988
chr1	92439561	92439605	LTR	MLT2B3	ERVL	chr1MLT2B392439446	ProperStrand	2	chr1	92473745	92473779	LTR	MTEa	MaLR	chr1MTEa92473736	NonProperStrand	1	1	-inf
chr10	114765301	114765401	LTR	MER70-int	ERVL	chr10MER70-int114765042	ProperStrand	1	chr10	114765760	114765850	LTR	MER70B	ERVL	chr10MER70B114765467	ProperStrand	1	1	-inf
chr16	31835459	31835525	protein_coding	Dlg1	intron	ENSMUSG00000022770	ProperStrand	104	chr8	87892559	87892601	protein_coding	Mylk3	intron	ENSMUSG00000031698	ProperStrand	57	1	-11.0206
chr1	100180181	100180215	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr2	139953884	139953908	protein_coding	Esf1	intron	ENSMUSG00000045624	ProperStrand	16	1	-13.3526
chr9	92585200	92585287	LINE	Lx9	L1	chr9Lx992584940	ProperStrand	1	chr17	39848134	39848158	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr17	39847804	39847856	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	88354874	88354952	SINE	B4	B4	chr4B488354816	NonProperStrand	1	1	-inf
chr7	80029668	80029716	LINE	L1Md_F2	L1	chr7L1Md_F280029653	ProperStrand	1	chr7	80029863	80029918	LTR	MTA_Mm	MaLR	chr7MTA_Mm80029756	NonProperStrand	2	1	-inf
chr16	96134347	96134474	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	NonProperStrand	15	chr5	108503603	108503625	protein_coding	Mtf2	intron	ENSMUSG00000029267	ProperStrand	7	1	-18.9688
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr9	49523710	49523843	protein_coding	Ncam1	intron	ENSMUSG00000039542	ProperStrand	60	1	-11.3699
chr2	156147368	156147405	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	NonProperStrand	55	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.1423
chr4	40732173	40732752	LINE	L1MEg	L1	chr4L1MEg40732314	ProperStrand	2	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-14.0145
chr5	53621188	53621278	SINE	B1_Mur4	Alu	chr5B1_Mur453621160	NonProperStrand	9	chr5	53621283	53621388	SINE	B4A	B4	chr5B4A53621285	NonProperStrand	9	9	-inf
chr17	39847142	39847264	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	104045361	104045380	protein_coding	Slc10a6	intron	ENSMUSG00000029321	ProperStrand	5	1	-4.3348
chrX	150984605	150984632	LINE	L1_Mus3	L1	chrXL1_Mus3150983431	ProperStrand	2	chr9	110281300	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-15.0096
chr14	70694814	70694853	SINE	ID_B1	B4	chr14ID_B170694738	NonProperStrand	1	chr14	70694468	70694529	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n70694467	NonProperStrand	1	1	-inf
chr11	84433772	84433836	LTR	MLT1G	MaLR	chr11MLT1G84433752	ProperStrand	1	chr17	39847956	39847992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	43122651	43122751	protein_coding	Unc13b	intron	ENSMUSG00000028456	NonProperStrand	4	chr4	43372164	43372254	protein_coding	Atp8b5	intron	ENSMUSG00000028457	NonProperStrand	8	1	-inf
chr14	55600366	55600466	protein_coding-noncoding	Myh7	utr3	ENSMUSG00000053093	ProperStrand	1	chr8	67143367	67143457	protein_coding	Cpe	intron	ENSMUSG00000037852	NonProperStrand	4	1	-inf
chr17	39846729	39846759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	134622447	134622512	SINE	B3A	B2	chr5B3A134622379	ProperStrand	1	1	-inf
chr2	107779445	107779545	LTR	ORR1E	MaLR	chr2ORR1E107779358	NonProperStrand	1	chr2	107779901	107779991	SINE	B3	B2	chr2B3107779773	ProperStrand	1	1	-inf
chr1	166138219	166138285	protein_coding	F5	intron	ENSMUSG00000026579	ProperStrand	18	chr2	35151111	35151198	protein_coding	Gsn	intron	ENSMUSG00000026879	ProperStrand	24	1	-16.3168
chr4	49611971	49612067	LTR	MTB	MaLR	chr4MTB49611749	NonProperStrand	1	chr4	49604589	49604621	protein_coding	2810432L12Rik	intron	ENSMUSG00000039611	ProperStrand	1	1	-inf
chr6	113572653	113572686	SINE	B1_Mus1	Alu	chr6B1_Mus1113572575	NonProperStrand	1	chr6	113574578	113574639	protein_coding	Vhl	intron	ENSMUSG00000033933	ProperStrand	7	1	-inf
chr12	104815940	104815983	protein_coding	Ppp4r4	intron	ENSMUSG00000021209	NonProperStrand	63	chr8	127184972	127185089	protein_coding	2310022B05Rik	intron	ENSMUSG00000031983	NonProperStrand	55	2	-18.8033
chr8	33780828	33780885	LINE	Lx3_Mus	L1	chr8Lx3_Mus33780162	ProperStrand	1	chr2	5379268	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr13	103193657	103193757	LINE	L1Md_T	L1	chr13L1Md_T103191284	NonProperStrand	1	chr13	107302082	107302172	LTR	MTD	MaLR	chr13MTD107302093	NonProperStrand	1	1	-inf
chr14	12005315	12005392	LTR	RMER19C	ERVK	chr14RMER19C12005183	NonProperStrand	1	chr8	91106361	91106403	protein_coding	Nkd1	intron	ENSMUSG00000031661	NonProperStrand	8	1	-inf
chr13	98611307	98611407	LINE	L1MB8	L1	chr13L1MB898611230	NonProperStrand	1	chr13	98610951	98611040	SINE	B4A	B4	chr13B4A98610743	ProperStrand	1	1	-inf
chr14	86772356	86772426	LINE	L1Md_F3	L1	chr14L1Md_F386771571	NonProperStrand	2	chr17	39847681	39847757	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr18	79921460	79921560	LINE	L1Md_A	L1	chr18L1Md_A79920462	ProperStrand	1	chr1	9940610	9940700	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	1	-inf
chr11	109011651	109011702	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	49805014	49805082	LTR	MLT1A0	MaLR	chr11MLT1A049804918	NonProperStrand	1	1	-inf
chr6	52593885	52593985	SINE	B2_Mm2	B2	chr6B2_Mm252593868	ProperStrand	2	chr6	52594083	52594173	SINE	B2_Mm2	B2	chr6B2_Mm252594027	ProperStrand	2	2	-inf
chr19	5832350	5832392	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	chr8	79673833	79673891	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	1	-7.6718
chr6	148354977	148355052	protein_coding	Tmtc1	intron	ENSMUSG00000030306	NonProperStrand	51	chr13	97190562	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.4390
chr6	72125717	72125756	LTR	RLTR12B	ERVK	chr6RLTR12B72125420	ProperStrand	1	chr16	16872508	16872582	protein_coding	Top3b	intron	ENSMUSG00000022779	ProperStrand	22	1	-inf
chr8	73341209	73341261	protein_coding	Il12rb1	intron	ENSMUSG00000000791	NonProperStrand	44	chr17	24721300	24721682	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-9.6258
chr17	39847058	39847344	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	62159158	62159352	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	5	-5.7546
chr11	82943617	82943635	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	14	chr9	110281287	110281337	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-10.5141
chr19	6049350	6049469	protein_coding-noncoding	Syvn1	utr5	ENSMUSG00000024807	NonProperStrand	1	chr5	120128255	120128295	protein_coding	Tbx3	intron	ENSMUSG00000018604	ProperStrand	33	1	-inf
chr9	27059333	27059423	DNA	MER2	MER2_type	chr9MER227059338	ProperStrand	2	chr9	27059494	27059594	DNA	MER2	MER2_type	chr9MER227059500	ProperStrand	2	2	-inf
chr19	14454752	14454821	LINE	L1Md_F2	L1	chr19L1Md_F214454614	ProperStrand	3	chr7	139276523	139276602	protein_coding	Cpxm2	intron	ENSMUSG00000030862	ProperStrand	13	1	-inf
chr9	123462128	123462179	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	35488097	35505050	protein_coding	Chst8	intron	ENSMUSG00000060402	ProperStrand	71	3	-3.3315
chr11	110507853	110507953	LINE	L1Md_F3	L1	chr11L1Md_F3110507777	NonProperStrand	1	chr11	110508135	110508225	LINE	L1Md_F3	L1	chr11L1Md_F3110507866	NonProperStrand	1	1	-inf
chr18	90588507	90588595	LINE	L1_Mur1	L1	chr18L1_Mur190587700	NonProperStrand	1	chr16	20387142	20387193	protein_coding	Abcc5	intron	ENSMUSG00000022822	ProperStrand	63	1	-inf
chr2	22744850	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	51464456	51464538	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n51464369	NonProperStrand	5	1	-11.9551
chr9	59441843	59441865	protein_coding	Celf6	intron	ENSMUSG00000032297	NonProperStrand	8	chr11	120104498	120104620	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	136	2	-inf
chr11	60164798	60164831	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	chr18	10146962	10147045	protein_coding	Rock1	intron	ENSMUSG00000024290	ProperStrand	28	1	-11.2299
chr19	40550326	40550362	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	chr12	109672519	109672619	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-5.0330
chr11	59076318	59076334	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	chr9	110536450	110536571	protein_coding	Nbeal2	exon	ENSMUSG00000056724	NonProperStrand	24	1	-16.1252
chr9	41979432	41980663	LINE	L1MD	L1	chr9L1MD41979234	ProperStrand	4	chr9	41980664	41982914	LTR	MTEa-int	MaLR	chr9MTEa-int41980521	NonProperStrand	2	2	-inf
chr2	168193567	168193657	Low_complexity	AT_rich	Low_complexity	chr2AT_rich168193550	NonProperStrand	3	chr2	168193470	168193570	SINE	B1_Mur2	Alu	chr2B1_Mur2168193402	NonProperStrand	1	1	-inf
chr16	35714252	35714308	protein_coding	Dirc2	intron	ENSMUSG00000022848	ProperStrand	31	chrX	152013821	152013901	protein_coding	Ptchd1	intron	ENSMUSG00000041552	ProperStrand	4	1	-19.4012
chr1	171270339	171271228	LINE	L1Md_T	L1	chr1L1Md_T171269853	ProperStrand	1	chr17	39847659	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	40096476	40096576	LINE	L1Md_F3	L1	chr3L1Md_F340096407	NonProperStrand	1	chr14	70028809	70028899	lincRNA	Gm16867	intron	ENSMUSG00000085092	ProperStrand	41	1	-inf
chr13	112578205	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr1	10036134	10036192	protein_coding	Cspp1	intron	ENSMUSG00000056763	NonProperStrand	8	1	-8.2470
chr7	78605234	78605334	LTR	ORR1B2	MaLR	chr7ORR1B278605256	NonProperStrand	1	chr7	78605515	78605605	SINE	B1_Mur3	Alu	chr7B1_Mur378605462	NonProperStrand	1	1	-inf
chr5	4102476	4102576	protein_coding	Cyp51	intron	ENSMUSG00000001467	ProperStrand	21	chr13	36085484	36085574	protein_coding	Lyrm4	intron	ENSMUSG00000046573	ProperStrand	53	2	-20.5326
chr16	8713072	8713094	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr10	127554403	127554435	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	148	1	-6.8673
chr8	85057403	85057488	DNA	FordPrefect	Tip100	chr8FordPrefect85057261	NonProperStrand	3	chr12	78350868	78350926	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-12.2277
chr16	90046038	90046138	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr11	85634773	85634863	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-3.8722
chr1	165593362	165593432	LINE	Lx9	L1	chr1Lx9165593291	ProperStrand	1	chr2	5379274	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr13	73810043	73810074	protein_coding	Slc6a18	intron	ENSMUSG00000021612	NonProperStrand	42	chr10	24902276	24902371	protein_coding	Akap7	intron	ENSMUSG00000039166	NonProperStrand	14	1	-15.7125
chr17	39847864	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	35668063	35668122	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n35667943	NonProperStrand	1	1	-inf
chr6	3201474	3201547	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	62344043	62344062	protein_coding	Fap	intron	ENSMUSG00000000392	NonProperStrand	1	1	-inf
chr5	122880370	122880453	protein_coding	Anapc7	intron	ENSMUSG00000029466	NonProperStrand	20	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.6542
chr17	70963690	70963780	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	120960317	120960417	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-3.4474
chr12	13103582	13103672	LINE	L1MB3	L1	chr12L1MB313103353	NonProperStrand	1	chr12	13103148	13103248	LINE	Lx4A	L1	chr12Lx4A13103145	ProperStrand	1	1	-inf
chr10	34282577	34282600	protein_coding	Frk	intron	ENSMUSG00000019779	ProperStrand	25	chr2	5379310	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.2637
chr8	50825493	50825583	SINE	B1_Mus2	Alu	chr8B1_Mus250825503	NonProperStrand	1	chr8	50825680	50825780	SINE	B2_Mm2	B2	chr8B2_Mm250825646	NonProperStrand	1	1	-inf
chr17	46819824	46819924	protein_coding	Mea1	utr3	ENSMUSG00000002768	NonProperStrand	5	chr17	46820005	46820095	protein_coding	Ppp2r5d	utr3	ENSMUSG00000059409	ProperStrand	16	2	-inf
chr9	123461920	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	100816819	100816859	protein_coding	Sec31a	intron	ENSMUSG00000035325	ProperStrand	16	1	-3.4729
chr11	19986177	19986277	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	chr9	78192942	78193032	protein_coding	Gsta2	intron	ENSMUSG00000057933	NonProperStrand	15	1	-12.5622
chrX	75416422	75416440	LINE	L1Md_F3	L1	chrXL1Md_F375415090	NonProperStrand	2	chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39847187	39847291	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr12	3573228	3589182	protein_coding	Dtnb	utr5	ENSMUSG00000071454	NonProperStrand	12	1	-17.0151
chr17	39846921	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	135386826	135386859	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n135386761	NonProperStrand	1	1	-inf
chr16	15489053	15489094	LINE	L1VL4	L1	chr16L1VL415488310	ProperStrand	1	chr16	15489754	15489805	LINE	Lx6	L1	chr16Lx615489115	ProperStrand	1	1	-inf
chr5	124494567	124494622	LTR	MTA_Mm	MaLR	chr5MTA_Mm124494248	ProperStrand	1	chr5	124494721	124494809	Simple_repeat	(TC)n	Simple_repeat	chr5(TC)n124494736	ProperStrand	1	1	-inf
chr11	62575818	62575897	antisense	Gm12283	.	ENSMUSG00000086674	ProperStrand	2	chr11	120821347	120821416	protein_coding	Csnk1d	intron	ENSMUSG00000025162	ProperStrand	96	2	-inf
chr11	44388790	44388890	LTR	MT2B	ERVL	chr11MT2B44388651	ProperStrand	1	chr11	44388558	44388648	LTR	RLTR26	ERVK	chr11RLTR2644388005	NonProperStrand	1	1	-inf
chrX	97089888	97089988	LINE	Lx9	L1	chrXLx997089907	ProperStrand	1	chrX	97090101	97090191	LINE	Lx9	L1	chrXLx997090095	ProperStrand	1	1	-inf
chr2	126828336	126828448	SINE	B1_Mur4	Alu	chr2B1_Mur4126828290	NonProperStrand	1	chr9	123461882	123461908	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	21192749	21192849	LTR	MMERGLN-int	ERV1	chr13MMERGLN-int21192663	NonProperStrand	1	chr13	21193112	21193202	LTR	MMERGLN-int	ERV1	chr13MMERGLN-int21193120	NonProperStrand	2	1	-inf
chr17	39845737	39845848	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	150823589	150823616	protein_coding	Ninl	intron	ENSMUSG00000068115	ProperStrand	29	1	-3.5309
chr5	114851982	114852006	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr17	24719674	24719810	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	65	1	-9.1428
chr6	120249861	120249927	SINE	ID_B1	B4	chr6ID_B1120249880	ProperStrand	1	chr6	120260659	120260724	SINE	PB1D9	Alu	chr6PB1D9120260647	NonProperStrand	1	1	-inf
chr10	77988140	77988183	LTR	RLTR13D6	ERVK	chr10RLTR13D677987555	ProperStrand	3	chr17	39846660	39846734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39843709	39843799	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr8	36584675	36584735	LTR	RMER19C	ERVK	chr8RMER19C36584655	ProperStrand	1	1	-inf
chr10	53614301	53614352	LINE	L1Md_A	L1	chr10L1Md_A53613443	NonProperStrand	2	chr10	53612809	53612870	LINE	Lx9	L1	chr10Lx953612675	NonProperStrand	1	1	-inf
chr9	97076116	97076206	LINE	L1MB8	L1	chr9L1MB897076117	NonProperStrand	3	chr9	97075999	97076104	SINE	RSINE1	B4	chr9RSINE197075965	NonProperStrand	3	3	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr4	117581966	117582043	protein_coding	Ipo13	intron	ENSMUSG00000033365	NonProperStrand	67	1	-10.3752
chr8	71431134	71431234	protein_coding-noncoding	Lpl	utr3	ENSMUSG00000015568	ProperStrand	1	chr8	71430901	71430991	protein_coding	Lpl	intron	ENSMUSG00000015568	ProperStrand	18	1	-inf
chr15	98738614	98738644	protein_coding	Lmbr1l	intron	ENSMUSG00000022999	ProperStrand	55	chr7	133096577	133096691	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-5.3512
chr10	50750393	50750493	LINE	Lx9	L1	chr10Lx950750376	ProperStrand	1	chr9	103551866	103551956	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-inf
chr15	73672353	73672401	DNA	MER5C	MER1_type	chr15MER5C73672338	ProperStrand	1	chr19	24538375	24538433	protein_coding	Pip5k1b	intron	ENSMUSG00000024867	ProperStrand	56	1	-inf
chr18	60355839	60355939	LTR	ORR1D1-int	MaLR	chr18ORR1D1-int60355810	ProperStrand	1	chr18	60355291	60355381	LTR	RMER15-int	ERVL	chr18RMER15-int60355301	ProperStrand	1	1	-inf
chr14	56530766	56530866	LTR	RLTR1B	ERV1	chr14RLTR1B56530382	NonProperStrand	1	chr14	56530878	56530968	SINE	B2_Mm1a	B2	chr14B2_Mm1a56530889	NonProperStrand	1	1	-inf
chr12	84162413	84162462	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	chr3	62159169	62159229	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	1	-10.2768
chr15	89430556	89430604	LINE	Lx	L1	chr15Lx89430154	ProperStrand	1	chr13	44869586	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	39846483	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	46749583	46749639	SINE	RSINE1	B4	chr13RSINE146749580	NonProperStrand	3	1	-4.3017
chr11	110406422	110406494	lincRNA	Gm11682	intron	ENSMUSG00000085985	ProperStrand	1	chr9	118674951	118674983	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr3	75651272	75651307	LINE	L1Md_A	L1	chr3L1Md_A75645371	ProperStrand	21	chr4	46172143	46172188	protein_coding	Ncbp1	intron	ENSMUSG00000028330	ProperStrand	21	4	-19.9895
chr17	39847636	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	3425711	3425729	protein_coding	Smtn	intron	ENSMUSG00000020439	NonProperStrand	4	1	-3.7035
chr11	117699448	117699519	protein_coding	Afmid	intron	ENSMUSG00000017718	ProperStrand	20	chr1	178205063	178205148	protein_coding	Pld5	utr5	ENSMUSG00000055214	NonProperStrand	32	1	-15.5237
chr15	8247821	8247871	protein_coding	Nipbl	intron	ENSMUSG00000022141	NonProperStrand	21	chr11	33160849	33161115	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-9.5593
chr17	39847736	39847833	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	118078242	118078260	protein_coding	Csgalnact2	intron	ENSMUSG00000042042	NonProperStrand	3	1	-4.3512
chr16	12412166	12412266	LINE	L1VL4	L1	chr16L1VL412412174	NonProperStrand	1	chr16	12411897	12411987	LINE	Lx2B	L1	chr16Lx2B12411824	NonProperStrand	1	1	-inf
chr2	127500838	127500902	LINE	L1Md_A	L1	chr2L1Md_A127500000	NonProperStrand	2	chr17	39843744	39843817	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	2	-inf
chr16	19043371	19043471	LINE	L1VL4	L1	chr16L1VL419043394	NonProperStrand	2	chr16	19043253	19043343	LTR	ORR1B2	MaLR	chr16ORR1B219043275	NonProperStrand	1	1	-inf
chr17	39845360	39845439	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr15	36994950	36995019	LTR	LTRIS2	ERV1	chr15LTRIS236994499	NonProperStrand	3	1	-8.2800
mmu-miR-293-3p	0	22	miRNA	mmu-miR-293-3p	.	mmu-miR-293-3p	ProperStrand	1	chr13	8891396	8891500	protein_coding	Idi1	utr3	ENSMUSG00000058258	ProperStrand	10	1	-inf
chr11	57693156	57693228	Low_complexity	CT-rich	Low_complexity	chr11CT-rich57693108	ProperStrand	1	chr4	82297729	82297811	protein_coding	Nfib	intron	ENSMUSG00000008575	ProperStrand	35	1	-inf
chr9	85947287	85947378	LINE	L1_Mus1	L1	chr9L1_Mus185947219	ProperStrand	1	chr4	70222189	70222289	LTR	MurERV4_19-int	ERVK	chr4MurERV4_19-int70222102	NonProperStrand	4	1	-inf
chr2	66007002	66007047	LINE	Lx4A	L1	chr2Lx4A66006673	ProperStrand	1	chr9	22654756	22654825	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	126	1	-inf
chr18	60512768	60512858	LTR	RMER15	ERVL	chr18RMER1560512700	NonProperStrand	1	chr18	60512474	60512574	SINE	B4	B4	chr18B460512309	NonProperStrand	1	1	-inf
chr3	110560262	110560362	LINE	L1_Mus1	L1	chr3L1_Mus1110560149	NonProperStrand	1	chr3	110560083	110560173	LINE	Lx7	L1	chr3Lx7110559720	NonProperStrand	1	1	-inf
chr8	103536288	103536378	LINE	Lx9	L1	chr8Lx9103535592	NonProperStrand	1	chr8	103536447	103536547	SINE	B1_Mus2	Alu	chr8B1_Mus2103536469	NonProperStrand	1	1	-inf
chr2	154863956	154864034	protein_coding	a	intron	ENSMUSG00000027596	ProperStrand	61	chr7	34987730	34987810	protein_coding	Gpi1	intron	ENSMUSG00000036427	NonProperStrand	43	1	-12.6619
chr17	39846851	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	6141750	6141847	protein_coding	Batf2	intron	ENSMUSG00000039699	ProperStrand	2	1	-5.3533
chr7	16327186	16327257	LINE	Lx3C	L1	chr7Lx3C16327191	ProperStrand	20	chr9	123461989	123462017	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr11	11806166	11806196	LTR	ORR1A2	MaLR	chr11ORR1A211806121	NonProperStrand	1	chr17	39847702	39847794	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	47186396	47186486	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	chr1	79607138	79607238	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	10	1	-18.4947
chr19	26080650	26080750	SINE	MIR	MIR	chr19MIR26080666	NonProperStrand	1	chr7	47188353	47188443	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	1	-inf
chr2	180258052	180258248	protein_coding	Ntsr1	intron	ENSMUSG00000027568	ProperStrand	19	chr2	156095420	156095507	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	96	1	-13.4116
chr10	25287863	25287923	LINE	L1VL2	L1	chr10L1VL225287808	ProperStrand	2	chr7	28419805	28419901	protein_coding	Akt2	intron	ENSMUSG00000004056	NonProperStrand	46	1	-20.5155
chr9	106708456	106708544	SINE	B1F	Alu	chr9B1F106708390	NonProperStrand	1	chr4	138154857	138154904	protein_coding	Vwa5b1	intron	ENSMUSG00000028753	NonProperStrand	18	1	-inf
chr9	103106477	103119746	protein_coding	Trf	exon	ENSMUSG00000032554	NonProperStrand	2	chr9	103106654	103119701	protein_coding	Gm20425	intron	ENSMUSG00000090639	NonProperStrand	28	2	-inf
chr17	39843936	39843999	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr1	112540328	112540347	LTR	ORR1A2	MaLR	chr1ORR1A2112540253	ProperStrand	1	1	-inf
chr5	121205659	121206673	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr10	42856766	42856795	protein_coding	Sobp	intron	ENSMUSG00000038248	ProperStrand	10	1	-13.5533
chr8	45012240	45012330	LINE	L1Md_T	L1	chr8L1Md_T45011967	ProperStrand	1	chr8	40077614	40077714	protein_coding	Tusc3	intron	ENSMUSG00000039530	NonProperStrand	3	1	-inf
chr5	33518147	33518210	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr12	79434016	79434112	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-4.1279
chr17	39848162	39848192	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	14831218	14831237	SINE	B1_Mus2	Alu	chr14B1_Mus214831188	NonProperStrand	1	1	-inf
chr2	150538940	150539030	LINE	L1M4c	L1	chr2L1M4c150538906	NonProperStrand	1	chr2	150538821	150538921	SINE	B3	B2	chr2B3150538764	ProperStrand	1	1	-inf
chr19	25701602	25701702	Low_complexity	C-rich	Low_complexity	chr19C-rich25701517	ProperStrand	1	chr19	25701324	25701414	Low_complexity	CT-rich	Low_complexity	chr19CT-rich25701311	ProperStrand	1	1	-inf
chr1	63514149	63514274	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chr7	113332845	113332862	protein_coding	Gvin1	intron	ENSMUSG00000045868	NonProperStrand	5	1	-13.2211
chr10	19340141	19340241	LINE	L1_Mur2	L1	chr10L1_Mur219339953	ProperStrand	1	chr10	19340499	19340589	LINE	Lx4A	L1	chr10Lx4A19340353	NonProperStrand	1	1	-inf
chr5	146261169	146261229	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	62159183	62159231	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	1	-5.9062
chr8	11830888	11830988	protein_coding-noncoding	Arhgef7	utr5	ENSMUSG00000031511	ProperStrand	4	chr8	11830133	11830223	protein_coding	Arhgef7	intron	ENSMUSG00000031511	ProperStrand	147	3	-21.8120
chrX	3226952	3227042	LINE	L1_Mus3	L1	chrXL1_Mus33226212	NonProperStrand	1	chr19	37476139	37476239	protein_coding	Kif11	intron	ENSMUSG00000012443	ProperStrand	2	1	-inf
chr2	71794379	71794482	lincRNA	Gm13746	intron	ENSMUSG00000087345	ProperStrand	12	chr8	125745269	125745285	protein_coding	4732415M23Rik	intron	ENSMUSG00000048478	NonProperStrand	1	1	-inf
chr7	130648629	130648729	LINE	Lx8	L1	chr7Lx8130648639	NonProperStrand	2	chr7	130648516	130648606	SINE	B3	B2	chr7B3130648418	NonProperStrand	1	1	-inf
chr17	39846941	39846970	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	96786824	96786843	protein_coding	Nup93	intron	ENSMUSG00000032939	ProperStrand	4	1	-3.6552
chr5	53588546	53588670	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	chr8	79682595	79682625	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	1	-9.1239
chr13	74562242	74562285	LINE	L1Md_F2	L1	chr13L1Md_F274556929	ProperStrand	5	chr5	31069218	31069556	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	2	-21.4638
chr6	60182311	60182411	LINE	L1_Mur1	L1	chr6L1_Mur160182080	ProperStrand	1	chr6	60182441	60182531	LINE	L1_Mur1	L1	chr6L1_Mur160182403	ProperStrand	1	1	-inf
chr19	4810502	4810563	protein_coding	Rbm14	intron	ENSMUSG00000006456	ProperStrand	194	chr2	156103049	156103129	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	96	1	-8.7273
chr17	39848099	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr18	9989460	9989489	protein_coding	Thoc1	intron	ENSMUSG00000024287	ProperStrand	14	1	-4.0485
chr12	67666693	67666783	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr9	24419775	24419875	protein_coding	Dpy19l2	intron	ENSMUSG00000085576	ProperStrand	89	3	-inf
chr2	27341259	27341331	protein_coding	Brd3	intron	ENSMUSG00000026918	ProperStrand	76	chr5	114852002	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-8.8295
chr6	137101389	137101429	protein_coding	Rerg	intron	ENSMUSG00000030222	ProperStrand	9	chr5	122474726	122474808	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	1	-14.1418
chr15	59035430	59035503	LINE	L1MB3	L1	chr15L1MB359035396	ProperStrand	1	chr2	166951338	166952334	protein_coding	Kcnb1	intron	ENSMUSG00000050556	NonProperStrand	23	1	-inf
chr10	42251959	42252008	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	chr16	43488813	43488872	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	1	-6.5011
chr17	35834882	35834921	protein_coding	Ddr1	utr5	ENSMUSG00000003534	ProperStrand	232	chr9	78479370	78479464	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-4.8538
chr17	39847843	39847871	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	75337467	75337485	protein_coding	Lrch1	intron	ENSMUSG00000068015	ProperStrand	3	1	-4.3512
chr17	39847736	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	44776354	44776423	SINE	B3	B2	chr9B344776332	ProperStrand	1	1	-inf
chr10	3999911	3999996	LINE	L1_Mur2	L1	chr10L1_Mur23997246	NonProperStrand	6	chr9	123461943	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr13	37948735	37948778	protein_coding	Rreb1	intron	ENSMUSG00000039087	ProperStrand	91	chr9	59678205	59678816	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-5.4711
chr6	28554620	28554668	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr7	109522010	109522120	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-4.4189
chr6	3201509	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	85067331	85067423	Other	RMER1A	Other	chr2RMER1A85066680	NonProperStrand	3	1	-9.0398
chr8	25766935	25767009	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	40	chr9	62796103	62796142	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-11.6045
chr3	62498327	62498410	LTR	IAPEz-int	ERVK	chr3IAPEz-int62497083	NonProperStrand	1	chr9	110281288	110281316	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr4	3835230	3835285	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr13	97190561	97190601	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.1223
chr17	39848099	39848469	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	13451731	13463820	protein_coding	Gpr137b	intron	ENSMUSG00000021306	NonProperStrand	23	2	-5.4039
chr2	118930493	118930583	protein_coding	Casc5	utr3	ENSMUSG00000027326	ProperStrand	37	chr13	48904667	48904767	protein_coding	Phf2	intron	ENSMUSG00000038025	ProperStrand	92	1	-12.1394
chr1	112457574	112457601	LINE	Lx	L1	chr1Lx112456930	ProperStrand	1	chr17	39847891	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	12450758	12697699	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	30	chr9	123461957	123462082	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.1898
chr14	17155239	17155343	LINE	L1Md_F3	L1	chr14L1Md_F317155190	ProperStrand	1	chr4	88009155	88009195	protein_coding	BC057079	intron	ENSMUSG00000038368	NonProperStrand	76	1	-inf
chr7	89955350	89955425	LINE	Lx5	L1	chr7Lx589955276	NonProperStrand	2	chr17	39847211	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39847659	39847722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	60766549	60766582	LTR	MTC	MaLR	chr19MTC60766529	ProperStrand	2	1	-5.4040
chr1	36423720	36423796	protein_coding	4632411B12Rik	intron	ENSMUSG00000010453	ProperStrand	18	chr11	74842821	74842898	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	2	-19.4291
chr6	6191308	6217041	lincRNA	RP23-360N5.1	exon	ENSMUSG00000093482	NonProperStrand	44	chr16	90014225	90014324	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	1	-6.9299
chr17	39847276	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	125560882	125560945	SINE	B2_Mm2	B2	chr4B2_Mm2125560882	NonProperStrand	1	1	-inf
chr5	146261042	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	13905256	13905280	protein_coding	Mllt4	intron	ENSMUSG00000068036	ProperStrand	17	1	-7.5728
chr16	96121750	96121834	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	ProperStrand	119	chr3	135271262	135271290	protein_coding-noncoding	Nfkb1	utr3	ENSMUSG00000028163	NonProperStrand	2	1	-18.0358
chr17	39847531	39848064	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	8724867	8724944	SINE	B3A	B2	chr19B3A8724791	NonProperStrand	14	5	-8.6763
chr8	70759362	70759462	LTR	RLTR31_Mm	ERVK	chr8RLTR31_Mm70759326	NonProperStrand	13	chr8	70759120	70759210	SINE	B3	B2	chr8B370759062	ProperStrand	9	9	-inf
chr17	39846659	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	96254455	96254508	Low_complexity	AT_rich	Low_complexity	chr11AT_rich96254447	ProperStrand	1	1	-inf
chr18	57547013	57547113	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	chr18	56751395	56751485	protein_coding	1700065I17Rik	intron	ENSMUSG00000032900	ProperStrand	18	1	-16.7772
chr9	123461930	123461984	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	34844382	34844486	protein_coding	Cga	intron	ENSMUSG00000028298	NonProperStrand	13	1	-3.8693
chr2	113715648	113715665	LINE	L1_Mur3	L1	chr2L1_Mur3113715598	ProperStrand	1	chr10	4321598	4321728	LTR	RMER4B	ERVK	chr10RMER4B4321525	ProperStrand	1	1	-inf
chr2	28534763	28534863	protein_coding	Tsc1	intron	ENSMUSG00000026812	ProperStrand	110	chr9	35436767	35436857	protein_coding	Pate2	intron	ENSMUSG00000074452	ProperStrand	55	1	-10.9798
chr5	56177659	56177749	LINE	Lx6	L1	chr5Lx656175961	ProperStrand	1	chr5	56177913	56178013	LTR	RMER12B	ERVK	chr5RMER12B56177932	ProperStrand	1	1	-inf
chr4	15282243	15282293	LTR	MTA_Mm-int	MaLR	chr4MTA_Mm-int15281836	NonProperStrand	1	chr13	97190561	97190600	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr15	83241868	83241953	protein_coding	Pacsin2	intron	ENSMUSG00000016664	ProperStrand	107	chr9	3356717	3356767	protein_coding	Alkbh8	intron	ENSMUSG00000025899	ProperStrand	14	1	-13.8212
chr12	69848208	69848298	LTR	IAPEz-int	ERVK	chr12IAPEz-int69847862	NonProperStrand	1	chr17	39846747	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	130734972	130735072	DNA	Arthur1	Tip100	chr7Arthur1130734864	NonProperStrand	1	chr7	130735373	130735463	SINE	B1_Mur4	Alu	chr7B1_Mur4130735390	ProperStrand	1	1	-inf
chr8	43286521	43286548	LINE	L1Md_T	L1	chr8L1Md_T43286179	NonProperStrand	1	chr11	120073845	120075567	LTR	MTC-int	MaLR	chr11MTC-int120073586	ProperStrand	5	1	-inf
chr7	130706958	130707048	LINE	Lx6	L1	chr7Lx6130706782	NonProperStrand	3	chr1	91964458	91964507	protein_coding	Iqca	intron	ENSMUSG00000026301	ProperStrand	175	1	-16.2498
chr17	39848099	39848165	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	54487921	54487940	protein_coding	Rapgef6	intron	ENSMUSG00000037533	NonProperStrand	5	1	-6.1691
chr1	110448876	110448966	LTR	RLTR10	ERVK	chr1RLTR10110448653	NonProperStrand	1	chr14	24305554	24305654	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-inf
chr17	39847207	39847267	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	115862176	115862225	protein_coding	Kcnmb4	intron	ENSMUSG00000054934	NonProperStrand	3	1	-5.4882
chrX	151908902	151909445	LINE	Lx6	L1	chrXLx6151908502	ProperStrand	15	chrX	151909456	151909563	LINE	Lx6	L1	chrXLx6151909229	ProperStrand	15	9	-inf
chr8	54128000	54128100	LINE	Lx2	L1	chr8Lx254128023	ProperStrand	1	chr8	54127927	54128017	LINE	Lx9	L1	chr8Lx954127863	ProperStrand	1	1	-inf
chr1	37312485	37312594	protein_coding	Cnga3	intron	ENSMUSG00000026114	ProperStrand	23	chr13	97190562	97190591	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr12	79321606	79321696	SINE	RSINE1	B4	chr12RSINE179321563	ProperStrand	2	chr12	79321726	79321826	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n79321715	ProperStrand	2	2	-inf
chr11	94139465	94139555	SINE	B3	B2	chr11B394139404	NonProperStrand	1	chr11	94139585	94139685	SINE	ID_B1	B4	chr11ID_B194139585	NonProperStrand	1	1	-inf
chr2	69077348	69077454	protein_coding	Abcb11	intron	ENSMUSG00000027048	NonProperStrand	32	chr11	88514465	88514506	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-7.5154
chr10	117062078	117062113	DNA	URR1B	MER1_type	chr10URR1B117061992	NonProperStrand	5	chr17	39848008	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr7	132679284	132679374	LTR	MurERV4-int	ERVK	chr7MurERV4-int132679220	NonProperStrand	4	chr7	132679369	132679469	LTR	MurERV4-int	ERVK	chr7MurERV4-int132679277	NonProperStrand	4	4	-inf
chr1	180588039	180588150	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	chr1	177083106	177083152	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	1	-9.1993
chr12	98766790	98766870	LINE	Lx3C	L1	chr12Lx3C98766668	ProperStrand	1	chr12	91008840	91008889	protein_coding	Nrxn3	intron	ENSMUSG00000066392	NonProperStrand	182	1	-inf
chr17	36459301	36459391	LTR	RMER6D	ERVK	chr17RMER6D36459196	NonProperStrand	1	chr17	36459139	36459239	SINE	B3	B2	chr17B336459125	NonProperStrand	1	1	-inf
chr7	121692492	121692592	LINE	Lx5	L1	chr7Lx5121691744	NonProperStrand	1	chr7	121692785	121692875	LINE	Lx5	L1	chr7Lx5121692580	NonProperStrand	1	1	-inf
chr17	39847174	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	84959605	84959643	SINE	B2_Mm1t	B2	chr12B2_Mm1t84959550	ProperStrand	1	1	-inf
chr9	43124750	43124766	protein_coding	Trim29	intron	ENSMUSG00000032013	NonProperStrand	4	chr1	72226301	72226422	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-17.0514
chr4	127030597	127030655	protein_coding	Gjb4	intron	ENSMUSG00000046623	NonProperStrand	20	chr1	43548863	43548911	protein_coding	Nck2	intron	ENSMUSG00000066877	ProperStrand	93	1	-13.3711
chr17	74721538	74721585	protein_coding	Dpy30	intron	ENSMUSG00000024067	NonProperStrand	11	chr17	74751124	74770277	protein_coding	Spast	intron	ENSMUSG00000024068	ProperStrand	20	1	-17.7736
chr7	116225359	116225459	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	chr7	116219643	116219733	snRNA	ENSMUSG00000064747_U6	.	ENSMUSG00000064747	ProperStrand	3	3	-inf
chr18	65511838	65511938	protein_coding	Alpk2	intron	ENSMUSG00000032845	NonProperStrand	17	chr18	65512139	65512229	protein_coding	Alpk2	intron	ENSMUSG00000032845	ProperStrand	4	1	-inf
chr11	17200040	17200083	LINE	Lx8	L1	chr11Lx817199817	NonProperStrand	1	chr17	39846816	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	4379979	4380079	LTR	ORR1A2-int	MaLR	chr13ORR1A2-int4379873	ProperStrand	1	chr13	4380311	4380401	LTR	ORR1A2	MaLR	chr13ORR1A24380239	ProperStrand	1	1	-inf
chrX	130041299	130041389	LTR	MLT1A0	MaLR	chrXMLT1A0130041136	ProperStrand	1	chr9	123461937	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr19	5800130	5800179	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr12	81970796	81970835	protein_coding	4933426M11Rik	intron	ENSMUSG00000021133	ProperStrand	48	1	-4.8681
chrX	13527836	13527896	LTR	IAPEz-int	ERVK	chrXIAPEz-int13527809	ProperStrand	1	chr4	150596718	150596749	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-inf
chr15	51879702	51879772	LINE	L1_Mur1	L1	chr15L1_Mur151879172	NonProperStrand	1	chr2	5379272	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr13	111723634	111723734	LINE	Lx	L1	chr13Lx111723631	ProperStrand	1	chr13	111723922	111724012	SINE	B4	B4	chr13B4111723943	NonProperStrand	1	1	-inf
chr12	111764395	111764428	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	ProperStrand	236	chr4	34559918	34559961	protein_coding	Orc3	intron	ENSMUSG00000040044	NonProperStrand	17	1	-11.8377
chr13	9834306	9834441	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr9	110215741	110215762	protein_coding	2610002I17Rik	intron	ENSMUSG00000054836	ProperStrand	17	1	-11.6666
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	46220383	46220494	protein_coding	Pitx3	intron	ENSMUSG00000025229	NonProperStrand	4	1	-3.7035
chr10	80902627	80902674	LTR	RMER19B	ERVK	chr10RMER19B80902309	NonProperStrand	2	chr17	39847506	39847543	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr10	99186974	99186993	LINE	L1Md_A	L1	chr10L1Md_A99181587	ProperStrand	2	chr7	73620636	73620758	SINE	B4A	B4	chr7B4A73620667	NonProperStrand	2	2	-inf
chr4	137045978	137046107	protein_coding	Hspg2	intron	ENSMUSG00000028763	NonProperStrand	25	chr4	149120033	149120049	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.3249
chr7	91971655	91971755	LINE	L1_Mur2	L1	chr7L1_Mur291971681	ProperStrand	1	chr7	91971494	91971584	LTR	ORR1A2	MaLR	chr7ORR1A291971351	NonProperStrand	1	1	-inf
chr5	55338878	55338978	LINE	Lx3A	L1	chr5Lx3A55335413	ProperStrand	1	chr5	55339051	55339141	LINE	Lx3B	L1	chr5Lx3B55339029	ProperStrand	1	1	-inf
chr4	133869503	133869544	SINE	B2_Mm1a	B2	chr4B2_Mm1a133869491	NonProperStrand	3	chr12	91111286	91111400	protein_coding	Nrxn3	intron	ENSMUSG00000066392	NonProperStrand	182	1	-16.1582
chr17	39847877	39847956	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	88740211	88740229	processed_transcript	4930556N13Rik	.	ENSMUSG00000092399	NonProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr2	174281351	174281456	protein_coding	Tubb1	intron	ENSMUSG00000016255	NonProperStrand	27	1	-11.4218
chr11	116023885	116023985	protein_coding	Fbf1	intron	ENSMUSG00000020776	ProperStrand	74	chr19	5274415	5274466	protein_coding	Sf3b2	utr3	ENSMUSG00000024853	ProperStrand	58	1	-11.6688
chr7	75951597	75951687	LINE	Lx5	L1	chr7Lx575951554	NonProperStrand	1	chr7	103550797	103550897	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr9	31343061	31343161	LINE	L1Md_T	L1	chr9L1Md_T31340734	NonProperStrand	1	chr9	31343412	31343502	LINE	L1Md_T	L1	chr9L1Md_T31343193	NonProperStrand	1	1	-inf
chr13	54132278	54132378	LINE	Lx3_Mus	L1	chr13Lx3_Mus54131832	NonProperStrand	1	chr13	54132581	54132671	SINE	B4A	B4	chr13B4A54132511	NonProperStrand	1	1	-inf
chr11	87426782	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr13	97190541	97197868	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	4	-15.4157
chr2	104929727	104929825	antisense	AI314831	.	ENSMUSG00000074987	NonProperStrand	19	chr5	119209645	119209664	protein_coding	Med13l	intron	ENSMUSG00000018076	NonProperStrand	3	1	-19.6111
chr11	115886241	115886284	protein_coding	H3f3b	intron	ENSMUSG00000016559	NonProperStrand	1	chr11	115865800	115865898	protein_coding	Itgb4	intron	ENSMUSG00000020758	ProperStrand	37	1	-inf
chr2	130872950	130873040	SINE	B3A	B2	chr2B3A130872947	NonProperStrand	3	chr5	38444667	38444767	protein_coding	Stx18	intron	ENSMUSG00000029125	ProperStrand	3	1	-20.2168
chr10	4357538	4357759	LINE	L1_Mus1	L1	chr10L1_Mus14357519	ProperStrand	9	chr17	39847810	39847997	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-3.9821
chr9	121453259	121453359	LTR	MYSERV-int	ERVK	chr9MYSERV-int121453020	ProperStrand	3	chr9	121448945	121453212	LTR	RLTR15	ERVK	chr9RLTR15121451376	ProperStrand	4	3	-inf
chr2	22744846	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	83501713	83501788	pseudogene	Gm11432	.	ENSMUSG00000081449	ProperStrand	7	1	-11.2142
chr10	79063079	79063179	LTR	MTE-int	MaLR	chr10MTE-int79062596	ProperStrand	2	chr10	79033378	79033468	Satellite	ZP3AR	Satellite	chr10ZP3AR79033351	ProperStrand	1	1	-inf
chr17	32020842	32020921	LINE	L1_Mus2	L1	chr17L1_Mus232019392	NonProperStrand	5	chr17	39846655	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr3	55132647	55132664	protein_coding	Dclk1	intron	ENSMUSG00000027797	ProperStrand	47	chr9	72709510	72709638	protein_coding	Prtg	intron	ENSMUSG00000036030	NonProperStrand	2	1	-19.7598
chr5	134421912	134421939	LINE	Lx8	L1	chr5Lx8134421903	ProperStrand	1	chr5	134432719	134432782	LINE	Lx8	L1	chr5Lx8134432637	NonProperStrand	4	1	-inf
chr11	101604936	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	chr15	8220086	8220116	protein_coding	2410089E03Rik	intron	ENSMUSG00000039801	ProperStrand	47	1	-12.9653
chr8	78647664	78647729	LTR	ORR1D1	MaLR	chr8ORR1D178647441	NonProperStrand	1	chr2	29644603	29644680	protein_coding	Coq4	intron	ENSMUSG00000026798	ProperStrand	35	1	-inf
chr17	70786415	70786524	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr5	65524320	65524351	protein_coding	Klhl5	intron	ENSMUSG00000054920	NonProperStrand	2	1	-15.8845
chr18	40792715	40792769	LTR	ORR1B2	MaLR	chr18ORR1B240792534	ProperStrand	6	chr10	79998144	79998301	protein_coding	Atp8b3	utr3	ENSMUSG00000003341	NonProperStrand	13	1	-inf
chr1	153876440	153876480	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	ProperStrand	8	chr2	29999186	29999954	protein_coding	Tbc1d13	intron	ENSMUSG00000039678	ProperStrand	32	1	-17.3853
chr1	63489301	63489361	LTR	RLTR25B	ERVK	chr1RLTR25B63488567	NonProperStrand	3	chr6	4747688	4747787	Simple_repeat	(TA)n	Simple_repeat	chr6(TA)n4747575	ProperStrand	2	2	-inf
chr10	128826463	128826553	LTR	IAPEz-int	ERVK	chr10IAPEz-int128826236	NonProperStrand	10	chr18	33193455	33193555	protein_coding	Camk4	intron	ENSMUSG00000038128	NonProperStrand	36	1	-16.7426
chr11	109011675	109011718	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	8729117	8729173	protein_coding	Pum2	intron	ENSMUSG00000020594	ProperStrand	67	1	-5.8825
chr8	83571455	83571545	LINE	Lx3_Mus	L1	chr8Lx3_Mus83571406	NonProperStrand	1	chr7	28423469	28423569	protein_coding	Akt2	utr3	ENSMUSG00000004056	NonProperStrand	46	1	-inf
chr5	146260996	146261046	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	73103811	73103908	LTR	MER67C	ERV1	chr9MER67C73103578	NonProperStrand	1	1	-inf
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr11	120147582	120147610	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	136	1	-4.9704
chr17	70963666	70963697	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr17	30918377	30918422	protein_coding	Dnahc8	intron	ENSMUSG00000033826	NonProperStrand	32	1	-7.4594
chr2	26912847	26912914	LTR	ORR1D2	MaLR	chr2ORR1D226912626	NonProperStrand	16	chr9	123461882	123461939	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr19	42100712	42100812	protein_coding	Ubtd1	intron	ENSMUSG00000025171	ProperStrand	6	chr5	53577789	53577879	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	1	-15.0279
chr11	104336268	104336573	LTR	RMER19B	ERVK	chr11RMER19B104335848	ProperStrand	1	chr11	104336572	104338142	SINE	B3	B2	chr11B3104336565	ProperStrand	1	1	-inf
chr17	65936078	65936175	protein_coding	Vapa	intron	ENSMUSG00000024091	ProperStrand	12	chr13	97190601	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.3508
chr8	25817615	25818581	protein_coding	Adam3	intron	ENSMUSG00000031553	ProperStrand	67	chr8	105198743	105198817	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	1	-9.8451
chr17	39847183	39847206	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	127950615	127950632	protein_coding	Tspan9	intron	ENSMUSG00000030352	NonProperStrand	7	1	-3.6430
chr10	128058985	128059057	LTR	MTEa	MaLR	chr10MTEa128058914	ProperStrand	2	chr9	123462081	123462097	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr16	23111299	23111378	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr16	23111373	23111433	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	16	5	-inf
chr4	3532787	3532887	protein_coding-noncoding	Tgs1	utr5	ENSMUSG00000028233	ProperStrand	1	chr4	3532575	3532665	protein_coding	Tgs1	intron	ENSMUSG00000028233	ProperStrand	2	1	-inf
chr6	68609047	68609147	LTR	IAPEz-int	ERVK	chr6IAPEz-int68608963	NonProperStrand	1	chr6	68608725	68608815	LTR	IAPLTR2b	ERVK	chr6IAPLTR2b68608638	NonProperStrand	1	1	-inf
chr5	122158554	122168203	LTR	MLT1F1	MaLR	chr5MLT1F1122158499	NonProperStrand	4	chr5	122168199	122168299	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	3	-inf
chr2	46897331	46897431	LTR	IAPEY2_LTR	ERVK	chr2IAPEY2_LTR46897343	ProperStrand	1	chr11	48888074	48888164	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-inf
chr7	35601600	35602469	SINE	B1_Mur4	Alu	chr7B1_Mur435601565	ProperStrand	1	chr7	35600417	35601522	SINE	ID_B1	B4	chr7ID_B135601330	ProperStrand	1	1	-inf
chr9	123461802	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr10	61776838	61776922	protein_coding	Hk1	intron	ENSMUSG00000037012	ProperStrand	15	1	-3.5950
chr4	132270079	132270145	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr3	84596499	84596529	protein_coding	Arfip1	intron	ENSMUSG00000074513	ProperStrand	40	1	-11.6412
chr2	23029087	23029106	protein_coding-noncoding	Yme1l1	utr5	ENSMUSG00000026775	NonProperStrand	3	chr2	23027733	23027861	protein_coding	Yme1l1	intron	ENSMUSG00000026775	NonProperStrand	28	1	-19.7481
chrX	101705609	101705648	SINE	B1_Mur2	Alu	chrXB1_Mur2101705537	NonProperStrand	2	chr9	123461905	123461977	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr15	96348246	96348302	LINE	L1MD2	L1	chr15L1MD296348175	ProperStrand	1	chr13	75998566	75998612	LTR	RMER13A	ERVK	chr13RMER13A75998488	ProperStrand	2	1	-inf
chr13	67035443	67035533	protein_coding	Ptdss1	intron	ENSMUSG00000021518	NonProperStrand	6	chr19	24261544	24261644	protein_coding	Tjp2	intron	ENSMUSG00000024812	NonProperStrand	8	1	-inf
chr18	63965945	63965980	protein_coding	Wdr7	intron	ENSMUSG00000040560	ProperStrand	39	chr17	86776338	86776452	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	1	-11.0523
chr5	103714767	103714857	LINE	Lx3C	L1	chr5Lx3C103714597	ProperStrand	2	chr17	39847658	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr17	12179841	12179907	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr1	181993269	181993345	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-5.7846
chr17	56905234	56905293	protein_coding	Dus3l	intron	ENSMUSG00000007603	NonProperStrand	12	chr2	5379308	5379357	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.7556
chr15	81613215	81613287	protein_coding	Zc3h7b	intron	ENSMUSG00000022390	ProperStrand	45	chr6	4953085	4953167	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-9.6786
chr16	35981618	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chrX	140983106	140983124	protein_coding	Trpc5	intron	ENSMUSG00000041710	ProperStrand	3	1	-16.2631
chr6	125108698	125108745	protein_coding	Iffo1	intron	ENSMUSG00000038271	ProperStrand	44	chr2	5379290	5379347	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.1476
chr11	69667028	69667093	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr12	85243830	85243924	protein_coding	Numb	intron	ENSMUSG00000021224	ProperStrand	34	1	-10.1614
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	114671840	114672330	SINE	ID_B1	B4	chr11ID_B1114672280	ProperStrand	1	1	-inf
chr17	39844673	39844736	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr11	115479914	115479986	lincRNA	Gm17246	intron	ENSMUSG00000090902	ProperStrand	19	1	-4.7125
chr2	59914189	59917437	protein_coding-noncoding	Baz2b	utr3	ENSMUSG00000026987	ProperStrand	1	chr2	59914059	59914159	protein_coding	Baz2b	intron	ENSMUSG00000026987	ProperStrand	70	1	-inf
chr1	181946305	181946371	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-3.9635
chr5	146193218	146193318	LINE	L1_Mur3	L1	chr5L1_Mur3146193099	NonProperStrand	1	chr2	163081120	163081210	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-inf
chr3	94762994	94763028	antisense	B230398E01Rik	.	ENSMUSG00000087660	ProperStrand	2	chr15	62139931	62140009	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	1	-13.6556
chr8	13136849	13136865	protein_coding	Cul4a	exon	ENSMUSG00000031446	NonProperStrand	1	chr4	148617121	148617183	protein_coding	Kif1b	intron	ENSMUSG00000063077	ProperStrand	77	1	-inf
chr17	39846452	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	154531421	154531509	SINE	B2_Mm2	B2	chr2B2_Mm2154531378	ProperStrand	1	1	-inf
chr8	76988149	76988189	LINE	L1Md_F2	L1	chr8L1Md_F276987225	NonProperStrand	1	chr5	114852004	114852031	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	29762884	29762935	protein_coding	Nom1	intron	ENSMUSG00000001569	ProperStrand	79	1	-6.2642
chr11	21874643	21874733	LINE	L1M3	L1	chr11L1M321874596	ProperStrand	1	chr11	21874953	21875053	SINE	B4A	B4	chr11B4A21874942	ProperStrand	3	1	-inf
chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	59592195	59592271	processed_transcript	Gm9581	.	ENSMUSG00000091562	ProperStrand	3	1	-4.3017
chr1	100180181	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr13	23574144	23574216	protein_coding	Btn2a2	intron	ENSMUSG00000053216	ProperStrand	18	1	-13.1100
chr13	35754208	35754308	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	chr13	35754016	35754106	snRNA	ENSMUSG00000065178_U1	.	ENSMUSG00000065178	ProperStrand	1	1	-inf
chr9	106431152	106431252	Other	RMER1A	Other	chr9RMER1A106431168	ProperStrand	15	chr9	106430341	106431127	Other	RMER1B	Other	chr9RMER1B106430884	ProperStrand	6	1	-inf
chr3	40702768	40702868	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	chr17	27815182	27815272	protein_coding	Pacsin1	intron	ENSMUSG00000040276	NonProperStrand	25	1	-15.1426
chr17	63649879	63649898	protein_coding	Fbxl17	intron	ENSMUSG00000023965	NonProperStrand	24	chr13	44869574	44869643	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.2879
chr15	37988269	37988377	protein_coding	Ubr5	intron	ENSMUSG00000037487	ProperStrand	87	chr9	118674951	118674983	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.2444
chr17	31907127	31907194	LTR	MTE2b	MaLR	chr17MTE2b31907132	NonProperStrand	1	chr6	3201469	3201546	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr17	39847796	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	53624008	53624066	SINE	B1F	Alu	chr5B1F53623993	ProperStrand	1	1	-inf
chr11	19963962	19964032	protein_coding	Actr2	utr3	ENSMUSG00000020152	NonProperStrand	187	chr8	78093542	78093571	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-5.6855
chr5	77739383	77739473	protein_coding	Polr2b	utr5	ENSMUSG00000029250	NonProperStrand	1	chr5	77739036	77739136	protein_coding	Noa1	utr5	ENSMUSG00000036285	ProperStrand	1	1	-inf
chr17	57205732	57206192	protein_coding	Dennd1c	exon	ENSMUSG00000002668	ProperStrand	1	chr9	123461993	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39846009	39846109	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr18	78025934	78026024	LTR	MLT1F	MaLR	chr18MLT1F78025910	ProperStrand	1	1	-inf
chr2	34738014	34738075	protein_coding	D730039F16Rik	intron	ENSMUSG00000026870	NonProperStrand	9	chr10	62867486	62867557	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-15.1460
chr6	3201517	3201544	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr18	64504434	64504460	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	1	-3.9945
chr9	15314843	15314913	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	chr15	76067193	76067355	protein_coding	Parp10	intron	ENSMUSG00000063268	ProperStrand	64	1	-10.3248
chr4	118132125	118132235	SINE	B1_Mur1	Alu	chr4B1_Mur1118132108	NonProperStrand	1	chr4	118111168	118111211	SINE	B3	B2	chr4B3118111152	NonProperStrand	1	1	-inf
chr10	81487441	81487457	LINE	L1Md_F2	L1	chr10L1Md_F281486805	ProperStrand	42	chr9	62377662	62377750	protein_coding	Coro2b	intron	ENSMUSG00000041729	NonProperStrand	105	1	-11.6177
chr10	77987445	77987485	LINE	L1M2	L1	chr10L1M277987136	ProperStrand	1	chr5	142904605	142904662	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-inf
chr17	39847381	39847418	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	83366638	83366725	Simple_repeat	(TCTCC)n	Simple_repeat	chr10(TCTCC)n83366522	ProperStrand	4	1	-3.7035
chr10	93819106	93819196	protein_coding	Tmcc3	intron	ENSMUSG00000020023	NonProperStrand	36	chr10	28428155	28428255	protein_coding	Themis	intron	ENSMUSG00000049109	ProperStrand	49	1	-13.4662
chr17	56426833	56426893	protein_coding	Plin3	intron	ENSMUSG00000024197	ProperStrand	33	chr2	146259976	146260041	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	ProperStrand	101	1	-12.1839
chr17	46432163	46432181	LTR	MLT1H	MaLR	chr17MLT1H46432117	ProperStrand	1	chr12	79422649	79422742	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr7	134879533	134879563	LTR	MERVL-int	ERVL	chr7MERVL-int134876104	NonProperStrand	19	chr15	102133520	102136207	protein_coding	Espl1	exon	ENSMUSG00000058290	NonProperStrand	3	1	-19.6111
chr1	165620148	165620228	LINE	L1Md_F3	L1	chr1L1Md_F3165620153	ProperStrand	1	chr17	39843840	39843910	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr8	80739314	80739404	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr4	146067533	146067633	protein_coding	Gm13051	intron	ENSMUSG00000066009	ProperStrand	9	1	-11.1599
chr5	67781357	67781412	LINE	L1Md_A	L1	chr5L1Md_A67781101	NonProperStrand	1	chr5	67785467	67785550	protein_coding	Bend4	utr3	ENSMUSG00000092060	ProperStrand	30	1	-inf
chr11	49205130	49205174	LINE	L1Md_F2	L1	chr11L1Md_F249204915	ProperStrand	1	chr9	123056433	123056452	SINE	PB1D7	Alu	chr9PB1D7123056431	ProperStrand	1	1	-inf
chr3	67081751	67081816	protein_coding	Rsrc1	intron	ENSMUSG00000034544	ProperStrand	37	chr2	5379273	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.4866
chr10	46777197	46777217	LINE	L1_Mus3	L1	chr10L1_Mus346777021	NonProperStrand	1	chr17	39848199	39848229	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr10	82890383	82890452	LTR	RLTR1B	ERV1	chr10RLTR1B82890050	NonProperStrand	1	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr9	114561217	114561259	SINE	B1_Mur3	Alu	chr9B1_Mur3114561207	ProperStrand	1	chr9	114561143	114561219	SINE	B3A	B2	chr9B3A114561086	ProperStrand	22	1	-inf
chr17	39848328	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	58060423	58060528	SINE	B3	B2	chr11B358060323	ProperStrand	6	1	-5.7734
chr17	32164165	32164219	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	chr17	50420127	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-8.8234
chr15	62106899	62106942	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr9	121727979	121728032	protein_coding	Ccdc13	intron	ENSMUSG00000079235	NonProperStrand	17	1	-8.7550
chr9	45515392	45515453	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	chr2	157757347	157757425	protein_coding	Vstm2l	intron	ENSMUSG00000037843	ProperStrand	46	1	-10.4332
chr17	39846818	39846871	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	44016263	44016341	protein_coding	Gramd1c	utr5	ENSMUSG00000036292	ProperStrand	2	1	-5.3533
chr19	6085176	6085415	protein_coding	Cdca5	exon	ENSMUSG00000024791	ProperStrand	15	chr9	123461800	123461860	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr1	74478057	74479677	protein_coding	Vil1	intron	ENSMUSG00000026175	NonProperStrand	13	chr1	74479734	74486055	protein_coding	Usp37	exon	ENSMUSG00000033364	ProperStrand	27	2	-inf
chr17	39846731	39846855	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	147808716	147808737	protein_coding	Ubiad1	utr3	ENSMUSG00000047719	ProperStrand	4	1	-3.6552
chr6	72707163	72707259	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	chr11	95297382	95297437	protein_coding	Spop	intron	ENSMUSG00000057522	NonProperStrand	27	1	-10.5561
chr8	69922695	69922795	LTR	MTEb	MaLR	chr8MTEb69922611	ProperStrand	1	chr4	132310237	132310327	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-inf
chr5	115561214	115561391	protein_coding	Acads	exon	ENSMUSG00000029545	ProperStrand	2	chr13	67809866	67809966	protein_coding	Zfp71-rs1	intron	ENSMUSG00000071281	ProperStrand	2	1	-19.8939
chr2	35669296	35669411	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	chr2	121783124	121783151	protein_coding	Ctdspl2	intron	ENSMUSG00000033411	NonProperStrand	29	2	-14.5090
chr15	83235595	83235621	protein_coding	Pacsin2	intron	ENSMUSG00000016664	ProperStrand	107	chr5	3692183	3692199	protein_coding	Ankib1	utr3	ENSMUSG00000040351	NonProperStrand	8	1	-15.0034
chr14	83707469	83707559	LINE	L1_Mur1	L1	chr14L1_Mur183707392	NonProperStrand	1	chr14	83707563	83707663	LINE	L1_Mur1	L1	chr14L1_Mur183707537	NonProperStrand	1	1	-inf
chr17	39845764	39845835	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	110306877	110306914	protein_coding	Ptpn23	intron	ENSMUSG00000036057	NonProperStrand	3	1	-8.2800
chr17	39847611	39847627	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	86201609	86201704	SINE	RSINE1	B4	chr11RSINE186201595	ProperStrand	1	1	-inf
chr6	3201411	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	3219238	3219264	miRNA	Mir292	.	ENSMUSG00000078041	ProperStrand	8	1	-6.8272
chr11	6405840	6405940	LTR	RLTR19A	ERVK	chr11RLTR19A6405844	ProperStrand	4	chr11	6405703	6405793	SINE	B1_Mus1	Alu	chr11B1_Mus16405682	NonProperStrand	2	2	-inf
chr19	3481558	3481610	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	chr6	146769919	146770031	protein_coding	Arntl2	intron	ENSMUSG00000040187	ProperStrand	11	1	-12.9471
chr11	61929346	61929389	protein_coding	Specc1	intron	ENSMUSG00000042331	NonProperStrand	50	chr9	78479162	78479311	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-7.8714
chr7	128444210	128444282	SINE	B4A	B4	chr7B4A128444221	ProperStrand	3	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr5	41044204	41044294	LINE	L1_Mus4	L1	chr5L1_Mus441043555	ProperStrand	1	chr5	41044404	41044504	LINE	Lx2A	L1	chr5Lx2A41044283	ProperStrand	1	1	-inf
chrX	77515165	77515246	LINE	Lx9	L1	chrXLx977514970	NonProperStrand	2	chr10	42525177	42525248	protein_coding	Sec63	intron	ENSMUSG00000019802	ProperStrand	36	1	-20.7183
chrX	159578525	159578569	LINE	Lx7	L1	chrXLx7159577967	NonProperStrand	4	chr15	98931559	98931613	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	1	-18.6637
chr11	30930134	30930150	protein_coding	Asb3	intron	ENSMUSG00000020305	NonProperStrand	27	chr13	109813951	109814074	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-9.5882
chr2	181401478	181401578	SINE	B1_Mm	Alu	chr2B1_Mm181401407	NonProperStrand	1	chr2	181401121	181401213	SINE	B2_Mm1t	B2	chr2B2_Mm1t181401147	ProperStrand	1	1	-inf
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr1	102328622	102328643	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	ProperStrand	27	1	-6.0527
chr9	123461835	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	107867702	107867751	protein_coding	Zyg11a	intron	ENSMUSG00000034645	NonProperStrand	13	1	-3.8693
chr2	12405606	12405633	LINE	Lx4B	L1	chr2Lx4B12404778	ProperStrand	2	chr17	39847273	39847343	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr15	85177751	85177789	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr11	88553752	88553780	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-3.6575
chr10	127066002	127066198	LINE	L1M4	L1	chr10L1M4127066127	ProperStrand	4	chr10	127065208	127065986	LINE	L2c	L2	chr10L2c127065156	NonProperStrand	3	1	-inf
chr5	77349150	77349193	protein_coding	Ppat	intron	ENSMUSG00000029246	NonProperStrand	13	chr2	71873543	71875464	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-13.4546
chr17	39846718	39846772	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	73826352	73826369	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n73826340	ProperStrand	4	1	-3.6552
chr5	142467678	142467817	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	chrX	99218919	99218937	protein_coding	Nhsl2	intron	ENSMUSG00000079481	ProperStrand	20	1	-10.9839
chr3	19302494	19302584	LINE	L1M4b	L1	chr3L1M4b19302250	ProperStrand	3	chr3	19303197	19303297	LINE	L1M4b	L1	chr3L1M4b19303084	ProperStrand	1	1	-inf
chr2	163418992	163419045	LINE	L1MA5	L1	chr2L1MA5163418987	ProperStrand	1	chr3	62500847	62500931	LTR	IAPEz-int	ERVK	chr3IAPEz-int62500000	NonProperStrand	3	1	-inf
chr17	39848099	39848154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	4781511	4781560	LTR	RMER16-int	ERVK	chr1RMER16-int4781013	ProperStrand	5	1	-6.1691
chr9	123462115	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	35754160	35754276	protein_coding	Atp11b	utr3	ENSMUSG00000037400	ProperStrand	8	1	-4.8360
chr2	176807985	176808047	LINE	L1_Mur3	L1	chr2L1_Mur3176807880	ProperStrand	1	chr2	176808470	176808522	LINE	L1_Mus3	L1	chr2L1_Mus3176808436	ProperStrand	1	1	-inf
chr7	64871986	64872021	protein_coding	Gabrb3	intron	ENSMUSG00000033676	NonProperStrand	14	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.9012
chr17	39846175	39846209	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	102310559	102311459	SINE	B2_Mm2	B2	chr11B2_Mm2102311349	ProperStrand	1	1	-inf
chr10	75669659	75669747	LTR	ORR1B2	MaLR	chr10ORR1B275669615	ProperStrand	1	chr10	75668896	75668927	SINE	B1_Mur1	Alu	chr10B1_Mur175668883	ProperStrand	4	1	-inf
chr9	123462036	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	90080434	90080450	protein_coding	Dennd4b	intron	ENSMUSG00000042404	NonProperStrand	1	1	-inf
chr8	110696159	110696259	SINE	B4	B4	chr8B4110696183	ProperStrand	4	chr8	110696064	110696154	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n110696079	ProperStrand	2	2	-inf
chr11	68367143	68367213	LTR	ORR1D2	MaLR	chr11ORR1D268367118	ProperStrand	3	chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr8	89030610	89030667	protein_coding	Abcc12	intron	ENSMUSG00000036872	ProperStrand	128	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.0857
chr1	134630717	134631248	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr3	96558269	96558327	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	1	-8.8649
chr9	123461793	123461824	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chrX	71325894	71325915	protein_coding	Mecp2	intron	ENSMUSG00000031393	ProperStrand	2	1	-8.0983
chr15	88157987	88158077	LINE	Lx5	L1	chr15Lx588157927	NonProperStrand	1	chr15	88157150	88157250	SINE	B3	B2	chr15B388157071	NonProperStrand	1	1	-inf
chr15	85347659	85347722	SINE	B4A	B4	chr15B4A85347629	NonProperStrand	1	chr15	85347559	85347594	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n85347458	ProperStrand	1	1	-inf
chr4	89787713	89787762	LINE	L1MC1	L1	chr4L1MC189787585	NonProperStrand	1	chr4	89787229	89787311	LINE	Lx4A	L1	chr4Lx4A89787130	NonProperStrand	1	1	-inf
chr1	42893673	42893727	LINE	L1M4c	L1	chr1L1M4c42893603	ProperStrand	2	chr13	51661519	51661583	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	33	1	-20.7426
chr6	47868132	47868217	LTR	RMER2	ERV1	chr6RMER247868044	NonProperStrand	1	chr9	123462014	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	146260994	146261022	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	11212848	11212919	protein_coding	Dpy19l4	intron	ENSMUSG00000045205	ProperStrand	21	1	-7.1436
chr12	8337819	8337896	protein_coding	Hs1bp3	intron	ENSMUSG00000020605	ProperStrand	33	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-10.1064
chr8	78723719	78723819	LTR	RLTR14-int	ERV1	chr8RLTR14-int78723604	ProperStrand	1	chr10	83030118	83030159	protein_coding	A230046K03Rik	intron	ENSMUSG00000034560	ProperStrand	68	1	-inf
chr9	109999826	110026146	SINE	RSINE1	B4	chr9RSINE1110002563	ProperStrand	4	chr9	109999799	109999827	protein_coding	Dhx30	intron	ENSMUSG00000032480	NonProperStrand	23	1	-20.9611
chr16	62296532	62296550	LTR	MTE-int	MaLR	chr16MTE-int62296335	ProperStrand	1	chr5	115021727	115021853	protein_coding	BC057022	intron	ENSMUSG00000041930	ProperStrand	50	1	-inf
chr17	39847184	39847248	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	150434967	150435041	lincRNA	Gm14123	exon	ENSMUSG00000086407	NonProperStrand	1	1	-inf
chr7	80226246	80226286	LINE	L1Md_A	L1	chr7L1Md_A80222876	NonProperStrand	13	chr11	93950032	93951994	protein_coding	Spag9	exon	ENSMUSG00000020859	NonProperStrand	74	2	-inf
chr18	49023573	49023673	LINE	L1_Mus1	L1	chr18L1_Mus149023589	NonProperStrand	1	chr18	49023476	49023566	LINE	L1_Mus2	L1	chr18L1_Mus249022577	NonProperStrand	1	1	-inf
chr6	3201493	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	mmu-miR-6240	2	19	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	1	-4.3779
chr12	78351030	78351107	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	140032902	140033016	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	2	-4.6864
chr5	108171154	108171197	LTR	ORR1E-int	MaLR	chr5ORR1E-int108170723	NonProperStrand	1	chr7	97406975	97407630	protein_coding	Ccdc83	intron	ENSMUSG00000030617	NonProperStrand	12	1	-inf
chr19	30168511	30168601	SINE	B3	B2	chr19B330168453	NonProperStrand	1	chr19	30168854	30168954	SINE	PB1D9	Alu	chr19PB1D930168826	NonProperStrand	1	1	-inf
chr10	23785412	23785466	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr7	130902546	130902593	LTR	MT2A	ERVL	chr7MT2A130902147	NonProperStrand	2	1	-17.4876
chr3	26321227	26321243	LINE	Lx3C	L1	chr3Lx3C26320485	ProperStrand	1	chr17	39847015	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	19841493	19841554	protein_coding-noncoding	Opa3	utr5	ENSMUSG00000052214	ProperStrand	1	chr4	55038228	55038308	protein_coding	Zfp462	intron	ENSMUSG00000060206	ProperStrand	174	1	-inf
chr15	30298461	30298561	protein_coding	Ctnnd2	intron	ENSMUSG00000022240	ProperStrand	32	chr5	115560969	115561153	protein_coding	Acads	exon	ENSMUSG00000029545	NonProperStrand	165	1	-11.2619
chr11	20056097	20056117	LTR	RMER16-int	ERVK	chr11RMER16-int20054833	ProperStrand	1	chr17	39847958	39847974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	13878859	13878907	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	12	chr6	3201472	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-5.9865
chrX	87238359	87238389	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr11	53390436	53390475	protein_coding	Kif3a	intron	ENSMUSG00000018395	ProperStrand	47	1	-9.9739
chr5	110755619	110755673	protein_coding	Pole	intron	ENSMUSG00000007080	NonProperStrand	46	chr9	40209632	40209713	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-8.6115
chr9	37511698	37511781	LINE	Lx4B	L1	chr9Lx4B37511549	NonProperStrand	18	chr4	132410057	132410094	protein_coding	Stx12	utr3	ENSMUSG00000028879	ProperStrand	11	1	-18.0444
chr17	39848672	39848805	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr14	12450758	12450775	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	30	3	-7.4889
chr5	46009686	46009786	protein_coding	Fam184b	intron	ENSMUSG00000015879	NonProperStrand	2	chrX	96254679	96254769	protein_coding	Stard8	intron	ENSMUSG00000031216	NonProperStrand	2	1	-19.8939
chr17	39847037	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	13659053	13659078	protein_coding	Xkr9	intron	ENSMUSG00000067813	NonProperStrand	2	1	-5.3533
chr10	128441885	128441950	LTR	RLTR6-int	ERV1	chr10RLTR6-int128441124	NonProperStrand	1	chr17	39847990	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	167608309	167608381	lincRNA	9230111E07Rik	intron	ENSMUSG00000087624	NonProperStrand	20	chr19	37376584	37376646	protein_coding	Ide	intron	ENSMUSG00000056999	NonProperStrand	32	1	-15.5237
chr17	39848498	39848570	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	36971629	36971712	lincRNA	Gm16631	intron	ENSMUSG00000086388	NonProperStrand	6	1	-6.0469
chr2	120555205	120555251	protein_coding	Cdan1	intron	ENSMUSG00000027284	ProperStrand	17	chr2	120563432	120563523	protein_coding	Ttbk2	utr3	ENSMUSG00000090100	ProperStrand	13	2	-inf
chr17	93130266	93130366	LINE	Lx6	L1	chr17Lx693130232	ProperStrand	1	chr17	93129959	93130049	LTR	MTC	MaLR	chr17MTC93129824	ProperStrand	1	1	-inf
chr2	39087024	39087060	LINE	L1VL4	L1	chr2L1VL439085167	NonProperStrand	3	chr2	39090321	39090347	LTR	RLTR46	ERVK	chr2RLTR4639090073	NonProperStrand	1	1	-inf
chr17	39845361	39845429	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr4	43492922	43492954	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	1	-3.0841
chr9	98601473	98601563	LINE	L1_Mur3	L1	chr9L1_Mur398601440	ProperStrand	1	chr6	131380271	131380371	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	17	1	-inf
chr5	146234623	146234677	LINE	Lx4B	L1	chr5Lx4B146234399	ProperStrand	1	chr11	4962101	4962160	protein_coding-noncoding	Gas2l1	utr3	ENSMUSG00000034201	NonProperStrand	3	1	-inf
chr5	5666921	5666937	protein_coding	Steap2	utr3	ENSMUSG00000015653	ProperStrand	10	chr14	56101057	56101074	protein_coding	Dhrs4	intron	ENSMUSG00000022210	NonProperStrand	8	1	-19.7993
chr5	146260993	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	13416895	13416915	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	13	3	-18.6732
chr10	128355193	128355293	protein_coding	Rdh5	intron	ENSMUSG00000025350	NonProperStrand	16	chr10	128355098	128355188	protein_coding	Bloc1s1	utr3	ENSMUSG00000090247	NonProperStrand	1	1	-inf
chr9	75445733	75445777	protein_coding	Tmod2	intron	ENSMUSG00000032186	NonProperStrand	24	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.7998
chr18	65042359	65042381	LINE	L1_Mus3	L1	chr18L1_Mus365042296	ProperStrand	1	chr18	65071222	65071286	protein_coding	Nedd4l	intron	ENSMUSG00000024589	ProperStrand	160	1	-inf
chr7	127981203	127981412	SINE	B1_Mus1	Alu	chr7B1_Mus1127981208	NonProperStrand	4	chr7	127981490	127981825	SINE	B3A	B2	chr7B3A127981351	NonProperStrand	7	1	-inf
chr10	93834763	93834853	protein_coding	Tmcc3	intron	ENSMUSG00000020023	ProperStrand	52	chr14	21661545	21662215	protein_coding	Plau	utr3	ENSMUSG00000021822	ProperStrand	53	3	-20.0409
chr13	65741874	65741967	LINE	L1_Mur3	L1	chr13L1_Mur365741879	ProperStrand	1	chr17	39847089	39847139	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	99349073	99349443	protein_coding	Krt23	intron	ENSMUSG00000006777	ProperStrand	1	chr9	40802772	40802834	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr18	26010368	26010468	LINE	L1Md_F2	L1	chr18L1Md_F226010371	NonProperStrand	1	chr18	26011162	26011252	LINE	L1_Mus1	L1	chr18L1_Mus126010963	NonProperStrand	1	1	-inf
chr1	167224979	167225079	SINE	B2_Mm2	B2	chr1B2_Mm2167224941	NonProperStrand	2	chr1	167225169	167225259	SINE	RSINE1	B4	chr1RSINE1167225187	ProperStrand	1	1	-inf
chr17	32018257	32018304	LTR	ORR1A2	MaLR	chr17ORR1A232018148	NonProperStrand	1	chr8	91565680	91565760	protein_coding	Sall1	intron	ENSMUSG00000031665	NonProperStrand	129	1	-inf
chr16	30364886	30364976	protein_coding	Atp13a3	intron	ENSMUSG00000022533	ProperStrand	59	chr11	4487302	4487358	protein_coding	Mtmr3	intron	ENSMUSG00000034354	ProperStrand	84	2	-17.8609
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr17	27111203	27111266	protein_coding	Ggnbp1	utr5	ENSMUSG00000048731	ProperStrand	31	1	-9.1762
chrX	76129173	76129208	LINE	L1Md_F2	L1	chrXL1Md_F276129114	ProperStrand	4	chr17	39846942	39846975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr13	103329223	103329313	LINE	L1_Mus3	L1	chr13L1_Mus3103327211	ProperStrand	7	chr18	77154549	77154649	LINE	Lx	L1	chr18Lx77154010	NonProperStrand	7	1	-inf
chr14	18293618	18293718	LTR	MERVL_2A-int	ERVL	chr14MERVL_2A-int18293590	ProperStrand	2	chr14	18293764	18293854	LTR	MERVL_2A-int	ERVL	chr14MERVL_2A-int18293728	NonProperStrand	3	2	-inf
chr11	14519363	14519463	LINE	Lx9	L1	chr11Lx914519226	ProperStrand	1	chr13	100123206	100123296	protein_coding	Mrps27	intron	ENSMUSG00000041632	ProperStrand	10	1	-inf
chr6	124821130	124821373	protein_coding	Cd4	intron	ENSMUSG00000023274	ProperStrand	35	chr1	72226331	72226362	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-12.4346
chr2	44861523	44861613	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	chr3	9494152	9494251	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-7.2032
chr3	130729694	130729794	LTR	RLTR22_Mur	ERVK	chr3RLTR22_Mur130729588	NonProperStrand	1	chr3	130729850	130729940	SINE	B1_Mus1	Alu	chr3B1_Mus1130729865	NonProperStrand	2	1	-inf
chr3	123507935	123508035	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr10	127682553	127682643	protein_coding	Timeless	intron	ENSMUSG00000039994	ProperStrand	14	1	-15.4213
chr2	90395149	90395184	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr12	110695340	110695559	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-6.9093
chr17	46175318	46182697	Simple_repeat	(GAA)n	Simple_repeat	chr17(GAA)n46181449	NonProperStrand	1	chr16	24535230	24535301	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	1	-inf
chr9	58313386	58313414	lincRNA	4930461G14Rik	intron	ENSMUSG00000086516	ProperStrand	3	chr7	130486703	130486784	protein_coding	Arhgap17	intron	ENSMUSG00000030766	ProperStrand	89	1	-17.5723
chr3	125382035	125382054	protein_coding	Ndst4	intron	ENSMUSG00000027971	NonProperStrand	11	chr5	37377626	37377731	protein_coding	Wfs1	intron	ENSMUSG00000039474	NonProperStrand	16	1	-18.3136
chr10	7822577	7822677	LTR	ORR1B1-int	MaLR	chr10ORR1B1-int7822522	ProperStrand	1	chr10	7822764	7822854	LTR	ORR1B1-int	MaLR	chr10ORR1B1-int7822780	ProperStrand	1	1	-inf
chr11	3420570	3420660	protein_coding-noncoding	Smtn	utr3	ENSMUSG00000020439	NonProperStrand	1	chr11	3420944	3421044	protein_coding	Smtn	intron	ENSMUSG00000020439	NonProperStrand	4	1	-inf
chr17	33903979	33904069	SINE	B1_Mus2	Alu	chr17B1_Mus233903969	ProperStrand	1	chr17	33904220	33904320	SINE	B3	B2	chr17B333904186	NonProperStrand	1	1	-inf
chr17	39846580	39846693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	21275988	21276031	protein_coding	Trim27	intron	ENSMUSG00000021326	ProperStrand	1	1	-inf
chr16	35804698	35804730	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	chr4	155558746	155558825	protein_coding	Agrn	intron	ENSMUSG00000041936	NonProperStrand	37	1	-10.6855
chr14	57818913	57819006	LINE	L1MD	L1	chr14L1MD57818876	NonProperStrand	3	chr17	39847651	39847693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr13	34978671	34978782	protein_coding	Prpf4b	intron	ENSMUSG00000021413	NonProperStrand	12	chr2	126584970	126585001	protein_coding	Usp8	utr3	ENSMUSG00000027363	ProperStrand	5	1	-inf
chr17	70963728	70963776	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	100932983	100933059	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	1	-6.3794
mmu-miR-294-3p	0	22	miRNA	mmu-miR-294-3p	.	mmu-miR-294-3p	ProperStrand	6	chr2	5379297	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr3	46067167	46067257	LTR	RMER17A	ERVK	chr3RMER17A46067147	ProperStrand	1	chr3	46066776	46066876	SINE	RSINE1	B4	chr3RSINE146066801	ProperStrand	1	1	-inf
chr1	179119214	179119251	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr6	38805795	38805907	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	1	-8.2371
chr17	71500555	71500621	lincRNA	Gm16724	intron	ENSMUSG00000085916	NonProperStrand	31	chr14	56791114	56791190	protein_coding	Gzmn	intron	ENSMUSG00000015443	ProperStrand	7	4	-21.6861
chr2	164016774	164016831	antisense	A730032A03Rik	.	ENSMUSG00000085649	ProperStrand	13	chr3	86265597	86265644	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-13.4674
chr1	8038733	8038823	LINE	Lx	L1	chr1Lx8037684	ProperStrand	1	chr1	8034918	8035018	LTR	MMERVK10C-int	ERVK	chr1MMERVK10C-int8031145	NonProperStrand	1	1	-inf
chr8	47284830	47284887	LTR	ORR1A2	MaLR	chr8ORR1A247284773	NonProperStrand	1	chr8	47293008	47293046	protein_coding	Slc25a4	intron	ENSMUSG00000031633	ProperStrand	11	1	-inf
chr11	98131297	98131334	protein_coding	Cdk12	intron	ENSMUSG00000003119	NonProperStrand	35	chr1	54176739	54176777	protein_coding	Hecw2	intron	ENSMUSG00000042807	ProperStrand	14	1	-16.0721
chr16	23111634	23111685	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr1	71385354	71385384	protein_coding	Abca12	intron	ENSMUSG00000050296	ProperStrand	9	1	-13.8013
chr12	84962730	84962749	SINE	B3	B2	chr12B384962692	ProperStrand	1	chr12	84960003	84960116	SINE	ID_B1	B4	chr12ID_B184960000	ProperStrand	5	1	-inf
chr13	9388139	9388233	lincRNA	Gm17294	exon	ENSMUSG00000091506	ProperStrand	14	chr9	65685391	65685449	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	1	-14.3090
chr10	83384839	83384947	LTR	MTE2a	MaLR	chr10MTE2a83384750	ProperStrand	4	chr10	83384566	83384756	LTR	RLTR17	ERVK	chr10RLTR1783384284	NonProperStrand	11	2	-inf
chr11	6418124	6418268	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	chr19	7106975	7107037	protein_coding	Stip1	exon	ENSMUSG00000024966	NonProperStrand	53	1	-11.4351
chr16	14002345	14002386	protein_coding	2900011O08Rik	intron	ENSMUSG00000044117	ProperStrand	41	chr17	87020970	87021044	protein_coding	Prkce	intron	ENSMUSG00000045038	NonProperStrand	64	1	-12.6616
chr6	36123537	36123627	LINE	L1Md_T	L1	chr6L1Md_T36122429	NonProperStrand	1	chr6	36123739	36123839	LINE	L1_Mm	L1	chr6L1_Mm36123639	ProperStrand	1	1	-inf
chr2	179587674	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr15	25850713	25850772	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	163	1	-8.5958
chrX	13626223	13677600	LINE	Lx	L1	chrXLx13624849	ProperStrand	7	chrX	13620709	13620810	LTR	MTD	MaLR	chrXMTD13620446	ProperStrand	6	6	-inf
chr19	7473789	7473847	SINE	RSINE1	B4	chr19RSINE17473772	ProperStrand	2	chrX	6106962	6107012	protein_coding	Shroom4	intron	ENSMUSG00000068270	ProperStrand	12	1	-inf
chrX	41809975	41810006	LINE	Lx9	L1	chrXLx941809036	ProperStrand	1	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	33823209	33824304	protein_coding	Hnrnpm	utr5	ENSMUSG00000059208	ProperStrand	59	chr17	33823300	33824483	protein_coding	March2	utr3	ENSMUSG00000079557	ProperStrand	31	14	-inf
chr5	146261021	146261078	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	77071035	77071342	protein_coding	Sumo3	intron	ENSMUSG00000020265	NonProperStrand	91	1	-4.2640
chr8	84957916	84958022	LINE	Lx5	L1	chr8Lx584957887	NonProperStrand	1	chr17	39847183	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	134562123	134562213	LINE	L1MC	L1	chr5L1MC134562045	NonProperStrand	1	chr5	134561764	134561864	LTR	MT2A	ERVL	chr5MT2A134561708	ProperStrand	1	1	-inf
chr15	66963194	66963294	LINE	HAL1-2a_MD	L1	chr15HAL1-2a_MD66963132	NonProperStrand	1	chr15	66963514	66963604	LTR	MLT1B	MaLR	chr15MLT1B66963497	NonProperStrand	1	1	-inf
chr1	119527700	119527760	LINE	L1Md_F3	L1	chr1L1Md_F3119527036	NonProperStrand	3	chr17	39847762	39847779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr8	18731517	18731544	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr13	34127403	34127440	pseudogene	Gm17084	.	ENSMUSG00000091462	NonProperStrand	23	1	-8.8363
chr18	32860625	32860722	lincRNA	4930455D15Rik	intron	ENSMUSG00000085056	NonProperStrand	24	chr6	116165170	116165193	protein_coding	D6Wsu116e	intron	ENSMUSG00000024104	NonProperStrand	27	1	-15.5023
chr4	40745544	40748556	LTR	MLT1F	MaLR	chr4MLT1F40745521	NonProperStrand	2	chr4	40743126	40744109	LTR	ORR1A4-int	MaLR	chr4ORR1A4-int40743770	NonProperStrand	2	1	-19.8939
chr2	20631093	20631183	antisense	Gm13362	.	ENSMUSG00000086418	ProperStrand	1	chr2	20630749	20630849	protein_coding	Etl4	intron	ENSMUSG00000036617	NonProperStrand	26	1	-inf
chr3	116507430	116507530	protein_coding	Agl	intron	ENSMUSG00000033400	ProperStrand	7	chr14	11691640	11691730	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-12.2915
chr1	132714702	132714802	antisense	Gm15848	.	ENSMUSG00000086706	ProperStrand	15	chr1	132729205	132729296	protein_coding	Pigr	intron	ENSMUSG00000026417	NonProperStrand	52	1	-15.1378
chr17	39847903	39848025	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	147808716	147808737	protein_coding	Ubiad1	utr3	ENSMUSG00000047719	ProperStrand	4	1	-3.7035
chr4	95810627	95810727	LINE	Lx4A	L1	chr4Lx4A95810061	NonProperStrand	1	chr4	95810774	95810864	LINE	Lx5	L1	chr4Lx595810713	ProperStrand	2	1	-inf
chr5	148315308	148315325	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	chr8	122900498	122900564	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.6722
chr17	39846918	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	110797633	110797692	protein_coding	Als2cl	intron	ENSMUSG00000044037	ProperStrand	1	1	-inf
chr4	3591268	3593462	LINE	Lx8	L1	chr4Lx83591073	ProperStrand	2	chr4	3616036	3616092	protein_coding	Lyn	intron	ENSMUSG00000042228	ProperStrand	23	2	-inf
chr12	88125482	88125582	DNA	MER20	MER1_type	chr12MER2088125467	ProperStrand	1	chr12	88125035	88125125	SINE	ID_B1	B4	chr12ID_B188125057	NonProperStrand	1	1	-inf
chr7	118131659	118131759	SINE	B4A	B4	chr7B4A118131600	NonProperStrand	1	chr7	118131419	118131509	Simple_repeat	(TTTC)n	Simple_repeat	chr7(TTTC)n118131435	ProperStrand	1	1	-inf
chr17	20834578	20834668	LINE	Lx5	L1	chr17Lx520833780	NonProperStrand	1	chr17	20834881	20834981	LINE	Lx5	L1	chr17Lx520834588	NonProperStrand	1	1	-inf
chr5	121572164	121572701	Other	RMER1C	Other	chr5RMER1C121572305	NonProperStrand	8	chr2	59651575	59651678	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	1	-14.4326
chr9	123461822	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr8	41395788	41395807	protein_coding	Efha2	intron	ENSMUSG00000039478	NonProperStrand	7	1	-5.1121
chr4	77083886	77083904	protein_coding	Ptprd	intron	ENSMUSG00000028399	NonProperStrand	48	chr6	94217941	94218084	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-6.7270
chr11	102309423	102309656	SINE	PB1D7	Alu	chr11PB1D7102309403	ProperStrand	2	chr11	102308304	102308703	protein_coding	Fam171a2	intron	ENSMUSG00000034685	ProperStrand	37	1	-21.5930
chr19	55420560	55420646	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	chr15	53333956	53334022	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-5.3605
chr11	109011800	109011861	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	101705374	101705436	LINE	L1MEf	L1	chrXL1MEf101705287	NonProperStrand	6	1	-10.8292
chrX	144338707	144338809	LINE	Lx5	L1	chrXLx5144338624	ProperStrand	2	chr17	39846413	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr14	64594340	64594430	protein_coding	4930578I06Rik	intron	ENSMUSG00000021961	NonProperStrand	10	chr11	101604937	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-16.1341
chr11	110509668	110509758	LINE	Lx2B	L1	chr11Lx2B110509629	ProperStrand	1	chr11	110509362	110509462	LINE	Lx5	L1	chr11Lx5110509292	ProperStrand	1	1	-inf
chr2	160948416	160948511	LTR	MTD	MaLR	chr2MTD160948435	NonProperStrand	1	chr9	123462102	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	20678261	20678638	LINE	L1_Mm	L1	chrXL1_Mm20678267	NonProperStrand	10	chr11	4704275	4704337	protein_coding	Nf2	intron	ENSMUSG00000009073	ProperStrand	20	2	-inf
chr10	81142471	81142523	LINE	L2a	L2	chr10L2a81142475	ProperStrand	8	chr17	39848400	39848481	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.1688
chr8	22174801	22174867	LINE	L1Md_F2	L1	chr8L1Md_F222171608	ProperStrand	2	chr8	22174999	22175075	LINE	L1Md_T	L1	chr8L1Md_T22174899	ProperStrand	1	1	-inf
chr13	93158129	93158153	protein_coding	Dhfr	utr3	ENSMUSG00000021707	NonProperStrand	6	chr2	73012734	73012768	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	1	-16.3381
chr4	152385577	152385805	LTR	MTD	MaLR	chr4MTD152385676	NonProperStrand	8	chr4	152385464	152385554	LTR	MTEa	MaLR	chr4MTEa152385286	NonProperStrand	8	8	-inf
chr17	39846095	39846185	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr13	24475467	24475567	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	1	-3.8494
chr18	82609787	82609830	LINE	L1_Mur3	L1	chr18L1_Mur382609732	NonProperStrand	1	chr18	82611890	82611962	LINE	L1_Mur3	L1	chr18L1_Mur382610826	NonProperStrand	1	1	-inf
chr3	158279006	158279106	LINE	Lx8	L1	chr3Lx8158278828	ProperStrand	1	chr3	158279150	158279240	SINE	B3	B2	chr3B3158279111	ProperStrand	1	1	-inf
chr14	121501787	121501818	protein_coding	Farp1	intron	ENSMUSG00000025555	NonProperStrand	67	chr13	44869594	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.2822
chr6	58652548	58652661	LINE	L1Md_F2	L1	chr6L1Md_F258651443	NonProperStrand	1	chr17	39847668	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	56573016	56573061	SINE	B3A	B2	chr19B3A56572909	ProperStrand	1	chr19	56549087	56549157	protein_coding	9930023K05Rik	intron	ENSMUSG00000035818	ProperStrand	19	1	-inf
chr6	136560424	136560514	LTR	RMER13A	ERVK	chr6RMER13A136560347	ProperStrand	1	chr6	136560570	136560670	protein_coding	Plbd1	utr3	ENSMUSG00000030214	NonProperStrand	39	1	-inf
chr16	17902268	17902319	protein_coding	Dgcr14	exon	ENSMUSG00000003527	ProperStrand	12	chr9	59671723	59672010	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-9.5442
chr15	97676983	97677061	LTR	RMER15	ERVL	chr15RMER1597676548	NonProperStrand	1	chr15	59556412	59556433	SINE	MIRc	MIR	chr15MIRc59556402	NonProperStrand	1	1	-inf
chr14	26505623	26505735	LTR	MTE2b	MaLR	chr14MTE2b26505626	NonProperStrand	1	chr6	3200766	3200798	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr9	36732991	36733018	protein_coding	Pknox2	intron	ENSMUSG00000035934	ProperStrand	37	chr7	123128337	123128400	protein_coding	Sox6	intron	ENSMUSG00000051910	NonProperStrand	155	1	-11.0930
chr12	98178672	98178772	LINE	L1_Mur2	L1	chr12L1_Mur298178632	NonProperStrand	1	chr12	98178390	98178480	LTR	IAPLTR2a	ERVK	chr12IAPLTR2a98178245	ProperStrand	1	1	-inf
chr6	96695956	96696046	DNA	MER20	MER1_type	chr6MER2096695932	ProperStrand	1	chr6	96695779	96695879	LTR	MLT1D	MaLR	chr6MLT1D96695424	NonProperStrand	1	1	-inf
chr13	95829862	95829900	protein_coding	Pde8b	intron	ENSMUSG00000021684	ProperStrand	31	chr16	22122734	22122799	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-11.2667
chr12	59040371	59040409	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr18	34947757	34947848	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-9.3305
chr7	47188443	47188588	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	chr7	47188329	47188454	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	6	-inf
chr12	3911850	3911921	protein_coding	Dnmt3a	utr3	ENSMUSG00000020661	ProperStrand	101	chr2	164852525	164852670	protein_coding	Ncoa5	intron	ENSMUSG00000039804	ProperStrand	61	1	-10.9425
chr1	89490750	89490799	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	chr7	19696705	19696759	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-8.0391
chr17	26962066	26962156	LTR	ETnERV2-int	ERVK	chr17ETnERV2-int26961842	NonProperStrand	1	chr17	26962217	26962317	LTR	ETnERV2-int	ERVK	chr17ETnERV2-int26962238	NonProperStrand	1	1	-inf
chr11	74638866	74638882	protein_coding	Mettl16	utr3	ENSMUSG00000010554	NonProperStrand	3	chr13	97190579	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr7	91446125	91446215	protein_coding	Arnt2	intron	ENSMUSG00000015709	NonProperStrand	7	chr7	91770990	91771090	protein_coding	Zfand6	intron	ENSMUSG00000030629	ProperStrand	2	1	-21.4874
chr12	55686046	55686146	LTR	MTC-int	MaLR	chr12MTC-int55685507	ProperStrand	1	chr12	55686406	55686496	LTR	MTC	MaLR	chr12MTC55686204	ProperStrand	1	1	-inf
chr8	57958349	57958366	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr11	69073518	69073566	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	1	-13.2999
chr6	28562726	28562779	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr16	32651779	32651822	protein_coding	Tnk2	intron	ENSMUSG00000022791	ProperStrand	153	1	-4.7073
chr3	140092503	140092523	LINE	Lx	L1	chr3Lx140092070	NonProperStrand	1	chr16	11145087	11145224	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	23	1	-inf
chr10	127065999	127066196	LINE	L1M4	L1	chr10L1M4127066127	ProperStrand	4	chr10	127065220	127065998	SINE	B1_Mm	Alu	chr10B1_Mm127065911	ProperStrand	5	3	-inf
chr17	39846969	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	142129478	142129571	LTR	MTD	MaLR	chr4MTD142129502	ProperStrand	3	1	-4.3017
chr17	39845479	39845544	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	mmu-miR-6238	2	22	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	1	-4.0524
chr11	120809559	120809848	LTR	BGLII_A	ERVK	chr11BGLII_A120809156	NonProperStrand	13	chr11	120809849	120809939	protein_coding	Slc16a3	utr5	ENSMUSG00000025161	NonProperStrand	149	2	-20.3697
chr9	123461930	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	59516894	59538446	protein_coding	Rod1	intron	ENSMUSG00000028382	ProperStrand	21	2	-5.1898
chr3	144534099	144534214	LINE	L1Md_T	L1	chr3L1Md_T144531543	ProperStrand	11	chr16	19883802	19883924	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-12.3639
chr4	143177368	143177448	LINE	L1Md_T	L1	chr4L1Md_T143174883	NonProperStrand	6	chr15	81383027	81388341	SINE	B1_Mus1	Alu	chr15B1_Mus181383010	ProperStrand	1	1	-inf
chr14	92992164	92992254	LINE	Lx9	L1	chr14Lx992991677	NonProperStrand	1	chr14	92992281	92992381	LINE	Lx9	L1	chr14Lx992992279	NonProperStrand	1	1	-inf
chr17	39843503	39843559	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	138261389	138261475	protein_coding	Zcwpw1	intron	ENSMUSG00000037108	ProperStrand	2	1	-9.7547
chrX	31749469	31749559	LINE	L1_Mur3	L1	chrXL1_Mur331749433	ProperStrand	1	chrX	31749844	31749944	LTR	MTE2a	MaLR	chrXMTE2a31749756	ProperStrand	1	1	-inf
chr12	56532755	56532846	SINE	B3	B2	chr12B356532718	NonProperStrand	2	chr10	12454981	12455081	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	2	-inf
chr3	69022019	69022075	LTR	RMER6C	ERVK	chr3RMER6C69021933	ProperStrand	1	chr9	123462017	123462056	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	44385616	44387042	LTR	ORR1E	MaLR	chr9ORR1E44385616	ProperStrand	3	chr9	44385268	44385619	SINE	B2_Mm1t	B2	chr9B2_Mm1t44385423	NonProperStrand	3	3	-inf
chr17	39846453	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	56101057	56101073	protein_coding	Dhrs4	intron	ENSMUSG00000022210	NonProperStrand	8	2	-4.2675
chr4	133396123	133396213	SINE	B1F2	Alu	chr4B1F2133396137	NonProperStrand	8	chr4	133396238	133396338	SINE	PB1D10	Alu	chr4PB1D10133396250	NonProperStrand	8	8	-inf
chr17	39846744	39846775	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	143291500	143291521	Low_complexity	GA-rich	Low_complexity	chr7GA-rich143291479	NonProperStrand	1	1	-inf
chr12	106634836	106634926	DNA	URR1A	MER1_type	chr12URR1A106634785	ProperStrand	1	chr12	106635286	106635386	Simple_repeat	(CATATA)n	Simple_repeat	chr12(CATATA)n106635285	ProperStrand	1	1	-inf
chr12	59040455	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr8	27263037	27263094	SINE	ID_B1	B4	chr8ID_B127262998	NonProperStrand	1	1	-inf
chr1	9940615	9940705	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr2	54324873	54324973	protein_coding	Galnt13	intron	ENSMUSG00000060988	ProperStrand	12	1	-18.1131
chr12	20200050	20200095	SINE	B1_Mur3	Alu	chr12B1_Mur320200057	NonProperStrand	1	chr1	60189063	60189151	protein_coding	Carf	intron	ENSMUSG00000026017	ProperStrand	8	1	-inf
chr17	15498168	15498286	LINE	Lx9	L1	chr17Lx915498155	ProperStrand	5	chr17	39846415	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr9	123461801	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	116777631	116777729	protein_coding	Ptch2	intron	ENSMUSG00000028681	ProperStrand	15	1	-3.5950
chr1	88272561	88272600	LTR	ORR1C2	MaLR	chr1ORR1C288272479	ProperStrand	1	chr8	19793408	19793492	lincRNA	Gm10060	exon	ENSMUSG00000091171	ProperStrand	3	1	-inf
chr17	39846718	39846748	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	44773750	44778605	protein_coding	Cd3g	intron	ENSMUSG00000002033	NonProperStrand	4	1	-3.6552
chr10	43489974	43490074	LTR	IAPEz-int	ERVK	chr10IAPEz-int43489835	NonProperStrand	2	chr10	43489767	43489857	LTR	IAPLTR1_Mm	ERVK	chr10IAPLTR1_Mm43489478	NonProperStrand	2	2	-inf
chr12	8078646	8078713	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n8078647	NonProperStrand	1	chr9	123462081	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	151916020	151916088	LINE	Lx3C	L1	chr1Lx3C151915247	NonProperStrand	1	chr17	39846718	39846760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	71394954	71395009	Other	RMER1B	Other	chr2RMER1B71394712	NonProperStrand	2	chr9	118674952	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr8	104360687	104360754	LINE	Lx6	L1	chr8Lx6104359955	NonProperStrand	6	chr8	104359419	104359496	LTR	ORR1A2-int	MaLR	chr8ORR1A2-int104357821	NonProperStrand	3	2	-inf
chr17	39847608	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	88266383	88266460	Low_complexity	GA-rich	Low_complexity	chr3GA-rich88266321	NonProperStrand	1	1	-inf
chr17	47255710	47255800	SINE	B1_Mur4	Alu	chr17B1_Mur447255631	ProperStrand	1	chr17	47255864	47255964	SINE	B1_Mus2	Alu	chr17B1_Mus247255796	ProperStrand	1	1	-inf
chr9	123462126	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	53503445	53503527	protein_coding	Sel1l3	intron	ENSMUSG00000029189	ProperStrand	9	3	-11.4310
chr11	19939541	19939641	LINE	L2a	L2	chr11L2a19939477	ProperStrand	4	chr11	19939367	19939457	SINE	B3	B2	chr11B319939267	NonProperStrand	4	3	-inf
chr10	91158805	91158835	LINE	L1M3	L1	chr10L1M391158542	NonProperStrand	1	chr17	39847438	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	21684548	21684659	LTR	IAPEz-int	ERVK	chr9IAPEz-int21683968	ProperStrand	12	chr9	21683812	21683844	LTR	IAPLTR1a_Mm	ERVK	chr9IAPLTR1a_Mm21683630	ProperStrand	1	1	-inf
chr7	28280101	28280201	SINE	ID_B1	B4	chr7ID_B128280126	ProperStrand	1	chr7	28279835	28279925	Satellite	ZP3AR	Satellite	chr7ZP3AR28279769	ProperStrand	1	1	-inf
chr17	39848534	39848596	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chrX	74288500	74288664	LTR	MTA_Mm	MaLR	chrXMTA_Mm74288432	ProperStrand	2	1	-8.7208
chr4	14812556	14818182	protein_coding	Tmem55a	intron	ENSMUSG00000028221	NonProperStrand	17	chr6	43441307	43441371	protein_coding	Tpk1	intron	ENSMUSG00000029735	ProperStrand	82	1	-13.9589
chr13	119707968	119708034	LINE	L1Md_F2	L1	chr13L1Md_F2119706478	NonProperStrand	24	chr13	119704512	119705071	LINE	Lx4B	L1	chr13Lx4B119704372	NonProperStrand	1	1	-inf
chr2	166854887	166854977	protein_coding	Ddx27	intron	ENSMUSG00000017999	ProperStrand	17	chr1	89808448	89808548	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	2	-18.9406
chr3	144559358	144559426	LINE	L1_Mus1	L1	chr3L1_Mus1144559282	NonProperStrand	4	chr3	144559245	144559293	LTR	RLTR10B2	ERVK	chr3RLTR10B2144558878	ProperStrand	1	1	-inf
chr17	39846818	39846852	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	102685590	102685699	SINE	B2_Mm2	B2	chr11B2_Mm2102685574	NonProperStrand	2	2	-inf
chr11	101442457	101442546	protein_coding	Nbr1	utr3	ENSMUSG00000017119	ProperStrand	27	chr19	7537846	7537884	protein_coding	Rtn3	intron	ENSMUSG00000024758	NonProperStrand	24	1	-15.4971
chr1	122357166	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	mmu-miR-6238	2	22	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	1	-10.9382
chr2	79329241	79329286	LTR	MTA_Mm-int	MaLR	chr2MTA_Mm-int79328396	NonProperStrand	1	chr1	159336325	159336427	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	57	1	-inf
chr1	50624127	50624217	LINE	L1_Mus3	L1	chr1L1_Mus350623279	NonProperStrand	1	chr1	50624373	50624473	LINE	L1_Mus3	L1	chr1L1_Mus350623279	ProperStrand	1	1	-inf
chr2	168601392	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	chr12	109549334	109549382	protein_coding	Hhipl1	intron	ENSMUSG00000021260	ProperStrand	179	1	-11.6842
chr12	110692679	110692695	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	chr15	27602125	27602151	protein_coding	Fam105a	intron	ENSMUSG00000056069	ProperStrand	22	1	-11.2255
chr8	22795643	22795669	LINE	L1_Mus2	L1	chr8L1_Mus222794963	ProperStrand	2	chr4	149120029	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-14.0145
chr17	39846669	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	80306480	80306521	LTR	MT2A	ERVL	chr7MT2A80306418	ProperStrand	1	1	-inf
chr14	53857070	53857170	LINE	L1_Mur3	L1	chr14L1_Mur353856964	NonProperStrand	1	chr14	53856780	53856870	LINE	Lx7	L1	chr14Lx753856514	NonProperStrand	1	1	-inf
chr17	39847611	39847669	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	127251413	127251487	protein_coding	Gpat2	intron	ENSMUSG00000046338	ProperStrand	9	2	-3.9821
chr17	31503629	31503645	LTR	RLTR16	ERVK	chr17RLTR1631503313	ProperStrand	1	chr13	97190548	97190574	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr2	128823836	128823933	protein_coding	Zc3h6	intron	ENSMUSG00000042851	ProperStrand	27	1	-15.8738
chr17	41572245	41572335	LINE	L1Md_F2	L1	chr17L1Md_F241571953	NonProperStrand	1	chr17	41572589	41572689	LINE	L1Md_F2	L1	chr17L1Md_F241572441	ProperStrand	1	1	-inf
chr12	102695885	102695945	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-7.4287
chr19	4794772	4794805	protein_coding	Rbm14	intron	ENSMUSG00000006456	ProperStrand	194	chr5	76681989	76682089	protein_coding	Clock	intron	ENSMUSG00000029238	NonProperStrand	16	1	-12.3550
chr18	23555348	23555438	DNA	Tigger5	MER2_type	chr18Tigger523555301	ProperStrand	1	chr17	39846588	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	18388282	18388372	DNA	MER5A1	MER1_type	chr14MER5A118388258	NonProperStrand	1	chr9	64391623	64391723	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-inf
chr17	17010298	17010388	LTR	IAPEY3-int	ERVK	chr17IAPEY3-int17010014	ProperStrand	1	chr3	145865702	145865802	SINE	B4A	B4	chr3B4A145865698	ProperStrand	1	1	-inf
chr12	48968454	48968554	LINE	L1_Mur3	L1	chr12L1_Mur348968147	NonProperStrand	1	chr12	48968695	48968785	LINE	Lx2	L1	chr12Lx248968623	NonProperStrand	1	1	-inf
chr5	146261301	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	46038023	46038118	protein_coding	Apoa1	exon	ENSMUSG00000032083	ProperStrand	3	1	-14.2394
chr17	39846580	39846666	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	24936463	24936499	LTR	MTA_Mm	MaLR	chr17MTA_Mm24936164	ProperStrand	1	1	-inf
chr15	85438146	85462284	LTR	MTD	MaLR	chr15MTD85438004	ProperStrand	1	chr11	65020000	65020099	protein_coding	Myocd	intron	ENSMUSG00000020542	ProperStrand	122	1	-inf
chr5	115650334	115650371	SINE	B1F	Alu	chr5B1F115650297	NonProperStrand	1	chr5	115650370	115650455	SINE	B4A	B4	chr5B4A115650377	NonProperStrand	1	1	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	56655724	56655818	protein_coding	Nhlrc2	intron	ENSMUSG00000025078	NonProperStrand	2	1	-5.4040
chr3	58702448	58702496	LINE	L1M3	L1	chr3L1M358702238	NonProperStrand	1	chr3	32564257	32564295	SINE	B1_Mur3	Alu	chr3B1_Mur332564242	ProperStrand	1	1	-inf
chr5	121143286	121143305	protein_coding	Dtx1	intron	ENSMUSG00000029603	NonProperStrand	3	chr6	65803917	65804033	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-15.9198
chr19	5797080	5797148	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr15	7135736	7135814	protein_coding	Lifr	intron	ENSMUSG00000054263	ProperStrand	64	1	-4.3162
chr17	39846744	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	74452187	74452203	SINE	B4	B4	chrXB474452006	ProperStrand	1	1	-inf
chr5	108110895	108110967	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr1	127771704	127771759	protein_coding	Lypd1	intron	ENSMUSG00000026344	ProperStrand	6	1	-17.4085
chr11	109011647	109011693	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	4768988	4769019	SINE	B1F	Alu	chr11B1F4768909	NonProperStrand	9	1	-9.9559
chr9	122853450	122853499	SINE	B1F	Alu	chr9B1F122853454	ProperStrand	1	chr9	122856770	122857107	protein_coding	1110059G10Rik	utr3	ENSMUSG00000032551	ProperStrand	14	1	-inf
chr1	34119534	34119594	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr7	98093081	98093167	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-4.4232
chr1	156195505	156195595	LTR	MTC-int	MaLR	chr1MTC-int156194406	ProperStrand	1	chr1	156195834	156195934	LTR	MTC	MaLR	chr1MTC156195621	ProperStrand	1	1	-inf
chr5	146261022	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	91931137	91931244	lincRNA	Gm13780	intron	ENSMUSG00000087197	ProperStrand	19	1	-7.3464
chr16	38558706	38564154	LTR	RLTR25B	ERVK	chr16RLTR25B38558348	ProperStrand	1	chr7	28178311	28178945	protein_coding	Spnb4	intron	ENSMUSG00000011751	NonProperStrand	106	1	-inf
chr11	109011794	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	3426075	3426141	protein_coding	Cwf19l2	intron	ENSMUSG00000025898	ProperStrand	36	1	-7.1143
chr9	99552932	99552956	protein_coding	Dzip1l	intron	ENSMUSG00000037784	NonProperStrand	6	chr13	97190597	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr17	39847863	39847938	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	129267697	129267759	Low_complexity	GA-rich	Low_complexity	chr2GA-rich129267645	NonProperStrand	1	1	-inf
chr17	39846664	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	165491077	165491095	antisense	Gm15261	.	ENSMUSG00000087201	ProperStrand	3	2	-8.0300
chr17	39843709	39843824	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	80443058	80443076	pseudogene	Gm13688	.	ENSMUSG00000083284	ProperStrand	1	1	-inf
chr10	89818164	89818213	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	chr4	119136596	119136672	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-6.1710
chr4	21868007	21868088	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	ProperStrand	29	chr8	25846091	25846154	protein_coding	Adam5	intron	ENSMUSG00000031554	ProperStrand	56	1	-13.6328
chr9	123462079	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	65841019	65841058	protein_coding	1110003E01Rik	utr3	ENSMUSG00000037822	NonProperStrand	5	1	-5.8308
chr5	132460849	132460939	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr3	79509168	79509268	protein_coding	Rxfp1	intron	ENSMUSG00000034009	ProperStrand	199	1	-4.8581
chr4	47136896	47136986	SINE	B4A	B4	chr4B4A47136820	ProperStrand	1	chr4	47136386	47136486	SINE	ID_B1	B4	chr4ID_B147136300	NonProperStrand	1	1	-inf
chr16	22428659	22428741	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr19	8969860	8969889	protein_coding	Ints5	exon	ENSMUSG00000071652	ProperStrand	72	1	-8.7193
chr9	22463125	22463186	protein_coding-noncoding	Bbs9	utr5	ENSMUSG00000035919	NonProperStrand	1	chr9	22465101	22465173	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	1	-inf
chr8	96078300	96078400	LINE	Lx8	L1	chr8Lx896078101	ProperStrand	1	chr8	96078616	96078706	LTR	RMER19C	ERVK	chr8RMER19C96078521	ProperStrand	1	1	-inf
chr8	3531406	3531452	protein_coding	Pnpla6	intron	ENSMUSG00000004565	ProperStrand	27	chr13	109429110	109429166	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	2	-15.1943
chr5	146260994	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	109138679	109138757	protein_coding	Cdh1	intron	ENSMUSG00000000303	ProperStrand	54	1	-5.2675
chr15	6024774	6024864	LINE	L1Md_F2	L1	chr15L1Md_F26024286	NonProperStrand	1	chr15	6024934	6025034	LINE	L1Md_F2	L1	chr15L1Md_F26024851	ProperStrand	1	1	-inf
chr17	39847551	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	195016148	195016258	antisense	Gm15872	.	ENSMUSG00000090080	ProperStrand	3	1	-4.3512
chr5	62772018	62772118	LINE	Lx3B	L1	chr5Lx3B62771844	NonProperStrand	1	chr5	62772457	62772547	LINE	Lx8	L1	chr5Lx862772165	ProperStrand	1	1	-inf
chr7	130747256	130747303	LINE	L1Md_A	L1	chr7L1Md_A130747231	NonProperStrand	7	chr7	130747147	130747204	LINE	Lx7	L1	chr7Lx7130746983	ProperStrand	1	1	-inf
chr13	104210171	104210261	LTR	MLT1D	MaLR	chr13MLT1D104210156	NonProperStrand	1	chr1	153458055	153458155	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	1	-inf
chr17	70963669	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	9	-13.2667
chr19	37336248	37336276	SINE	B1_Mur4	Alu	chr19B1_Mur437336160	ProperStrand	1	chr19	37336609	37336647	SINE	B2_Mm2	B2	chr19B2_Mm237336499	ProperStrand	4	1	-inf
chr6	49244914	49245533	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int49244905	ProperStrand	13	chr6	49249037	49249056	LTR	ORR1A2	MaLR	chr6ORR1A249248991	ProperStrand	2	1	-inf
chr11	69738964	69739064	LINE	Lx9	L1	chr11Lx969738965	NonProperStrand	2	chr11	69739067	69739157	SINE	PB1D9	Alu	chr11PB1D969739077	NonProperStrand	2	2	-inf
chr8	84995771	84995861	LINE	L1Md_F2	L1	chr8L1Md_F284995114	ProperStrand	16	chr8	84995911	84997028	SINE	ID4	ID	chr8ID484996956	ProperStrand	2	2	-inf
chr9	45505060	45505138	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	chr7	133088623	133088691	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.1894
chr2	117667515	117667605	lincRNA	4930412B13Rik	intron	ENSMUSG00000086221	NonProperStrand	2	chr2	117143258	117143358	protein_coding	Rasgrp1	intron	ENSMUSG00000027347	ProperStrand	4	1	-22.1285
chr7	80033160	80033275	LINE	L1ME3A	L1	chr7L1ME3A80033139	ProperStrand	2	chr7	80039764	80039787	LINE	L1_Mus3	L1	chr7L1_Mus380039108	ProperStrand	6	1	-inf
chr7	122413177	122413277	LINE	L1_Mus2	L1	chr7L1_Mus2122412909	ProperStrand	1	chr7	122413652	122413676	SINE	B4	B4	chr7B4122413606	ProperStrand	1	1	-inf
chr17	39847767	39847846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	28260231	28260291	protein_coding	D14Abb1e	intron	ENSMUSG00000040651	ProperStrand	5	1	-3.2379
chr17	39848200	39848331	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	1	-3.1127
chr14	122210111	122210145	LTR	RMER2	ERV1	chr14RMER2122209953	NonProperStrand	1	chr3	88286356	88286441	protein_coding	Lmna	exon	ENSMUSG00000028063	ProperStrand	5	1	-inf
chr7	109955013	109955078	LINE	Lx8	L1	chr7Lx8109954760	ProperStrand	1	chr11	52272632	52272692	Low_complexity	polypyrimidine	Low_complexity	chr11polypyrimidine52272637	NonProperStrand	1	1	-inf
chr17	39845997	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chrX	116287160	116287207	LTR	IAPLTR2_Mm	ERVK	chrXIAPLTR2_Mm116286882	ProperStrand	3	1	-7.9693
chr13	54190147	54190183	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	chr13	97190545	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	3	-12.7802
chr11	105922645	105922662	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	chr9	15316536	15316628	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-15.6351
chr11	101604958	101605032	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	chr11	70978481	70978703	protein_coding	Nlrp1b	intron	ENSMUSG00000070390	ProperStrand	51	1	-12.8011
chr19	20363137	20363237	LTR	MTA_Mm-int	MaLR	chr19MTA_Mm-int20363136	ProperStrand	1	chr19	20362857	20362947	LTR	MTA_Mm	MaLR	chr19MTA_Mm20362741	ProperStrand	1	1	-inf
chr17	39843589	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	69027168	69027237	protein_coding	Nostrin	utr3	ENSMUSG00000034738	ProperStrand	25	1	-4.1672
chr8	54948565	54948665	LTR	RLTR20A	ERVK	chr8RLTR20A54948540	ProperStrand	1	chr8	54948947	54949037	LTR	RMER13B	ERVK	chr8RMER13B54948662	ProperStrand	1	1	-inf
chr12	60382280	60382370	LINE	L1VL2	L1	chr12L1VL260380982	NonProperStrand	1	chr12	58841161	58841261	LINE	Lx4A	L1	chr12Lx4A58839614	ProperStrand	1	1	-inf
chr2	153373356	153373396	LINE	L2b	L2	chr2L2b153373247	ProperStrand	2	chr2	167035069	167035189	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	1	-20.6040
chr14	83004005	83004105	LINE	L1_Mur1	L1	chr14L1_Mur183004012	ProperStrand	1	chr14	83003684	83003774	LINE	L1_Mus1	L1	chr14L1_Mus183003231	ProperStrand	1	1	-inf
chrX	74271023	74271824	SINE	B4A	B4	chrXB4A74271543	ProperStrand	14	chr14	79751264	79751283	protein_coding	Naa16	exon	ENSMUSG00000022020	ProperStrand	11	1	-18.4017
chr8	95864390	95864433	LINE	L1_Mur2	L1	chr8L1_Mur295864400	ProperStrand	5	chr8	95865034	95865087	LINE	Lx5	L1	chr8Lx595864721	NonProperStrand	11	1	-21.8628
chr11	50299133	50299186	LINE	L1M1	L1	chr11L1M150299107	NonProperStrand	2	chr11	50298199	50299134	SINE	B1_Mus2	Alu	chr11B1_Mus250298190	NonProperStrand	1	1	-inf
chr3	90507589	90509260	LINE	L1_Rod	L1	chr3L1_Rod90507354	ProperStrand	7	chr2	5379306	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.8922
chr11	72442623	72442810	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	chr9	31120074	31120150	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	1	-9.0160
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr12	41596658	41596684	LTR	MTC	MaLR	chr12MTC41596544	ProperStrand	1	1	-inf
chr1	74326660	74326694	protein_coding	Aamp	utr3	ENSMUSG00000006299	NonProperStrand	1	chr1	74341828	74341940	protein_coding	Pnkd	intron	ENSMUSG00000026179	ProperStrand	15	1	-inf
chr11	69070108	69070148	LINE	L1MB4	L1	chr11L1MB469069959	ProperStrand	2	chr17	39847844	39847915	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr6	131376102	131379379	LTR	RMER16	ERVK	chr6RMER16131376107	ProperStrand	18	chr6	131379419	131380923	Other	RMER1B	Other	chr6RMER1B131379406	ProperStrand	14	9	-20.9235
chr18	35283407	35283476	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	chr4	146530067	146530104	protein_coding	Gm13139	intron	ENSMUSG00000067916	ProperStrand	23	1	-12.5904
chr13	40916493	40916593	LTR	MuLV-int	ERV1	chr13MuLV-int40916481	NonProperStrand	1	chr17	39846710	39846800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	35758040	35758060	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	chr5	20887784	20887883	protein_coding	Ccdc146	intron	ENSMUSG00000064280	NonProperStrand	14	1	-11.4556
chr17	39847207	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	79064063	79064081	protein_coding	Wsb1	intron	ENSMUSG00000017677	NonProperStrand	8	2	-5.9593
chr6	115635510	115635610	LTR	RLTR17	ERVK	chr6RLTR17115635015	ProperStrand	1	chr6	115635702	115635792	LTR	RMER3D-int	ERVK	chr6RMER3D-int115635713	ProperStrand	2	1	-inf
chr17	39846341	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	35981689	35981791	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	17	-3.8795
chr4	117202585	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr7	30423472	30423667	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int30422151	ProperStrand	2	1	-20.4235
chr10	108637304	108637374	LINE	L1Md_F	L1	chr10L1Md_F108633637	ProperStrand	1	chr2	31680941	31681021	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	1	-inf
chrX	50164847	50164947	LINE	L1Md_F	L1	chrXL1Md_F50164368	ProperStrand	1	chr13	51725500	51763298	protein_coding	Secisbp2	intron	ENSMUSG00000035139	NonProperStrand	64	1	-inf
chr11	115431085	115431185	protein_coding-noncoding	Nup85	utr5	ENSMUSG00000020739	ProperStrand	2	chr11	115430979	115431071	protein_coding	Nup85	intron	ENSMUSG00000020739	ProperStrand	4	2	-inf
chr9	102270823	102270862	LINE	L1MA9	L1	chr9L1MA9102269814	ProperStrand	1	chr9	102237054	102237166	protein_coding	Ephb1	intron	ENSMUSG00000032537	ProperStrand	10	1	-inf
chr17	39844039	39844067	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr2	91472753	91472845	protein_coding-noncoding	F2	utr3	ENSMUSG00000027249	NonProperStrand	1	1	-inf
chr10	4329376	4329458	LTR	MTA_Mm-int	MaLR	chr10MTA_Mm-int4329328	NonProperStrand	2	chr9	123461864	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39846293	39846354	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	88449830	88450463	protein_coding	Pomt2	utr3	ENSMUSG00000034126	NonProperStrand	15	3	-4.1024
chr6	33772940	33773018	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr4	86478549	86478617	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-7.7249
chr2	29943726	29943826	protein_coding	Pkn3	intron	ENSMUSG00000026785	ProperStrand	5	chr2	29957811	29958534	protein_coding	Zer1	intron	ENSMUSG00000039686	NonProperStrand	19	1	-19.0437
chr11	68842065	68842137	protein_coding	1500010J02Rik	intron	ENSMUSG00000020898	NonProperStrand	6	chr16	33465557	33465638	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	1	-15.2006
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	47102698	47103772	SINE	PB1D10	Alu	chr19PB1D1047102682	ProperStrand	3	1	-4.3512
chr12	109636013	109636080	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	chr11	85314214	85314302	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-5.2954
chr17	39846773	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	38226136	38226219	SINE	B3	B2	chr2B338225997	NonProperStrand	1	1	-inf
chr13	65142283	65142373	LINE	Lx4B	L1	chr13Lx4B65141794	NonProperStrand	1	chr13	65141946	65142046	LINE	Lx4B	L1	chr13Lx4B65141794	ProperStrand	1	1	-inf
chr4	53860704	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr13	44869581	44869715	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	4	-8.0331
chr18	77519313	77519403	LTR	MLT1A0	MaLR	chr18MLT1A077519297	ProperStrand	3	chr18	77519209	77519309	SINE	B4A	B4	chr18B4A77519081	ProperStrand	3	3	-inf
chr4	44016835	44016896	DNA	URR1B	MER1_type	chr4URR1B44016840	ProperStrand	1	chr17	39846460	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	69385926	69386011	protein_coding	Naf1	intron	ENSMUSG00000014907	NonProperStrand	10	chrX	101828685	101828745	protein_coding	Zdhhc15	intron	ENSMUSG00000033906	NonProperStrand	9	1	-20.1232
chr9	123462102	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	86550552	86550587	protein_coding	Me1	intron	ENSMUSG00000032418	ProperStrand	13	1	-3.8693
chr17	39847495	39847585	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	20714545	20714645	LTR	MYSERV16_I-int	ERVK	chrXMYSERV16_I-int20713067	NonProperStrand	5	1	-3.2379
chr2	156009985	156010085	SINE	B1_Mm	Alu	chr2B1_Mm156009974	ProperStrand	1	chr2	156009899	156009989	SINE	B2_Mm1t	B2	chr2B2_Mm1t156009801	ProperStrand	1	1	-inf
chr17	39846759	39846820	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	7607169	7607240	SINE	B1_Mur4	Alu	chr10B1_Mur47607152	ProperStrand	1	1	-inf
chr19	29548023	29548064	LINE	Lx9	L1	chr19Lx929547836	NonProperStrand	1	chr17	39847736	39847810	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846010	39846076	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr17	31847218	31847238	SINE	B1_Mur3	Alu	chr17B1_Mur331847134	ProperStrand	5	1	-6.7797
chr6	82742573	82742618	LINE	Lx2B	L1	chr6Lx2B82742184	NonProperStrand	1	chr9	123462111	123462166	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	20620581	20620640	protein_coding	Ece2	intron	ENSMUSG00000022842	ProperStrand	18	chr13	35845321	35845407	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-10.9371
chr11	115286145	115286162	protein_coding	Kctd2	intron	ENSMUSG00000016940	NonProperStrand	11	chr13	44869576	44869669	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-17.9399
chr12	39380714	39380805	LINE	L1_Mm	L1	chr12L1_Mm39380445	NonProperStrand	1	chr12	39380323	39380423	LINE	L1_Mus2	L1	chr12L1_Mus239379813	ProperStrand	1	1	-inf
chr6	6063390	6063485	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr11	58909538	58909554	protein_coding	Obscn	intron	ENSMUSG00000061462	ProperStrand	36	1	-10.4660
chr17	39843859	39843945	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr18	34833469	34834234	SINE	ID_B1	B4	chr18ID_B134833411	NonProperStrand	2	1	-10.2298
chr9	72461245	72461274	protein_coding	Rfx7	intron	ENSMUSG00000037674	NonProperStrand	17	chr3	9464870	9464973	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-9.0330
chr16	8690816	8691181	protein_coding	Usp7	utr3	ENSMUSG00000022710	ProperStrand	321	chr7	27257986	27258032	protein_coding	Nlrp4a	intron	ENSMUSG00000040601	ProperStrand	15	3	-inf
chr16	67598715	67598815	protein_coding	Cadm2	intron	ENSMUSG00000064115	NonProperStrand	20	chr16	67612084	67612174	protein_coding	Cadm2	intron	ENSMUSG00000064115	ProperStrand	39	1	-15.1237
chr4	18173753	18173843	LINE	Lx8	L1	chr4Lx818173712	NonProperStrand	1	chr4	18173458	18173558	LTR	MTB	MaLR	chr4MTB18173313	ProperStrand	1	1	-inf
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr7	107605894	107605939	protein_coding	C2cd3	intron	ENSMUSG00000047248	ProperStrand	36	1	-5.4836
chr3	157546498	157546588	LINE	L1_Mus3	L1	chr3L1_Mus3157546458	ProperStrand	1	chr3	157542776	157542876	SINE	B3	B2	chr3B3157542719	ProperStrand	1	1	-inf
chr17	39843953	39843991	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr10	80714764	80714812	protein_coding	Zfr2	utr3	ENSMUSG00000034949	NonProperStrand	34	1	-5.0772
chr8	101428429	101428519	SINE	B2_Mm1t	B2	chr8B2_Mm1t101428388	ProperStrand	1	chr8	101428658	101428758	Simple_repeat	(GA)n	Simple_repeat	chr8(GA)n101428659	ProperStrand	1	1	-inf
chr9	114593849	114593949	DNA	RCHARR1	MER1_type	chr9RCHARR1114593681	NonProperStrand	3	chr9	114593950	114594040	SINE	B2_Mm1t	B2	chr9B2_Mm1t114593956	NonProperStrand	1	1	-inf
chr17	56997241	56997265	protein_coding	Acsbg2	intron	ENSMUSG00000024207	NonProperStrand	7	chr2	37543548	37543593	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	1	-15.8401
chr8	69606142	69606242	LTR	ORR1A4	MaLR	chr8ORR1A469606159	ProperStrand	1	chr8	19948555	19948645	lincRNA	Gm17279	intron	ENSMUSG00000091588	ProperStrand	20	1	-inf
chr1	192745649	192745688	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr14	77579082	77582399	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	1	-9.7780
chr11	18279806	18279906	LINE	L1M2	L1	chr11L1M218279772	NonProperStrand	1	chr11	18280403	18280493	LTR	ORR1D1	MaLR	chr11ORR1D118280362	NonProperStrand	1	1	-inf
chr4	131884294	131884405	protein_coding-noncoding	Trnau1ap	utr3	ENSMUSG00000028898	NonProperStrand	9	chr11	16754831	16754850	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	1	-17.9614
chr17	39847800	39847848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	119174990	119175076	Other	RMER1B	Other	chr14RMER1B119174747	ProperStrand	1	1	-inf
chr4	106439443	106439548	protein_coding	Acot11	intron	ENSMUSG00000034853	NonProperStrand	18	chr13	17017012	17017033	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	1	-14.6797
chr17	39845775	39845813	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr19	44110198	44110226	protein_coding	Erlin1	utr3	ENSMUSG00000025198	ProperStrand	38	1	-3.0360
chr5	136510227	136510317	SINE	B1_Mur4	Alu	chr5B1_Mur4136510194	ProperStrand	1	chr5	136510078	136510178	SINE	B3A	B2	chr5B3A136510011	NonProperStrand	1	1	-inf
chr3	116902376	116902455	LINE	L1Md_F	L1	chr3L1Md_F116901483	ProperStrand	5	chr17	39847477	39847498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr17	26284032	26284095	protein_coding	Axin1	intron	ENSMUSG00000024182	ProperStrand	20	chr2	151559465	151559553	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	58	1	-14.3233
chr1	167271683	167284909	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	chr1	167237569	167284796	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	6	-21.1635
chr18	56576471	56576565	protein_coding	Gramd3	intron	ENSMUSG00000001700	ProperStrand	9	chr9	123462082	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr4	130334219	130334237	lincRNA	Gm17328	intron	ENSMUSG00000091343	ProperStrand	1	chr4	130335957	130335985	protein_coding	Pum1	utr3	ENSMUSG00000028580	NonProperStrand	34	1	-inf
chr16	21035830	21035930	LINE	L1Md_F	L1	chr16L1Md_F21035814	ProperStrand	1	chr16	21035711	21035801	LTR	MYSERV6-int	ERVK	chr16MYSERV6-int21035382	NonProperStrand	1	1	-inf
chr9	69475591	69475681	LTR	RMER5	ERV1	chr9RMER569475515	ProperStrand	1	chr9	69475435	69475535	SINE	RSINE1	B4	chr9RSINE169475433	ProperStrand	1	1	-inf
chr10	128557888	128557971	LTR	RLTR11B	ERVK	chr10RLTR11B128557652	NonProperStrand	1	chr17	39847816	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	104636715	104636733	protein_coding	Ints4	intron	ENSMUSG00000025133	NonProperStrand	6	chr17	30802277	30802342	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	1	-15.9050
chr2	99979628	99979728	LINE	Lx2	L1	chr2Lx299979020	ProperStrand	1	chr17	87029199	87029289	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	1	-inf
chr18	6042433	6042523	protein_coding	Arhgap12	intron	ENSMUSG00000041225	ProperStrand	63	chr2	28822528	28822629	protein_coding	1700101E01Rik	intron	ENSMUSG00000079502	ProperStrand	41	1	-12.6938
chr3	90295129	90295205	Simple_repeat	(TTTC)n	Simple_repeat	chr3(TTTC)n90295142	ProperStrand	3	chr3	90323253	90323339	protein_coding	S100a13	intron	ENSMUSG00000042312	ProperStrand	10	1	-20.3377
chr5	56361691	56361791	LINE	L1_Mus2	L1	chr5L1_Mus256361519	NonProperStrand	1	chr5	56361379	56361469	LINE	Lx2	L1	chr5Lx256361190	NonProperStrand	1	1	-inf
chr1	122357204	122357233	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr11	119807127	119807244	protein_coding	Baiap2	intron	ENSMUSG00000025372	ProperStrand	75	1	-8.4618
chr14	20683142	20683232	LTR	ORR1B1-int	MaLR	chr14ORR1B1-int20683015	ProperStrand	1	chr14	20682893	20682993	LTR	ORR1B1	MaLR	chr14ORR1B120682629	ProperStrand	1	1	-inf
chr17	39847611	39847649	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	140357817	140357929	LTR	MTC	MaLR	chr5MTC140357533	NonProperStrand	2	1	-5.4040
chr7	5409449	5409549	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	chr14	33967481	33967571	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-13.7665
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr2	63818547	63818633	protein_coding	Fign	exon	ENSMUSG00000075324	ProperStrand	77	1	-9.7781
chr4	108778797	108778841	protein_coding	Osbpl9	intron	ENSMUSG00000028559	ProperStrand	19	chr18	80442880	80442990	protein_coding	Hsbp1l1	intron	ENSMUSG00000078963	ProperStrand	64	1	-14.2269
chr17	46188006	46188096	SINE	B4A	B4	chr17B4A46187898	NonProperStrand	2	chr17	46187795	46187895	SINE	PB1D10	Alu	chr17PB1D1046187801	NonProperStrand	1	1	-inf
chr10	42239822	42239899	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	chr2	121723709	121723773	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-9.3372
chr17	39847033	39847133	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	44408055	44408747	SINE	B1_Mus1	Alu	chr9B1_Mus144408619	ProperStrand	4	1	-3.6552
chr4	43070340	43070430	SINE	B3	B2	chr4B343070301	NonProperStrand	2	chr4	43070466	43070567	SINE	ID_B1	B4	chr4ID_B143070481	NonProperStrand	2	2	-inf
chr4	59819122	59899576	protein_coding	Snx30	intron	ENSMUSG00000028385	ProperStrand	123	chr4	59805996	59810201	protein_coding	1110054O05Rik	intron	ENSMUSG00000038544	NonProperStrand	25	2	-20.3159
chr17	39847823	39847868	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	43181663	43181709	LTR	MTB-int	MaLR	chr8MTB-int43180819	ProperStrand	1	1	-inf
chr13	23432985	23438161	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	NonProperStrand	29	chr9	123461903	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.2823
chr15	7654264	7654364	LINE	L1Md_F3	L1	chr15L1Md_F37654253	NonProperStrand	1	chr15	7654452	7654542	LTR	MTEb	MaLR	chr15MTEb7654451	ProperStrand	1	1	-inf
chr17	39847275	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	15938760	15938858	LTR	LTRIS_Mus	ERV1	chr7LTRIS_Mus15938504	ProperStrand	14	2	-4.2566
chr14	16279265	16279365	lincRNA	Gm17628	intron	ENSMUSG00000090616	NonProperStrand	1	chr14	16281607	16281697	lincRNA	Gm17628	intron	ENSMUSG00000090616	ProperStrand	2	1	-inf
chr5	74093614	74093650	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	7	chr2	37666330	37666394	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	1	-13.0021
chr8	106131424	106131524	DNA	MER5B	MER1_type	chr8MER5B106131438	NonProperStrand	1	chr8	106131267	106131357	SINE	B2_Mm2	B2	chr8B2_Mm2106131271	ProperStrand	1	1	-inf
chrX	61744923	61745012	LINE	L1Md_A	L1	chrXL1Md_A61742341	ProperStrand	1	chr8	14043121	14043155	protein_coding	Erich1	intron	ENSMUSG00000051978	NonProperStrand	2	1	-inf
chr13	23354756	23354781	LTR	MMERVK10C-int	ERVK	chr13MMERVK10C-int23353189	NonProperStrand	1	chr13	97085635	97085730	LTR	RNLTR23	ERVK	chr13RNLTR2397085588	ProperStrand	1	1	-inf
chr2	78632395	78632495	LINE	L1_Rod	L1	chr2L1_Rod78632373	ProperStrand	1	chr2	78632712	78632802	LINE	Lx9	L1	chr2Lx978632491	NonProperStrand	1	1	-inf
chr17	39847709	39847800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	77008172	77008237	protein_coding	Itgb2	intron	ENSMUSG00000000290	NonProperStrand	2	1	-5.4040
chr2	5379307	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr7	19586523	19586597	protein_coding	Mypop	utr3	ENSMUSG00000048481	NonProperStrand	6	1	-9.2270
chr7	127770082	127770171	Other	RMER1C	Other	chr7RMER1C127769761	NonProperStrand	1	chr5	19989433	19989454	protein_coding	Magi2	intron	ENSMUSG00000040003	NonProperStrand	35	1	-inf
chr9	4843426	4843516	LINE	L1_Mus2	L1	chr9L1_Mus24843416	ProperStrand	1	chr9	4843253	4843353	LINE	Lx7	L1	chr9Lx74843244	NonProperStrand	1	1	-inf
chr2	10763607	10763625	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n10763587	ProperStrand	1	chr2	77348388	77348479	protein_coding	Zfp385b	intron	ENSMUSG00000027016	NonProperStrand	10	1	-inf
chr7	103953716	103953816	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	chr7	103958099	103958189	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-12.4317
chr7	5965590	5965607	LINE	L1Md_F2	L1	chr7L1Md_F25965365	NonProperStrand	1	chr9	123462009	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	24832476	24832507	protein_coding	Mll3	intron	ENSMUSG00000038056	ProperStrand	134	chr3	88588261	88588351	pseudogene	5830417I10Rik	.	ENSMUSG00000078684	ProperStrand	52	1	-10.6974
chr12	84756101	84756179	LTR	MLT1D	MaLR	chr12MLT1D84756035	ProperStrand	1	chr17	39847277	39847343	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	22744838	22744905	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr14	62367933	62368029	LTR	ORR1B1-int	MaLR	chr14ORR1B1-int62367004	NonProperStrand	1	1	-inf
chr18	77487782	77491723	protein_coding	St8sia5	intron	ENSMUSG00000025425	NonProperStrand	23	chr18	77527968	77560768	protein_coding	Loxhd1	intron	ENSMUSG00000032818	NonProperStrand	260	2	-17.3490
chr11	20192501	20192564	LTR	RLTR41	ERV1	chr11RLTR4120192259	ProperStrand	1	chr2	5379266	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr7	144477940	144477956	protein_coding	Ebf3	intron	ENSMUSG00000010476	NonProperStrand	5	chr9	123461884	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr13	17915810	17915849	LINE	L1Md_F2	L1	chr13L1Md_F217915690	NonProperStrand	1	chr17	39846952	39846975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	54401056	54401146	LTR	MTC	MaLR	chr3MTC54400990	ProperStrand	1	chr3	54400835	54400935	SINE	B1_Mm	Alu	chr3B1_Mm54400820	NonProperStrand	1	1	-inf
chr13	24471929	24471953	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	chr5	125083601	125083732	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	301	1	-10.9169
chr11	105922647	105922663	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	chr11	94283466	94283587	protein_coding	Cacna1g	intron	ENSMUSG00000020866	ProperStrand	40	1	-18.1291
chr1	161876198	161876316	LINE	L1Md_F2	L1	chr1L1Md_F2161875620	NonProperStrand	1	chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	59176957	59177000	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n59176654	NonProperStrand	1	1	-inf
chr3	106546926	106547003	LINE	L1Md_F2	L1	chr3L1Md_F2106544428	ProperStrand	1	chr3	106539301	106539368	protein_coding	4933421E11Rik	utr3	ENSMUSG00000056260	NonProperStrand	16	1	-inf
chr13	51150282	51150327	LTR	MLT2B2	ERVL	chr13MLT2B251150263	NonProperStrand	1	chr17	39846791	39846814	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	16370347	16378372	LINE	L1_Mur3	L1	chr7L1_Mur316370361	NonProperStrand	18	chr7	16378383	16387658	LTR	MTA_Mm	MaLR	chr7MTA_Mm16378399	NonProperStrand	8	8	-inf
chr7	13025013	13025359	LINE	L1MB8	L1	chr7L1MB813025199	ProperStrand	5	chr7	13024903	13025183	LINE	L1_Mus1	L1	chr7L1_Mus113018915	NonProperStrand	76	5	-inf
chr14	119010105	119010130	protein_coding	Abcc4	intron	ENSMUSG00000032849	ProperStrand	24	chr2	71875337	71875451	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-12.1916
chr5	134593326	134594230	protein_coding	Gatsl2	intron	ENSMUSG00000015944	ProperStrand	38	chrX	85089857	85105189	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	NonProperStrand	79	1	-12.3924
chr13	22035871	22036007	antisense	Gm11280	.	ENSMUSG00000085393	NonProperStrand	6	chr5	8429686	8429704	protein_coding	Slc25a40	intron	ENSMUSG00000054099	NonProperStrand	4	1	-inf
chrX	150557155	150557205	LINE	L1_Mus1	L1	chrXL1_Mus1150556684	ProperStrand	4	chr9	123461880	123461990	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr13	109445391	109445425	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr14	77643526	77643637	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	1	-5.3299
chr17	3232789	3232819	LINE	L2c	L2	chr17L2c3232728	NonProperStrand	4	chr1	135613580	135613620	protein_coding	Atp2b4	intron	ENSMUSG00000026463	ProperStrand	26	2	-inf
chr9	7801521	7801608	LTR	MMETn-int	ERVK	chr9MMETn-int7800758	ProperStrand	1	chr17	39843438	39843491	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39846428	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	34207538	34207602	protein_coding	Mapk8	intron	ENSMUSG00000021936	NonProperStrand	2	1	-5.3533
chr8	47503944	47503974	LINE	Lx9	L1	chr8Lx947503287	NonProperStrand	1	chr15	83149677	83149697	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-inf
chr10	98933453	98933543	LTR	ORR1A2	MaLR	chr10ORR1A298933389	NonProperStrand	5	chr4	141459271	141459371	protein_coding	Fhad1	intron	ENSMUSG00000051435	NonProperStrand	17	1	-19.2464
chr3	98018066	98018156	SINE	ID_B1	B4	chr3ID_B198017947	ProperStrand	2	chr3	98018271	98018371	Simple_repeat	(GGAGAA)n	Simple_repeat	chr3(GGAGAA)n98018197	ProperStrand	1	1	-inf
chr5	110756648	110756748	protein_coding-noncoding	Pole	utr5	ENSMUSG00000007080	NonProperStrand	1	chr1	152567426	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	1	-inf
chr17	4082170	4082239	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr15	42877212	42877272	protein_coding	Rspo2	intron	ENSMUSG00000051920	NonProperStrand	4	1	-13.3302
chr17	39847804	39847856	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	71484489	71484755	LTR	RLTR20B2	ERVK	chr8RLTR20B271484425	NonProperStrand	1	1	-inf
chr12	107951994	107952098	lincRNA	4933406K04Rik	intron	ENSMUSG00000085820	ProperStrand	28	chr11	19965675	19965706	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	2	-17.8622
chr4	101254038	101254110	protein_coding	Dnajc6	intron	ENSMUSG00000028528	NonProperStrand	58	chr8	18750138	18750220	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-6.9770
chr10	4091485	4091560	LINE	L1_Mus1	L1	chr10L1_Mus14090288	NonProperStrand	2	chr17	39848506	39848571	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-8.7208
chr1	80552723	80552740	protein_coding	Dock10	intron	ENSMUSG00000038608	ProperStrand	6	chr15	86326951	86327084	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-13.5532
chr17	39846816	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	130609409	130609484	protein_coding-noncoding	4930402H24Rik	utr3	ENSMUSG00000027309	ProperStrand	3	1	-4.3017
chr3	31346768	31346858	LTR	RLTR1B-int	ERV1	chr3RLTR1B-int31346640	NonProperStrand	1	chr3	31346512	31346612	LTR	RLTR1B	ERV1	chr3RLTR1B31346140	NonProperStrand	1	1	-inf
chr2	26630764	26630896	LINE	L1_Mus1	L1	chr2L1_Mus126629419	NonProperStrand	1	chr5	146261278	146261304	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-inf
chr3	57536804	57536863	LTR	RLTR25B	ERVK	chr3RLTR25B57536249	NonProperStrand	3	chr17	34998810	34998879	protein_coding	Gm20547	exon	ENSMUSG00000092511	ProperStrand	14	1	-20.0603
chr19	5797391	5797450	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr2	102006616	102006678	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-3.1967
chr12	110526482	110526538	LINE	L1_Mm	L1	chr12L1_Mm110526237	ProperStrand	11	chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	1	-14.0640
chr5	116086780	116086880	protein_coding	Rab35	intron	ENSMUSG00000029518	NonProperStrand	2	chr5	115721086	115721176	protein_coding	Rnf10	intron	ENSMUSG00000041740	ProperStrand	41	1	-20.9076
chr11	33438358	33438458	LTR	MLT1B	MaLR	chr11MLT1B33438209	NonProperStrand	2	chr11	33438468	33438558	LTR	MTEa	MaLR	chr11MTEa33438467	ProperStrand	2	2	-inf
chr17	39846739	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	79117080	79151726	protein_coding	Pla2g6	intron	ENSMUSG00000042632	NonProperStrand	42	6	-3.7553
chr2	164500192	164500432	LTR	ORR1D2	MaLR	chr2ORR1D2164500087	ProperStrand	2	chr4	126476280	126476371	protein_coding	AU040320	intron	ENSMUSG00000028830	ProperStrand	7	2	-inf
chr16	91742075	91742102	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	chr3	126921907	126921934	protein_coding	Ank2	intron	ENSMUSG00000032826	ProperStrand	19	1	-12.5566
chr17	39846443	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	68904372	68904534	protein_coding	Vamp2	utr3	ENSMUSG00000020894	ProperStrand	37	5	-3.2424
chr15	93268200	93268251	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	chr17	66005669	66005730	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	80	1	-11.6195
chr10	21480512	21480529	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	11	chr5	146261237	146261283	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-14.8392
chr6	48840456	48840556	LTR	RMER15-int	ERVL	chr6RMER15-int48839913	NonProperStrand	6	chr6	48840554	48840644	LTR	RMER15-int	ERVL	chr6RMER15-int48840572	NonProperStrand	6	6	-inf
chr10	80721199	80721311	protein_coding	Matk	utr5	ENSMUSG00000004933	NonProperStrand	27	chr5	115490328	115490377	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-10.7677
chr5	139445112	139445201	Simple_repeat	(TGGG)n	Simple_repeat	chr5(TGGG)n139445138	NonProperStrand	1	chr17	5082193	5082231	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-inf
chr17	35001641	35001747	protein_coding	C2	intron	ENSMUSG00000024371	NonProperStrand	158	chr3	131233784	131233835	protein_coding	Papss1	intron	ENSMUSG00000028032	NonProperStrand	45	1	-10.6590
chr7	81344862	81344922	LTR	MT2A	ERVL	chr7MT2A81344415	NonProperStrand	8	chr12	8282706	8282746	protein_coding	1110057K04Rik	intron	ENSMUSG00000037669	ProperStrand	64	1	-16.0398
chr1	127282619	127282719	SINE	RSINE1	B4	chr1RSINE1127282545	ProperStrand	2	chr7	109520579	109521627	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	2	-inf
chrX	151056583	151056614	LINE	L1_Mur2	L1	chrXL1_Mur2151056412	ProperStrand	1	chr9	123462081	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	51883323	51883413	LINE	Lx	L1	chr15Lx51882808	ProperStrand	3	chr16	34716635	34716735	protein_coding	Ccdc14	intron	ENSMUSG00000022833	ProperStrand	25	1	-19.8841
chr10	84689250	84689340	DNA	URR1A	MER1_type	chr10URR1A84689272	ProperStrand	1	chr10	84689077	84689177	LTR	MTD	MaLR	chr10MTD84688784	NonProperStrand	1	1	-inf
chr5	113513848	113513948	LTR	MTE2a	MaLR	chr5MTE2a113513843	NonProperStrand	1	chr5	114897754	114897844	protein_coding	Mvk	intron	ENSMUSG00000041939	NonProperStrand	3	1	-inf
chr2	129275524	129275614	LINE	L1Md_T	L1	chr2L1Md_T129273882	ProperStrand	2	chr17	39847248	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chrX	4899367	4899407	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr17	39847513	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	4	-5.1939
chr17	39848098	39848125	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	21805024	21805041	lincRNA	1300002E11Rik	exon	ENSMUSG00000086651	NonProperStrand	1	1	-inf
chr2	59225459	59225559	SINE	B1_Mus2	Alu	chr2B1_Mus259225456	NonProperStrand	7	chr2	59225357	59225447	lincRNA	5330411J11Rik	exon	ENSMUSG00000087455	NonProperStrand	31	7	-inf
chr17	85292680	85292780	LTR	RLTR18B	ERVK	chr17RLTR18B85292676	ProperStrand	1	chr17	85292317	85292407	SINE	B4A	B4	chr17B4A85292184	ProperStrand	1	1	-inf
chr17	39847740	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	50565599	50565654	SINE	B1_Mus1	Alu	chr6B1_Mus150565510	ProperStrand	4	2	-6.7714
chr15	86194891	86194942	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	chr12	109721575	109721636	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-4.6306
chr9	64176963	64177058	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr5	135009627	135009644	protein_coding	Clip2	intron	ENSMUSG00000063146	NonProperStrand	37	1	-9.9174
chr4	101618677	101618696	LINE	L1VL2	L1	chr4L1VL2101618283	ProperStrand	3	chr4	101618746	101623712	LTR	ORR1A0	MaLR	chr4ORR1A0101618769	NonProperStrand	3	3	-inf
chr7	144487712	144487775	protein_coding	Ebf3	intron	ENSMUSG00000010476	ProperStrand	116	chr9	31177935	31177988	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	1	-8.8358
chr17	39847903	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	34676965	34677001	Other	RMER1B	Other	chr14RMER1B34676171	NonProperStrand	2	1	-5.4040
chr17	39847926	39847982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	109016951	109017011	protein_coding	Folr1	utr5	ENSMUSG00000001827	NonProperStrand	2	1	-5.4040
chr16	51613286	51613386	LINE	Lx7	L1	chr16Lx751613151	ProperStrand	1	chr16	51613550	51613640	LINE	Lx9	L1	chr16Lx951613491	ProperStrand	1	1	-inf
chr9	43105415	43105501	LINE	L1MC	L1	chr9L1MC43105282	NonProperStrand	3	chr9	43042645	43105199	protein_coding	Oaf	intron	ENSMUSG00000032014	ProperStrand	13	1	-inf
chr17	39848436	39848469	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	61170274	61170297	SINE	MIRb	MIR	chr9MIRb61170107	ProperStrand	3	1	-7.3534
chr17	35443470	35443486	DNA	Charlie4z	MER1_type	chr17Charlie4z35443377	ProperStrand	1	chr4	150362551	150362654	SINE	RSINE1	B4	chr4RSINE1150362558	ProperStrand	1	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr13	113830876	113830938	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	1	-7.9534
chr4	13689205	13689305	protein_coding	Runx1t1	intron	ENSMUSG00000006586	ProperStrand	16	chr17	55652237	55652327	protein_coding	St6gal2	utr3	ENSMUSG00000024172	NonProperStrand	4	1	-inf
chr14	56748080	56748144	SINE	B1_Mur2	Alu	chr14B1_Mur256748074	NonProperStrand	1	chr14	56777855	56777928	protein_coding	Gzmg	intron	ENSMUSG00000040284	ProperStrand	4	1	-inf
chr13	20936389	20936453	protein_coding	Aoah	intron	ENSMUSG00000021322	ProperStrand	24	chr6	94019386	94019471	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-8.1181
chr6	22672242	22672342	LINE	L1Md_A	L1	chr6L1Md_A22672074	NonProperStrand	1	chr6	22671968	22672058	LTR	MTA_Mm-int	MaLR	chr6MTA_Mm-int22671284	NonProperStrand	1	1	-inf
chr14	124176619	124176638	protein_coding	Itgbl1	intron	ENSMUSG00000032925	NonProperStrand	11	chr17	5250673	5250772	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-12.0109
chr15	77967402	77967424	processed_transcript	A730060N03Rik	.	ENSMUSG00000092375	NonProperStrand	58	chr1	84405270	84405351	protein_coding	Dner	intron	ENSMUSG00000036766	ProperStrand	50	1	-12.4587
chr5	110395290	110395395	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110394425	NonProperStrand	4	chr5	110381823	110381867	LTR	ORR1D-int	MaLR	chr5ORR1D-int110381801	NonProperStrand	2	1	-20.9262
chr3	45487417	45487507	LINE	L1_Mur2	L1	chr3L1_Mur245487317	NonProperStrand	1	chr3	45487546	45487646	LTR	ORR1D1	MaLR	chr3ORR1D145487570	NonProperStrand	1	1	-inf
chr1	184350564	184350664	protein_coding	Trp53bp2	intron	ENSMUSG00000026510	NonProperStrand	5	chr1	184502057	184502147	protein_coding	Capn8	intron	ENSMUSG00000038599	ProperStrand	3	1	-inf
chr17	48415264	48415320	LTR	RLTR20B3	ERVK	chr17RLTR20B348415055	ProperStrand	1	chr9	123461931	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847507	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	152319262	152322213	Other	RMER1B	Other	chr2RMER1B152320719	ProperStrand	1	1	-inf
chr5	146261024	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	50630976	50635010	protein_coding	Fam122c	intron	ENSMUSG00000036013	NonProperStrand	15	1	-7.8289
chr2	170517551	170517585	LTR	ORR1E	MaLR	chr2ORR1E170517558	ProperStrand	1	chr9	123461942	123462005	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	39272846	39272936	DNA	MER2B	MER2_type	chr6MER2B39272817	ProperStrand	1	chr6	39272732	39272832	LTR	MER74A	ERVL	chr6MER74A39272556	ProperStrand	1	1	-inf
chr10	80901780	80901800	LINE	L1Md_F2	L1	chr10L1Md_F280901550	ProperStrand	13	chr14	70308667	70308801	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	65	1	-14.9934
chr8	70895772	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr16	19883803	19883820	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-7.4529
chr4	116610906	116610995	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	chr18	37637920	37637939	protein_coding	Pcdhb16	exon	ENSMUSG00000047910	ProperStrand	1	1	-inf
chr19	45776186	45776955	LTR	IAPEz-int	ERVK	chr19IAPEz-int45773954	NonProperStrand	10	chr19	45773732	45773759	LTR	IAPLTR1a_Mm	ERVK	chr19IAPLTR1a_Mm45773614	NonProperStrand	1	1	-inf
chr2	146871385	146871485	protein_coding	Xrn2	intron	ENSMUSG00000027433	NonProperStrand	4	chr2	146895567	146895657	protein_coding	Xrn2	intron	ENSMUSG00000027433	ProperStrand	27	1	-19.4870
chr1	161036075	161036115	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr14	65557053	65557083	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	1	-12.1931
chr17	39847692	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	125633395	125633424	protein_coding	Itpripl2	exon	ENSMUSG00000073858	NonProperStrand	1	1	-inf
chr4	14734667	14734757	LINE	Lx2B	L1	chr4Lx2B14734265	ProperStrand	1	chr4	14735041	14735141	LINE	Lx2B	L1	chr4Lx2B14734678	ProperStrand	1	1	-inf
chr5	36796269	36796352	lincRNA	2210406O10Rik	intron	ENSMUSG00000039563	ProperStrand	73	chr6	95493432	95493497	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-9.7369
chr2	27348187	27348313	protein_coding	Brd3	intron	ENSMUSG00000026918	ProperStrand	76	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-6.1042
chr2	22744838	22744918	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	118569020	118572933	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	2	-7.2337
chr14	19950852	19950884	LINE	L1MD1	L1	chr14L1MD119950845	ProperStrand	4	chr5	124865215	124865339	protein_coding	Sbno1	intron	ENSMUSG00000038095	NonProperStrand	18	1	-20.2607
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr7	140126462	140126490	protein_coding	Zranb1	intron	ENSMUSG00000030967	ProperStrand	28	1	-8.0956
chr6	97992683	97992786	LINE	L2a	L2	chr6L2a97992709	NonProperStrand	1	chr6	97967527	97967563	protein_coding	Mitf	intron	ENSMUSG00000035158	ProperStrand	50	1	-inf
chr17	39846822	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	110170027	110170146	Simple_repeat	(GGGAA)n	Simple_repeat	chr2(GGGAA)n110169976	ProperStrand	1	1	-inf
chr16	11143905	11143995	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	chr7	141009707	141009723	protein_coding	Fank1	intron	ENSMUSG00000053111	ProperStrand	73	1	-8.6764
chr15	80078500	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr19	3576299	3576348	tRNA	tRNA8-AlaAGC	.	374298	ProperStrand	1	1	-inf
chr8	71889246	71889262	LINE	L1Md_F2	L1	chr8L1Md_F271887114	NonProperStrand	3	chr17	39843404	39843485	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-8.6612
chr11	118008410	118008437	protein_coding	Cyth1	intron	ENSMUSG00000017132	NonProperStrand	253	chr1	72536422	72536439	protein_coding	March4	intron	ENSMUSG00000039372	ProperStrand	4	1	-14.8220
chr8	13758153	13759178	protein_coding-noncoding	Cdc16	utr5	ENSMUSG00000038416	ProperStrand	5	chr8	13758279	13758833	protein_coding	Cdc16	intron	ENSMUSG00000038416	ProperStrand	27	5	-inf
chr11	50295219	50295288	LTR	MT2A	ERVL	chr11MT2A50295019	ProperStrand	3	chr17	39846818	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr9	38085726	38085742	LTR	ORR1D1	MaLR	chr9ORR1D138085704	NonProperStrand	1	chr19	4197510	4197611	protein_coding	Rad9	intron	ENSMUSG00000024824	ProperStrand	25	1	-inf
chr17	39846473	39846534	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	35235613	35239389	LTR	ORR1A2-int	MaLR	chr18ORR1A2-int35234013	ProperStrand	2	1	-5.3533
chr1	122357183	122357225	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr16	52059877	52059912	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	1	-8.0110
chr5	118684607	118684707	protein_coding	Rnft2	intron	ENSMUSG00000032850	NonProperStrand	136	chr3	31205967	31206058	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	23	2	-19.1687
chr15	76471878	76471978	SINE	B3	B2	chr15B376471903	ProperStrand	1	chr15	76472024	76472114	SINE	B3	B2	chr15B376472042	NonProperStrand	1	1	-inf
chr11	34446623	34446642	protein_coding	Dock2	intron	ENSMUSG00000020143	ProperStrand	20	chr7	30160033	30160159	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	ProperStrand	147	1	-12.4521
chr6	99128900	99128990	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	chr8	125656224	125656324	protein_coding	Cpne7	intron	ENSMUSG00000034796	ProperStrand	2	1	-17.5652
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chrX	129764356	129764377	LINE	L1VL2	L1	chrXL1VL2129761875	NonProperStrand	3	1	-13.1573
chr5	21234069	21234169	LINE	MusHAL1	L1	chr5MusHAL121234041	ProperStrand	1	chr5	21233905	21233995	LTR	ORR1A0	MaLR	chr5ORR1A021233695	ProperStrand	1	1	-inf
chr9	70033919	70033935	lincRNA	Gm17406	intron	ENSMUSG00000091654	ProperStrand	4	chr2	5379275	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.1399
chr14	99940189	99940292	LINE	L1Md_F2	L1	chr14L1Md_F299939517	ProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr13	62528216	62528306	LTR	RMER12	ERVK	chr13RMER1262528219	NonProperStrand	1	chr13	62528114	62528214	SINE	B1_Mus2	Alu	chr13B1_Mus262528080	ProperStrand	1	1	-inf
chr3	95659629	95659725	protein_coding	Prpf3	utr5	ENSMUSG00000015748	NonProperStrand	78	chr2	5379325	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0500
chr2	92314478	92314568	LTR	ORR1D1	MaLR	chr2ORR1D192314437	NonProperStrand	1	chr2	92314609	92314709	Simple_repeat	(GGGAGA)n	Simple_repeat	chr2(GGGAGA)n92314624	ProperStrand	1	1	-inf
chr8	33610668	33610708	LINE	L1Md_F2	L1	chr8L1Md_F233609946	ProperStrand	2	chr17	39847257	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr10	128072114	128074278	protein_coding	Ikzf4	intron	ENSMUSG00000002578	NonProperStrand	38	chr6	148796761	148798707	protein_coding	Caprin2	intron	ENSMUSG00000030309	ProperStrand	14	1	-15.9098
chr8	84669458	84669558	LINE	L1_Mur2	L1	chr8L1_Mur284669455	NonProperStrand	1	chr8	84669608	84669699	LINE	L1_Mur2	L1	chr8L1_Mur284669586	NonProperStrand	4	1	-inf
chr7	63929241	63929340	LINE	Lx5	L1	chr7Lx563929090	ProperStrand	2	chr17	39847952	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr7	100546114	100546204	LINE	L1_Mus4	L1	chr7L1_Mus4100546122	NonProperStrand	2	chr7	100545988	100546088	LTR	ORR1D2	MaLR	chr7ORR1D2100545914	ProperStrand	2	2	-inf
chr12	110694278	110694605	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	chr16	11447931	11448021	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-6.2439
chr14	27388078	27388126	LTR	MTD	MaLR	chr14MTD27388003	ProperStrand	1	chr17	39847273	39847307	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39847213	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	122618591	122618681	LTR	MT2_Mm	ERVL	chr9MT2_Mm122618498	ProperStrand	1	1	-inf
chr1	178827781	178827867	protein_coding	Sdccag8	intron	ENSMUSG00000026504	ProperStrand	9	chr11	95704660	95704721	protein_coding	Gngt2	utr5	ENSMUSG00000038811	ProperStrand	1	1	-inf
chr16	73153684	73153784	DNA	MER94	AcHobo	chr16MER9473153686	NonProperStrand	1	chr16	73153802	73153892	SINE	MIR	MIR	chr16MIR73153820	ProperStrand	1	1	-inf
chr2	180056176	180056276	LINE	Lx6	L1	chr2Lx6180056196	ProperStrand	1	chr2	180056035	180056125	SINE	B2_Mm2	B2	chr2B2_Mm2180056021	NonProperStrand	1	1	-inf
chr2	22744877	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr18	60776545	60776994	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	1	-4.9503
chr4	130533995	130534018	lincRNA	Gm12973	intron	ENSMUSG00000085804	NonProperStrand	45	chr1	175685756	175685828	protein_coding	Ifi204	exon	ENSMUSG00000073489	ProperStrand	13	2	-inf
chr2	59267123	59267142	LTR	ORR1A2	MaLR	chr2ORR1A259266860	NonProperStrand	1	chr2	59266644	59266784	LTR	RLTR18-int	ERVK	chr2RLTR18-int59266118	ProperStrand	4	1	-inf
chr9	123462112	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	52922915	52922991	protein_coding	Hibch	intron	ENSMUSG00000041426	ProperStrand	10	1	-4.3847
chr7	16431391	16431443	LINE	L1_Mur2	L1	chr7L1_Mur216429637	ProperStrand	1	chr17	39846932	39847005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	175170795	175170836	LTR	MYSERV16_I-int	ERVK	chr2MYSERV16_I-int175170648	NonProperStrand	2	chr2	119960907	119960958	protein_coding	Ehd4	intron	ENSMUSG00000027293	NonProperStrand	78	1	-18.6632
chr4	107385526	107385587	lincRNA	1700047F07Rik	intron	ENSMUSG00000085549	ProperStrand	49	chr11	101604936	101605036	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-12.8810
chr14	66272224	66272292	LINE	L1MEc	L1	chr14L1MEc66271310	NonProperStrand	1	chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	82916798	82916817	protein_coding	D6Mm5e	intron	ENSMUSG00000030041	ProperStrand	2	chr17	32825175	32825297	protein_coding	Cyp4f15	intron	ENSMUSG00000073424	NonProperStrand	7	1	-21.1088
chr11	80462620	80465022	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	chr19	37379798	37379846	protein_coding	Ide	intron	ENSMUSG00000056999	NonProperStrand	32	1	-12.3273
chr17	39847277	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	94862910	94862967	lincRNA	Gm12708	intron	ENSMUSG00000084918	ProperStrand	2	1	-6.5615
chr18	12933630	12933694	protein_coding	Osbpl1a	intron	ENSMUSG00000044252	ProperStrand	48	chr4	119136332	119136389	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-8.1797
chr17	39846940	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	32204038	32204089	LTR	RMER19A	ERVK	chr17RMER19A32203719	ProperStrand	3	1	-4.3017
chrX	103471754	103471854	LINE	L1Md_F2	L1	chrXL1Md_F2103469145	NonProperStrand	25	chr4	34662588	34662679	protein_coding	1700003M02Rik	intron	ENSMUSG00000028294	NonProperStrand	23	1	-15.7527
chr10	81416092	81416143	SINE	B2_Mm2	B2	chr10B2_Mm281416004	ProperStrand	2	chr10	81415138	81415216	Satellite	MMSAT4	Satellite	chr10MMSAT481415130	NonProperStrand	2	2	-inf
chr15	36973885	36973975	LTR	ORR1A4	MaLR	chr15ORR1A436973876	ProperStrand	1	chr15	36973776	36973876	lincRNA	Gm16631	intron	ENSMUSG00000086388	NonProperStrand	6	1	-inf
chr11	12464347	12464442	LTR	IAPEz-int	ERVK	chr11IAPEz-int12462249	NonProperStrand	29	chr11	12444710	12444736	LTR	RMER17C-int	ERVK	chr11RMER17C-int12444708	ProperStrand	2	1	-19.6718
chr10	4324046	4324128	LTR	RMER6D	ERVK	chr10RMER6D4324062	ProperStrand	1	chr17	39846589	39846660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	90767454	90767488	SINE	RSINE1	B4	chr2RSINE190767403	NonProperStrand	10	chr2	90751607	90752863	protein_coding	Ptpmt1	intron	ENSMUSG00000063235	NonProperStrand	4	1	-inf
chr10	83474543	83474599	LINE	L1MEg	L1	chr10L1MEg83474142	ProperStrand	1	chr10	83474599	83474684	SINE	B3A	B2	chr10B3A83474602	ProperStrand	1	1	-inf
chr17	39846954	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	3414386	3414423	protein_coding	Tiam2	exon	ENSMUSG00000023800	ProperStrand	4	1	-3.6552
chr2	15435342	15435432	LTR	RLTR27	ERVK	chr2RLTR2715435336	NonProperStrand	1	chr5	30060663	30060763	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	1	-inf
chr8	79147364	79147503	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-7.4212
chr9	123462033	123462072	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	53046688	53046746	protein_coding	Ddx10	intron	ENSMUSG00000053289	ProperStrand	7	1	-5.1121
chrX	142966429	142966493	LINE	Lx3B	L1	chrXLx3B142965534	NonProperStrand	1	chr17	39847804	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	68557628	68557703	LINE	L1Md_T	L1	chr3L1Md_T68557308	NonProperStrand	4	chr17	39846921	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr6	33884487	33884509	protein_coding	Exoc4	intron	ENSMUSG00000029763	NonProperStrand	12	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.6975
chr6	3201474	3201517	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	87490501	87490551	protein_coding	Cct8	intron	ENSMUSG00000025613	ProperStrand	46	1	-3.3751
chr2	89528306	89528323	LINE	L1_Mm	L1	chr2L1_Mm89527548	NonProperStrand	2	chr17	39847636	39847768	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	11804333	11804398	LTR	ORR1A2-int	MaLR	chr11ORR1A2-int11804135	NonProperStrand	1	chr5	107904553	107904646	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-inf
chr17	39848175	39848249	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	84463923	84463987	protein_coding	Ctnnd1	intron	ENSMUSG00000034101	ProperStrand	15	1	-3.9151
chr12	110533856	110533907	LTR	ORR1B1-int	MaLR	chr12ORR1B1-int110533668	ProperStrand	12	chr7	72231366	72231466	protein_coding	Fam189a1	intron	ENSMUSG00000030518	ProperStrand	57	1	-15.4262
chr4	48065421	48065511	protein_coding	Nr4a3	intron	ENSMUSG00000028341	NonProperStrand	1	chr4	48146112	48146212	protein_coding	Stx17	intron	ENSMUSG00000061455	NonProperStrand	9	1	-inf
chr4	107016858	107016918	protein_coding-noncoding	Yipf1	utr5	ENSMUSG00000057375	ProperStrand	17	chr4	107009982	107010023	protein_coding	Yipf1	intron	ENSMUSG00000057375	ProperStrand	174	1	-12.4476
chr9	118674951	118674997	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr15	101268472	101268548	protein_coding	Krt83	intron	ENSMUSG00000047641	NonProperStrand	30	1	-7.3498
chr4	34832519	34832571	SINE	B3	B2	chr4B334832392	NonProperStrand	1	chr2	130277720	130277767	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	1	-inf
chr3	67444834	67449691	LINE	L1Md_F2	L1	chr3L1Md_F267441472	NonProperStrand	2	chr12	78350926	78351033	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-13.3256
chr4	155308393	155308458	LTR	RLTR15	ERVK	chr4RLTR15155308222	NonProperStrand	1	chr3	88895319	88895394	protein_coding	Rusc1	exon	ENSMUSG00000041263	NonProperStrand	3	1	-inf
chr1	105991041	105991281	LINE	L1_Mur1	L1	chr1L1_Mur1105989797	ProperStrand	6	chr17	39847552	39847858	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-5.2646
chr1	126661013	126661103	LTR	MT2A	ERVL	chr1MT2A126661003	ProperStrand	1	chr1	126661279	126661379	Simple_repeat	(CATA)n	Simple_repeat	chr1(CATA)n126661296	ProperStrand	1	1	-inf
chr17	6963111	6963201	protein_coding	Ezr	intron	ENSMUSG00000052397	ProperStrand	3	chr17	8163644	8163744	protein_coding	Rsph3a	intron	ENSMUSG00000073471	ProperStrand	3	1	-20.2168
chr8	111171302	111172493	DNA	Charlie5	MER1_type	chr8Charlie5111172139	ProperStrand	1	chr17	39846494	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	129094191	129094217	antisense	Gm14024	.	ENSMUSG00000085485	ProperStrand	18	chr2	129095238	129095254	protein_coding	Ckap2l	intron	ENSMUSG00000048327	NonProperStrand	23	2	-20.6018
chr11	62604511	62604587	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr17	39846393	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	7	-5.2453
chr16	14315871	14315971	protein_coding	0610037P05Rik	intron	ENSMUSG00000022677	ProperStrand	7	chr16	14316154	14316244	sense_intronic	Gm15869	.	ENSMUSG00000087557	ProperStrand	2	1	-21.4874
chr4	84638471	84638503	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	chr13	97190547	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6660
chr16	18872486	18872586	protein_coding	Mrpl40	exon	ENSMUSG00000022706	ProperStrand	7	chr1	77448607	77448697	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	2	-inf
chr4	105219777	105219906	LTR	MTA_Mm	MaLR	chr4MTA_Mm105219798	ProperStrand	2	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-14.0145
chr1	135347032	135347132	SINE	B4A	B4	chr1B4A135347008	NonProperStrand	1	chr1	135346883	135346971	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n135346610	ProperStrand	1	1	-inf
chr4	124915663	124915730	lincRNA	1700041M05Rik	intron	ENSMUSG00000087010	ProperStrand	8	chr13	19102879	19102898	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	1	-17.5346
chr11	78182938	78183552	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr8	111273860	111273931	protein_coding	Zfhx3	intron	ENSMUSG00000038872	NonProperStrand	108	2	-15.6528
chr15	103244376	103244435	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-11.4320
chr9	122934817	122934907	LINE	L1MB7	L1	chr9L1MB7122934560	NonProperStrand	1	chr9	122935085	122935185	SINE	B1_Mur1	Alu	chr9B1_Mur1122935066	NonProperStrand	1	1	-inf
chr17	39847298	39847415	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	168217732	168217754	SINE	B1_Mus2	Alu	chr2B1_Mus2168217676	NonProperStrand	1	1	-inf
chr8	41332066	41332139	LINE	L1Md_T	L1	chr8L1Md_T41331144	NonProperStrand	4	chr9	123461931	123461990	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr12	87168018	87168098	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	132	chr10	63326463	63326527	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-9.3359
chr16	32893527	32893604	protein_coding	Fyttd1	intron	ENSMUSG00000022800	ProperStrand	23	chr18	35553409	35554432	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-10.3512
chr16	4623441	4623495	protein_coding	Pam16	intron	ENSMUSG00000014301	ProperStrand	15	chr8	121593818	121593918	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	1	-13.8785
chr15	103163259	103163288	protein_coding	Zfp385a	intron	ENSMUSG00000000552	ProperStrand	9	chr7	112784782	112784821	protein_coding	Arfip2	exon	ENSMUSG00000030881	NonProperStrand	24	3	-inf
chr4	129201531	129201699	protein_coding-noncoding	Hdac1	utr3	ENSMUSG00000028800	NonProperStrand	5	chr4	129201518	129201898	protein_coding	Hdac1	exon	ENSMUSG00000028800	NonProperStrand	32	2	-20.2664
chr8	114744928	114745018	SINE	B2_Mm2	B2	chr8B2_Mm2114744815	NonProperStrand	1	chr8	114745057	114745157	SINE	B4	B4	chr8B4114744999	ProperStrand	1	1	-inf
chr13	21780041	21780097	LINE	L1Md_T	L1	chr13L1Md_T21779280	ProperStrand	36	chr3	94496510	94496556	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-13.0220
chr8	22588777	22593738	LINE	L1VL1	L1	chr8L1VL122591510	ProperStrand	1	chr7	12930794	12930841	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	1	-inf
chr4	37129723	37129783	LINE	L1_Mur1	L1	chr4L1_Mur137128972	NonProperStrand	1	chr17	39847641	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	84885757	84885828	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr11	84886194	84886249	pseudogene	Gm11440	.	ENSMUSG00000082917	NonProperStrand	2	1	-19.9034
chr1	189657731	189657831	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	103	chr9	113948384	113948474	protein_coding	Fbxl2	intron	ENSMUSG00000032507	NonProperStrand	56	1	-11.0754
chr3	74615290	74615390	LINE	Lx9	L1	chr3Lx974615257	NonProperStrand	1	chr3	74615177	74615267	LTR	MTC	MaLR	chr3MTC74614865	ProperStrand	1	1	-inf
chr17	39847778	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	87368229	87368245	protein_coding	N6amt1	utr3	ENSMUSG00000044442	NonProperStrand	2	1	-5.4040
chr9	59014725	59014825	LINE	L1MB7	L1	chr9L1MB759014484	ProperStrand	1	chr9	59015008	59015098	SINE	B3	B2	chr9B359014947	ProperStrand	1	1	-inf
chr5	146261000	146261057	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	83149688	83149710	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-3.4746
chr5	146236722	146236789	LTR	RLTR13D1	ERVK	chr5RLTR13D1146236314	ProperStrand	3	chr6	51482750	51482785	protein_coding	Snx10	intron	ENSMUSG00000038301	ProperStrand	60	1	-18.4556
chrX	79174247	79174268	LINE	L1M2	L1	chrXL1M279174113	NonProperStrand	3	chr15	99704852	99704975	protein_coding	Lima1	intron	ENSMUSG00000023022	NonProperStrand	16	3	-inf
chr15	82128024	82130091	protein_coding	Wbp2nl	intron	ENSMUSG00000022455	ProperStrand	9	chr13	97190561	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.9531
chr5	114852014	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr2	121704481	121704602	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-8.7775
chr16	35981615	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr14	64710052	64710104	protein_coding	Prss51	intron	ENSMUSG00000052099	ProperStrand	2	1	-17.3222
chr13	100730836	100730914	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	chr17	31651503	31651558	protein_coding	Wdr4	intron	ENSMUSG00000024037	ProperStrand	95	1	-11.7711
chrX	24008626	24008747	LINE	L1_Mus1	L1	chrXL1_Mus124005691	NonProperStrand	7	chr17	39847220	39847263	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr10	43265662	43265762	LTR	RLTR33	ERVK	chr10RLTR3343265142	ProperStrand	1	chr10	43223117	43223207	protein_coding	Bend3	intron	ENSMUSG00000038214	ProperStrand	31	1	-inf
chr4	55381090	55382498	protein_coding-noncoding	Rad23b	utr5	ENSMUSG00000028426	ProperStrand	5	chr5	138298535	138298815	protein_coding	Pilrb1	exon	ENSMUSG00000066684	NonProperStrand	29	2	-21.0111
chr11	97218525	97218547	SINE	PB1D10	Alu	chr11PB1D1097218473	NonProperStrand	1	chr11	97231956	97236076	protein_coding	Socs7	intron	ENSMUSG00000038485	NonProperStrand	32	1	-inf
chr7	24551622	24551688	LINE	L1_Mus1	L1	chr7L1_Mus124551409	NonProperStrand	1	chr7	24549143	24549214	LINE	Lx4A	L1	chr7Lx4A24548686	ProperStrand	1	1	-inf
chr5	146260994	146261029	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	10007898	10007943	protein_coding-noncoding	Usp14	utr3	ENSMUSG00000047879	ProperStrand	5	1	-10.1672
chr14	99869351	99869413	LINE	Lx9	L1	chr14Lx999868898	ProperStrand	2	chr14	21485213	21485305	protein_coding	Synpo2l	exon	ENSMUSG00000039376	NonProperStrand	44	1	-19.8653
chr17	39848124	39848171	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	29990965	29991022	protein_coding-noncoding	Tbc1d13	utr3	ENSMUSG00000039678	ProperStrand	3	1	-7.3534
chr18	61725344	61725433	protein_coding	Csnk1a1	intron	ENSMUSG00000024576	NonProperStrand	46	chr6	51528001	51528101	protein_coding	Snx10	intron	ENSMUSG00000038301	ProperStrand	60	2	-20.3005
chr1	30796293	30796391	LINE	Lx4B	L1	chr1Lx4B30795920	NonProperStrand	1	chr17	39846476	39846498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	167033646	167033738	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	chr2	20880030	20880122	protein_coding	Arhgap21	intron	ENSMUSG00000036591	ProperStrand	30	1	-14.0969
chr17	39846921	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	54421023	54421058	LTR	MTA_Mm-int	MaLR	chr9MTA_Mm-int54420414	NonProperStrand	1	1	-inf
chr13	31681439	31681495	LINE	L1MB7	L1	chr13L1MB731680855	NonProperStrand	1	chr13	31664121	31664219	lincRNA	1700018A04Rik	intron	ENSMUSG00000038408	ProperStrand	22	1	-inf
chr14	75847934	75848034	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr12	78350927	78351017	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-7.2740
chr12	41720962	41721062	LINE	L1M4	L1	chr12L1M441720944	ProperStrand	1	chr12	41721263	41721353	LTR	RLTR24	ERV1	chr12RLTR2441721077	NonProperStrand	1	1	-inf
chr17	39847183	39847256	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	46181653	46194687	protein_coding	Xpa	intron	ENSMUSG00000028329	ProperStrand	20	2	-3.2818
chr17	42265623	42265714	DNA	Tigger9b	MER2_type	chr17Tigger9b42265204	ProperStrand	1	chr17	42265950	42266050	LTR	MTD	MaLR	chr17MTD42265949	ProperStrand	1	1	-inf
chr15	85864008	85864075	protein_coding	Celsr1	exon	ENSMUSG00000016028	NonProperStrand	18	chr11	102538801	102538878	protein_coding	Gm1564	intron	ENSMUSG00000051455	NonProperStrand	16	1	-17.1722
chr2	166145584	166145684	LTR	MTA_Mm	MaLR	chr2MTA_Mm166145464	NonProperStrand	5	chr2	166146287	166146338	Simple_repeat	(TGGA)n	Simple_repeat	chr2(TGGA)n166146221	NonProperStrand	1	1	-inf
chr17	39848535	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	69124235	69124288	protein_coding	Cntrob	intron	ENSMUSG00000032782	NonProperStrand	3	1	-7.6307
chr13	49050642	49050722	protein_coding	Fam120a	intron	ENSMUSG00000038014	ProperStrand	3	chr16	11572832	11572908	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-15.4188
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr19	16279833	16279944	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	1	-8.3871
chr15	62102738	62102885	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr9	43124750	43124766	protein_coding	Trim29	intron	ENSMUSG00000032013	NonProperStrand	4	1	-11.8666
chr10	80853783	80854655	protein_coding-noncoding	Dohh	utr5	ENSMUSG00000078440	NonProperStrand	1	chr10	80852887	80852961	protein_coding	Dohh	intron	ENSMUSG00000078440	NonProperStrand	15	1	-inf
chr17	39845803	39845944	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr16	4497143	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	1	-3.5211
chr3	146484532	146484632	LTR	ORR1A0	MaLR	chr3ORR1A0146484292	ProperStrand	1	chr3	146484643	146484733	SINE	B1_Mur2	Alu	chr3B1_Mur2146484638	NonProperStrand	1	1	-inf
chr15	10603723	10603813	protein_coding	Rai14	intron	ENSMUSG00000022246	NonProperStrand	12	chr1	71604331	71604431	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	2	-inf
chr5	92906339	92906414	protein_coding	Scarb2	intron	ENSMUSG00000029426	NonProperStrand	20	chr1	131411101	131411186	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-11.3964
chr11	69667833	69667911	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr18	77760531	77760552	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-6.8183
chr16	18954540	18954582	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	chr1	153907353	153907446	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	NonProperStrand	52	1	-11.0928
chr13	69506478	69506589	LINE	Lx9	L1	chr13Lx969506506	NonProperStrand	1	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	96558765	96558869	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	chr2	41344451	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-10.7945
chr17	39847611	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	120842340	120842395	protein_coding	Ccndbp1	utr3	ENSMUSG00000023572	NonProperStrand	1	1	-inf
chr3	94582540	94582560	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	chr3	94531207	94531326	pseudogene	Gm15264	.	ENSMUSG00000081355	ProperStrand	9	1	-15.8784
chrX	13626266	13677603	LINE	Lx	L1	chrXLx13624849	ProperStrand	7	chr3	122443379	122443406	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-13.8446
chr1	53301164	53301254	protein_coding	Pms1	intron	ENSMUSG00000026098	ProperStrand	45	chr1	52902799	52902899	protein_coding	Hibch	intron	ENSMUSG00000041426	NonProperStrand	34	1	-13.7520
chr17	39846747	39846818	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	136443677	136443758	protein_coding	Ppp3ca	intron	ENSMUSG00000028161	NonProperStrand	5	1	-3.1907
chr17	31969814	31969904	SINE	B4A	B4	chr17B4A31969747	ProperStrand	1	chr17	31991231	31991331	protein_coding	Sik1	intron	ENSMUSG00000024042	ProperStrand	14	1	-inf
chr9	123461964	123462013	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	115743944	115743983	protein_coding	Uqcrh	intron	ENSMUSG00000063882	NonProperStrand	4	1	-6.3300
chr5	31916383	31966251	protein_coding-noncoding	Mrpl33	utr5	ENSMUSG00000029142	ProperStrand	11	chr5	31916290	31968357	protein_coding	Mrpl33	intron	ENSMUSG00000029142	ProperStrand	100	7	-inf
chr4	42909590	42909680	Low_complexity	GA-rich	Low_complexity	chr4GA-rich42909600	ProperStrand	1	chr4	42909749	42909849	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n42909745	ProperStrand	1	1	-inf
chr17	28460460	28460518	protein_coding	Fance	intron	ENSMUSG00000007570	NonProperStrand	14	chr17	27894655	27894703	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	NonProperStrand	106	1	-13.8403
chr17	39847611	39847646	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	10396846	10396891	Simple_repeat	(TA)n	Simple_repeat	chr17(TA)n10396826	ProperStrand	1	1	-inf
chr3	153603881	153603989	protein_coding	Acadm	intron	ENSMUSG00000062908	ProperStrand	41	chr17	8385965	8385981	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-14.7403
chr17	39846601	39846648	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	123374779	123374836	SINE	B2_Mm2	B2	chr4B2_Mm2123374773	ProperStrand	1	1	-inf
chr1	34179247	34179314	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr9	65640554	65640644	protein_coding	Zfp609	intron	ENSMUSG00000040524	NonProperStrand	165	1	-4.8092
chr15	95813757	95813847	LINE	Lx8	L1	chr15Lx895813767	ProperStrand	3	chr15	95813864	95813965	SINE	B2_Mm2	B2	chr15B2_Mm295813893	NonProperStrand	3	3	-inf
chr17	39847057	39847425	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr17	39847456	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	6	-inf
chr9	110343632	110343727	protein_coding	Klhl18	intron	ENSMUSG00000054792	NonProperStrand	31	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.9585
chr8	91495979	91496079	LTR	MLT1K	MaLR	chr8MLT1K91495949	NonProperStrand	1	chr8	91495885	91495975	Simple_repeat	(GGA)n	Simple_repeat	chr8(GGA)n91495727	ProperStrand	1	1	-inf
chr15	25777507	25777561	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	163	chr2	158356423	158356459	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-8.5633
chr11	75570503	75570603	protein_coding-noncoding	Ywhae	utr5	ENSMUSG00000020849	ProperStrand	1	chr11	75570039	75570129	protein_coding	Ywhae	intron	ENSMUSG00000020849	ProperStrand	38	1	-inf
chr12	54285273	54285373	LINE	L1MA9	L1	chr12L1MA954285198	NonProperStrand	1	chr12	54285130	54285220	LINE	L1Md_T	L1	chr12L1Md_T54284769	ProperStrand	1	1	-inf
chr17	39847346	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	134298950	134299073	SINE	B1_Mur2	Alu	chr1B1_Mur2134298930	NonProperStrand	1	1	-inf
chr17	39846435	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	76787271	76788545	protein_coding-noncoding	Adarb1	utr3	ENSMUSG00000020262	ProperStrand	18	3	-3.4595
chr3	75655499	75655598	LINE	L1Md_F2	L1	chr3L1Md_F275655191	ProperStrand	2	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	53300083	53300190	Other	RMER1A	Other	chr11RMER1A53299639	ProperStrand	43	chr6	29760141	29760158	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	NonProperStrand	6	1	-17.5879
chr14	29247275	29247365	protein_coding	Erc2	intron	ENSMUSG00000040640	NonProperStrand	19	chr9	73593418	73593518	protein_coding	Unc13c	intron	ENSMUSG00000062151	ProperStrand	9	1	-18.1720
chr4	63167549	63167730	LINE	Lx8	L1	chr4Lx863167545	ProperStrand	1	chr2	167481352	167481421	protein_coding	Gm20431	intron	ENSMUSG00000089739	ProperStrand	22	1	-inf
chr17	39846747	39846871	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	74342357	74342387	LTR	MTA_Mm-int	MaLR	chr4MTA_Mm-int74342246	NonProperStrand	1	1	-inf
chr13	9834305	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr11	50219467	50219530	protein_coding	Rufy1	intron	ENSMUSG00000020375	NonProperStrand	40	1	-9.9240
chrX	6634019	6634110	DNA	URR1A	MER1_type	chrXURR1A6633956	NonProperStrand	1	chr7	121143954	121143971	protein_coding	Spon1	intron	ENSMUSG00000038156	NonProperStrand	14	1	-inf
chr17	39847578	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	56995930	56996045	protein_coding	Acsbg2	intron	ENSMUSG00000024207	NonProperStrand	7	2	-4.7560
chr11	4033583	4033683	SINE	B3	B2	chr11B34033560	ProperStrand	2	chr11	4033775	4033865	SINE	PB1D10	Alu	chr11PB1D104033796	ProperStrand	2	2	-inf
chr1	34011577	34011710	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr5	44226583	44226601	protein_coding	Bst1	intron	ENSMUSG00000029082	NonProperStrand	11	1	-10.2319
chr4	9618829	9618868	Other	RMER1A	Other	chr4RMER1A9618073	NonProperStrand	2	chr4	9619981	9620010	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n9619967	NonProperStrand	1	1	-inf
chr16	35477188	35477260	protein_coding	Pdia5	intron	ENSMUSG00000022844	ProperStrand	150	chr8	95799369	95799458	protein_coding	Ces1f	intron	ENSMUSG00000031725	ProperStrand	45	1	-10.7630
chr1	89638093	89638172	LTR	MT2_Mm	ERVL	chr1MT2_Mm89638089	NonProperStrand	3	chr10	28148953	28149005	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	1	-16.5684
chr5	108067421	108067538	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	chr16	18437539	18437555	protein_coding	Txnrd2	intron	ENSMUSG00000075704	NonProperStrand	9	1	-14.9718
chr16	22152990	22153079	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	chr7	27244630	27244730	protein_coding	Nlrp4a	intron	ENSMUSG00000040601	ProperStrand	15	1	-12.7534
chr17	39847192	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	30069368	30069403	SINE	B2_Mm1a	B2	chr2B2_Mm1a30069318	NonProperStrand	6	1	-3.9545
chr17	39847209	39847267	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr13	91883733	91883750	protein_coding	Acot12	intron	ENSMUSG00000021620	NonProperStrand	1	1	-inf
chr1	92837903	92837993	protein_coding	Mlph	intron	ENSMUSG00000026303	ProperStrand	33	chr9	78480354	78480544	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-8.7067
chr15	59066622	59066693	LTR	RLTR26	ERVK	chr15RLTR2659066512	ProperStrand	1	chr15	59065564	59065603	SINE	B4	B4	chr15B459065504	NonProperStrand	1	1	-inf
chr4	107389603	107390276	lincRNA	1700047F07Rik	intron	ENSMUSG00000085549	ProperStrand	49	chr17	24177760	24177808	protein_coding	Prss27	intron	ENSMUSG00000050762	NonProperStrand	15	1	-15.2554
chr7	72304013	72304103	LTR	MTE2a-int	MaLR	chr7MTE2a-int72303157	NonProperStrand	1	chr7	72284268	72284368	protein_coding	Fam189a1	intron	ENSMUSG00000030518	ProperStrand	57	1	-inf
chr15	59004469	59004559	LINE	L2c	L2	chr15L2c59004489	ProperStrand	11	chr15	59004295	59004412	SINE	RSINE1	B4	chr15RSINE159004283	NonProperStrand	9	9	-inf
chr19	37166913	37166961	protein_coding	Cpeb3	intron	ENSMUSG00000039652	ProperStrand	70	chr5	114437376	114437438	protein_coding	Ssh1	intron	ENSMUSG00000042121	ProperStrand	15	1	-14.5395
chr3	98014207	98014307	LINE	L1ME3	L1	chr3L1ME398014225	ProperStrand	2	chr3	98014091	98014181	LTR	RMER10A	ERVL	chr3RMER10A98013768	ProperStrand	2	2	-inf
chr4	148495546	148495574	SINE	PB1	Alu	chr4PB1148495495	ProperStrand	2	chr4	148493835	148493930	protein_coding	Dffa	utr3	ENSMUSG00000028974	ProperStrand	24	2	-inf
chr13	9748032	9748132	protein_coding	Zmynd11	intron	ENSMUSG00000021156	ProperStrand	40	chr11	69649215	69649804	protein_coding	Nlgn2	intron	ENSMUSG00000051790	NonProperStrand	22	1	-14.8808
chr5	105745086	105745185	LINE	L1Md_F2	L1	chr5L1Md_F2105743833	NonProperStrand	34	chr11	75667922	75668012	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	1	-11.2387
chr2	173261527	173261656	DNA	MER113	MER1_type	chr2MER113173261531	ProperStrand	16	chr2	173261652	173261752	LINE	L1M4	L1	chr2L1M4173261667	NonProperStrand	17	16	-inf
chr3	137974169	137974229	SINE	B3	B2	chr3B3137974058	NonProperStrand	1	chr3	137976866	137976959	protein_coding	Adh6a	intron	ENSMUSG00000053054	NonProperStrand	10	1	-inf
chr9	61955439	61955455	LINE	L2	L2	chr9L261954998	ProperStrand	1	chr13	112578195	112578262	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr9	120130419	120130473	SINE	B4	B4	chr9B4120130322	NonProperStrand	37	chr15	58028428	58028520	protein_coding	Fbxo32	intron	ENSMUSG00000022358	ProperStrand	17	1	-15.5713
chr10	79705747	79705841	protein_coding-noncoding	Mum1	utr5	ENSMUSG00000020156	ProperStrand	14	chr3	31111688	31113409	protein_coding	Slc7a14	intron	ENSMUSG00000069072	NonProperStrand	43	1	-15.6614
chr1	37383234	37383284	protein_coding	Inpp4a	intron	ENSMUSG00000026113	ProperStrand	55	chr5	131709557	131709641	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	1	-8.9543
chr16	72998524	72998540	protein_coding	Robo1	intron	ENSMUSG00000022883	NonProperStrand	15	chr13	14121485	14121616	protein_coding	Tbce	intron	ENSMUSG00000039233	NonProperStrand	14	1	-17.7899
chr7	116228908	116228964	LTR	MTD	MaLR	chr7MTD116228745	ProperStrand	7	chr7	116229078	116229124	SINE	MIR	MIR	chr7MIR116229081	ProperStrand	1	1	-inf
chr17	39846272	39846789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	15949474	15949491	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	6	-8.6498
chr11	121218150	121218550	protein_coding	Rab40b	utr3	ENSMUSG00000025170	NonProperStrand	20	chr17	30528255	30528299	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-9.4550
chr14	101024031	101024131	LTR	MTE2b	MaLR	chr14MTE2b101024022	ProperStrand	1	chr14	101024239	101024329	LTR	RLTR1D	ERV1	chr14RLTR1D101024168	ProperStrand	1	1	-inf
chr15	64037355	64037433	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr6	5836710	5836756	protein_coding	Dync1i1	intron	ENSMUSG00000029757	ProperStrand	12	1	-11.9254
chr8	125457468	125457580	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	chr4	57896797	57896832	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	1	-6.5684
chr4	121164159	121164208	LINE	L1Md_T	L1	chr4L1Md_T121162645	ProperStrand	1	chr5	17776748	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-inf
chr8	120549478	120549520	SINE	B3A	B2	chr8B3A120549416	NonProperStrand	8	chr9	123461882	123461955	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr12	65099423	65101621	LINE	Lx6	L1	chr12Lx665100717	ProperStrand	2	chr17	39846352	39846452	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr2	13878886	13878907	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	12	chrX	20934268	20934393	LINE	L1_Mur2	L1	chrXL1_Mur220933564	ProperStrand	5	1	-inf
chr17	32878909	32879009	Simple_repeat	(CAAAG)n	Simple_repeat	chr17(CAAAG)n32878936	NonProperStrand	1	chr9	22423385	22423475	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	126	1	-inf
chr2	122364766	122364808	LINE	L1Md_F3	L1	chr2L1Md_F3122361717	ProperStrand	8	chr17	39847206	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chrX	104340598	104340624	LINE	Lx7	L1	chrXLx7104339922	NonProperStrand	2	chr14	65846543	65846628	protein_coding	Fzd3	intron	ENSMUSG00000007989	NonProperStrand	34	2	-inf
chr11	87426775	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr11	87466926	87466960	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-8.3478
chr6	3201473	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	48968730	48968809	antisense	Gm8619	.	ENSMUSG00000086889	ProperStrand	4	1	-8.3508
mmu-miR-6240	1	16	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	chr5	114682191	114682283	protein_coding	Acacb	intron	ENSMUSG00000042010	NonProperStrand	38	1	-14.5615
chr5	45382991	45383091	LINE	L1_Mus4	L1	chr5L1_Mus445382745	NonProperStrand	1	chr5	45383226	45383316	Low_complexity	GA-rich	Low_complexity	chr5GA-rich45383196	NonProperStrand	1	1	-inf
chr12	63381319	63381419	LINE	L1_Mur1	L1	chr12L1_Mur163380066	ProperStrand	1	chr12	91066546	91066636	protein_coding	Nrxn3	intron	ENSMUSG00000066392	ProperStrand	49	1	-inf
chr9	123462000	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	1	-3.1531
chr6	112928474	112928526	LINE	L1MA5	L1	chr6L1MA5112928361	NonProperStrand	3	chr17	39847659	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr19	51694591	51694691	LINE	Lx4A	L1	chr19Lx4A51693941	NonProperStrand	1	chr19	53667354	53667444	LINE	Lx	L1	chr19Lx53663552	ProperStrand	1	1	-inf
chr15	12856502	12856572	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	chr8	126590084	126590141	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.9375
chr16	22260612	22260647	protein_coding	Tra2b	intron	ENSMUSG00000022858	ProperStrand	57	chr7	139509419	139509454	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-8.2471
chr16	4693501	4693601	protein_coding-noncoding	Dnaja3	utr5	ENSMUSG00000004069	ProperStrand	1	chr2	132689436	132689526	protein_coding	Crls1	intron	ENSMUSG00000027357	ProperStrand	3	1	-inf
chr14	124799527	124799545	protein_coding	Fgf14	intron	ENSMUSG00000025551	ProperStrand	12	chr2	135123702	135123721	protein_coding	Plcb1	intron	ENSMUSG00000051177	ProperStrand	26	1	-17.0371
chr11	61573529	61573569	protein_coding	Prpsap2	intron	ENSMUSG00000020528	ProperStrand	74	chr2	90395137	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-9.3004
chr8	104426348	104426438	LINE	L1Md_F2	L1	chr8L1Md_F2104426373	NonProperStrand	3	chr8	104426195	104426295	LINE	L1_Mm	L1	chr8L1_Mm104425880	ProperStrand	7	3	-inf
chr2	25222880	25222978	LTR	MT2B	ERVL	chr2MT2B25222904	NonProperStrand	9	chr2	25223108	25223155	SINE	B3	B2	chr2B325223115	NonProperStrand	5	2	-inf
chrX	95625066	95625156	LINE	L1Md_T	L1	chrXL1Md_T95619915	ProperStrand	1	chr3	157261346	157261446	protein_coding	Ptger3	intron	ENSMUSG00000040016	ProperStrand	5	1	-inf
chr16	17928031	17928049	protein_coding	Slc25a1	intron	ENSMUSG00000003528	ProperStrand	7	chr8	72319862	72319937	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	1	-16.5751
chr4	129742170	129742240	protein_coding	Col16a1	intron	ENSMUSG00000040690	NonProperStrand	18	chr11	88444120	88444180	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	2	-13.8578
chr3	32510711	32510729	protein_coding	Gnb4	intron	ENSMUSG00000027669	ProperStrand	7	chr3	132749036	132749064	protein_coding	Gstcd	intron	ENSMUSG00000028018	NonProperStrand	33	1	-17.6959
chr3	133511837	133511891	LINE	MusHAL1	L1	chr3MusHAL1133511521	ProperStrand	5	chr6	124741223	124741286	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	1	-inf
chr1	151361006	151361190	LINE	Lx6	L1	chr1Lx6151360965	ProperStrand	3	chr1	151360009	151360099	LTR	IAPEz-int	ERVK	chr1IAPEz-int151353776	NonProperStrand	15	1	-21.4444
chr17	83781965	83788949	protein_coding	Eml4	intron	ENSMUSG00000032624	ProperStrand	63	chr13	97190562	97190606	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.0276
chr17	39848598	39848705	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	129105447	129105463	protein_coding	Zbtb8b	intron	ENSMUSG00000048485	NonProperStrand	2	1	-8.7208
chr3	65954125	65954215	protein_coding	Veph1	intron	ENSMUSG00000027831	ProperStrand	30	chr3	64073121	64073221	protein_coding	Vmn2r3	intron	ENSMUSG00000091572	ProperStrand	1	1	-inf
chr13	97087245	97087335	LINE	L1VL2	L1	chr13L1VL297086374	ProperStrand	3	chr13	97087349	97087449	LINE	L1VL4	L1	chr13L1VL497087327	NonProperStrand	5	1	-inf
chr7	84658692	84658748	SINE	B1_Mm	Alu	chr7B1_Mm84658683	NonProperStrand	2	chr1	85213648	85213716	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	NonProperStrand	16	2	-inf
chr7	80081206	80081307	LINE	L1_Mur3	L1	chr7L1_Mur380081080	NonProperStrand	3	chr7	80081372	80081482	LINE	Lx8	L1	chr7Lx880081334	ProperStrand	26	2	-inf
chr13	51672132	51672222	LINE	L1_Rod	L1	chr13L1_Rod51671096	NonProperStrand	1	chr5	123850769	123850869	protein_coding	Mlxip	intron	ENSMUSG00000038342	ProperStrand	25	1	-inf
chr10	80150281	80151691	protein_coding	Mob3a	intron	ENSMUSG00000003348	NonProperStrand	48	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.3500
chr2	121308332	121308348	LINE	Lx2	L1	chr2Lx2121307384	NonProperStrand	1	chr4	136506848	136506986	protein_coding	Epha8	intron	ENSMUSG00000028661	NonProperStrand	6	1	-inf
chr17	39846585	39846605	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	30070578	30070939	SINE	B1_Mus1	Alu	chr2B1_Mus130070858	NonProperStrand	4	1	-3.6552
chr8	77478237	77478312	SINE	B2_Mm1a	B2	chr8B2_Mm1a77478174	NonProperStrand	1	chr8	77478354	77478429	SINE	PB1D10	Alu	chr8PB1D1077478370	NonProperStrand	1	1	-inf
chr12	56780548	56833017	protein_coding	Ralgapa1	intron	ENSMUSG00000021027	NonProperStrand	8	chr12	56776840	56814036	protein_coding	Ralgapa1	intron	ENSMUSG00000021027	ProperStrand	4	2	-inf
chr17	39848124	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	19597919	19597990	protein_coding	Pex7	intron	ENSMUSG00000020003	NonProperStrand	1	1	-inf
chr7	137024582	137024722	LINE	L1_Rod	L1	chr7L1_Rod137024382	ProperStrand	4	chr17	39847513	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr5	42307266	42307284	LINE	Lx7	L1	chr5Lx742307182	ProperStrand	1	chr11	120470203	120470334	protein_coding	Npb	utr3	ENSMUSG00000044034	ProperStrand	1	1	-inf
chr4	106420259	106420392	protein_coding	Fam151a	exon	ENSMUSG00000034871	ProperStrand	9	chr14	20789019	20789045	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	1	-14.1542
chr17	39847341	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	51457431	51458648	SINE	MIRb	MIR	chr3MIRb51458579	ProperStrand	1	1	-inf
chr14	62883813	62883883	LINE	L1Md_T	L1	chr14L1Md_T62881554	ProperStrand	7	chr14	62849618	62849700	LTR	ORR1C1	MaLR	chr14ORR1C162849415	NonProperStrand	1	1	-inf
chr11	120465367	120465457	protein_coding-noncoding	Anapc11	utr5	ENSMUSG00000025135	NonProperStrand	1	chr8	73334529	73334629	protein_coding	Il12rb1	intron	ENSMUSG00000000791	NonProperStrand	44	1	-inf
chr9	115167162	115167232	protein_coding	Stt3b	intron	ENSMUSG00000032437	NonProperStrand	44	chr9	115061966	115067266	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	1	-10.3248
chr5	115646769	115646819	SINE	ID4_	ID	chr5ID4_115646741	NonProperStrand	1	chr19	5898611	5901246	protein_coding	Dpf2	exon	ENSMUSG00000024826	ProperStrand	23	1	-inf
chr5	37319085	37320284	protein_coding	Ppp2r2c	intron	ENSMUSG00000029120	NonProperStrand	30	chr9	72302804	72302850	protein_coding	Mns1	intron	ENSMUSG00000032221	ProperStrand	8	1	-17.5308
chr11	6403245	6403345	SINE	B2_Mm2	B2	chr11B2_Mm26403174	ProperStrand	1	chr11	6403835	6403925	SINE	B3A	B2	chr11B3A6403797	ProperStrand	2	1	-inf
chr7	49556967	49557041	LINE	L1VL4	L1	chr7L1VL449556960	ProperStrand	4	chr7	49548276	49548347	protein_coding	Vmn2r61	intron	ENSMUSG00000090967	ProperStrand	19	1	-20.0437
chr4	155220477	155220519	SINE	B1_Mus2	Alu	chr4B1_Mus2155220400	ProperStrand	1	chr9	20948072	20948181	protein_coding	Cdc37	intron	ENSMUSG00000019471	ProperStrand	31	1	-inf
chr11	94286597	94286885	protein_coding-noncoding	Cacna1g	utr3	ENSMUSG00000020866	ProperStrand	2	chr11	94286483	94287359	protein_coding	Cacna1g	intron	ENSMUSG00000020866	ProperStrand	40	2	-inf
chr5	122167040	122167121	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	chr1	128331519	128331543	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-7.8842
chr7	67219959	67219975	protein_coding	Snrpn	intron	ENSMUSG00000000948	NonProperStrand	8	chr13	76131352	76131413	protein_coding	Spata9	intron	ENSMUSG00000021590	ProperStrand	21	1	-18.3864
chr19	14463793	14463837	DNA	MER20	MER1_type	chr19MER2014463666	NonProperStrand	1	chr2	11784623	11784670	LINE	L1Md_A	L1	chr2L1Md_A11782642	ProperStrand	3	1	-inf
chr8	69979824	69979874	LINE	L1M3e	L1	chr8L1M3e69979161	NonProperStrand	1	chr8	69989439	69989521	LINE	L1Md_F	L1	chr8L1Md_F69986042	ProperStrand	4	1	-inf
chr12	71205984	71206091	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	chr6	97313901	97313927	protein_coding	Frmd4b	intron	ENSMUSG00000030064	ProperStrand	32	1	-13.1010
chr14	119159879	119159897	LINE	L1Md_F3	L1	chr14L1Md_F3119156775	ProperStrand	3	chr4	34557559	34557618	protein_coding	Orc3	intron	ENSMUSG00000040044	NonProperStrand	17	2	-20.2353
chr7	79700330	79700990	LTR	MERVL-int	ERVL	chr7MERVL-int79700182	ProperStrand	1	chr7	79700364	79701014	LTR	MT2_Mm	ERVL	chr7MT2_Mm79700745	ProperStrand	1	1	-inf
chr2	104559696	104559712	SINE	ID_B1	B4	chr2ID_B1104559567	ProperStrand	2	chr13	44869592	44869712	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr12	28711029	28711115	LINE	Lx2	L1	chr12Lx228710498	ProperStrand	8	chr12	28713392	28713468	LINE	Lx2	L1	chr12Lx228712712	NonProperStrand	6	3	-inf
chr14	40947865	40947920	LINE	L1Md_F2	L1	chr14L1Md_F240946932	NonProperStrand	3	chr17	39848097	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-7.3534
chr17	39847844	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	83338057	83338085	protein_coding	Ttll1	intron	ENSMUSG00000022442	ProperStrand	5	1	-3.2379
chr4	117155792	117155848	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	chr9	70555611	70555668	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-8.4548
chr5	134438997	134439087	SINE	B1_Mur4	Alu	chr5B1_Mur4134438934	ProperStrand	1	chr5	134438814	134438914	SINE	B3A	B2	chr5B3A134438775	NonProperStrand	1	1	-inf
chr6	49905399	49905489	LTR	ORR1B2	MaLR	chr6ORR1B249905395	ProperStrand	1	chr6	49905683	49905783	LTR	ORR1B2	MaLR	chr6ORR1B249905694	ProperStrand	2	1	-inf
chrX	150570504	150570569	LINE	Lx7	L1	chrXLx7150570510	ProperStrand	5	chrX	150569382	150569457	LTR	RMER17D2	ERVK	chrXRMER17D2150569071	NonProperStrand	6	3	-inf
chr11	69667837	69667912	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr17	70963680	70963765	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	2	-5.7019
chr9	47567710	47567831	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	chr7	121963219	121963236	protein_coding	Insc	intron	ENSMUSG00000048782	ProperStrand	5	1	-14.6817
chr13	44740592	44740668	LINE	L1MA5	L1	chr13L1MA544740576	NonProperStrand	2	chr13	44740160	44740246	SINE	PB1D10	Alu	chr13PB1D1044740130	ProperStrand	1	1	-inf
chr13	97488288	97488396	LINE	L1_Mur3	L1	chr13L1_Mur397488284	NonProperStrand	8	chr13	97488394	97488816	LTR	MT2C_Mm	ERVL	chr13MT2C_Mm97488373	NonProperStrand	22	8	-inf
chr16	23111319	23111377	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr15	73174203	73174291	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	1	-5.3556
chr12	111538545	111539453	LINE	L1ME4a	L1	chr12L1ME4a111539420	ProperStrand	1	chr13	112578222	112578297	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr3	70223674	70223774	LINE	L1Md_A	L1	chr3L1Md_A70223359	NonProperStrand	1	chr3	70224157	70224247	LTR	MTD-int	MaLR	chr3MTD-int70223782	ProperStrand	1	1	-inf
chr15	31593533	31593608	LINE	L1_Mus1	L1	chr15L1_Mus131593203	ProperStrand	4	chr2	5379272	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.1399
chr12	36092142	36092164	DNA	URR1A	MER1_type	chr12URR1A36091965	ProperStrand	1	chr2	127824054	127827343	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	1	-inf
chr15	81075652	81075742	LTR	MT2B	ERVL	chr15MT2B81075601	ProperStrand	2	chr15	81075535	81075636	Unknown	YREP_Mm	Unknown	chr15YREP_Mm81075538	NonProperStrand	2	2	-inf
chr15	59021915	59021979	Simple_repeat	(GA)n	Simple_repeat	chr15(GA)n59021913	NonProperStrand	3	chr9	44636758	44636829	protein_coding	Mll1	intron	ENSMUSG00000002028	NonProperStrand	44	1	-19.0086
chr3	87086571	87088174	LINE	L1Md_F2	L1	chr3L1Md_F287085258	NonProperStrand	11	chr17	39846453	39847041	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-5.3008
chr13	21430609	21430709	LTR	MT2B	ERVL	chr13MT2B21430494	NonProperStrand	1	chr13	21430214	21430304	SINE	ID_B1	B4	chr13ID_B121430169	NonProperStrand	1	1	-inf
chr11	96769840	96769930	protein_coding-noncoding	Cdk5rap3	utr3	ENSMUSG00000018669	NonProperStrand	1	chr11	96770205	96770305	protein_coding	Cdk5rap3	intron	ENSMUSG00000018669	NonProperStrand	1	1	-inf
chr12	98825562	98827397	LINE	L1M5	L1	chr12L1M598827289	ProperStrand	1	chr12	98828741	98830877	LINE	L1Md_T	L1	chr12L1Md_T98828392	NonProperStrand	1	1	-inf
chr2	174305299	174305399	DNA	URR1B	MER1_type	chr2URR1B174305157	ProperStrand	1	chr2	174305452	174305542	LTR	MT2A	ERVL	chr2MT2A174305385	ProperStrand	1	1	-inf
chr5	73147358	73147401	protein_coding	Tec	utr3	ENSMUSG00000029217	ProperStrand	63	chr9	108048188	108048292	protein_coding	Bsn	intron	ENSMUSG00000032589	NonProperStrand	80	1	-11.3457
chr1	9940614	9940704	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr2	80271383	80271483	protein_coding	Frzb	intron	ENSMUSG00000027004	NonProperStrand	2	1	-19.7109
chr15	64477611	64477631	LINE	Lx7	L1	chr15Lx764476705	ProperStrand	6	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-13.3877
chr5	48281971	48281988	LTR	RLTR16	ERVK	chr5RLTR1648281770	NonProperStrand	1	chr13	9386619	9386686	lincRNA	Gm17294	exon	ENSMUSG00000091506	ProperStrand	14	1	-inf
chr14	63622126	63622165	DNA	Ricksha	MuDR	chr14Ricksha63621972	NonProperStrand	2	chr14	63622292	63622321	SINE	B3A	B2	chr14B3A63622226	NonProperStrand	2	2	-inf
chr17	39847174	39847229	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	124920335	124921226	LTR	RLTR20C	ERVK	chr4RLTR20C124920285	ProperStrand	1	1	-inf
chr13	84262413	84262438	LTR	MER92B	ERV1	chr13MER92B84262371	ProperStrand	1	chr17	39847440	39847510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846580	39846716	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	48662552	48662568	protein_coding	Tmeff1	intron	ENSMUSG00000028347	NonProperStrand	4	1	-3.6552
chr9	50521851	50521879	protein_coding	Dixdc1	intron	ENSMUSG00000032064	ProperStrand	17	chr4	149025067	149025161	protein_coding	Pik3cd	intron	ENSMUSG00000039936	ProperStrand	144	1	-12.8267
chr17	39847844	39847896	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	59758892	59758991	protein_coding	1700129C05Rik	intron	ENSMUSG00000021977	ProperStrand	1	1	-inf
chr3	7971394	7971437	LINE	Lx	L1	chr3Lx7971330	ProperStrand	2	chr17	66147024	66147096	protein_coding	Ppp4r1	intron	ENSMUSG00000061950	ProperStrand	30	2	-inf
chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	27	chr7	97018545	97018659	protein_coding	Ccdc81	intron	ENSMUSG00000039391	NonProperStrand	12	1	-16.9193
chr3	8958185	8958275	protein_coding-noncoding	Tpd52	utr3	ENSMUSG00000027506	ProperStrand	2	chr3	8958059	8958159	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	2	-inf
chr5	114851981	114852031	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr2	52919391	52919486	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	1	-7.1241
chr17	74717962	74718635	protein_coding	Dpy30	intron	ENSMUSG00000024067	NonProperStrand	11	chr9	123461840	123461907	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr11	58978252	58978342	LINE	L1MB3	L1	chr11L1MB358978051	NonProperStrand	1	chr11	58978369	58978469	SINE	B1_Mus2	Alu	chr11B1_Mus258978337	ProperStrand	1	1	-inf
chr2	168201823	168201843	Low_complexity	T-rich	Low_complexity	chr2T-rich168201807	NonProperStrand	1	chr10	62807287	62807385	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	1	-inf
chr4	138237695	138237785	LTR	MTD	MaLR	chr4MTD138237668	NonProperStrand	1	chr4	138237490	138237590	SINE	B4	B4	chr4B4138237510	ProperStrand	1	1	-inf
chr15	89428560	89428628	LINE	L1Md_F2	L1	chr15L1Md_F289428215	ProperStrand	2	chr17	39846750	39846808	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39847910	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	78256100	78256140	SINE	ID_B1	B4	chr11ID_B178256048	NonProperStrand	1	1	-inf
chr1	105846722	105846738	Simple_repeat	(TTTG)n	Simple_repeat	chr1(TTTG)n105846716	NonProperStrand	2	chr13	44869602	44869670	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr11	88644772	88644895	DNA	URR1A	MER1_type	chr11URR1A88644788	NonProperStrand	6	chr11	88644659	88644811	LINE	L1ME2	L1	chr11L1ME288644623	NonProperStrand	10	6	-inf
chr2	122010771	122010808	protein_coding	Patl2	intron	ENSMUSG00000027233	NonProperStrand	13	chr1	118307438	118307550	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	NonProperStrand	63	1	-15.0471
chrX	51017962	51018077	antisense	AW822252	.	ENSMUSG00000085998	ProperStrand	2	chr9	120959385	120959422	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-16.5855
chr10	7209736	7209826	LINE	L1_Mm	L1	chr10L1_Mm7209693	ProperStrand	2	chr10	7209617	7209717	LINE	L1_Mus1	L1	chr10L1_Mus17209175	ProperStrand	2	2	-inf
chr17	39846401	39846933	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	26182574	26184180	protein_coding	Rab11fip3	intron	ENSMUSG00000037098	ProperStrand	10	2	-3.6091
chr6	50565270	50565370	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm50565170	NonProperStrand	3	chr6	50565373	50565569	SINE	B1_Mus1	Alu	chr6B1_Mus150565510	ProperStrand	4	1	-inf
chr2	75663642	75663663	Simple_repeat	(TTTTA)n	Simple_repeat	chr2(TTTTA)n75663637	ProperStrand	11	chr2	49538269	49538355	protein_coding	Kif5c	intron	ENSMUSG00000026764	ProperStrand	25	1	-17.2759
chr18	60235089	60235190	LINE	L1_Mur3	L1	chr18L1_Mur360234117	NonProperStrand	1	chr18	60235224	60235314	LINE	L1_Mur3	L1	chr18L1_Mur360235214	NonProperStrand	1	1	-inf
chr14	63489092	63489118	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.8472
chr8	79587683	79587727	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	chr13	44869632	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.4267
chr5	130059928	130059989	protein_coding	Sfswap	intron	ENSMUSG00000029439	ProperStrand	15	chr3	108554669	108554747	protein_coding	Aknad1	exon	ENSMUSG00000049565	NonProperStrand	220	1	-12.2364
chr14	65572268	65586607	protein_coding	Ints9	intron	ENSMUSG00000021975	NonProperStrand	30	chr9	123461835	123461935	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-4.1898
chr4	139282092	139282192	Other	RMER1B	Other	chr4RMER1B139282001	NonProperStrand	4	chr3	129558204	129558296	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	4	-inf
chr13	114070278	114070378	LINE	L1Md_T	L1	chr13L1Md_T114070289	NonProperStrand	45	chr13	114070168	114070258	LTR	IAPLTR1a_Mm	ERVK	chr13IAPLTR1a_Mm114069937	ProperStrand	2	1	-19.9197
chr17	39847440	39847547	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	30751542	30751569	SINE	B1_Mus2	Alu	chr17B1_Mus230751470	NonProperStrand	1	1	-inf
chr7	16786905	16789785	protein_coding	Dhx34	intron	ENSMUSG00000006019	ProperStrand	1	chr16	5021760	5021825	protein_coding	Glyr1	intron	ENSMUSG00000022536	ProperStrand	66	1	-inf
chr6	122729754	122729861	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr3	105955933	105955973	protein_coding	Chi3l3	intron	ENSMUSG00000040809	ProperStrand	17	1	-11.5680
chr17	39847257	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	110091807	110091825	Simple_repeat	(CCCTAG)n	Simple_repeat	chr5(CCCTAG)n110091692	NonProperStrand	1	1	-inf
chr17	39847804	39847847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	102165478	102166889	LTR	MLT1A0	MaLR	chr3MLT1A0102166786	NonProperStrand	1	1	-inf
chr9	15240654	15240744	LTR	RMER16-int	ERVK	chr9RMER16-int15240478	ProperStrand	1	chr9	15240740	15240841	SINE	B1_Mm	Alu	chr9B1_Mm15240740	NonProperStrand	1	1	-inf
chr5	146261266	146261348	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr15	47539993	47540119	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	4	-18.2062
chr5	53652693	53652729	LINE	L4	RTE	chr5L453652632	NonProperStrand	1	chr17	39847733	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr11	35972265	35972305	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-6.9690
chr9	47701550	47701574	LTR	MLT1A0	MaLR	chr9MLT1A047701534	ProperStrand	1	chr4	145689353	145689429	protein_coding	Gm13247	intron	ENSMUSG00000056300	NonProperStrand	8	1	-inf
chr1	189126292	189126310	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	chr7	141045134	141045274	protein_coding	Fank1	intron	ENSMUSG00000053111	NonProperStrand	11	1	-16.5141
chr2	31974451	31974541	LTR	IAPEz-int	ERVK	chr2IAPEz-int31974277	ProperStrand	3	chr2	31974592	31976583	Low_complexity	GA-rich	Low_complexity	chr2GA-rich31976315	ProperStrand	1	1	-inf
chr11	50321333	50321389	LTR	MLT1A1	MaLR	chr11MLT1A150320964	NonProperStrand	1	chr17	39847428	39847523	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	116521308	116521329	protein_coding	Stk33	intron	ENSMUSG00000031027	NonProperStrand	13	chr16	84817996	84818049	protein_coding	Jam2	intron	ENSMUSG00000053062	ProperStrand	120	1	-13.7516
chr12	91676506	91676581	LINE	L1Md_T	L1	chr12L1Md_T91675837	NonProperStrand	1	chr12	91677253	91677311	LINE	L1Md_T	L1	chr12L1Md_T91676972	NonProperStrand	1	1	-inf
chr4	74377692	74377783	LINE	L1_Mur1	L1	chr4L1_Mur174376957	NonProperStrand	3	chr17	39847531	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	34029874	34029974	LTR	RLTR42-int	ERVK	chr17RLTR42-int34029634	ProperStrand	14	chr17	34028962	34029052	SINE	B2_Mm2	B2	chr17B2_Mm234028892	ProperStrand	11	11	-inf
chr13	44759922	44760012	SINE	B1F	Alu	chr13B1F44759864	ProperStrand	2	chr13	44760006	44760106	SINE	RSINE1	B4	chr13RSINE144759996	ProperStrand	2	2	-inf
chr5	146260995	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	44144881	44144937	protein_coding	Naa50	utr5	ENSMUSG00000022698	ProperStrand	41	1	-5.8075
chr14	73831883	73831973	LINE	L1M5	L1	chr14L1M573831716	NonProperStrand	1	chr14	73831989	73832089	SINE	ID_B1	B4	chr14ID_B173831985	ProperStrand	1	1	-inf
chr7	27196030	27196091	LTR	ETnERV-int	ERVK	chr7ETnERV-int27194611	ProperStrand	1	chr17	39843438	39843479	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chrX	12801871	12801912	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr1	64598959	64599037	protein_coding	Creb1	intron	ENSMUSG00000025958	ProperStrand	13	1	-15.4325
chr2	180709443	180709512	protein_coding	Arfgap1	intron	ENSMUSG00000027575	NonProperStrand	57	chr13	97190546	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.2220
chr5	20568476	20568495	LINE	Lx9	L1	chr5Lx920568137	NonProperStrand	1	chr2	59655104	59655223	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	1	-inf
chr13	6590838	6590872	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr4	94587282	94587315	protein_coding	4930579C15Rik	intron	ENSMUSG00000028575	ProperStrand	21	1	-10.0695
chr9	123461957	123462046	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	127106144	127121252	protein_coding	Stard7	intron	ENSMUSG00000027367	NonProperStrand	19	2	-5.4805
chr3	41437470	41437537	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	chr17	5327300	5327370	protein_coding	Arid1b	exon	ENSMUSG00000069729	ProperStrand	340	1	-5.8375
chr12	25043370	25043451	LTR	IAPEY3-int	ERVK	chr12IAPEY3-int25042287	ProperStrand	9	chr9	123461931	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr16	48592612	48612328	protein_coding	Morc1	intron	ENSMUSG00000022652	ProperStrand	96	chr1	155634658	155634780	protein_coding	Rgsl1	intron	ENSMUSG00000042641	NonProperStrand	24	1	-12.9335
chr17	39846656	39846873	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	11906032	11907326	protein_coding	Phf14	intron	ENSMUSG00000029629	NonProperStrand	12	2	-3.1058
chr10	48403432	48403532	LINE	L1Md_A	L1	chr10L1Md_A48397139	ProperStrand	2	chr10	48403709	48403799	LINE	L1_Mur2	L1	chr10L1_Mur248403725	NonProperStrand	1	1	-inf
chr17	39846427	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	102094702	102094765	SINE	ID_B1	B4	chr15ID_B1102094715	ProperStrand	5	1	-3.1907
chr12	105052860	105052888	LTR	RLTR13A	ERVK	chr12RLTR13A105052403	NonProperStrand	1	chr17	39846457	39846495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	123461822	123462183	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	17776743	17776794	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	6	-3.9000
chr15	81914987	81915004	protein_coding	Mei1	intron	ENSMUSG00000068117	ProperStrand	63	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.5301
chr17	26928813	26928905	protein_coding	Bnip1	intron	ENSMUSG00000024191	ProperStrand	26	chr9	70568850	70568912	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-12.9233
chr9	110281269	110281361	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr13	44869572	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	35	-20.3739
chr1	161035399	161035467	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr17	32304512	32304570	Simple_repeat	(CA)n	Simple_repeat	chr17(CA)n32304518	NonProperStrand	1	1	-inf
chrX	151815270	151815353	LINE	L1_Rod	L1	chrXL1_Rod151815038	NonProperStrand	1	chrX	151817429	151817502	LINE	L1_Rod	L1	chrXL1_Rod151817246	NonProperStrand	1	1	-inf
chr4	150582027	150582110	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr2	181068357	181068375	protein_coding	Rtel1	intron	ENSMUSG00000038685	NonProperStrand	15	1	-11.0353
chr18	34813455	34819783	LTR	RLTR4_MM-int	ERV1	chr18RLTR4_MM-int34813434	NonProperStrand	1	chr18	34819873	34822378	SINE	B3A	B2	chr18B3A34819858	ProperStrand	1	1	-inf
chr2	167343461	167343564	SINE	ID_B1	B4	chr2ID_B1167343406	ProperStrand	4	chr2	167340875	167340900	protein_coding	Rnf114	utr3	ENSMUSG00000006418	NonProperStrand	70	1	-17.4765
chr3	98060483	98060613	LTR	IAPLTR2_Mm	ERVK	chr3IAPLTR2_Mm98060244	NonProperStrand	1	chr7	133145155	133145174	protein_coding	Gsg1l	intron	ENSMUSG00000046182	NonProperStrand	16	1	-inf
chr7	19126406	19126426	LTR	RMER16-int	ERVK	chr7RMER16-int19126370	NonProperStrand	1	chr7	133088971	133089109	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr17	39846660	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	103066694	103066770	LTR	RMER20B	ERVK	chr3RMER20B103066573	ProperStrand	1	1	-inf
chr11	78688284	78688374	LINE	L2a	L2	chr11L2a78688008	ProperStrand	1	chr11	78688452	78688552	LTR	RMER4B	ERVK	chr11RMER4B78688475	NonProperStrand	1	1	-inf
chr2	53483039	53483139	LINE	L1Md_T	L1	chr2L1Md_T53482965	ProperStrand	1	chr2	53482785	53482875	LINE	L1_Mur2	L1	chr2L1_Mur253482741	ProperStrand	1	1	-inf
chr2	56584729	56584829	LINE	Lx4A	L1	chr2Lx4A56584373	NonProperStrand	1	chr2	56584894	56584984	LINE	Lx4A	L1	chr2Lx4A56584836	NonProperStrand	1	1	-inf
chr17	39843394	39843736	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr16	19883803	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	6	-5.0029
chr3	138802914	138803014	LTR	MTC-int	MaLR	chr3MTC-int138802883	ProperStrand	3	chr3	138802758	138802848	LTR	MTC	MaLR	chr3MTC138802496	ProperStrand	3	3	-inf
chr10	128451803	128451918	LTR	MTD	MaLR	chr10MTD128451663	NonProperStrand	1	chr10	128452344	128452382	LTR	MTE-int	MaLR	chr10MTE-int128452354	ProperStrand	1	1	-inf
chr11	69940086	69940154	LINE	L1_Mur3	L1	chr11L1_Mur369940089	NonProperStrand	1	chr17	39848511	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chr17	47178519	47178565	LTR	RMER6A	ERVK	chr17RMER6A47178389	ProperStrand	1	chr11	54066639	54066695	antisense	Gm12223	.	ENSMUSG00000085585	NonProperStrand	4	1	-inf
chr13	92296025	92296110	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	103	chr5	132231864	132231882	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-6.1385
chr10	117061302	117061375	LINE	L2	L2	chr10L2117061294	NonProperStrand	9	chr12	75505732	75505815	LTR	RMER4B	ERVK	chr12RMER4B75505604	ProperStrand	1	1	-inf
chr3	77141251	77141351	LINE	L1M2	L1	chr3L1M277141258	ProperStrand	1	chr3	77140866	77140956	LINE	Lx5	L1	chr3Lx577140533	ProperStrand	1	1	-inf
chr14	117011170	117011270	LINE	Lx9	L1	chr14Lx9117010997	NonProperStrand	1	chr14	117011428	117011518	LINE	Lx9	L1	chr14Lx9117011316	NonProperStrand	1	1	-inf
chr17	39847908	39847958	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	72558000	72558107	protein_coding	Retsat	utr3	ENSMUSG00000056666	ProperStrand	3	1	-4.3512
chr3	107664986	107665011	LTR	MLT1A0	MaLR	chr3MLT1A0107664868	NonProperStrand	2	chr9	123462092	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr12	24856698	24856717	LINE	L1MD2	L1	chr12L1MD224856604	NonProperStrand	1	chr17	39847217	39847246	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	49945426	49945526	protein_coding-noncoding	Tbc1d9b	utr5	ENSMUSG00000036644	NonProperStrand	1	chr11	49945735	49945825	protein_coding	Tbc1d9b	intron	ENSMUSG00000036644	NonProperStrand	2	1	-inf
chr13	114018758	114018795	LINE	L1_Mm	L1	chr13L1_Mm114018731	NonProperStrand	3	chr13	114015834	114015861	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-14.8536
chr3	63976293	63980160	LINE	L1Md_F3	L1	chr3L1Md_F363977790	NonProperStrand	3	chr17	39847703	39847800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-8.1061
chr17	24600370	24602097	LTR	BGLII_A	ERVK	chr17BGLII_A24600374	ProperStrand	11	chr2	102829379	102829446	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	2	-inf
chr11	29158134	29158224	LINE	Lx5	L1	chr11Lx529158157	ProperStrand	2	chr11	29157980	29158080	LTR	ORR1D2	MaLR	chr11ORR1D229157903	ProperStrand	2	2	-inf
chr9	77767419	77767493	protein_coding	Elovl5	intron	ENSMUSG00000032349	ProperStrand	59	chr12	109734261	109734335	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-7.8256
chr12	73180334	73180434	protein_coding	2810055F11Rik	intron	ENSMUSG00000019718	ProperStrand	1	chr12	73553004	73553094	protein_coding	Lrrc9	intron	ENSMUSG00000021090	ProperStrand	9	1	-inf
chr1	94432157	94432257	LTR	MTB_Mm-int	MaLR	chr1MTB_Mm-int94432172	ProperStrand	1	chr1	94431972	94432062	Low_complexity	CT-rich	Low_complexity	chr1CT-rich94431993	ProperStrand	1	1	-inf
chrX	12849571	12849629	LTR	RMER17C	ERVK	chrXRMER17C12849389	NonProperStrand	1	chr5	116417903	116417985	protein_coding	Cit	exon	ENSMUSG00000029516	NonProperStrand	17	1	-inf
chr7	143268812	143268912	LINE	L1_Mur3	L1	chr7L1_Mur3143268647	ProperStrand	2	chr7	143268921	143269011	LINE	L1_Mur3	L1	chr7L1_Mur3143268920	ProperStrand	3	2	-inf
chr13	21722748	21722834	LTR	IAPEz-int	ERVK	chr13IAPEz-int21722038	NonProperStrand	5	chr17	39847661	39847732	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr16	98063255	98063290	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	chr8	78025589	78025614	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-10.8863
chrX	132666293	132666383	LINE	Lx8	L1	chrXLx8132666283	NonProperStrand	1	chrX	132665803	132665903	LTR	MT2B	ERVL	chrXMT2B132665681	NonProperStrand	1	1	-inf
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	144912834	144912955	protein_coding	Lmtk2	intron	ENSMUSG00000038970	NonProperStrand	132	1	-3.5694
chr5	124023977	124024067	LTR	RMER17C	ERVK	chr5RMER17C124023722	ProperStrand	1	chr15	76175574	76175674	protein_coding	Cyc1	intron	ENSMUSG00000022551	NonProperStrand	79	1	-inf
chr13	78384128	78384218	LINE	L1_Mus2	L1	chr13L1_Mus278383231	NonProperStrand	1	chr13	78384246	78384346	LINE	Lx9	L1	chr13Lx978384220	NonProperStrand	1	1	-inf
chr18	84274383	84274484	LTR	MTB	MaLR	chr18MTB84274084	NonProperStrand	1	chr18	84307806	84307849	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-inf
chr8	80733782	80736704	LTR	RLTR28	ERVL	chr8RLTR2880733685	ProperStrand	4	chr4	146068130	146068230	protein_coding	Gm13051	intron	ENSMUSG00000066009	ProperStrand	9	2	-inf
chr13	104634200	104634231	protein_coding	Erbb2ip	intron	ENSMUSG00000021709	ProperStrand	54	chr16	46413696	46413804	protein_coding	Pvrl3	intron	ENSMUSG00000022656	ProperStrand	32	1	-13.5053
chr19	3445610	3445700	LTR	MTE2b	MaLR	chr19MTE2b3445574	NonProperStrand	1	chr19	3445389	3445489	LTR	RMER5	ERV1	chr19RMER53445357	ProperStrand	1	1	-inf
chr5	143104132	143104182	LINE	Lx8	L1	chr5Lx8143103737	NonProperStrand	2	chr5	143101159	143101205	SINE	PB1D10	Alu	chr5PB1D10143101134	NonProperStrand	1	1	-inf
chr17	39848486	39848539	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	45769302	45769342	LINE	L1_Mus2	L1	chr5L1_Mus245768016	ProperStrand	1	1	-inf
chr4	108585201	108585305	protein_coding	Rab3b	intron	ENSMUSG00000003411	ProperStrand	63	chr11	19969563	19969603	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	1	-9.6446
chr3	102962292	102962392	protein_coding-noncoding	Dennd2c	utr5	ENSMUSG00000007379	NonProperStrand	1	chr3	102962613	102962703	protein_coding	Dennd2c	intron	ENSMUSG00000007379	NonProperStrand	3	1	-inf
chr16	35981617	35981640	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr6	33384610	33384725	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-4.7330
chr7	80470722	80470852	lincRNA	A730056A06Rik	intron	ENSMUSG00000092033	ProperStrand	89	chr5	32663869	32663892	protein_coding	Plb1	intron	ENSMUSG00000029134	NonProperStrand	6	1	-16.0122
chr14	66988999	66989099	LINE	HAL1-3A_ME	L1	chr14HAL1-3A_ME66988859	NonProperStrand	2	chr14	66989151	66989241	LINE	HAL1-3A_ME	L1	chr14HAL1-3A_ME66989106	NonProperStrand	1	1	-inf
chr6	3201485	3201533	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	55409835	55409921	protein_coding	Glra1	intron	ENSMUSG00000000263	ProperStrand	26	1	-4.4507
chr18	45062101	45062201	LINE	Lx5	L1	chr18Lx545062117	ProperStrand	1	chr18	45061758	45061848	LTR	ORR1A1	MaLR	chr18ORR1A145061772	ProperStrand	1	1	-inf
chr2	22744852	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	146261240	146261270	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-6.1670
chr5	45421985	45422085	LINE	L1_Mus4	L1	chr5L1_Mus445421271	ProperStrand	1	chr5	78022112	78022202	SINE	B4	B4	chr5B478021887	ProperStrand	1	1	-inf
chr5	31201995	31202012	protein_coding	Agbl5	intron	ENSMUSG00000029165	NonProperStrand	37	chr9	110281293	110281309	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.5321
chr1	131632873	131632963	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	chr1	79614225	79614325	protein_coding	Ap1s3	intron	ENSMUSG00000054702	ProperStrand	24	1	-11.0235
chr17	39843675	39843710	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	53115379	53115476	Simple_repeat	(CAGAGA)n	Simple_repeat	chr2(CAGAGA)n53115352	ProperStrand	1	1	-inf
chr13	29378886	29378963	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr7	127513425	127513492	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	118	1	-6.6058
chr10	60170953	60170973	LTR	MLT1A0	MaLR	chr10MLT1A060170918	ProperStrand	1	chr10	60163873	60163919	Other	RMER1A	Other	chr10RMER1A60163268	NonProperStrand	2	1	-inf
chr2	103660095	103660154	LTR	RLTR28	ERVL	chr2RLTR28103660087	NonProperStrand	1	chr6	30153209	30153226	LTR	ORR1A4	MaLR	chr6ORR1A430153025	ProperStrand	1	1	-inf
chr8	117344170	117344263	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr11	12240853	12240905	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-3.2922
chr9	84109405	84109491	LINE	Lx3A	L1	chr9Lx3A84108717	NonProperStrand	1	chr13	76197923	76197966	protein_coding	Arsk	utr3	ENSMUSG00000021592	NonProperStrand	1	1	-inf
chr7	122020998	122021088	DNA	RCHARR1	MER1_type	chr7RCHARR1122020411	NonProperStrand	16	chr7	122012143	122020998	LINE	Lx4B	L1	chr7Lx4B122011956	NonProperStrand	9	3	-inf
chr3	69070201	69070291	SINE	B4	B4	chr3B469070193	ProperStrand	1	chr3	69070052	69070152	SINE	RSINE1	B4	chr3RSINE169070073	ProperStrand	1	1	-inf
chr15	85177751	85177783	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr17	84184259	84184336	protein_coding	Mta3	intron	ENSMUSG00000055817	NonProperStrand	65	1	-9.1428
chr10	19879401	19879430	protein_coding	Mtap7	intron	ENSMUSG00000019996	NonProperStrand	44	chr12	78350883	78351008	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.5090
chr17	39846915	39846972	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	58623851	58627876	LTR	IAPEz-int	ERVK	chr9IAPEz-int58626566	ProperStrand	1	1	-inf
chr11	102568077	102568103	LTR	ERVL-B4-int	ERVL	chr11ERVL-B4-int102568082	NonProperStrand	5	chr11	102567956	102568077	LTR	ORR1A2	MaLR	chr11ORR1A2102567754	ProperStrand	37	2	-inf
chr17	39848598	39848679	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	141409815	141410524	LTR	RodERV21-int	ERV1	chr4RodERV21-int141409154	NonProperStrand	1	1	-inf
chr15	62071781	62071850	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr5	30672564	30673015	protein_coding	Otof	intron	ENSMUSG00000062372	NonProperStrand	98	1	-5.2593
chr7	34186372	34189378	LINE	L1VL4	L1	chr7L1VL434186003	ProperStrand	1	chr17	39843691	39843780	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr3	75180785	75180804	LINE	L1Md_T	L1	chr3L1Md_T75176264	ProperStrand	1	chr17	39847864	39847956	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	34863640	34863699	LINE	L1Md_F2	L1	chr4L1Md_F234863523	ProperStrand	3	chr4	34863157	34863217	LTR	RMER15	ERVL	chr4RMER1534862841	NonProperStrand	2	2	-inf
chr11	3151481	3151527	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	73	chr1	190825807	190825892	protein_coding	Kctd3	intron	ENSMUSG00000026608	ProperStrand	35	2	-20.7606
chr9	65555089	65555106	protein_coding	Zfp609	intron	ENSMUSG00000040524	ProperStrand	12	chr12	79784284	79784378	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-10.1796
chr3	157954124	157954194	protein_coding	Lrrc7	intron	ENSMUSG00000028176	NonProperStrand	76	chr6	49161381	49161460	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	ProperStrand	101	1	-10.5006
chr5	45698407	45698534	LINE	L1Md_T	L1	chr5L1Md_T45696751	NonProperStrand	1	chr9	123461964	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	20323144	20323254	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr10	82955115	82955138	protein_coding	Aldh1l2	intron	ENSMUSG00000020256	ProperStrand	30	1	-10.1187
chr11	4767682	4767782	LTR	LTRIS_Mus	ERV1	chr11LTRIS_Mus4767194	ProperStrand	3	chr11	4767782	4767872	SINE	B1F	Alu	chr11B1F4767800	ProperStrand	7	1	-25.2264
chr3	73930700	73930790	LINE	Lx2B	L1	chr3Lx2B73930620	ProperStrand	1	chr3	73930464	73930564	LTR	RMER17B	ERVK	chr3RMER17B73929824	ProperStrand	1	1	-inf
chr17	39847440	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	39768294	39768326	protein_coding	Rfx8	intron	ENSMUSG00000057173	ProperStrand	1	1	-inf
chr17	39847989	39848037	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	155324813	155324920	protein_coding	Dhx9	intron	ENSMUSG00000042699	ProperStrand	2	1	-5.4040
chr7	99978538	99978628	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	chr11	88437697	88437797	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-3.8588
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr19	37270617	37270667	protein_coding	Cpeb3	intron	ENSMUSG00000039652	ProperStrand	70	1	-5.6682
chr8	40537002	40537053	LINE	L1MD1	L1	chr8L1MD140536963	ProperStrand	1	chr13	97190552	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr10	11192413	11192513	LTR	RLTR23	ERV1	chr10RLTR2311192319	ProperStrand	1	chr10	11192021	11192111	LTR	RLTR47_MM	ERV1	chr10RLTR47_MM11191776	NonProperStrand	1	1	-inf
chr8	120589025	120589043	LTR	MLT1E3	MaLR	chr8MLT1E3120588910	ProperStrand	1	chr8	120581742	120582145	SINE	RSINE1	B4	chr8RSINE1120581651	ProperStrand	1	1	-inf
chr10	61830726	61830760	protein_coding	Hk1	intron	ENSMUSG00000037012	NonProperStrand	16	chr10	61007818	61007918	protein_coding	Lrrc20	intron	ENSMUSG00000037151	NonProperStrand	48	1	-15.1615
chr1	87777139	87777177	LTR	IAPEY3-int	ERVK	chr1IAPEY3-int87772720	NonProperStrand	120	chr9	42442962	42442990	protein_coding	Grik4	intron	ENSMUSG00000032017	ProperStrand	153	1	-8.7550
chr17	39845877	39845918	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr5	122764123	122764234	protein_coding	Pptc7	intron	ENSMUSG00000038582	NonProperStrand	19	1	-4.0407
chr15	102490707	102490775	LTR	ORR1A2	MaLR	chr15ORR1A2102490563	ProperStrand	3	chr17	39846756	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr6	37887877	37887908	protein_coding	Trim24	intron	ENSMUSG00000029833	ProperStrand	33	chr8	27271800	27271885	protein_coding	Thap1	intron	ENSMUSG00000037214	ProperStrand	33	1	-14.4466
chr13	102966506	102966550	LINE	L1_Mus3	L1	chr13L1_Mus3102965451	ProperStrand	1	chr1	135151145	135151233	protein_coding	Plekha6	intron	ENSMUSG00000041757	ProperStrand	14	1	-inf
chr11	109011809	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	58150526	58150621	protein_coding	Sh3bp5l	intron	ENSMUSG00000013646	NonProperStrand	9	1	-9.9559
chr15	99193021	99193157	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	chr2	158549653	158549670	protein_coding	Ppp1r16b	intron	ENSMUSG00000037754	ProperStrand	9	1	-14.9331
chr11	4927084	4927132	protein_coding	Ap1b1	intron	ENSMUSG00000009090	ProperStrand	57	chr9	120955184	120955222	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-9.2342
chr10	116107258	116107274	LTR	ORR1A0	MaLR	chr10ORR1A0116107006	NonProperStrand	2	chr9	114527237	114527348	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-15.4636
chr14	37495079	37495169	LINE	L1M5	L1	chr14L1M537494757	ProperStrand	1	chr14	37495386	37495486	LINE	Lx9	L1	chr14Lx937495270	ProperStrand	1	1	-inf
chr11	20021059	20021149	LTR	ORR1B1	MaLR	chr11ORR1B120020820	NonProperStrand	5	chr11	20021171	20021271	SINE	ID_B1	B4	chr11ID_B120021151	ProperStrand	2	2	-inf
chr11	79722875	79722965	Low_complexity	AT_rich	Low_complexity	chr11AT_rich79722892	ProperStrand	5	chr11	79722999	79723099	SINE	B1_Mur4	Alu	chr11B1_Mur479722982	ProperStrand	5	5	-inf
chr2	39139288	39139353	LINE	Lx	L1	chr2Lx39136981	ProperStrand	1	chr17	39846766	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	59704846	59704879	protein_coding	Naa35	intron	ENSMUSG00000021555	NonProperStrand	10	chr7	88803413	88803431	protein_coding	Homer2	intron	ENSMUSG00000025813	ProperStrand	6	1	-22.0401
chr15	82179417	82179515	protein_coding	1500032L24Rik	utr3	ENSMUSG00000022452	ProperStrand	8	chr15	82175232	82175249	protein_coding	Fam109b	utr3	ENSMUSG00000049687	ProperStrand	22	1	-18.3940
chr19	7383063	7383079	protein_coding	Mark2	intron	ENSMUSG00000024969	NonProperStrand	7	chr11	85189926	85190006	protein_coding	Bcas3	intron	ENSMUSG00000059439	NonProperStrand	49	1	-16.9058
chr4	30955470	30955570	LINE	L1MD	L1	chr4L1MD30955465	NonProperStrand	1	chr4	30955264	30955354	LINE	Lx2	L1	chr4Lx230954745	ProperStrand	1	1	-inf
chr17	39843495	39843552	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	110106774	110106821	protein_coding	5430403G16Rik	intron	ENSMUSG00000072763	ProperStrand	34	1	-3.5863
chr7	132939750	132939820	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	ProperStrand	47	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.4533
chr10	128115010	128115061	protein_coding	Rab5b	utr3	ENSMUSG00000000711	NonProperStrand	89	chr17	84784825	84784878	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	1	-9.2139
chr11	116172776	116172853	LTR	MYSERV-int	ERVK	chr11MYSERV-int116172552	ProperStrand	1	chr17	39847611	39847678	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	160978165	160978264	LINE	L2	L2	chr2L2160977822	NonProperStrand	1	chr2	5379296	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr9	123461957	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	122925068	122925168	protein_coding	Synpo2	intron	ENSMUSG00000050315	NonProperStrand	14	2	-6.3946
chr19	23154464	23154517	SINE	B1_Mm	Alu	chr19B1_Mm23154444	NonProperStrand	3	chr19	23154808	23154904	Simple_repeat	(TG)n	Simple_repeat	chr19(TG)n23154765	ProperStrand	2	1	-20.2824
chr9	48447552	48447650	LTR	MTD	MaLR	chr9MTD48447564	ProperStrand	1	chr9	48447388	48447478	SINE	B4A	B4	chr9B4A48447289	NonProperStrand	1	1	-inf
chr17	46496949	46498690	LTR	MTB	MaLR	chr17MTB46498125	NonProperStrand	1	chr2	58459071	58462885	protein_coding	Upp2	intron	ENSMUSG00000026839	NonProperStrand	62	1	-inf
chr1	87776937	87777005	LTR	IAPEY3-int	ERVK	chr1IAPEY3-int87772720	NonProperStrand	120	chr11	35788542	35788605	protein_coding	Wwc1	intron	ENSMUSG00000018849	NonProperStrand	21	1	-12.7595
chr11	30124928	30124963	protein_coding	Spnb2	intron	ENSMUSG00000020315	ProperStrand	88	chr13	55114908	55114950	protein_coding	Hk3	exon	ENSMUSG00000025877	NonProperStrand	30	1	-12.6542
chr14	61213727	61213817	LINE	Lx4B	L1	chr14Lx4B61213305	NonProperStrand	1	chr14	61213912	61214012	Simple_repeat	(GAA)n	Simple_repeat	chr14(GAA)n61213872	ProperStrand	1	1	-inf
chr6	3201430	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	138169376	138169443	SINE	B3	B2	chr5B3138169393	ProperStrand	1	1	-inf
chrX	153238426	153238462	LINE	L1_Mur1	L1	chrXL1_Mur1153237544	NonProperStrand	2	chrX	153238482	153238538	LINE	L1_Mur1	L1	chrXL1_Mur1153238461	ProperStrand	1	1	-inf
chr10	14648465	14648565	LINE	L1Md_F2	L1	chr10L1Md_F214642728	NonProperStrand	2	chr10	14648569	14648659	LINE	L1Md_F2	L1	chr10L1Md_F214648538	NonProperStrand	2	2	-inf
chr7	141226097	141226175	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	chr7	3706751	3706827	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	64	1	-9.6452
chr17	17183949	17184049	LINE	Lx6	L1	chr17Lx617183031	NonProperStrand	4	chr17	17009583	17009673	LTR	IAPEY2_LTR	ERVK	chr17IAPEY2_LTR17009499	ProperStrand	2	2	-inf
chr11	87426842	87426884	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr5	140616873	140616971	protein_coding	Mad1l1	intron	ENSMUSG00000029554	ProperStrand	144	1	-10.0735
chr11	55503401	55503507	SINE	ID_B1	B4	chr11ID_B155503417	NonProperStrand	1	chr15	76070372	76070429	protein_coding	Parp10	intron	ENSMUSG00000063268	ProperStrand	64	1	-inf
chr11	72312024	72312124	protein_coding	Spns3	intron	ENSMUSG00000020798	NonProperStrand	6	chr5	22505180	22505270	protein_coding	Lhfpl3	intron	ENSMUSG00000058361	NonProperStrand	52	2	-inf
chr17	5411047	5411066	protein_coding	5730437N04Rik	utr3	ENSMUSG00000004945	ProperStrand	26	chr4	137484493	137484615	protein_coding	Ece1	intron	ENSMUSG00000057530	ProperStrand	325	1	-10.3279
chr17	39847216	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	123172214	123174464	protein_coding	P2rx4	intron	ENSMUSG00000029470	NonProperStrand	5	2	-7.5968
chr17	39846932	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	43028269	43028980	SINE	B3	B2	chr4B343028917	ProperStrand	1	1	-inf
chr8	33691886	33691936	LINE	L1Md_A	L1	chr8L1Md_A33685947	NonProperStrand	1	chr16	13115109	13115149	protein_coding	Ercc4	intron	ENSMUSG00000022545	ProperStrand	19	1	-inf
chr10	25232777	25232823	protein_coding	Epb4.1l2	utr3	ENSMUSG00000019978	NonProperStrand	62	chr17	46683277	46683331	protein_coding	Cul9	utr5	ENSMUSG00000040327	ProperStrand	54	1	-12.1692
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr6	124962635	124962682	protein_coding	Zfp384	intron	ENSMUSG00000038346	NonProperStrand	26	1	-13.3236
chr6	100647601	100647684	LINE	L1MC1	L1	chr6L1MC1100647471	ProperStrand	1	chr6	100647842	100647894	LINE	L1MC1	L1	chr6L1MC1100647824	ProperStrand	1	1	-inf
chr7	12930813	12930851	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr2	5379238	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0024
chr12	73306329	73306379	LINE	L1Md_T	L1	chr12L1Md_T73303972	ProperStrand	10	chr13	112578181	112578239	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-7.7767
chrX	43464198	43464288	LINE	L1Md_F2	L1	chrXL1Md_F243462343	NonProperStrand	1	chrX	43464957	43465057	LINE	L1Md_F2	L1	chrXL1Md_F243462343	ProperStrand	1	1	-inf
chr10	127520451	127520541	protein_coding	Atp5b	intron	ENSMUSG00000025393	NonProperStrand	26	chr10	127519695	127520054	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	148	8	-inf
chr10	81646855	81647161	antisense	Gm15608	.	ENSMUSG00000087481	ProperStrand	10	chr16	23111355	23111430	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-13.5757
chr17	70963742	70963781	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chrX	13156597	13156688	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-4.3309
chrX	144345681	144346721	LINE	L1Md_A	L1	chrXL1Md_A144345579	ProperStrand	9	chr17	34610897	34610943	protein_coding	Btnl4	intron	ENSMUSG00000058435	NonProperStrand	19	1	-18.0438
chr11	92205720	92205820	LINE	Lx8	L1	chr11Lx892205714	NonProperStrand	1	chr11	92205605	92205695	SINE	B1_Mus1	Alu	chr11B1_Mus192205568	ProperStrand	1	1	-inf
chr17	52663535	52663634	DNA	MER3	MER1_type	chr17MER352663549	NonProperStrand	1	chr17	39846464	39846503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	106856187	106856305	LINE	Lx8	L1	chr2Lx8106855740	ProperStrand	1	chr17	39846759	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	19245182	19245223	SINE	B3A	B2	chr3B3A19245117	ProperStrand	1	chr17	27605087	27605138	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-inf
chr3	32522810	32522910	LINE	L1Md_A	L1	chr3L1Md_A32522075	ProperStrand	1	chr3	30562441	30562531	protein_coding	Lrriq4	intron	ENSMUSG00000027703	ProperStrand	3	1	-inf
chr11	98535574	98535599	protein_coding	Gsdma	intron	ENSMUSG00000017204	ProperStrand	2	chr9	118674951	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr10	111490800	111490890	LTR	IAPLTR1_Mm	ERVK	chr10IAPLTR1_Mm111490569	ProperStrand	1	chr3	101432637	101432655	SINE	B3	B2	chr3B3101432557	ProperStrand	2	1	-inf
chr13	23285394	23285481	LTR	RMER16-int	ERVK	chr13RMER16-int23284356	ProperStrand	1	chr9	31122759	31122826	protein_coding-noncoding	Prdm10	utr5	ENSMUSG00000042496	NonProperStrand	9	1	-inf
chr6	3201521	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-4.4507
chr3	138844756	138844795	LINE	L1Md_F2	L1	chr3L1Md_F2138842907	ProperStrand	1	chr8	117399459	117399488	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-inf
chr1	5659343	5659443	LINE	Lx5	L1	chr1Lx55659254	NonProperStrand	1	chr1	5658950	5659040	LTR	RLTR20B1	ERVK	chr1RLTR20B15658833	NonProperStrand	1	1	-inf
chr6	3201473	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	148467739	148467762	protein_coding	Pex14	intron	ENSMUSG00000028975	NonProperStrand	28	1	-4.3080
chr8	40505729	40505763	LINE	L1Md_F2	L1	chr8L1Md_F240504618	NonProperStrand	3	chr1	180594757	180597353	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	1	-16.2646
chr8	103753078	103753099	LINE	L1Md_F3	L1	chr8L1Md_F3103751984	ProperStrand	1	chr17	39847183	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	123735991	123736081	SINE	B1_Mur3	Alu	chr4B1_Mur3123736012	ProperStrand	1	chr4	123735755	123735857	SINE	B2_Mm1a	B2	chr4B2_Mm1a123735744	NonProperStrand	2	1	-inf
chr2	22744886	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr14	75845640	75846262	LTR	MTB_Mm	MaLR	chr14MTB_Mm75846072	NonProperStrand	17	1	-9.3516
chr2	11759741	11759773	LINE	L1Md_F2	L1	chr2L1Md_F211754187	ProperStrand	2	chr17	39847440	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	29271429	29271503	SINE	MIRb	MIR	chr17MIRb29271402	NonProperStrand	1	chr15	62183962	62184012	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	1	-inf
chr11	23093223	23093241	SINE	B3	B2	chr11B323093126	NonProperStrand	2	chr2	68978843	68978934	protein_coding	Nostrin	intron	ENSMUSG00000034738	ProperStrand	25	1	-inf
chr9	123462035	123462077	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	180257671	180258002	protein_coding	Ntsr1	intron	ENSMUSG00000027568	ProperStrand	19	1	-3.1531
chr10	95289198	95289259	LINE	L1MB2	L1	chr10L1MB295289160	ProperStrand	3	chr2	32963313	32963384	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-15.2714
chrX	74229169	74229394	LINE	L1Md_F3	L1	chrXL1Md_F374228638	NonProperStrand	3	chr9	56313983	56314023	protein_coding	Hmg20a	intron	ENSMUSG00000032329	NonProperStrand	29	1	-19.5983
chr19	3591764	3591816	protein_coding	Lrp5	exon	ENSMUSG00000024913	ProperStrand	159	chr4	143126520	143126582	protein_coding	Gm13040	intron	ENSMUSG00000070616	NonProperStrand	46	1	-10.6021
chr15	25693022	25693049	protein_coding	Myo10	intron	ENSMUSG00000022272	ProperStrand	120	chr16	56018512	56022056	protein_coding	Pcnp	utr3	ENSMUSG00000071533	ProperStrand	35	1	-11.7188
chrX	47655082	47655182	LINE	L1_Mur2	L1	chrXL1_Mur247655024	NonProperStrand	1	chrX	47655496	47655586	LINE	L1_Mur2	L1	chrXL1_Mur247655275	NonProperStrand	1	1	-inf
chr9	123461989	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	134364911	134364930	protein_coding	Tmem57	intron	ENSMUSG00000028826	NonProperStrand	5	1	-5.8308
chr9	94549753	94549803	LTR	ORR1D2	MaLR	chr9ORR1D294549531	ProperStrand	1	chr8	123430050	123430090	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-inf
chr4	44012740	44012794	LINE	Lx7	L1	chr4Lx744012152	ProperStrand	13	chr13	44869573	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.5322
chrX	97077164	97077181	SINE	MIRc	MIR	chrXMIRc97077124	ProperStrand	5	chr9	123462079	123462143	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	4	-inf
chr17	70963679	70963786	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	140566903	140566950	protein_coding	Mfap2	intron	ENSMUSG00000060572	NonProperStrand	1	1	-inf
chr18	77512708	77512808	LTR	ORR1E	MaLR	chr18ORR1E77512713	ProperStrand	1	chr18	77511925	77512015	LTR	RLTR10	ERVK	chr18RLTR1077511876	NonProperStrand	1	1	-inf
chr5	146261265	146261338	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr13	44869579	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	39	-21.2206
chr8	70097607	70098082	LINE	L1_Mus2	L1	chr8L1_Mus270097768	ProperStrand	1	chr9	123462101	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	84847447	84847520	protein_coding	Gabpa	intron	ENSMUSG00000008976	ProperStrand	42	chr9	101100851	101100914	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	NonProperStrand	66	1	-12.5505
chr14	101601850	101601930	SINE	B4A	B4	chr14B4A101601643	NonProperStrand	1	chr9	123461802	123461848	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	86044503	86046776	LTR	MERVL-int	ERVL	chr10MERVL-int86044507	ProperStrand	3	chr10	86043004	86044499	LTR	MT2C_Mm	ERVL	chr10MT2C_Mm86044037	ProperStrand	3	2	-20.2273
chr9	31070662	31070722	LTR	RMER15	ERVL	chr9RMER1531070491	NonProperStrand	2	chr6	128409539	128409589	lincRNA	Gm10069	intron	ENSMUSG00000059659	NonProperStrand	13	1	-inf
chr12	69157756	69158675	LINE	L1M4b	L1	chr12L1M4b69157494	NonProperStrand	2	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	32818359	32818432	antisense	Gm15614	.	ENSMUSG00000085234	ProperStrand	28	chr5	32804750	32804797	protein_coding	Ppp1cb	intron	ENSMUSG00000014956	NonProperStrand	37	1	-14.5457
chr11	62604512	62604572	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr9	40804005	40804082	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-8.2512
chrX	37191081	37191140	LINE	L1_Mus1	L1	chrXL1_Mus137190443	ProperStrand	2	chr15	92509605	92509674	protein_coding	Pdzrn4	intron	ENSMUSG00000036218	ProperStrand	35	1	-19.6352
chr10	62598291	62598416	protein_coding	Mypn	intron	ENSMUSG00000020067	ProperStrand	87	chr8	124380309	124384201	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-6.1977
chr8	87832808	87832898	LINE	Lx7	L1	chr8Lx787832813	ProperStrand	1	chr8	122981008	122981110	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-inf
chr11	12293582	12293676	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr4	131900751	131900790	protein_coding	Rcc1	intron	ENSMUSG00000028896	NonProperStrand	30	1	-10.4450
chr3	86049043	86049085	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	chr13	97190552	97190604	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.5444
chr4	150369906	150370006	LTR	MT2B	ERVL	chr4MT2B150369878	NonProperStrand	1	chr4	150369812	150369902	SINE	B1_Mus2	Alu	chr4B1_Mus2150369834	NonProperStrand	1	1	-inf
chr1	9940616	9940706	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr18	6126081	6126181	protein_coding	Arhgap12	intron	ENSMUSG00000041225	ProperStrand	63	2	-19.5335
chr2	166915223	166915254	SINE	B1_Mus2	Alu	chr2B1_Mus2166915220	ProperStrand	1	chr2	166929794	166929866	protein_coding	Kcnb1	utr3	ENSMUSG00000050556	NonProperStrand	23	1	-inf
chr4	149166068	149166663	LTR	MLT1B	MaLR	chr4MLT1B149166548	ProperStrand	1	chr5	146260995	146261054	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr17	4082215	4082235	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr5	24990964	24991093	protein_coding	Mll3	intron	ENSMUSG00000038056	ProperStrand	134	1	-6.0703
chr17	39847160	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	116309529	116309552	protein_coding-noncoding	Akr1a1	utr3	ENSMUSG00000028692	NonProperStrand	5	2	-7.5968
chr3	57537277	57537377	LTR	RLTR25B	ERVK	chr3RLTR25B57537236	NonProperStrand	2	chr3	57537411	57537501	Simple_repeat	(TA)n	Simple_repeat	chr3(TA)n57537407	NonProperStrand	2	2	-inf
chr17	39846919	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	8798508	8798557	snoRNA	ENSMUSG00000064721_SNORD25	.	ENSMUSG00000064721	NonProperStrand	1	1	-inf
chr10	17124520	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr7	81103999	81104099	protein_coding	St8sia2	intron	ENSMUSG00000025789	NonProperStrand	37	1	-10.7826
chr17	39847552	39847596	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	125163450	125163519	SINE	B1_Mus1	Alu	chr6B1_Mus1125163467	NonProperStrand	2	1	-5.4040
chr2	156617000	156617100	LTR	MYSERV-int	ERVK	chr2MYSERV-int156616975	ProperStrand	5	chr2	156616862	156616952	SINE	B2_Mm1a	B2	chr2B2_Mm1a156616790	ProperStrand	2	2	-inf
chr11	100477189	100477255	protein_coding	Dnajc7	intron	ENSMUSG00000014195	ProperStrand	28	chr17	46672387	46672553	protein_coding	Cul9	intron	ENSMUSG00000040327	ProperStrand	54	1	-13.7778
chr16	17222212	17222240	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	11	chr9	3413183	3413201	protein_coding	Cwf19l2	intron	ENSMUSG00000025898	NonProperStrand	4	1	-inf
chr1	71578720	71578821	LINE	L1Md_T	L1	chr1L1Md_T71578627	ProperStrand	4	chr13	44869573	44869614	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.0813
chr13	34892118	34892149	LINE	L1M2	L1	chr13L1M234891883	NonProperStrand	1	chr17	39847277	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr19	32293253	32293343	protein_coding-noncoding	Sgms1	utr3	ENSMUSG00000040451	ProperStrand	2	chr19	32293132	32293232	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-17.5209
chr7	134640785	134640875	SINE	B1_Mus1	Alu	chr7B1_Mus1134640772	NonProperStrand	1	chr7	134611923	134612023	protein_coding	Prr14	intron	ENSMUSG00000030822	ProperStrand	1	1	-inf
chr10	77085292	77085382	protein_coding	Ube2g2	intron	ENSMUSG00000009293	NonProperStrand	37	chr10	77081152	77085293	protein_coding	Sumo3	intron	ENSMUSG00000020265	NonProperStrand	91	5	-inf
chr19	5801968	5802058	lincRNA	Malat1	exon	ENSMUSG00000092341	NonProperStrand	13	chr5	134636188	134636288	protein_coding	Wbscr16	intron	ENSMUSG00000061979	ProperStrand	39	1	-16.0324
chr1	93366729	93366819	LTR	MTB-int	MaLR	chr1MTB-int93366732	NonProperStrand	2	chr6	125189279	125189379	protein_coding-noncoding	Vamp1	utr5	ENSMUSG00000030337	NonProperStrand	8	1	-23.4058
chr10	75740076	75740124	protein_coding	Dip2a	intron	ENSMUSG00000020231	ProperStrand	98	chr2	161705792	161705812	protein_coding	Ptprt	intron	ENSMUSG00000053141	ProperStrand	25	1	-12.8094
chr19	8760663	8760763	SINE	B1F1	Alu	chr19B1F18760662	ProperStrand	3	chr19	8760533	8760623	SINE	B2_Mm2	B2	chr19B2_Mm28760415	ProperStrand	3	3	-inf
chr13	16778002	16778022	LINE	L1_Mus1	L1	chr13L1_Mus116777825	ProperStrand	1	chr7	80027632	80027715	LINE	L1Md_F2	L1	chr7L1Md_F280027465	NonProperStrand	30	1	-inf
chr5	26984491	26984539	LINE	L1_Mus1	L1	chr5L1_Mus126981073	NonProperStrand	4	chr14	21632394	21632457	SINE	RSINE1	B4	chr14RSINE121632400	ProperStrand	1	1	-inf
chr5	72839154	72839209	protein_coding	Corin	intron	ENSMUSG00000005220	ProperStrand	23	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr5	136535185	136535242	protein_coding	2310043J07Rik	intron	ENSMUSG00000006143	NonProperStrand	16	chr12	100130553	100130620	protein_coding	Eml5	intron	ENSMUSG00000051166	ProperStrand	43	1	-15.3901
chr17	66436231	66438249	protein_coding	Ndufv2	intron	ENSMUSG00000024099	ProperStrand	63	chr17	66385866	66436128	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	2	-14.6563
chr17	39847438	39847501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	104047067	104047140	protein_coding	Slc10a6	intron	ENSMUSG00000029321	NonProperStrand	4	2	-6.7714
chr15	102086319	102086419	protein_coding	Rarg	intron	ENSMUSG00000001288	NonProperStrand	44	chr9	22337932	22338022	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	1	-11.0343
chr4	116627344	116627435	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	chr4	116618899	116622785	pseudogene	Gm12998	.	ENSMUSG00000082207	ProperStrand	7	5	-inf
chr17	39847803	39847829	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	18066456	18066472	protein_coding-noncoding	Dgcr6	utr5	ENSMUSG00000003531	ProperStrand	2	1	-5.4040
chr17	24528474	24528550	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	24	chr3	139037817	139037883	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	NonProperStrand	81	1	-13.2751
chr16	65687347	65687364	LINE	L1VL2	L1	chr16L1VL265686175	ProperStrand	1	chr17	39846580	39846821	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	125492756	125492803	protein_coding	Fam101a	utr3	ENSMUSG00000037962	ProperStrand	5	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.6307
chrX	120700133	120700223	LINE	L1_Mus3	L1	chrXL1_Mus3120698214	ProperStrand	1	chrX	120700266	120700366	LINE	Lx3C	L1	chrXLx3C120700204	NonProperStrand	1	1	-inf
chr8	104063060	104063160	Other	RMER1A	Other	chr8RMER1A104063046	ProperStrand	1	chr8	104063337	104063427	Simple_repeat	(TTC)n	Simple_repeat	chr8(TTC)n104063177	NonProperStrand	1	1	-inf
chr2	30031024	30031124	protein_coding-noncoding	D2Wsu81e	utr3	ENSMUSG00000039660	NonProperStrand	3	chr2	30030726	30030816	protein_coding	D2Wsu81e	exon	ENSMUSG00000039660	NonProperStrand	9	2	-22.4834
chr8	87941164	87941224	protein_coding	4921524J17Rik	intron	ENSMUSG00000036934	ProperStrand	22	chr8	84230835	84230916	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-12.1123
chr17	39847775	39847840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	61521410	61521485	LTR	RMER3D-int	ERVK	chr8RMER3D-int61521072	ProperStrand	1	1	-inf
chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	23581935	23581967	SINE	B3A	B2	chr13B3A23581888	NonProperStrand	1	1	-inf
chr5	92958738	92958805	DNA	URR1B	MER1_type	chr5URR1B92958586	ProperStrand	1	chr5	92959422	92959484	LTR	RMER16	ERVK	chr5RMER1692959404	ProperStrand	1	1	-inf
chr14	79862190	79862224	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	30	chr5	124271414	124271532	protein_coding	Kntc1	utr3	ENSMUSG00000029414	NonProperStrand	67	2	-20.1338
chr13	97190561	97190583	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	173633520	173633618	pseudogene	Gm14371	.	ENSMUSG00000085938	ProperStrand	178	1	-3.0832
chr17	39846419	39846479	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	94024802	94024820	protein_coding	Hdac4	intron	ENSMUSG00000026313	ProperStrand	1	1	-inf
chr15	80154564	80154686	protein_coding	Cacna1i	intron	ENSMUSG00000022416	ProperStrand	114	chr16	94585447	94585479	protein_coding	Pigp	intron	ENSMUSG00000022940	NonProperStrand	42	1	-11.4526
chr14	116946569	116946609	LINE	Lx6	L1	chr14Lx6116946458	ProperStrand	1	chr17	39846677	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	43492784	43492801	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr5	100481580	100481681	protein_coding	Enoph1	intron	ENSMUSG00000029326	NonProperStrand	28	1	-8.6220
chr1	118944640	118944676	LTR	MT2B	ERVL	chr1MT2B118944610	NonProperStrand	2	chr1	118944007	118944054	LTR	ORR1A3	MaLR	chr1ORR1A3118943723	NonProperStrand	2	1	-19.8939
chr17	39846588	39846715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	122867890	122867911	LTR	MYSERV6-int	ERVK	chr2MYSERV6-int122866952	ProperStrand	1	1	-inf
chr17	39846750	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	128707850	128707950	Simple_repeat	(CAGAGA)n	Simple_repeat	chr7(CAGAGA)n128707870	NonProperStrand	2	2	-inf
chr8	111126847	111126961	SINE	B3A	B2	chr8B3A111126878	ProperStrand	1	chr8	111129009	111129038	SINE	B3A	B2	chr8B3A111128991	ProperStrand	1	1	-inf
chr9	42612045	42612116	protein_coding	Grik4	intron	ENSMUSG00000032017	ProperStrand	153	chr13	100128750	100128779	protein_coding	Mrps27	intron	ENSMUSG00000041632	ProperStrand	10	1	-13.8118
chr3	39435733	39435823	DNA	MER45B	Tip100	chr3MER45B39435687	ProperStrand	1	chr3	39435867	39435967	DNA	MER45B	Tip100	chr3MER45B39435865	ProperStrand	1	1	-inf
chr11	70692092	70692183	protein_coding	Rabep1	intron	ENSMUSG00000020817	NonProperStrand	24	chr11	70692934	70692987	pseudogene	Rpl23a-ps2	.	ENSMUSG00000081968	NonProperStrand	1	1	-inf
chr15	78902368	78902468	SINE	B1F1	Alu	chr15B1F178902397	ProperStrand	1	chr15	78902234	78902324	SINE	B2_Mm2	B2	chr15B2_Mm278902153	ProperStrand	1	1	-inf
chr7	98601631	98601721	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	chr7	98644681	98644781	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-5.0416
chr11	25987699	25987799	protein_coding	5730522E02Rik	intron	ENSMUSG00000032985	NonProperStrand	14	chr11	25987890	25987980	protein_coding	5730522E02Rik	intron	ENSMUSG00000032985	ProperStrand	42	1	-15.7158
chr11	74850303	74850346	antisense	Gm12333	.	ENSMUSG00000085765	ProperStrand	2	chr14	24493453	24495845	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-18.0128
chr17	27758455	27758480	protein_coding	Nudt3	intron	ENSMUSG00000024213	ProperStrand	62	chr11	119685284	119685390	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	231	1	-9.2548
chr16	13639500	13639569	protein_coding	Parn	intron	ENSMUSG00000022685	ProperStrand	65	chr8	72476283	72476342	protein_coding	Gatad2a	intron	ENSMUSG00000036180	NonProperStrand	41	1	-12.6313
chr9	110281285	110281334	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr5	122791614	122791718	protein_coding	Rad9b	intron	ENSMUSG00000038569	ProperStrand	44	1	-8.1837
chr1	192736104	192736122	SINE	B1F	Alu	chr1B1F192736096	ProperStrand	1	chr9	59675709	59678066	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr1	43744182	43744272	LINE	L1MA9	L1	chr1L1MA943744157	ProperStrand	1	chr1	43743815	43743915	LTR	ORR1D1	MaLR	chr1ORR1D143743589	NonProperStrand	1	1	-inf
chr17	39843945	39843996	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr13	8973311	8973393	protein_coding	Gtpbp4	intron	ENSMUSG00000021149	ProperStrand	25	1	-5.6825
chr7	100846656	100846791	LTR	ORR1B1	MaLR	chr7ORR1B1100846444	ProperStrand	1	chr3	27117866	27117882	protein_coding	Nceh1	intron	ENSMUSG00000027698	ProperStrand	4	1	-inf
chr1	89646436	89646536	LTR	RMER15	ERVL	chr1RMER1589646463	ProperStrand	1	chr7	140027781	140027871	protein_coding	Mettl10	intron	ENSMUSG00000030960	ProperStrand	18	1	-inf
chr2	93421851	93421867	LTR	MTE2a	MaLR	chr2MTE2a93421498	ProperStrand	6	chr4	43492777	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-11.8390
chr5	34659856	34659897	LINE	L1MD	L1	chr5L1MD34659769	NonProperStrand	1	chr17	39847477	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	149620589	149620679	protein_coding-noncoding	Eno1	utr5	ENSMUSG00000063524	ProperStrand	4	chr4	149620756	149620856	protein_coding	Eno1	exon	ENSMUSG00000063524	ProperStrand	12	3	-inf
chr18	37756060	37756160	LTR	MYSERV6-int	ERVK	chr18MYSERV6-int37755903	NonProperStrand	1	chr18	37756193	37756283	LTR	MYSERV6-int	ERVK	chr18MYSERV6-int37756196	NonProperStrand	1	1	-inf
chr17	39847505	39847533	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	67727286	67727385	Unknown	MurSatRep1	Unknown	chr14MurSatRep167727299	NonProperStrand	1	1	-inf
chr11	89002846	89002959	LTR	ORR1E	MaLR	chr11ORR1E89002823	NonProperStrand	6	chr18	24670566	24670617	protein_coding	Rprd1a	intron	ENSMUSG00000040446	NonProperStrand	8	3	-inf
chr5	123554399	123554438	protein_coding-noncoding	Rhof	utr3	ENSMUSG00000029449	ProperStrand	1	chr5	123558057	123558140	protein_coding	Rhof	intron	ENSMUSG00000029449	ProperStrand	10	1	-inf
chr17	39847844	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	74029358	74032370	protein_coding	Sgcb	intron	ENSMUSG00000029156	ProperStrand	2	1	-5.4040
chr17	39847636	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	143175051	143175175	SINE	B3	B2	chr6B3143175030	ProperStrand	2	1	-5.4040
chr4	135427443	135427543	protein_coding	Pnrc2	utr3	ENSMUSG00000028675	NonProperStrand	1	chr4	135422561	135422651	protein_coding	Srsf10	intron	ENSMUSG00000028676	ProperStrand	4	1	-inf
chr4	139348614	139348713	protein_coding	Pax7	intron	ENSMUSG00000028736	ProperStrand	24	chr15	35638317	35638372	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	3	-inf
chr11	86291764	86291854	LTR	ORR1A1	MaLR	chr11ORR1A186291706	NonProperStrand	1	chr11	86291111	86291211	SINE	B2_Mm2	B2	chr11B2_Mm286291032	ProperStrand	2	1	-inf
chr17	39847345	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	11967189	11967255	SINE	B4A	B4	chr7B4A11967123	NonProperStrand	1	1	-inf
chr17	39847888	39847928	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	128798083	128798189	protein_coding	Hpca	utr5	ENSMUSG00000028785	ProperStrand	2	1	-5.4040
chrY	938903	938993	LINE	L1Md_F2	L1	chrYL1Md_F2938568	NonProperStrand	1	chrY	814128	814228	LINE	L1Md_T	L1	chrYL1Md_T810894	ProperStrand	1	1	-inf
chr6	43660174	43660210	LINE	L1_Mur3	L1	chr6L1_Mur343660103	ProperStrand	2	chr6	43662702	43662760	LINE	Lx	L1	chr6Lx43662716	ProperStrand	1	1	-inf
chr17	39847611	39847677	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	7957533	7957608	protein_coding-noncoding	Fndc1	utr3	ENSMUSG00000071984	NonProperStrand	1	1	-inf
chr16	82886383	82886473	LINE	L1Md_F2	L1	chr16L1Md_F282886121	ProperStrand	1	chr16	82887850	82887950	LINE	L1Md_F2	L1	chr16L1Md_F282887553	NonProperStrand	1	1	-inf
chr8	79684390	79684478	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	chrX	48547725	48547767	protein_coding	Mbnl3	intron	ENSMUSG00000036109	ProperStrand	30	1	-12.2806
chr4	123298474	123298521	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	134	chr5	65460542	65468419	protein_coding	Tmem156	intron	ENSMUSG00000037913	ProperStrand	14	3	-20.6822
chr2	69870709	69870746	LTR	RMER19C	ERVK	chr2RMER19C69870527	NonProperStrand	2	chr7	16916708	16916772	protein_coding	Sae1	intron	ENSMUSG00000052833	ProperStrand	49	1	-19.9531
chr5	33533850	33533928	LINE	L1Md_F2	L1	chr5L1Md_F233533141	ProperStrand	50	chr10	77052234	77052308	protein_coding-noncoding	Pttg1ip	utr5	ENSMUSG00000009291	NonProperStrand	9	1	-16.2865
chr17	39846650	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	114671395	114671491	protein_coding	Cmtm7	intron	ENSMUSG00000032436	ProperStrand	11	2	-3.3422
chr19	23187872	23187926	LINE	L1Md_F2	L1	chr19L1Md_F223186849	ProperStrand	1	chr13	97190559	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39843335	39843494	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	2	-4.0631
chr2	25995808	25995884	lincRNA	C330006A16Rik	exon	ENSMUSG00000087679	ProperStrand	5	chr9	123462108	123462152	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr15	80798019	80798121	protein_coding	Adsl	exon	ENSMUSG00000022407	ProperStrand	36	chr15	80820744	80820781	protein_coding	Sgsm3	intron	ENSMUSG00000042303	ProperStrand	42	1	-13.7782
chr5	28073079	28073187	protein_coding	Paxip1	intron	ENSMUSG00000002221	NonProperStrand	65	chr4	18966592	18966613	protein_coding	Cnbd1	intron	ENSMUSG00000073991	NonProperStrand	6	1	-16.6792
chr7	79133866	79133916	SINE	B4	B4	chr7B479133639	ProperStrand	5	chr19	32220721	32220781	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-15.2395
chr7	16361789	16361879	LINE	L1Md_F	L1	chr7L1Md_F16361738	NonProperStrand	3	chr7	16361649	16361749	SINE	B1_Mur4	Alu	chr7B1_Mur416361585	NonProperStrand	2	2	-inf
chr13	40903702	40903793	LTR	RLTR47_MM	ERV1	chr13RLTR47_MM40903648	ProperStrand	1	chr13	40911304	40911370	LTR	RLTR47_MM	ERV1	chr13RLTR47_MM40911192	ProperStrand	1	1	-inf
chr1	71593823	71593855	LTR	MERVL_2A-int	ERVL	chr1MERVL_2A-int71592426	NonProperStrand	13	chr1	71612617	71613824	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	1	-14.5943
chr13	38053542	38053568	DNA	MER2	MER2_type	chr13MER238053526	NonProperStrand	2	chr7	29152981	29152997	protein_coding	Plekhg2	intron	ENSMUSG00000037552	ProperStrand	4	1	-22.1285
chr17	38452091	38452181	LTR	ORR1B1-int	MaLR	chr17ORR1B1-int38452072	ProperStrand	1	chr17	38451773	38451873	pseudogene	Olfr762-ps1	.	ENSMUSG00000092615	ProperStrand	1	1	-inf
chr3	26477351	26477451	LTR	IAPEz-int	ERVK	chr3IAPEz-int26471093	ProperStrand	1	chr3	26477547	26477637	LTR	IAPLTR1a_Mm	ERVK	chr3IAPLTR1a_Mm26477539	ProperStrand	1	1	-inf
chr4	34577970	34578023	protein_coding	Rars2	intron	ENSMUSG00000028292	NonProperStrand	40	chr10	52437810	52437911	protein_coding	Slc35f1	intron	ENSMUSG00000038602	ProperStrand	51	2	-inf
chr15	59019098	59019141	LINE	L3	CR1	chr15L359018986	NonProperStrand	1	chr15	59019201	59019228	SINE	MIRc	MIR	chr15MIRc59019185	NonProperStrand	1	1	-inf
chrX	42087036	42087156	LINE	L1Md_A	L1	chrXL1Md_A42085596	ProperStrand	3	chr2	13086224	13086246	protein_coding	Rsu1	intron	ENSMUSG00000026727	ProperStrand	40	1	-19.2571
chr7	142723284	142723384	LINE	L1MEb	L1	chr7L1MEb142723232	NonProperStrand	1	chr7	142723617	142723707	SINE	B3	B2	chr7B3142723510	ProperStrand	1	1	-inf
chr2	31478939	31480994	LINE	Lx8	L1	chr2Lx831478740	NonProperStrand	3	chr11	120134786	120134846	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	136	1	-16.7358
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr7	4509089	4509964	protein_coding	Ptprh	intron	ENSMUSG00000035429	ProperStrand	27	1	-11.4218
chr11	105835183	105835293	protein_coding	Ace	intron	ENSMUSG00000020681	ProperStrand	3	chr7	3298047	3298072	protein_coding	Myadm	utr3	ENSMUSG00000068566	ProperStrand	30	1	-19.4498
chr19	43753133	43753151	SINE	RSINE1	B4	chr19RSINE143753122	ProperStrand	1	chr9	123461821	123461904	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr16	50321726	50321858	protein_coding	Bbx	intron	ENSMUSG00000022641	ProperStrand	76	1	-9.8043
chr7	126151423	126151551	LTR	ORR1B1-int	MaLR	chr7ORR1B1-int126150289	ProperStrand	1	chr11	116238064	116238083	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	30	1	-inf
chr17	39847262	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	57527766	57527843	protein_coding	Smpdl3a	exon	ENSMUSG00000019872	NonProperStrand	3	1	-5.4882
chr2	118686718	118686770	LTR	RMER5	ERV1	chr2RMER5118686576	NonProperStrand	1	chr2	118686468	118686570	SINE	MIR	MIR	chr2MIR118686415	NonProperStrand	1	1	-inf
chr8	106170244	106170316	SINE	B4	B4	chr8B4106170176	ProperStrand	2	chr17	7238871	7238952	protein_coding	Gm1604b	intron	ENSMUSG00000073470	ProperStrand	137	1	-17.8276
chr1	179004629	179004658	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr5	93042490	93042520	protein_coding	Ccdc158	intron	ENSMUSG00000050050	NonProperStrand	47	1	-9.3034
chr6	19394691	19394791	LINE	Lx3A	L1	chr6Lx3A19391354	NonProperStrand	1	chr6	19395132	19395222	LINE	Lx5	L1	chr6Lx519394915	NonProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr17	24720552	24720643	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-3.6679
chr9	123461822	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	115474516	115490398	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	8	-3.3971
chr1	192995600	192995644	protein_coding	Atf3	intron	ENSMUSG00000026628	ProperStrand	4	chr16	17045273	17045384	protein_coding	Mapk1	utr3	ENSMUSG00000063358	ProperStrand	89	1	-16.9275
chr12	87268221	87268305	protein_coding	Ttll5	intron	ENSMUSG00000012609	ProperStrand	42	chr12	99923667	99923741	protein_coding	Ptpn21	intron	ENSMUSG00000021009	NonProperStrand	77	1	-12.2409
chr3	94884945	94885670	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	ProperStrand	13	chr9	22500544	22500591	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	126	1	-13.6511
chr13	94788919	94788983	LINE	L1Md_A	L1	chr13L1Md_A94784633	ProperStrand	7	chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr11	12367924	12368004	LTR	MLT1A	MaLR	chr11MLT1A12367842	NonProperStrand	1	chr7	57869462	57869481	protein_coding	Nell1	intron	ENSMUSG00000055409	NonProperStrand	17	1	-inf
chr11	120578498	120578526	protein_coding	Lrrc45	intron	ENSMUSG00000025145	NonProperStrand	47	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-12.5495
chr8	127521629	127521668	LTR	ORR1C1	MaLR	chr8ORR1C1127521567	ProperStrand	1	chr8	127521333	127521449	LTR	RMER19A	ERVK	chr8RMER19A127521022	NonProperStrand	1	1	-inf
chr2	5379271	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr1	170156961	170156977	protein_coding	Pbx1	intron	ENSMUSG00000052534	NonProperStrand	4	1	-10.1399
chr6	72418581	72418626	SINE	B1_Mus1	Alu	chr6B1_Mus172418543	ProperStrand	1	chr5	115490293	115490356	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-inf
chr7	109769655	109769672	LINE	L1Md_A	L1	chr7L1Md_A109768782	ProperStrand	1	chr18	4649227	4649293	protein_coding	9430020K01Rik	exon	ENSMUSG00000033960	ProperStrand	14	1	-inf
chr7	16282595	16282841	LINE	L1Md_F3	L1	chr7L1Md_F316280666	NonProperStrand	4	chr7	16284321	16284530	LINE	L1Md_F3	L1	chr7L1Md_F316284084	NonProperStrand	1	1	-inf
chr5	121205043	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr4	155168012	155168102	protein_coding	E230028L10Rik	intron	ENSMUSG00000078487	NonProperStrand	75	5	-21.3816
chr5	25021451	25021498	SINE	B1_Mur4	Alu	chr5B1_Mur425021391	ProperStrand	1	chr5	24989914	24990002	protein_coding	Mll3	intron	ENSMUSG00000038056	ProperStrand	134	1	-inf
chr17	39847210	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	34238378	34238481	SINE	ID_B1	B4	chr2ID_B134238375	ProperStrand	1	1	-inf
chr2	22744822	22744926	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	39847365	39848089	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	74	-5.4336
chr1	29950762	29950862	LINE	L1Md_T	L1	chr1L1Md_T29945809	ProperStrand	1	chr1	35235318	35235408	Other	RMER1B	Other	chr1RMER1B35235170	NonProperStrand	1	1	-inf
chr2	155373527	155373627	antisense	4930471I20Rik	.	ENSMUSG00000086529	ProperStrand	1	chr2	157813684	157813774	protein_coding	Tti1	intron	ENSMUSG00000027650	ProperStrand	1	1	-inf
chr4	118061010	118061084	protein_coding	Szt2	intron	ENSMUSG00000033253	ProperStrand	16	chr7	96443486	96443521	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-11.5849
chr15	88728561	88728614	protein_coding	Ttll8	intron	ENSMUSG00000022388	ProperStrand	47	chr1	172240176	172240229	protein_coding	Nos1ap	intron	ENSMUSG00000038473	ProperStrand	20	2	-inf
chrX	7937919	7938233	LINE	Lx3_Mus	L1	chrXLx3_Mus7937882	ProperStrand	1	chrX	7938394	7938484	LINE	Lx3_Mus	L1	chrXLx3_Mus7937986	NonProperStrand	3	1	-inf
chr16	91683705	91683753	protein_coding	Donson	intron	ENSMUSG00000022960	ProperStrand	4	chr13	44869628	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.0813
chr2	165405741	165405757	DNA	MER46C	MER2_type	chr2MER46C165405719	NonProperStrand	1	chr11	100619580	100619607	protein_coding	Kcnh4	intron	ENSMUSG00000035355	ProperStrand	18	1	-inf
chr5	69333107	69333206	SINE	B4A	B4	chr5B4A69332976	NonProperStrand	1	chr13	97190541	97190564	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr11	21105078	21105178	LTR	RLTR13D3	ERVK	chr11RLTR13D321105068	NonProperStrand	3	chr11	21104983	21105073	SINE	B1_Mus1	Alu	chr11B1_Mus121104921	NonProperStrand	3	3	-inf
chr7	12930820	12930849	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr1	39983846	39983969	protein_coding	Map4k4	intron	ENSMUSG00000026074	ProperStrand	105	1	-10.3198
chr14	64127083	64127183	protein_coding	Tdh	intron	ENSMUSG00000021953	ProperStrand	2	chr14	29168286	29168376	protein_coding	Erc2	intron	ENSMUSG00000040640	ProperStrand	22	1	-21.6660
chr3	83637625	83637725	LTR	MTE-int	MaLR	chr3MTE-int83637582	NonProperStrand	1	chr3	83637469	83637559	LTR	ORR1D2	MaLR	chr3ORR1D283637216	ProperStrand	1	1	-inf
chrX	157447449	157456024	LTR	MLT1B	MaLR	chrXMLT1B157454823	NonProperStrand	5	chrX	157456011	157460369	LTR	MLT1C	MaLR	chrXMLT1C157455866	ProperStrand	7	5	-inf
chr4	56805904	56805920	protein_coding	Ikbkap	intron	ENSMUSG00000028431	ProperStrand	109	chr5	121404379	121404458	protein_coding	Rph3a	intron	ENSMUSG00000029608	NonProperStrand	86	1	-10.0997
chr5	115489537	115489603	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr5	114851973	114852030	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-6.4571
chr7	34110203	34116647	LINE	L1Md_F2	L1	chr7L1Md_F234115044	ProperStrand	6	chr7	34110100	34110200	LINE	L1Md_F3	L1	chr7L1Md_F334109775	NonProperStrand	8	5	-inf
chr17	39846470	39846507	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	77682942	77683006	LTR	ORR1D1	MaLR	chr18ORR1D177682904	ProperStrand	1	1	-inf
chr8	114319740	114319840	protein_coding	Cfdp1	intron	ENSMUSG00000031954	NonProperStrand	5	chr8	114105313	114105403	protein_coding	Znrf1	intron	ENSMUSG00000033545	NonProperStrand	1	1	-inf
chr17	39846760	39846844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	116243889	116243955	SINE	MIRb	MIR	chr7MIRb116243760	NonProperStrand	3	3	-inf
chr1	80410224	80410324	DNA	URR1A	MER1_type	chr1URR1A80410207	NonProperStrand	1	chr1	80409852	80409942	DNA	URR1B	MER1_type	chr1URR1B80409729	ProperStrand	1	1	-inf
chr8	25793706	25793722	protein_coding	Adam3	intron	ENSMUSG00000031553	ProperStrand	67	chr1	43110855	43110884	protein_coding	Tgfbrap1	intron	ENSMUSG00000070939	NonProperStrand	25	1	-13.5748
chr1	151360766	151360948	LINE	Lx	L1	chr1Lx151360705	ProperStrand	2	chr1	151360983	151361167	LINE	Lx6	L1	chr1Lx6151360965	ProperStrand	3	2	-inf
chr2	29647232	29647288	protein_coding	Coq4	intron	ENSMUSG00000026798	ProperStrand	35	chr11	95308664	95308737	protein_coding	Spop	intron	ENSMUSG00000057522	NonProperStrand	27	1	-14.7277
chr16	6375881	6375971	LINE	L1Md_F2	L1	chr16L1Md_F26375896	ProperStrand	1	chr12	67667932	67668032	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr2	177903194	177903284	protein_coding	Phactr3	intron	ENSMUSG00000027525	NonProperStrand	33	chr5	8192771	8192871	protein_coding	Adam22	intron	ENSMUSG00000040537	ProperStrand	77	1	-12.7304
chr11	109011693	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	7	-11.0882
chr8	70909290	70909386	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	NonProperStrand	45	chr9	118674951	118674993	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.5396
chr9	108814561	108814591	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n108814475	ProperStrand	1	chr14	24244892	24244929	protein_coding	Kcnma1	exon	ENSMUSG00000063142	ProperStrand	191	1	-inf
chr14	55094995	55095092	protein_coding	Rem2	utr5	ENSMUSG00000022176	ProperStrand	3	chr3	30581375	30581393	protein_coding	Lrrc31	intron	ENSMUSG00000074653	ProperStrand	1	1	-inf
chr17	39843709	39843824	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr7	7135404	7136436	protein_coding	Zfp418	exon	ENSMUSG00000034538	ProperStrand	3	1	-9.1352
chr16	36102124	36102172	LTR	RLTR25A	ERVK	chr16RLTR25A36101917	ProperStrand	1	chr1	60478537	60478571	protein_coding	Abi2	intron	ENSMUSG00000026782	NonProperStrand	40	1	-inf
chr17	39847977	39848001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	85138709	85138828	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n85138735	ProperStrand	1	1	-inf
chr9	123461931	123462001	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	120955018	120955098	protein_coding	Lcmt2	intron	ENSMUSG00000074890	ProperStrand	6	1	-5.4370
chr17	39848140	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	181275944	181276051	protein_coding	Dnajc5	intron	ENSMUSG00000000826	NonProperStrand	9	1	-4.9272
chr5	45459845	45459935	LINE	Lx2	L1	chr5Lx245459563	NonProperStrand	1	chr5	45459933	45460033	Simple_repeat	(TA)n	Simple_repeat	chr5(TA)n45459943	ProperStrand	1	1	-inf
chr6	100657295	100657372	protein_coding-noncoding	Gxylt2	utr5	ENSMUSG00000030074	NonProperStrand	1	chr6	100658161	100658229	protein_coding	Gxylt2	intron	ENSMUSG00000030074	NonProperStrand	12	1	-inf
chr3	67087095	67087150	protein_coding	Rsrc1	intron	ENSMUSG00000034544	ProperStrand	37	chr12	8284135	8284189	protein_coding	1110057K04Rik	intron	ENSMUSG00000037669	ProperStrand	64	1	-12.8696
chr3	90252609	90252699	DNA	Charlie1a	MER1_type	chr3Charlie1a90252518	ProperStrand	1	chr3	90252688	90252788	SINE	B4	B4	chr3B490252646	ProperStrand	1	1	-inf
chr15	80236151	80246755	SINE	B4A	B4	chr15B4A80242613	NonProperStrand	1	chr5	121205642	121205847	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-inf
chr17	33666520	33669023	protein_coding	Adamts10	intron	ENSMUSG00000024299	NonProperStrand	24	chr13	44843409	44843459	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-10.6777
chr10	103151160	103151260	LTR	ORR1C1-int	MaLR	chr10ORR1C1-int103151051	ProperStrand	1	chr10	103150795	103150885	LTR	ORR1C1	MaLR	chr10ORR1C1103150751	ProperStrand	1	1	-inf
chr3	32658544	32658634	LINE	L1_Mur3	L1	chr3L1_Mur332658519	NonProperStrand	1	chr3	32658446	32658546	SINE	B1_Mur2	Alu	chr3B1_Mur232658378	NonProperStrand	1	1	-inf
chr17	25907469	25907569	LINE	L1_Mus3	L1	chr17L1_Mus325907405	ProperStrand	4	chr17	25907587	25907677	SINE	B1_Mm	Alu	chr17B1_Mm25907603	ProperStrand	4	4	-inf
chr13	29973864	29973909	LTR	IAPEz-int	ERVK	chr13IAPEz-int29972855	ProperStrand	39	chr13	114126696	114126731	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	1	-12.0326
chr9	122994720	122994779	protein_coding	Zdhhc3	intron	ENSMUSG00000025786	NonProperStrand	28	chr4	134468404	134470132	protein_coding	Tmem50a	intron	ENSMUSG00000028822	NonProperStrand	19	1	-15.9010
chrX	137421273	137421363	LTR	MURVY-LTR	ERV1	chrXMURVY-LTR137421099	ProperStrand	1	chr12	3842738	3842837	protein_coding	Dnmt3a	intron	ENSMUSG00000020661	NonProperStrand	4	1	-inf
chr4	108466181	108466271	DNA	MER63C	AcHobo	chr4MER63C108466158	NonProperStrand	1	chr4	108465933	108466033	SINE	B4A	B4	chr4B4A108465848	NonProperStrand	1	1	-inf
chr15	76389064	76389154	LTR	RLTR19	ERVK	chr15RLTR1976389051	NonProperStrand	1	chr15	76388831	76388931	SINE	B1_Mus1	Alu	chr15B1_Mus176388834	NonProperStrand	1	1	-inf
chr17	39846759	39846832	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	130676018	130676087	LTR	RLTR11A	ERVK	chr4RLTR11A130675860	ProperStrand	2	1	-5.3533
chr10	62880036	62880104	LTR	MTC	MaLR	chr10MTC62879784	NonProperStrand	17	chr10	62806533	62806567	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	1	-11.9067
chr3	88120548	88120591	protein_coding	Cct3	intron	ENSMUSG00000001416	ProperStrand	26	chr5	130233656	130233766	sense_intronic	Gm15903	.	ENSMUSG00000086916	ProperStrand	1	1	-inf
chr11	45981484	45981515	LINE	Lx5	L1	chr11Lx545981236	ProperStrand	2	chr6	88485714	88485831	LINE	L1_Mur3	L1	chr6L1_Mur388485684	NonProperStrand	20	2	-inf
chr6	36744442	36744458	protein_coding	Ptn	intron	ENSMUSG00000029838	NonProperStrand	5	chr9	110281316	110281338	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-12.7185
chr11	10739803	10739821	LINE	Lx9	L1	chr11Lx910738518	NonProperStrand	2	chr9	123461891	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr6	87845674	87845777	protein_coding-noncoding	Copg	utr5	ENSMUSG00000030058	NonProperStrand	26	chr9	40229101	40229139	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-9.7642
chr11	75494437	75494525	protein_coding	Crk	intron	ENSMUSG00000017776	ProperStrand	72	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.6131
chr11	73283351	73283424	LINE	L1Md_T	L1	chr11L1Md_T73283162	NonProperStrand	1	chr11	73282287	73282336	LINE	L1_Mus2	L1	chr11L1_Mus273281125	ProperStrand	1	1	-inf
chr6	65146844	65146934	LINE	L1Md_F2	L1	chr6L1Md_F265145761	NonProperStrand	1	chr6	65147114	65147214	LINE	L1Md_F2	L1	chr6L1Md_F265147086	NonProperStrand	1	1	-inf
chr5	145294437	145294464	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n145294334	ProperStrand	1	chr2	150242407	150242458	protein_coding	Zfp442	intron	ENSMUSG00000068130	NonProperStrand	31	1	-inf
chr9	47842225	47842287	LINE	Lx5	L1	chr9Lx547842125	ProperStrand	2	chr8	114510617	114510675	protein_coding	Adat1	intron	ENSMUSG00000031949	NonProperStrand	66	1	-18.9169
chr17	39846679	39846720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	69226571	69226587	protein_coding	Dhrs9	intron	ENSMUSG00000027068	ProperStrand	4	1	-3.6552
chr5	146261022	146261068	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	62294423	62294502	protein_coding	Pigl	intron	ENSMUSG00000014245	ProperStrand	32	1	-6.2985
chr4	48542218	48542266	SINE	B1_Mus2	Alu	chr4B1_Mus248542143	NonProperStrand	1	chr9	65636515	65636573	protein_coding	Zfp609	intron	ENSMUSG00000040524	NonProperStrand	165	1	-inf
chr13	23531145	23531202	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n23531153	ProperStrand	1	chr4	129525420	129525507	protein_coding	Ptp4a2	utr3	ENSMUSG00000028788	NonProperStrand	36	1	-inf
chr8	45248665	45248758	LINE	L1Md_F3	L1	chr8L1Md_F345243637	NonProperStrand	6	chr2	5379264	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr2	138786802	138786892	LTR	MER31A	ERV1	chr2MER31A138786776	ProperStrand	1	chr9	62820810	62820910	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-inf
chr2	71139080	71139180	protein_coding	Slc25a12	intron	ENSMUSG00000027010	ProperStrand	6	chr11	80530230	80530320	protein_coding	Myo1d	intron	ENSMUSG00000035441	ProperStrand	33	2	-inf
chr12	16011247	16011307	LTR	MTE2a	MaLR	chr12MTE2a16011157	ProperStrand	1	chr17	39846414	39846513	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr8	95788716	95788811	protein_coding	Ces1f	intron	ENSMUSG00000031725	ProperStrand	45	1	-10.0060
chr9	123462124	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr10	79017268	79017373	protein_coding	Mier2	utr5	ENSMUSG00000042570	ProperStrand	2	1	-8.0983
chr14	56918734	56918818	LINE	Lx8	L1	chr14Lx856918695	NonProperStrand	1	chr17	39848664	39848704	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chr9	44334939	44335026	DNA	MER81	AcHobo	chr9MER8144334943	ProperStrand	2	chr17	39847277	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr11	57700874	57700964	SINE	B1_Mus2	Alu	chr11B1_Mus257700881	NonProperStrand	1	chr11	57701055	57701155	SINE	B3A	B2	chr11B3A57701054	ProperStrand	1	1	-inf
chr9	123461889	123461950	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	132837970	132838063	protein_coding	D630013G24Rik	intron	ENSMUSG00000040969	NonProperStrand	19	1	-3.1531
chr5	146261170	146261229	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-4.7377
chr4	142193578	142193668	SINE	B4A	B4	chr4B4A142193597	ProperStrand	1	chr4	142193475	142193575	Simple_repeat	(TCTCTG)n	Simple_repeat	chr4(TCTCTG)n142193424	NonProperStrand	1	1	-inf
chr8	84911250	84911290	protein_coding	Il15	intron	ENSMUSG00000031712	NonProperStrand	64	chr9	110063298	110063409	protein_coding	Smarcc1	intron	ENSMUSG00000032481	ProperStrand	174	1	-9.7569
chr7	96244152	96244242	LINE	Lx6	L1	chr7Lx696243695	NonProperStrand	1	chr7	96244207	96244307	LINE	Lx6	L1	chr7Lx696244165	NonProperStrand	1	1	-inf
chr2	22744838	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	113578278	113578343	protein_coding	Gm4759	intron	ENSMUSG00000053541	NonProperStrand	6	1	-11.5505
chr6	3201467	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	38500693	38523425	protein_coding	Bmp6	intron	ENSMUSG00000039004	NonProperStrand	47	2	-5.7147
chr2	165306735	165306865	LINE	L1MB7	L1	chr2L1MB7165306643	ProperStrand	1	chr15	61987545	61987568	lincRNA	Pvt1	intron	ENSMUSG00000072566	NonProperStrand	20	1	-inf
chr17	39846758	39846821	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	90100707	90100789	SINE	B2_Mm2	B2	chr3B2_Mm290100646	NonProperStrand	1	1	-inf
chr17	39847801	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	107897064	107897097	LTR	RMER12	ERVK	chr4RMER12107896844	ProperStrand	2	1	-5.4040
chr19	3851620	3851642	processed_transcript	Gm16066	.	ENSMUSG00000082848	ProperStrand	2	chr9	118674951	118675009	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	180716963	180717044	protein_coding	Arfgap1	utr3	ENSMUSG00000027575	ProperStrand	8	1	-3.3803
chr5	146260994	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	68356021	68895853	protein_coding	March1	intron	ENSMUSG00000036469	ProperStrand	80	2	-7.4961
chr17	39847636	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	27415905	27416800	Low_complexity	GA-rich	Low_complexity	chr19GA-rich27416707	NonProperStrand	5	1	-3.2379
chr2	24972344	24972399	LTR	BGLII	ERVK	chr2BGLII24972332	ProperStrand	1	chr1	134973889	134973961	protein_coding	Pik3c2b	intron	ENSMUSG00000026447	ProperStrand	17	1	-inf
chr7	85163182	85163205	LINE	L1MB5	L1	chr7L1MB585163018	ProperStrand	1	chr7	107452395	107452513	protein_coding	P4ha3	intron	ENSMUSG00000051048	ProperStrand	15	1	-inf
chr1	6218983	6219011	protein_coding	Rb1cc1	intron	ENSMUSG00000025907	ProperStrand	13	chr13	97190545	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.1850
chr12	73353181	73353281	protein_coding	Rtn1	intron	ENSMUSG00000021087	NonProperStrand	36	chr5	142948895	142948984	protein_coding	C330006K01Rik	intron	ENSMUSG00000039623	ProperStrand	2	1	-20.3707
chr1	89514358	89514482	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int89514121	ProperStrand	16	chr1	89519611	89519642	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-10.7210
chr14	71526020	71526110	LTR	IAPEz-int	ERVK	chr14IAPEz-int71523691	ProperStrand	1	chr14	71526243	71526343	LTR	IAPLTR1a_Mm	ERVK	chr14IAPLTR1a_Mm71526167	ProperStrand	1	1	-inf
chr11	116573962	116574029	LTR	ORR1A1	MaLR	chr11ORR1A1116573805	ProperStrand	1	chr11	116570060	116570137	Simple_repeat	(GAAA)n	Simple_repeat	chr11(GAAA)n116570021	NonProperStrand	1	1	-inf
chr3	68549432	68549502	LTR	RMER15	ERVL	chr3RMER1568549307	ProperStrand	2	chr4	133679694	133679736	protein_coding	Ubxn11	intron	ENSMUSG00000012126	NonProperStrand	37	1	-21.5930
chr9	17987812	17987832	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr12	54696812	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-9.5000
chrX	150984912	150984996	LINE	L1_Mus3	L1	chrXL1_Mus3150983431	NonProperStrand	5	chr17	47659732	47659806	protein_coding	Ccnd3	intron	ENSMUSG00000034165	ProperStrand	70	1	-16.9014
chr2	37279910	37280000	SINE	B1_Mur4	Alu	chr2B1_Mur437279935	ProperStrand	1	chr2	37279387	37279487	SINE	B2_Mm1t	B2	chr2B2_Mm1t37279348	NonProperStrand	1	1	-inf
chr3	41607634	41607713	LINE	L1_Mus1	L1	chr3L1_Mus141607357	ProperStrand	15	chr14	65563255	65563297	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	2	-inf
chr13	63274515	63274605	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	chr1	84273213	84273313	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	1	-7.0543
chr17	39847575	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	59035996	59036108	LTR	LTR84a	ERVL	chr9LTR84a59035935	NonProperStrand	4	1	-3.7035
chr6	122493912	122494013	LINE	L1M2	L1	chr6L1M2122493928	ProperStrand	1	chr6	122493463	122493553	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n122493314	ProperStrand	1	1	-inf
chr2	169920545	169920645	LTR	MTE2a	MaLR	chr2MTE2a169920502	NonProperStrand	1	chr2	169920840	169920930	SINE	B1F1	Alu	chr2B1F1169920785	ProperStrand	1	1	-inf
chr11	17211375	17211408	LINE	L2b	L2	chr11L2b17211183	ProperStrand	2	chr17	39846022	39846083	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-9.0607
chr2	119535452	119535516	protein_coding	Rtf1	intron	ENSMUSG00000027304	NonProperStrand	3	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr8	70938975	70939065	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	NonProperStrand	45	chr8	70902301	70902401	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-11.1445
chr8	111588777	111588867	LINE	Lx9	L1	chr8Lx9111588425	ProperStrand	5	chr8	111588881	111588981	LTR	ORR1B1	MaLR	chr8ORR1B1111588871	ProperStrand	1	1	-inf
chr7	13028886	13028944	SINE	B4A	B4	chr7B4A13028817	ProperStrand	31	chr10	82184153	82184233	protein_coding	Hcfc2	intron	ENSMUSG00000020246	ProperStrand	29	1	-14.8249
chr1	100180169	100180215	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr5	146261266	146261349	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	2	-10.5559
chr14	100225114	100225175	LTR	MLT1E1A	MaLR	chr14MLT1E1A100224992	NonProperStrand	1	chr18	35591232	35591288	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-inf
chr17	39844281	39845854	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	39844201	39847282	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1402	-20.5252
chr17	39847866	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	53591267	53591348	protein_coding	Irf1	utr3	ENSMUSG00000018899	ProperStrand	3	1	-4.3512
chr17	70963678	70963793	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr12	109646682	109650156	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	3	-6.0653
chr1	72712407	72712469	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	61	chr14	75291171	75291234	protein_coding	Lrch1	intron	ENSMUSG00000068015	NonProperStrand	34	1	-13.1368
chr10	30198180	30198249	LINE	L1Md_T	L1	chr10L1Md_T30197906	NonProperStrand	1	chr17	39845360	39845439	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	1	-inf
chr6	112099488	112099588	LINE	Lx	L1	chr6Lx112099258	NonProperStrand	1	chr6	112098991	112099081	Simple_repeat	(TC)n	Simple_repeat	chr6(TC)n112099006	ProperStrand	1	1	-inf
chr13	44720276	44720351	LTR	MLT1I	MaLR	chr13MLT1I44720186	ProperStrand	1	chr17	39846428	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	167960037	167960127	SINE	B1_Mus2	Alu	chr2B1_Mus2167959970	NonProperStrand	2	chr2	167960136	167960236	SINE	B3	B2	chr2B3167960134	NonProperStrand	2	2	-inf
chr15	102298980	102300921	lincRNA	Gm17403	intron	ENSMUSG00000090630	NonProperStrand	27	chr15	102299899	102320658	protein_coding	Pcbp2	intron	ENSMUSG00000056851	ProperStrand	58	3	-inf
chr12	82291778	82291831	LTR	ERVL-E-int	ERVL	chr12ERVL-E-int82291723	ProperStrand	1	chr12	82298900	82298952	protein_coding	Slc8a3	utr3	ENSMUSG00000079055	NonProperStrand	115	1	-inf
chr3	89179147	89179163	SINE	B1_Mus1	Alu	chr3B1_Mus189179052	NonProperStrand	1	chr17	35835796	35835822	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	1	-inf
chr6	60256796	60256813	LINE	L1_Mus4	L1	chr6L1_Mus460256675	NonProperStrand	3	chr8	106761309	106761328	protein_coding	Tk2	intron	ENSMUSG00000035824	ProperStrand	8	1	-20.8155
chr19	48208642	48208742	LINE	L1_Mur2	L1	chr19L1_Mur248208314	ProperStrand	1	chr19	48208912	48209002	LTR	MTC	MaLR	chr19MTC48208911	NonProperStrand	1	1	-inf
chr5	110386522	110386593	DNA	Tigger7	MER2_type	chr5Tigger7110386475	ProperStrand	3	chr11	107030171	107030252	protein_coding	Nol11	intron	ENSMUSG00000018433	ProperStrand	34	1	-19.2479
chr8	32530741	32530764	Simple_repeat	(TTC)n	Simple_repeat	chr8(TTC)n32530679	ProperStrand	1	chr9	108011740	108011810	lincRNA	F630040L22Rik	intron	ENSMUSG00000087645	ProperStrand	3	1	-inf
chr9	123462102	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	46109174	46137255	protein_coding	Fat1	utr3	ENSMUSG00000070047	NonProperStrand	46	2	-3.0749
chr6	49258470	49258492	LTR	MT2A	ERVL	chr6MT2A49258357	NonProperStrand	3	chr18	77778527	77778740	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-16.1884
chr2	102029256	102029356	DNA	MER33	MER1_type	chr2MER33102029170	NonProperStrand	2	chr2	102029385	102029475	SINE	RSINE1	B4	chr2RSINE1102029392	NonProperStrand	2	2	-inf
chr1	57366681	57366718	LTR	IAPEz-int	ERVK	chr1IAPEz-int57366631	NonProperStrand	1	chr10	59674944	59674968	protein_coding	Chst3	intron	ENSMUSG00000057337	NonProperStrand	2	1	-inf
chr10	79864189	79864231	LTR	ORR1A4	MaLR	chr10ORR1A479864146	ProperStrand	2	chr9	123461957	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr9	15382219	15382237	protein_coding	Ccdc67	intron	ENSMUSG00000039977	NonProperStrand	12	chr11	60300753	60300861	protein_coding	Myo15	intron	ENSMUSG00000042678	NonProperStrand	36	1	-16.3850
chr10	106136323	106136423	protein_coding	Ppfia2	intron	ENSMUSG00000053825	NonProperStrand	9	chr10	107342379	107342470	protein_coding	Otogl	intron	ENSMUSG00000091455	ProperStrand	4	1	-inf
chr8	119533228	119533328	protein_coding-noncoding	Pkd1l2	utr3	ENSMUSG00000034416	NonProperStrand	1	chr8	119533067	119533157	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	NonProperStrand	3	1	-inf
chr1	89884118	89884175	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	chr1	178197077	178197124	protein_coding	Pld5	intron	ENSMUSG00000055214	NonProperStrand	32	1	-11.0656
chr16	36069513	36069613	protein_coding	Fam162a	intron	ENSMUSG00000003955	ProperStrand	95	chr16	17259619	17259709	protein_coding	Hic2	utr3	ENSMUSG00000050240	ProperStrand	111	1	-9.8638
chr17	39846756	39846841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	139246189	139246257	SINE	RSINE1	B4	chr4RSINE1139246150	NonProperStrand	1	1	-inf
chr10	81907811	81907876	LINE	L1_Mur1	L1	chr10L1_Mur181906804	ProperStrand	1	chr2	30810974	30811019	protein_coding-noncoding	Tor1b	utr5	ENSMUSG00000026848	ProperStrand	7	1	-inf
chr17	39845246	39845295	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr18	49893600	49893659	protein_coding	Dtwd2	intron	ENSMUSG00000024505	NonProperStrand	26	1	-3.7353
chr17	39846461	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr9	123461930	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	1	-14.7277
chr6	67281703	67281800	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr14	64747265	64747295	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	1	-7.6503
chr12	24843224	24843340	LTR	MMERVK10C-int	ERVK	chr12MMERVK10C-int24843106	ProperStrand	4	chr12	24843346	24843446	LTR	MMERVK10C-int	ERVK	chr12MMERVK10C-int24843342	ProperStrand	2	2	-inf
chr19	25553745	25553835	LTR	ORR1C2-int	MaLR	chr19ORR1C2-int25553663	ProperStrand	2	chr19	25553843	25553943	LTR	ORR1C2	MaLR	chr19ORR1C225553809	ProperStrand	2	2	-inf
chr8	33777242	33777332	SINE	MIRb	MIR	chr8MIRb33777195	ProperStrand	1	chr8	33777353	33777453	SINE	PB1D10	Alu	chr8PB1D1033777374	ProperStrand	1	1	-inf
chr2	23156622	23160215	LINE	L1Md_F3	L1	chr2L1Md_F323151457	ProperStrand	2	chr17	39846699	39846717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	34980264	34980303	protein_coding	Skiv2l	intron	ENSMUSG00000040356	ProperStrand	6	chr6	128140831	128140919	protein_coding	Gm10010	intron	ENSMUSG00000056771	ProperStrand	5	1	-inf
chr18	61142509	61142571	protein_coding	Camk2a	intron	ENSMUSG00000024617	NonProperStrand	18	chr4	34810584	34810636	protein_coding	Zfp292	intron	ENSMUSG00000039967	ProperStrand	60	1	-14.4717
chr6	140648067	140648157	LTR	RLTR13B2	ERVK	chr6RLTR13B2140648069	ProperStrand	1	chr6	140647550	140647650	SINE	B3A	B2	chr6B3A140647569	ProperStrand	1	1	-inf
chr15	87688531	87688638	LINE	HAL1-3A_ME	L1	chr15HAL1-3A_ME87688517	ProperStrand	1	chr9	123461905	123461958	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	93658248	93658269	LINE	L1Md_A	L1	chr11L1Md_A93656904	ProperStrand	1	chr17	39847440	39847549	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	108425830	108425926	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	57	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-13.8220
chr2	73740134	73740234	LINE	Lx7	L1	chr2Lx773740094	ProperStrand	1	chr2	73740306	73740398	SINE	B2_Mm1t	B2	chr2B2_Mm1t73740328	ProperStrand	1	1	-inf
chr4	98738179	98738292	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	chr13	97190561	97190583	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.9820
chr6	140564645	140564745	SINE	B3A	B2	chr6B3A140564650	NonProperStrand	1	chr6	140564483	140564573	SINE	B4	B4	chr6B4140564459	NonProperStrand	1	1	-inf
chr17	39848162	39848273	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	135058105	135058130	protein_coding	Nhedc1	intron	ENSMUSG00000050150	NonProperStrand	4	1	-6.6701
chr17	39847598	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	83929983	83930047	LTR	RLTR17	ERVK	chr1RLTR1783929870	ProperStrand	1	1	-inf
chr16	18241755	18241791	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	38	chr15	94652725	94652793	protein_coding	Tmem117	intron	ENSMUSG00000063296	ProperStrand	43	1	-13.6207
chr1	166910849	166910939	LTR	IAPEY3-int	ERVK	chr1IAPEY3-int166908471	ProperStrand	1	chr2	134606442	134606542	LTR	MLT1J1	MaLR	chr2MLT1J1134606400	ProperStrand	1	1	-inf
chr17	39847532	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	130262918	130262985	LTR	MLT1A0	MaLR	chrXMLT1A0130262910	ProperStrand	1	1	-inf
chr11	69073484	69073559	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	chr2	167338044	167338090	protein_coding	Rnf114	exon	ENSMUSG00000006418	NonProperStrand	70	1	-13.1833
chr16	61056407	61056436	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	4	chr17	39847102	39847220	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr5	106833615	106833705	LTR	MTC	MaLR	chr5MTC106833455	NonProperStrand	1	chr5	106833743	106833843	LTR	MTC	MaLR	chr5MTC106833753	NonProperStrand	1	1	-inf
chr4	81398909	81399009	LINE	L1Md_F2	L1	chr4L1Md_F281398373	NonProperStrand	1	chr4	81418862	81418952	LINE	L1Md_T	L1	chr4L1Md_T81418366	ProperStrand	1	1	-inf
chr14	56886642	56887842	LINE	L1Md_F2	L1	chr14L1Md_F256885718	ProperStrand	1	chr17	39846813	39846851	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	83656146	83656246	LINE	L1_Mus2	L1	chr8L1_Mus283656124	NonProperStrand	4	chr8	83656007	83656097	SINE	B1_Mus1	Alu	chr8B1_Mus183655950	ProperStrand	4	4	-inf
chr2	5680222	5680320	SINE	B4A	B4	chr2B4A5680009	ProperStrand	2	chr3	145933309	145933368	protein_coding	Lpar3	intron	ENSMUSG00000036832	ProperStrand	8	2	-inf
chr13	97135585	97135650	LINE	L1_Rod	L1	chr13L1_Rod97134707	ProperStrand	5	chr17	39847659	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr9	123461842	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr6	6980081	6980157	protein_coding	Acn9	intron	ENSMUSG00000042505	ProperStrand	10	1	-4.3847
chr7	142378659	142378759	LTR	MT2A	ERVL	chr7MT2A142378456	ProperStrand	2	chr7	142378771	142378861	LTR	MTEa	MaLR	chr7MTEa142378792	ProperStrand	2	2	-inf
chr13	114077385	114077474	LTR	MTD	MaLR	chr13MTD114077273	ProperStrand	3	chr11	3140227	3140284	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	73	1	-18.1248
chr13	91808488	91808524	protein_coding	Ssbp2	intron	ENSMUSG00000003992	ProperStrand	8	chr9	31194738	31194852	protein_coding	Nfrkb	intron	ENSMUSG00000042185	NonProperStrand	30	1	-17.5395
chr15	66264360	66264418	protein_coding	Lrrc6	intron	ENSMUSG00000022375	ProperStrand	66	chr5	90222422	90222490	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	1	-11.5205
chr17	78762120	78762182	protein_coding	Crim1	intron	ENSMUSG00000024074	NonProperStrand	26	chr7	19149834	19149886	protein_coding	Psg27	intron	ENSMUSG00000070797	NonProperStrand	12	1	-17.0151
chr11	77853035	77853086	protein_coding	Flot2	intron	ENSMUSG00000061981	ProperStrand	30	chr1	89757687	89757769	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-10.8817
chr7	112822570	112822640	protein_coding-noncoding	Dnhd1	utr5	ENSMUSG00000030882	ProperStrand	1	chr7	112821211	112821282	protein_coding	Dnhd1	intron	ENSMUSG00000030882	ProperStrand	238	1	-inf
chr9	110281303	110281338	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr17	30464291	30464403	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	2	-5.1278
chr1	183408670	183408738	DNA	MER2	MER2_type	chr1MER2183408683	ProperStrand	1	chr6	33614700	33614759	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-inf
chr11	33421804	33421904	LTR	RLTR18	ERVK	chr11RLTR1833421799	NonProperStrand	2	chr11	33421922	33422012	Other	RMER1B	Other	chr11RMER1B33421902	NonProperStrand	2	2	-inf
chr8	54851234	54851324	LINE	L1MEf	L1	chr8L1MEf54850774	NonProperStrand	1	chr8	54851364	54851464	SINE	B2_Mm1t	B2	chr8B2_Mm1t54851356	ProperStrand	1	1	-inf
chr18	60987119	60987137	protein_coding	Tcof1	intron	ENSMUSG00000024613	NonProperStrand	5	chr2	145856999	145857044	protein_coding	4930529M08Rik	intron	ENSMUSG00000037143	ProperStrand	37	1	-18.2685
chr7	34110083	34110156	LINE	L1Md_F3	L1	chr7L1Md_F334109775	NonProperStrand	8	chr6	39336911	39336975	protein_coding	Rab19	intron	ENSMUSG00000029923	NonProperStrand	21	1	-18.3864
chr17	39847175	39847204	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	120794966	120795521	SINE	RSINE1	B4	chr11RSINE1120794878	NonProperStrand	1	1	-inf
chr17	47214738	47214838	LTR	ORR1A2	MaLR	chr17ORR1A247214703	NonProperStrand	1	chr17	47214616	47214706	SINE	B1_Mur4	Alu	chr17B1_Mur447214553	NonProperStrand	1	1	-inf
chr3	101836251	101836302	SINE	B1_Mus2	Alu	chr3B1_Mus2101836225	NonProperStrand	1	chr18	55165330	55165349	lincRNA	Gm4221	intron	ENSMUSG00000085098	NonProperStrand	3	1	-inf
chr10	4277356	4277416	LINE	L1_Mus2	L1	chr10L1_Mus24277244	ProperStrand	10	chr15	76067488	76067538	protein_coding	Parp10	intron	ENSMUSG00000063268	ProperStrand	64	2	-inf
chr4	147096143	147096214	SINE	B3	B2	chr4B3147095992	ProperStrand	1	chr13	97190573	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr4	56805904	56805920	protein_coding	Ikbkap	intron	ENSMUSG00000028431	ProperStrand	109	chr10	61434989	61435064	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-7.0630
chr9	123461964	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	10151079	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	2	-3.7021
chr2	73732820	73732934	lincRNA	Gm10822	intron	ENSMUSG00000075281	NonProperStrand	1	chr9	123461931	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	75827879	75827969	LTR	MLT1A	MaLR	chr7MLT1A75827684	NonProperStrand	1	chr4	111782921	111783021	protein_coding	Skint4	intron	ENSMUSG00000055960	ProperStrand	10	1	-inf
chr18	63629186	63629276	DNA	URR1A	MER1_type	chr18URR1A63629145	ProperStrand	1	chr18	63629308	63629408	LTR	ORR1B1	MaLR	chr18ORR1B163629293	ProperStrand	1	1	-inf
chrX	41875004	41875042	LINE	L1Md_T	L1	chrXL1Md_T41874221	NonProperStrand	3	chrX	41894201	41894296	LINE	L1_Rod	L1	chrXL1_Rod41894124	ProperStrand	3	3	-inf
chr17	39847385	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	48533063	48533190	LTR	ORR1D2	MaLR	chr6ORR1D248532976	NonProperStrand	1	1	-inf
chr7	132988752	132988806	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	chr8	13078041	13078085	protein_coding	Pcid2	utr3	ENSMUSG00000038542	ProperStrand	42	1	-9.5706
chr9	97079408	97079498	LTR	RMER12	ERVK	chr9RMER1297078997	ProperStrand	9	chr2	173094181	173094281	protein_coding	Pmepa1	intron	ENSMUSG00000038400	NonProperStrand	4	1	-inf
chr2	130276254	130276350	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	132	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-7.3289
chr1	31783507	31783607	LTR	IAPLTR2b	ERVK	chr1IAPLTR2b31783265	ProperStrand	1	chr1	31783744	31783834	LTR	RMER19B	ERVK	chr1RMER19B31783614	NonProperStrand	1	1	-inf
chr2	22744845	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	6433823	6439436	Simple_repeat	(GAGAA)n	Simple_repeat	chr11(GAGAA)n6439381	NonProperStrand	1	1	-inf
chr17	39847337	39848080	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	97190541	97190632	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	174	-9.6912
chr9	40803993	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr5	125297338	125298662	protein_coding	Dnahc10	intron	ENSMUSG00000038011	NonProperStrand	81	1	-6.8430
chr10	50799555	50799645	LINE	L1Md_T	L1	chr10L1Md_T50799355	NonProperStrand	1	chr10	50800010	50800110	LINE	Lx6	L1	chr10Lx650799723	NonProperStrand	1	1	-inf
chr5	75641148	75641360	LINE	L1_Rod	L1	chr5L1_Rod75641151	NonProperStrand	3	chr5	75641051	75641141	LTR	ORR1A2	MaLR	chr5ORR1A275640825	ProperStrand	2	2	-inf
chr4	123448235	123449986	LTR	IAPEz-int	ERVK	chr4IAPEz-int123448356	ProperStrand	7	chr4	123440652	123440714	LTR	ORR1B1	MaLR	chr4ORR1B1123440487	ProperStrand	3	2	-inf
chr5	146260994	146261032	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	38486532	38486548	protein_coding	Cd80	utr3	ENSMUSG00000075122	ProperStrand	11	1	-8.4703
chr7	136966182	136966226	LTR	MLT1D	MaLR	chr7MLT1D136966115	NonProperStrand	1	chr9	123461798	123461874	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	70416687	70416787	protein_coding	Sltm	intron	ENSMUSG00000032212	ProperStrand	15	chr15	79562554	79568700	protein_coding	Sun2	intron	ENSMUSG00000042524	ProperStrand	7	1	-18.9688
chr18	45152805	45152895	LTR	MT2A	ERVL	chr18MT2A45152711	NonProperStrand	1	chr18	45152467	45152567	LTR	RMER17A	ERVK	chr18RMER17A45151911	ProperStrand	1	1	-inf
chr10	51438425	51438525	protein_coding	Rfx6	intron	ENSMUSG00000019900	ProperStrand	4	chr9	35393023	35393113	protein_coding	Pate2	intron	ENSMUSG00000074452	NonProperStrand	4	1	-inf
chr14	56622479	56622574	LINE	L1_Mus3	L1	chr14L1_Mus356619509	NonProperStrand	1	chr17	39847165	39847211	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr15	8188860	8194325	protein_coding	2410089E03Rik	intron	ENSMUSG00000039801	NonProperStrand	8	chr18	12921607	12921695	protein_coding	Osbpl1a	intron	ENSMUSG00000044252	ProperStrand	48	1	-16.6160
chr7	89954975	89955012	LINE	Lx5	L1	chr7Lx589954450	ProperStrand	3	chr17	39843759	39843785	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-9.1352
chr8	114991516	114991616	LINE	Lx3_Mus	L1	chr8Lx3_Mus114991407	NonProperStrand	5	chr8	114991427	114991517	LINE	Lx3_Mus	L1	chr8Lx3_Mus114991407	ProperStrand	7	5	-inf
chr14	75847904	75847972	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr11	85644367	85644412	lincRNA	2610027K06Rik	intron	ENSMUSG00000087013	NonProperStrand	13	1	-16.5651
chr1	188974437	188976666	protein_coding	Spata17	intron	ENSMUSG00000026611	ProperStrand	80	chr9	121744002	121744102	protein_coding	Ccdc13	intron	ENSMUSG00000079235	NonProperStrand	17	1	-14.0080
chr17	39847844	39847886	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	88716961	88717044	SINE	B3	B2	chr15B388716968	ProperStrand	1	1	-inf
chr1	89514188	89514251	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int89514121	ProperStrand	16	chr1	89513412	89513465	LTR	ORR1E	MaLR	chr1ORR1E89513099	NonProperStrand	5	1	-inf
chr6	66245038	66245138	LINE	Lx4B	L1	chr6Lx4B66244975	NonProperStrand	1	chr6	66244868	66244958	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n66244876	ProperStrand	1	1	-inf
chr17	67933320	67933420	SINE	ID_B1	B4	chr17ID_B167933248	ProperStrand	5	chr17	67933487	67933577	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n67933396	NonProperStrand	5	5	-inf
chr7	75771655	75771688	LINE	L1Md_F2	L1	chr7L1Md_F275769915	NonProperStrand	42	chr9	65201725	65201816	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-11.7766
chr1	71623465	71623587	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	chr14	118153655	118153672	protein_coding	Gpc6	intron	ENSMUSG00000058571	ProperStrand	66	1	-11.2772
chrX	87238369	87238393	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr5	115489520	115489554	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-6.6338
chr17	39846032	39846060	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	119289222	119289260	protein_coding	Ino80	intron	ENSMUSG00000034154	NonProperStrand	50	2	-4.0843
chr11	78181512	78182811	protein_coding	Foxn1	intron	ENSMUSG00000002057	NonProperStrand	7	chr11	70909629	70909730	protein_coding	Nlrp1a	intron	ENSMUSG00000069830	NonProperStrand	19	1	-18.4879
chr2	13216809	13217203	protein_coding	Cubn	intron	ENSMUSG00000026726	ProperStrand	65	chr2	13169984	13170084	protein_coding	Rsu1	intron	ENSMUSG00000026727	ProperStrand	40	2	-inf
chr15	56104231	56104321	LINE	L1MA9	L1	chr15L1MA956103925	NonProperStrand	1	chr15	56103781	56103881	SINE	MIRb	MIR	chr15MIRb56103767	ProperStrand	1	1	-inf
chr17	39847338	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	79580942	79580963	LTR	ETnERV3-int	ERVK	chr6ETnERV3-int79579148	NonProperStrand	1	1	-inf
chr2	71805768	71805847	LTR	RLTR11B	ERVK	chr2RLTR11B71805503	NonProperStrand	3	chr4	128654544	128654564	LTR	RMER6D	ERVK	chr4RMER6D128654505	NonProperStrand	1	1	-inf
chr14	20470217	20470266	LTR	MurERV4-int	ERVK	chr14MurERV4-int20469374	NonProperStrand	1	chr17	39847252	39847304	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39846491	39847027	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	112363190	112363841	protein_coding	Aven	intron	ENSMUSG00000003604	NonProperStrand	8	4	-9.5349
chr8	111538789	111538818	SINE	B3	B2	chr8B3111538725	ProperStrand	1	chr12	80722996	80723103	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-inf
chr5	72372190	72372290	protein_coding	Gabrb1	intron	ENSMUSG00000029212	NonProperStrand	14	chr7	103550742	103550832	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-14.9925
chr17	32263885	32263954	protein_coding	Notch3	intron	ENSMUSG00000038146	ProperStrand	60	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.5482
chr4	151398636	151398736	protein_coding	Zbtb48	intron	ENSMUSG00000028952	ProperStrand	4	chr12	79507604	79507694	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	3	-28.2815
chr17	25077973	25078003	SINE	B1_Mus1	Alu	chr17B1_Mus125077973	NonProperStrand	1	chr17	25061768	25061822	protein_coding	Mapk8ip3	intron	ENSMUSG00000024163	NonProperStrand	44	1	-inf
chr6	122792105	122792205	protein_coding	Foxj2	intron	ENSMUSG00000003154	NonProperStrand	16	chr2	32255662	32255752	protein_coding	Ptges2	intron	ENSMUSG00000026820	NonProperStrand	10	3	-23.4928
chr2	145699121	145699171	protein_coding	Rin2	intron	ENSMUSG00000001768	ProperStrand	9	chr12	112987983	112988023	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	NonProperStrand	45	1	-16.5079
chr2	115744761	115744781	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	chr5	115178598	115178707	protein_coding	Git2	utr3	ENSMUSG00000041890	ProperStrand	40	1	-10.9353
chr16	14309562	14309652	protein_coding	0610037P05Rik	intron	ENSMUSG00000022677	ProperStrand	7	chr19	46234740	46234809	protein_coding	Gbf1	intron	ENSMUSG00000025224	ProperStrand	72	1	-16.0883
chr1	161038131	161038158	LINE	L1MEc	L1	chr1L1MEc161037911	ProperStrand	9	chr17	39847264	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.1539
chr8	31149862	31149969	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr17	39846212	39847047	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	12	-6.1199
chr5	146261024	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	29628910	29628995	protein_coding	Trub2	intron	ENSMUSG00000039826	NonProperStrand	115	1	-3.8244
chr1	36805846	36805946	DNA	URR1A	MER1_type	chr1URR1A36805755	ProperStrand	1	chr1	36805952	36806042	LTR	ORR1D2	MaLR	chr1ORR1D236805971	ProperStrand	1	1	-inf
chr17	39846461	39846508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	91207895	91207916	protein_coding	Nod2	intron	ENSMUSG00000055994	ProperStrand	1	1	-inf
chr17	39847581	39847683	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	112442212	112442231	protein_coding	Phlpp2	intron	ENSMUSG00000031732	ProperStrand	3	1	-4.3512
chr10	23785399	23785453	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr11	83484033	83484129	LINE	L1M2	L1	chr11L1M283482405	NonProperStrand	3	1	-16.4594
chr8	44827912	44828012	LINE	L1_Mur3	L1	chr8L1_Mur344827793	NonProperStrand	1	chr8	44828097	44828187	LINE	L1_Mur3	L1	chr8L1_Mur344828045	NonProperStrand	1	1	-inf
chr17	39845857	39845956	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chrX	151601793	151601812	LTR	RLTR13D1	ERVK	chrXRLTR13D1151601734	NonProperStrand	1	1	-inf
chr5	118708390	118708464	protein_coding	2410131K14Rik	intron	ENSMUSG00000032840	ProperStrand	127	chr2	113364654	113364672	protein_coding	Fmn1	intron	ENSMUSG00000044042	NonProperStrand	14	1	-13.4810
chr4	135216665	135216686	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n135216554	NonProperStrand	3	chr6	13594772	13594901	protein_coding	B630005N14Rik	intron	ENSMUSG00000042742	ProperStrand	12	1	-21.1865
chr6	116033541	116033591	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	chr13	44869574	44869644	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.5247
chr12	40410676	40410776	DNA	MER45C	Tip100	chr12MER45C40410635	NonProperStrand	6	chr1	46509430	46509520	LINE	L1VL4	L1	chr1L1VL446507742	NonProperStrand	1	1	-inf
chr1	156833758	156833858	LTR	ORR1B2	MaLR	chr1ORR1B2156833762	NonProperStrand	1	chr1	156833914	156834004	LTR	RLTR13B3	ERVK	chr1RLTR13B3156833898	NonProperStrand	3	1	-inf
chr5	88786913	88786985	LINE	L1_Mm	L1	chr5L1_Mm88785784	NonProperStrand	1	chr17	39847230	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	79905400	79905430	protein_coding	Mpp5	intron	ENSMUSG00000021112	ProperStrand	6	chr5	143522494	143522574	protein_coding	Tnrc18	intron	ENSMUSG00000039477	ProperStrand	20	1	-19.3610
chr3	68510438	68510500	LTR	ORR1E	MaLR	chr3ORR1E68510202	ProperStrand	1	chr3	68515178	68515272	LTR	RLTR11A	ERVK	chr3RLTR11A68515127	ProperStrand	1	1	-inf
chr17	39843483	39843559	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	14129157	14131026	protein_coding	Fam23a	intron	ENSMUSG00000061531	NonProperStrand	1	1	-inf
chrX	105235297	105235384	LINE	L1Md_F2	L1	chrXL1Md_F2105232893	NonProperStrand	1	chr9	123461802	123461849	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	85939044	85939118	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	1	-13.6804
chr17	39847223	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	12663388	12663488	protein_coding	Stx11	intron	ENSMUSG00000039232	ProperStrand	7	1	-3.6430
chr7	16789931	16789979	protein_coding	Dhx34	intron	ENSMUSG00000006019	NonProperStrand	71	chr15	53298738	53298776	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	2	-12.7836
chr13	114370764	114370828	SINE	PB1D7	Alu	chr13PB1D7114370712	ProperStrand	1	chr15	82956261	82956346	SINE	RSINE1	B4	chr15RSINE182956203	NonProperStrand	2	1	-inf
chr3	102914779	102914808	protein_coding	Dennd2c	intron	ENSMUSG00000007379	NonProperStrand	3	chr9	123462017	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr1	163541064	163541164	LTR	IAP-d-int	ERVK	chr1IAP-d-int163540793	NonProperStrand	1	chr1	163540571	163540661	LTR	RLTR10A	ERVK	chr1RLTR10A163540511	NonProperStrand	1	1	-inf
chr3	94842465	94842505	protein_coding	Psmd4	intron	ENSMUSG00000005625	NonProperStrand	4	chr17	24420016	24420046	protein_coding	Abca17	intron	ENSMUSG00000035435	NonProperStrand	73	1	-17.3642
chr2	159525948	159526038	LINE	L1ME2	L1	chr2L1ME2159525890	ProperStrand	1	chr2	159526132	159526232	LTR	ORR1B1	MaLR	chr2ORR1B1159526104	NonProperStrand	1	1	-inf
chr2	31698765	31698867	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	chr9	50521851	50521878	protein_coding	Dixdc1	intron	ENSMUSG00000032064	ProperStrand	17	1	-12.8835
chr11	61546670	61546693	protein_coding	Prpsap2	intron	ENSMUSG00000020528	ProperStrand	74	chr16	38533594	38533627	protein_coding	Poglut1	intron	ENSMUSG00000034064	ProperStrand	24	1	-13.4571
chrX	20719665	20719755	LINE	L1VL4	L1	chrXL1VL420719512	ProperStrand	1	chrX	20719277	20719377	LINE	L1_Mus1	L1	chrXL1_Mus120719037	NonProperStrand	1	1	-inf
chr2	5652530	5652570	LTR	RLTR25B	ERVK	chr2RLTR25B5652527	NonProperStrand	1	chr11	78213427	78216289	protein_coding	Slc13a2	intron	ENSMUSG00000001095	ProperStrand	33	1	-inf
chr12	83637364	83637412	LINE	L1M2	L1	chr12L1M283637278	ProperStrand	3	chr12	83637732	83637790	LTR	ORR1A3	MaLR	chr12ORR1A383637453	NonProperStrand	1	1	-inf
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr7	127530572	127530619	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	118	1	-3.2319
chr1	157388861	157388934	LTR	MERVL-int	ERVL	chr1MERVL-int157386062	ProperStrand	1	chr19	46515451	46515515	protein_coding	Sufu	intron	ENSMUSG00000025231	ProperStrand	59	1	-inf
chr11	103116329	103116462	protein_coding	Map3k14	intron	ENSMUSG00000020941	NonProperStrand	62	chr9	110281286	110281309	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.4976
chrX	87238359	87238378	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr9	105644575	105644678	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-11.1729
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr13	44869574	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-8.9968
chr9	119921706	119921786	SINE	B1_Mur1	Alu	chr9B1_Mur1119921710	NonProperStrand	1	chr9	119919643	119919686	SINE	PB1D7	Alu	chr9PB1D7119919614	NonProperStrand	2	1	-inf
chr8	110845673	110845763	LINE	L1Md_F2	L1	chr8L1Md_F2110845558	NonProperStrand	1	chr17	39847449	39847549	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	46755720	46755810	lincRNA	Gm16736	intron	ENSMUSG00000086673	ProperStrand	89	chr9	40330013	40330113	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	4	-inf
chr4	139118585	139118630	protein_coding	Iffo2	intron	ENSMUSG00000041025	NonProperStrand	59	chr18	7435194	7435295	protein_coding	Mpp7	intron	ENSMUSG00000057440	ProperStrand	99	1	-11.0499
chr11	55556627	55556717	Low_complexity	CT-rich	Low_complexity	chr11CT-rich55556633	NonProperStrand	1	chr11	55556437	55556537	SINE	B3A	B2	chr11B3A55556356	ProperStrand	1	1	-inf
chr17	33906397	33906487	SINE	B2_Mm2	B2	chr17B2_Mm233906377	NonProperStrand	1	chr11	75697589	75697689	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	1	-inf
chr19	7214625	7214725	protein_coding	Macrod1	intron	ENSMUSG00000036278	ProperStrand	112	chr13	9465500	9465590	protein_coding	Dip2c	intron	ENSMUSG00000048264	NonProperStrand	18	1	-13.2146
chr17	39843656	39843674	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chrX	99218918	99218937	protein_coding	Nhsl2	intron	ENSMUSG00000079481	ProperStrand	20	1	-4.5988
chr3	103064333	103064405	LTR	ORR1C2	MaLR	chr3ORR1C2103064148	NonProperStrand	1	chr9	47570646	47570708	protein_coding	Cadm1	intron	ENSMUSG00000032076	NonProperStrand	10	1	-inf
chr2	27293580	27293644	LTR	MLT1C	MaLR	chr2MLT1C27293487	NonProperStrand	1	chr2	27294290	27294334	SINE	PB1D7	Alu	chr2PB1D727294285	NonProperStrand	1	1	-inf
chr11	23405905	23412249	LTR	LTRIS2	ERV1	chr11LTRIS223405800	ProperStrand	3	chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	1	-19.7972
chr17	70963681	70963765	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	149120029	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	ProperStrand	14	1	-9.1421
chrX	52519000	52519042	LINE	L1VL1	L1	chrXL1VL152518779	ProperStrand	1	chrX	52557867	52557899	LINE	L1_Mus1	L1	chrXL1_Mus152557464	NonProperStrand	1	1	-inf
chr11	3150490	3150624	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	73	chr4	32666577	32666593	protein_coding	Bach2	intron	ENSMUSG00000040270	NonProperStrand	12	1	-14.9240
chr3	41569680	41569770	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr3	41566119	41566219	LTR	MER70A	ERVL	chr3MER70A41565974	NonProperStrand	3	1	-17.6885
chr18	24047639	24047657	protein_coding	Mapre2	intron	ENSMUSG00000024277	NonProperStrand	17	chr8	12888432	12888494	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-11.1847
chr9	123461943	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	73662700	73709009	protein_coding	Atf2	intron	ENSMUSG00000027104	ProperStrand	38	2	-3.5608
chr1	46887394	46887484	protein_coding	Slc39a10	intron	ENSMUSG00000025986	NonProperStrand	2	chr1	46878825	46878925	protein_coding	Slc39a10	intron	ENSMUSG00000025986	ProperStrand	2	1	-19.8939
chr14	21340364	21340440	protein_coding	Ppp3cb	intron	ENSMUSG00000021816	NonProperStrand	22	chr8	3390065	3390123	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	ProperStrand	5	1	-20.3524
chr4	108230338	108230354	protein_coding-noncoding	Zcchc11	utr5	ENSMUSG00000034610	NonProperStrand	1	chr1	166114463	166114589	protein_coding	F5	intron	ENSMUSG00000026579	NonProperStrand	12	1	-inf
chr19	36876366	36879267	LINE	L2	L2	chr19L236879149	ProperStrand	6	chr18	73590362	73590433	Other	RMER1A	Other	chr18RMER1A73590330	NonProperStrand	1	1	-inf
chr19	34976988	34977035	LTR	ORR1C2	MaLR	chr19ORR1C234976923	NonProperStrand	3	chr1	15857511	15857557	protein_coding	Gm106	intron	ENSMUSG00000032719	NonProperStrand	24	1	-20.7706
chr17	39847735	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	57945169	57950883	SINE	B1_Mur2	Alu	chr4B1_Mur257950796	NonProperStrand	6	4	-11.7764
chr17	39843798	39843863	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	164795140	164795168	protein_coding	Slc12a5	intron	ENSMUSG00000017740	NonProperStrand	26	1	-4.5417
chr17	39846430	39847039	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	12801863	12801897	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	8	-4.7669
chr14	69246811	69246936	protein_coding	Adam28	intron	ENSMUSG00000014725	NonProperStrand	1	chr18	75780336	75780357	protein_coding	Ctif	intron	ENSMUSG00000052928	ProperStrand	59	1	-inf
chr16	13814059	13814161	protein_coding	Rrn3	utr3	ENSMUSG00000022682	ProperStrand	46	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.3808
chr6	38606177	38606277	LTR	MTEa	MaLR	chr6MTEa38606193	NonProperStrand	5	chr16	13127908	13127998	protein_coding	Ercc4	intron	ENSMUSG00000022545	ProperStrand	19	1	-19.0437
chr18	77069500	77069538	LTR	LTR16C	ERVL	chr18LTR16C77069473	NonProperStrand	4	chr18	77074237	77074346	Simple_repeat	(TAGA)n	Simple_repeat	chr18(TAGA)n77074200	ProperStrand	1	1	-inf
chr8	66046355	66046445	LINE	L1_Mur3	L1	chr8L1_Mur366045634	ProperStrand	1	chr8	66046605	66046705	LINE	Lx7	L1	chr8Lx766046489	ProperStrand	1	1	-inf
chr14	97874727	97874817	LINE	L1_Mus4	L1	chr14L1_Mus497874044	ProperStrand	1	chr14	97874869	97874969	SINE	B1_Mus1	Alu	chr14B1_Mus197874897	ProperStrand	1	1	-inf
chr2	164848056	164848151	protein_coding	Ncoa5	intron	ENSMUSG00000039804	ProperStrand	61	chr16	91701571	91701634	protein_coding	Cryzl1	intron	ENSMUSG00000058240	ProperStrand	22	2	-inf
chr17	39843691	39843799	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr13	19102879	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	1	-4.3310
chr1	100180176	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr12	78350938	78351044	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-4.5840
chr2	175483187	175483275	LINE	L1_Mus1	L1	chr2L1_Mus1175482634	NonProperStrand	15	chr7	143223989	143224012	SINE	ID_B1	B4	chr7ID_B1143223894	NonProperStrand	1	1	-inf
chr15	36001010	36001090	protein_coding	Rgs22	intron	ENSMUSG00000037627	ProperStrand	6	chr3	88904854	88904919	protein_coding	Fdps	intron	ENSMUSG00000059743	ProperStrand	2	1	-inf
chrX	20670758	20671371	LTR	ORR1A1-int	MaLR	chrXORR1A1-int20670687	NonProperStrand	17	chrX	20670293	20670767	LTR	ORR1A1	MaLR	chrXORR1A120670341	NonProperStrand	6	5	-inf
chr17	39848124	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	10712193	10712273	protein_coding	Vwce	intron	ENSMUSG00000043789	ProperStrand	8	1	-5.1688
chr1	122357166	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr14	78683836	78683864	protein_coding	Tnfsf11	intron	ENSMUSG00000022015	ProperStrand	100	1	-7.8877
chr9	54601202	54603321	SINE	MIRc	MIR	chr9MIRc54603226	NonProperStrand	2	chr4	98447560	98447628	protein_coding	Kank4	intron	ENSMUSG00000035407	NonProperStrand	19	1	-20.1864
chr1	90424553	90424643	LINE	L1ME2	L1	chr1L1ME290424197	ProperStrand	1	chr1	90424668	90424768	LTR	MTD	MaLR	chr1MTD90424691	ProperStrand	1	1	-inf
chr1	33489274	33489397	LINE	L1Md_F2	L1	chr1L1Md_F233485692	ProperStrand	1	chr17	39846411	39846433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	79098354	79098372	SINE	MIRb	MIR	chr3MIRb79098352	NonProperStrand	1	chr8	84445449	84445567	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-inf
chr3	51496074	51496174	protein_coding	Maml3	intron	ENSMUSG00000061143	NonProperStrand	13	chr17	30455313	30455403	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-10.3423
chr17	39846758	39846809	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	148853709	148853750	antisense	Gm13097	.	ENSMUSG00000087198	ProperStrand	1	1	-inf
chr8	84699695	84699711	LINE	Lx2	L1	chr8Lx284698625	NonProperStrand	21	chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-11.5532
chr8	72940945	72941022	protein_coding	Crtc1	intron	ENSMUSG00000003575	ProperStrand	20	chr13	97190561	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.3035
chr8	116581805	116581835	LINE	Lx5	L1	chr8Lx5116581574	ProperStrand	1	chr8	116581162	116581227	Low_complexity	CT-rich	Low_complexity	chr8CT-rich116580848	NonProperStrand	1	1	-inf
chr16	35981617	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr1	33623775	33623899	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	1	-8.1772
chr8	71833325	71833425	LINE	Lx5	L1	chr8Lx571828767	ProperStrand	2	chr8	71822384	71822474	LINE	Lx	L1	chr8Lx71820881	NonProperStrand	1	1	-inf
chr5	92682639	92682739	SINE	ID_B1	B4	chr5ID_B192682652	ProperStrand	1	chr5	92682892	92682982	SINE	PB1D10	Alu	chr5PB1D1092682889	ProperStrand	1	1	-inf
chr17	39846462	39846479	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	26524897	26525010	Simple_repeat	(GGGGA)n	Simple_repeat	chr14(GGGGA)n26524875	NonProperStrand	1	1	-inf
chr9	123461882	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	161241797	161244489	protein_coding	Rfwd2	intron	ENSMUSG00000040782	NonProperStrand	36	3	-5.6584
chr16	18533186	18533220	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	chr14	7908678	7909669	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-10.8274
chr3	116581831	116581862	protein_coding	Frrs1	intron	ENSMUSG00000033386	ProperStrand	12	chr6	93892732	93892784	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-9.5405
chr17	39846816	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	28481147	28481225	protein_coding	C030039L03Rik	intron	ENSMUSG00000057093	NonProperStrand	4	1	-3.6552
chr9	103365556	103365605	protein_coding	Bfsp2	intron	ENSMUSG00000032556	ProperStrand	72	chr13	51769937	51770047	protein_coding	Secisbp2	intron	ENSMUSG00000035139	NonProperStrand	64	1	-11.5258
chr15	76248580	76248640	protein_coding	Heatr7a	intron	ENSMUSG00000022558	ProperStrand	9	chr11	48802088	48802108	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-13.1574
chr13	21494009	21494109	protein_coding-noncoding	Zkscan3	utr3	ENSMUSG00000021327	NonProperStrand	1	chr13	21493827	21493917	protein_coding	Zkscan3	intron	ENSMUSG00000021327	NonProperStrand	3	1	-inf
chr17	74309091	74309156	LINE	L1_Mus4	L1	chr17L1_Mus474308686	ProperStrand	1	chr16	17103517	17103608	protein_coding	Ppil2	intron	ENSMUSG00000022771	ProperStrand	23	1	-inf
chr5	110161758	110161822	LTR	IAP-d-int	ERVK	chr5IAP-d-int110161743	NonProperStrand	1	chr5	147877679	147877733	protein_coding	Lnx2	intron	ENSMUSG00000016520	NonProperStrand	26	1	-inf
chr10	122565825	122565915	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr2	80494105	80494205	protein_coding	Nup35	intron	ENSMUSG00000026999	ProperStrand	1	1	-inf
chr15	77606272	77606362	protein_coding	Myh9	exon	ENSMUSG00000022443	NonProperStrand	5	chr15	77607142	77607242	protein_coding	Myh9	intron	ENSMUSG00000022443	ProperStrand	2	1	-23.2669
chr3	8936424	8936507	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	chr15	74416742	74416815	protein_coding	Bai1	intron	ENSMUSG00000034730	NonProperStrand	39	1	-9.8182
chr17	4082235	4082300	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	164770077	164771343	protein_coding	Mmp9	intron	ENSMUSG00000017737	ProperStrand	6	1	-12.4136
chr14	47321837	47321914	LINE	L1MB4	L1	chr14L1MB447321792	NonProperStrand	1	chr14	47321660	47321719	LTR	MTC	MaLR	chr14MTC47321394	ProperStrand	1	1	-inf
chr4	62657856	62657875	protein_coding	Zfp618	intron	ENSMUSG00000028358	ProperStrand	65	chr13	97190545	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.9672
chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr4	155158027	155158063	protein_coding	Tmem88b	utr3	ENSMUSG00000073680	ProperStrand	45	1	-5.6844
chr12	69373945	69374035	LINE	Lx5	L1	chr12Lx569373638	ProperStrand	4	chr12	69374039	69374139	LTR	MTD	MaLR	chr12MTD69374064	NonProperStrand	3	3	-inf
chr2	90395133	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr4	21859098	21859128	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	ProperStrand	29	1	-11.1898
chr1	178337675	178337738	DNA	MER97c	MER1_type?	chr1MER97c178337665	NonProperStrand	5	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr19	45410186	45410257	SINE	B2_Mm1a	B2	chr19B2_Mm1a45410175	NonProperStrand	1	chr19	45408764	45408854	SINE	B2_Mm2	B2	chr19B2_Mm245408638	NonProperStrand	1	1	-inf
chr18	35571872	35571937	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr6	33502968	33503066	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-3.3532
chr17	39846003	39846098	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr16	43933671	43933718	protein_coding	2610015P09Rik	intron	ENSMUSG00000022701	ProperStrand	26	1	-3.4481
chr13	110080621	110080721	protein_coding	Pde4d	intron	ENSMUSG00000021699	NonProperStrand	44	chr12	67660166	67660256	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-12.0696
chr15	99037881	99037974	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	chr14	3855768	3855837	protein_coding	Gm3002	intron	ENSMUSG00000079399	ProperStrand	51	1	-12.4542
chr5	134171913	134172005	LTR	MT2B2	ERVL	chr5MT2B2134171882	NonProperStrand	3	chr5	134171808	134171908	LTR	RMER5	ERV1	chr5RMER5134171618	ProperStrand	1	1	-inf
chr9	118674949	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr4	139130999	139131035	protein_coding	Iffo2	exon	ENSMUSG00000041025	NonProperStrand	59	1	-6.0039
chr14	90126945	90128998	Simple_repeat	(GA)n	Simple_repeat	chr14(GA)n90128929	NonProperStrand	1	chr4	150495088	150495231	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-inf
chr17	39847636	39847658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	43532759	43532896	SINE	B4A	B4	chr10B4A43532750	ProperStrand	2	1	-5.4040
chr17	39848099	39848198	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	67083612	67083629	protein_coding	Aff2	intron	ENSMUSG00000031189	NonProperStrand	7	1	-5.4467
chr19	19535791	19535891	LINE	Lx3_Mus	L1	chr19Lx3_Mus19535252	NonProperStrand	1	chr19	19536144	19536234	Simple_repeat	(GAAA)n	Simple_repeat	chr19(GAAA)n19536140	NonProperStrand	1	1	-inf
chr17	39846131	39846154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	29071310	29071343	protein_coding	Ntng2	intron	ENSMUSG00000035513	NonProperStrand	31	1	-3.1251
chr14	45343725	45348608	LINE	L1_Mur1	L1	chr14L1_Mur145346470	NonProperStrand	3	chr14	45343459	45343674	protein_coding	Gm8267	intron	ENSMUSG00000091923	NonProperStrand	4	1	-inf
chr7	19455286	19455376	LTR	MERVL-int	ERVL	chr7MERVL-int19455285	NonProperStrand	1	chr7	19455046	19455146	LTR	MT2_Mm	ERVL	chr7MT2_Mm19454816	NonProperStrand	1	1	-inf
chr17	39847512	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	120570133	120570258	SINE	B1F2	Alu	chr4B1F2120570093	NonProperStrand	3	2	-8.1061
chr13	84281751	84281851	LINE	L1MD1	L1	chr13L1MD184281771	ProperStrand	2	chr13	84281662	84281752	LTR	ORR1C2	MaLR	chr13ORR1C284281407	ProperStrand	2	2	-inf
chr12	75512866	75512933	LINE	Lx7	L1	chr12Lx775512554	ProperStrand	1	chr11	121628094	121628123	Low_complexity	GA-rich	Low_complexity	chr11GA-rich121628030	NonProperStrand	1	1	-inf
chrX	20412262	20412367	protein_coding	Araf	intron	ENSMUSG00000001127	ProperStrand	7	chr4	53860740	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-13.8538
chr17	39847844	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	128361253	128361359	protein_coding	Itfg2	utr3	ENSMUSG00000001518	ProperStrand	3	1	-4.3512
chr11	61262756	61262850	protein_coding	Rnf112	utr3	ENSMUSG00000010086	ProperStrand	2	chr13	44871419	44871471	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-16.3042
chr11	65158260	65158290	lincRNA	Gm12295	intron	ENSMUSG00000085162	ProperStrand	128	chr7	133088587	133088607	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.7399
chr6	4741640	4741740	LINE	Lx9	L1	chr6Lx94741644	ProperStrand	2	chr6	4741775	4741865	LINE	Lx9	L1	chr6Lx94741786	ProperStrand	2	2	-inf
chr17	39848252	39848291	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	121851488	121851537	protein_coding	1700048O20Rik	intron	ENSMUSG00000043773	NonProperStrand	13	1	-4.1930
chr9	53966551	53966651	LINE	L1Md_F3	L1	chr9L1Md_F353965758	NonProperStrand	1	chr9	53966933	53967022	SINE	ID_B1	B4	chr9ID_B153966956	NonProperStrand	1	1	-inf
chr5	53590682	53627419	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	chr4	86478549	86478618	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-11.1866
chr11	109011675	109011987	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	5379231	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	8	-5.5500
chr12	72769980	72770080	LINE	Lx9	L1	chr12Lx972769993	ProperStrand	3	chr12	72769876	72769966	LTR	RLTR14	ERV1	chr12RLTR1472769622	NonProperStrand	2	2	-inf
chr7	26673441	26673531	LINE	Lx8	L1	chr7Lx826673182	NonProperStrand	1	chr7	26673842	26673942	LINE	Lx9	L1	chr7Lx926673760	NonProperStrand	1	1	-inf
chr9	100908806	100908848	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	chr1	84219854	84219957	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	1	-10.4127
chr12	116279353	116279453	LINE	L1_Mur2	L1	chr12L1_Mur2116279273	NonProperStrand	1	chr12	116279126	116279216	LINE	L1_Mus4	L1	chr12L1_Mus4116278941	ProperStrand	1	1	-inf
chr11	69589856	69590698	protein_coding	Zbtb4	intron	ENSMUSG00000018750	ProperStrand	30	chr2	5379232	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.9007
chr11	92721736	92721836	LINE	Lx6	L1	chr11Lx692721675	NonProperStrand	1	chr11	92721533	92721623	LTR	ORR1B2	MaLR	chr11ORR1B292721476	ProperStrand	1	1	-inf
chr17	39847128	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	33510267	33510289	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n33510225	NonProperStrand	2	1	-6.5615
chr11	115615174	115615274	LTR	MTC	MaLR	chr11MTC115615190	ProperStrand	3	chr11	115615089	115615179	SINE	B1_Mur4	Alu	chr11B1_Mur4115615022	ProperStrand	3	3	-inf
chr6	98960281	98960334	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-7.0107
chr5	135054029	135054119	LINE	L1Md_F2	L1	chr5L1Md_F2135054047	NonProperStrand	1	chr9	123462027	123462127	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	106058764	106058854	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int106058768	NonProperStrand	1	chr3	106058877	106058977	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int106058865	NonProperStrand	1	1	-inf
chr17	39848597	39848669	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	19019694	19019756	LTR	MTD	MaLR	chr7MTD19019663	ProperStrand	1	1	-inf
chr9	48166334	48166378	DNA	Tigger7	MER2_type	chr9Tigger748166207	NonProperStrand	1	chr9	48165702	48165770	SINE	B1_Mur4	Alu	chr9B1_Mur448165700	ProperStrand	1	1	-inf
chr6	3201463	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	34877607	34877628	Simple_repeat	(CATATA)n	Simple_repeat	chr4(CATATA)n34877480	NonProperStrand	1	1	-inf
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr9	56223572	56223672	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-7.8498
chr4	109786112	109786156	LTR	LTR16C	ERVL	chr4LTR16C109786106	ProperStrand	1	chr19	23921057	23921138	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	1	-inf
chr2	167435901	167436001	protein_coding-noncoding	Ube2v1	utr3	ENSMUSG00000078923	NonProperStrand	1	chr2	167435689	167435781	protein_coding	Ube2v1	intron	ENSMUSG00000078923	NonProperStrand	62	1	-inf
chr8	13174881	13174932	protein_coding	Lamp1	utr3	ENSMUSG00000031447	NonProperStrand	11	chr8	13175176	13175224	protein_coding	Grtp1	utr3	ENSMUSG00000038515	ProperStrand	34	1	-16.6542
chrX	87238359	87238404	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr12	82238839	82238952	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	1	-7.3351
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr17	28329463	28330565	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	108	1	-8.6303
chrX	115984202	115984226	LINE	Lx	L1	chrXLx115980838	NonProperStrand	2	chr4	44226493	44226527	protein_coding	Rnf38	intron	ENSMUSG00000035696	ProperStrand	57	2	-inf
chrX	101653337	101653397	LINE	Lx8	L1	chrXLx8101652456	NonProperStrand	6	chrX	101640138	101640182	LTR	ORR1B1	MaLR	chrXORR1B1101640014	ProperStrand	4	1	-inf
chr17	39847810	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	142889849	142889917	protein_coding	Snrpb2	intron	ENSMUSG00000008333	NonProperStrand	2	1	-5.4040
chr17	24020370	24020404	protein_coding	Dcpp2	intron	ENSMUSG00000067843	NonProperStrand	10	chr8	122957238	122957358	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-9.8488
chr16	90507445	90507509	LTR	MER89	ERV1	chr16MER8990507323	NonProperStrand	1	chr16	90507755	90507817	LTR	MTC	MaLR	chr16MTC90507501	ProperStrand	1	1	-inf
chr6	125164300	125164373	DNA	Kanga1d	Tc2	chr6Kanga1d125164279	NonProperStrand	5	chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr17	53508456	53508546	LTR	IAPEz-int	ERVK	chr17IAPEz-int53507911	ProperStrand	1	chr17	53699660	53699760	SINE	B2_Mm2	B2	chr17B2_Mm253699630	NonProperStrand	1	1	-inf
chr17	35910670	35910709	lincRNA	4833427F10Rik	intron	ENSMUSG00000092171	NonProperStrand	10	chrX	106202898	106203297	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	1	-15.4362
chr10	40258579	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr19	8908081	8908171	protein_coding	Hnrnpul2	utr3	ENSMUSG00000071659	ProperStrand	40	1	-6.1537
chr12	69900648	69900738	SINE	B3A	B2	chr12B3A69900657	ProperStrand	1	chr9	123461902	123461954	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	123461903	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	43000205	43000430	protein_coding	Vcp	intron	ENSMUSG00000028452	ProperStrand	37	3	-5.5578
chr9	45563285	45563360	SINE	MIRc	MIR	chr9MIRc45563239	NonProperStrand	3	chr6	146961724	146961789	protein_coding	Ppfibp1	intron	ENSMUSG00000016487	ProperStrand	32	1	-19.1201
chr2	58083752	58083770	LINE	L1_Mus3	L1	chr2L1_Mus358081863	ProperStrand	8	chr17	39846462	39846717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-4.2675
chr16	36793090	36793190	protein_coding	Eaf2	utr3	ENSMUSG00000022838	NonProperStrand	5	chr12	67660707	67660797	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-16.7504
chr5	146261024	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	152837292	152839621	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	2	-7.3192
chr16	33549170	33549277	protein_coding	Slc12a8	intron	ENSMUSG00000035506	ProperStrand	102	chr5	92170767	92173933	pseudogene	Gm15710	.	ENSMUSG00000084111	NonProperStrand	50	1	-11.3235
chr12	111542814	111542839	LTR	RLTRETN_Mm	ERVK	chr12RLTRETN_Mm111542631	NonProperStrand	3	chrX	106202504	106202609	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	1	-17.9778
chr2	25365010	25365055	LTR	MLT1A0	MaLR	chr2MLT1A025364948	ProperStrand	1	chr2	25365054	25365383	SINE	B1_Mus1	Alu	chr2B1_Mus125365257	NonProperStrand	1	1	-inf
chr17	39843591	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr16	56094493	56094577	protein_coding	Senp7	intron	ENSMUSG00000052917	NonProperStrand	16	1	-5.0382
chr2	31082490	31082590	SINE	B1_Mur1	Alu	chr2B1_Mur131082415	NonProperStrand	6	chr2	31082597	31082687	SINE	B1_Mus2	Alu	chr2B1_Mus231082571	NonProperStrand	7	6	-inf
chr17	39846759	39846786	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	66138360	66138397	SINE	B4	B4	chr9B466138189	ProperStrand	1	1	-inf
chr3	75621452	75621469	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr12	78350873	78350900	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.7490
chr10	86845158	86845258	LTR	MLT1H	MaLR	chr10MLT1H86845157	ProperStrand	7	chr10	86845071	86845161	LTR	ORR1A2	MaLR	chr10ORR1A286844831	ProperStrand	7	7	-inf
chr8	39962696	39962796	LINE	Lx9	L1	chr8Lx939962576	ProperStrand	1	chr8	39962375	39962465	LTR	MLT1K	MaLR	chr8MLT1K39962184	ProperStrand	1	1	-inf
chr1	29563197	29563287	LINE	L1_Mus1	L1	chr1L1_Mus129558332	NonProperStrand	1	chr1	29564344	29564444	LINE	L1_Mus1	L1	chr1L1_Mus129563506	NonProperStrand	1	1	-inf
chr11	6392907	6393008	antisense	Gm11973	.	ENSMUSG00000086839	ProperStrand	25	chr11	107308939	107309002	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-10.5021
chr5	29422475	29422575	LINE	L1_Mur2	L1	chr5L1_Mur229421916	NonProperStrand	1	chr5	29422918	29423008	LTR	MT2C_Mm	ERVL	chr5MT2C_Mm29422666	NonProperStrand	1	1	-inf
chr7	65422110	65422209	LTR	MERVL-int	ERVL	chr7MERVL-int65416973	NonProperStrand	3	chr7	73932236	73932326	protein_coding	Lass3	intron	ENSMUSG00000030510	ProperStrand	9	1	-21.6921
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-11.6361
chr7	4794144	4794175	processed_transcript	Gm15525	.	ENSMUSG00000084815	NonProperStrand	48	chr14	78970758	78970779	protein_coding	Dgkh	intron	ENSMUSG00000034731	NonProperStrand	61	1	-12.4392
chr18	33924839	33924929	LTR	MTD	MaLR	chr18MTD33924857	NonProperStrand	6	chr18	33924729	33924829	Simple_repeat	(GAAA)n	Simple_repeat	chr18(GAAA)n33924680	NonProperStrand	6	6	-inf
chr4	134668328	134668367	LINE	HAL1	L1	chr4HAL1134668318	NonProperStrand	1	chr3	121457167	121457196	LTR	RLTR13D6	ERVK	chr3RLTR13D6121456967	ProperStrand	2	1	-inf
chr6	71882556	71882656	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	chr10	19849496	19849586	protein_coding	Map3k5	intron	ENSMUSG00000071369	NonProperStrand	6	1	-15.2793
chr6	3201473	3201509	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	43935371	43935397	protein_coding	Reck	intron	ENSMUSG00000028476	ProperStrand	19	1	-5.0638
chr17	39846411	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	136364886	136365015	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	19	-6.8507
chr17	21016102	21016185	LINE	L1_Mur2	L1	chr17L1_Mur221015821	ProperStrand	1	chr17	39846462	39846490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	54691097	54691197	protein_coding-noncoding	Nop16	utr3	ENSMUSG00000025869	ProperStrand	5	chr13	54691205	54691295	protein_coding	Nop16	intron	ENSMUSG00000025869	ProperStrand	15	5	-inf
chr15	25660875	25660922	protein_coding	Myo10	intron	ENSMUSG00000022272	ProperStrand	120	chr7	118755139	118755176	protein_coding	Galntl4	intron	ENSMUSG00000038296	NonProperStrand	80	1	-10.0523
chr12	69157765	69157799	LINE	L1M4b	L1	chr12L1M4b69157494	NonProperStrand	2	chr2	176700829	176700935	protein_coding	Gm14296	utr3	ENSMUSG00000074527	NonProperStrand	7	1	-21.1088
chr12	59131445	59131462	LINE	L1M3	L1	chr12L1M359130911	NonProperStrand	1	chr16	20234139	20234155	protein_coding	Map6d1	utr3	ENSMUSG00000041205	ProperStrand	2	1	-inf
chr13	25932618	25932718	LINE	L1_Mus4	L1	chr13L1_Mus425932530	NonProperStrand	1	chr13	25932186	25932276	LTR	RLTR13C2	ERVK	chr13RLTR13C225931974	ProperStrand	1	1	-inf
chr16	96685351	96685368	protein_coding	Igsf5	intron	ENSMUSG00000000159	ProperStrand	1	chr9	123461848	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	78783937	78784037	LTR	RMER6D	ERVK	chr16RMER6D78783414	ProperStrand	1	chr16	78794000	78794090	SINE	B4	B4	chr16B478793859	ProperStrand	1	1	-inf
chr17	39847249	39847266	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	70714162	70716677	lincRNA	Gm13632	intron	ENSMUSG00000085868	NonProperStrand	6	1	-3.9545
chr7	58746944	58747044	LINE	L1_Mur2	L1	chr7L1_Mur258746930	ProperStrand	1	chr7	58746775	58746865	LTR	IAPLTR2a	ERVK	chr7IAPLTR2a58746557	NonProperStrand	1	1	-inf
chr15	76906165	76906218	SINE	B1_Mur1	Alu	chr15B1_Mur176906120	ProperStrand	10	chr13	97190561	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.7312
chr17	39846932	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	91517051	91517113	LTR	MTD	MaLR	chr6MTD91516985	NonProperStrand	2	1	-5.3533
chr12	52304547	52304615	LINE	Lx5	L1	chr12Lx552304091	ProperStrand	1	chr17	39847666	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	29957078	29957128	SINE	B2_Mm2	B2	chr13B2_Mm229957042	NonProperStrand	14	chr9	123461802	123461878	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr17	39847531	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	107753289	107753328	protein_coding	Cacng5	intron	ENSMUSG00000040373	NonProperStrand	2	1	-5.4040
chr6	3201454	3201507	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	70598209	70598556	SINE	PB1	Alu	chr8PB170598177	NonProperStrand	1	1	-inf
chr2	122028882	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	chr9	64242559	64242686	protein_coding	Megf11	intron	ENSMUSG00000036466	NonProperStrand	40	1	-13.7127
chrX	139027502	139027523	LTR	MLT1F2	MaLR	chrXMLT1F2139027381	ProperStrand	1	chr11	20063723	20063794	SINE	B1_Mus1	Alu	chr11B1_Mus120063653	NonProperStrand	2	1	-inf
chr14	107299229	107299329	LINE	L1MA9	L1	chr14L1MA9107299241	NonProperStrand	1	chr14	107298876	107298966	LTR	RMER15	ERVL	chr14RMER15107298878	ProperStrand	1	1	-inf
chr7	28922995	28925487	protein_coding-noncoding	9530053A07Rik	utr5	ENSMUSG00000078776	NonProperStrand	6	chr7	28921529	28932854	protein_coding	9530053A07Rik	exon	ENSMUSG00000078776	NonProperStrand	96	5	-inf
chr17	50420131	50420172	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr13	98841828	98841931	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	1	-8.2494
chr11	109667563	109667666	protein_coding	1700012B07Rik	intron	ENSMUSG00000020617	NonProperStrand	12	chr16	85084054	85084088	protein_coding	App	intron	ENSMUSG00000022892	ProperStrand	60	1	-15.3205
chr13	48815559	48815609	LINE	Lx8	L1	chr13Lx848815312	NonProperStrand	1	chr17	39848507	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chrX	113185458	113185504	SINE	PB1D10	Alu	chrXPB1D10113185431	NonProperStrand	1	chr12	79340014	79340067	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr17	39847659	39847713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	71453629	71453726	SINE	B4	B4	chr2B471453632	NonProperStrand	1	1	-inf
chr6	35211406	35211539	lincRNA	1810058I24Rik	exon	ENSMUSG00000073155	ProperStrand	16	chr16	72867729	72867754	protein_coding	Robo1	intron	ENSMUSG00000022883	ProperStrand	177	2	-20.0272
chr5	77285569	77285644	protein_coding	C530008M17Rik	exon	ENSMUSG00000036377	ProperStrand	184	chr8	68721801	68721819	protein_coding	March1	intron	ENSMUSG00000036469	ProperStrand	80	1	-9.1977
chr1	100180180	100180215	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr13	97190552	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-6.4609
chr5	136453973	136454064	SINE	B1F	Alu	chr5B1F136453957	NonProperStrand	1	chr5	136466110	136466179	SINE	RSINE1	B4	chr5RSINE1136466076	NonProperStrand	1	1	-inf
chr11	49126056	49126146	LINE	L1VL4	L1	chr11L1VL449125992	ProperStrand	1	chr11	49125735	49125835	SINE	B1_Mm	Alu	chr11B1_Mm49125726	ProperStrand	1	1	-inf
chr18	61587126	61587240	LINE	L1_Rod	L1	chr18L1_Rod61587124	NonProperStrand	3	chr18	61586857	61587132	LINE	Lx9	L1	chr18Lx961586011	NonProperStrand	7	3	-inf
chr8	23416867	23416915	protein_coding	Tpte	intron	ENSMUSG00000031481	ProperStrand	62	chr8	107662587	107662681	protein_coding	Ces4a	intron	ENSMUSG00000060560	NonProperStrand	48	1	-12.4073
chr15	80083295	80083347	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr18	12147832	12147907	protein_coding	6030446N20Rik	intron	ENSMUSG00000049411	NonProperStrand	18	1	-10.5246
chr6	130510678	130510778	LTR	RMER15	ERVL	chr6RMER15130510703	NonProperStrand	1	chr9	25382669	25382759	protein_coding	Eepd1	intron	ENSMUSG00000036611	NonProperStrand	2	1	-inf
chr7	84647196	84647309	LINE	L1Md_F3	L1	chr7L1Md_F384647067	NonProperStrand	1	chr7	84637171	84637201	LINE	L1_Mur2	L1	chr7L1_Mur284637131	NonProperStrand	1	1	-inf
chr17	39847281	39847345	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	142200980	142201028	SINE	B4	B4	chr4B4142200989	NonProperStrand	1	1	-inf
chr7	49802564	49802654	LTR	ORR1C1	MaLR	chr7ORR1C149802539	NonProperStrand	1	chr7	49802692	49802792	SINE	B1_Mm	Alu	chr7B1_Mm49802684	ProperStrand	2	1	-inf
chr2	82075638	82075728	protein_coding-noncoding	Zfp804a	utr5	ENSMUSG00000070866	ProperStrand	1	chr2	82075989	82076089	protein_coding	Zfp804a	exon	ENSMUSG00000070866	ProperStrand	7	1	-inf
chr7	112750602	112750623	LTR	RLTR11B	ERVK	chr7RLTR11B112750340	ProperStrand	1	chr7	112721414	112721486	protein_coding	Apbb1	intron	ENSMUSG00000037032	NonProperStrand	51	1	-inf
chr14	27829223	27829313	SINE	B1_Mus2	Alu	chr14B1_Mus227829206	NonProperStrand	1	chr14	27829086	27829186	SINE	ID_B1	B4	chr14ID_B127829103	NonProperStrand	1	1	-inf
chr17	87701141	87701254	protein_coding	Ttc7	intron	ENSMUSG00000036918	ProperStrand	70	chr5	145165520	145166958	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	1	-10.8100
chr6	120270277	120270352	LINE	Lx	L1	chr6Lx120270187	NonProperStrand	1	chr17	39846512	39846726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	75780586	75780686	protein_coding	Dip2a	intron	ENSMUSG00000020231	ProperStrand	98	chr4	119135886	119136289	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-6.7580
chr17	39847159	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	83149640	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	10	-4.1179
chr2	20541738	20541787	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	chr7	140969517	140969583	protein_coding	Fank1	intron	ENSMUSG00000053111	ProperStrand	73	1	-8.2537
chr1	180215934	180216024	LTR	LTRIS4	ERV1	chr1LTRIS4180215877	ProperStrand	1	chr1	180215554	180215654	LTR	RMER16-int	ERVK	chr1RMER16-int180215452	ProperStrand	1	1	-inf
chr17	39847734	39847757	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	136771500	136771595	SINE	ID_B1	B4	chr4ID_B1136771512	NonProperStrand	2	1	-5.4040
chr8	31150643	31150707	LINE	L1Md_T	L1	chr8L1Md_T31146388	ProperStrand	1	chr13	97485149	97485224	LTR	RLTR45	ERVK	chr13RLTR4597485142	NonProperStrand	27	1	-inf
chr16	18082247	18082337	protein_coding-noncoding	Prodh	utr3	ENSMUSG00000003526	ProperStrand	3	chr16	18082117	18082217	protein_coding	Prodh	intron	ENSMUSG00000003526	ProperStrand	57	3	-inf
chr17	39846462	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	160128547	160130110	SINE	B3	B2	chrXB3160129369	NonProperStrand	1	1	-inf
chr12	78350927	78351018	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	125311518	125311618	protein_coding	Dnahc10	intron	ENSMUSG00000038011	NonProperStrand	81	1	-5.3092
chrX	36795652	36797283	LINE	L1Md_F2	L1	chrXL1Md_F236792266	NonProperStrand	41	chr17	39847341	39848037	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	9	-8.1153
chr9	50657982	50658206	protein_coding	Ppp2r1b	intron	ENSMUSG00000032058	NonProperStrand	7	chr18	34607245	34607313	protein_coding	Fam13b	intron	ENSMUSG00000036501	ProperStrand	59	1	-16.5217
chr11	74534530	74534587	protein_coding	Pafah1b1	intron	ENSMUSG00000020745	ProperStrand	23	chr13	44869601	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.3731
chr2	150285628	150285677	LINE	L1Md_F3	L1	chr2L1Md_F3150285433	NonProperStrand	4	chr2	150295176	150295250	pseudogene	Gm14127	.	ENSMUSG00000082740	NonProperStrand	3	1	-inf
chr18	35554489	35554579	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr18	61298285	61298385	protein_coding	Hmgxb3	intron	ENSMUSG00000024622	ProperStrand	18	1	-10.8530
chr17	39848182	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	36580249	36580342	Simple_repeat	(GGGA)n	Simple_repeat	chr15(GGGA)n36580261	NonProperStrand	1	1	-inf
chr15	59063328	59063346	LTR	RLTR19	ERVK	chr15RLTR1959063078	NonProperStrand	2	chr8	79753208	79753351	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	1	-17.7990
chr7	19556304	19556400	SINE	B1_Mur1	Alu	chr7B1_Mur119556245	ProperStrand	2	chr9	123461959	123461995	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr17	45408036	45408360	LINE	Lx8	L1	chr17Lx845408201	NonProperStrand	1	chr7	65331520	65331543	LINE	L1Md_T	L1	chr7L1Md_T65326087	NonProperStrand	4	1	-inf
chr1	179299535	179299635	LINE	L1MA4A	L1	chr1L1MA4A179299559	ProperStrand	1	chr1	179299676	179299766	SINE	RSINE1	B4	chr1RSINE1179299665	ProperStrand	1	1	-inf
chr4	99754717	99754807	LINE	L1_Mus1	L1	chr4L1_Mus199754677	ProperStrand	1	chr1	152727257	152727357	protein_coding	Hmcn1	intron	ENSMUSG00000066842	NonProperStrand	30	1	-inf
chr1	183152966	183153066	SINE	B3	B2	chr1B3183152914	ProperStrand	1	chr1	183153160	183153250	SINE	ID_B1	B4	chr1ID_B1183153115	ProperStrand	1	1	-inf
chr7	3220883	3220941	SINE	B3	B2	chr7B33220872	NonProperStrand	2	chr11	33334074	33334142	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-14.9017
chr1	119378729	119378802	LINE	L1Md_T	L1	chr1L1Md_T119377918	ProperStrand	1	chr7	133058361	133058436	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr9	77975713	77975813	protein_coding	Ick	intron	ENSMUSG00000009828	ProperStrand	24	chr2	11593455	11595411	protein_coding	Il2ra	intron	ENSMUSG00000026770	NonProperStrand	21	1	-16.0172
chr8	82911151	82911241	LTR	ORR1A4	MaLR	chr8ORR1A482910958	ProperStrand	1	chr8	82911405	82911505	LTR	RMER10A	ERVL	chr8RMER10A82911403	NonProperStrand	1	1	-inf
chr7	142377141	142377393	Low_complexity	CT-rich	Low_complexity	chr7CT-rich142377313	NonProperStrand	7	chr7	142377037	142377137	Simple_repeat	(TCTCCC)n	Simple_repeat	chr7(TCTCCC)n142377033	NonProperStrand	10	7	-inf
chr6	33763042	33763085	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr5	110866975	110868029	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	NonProperStrand	38	2	-12.3747
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr7	19846022	19846133	protein_coding	Vasp	intron	ENSMUSG00000030403	NonProperStrand	1	1	-inf
chr17	39847671	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	25509203	25509274	protein_coding	Gm4763	intron	ENSMUSG00000058717	NonProperStrand	3	1	-4.3512
chr9	40803599	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr12	41398381	41398423	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	2	-6.9352
chr2	30071423	30071489	LINE	L1M5	L1	chr2L1M530071423	ProperStrand	8	chr9	46212682	46212724	LINE	L1MDb	L1	chr9L1MDb46212663	NonProperStrand	1	1	-inf
chr2	90962971	90963029	protein_coding	Mybpc3	intron	ENSMUSG00000002100	ProperStrand	18	chr18	35614964	35615011	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	2	-17.1006
chr9	115164253	115164390	protein_coding	Stt3b	intron	ENSMUSG00000032437	NonProperStrand	44	chr1	102328622	102328644	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	ProperStrand	27	1	-14.2635
chr2	62754630	62754648	protein_coding	Kcnh7	intron	ENSMUSG00000059742	NonProperStrand	29	chr8	95732086	95732224	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-13.6674
chr1	168868686	168868776	LINE	L1MA5	L1	chr1L1MA5168868674	ProperStrand	1	chr1	168868324	168868424	LTR	MTB	MaLR	chr1MTB168868066	ProperStrand	1	1	-inf
chr8	93857657	93857698	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	chr18	53694934	53695051	protein_coding	Prdm6	intron	ENSMUSG00000069378	NonProperStrand	20	1	-12.6226
chr5	114852004	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr17	30397202	30513427	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	2	-7.6057
chr13	94806437	94806464	SINE	B1F	Alu	chr13B1F94806349	ProperStrand	1	chr4	149120030	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr1	100180182	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.6569
chr17	78308193	78308212	LINE	Lx5	L1	chr17Lx578307437	NonProperStrand	1	chr3	137864595	137865165	LINE	L1Md_A	L1	chr3L1Md_A137863249	NonProperStrand	43	1	-inf
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr17	56337941	56338057	protein_coding	Dpp9	intron	ENSMUSG00000001229	NonProperStrand	214	1	-9.8399
chr7	80199002	80199092	LINE	L1Md_T	L1	chr7L1Md_T80194660	ProperStrand	12	chr7	80199126	80199226	LINE	L1Md_T	L1	chr7L1Md_T80199077	ProperStrand	5	1	-inf
chr15	98736611	98739101	protein_coding-noncoding	Lmbr1l	utr3	ENSMUSG00000022999	ProperStrand	9	chr15	98736731	98738859	protein_coding	Lmbr1l	intron	ENSMUSG00000022999	ProperStrand	55	6	-20.5212
chr9	123462082	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	147396553	147396608	protein_coding	Clcn6	intron	ENSMUSG00000029016	NonProperStrand	13	1	-3.8693
chr7	27483468	27483580	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int27482786	ProperStrand	3	chr9	123462134	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr2	31980933	31980983	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n31980930	ProperStrand	1	chr8	91095293	91095381	protein_coding	Nkd1	intron	ENSMUSG00000031661	ProperStrand	33	1	-inf
chr16	43041752	43041785	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr2	155980767	155980790	protein_coding	Rbm39	intron	ENSMUSG00000027620	ProperStrand	1	1	-inf
chr17	39847445	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	62551460	62551550	SINE	B1_Mus2	Alu	chr13B1_Mus262551452	ProperStrand	2	2	-inf
chr6	115844112	115844615	protein_coding-noncoding	Ift122	utr5	ENSMUSG00000030323	NonProperStrand	1	chr6	115844676	115845360	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-inf
chr7	135197091	135197191	LINE	Lx8	L1	chr7Lx8135197094	NonProperStrand	1	chr7	135197206	135197296	LTR	MTEa	MaLR	chr7MTEa135197210	ProperStrand	1	1	-inf
chr5	146260995	146261033	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr14	60209824	60209909	protein_coding	Cdadc1	intron	ENSMUSG00000021982	ProperStrand	6	1	-9.7631
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	chr6	65789841	65789961	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-10.2297
chr19	23182780	23182810	LTR	RMER15	ERVL	chr19RMER1523182705	ProperStrand	1	chr5	31177390	31177512	protein_coding-noncoding	Tmem214	utr5	ENSMUSG00000038828	NonProperStrand	14	1	-inf
chr9	45573500	45573560	LTR	MT2B	ERVL	chr9MT2B45573509	ProperStrand	2	chr9	45580840	45580929	protein_coding	Cep164	intron	ENSMUSG00000043987	NonProperStrand	25	1	-inf
chr15	76392156	76392256	LTR	RLTR4_MM-int	ERV1	chr15RLTR4_MM-int76390943	NonProperStrand	4	chr17	39847725	39847815	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr17	39846952	39846993	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	120402761	120404012	protein_coding	Snap23	intron	ENSMUSG00000027287	NonProperStrand	3	1	-4.3017
chr18	31636058	31647099	LINE	L1Md_F3	L1	chr18L1Md_F331645602	NonProperStrand	9	chr18	31634453	31636035	LTR	RLTR9E	ERVK	chr18RLTR9E31635920	ProperStrand	6	5	-inf
chr13	63943579	63943700	protein_coding	0610007P08Rik	intron	ENSMUSG00000021470	NonProperStrand	8	chr5	129608012	129608028	protein_coding	Gpr133	intron	ENSMUSG00000044017	ProperStrand	9	1	-23.8657
chr3	110664681	110664771	LTR	MT2_Mm	ERVL	chr3MT2_Mm110664613	ProperStrand	1	chr3	110664534	110664634	SINE	B1_Mur2	Alu	chr3B1_Mur2110664533	ProperStrand	1	1	-inf
chr11	109011656	109011705	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	165844984	165845097	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	1	-3.0720
chr17	87697499	87724512	protein_coding	Ttc7	intron	ENSMUSG00000036918	ProperStrand	70	chr15	74670909	74671352	protein_coding	Cyp11b1	exon	ENSMUSG00000075604	ProperStrand	10	2	-21.9176
chr14	95739353	95739453	LINE	Lx6	L1	chr14Lx695739219	NonProperStrand	1	chr14	95739619	95739709	LTR	RMER20A	ERVK	chr14RMER20A95739464	ProperStrand	1	1	-inf
chr17	39847253	39847329	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	4940366	4940432	protein_coding	Nudt16l1	utr3	ENSMUSG00000022516	ProperStrand	7	1	-3.6430
chr3	67612606	67612622	LINE	Lx7	L1	chr3Lx767612583	ProperStrand	3	chr17	39846747	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr5	146260994	146261057	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	7946858	7946931	protein_coding	Yap1	intron	ENSMUSG00000053110	ProperStrand	74	1	-4.6582
chr6	99113889	99113955	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	chrX	103299377	103299462	protein_coding	Atp7a	intron	ENSMUSG00000033792	NonProperStrand	68	1	-9.8663
chr15	85240131	85240172	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr12	16940464	16940534	protein_coding	Rock2	intron	ENSMUSG00000020580	ProperStrand	46	1	-9.8379
chr1	185428001	185428066	LINE	L1MEg	L1	chr1L1MEg185427860	NonProperStrand	8	chr17	39847174	39847214	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr5	115490289	115490377	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr1	22594098	22596380	protein_coding	Rims1	intron	ENSMUSG00000041670	ProperStrand	21	1	-11.2803
chr1	191121128	191121171	protein_coding	Kcnk2	intron	ENSMUSG00000037624	NonProperStrand	64	chr13	8767066	8767139	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	1	-12.6131
chr2	54226393	54226483	LINE	L1Md_F2	L1	chr2L1Md_F254222084	NonProperStrand	1	chr2	54644796	54644896	protein_coding	Galnt13	intron	ENSMUSG00000060988	NonProperStrand	18	1	-inf
chr8	86731493	86731593	SINE	B1F	Alu	chr8B1F86731474	ProperStrand	1	chr8	86731626	86731716	SINE	B4	B4	chr8B486731490	ProperStrand	1	1	-inf
chr6	48556453	48556503	LTR	ORR1A1-int	MaLR	chr6ORR1A1-int48556265	ProperStrand	1	chr13	97190563	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	4082215	4082244	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr1	131573995	131574034	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-4.6701
chr17	39847611	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	36489864	36489930	protein_coding	Lman2l	intron	ENSMUSG00000001143	NonProperStrand	5	1	-3.2379
chr17	23176254	23176272	SINE	B3A	B2	chr17B3A23176198	ProperStrand	1	chr11	115671933	115672049	protein_coding	Caskin2	intron	ENSMUSG00000034471	ProperStrand	36	1	-inf
chr6	71414879	71414915	SINE	ID_B1	B4	chr6ID_B171414797	NonProperStrand	1	chr9	123462016	123462062	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	70266764	70266864	LTR	RMER4A	ERVK	chr12RMER4A70266535	ProperStrand	2	chr12	70266912	70267002	SINE	B2_Mm2	B2	chr12B2_Mm270266855	ProperStrand	1	1	-inf
chr11	6473899	6473946	protein_coding	Ccm2	intron	ENSMUSG00000000378	NonProperStrand	28	chr10	123101842	123101905	protein_coding	Fam19a2	intron	ENSMUSG00000044071	NonProperStrand	176	1	-11.4041
chr15	59046220	59046291	LTR	MTEb	MaLR	chr15MTEb59046210	NonProperStrand	6	chr9	123461992	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr10	37779534	37779634	LTR	IAP-d-int	ERVK	chr10IAP-d-int37779389	NonProperStrand	1	chr10	37779691	37779781	LTR	IAP-d-int	ERVK	chr10IAP-d-int37779558	NonProperStrand	1	1	-inf
chr11	19938190	19938214	SINE	B3	B2	chr11B319938139	NonProperStrand	1	chr11	19930290	19930375	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n19930262	ProperStrand	2	1	-inf
chr8	86843955	86844025	LTR	RMER19B	ERVK	chr8RMER19B86843551	ProperStrand	11	chr15	81683113	81683193	protein_coding	Tob2	intron	ENSMUSG00000048546	NonProperStrand	31	1	-16.8340
chr11	116023669	116023885	protein_coding-noncoding	Fbf1	utr3	ENSMUSG00000020776	ProperStrand	13	chr11	86769520	86769542	protein_coding	Ypel2	intron	ENSMUSG00000018427	ProperStrand	11	1	-18.7120
chr8	114978344	114978372	LINE	L1_Mm	L1	chr8L1_Mm114978330	NonProperStrand	4	chr2	69795826	69795864	protein_coding	Ubr3	intron	ENSMUSG00000044308	ProperStrand	27	1	-19.4870
chr9	108562287	108562305	SINE	B2_Mm1a	B2	chr9B2_Mm1a108562216	ProperStrand	8	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr10	88408494	88408594	LINE	Lx6	L1	chr10Lx688407933	ProperStrand	1	chr10	89360540	89360630	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	65	1	-inf
chr6	23110291	23110381	LTR	MT2B2	ERVL	chr6MT2B223110089	ProperStrand	1	chr6	23109789	23109889	pseudogene	Gm5989	.	ENSMUSG00000071564	ProperStrand	1	1	-inf
chr8	82758607	82758707	LINE	L1MA4	L1	chr8L1MA482758054	NonProperStrand	1	chr8	82758797	82758887	Simple_repeat	(GAAA)n	Simple_repeat	chr8(GAAA)n82758727	NonProperStrand	1	1	-inf
chr2	107919221	107919321	LINE	L1_Mus3	L1	chr2L1_Mus3107918443	NonProperStrand	1	chr19	16595977	16596067	protein_coding	Gna14	intron	ENSMUSG00000024697	NonProperStrand	25	1	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	132270126	132270186	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-6.6911
chr11	62604545	62604587	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr18	25355956	25356012	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	1	-13.2916
chr17	70963681	70963781	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr1	152840379	152840469	protein_coding	Hmcn1	utr5	ENSMUSG00000066842	ProperStrand	85	1	-5.5239
chr10	82008500	82008600	LINE	L1_Mus3	L1	chr10L1_Mus382007519	NonProperStrand	1	chr11	78181512	78182811	protein_coding	Foxn1	intron	ENSMUSG00000002057	NonProperStrand	7	1	-inf
chr17	46425206	46425279	SINE	ID_B1	B4	chr17ID_B146425213	NonProperStrand	3	chr17	46425574	46425657	SINE	ID_B1	B4	chr17ID_B146425413	NonProperStrand	3	3	-inf
chr17	50420128	50420174	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr7	127590704	127591385	protein_coding	Abca16	intron	ENSMUSG00000051900	ProperStrand	96	1	-9.0025
chr3	98320649	98320716	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int98320135	NonProperStrand	12	chr13	97190552	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.3508
chrX	68716195	68716227	antisense	Gm16189	.	ENSMUSG00000085284	ProperStrand	10	chr6	87089494	87089522	protein_coding	Antxr1	intron	ENSMUSG00000033420	NonProperStrand	10	1	-19.1789
chr17	53416990	53417090	LINE	L1Md_T	L1	chr17L1Md_T53413333	ProperStrand	1	chrX	67357582	67357672	LINE	L1Md_T	L1	chrXL1Md_T67356332	NonProperStrand	1	1	-inf
chr4	135546964	135547020	LTR	MLT1F	MaLR	chr4MLT1F135546934	NonProperStrand	1	chr4	135554784	135554848	LTR	MurERV4-int	ERVK	chr4MurERV4-int135554392	ProperStrand	1	1	-inf
chr17	39848498	39848558	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr6	149315616	149315686	LINE	Lx4B	L1	chr6Lx4B149315630	NonProperStrand	1	1	-inf
chr17	23843496	23843596	processed_transcript	1520401A03Rik	.	ENSMUSG00000043747	ProperStrand	9	chr13	44869928	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.2984
chr11	61427868	61427887	LINE	Lx7	L1	chr11Lx761427784	ProperStrand	8	chr17	39847207	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr10	80279203	80279287	LTR	RLTR20A2	ERVK	chr10RLTR20A280279197	NonProperStrand	1	chr17	39846415	39846489	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	47188373	47188463	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	chrX	19648704	19648804	protein_coding	Chst7	intron	ENSMUSG00000037347	NonProperStrand	1	1	-inf
chr14	50466164	50466205	LINE	L1Md_F2	L1	chr14L1Md_F250464365	NonProperStrand	3	chr17	39847243	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr4	98577132	98577232	LTR	MTD	MaLR	chr4MTD98576991	NonProperStrand	1	chr4	98577572	98577662	LTR	RMER2	ERV1	chr4RMER298577321	NonProperStrand	1	1	-inf
chr13	21982765	21982865	LINE	L1Md_F2	L1	chr13L1Md_F221982561	ProperStrand	1	chr13	21982305	21982395	LTR	ERVL-E-int	ERVL	chr13ERVL-E-int21982125	ProperStrand	1	1	-inf
chr1	131573829	131573872	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	chr3	153308163	153308216	protein_coding	St6galnac3	intron	ENSMUSG00000052544	ProperStrand	282	1	-5.8969
chr17	39847257	39847289	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	32097223	32097265	LTR	ORR1B2	MaLR	chr9ORR1B232096875	ProperStrand	2	1	-6.5615
chr1	138582301	138582401	SINE	B1_Mur1	Alu	chr1B1_Mur1138582296	ProperStrand	3	chr1	138582400	138582490	SINE	ID_B1	B4	chr1ID_B1138582426	ProperStrand	3	3	-inf
chr1	179365273	179365316	lincRNA	Gm17407	intron	ENSMUSG00000078909	ProperStrand	35	chr11	12249745	12249839	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-10.1326
chrX	103546161	103546251	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	ProperStrand	7	chr6	33282237	33282337	protein_coding	Exoc4	exon	ENSMUSG00000029763	ProperStrand	817	2	-17.8465
chr13	111791602	111791692	LTR	MLT1A0	MaLR	chr13MLT1A0111791407	ProperStrand	7	chr11	78180955	78181211	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	1	-15.5399
chr12	25385973	25386063	LTR	MTD	MaLR	chr12MTD25385885	NonProperStrand	1	chr12	25385719	25385819	SINE	B3A	B2	chr12B3A25385656	NonProperStrand	1	1	-inf
chr17	39846720	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	128563074	128563091	Simple_repeat	(TTAA)n	Simple_repeat	chr10(TTAA)n128563065	NonProperStrand	1	1	-inf
chr18	76330325	76330415	LTR	ORR1A0	MaLR	chr18ORR1A076330282	ProperStrand	1	chr18	76330670	76330770	SINE	B1F1	Alu	chr18B1F176330664	ProperStrand	1	1	-inf
chr3	114439909	114439927	LINE	Lx3B	L1	chr3Lx3B114439740	NonProperStrand	1	chr17	39847611	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	58985159	58986120	LINE	L1Md_F2	L1	chr12L1Md_F258981805	ProperStrand	1	chr4	152823321	152823337	protein_coding	Ajap1	intron	ENSMUSG00000039546	NonProperStrand	6	1	-inf
chr16	14049122	14049236	protein_coding	2900011O08Rik	intron	ENSMUSG00000044117	ProperStrand	41	chr17	20367282	20367299	protein_coding	Vmn2r105	intron	ENSMUSG00000091670	ProperStrand	2	1	-20.3452
chr2	20914683	20914794	LTR	ORR1D1-int	MaLR	chr2ORR1D1-int20914687	ProperStrand	5	chr2	20914789	20967427	pseudogene	Gm13377	.	ENSMUSG00000086821	ProperStrand	14	5	-inf
chrX	134066331	134069865	LINE	L1Md_F2	L1	chrXL1Md_F2134066309	NonProperStrand	1	chr17	39846488	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	150986105	150986131	LINE	Lx4B	L1	chrXLx4B150985369	NonProperStrand	1	chr8	122614334	122614350	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-inf
chr14	48999891	48999981	LINE	L1_Mur3	L1	chr14L1_Mur348998851	ProperStrand	1	chr14	49000078	49000178	LINE	Lx9	L1	chr14Lx949000003	ProperStrand	1	1	-inf
chr10	100039490	100039539	protein_coding	4930430F08Rik	intron	ENSMUSG00000046567	NonProperStrand	3	chr4	106931421	106931535	protein_coding	Hspb11	intron	ENSMUSG00000063172	ProperStrand	93	2	-inf
chrX	162412163	162412277	LINE	Lx7	L1	chrXLx7162410687	ProperStrand	1	chr17	39847381	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847665	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	70298494	70298527	Low_complexity	GA-rich	Low_complexity	chr4GA-rich70298354	NonProperStrand	1	1	-inf
chr5	146261018	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	110808845	110808927	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	ProperStrand	131	1	-3.5834
chr17	32048630	32048738	LINE	L1MB5	L1	chr17L1MB532048650	ProperStrand	1	chr17	32042319	32042344	LTR	MTB	MaLR	chr17MTB32042077	NonProperStrand	1	1	-inf
chr17	46018299	46018376	DNA	URR1A	MER1_type	chr17URR1A46018246	ProperStrand	6	chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-11.5504
chr6	22810422	22810512	LINE	L1_Mus1	L1	chr6L1_Mus122810337	ProperStrand	1	chr6	22810184	22810284	LINE	Lx5	L1	chr6Lx522809899	ProperStrand	1	1	-inf
chr13	44856687	44856783	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	chr13	52597050	52610807	protein_coding	Diras2	intron	ENSMUSG00000047842	ProperStrand	2	1	-16.2996
chr2	180734542	180734615	protein_coding	Col20a1	intron	ENSMUSG00000016356	ProperStrand	42	chr13	97190549	97190603	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8202
chr13	111800829	111800904	LINE	L1_Mus1	L1	chr13L1_Mus1111794864	NonProperStrand	42	chr11	76379115	76379180	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	1	-10.0214
chr17	39848717	39848802	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	28916387	28916460	protein_coding	Ttf1	intron	ENSMUSG00000026803	ProperStrand	20	2	-6.2053
chr13	90085165	90085248	protein_coding	Xrcc4	intron	ENSMUSG00000021615	ProperStrand	57	chr2	5379293	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.6466
chr7	12930796	12930842	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr6	33606186	33606291	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-6.2442
chr13	30148343	30148405	LTR	ORR1B1	MaLR	chr13ORR1B130148088	ProperStrand	1	chr17	39847343	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	50730289	50730379	LINE	Lx7	L1	chr15Lx750730306	ProperStrand	5	chr15	50730190	50730290	LTR	RMER17C	ERVK	chr15RMER17C50730153	ProperStrand	3	2	-inf
chr17	39848252	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	81180033	81180055	SINE	B2_Mm1t	B2	chr10B2_Mm1t81179917	NonProperStrand	5	1	-6.1691
chr12	54696806	54696896	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr4	117153863	117153963	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-7.6101
chr8	124858881	124858998	protein_coding	Zfpm1	intron	ENSMUSG00000049577	NonProperStrand	51	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.9540
chr5	25383748	25383838	LTR	MT2B2	ERVL	chr5MT2B225383680	ProperStrand	6	chr5	25383646	25383746	SINE	ID_B1	B4	chr5ID_B125383654	ProperStrand	9	5	-inf
chr5	113848544	113848560	DNA	MER2	MER2_type	chr5MER2113848446	ProperStrand	1	chr10	45165578	45165667	protein_coding	Lin28b	intron	ENSMUSG00000063804	NonProperStrand	73	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr5	92811714	92811826	protein_coding	Art3	intron	ENSMUSG00000034842	ProperStrand	42	1	-11.3165
chr9	90235566	90235666	LINE	L1Md_F2	L1	chr9L1Md_F290233279	ProperStrand	10	chr4	150493218	150493308	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-11.8809
chr4	132310017	132310071	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr1	58398600	58398663	protein_coding	Aox3l1	intron	ENSMUSG00000079554	ProperStrand	31	1	-11.0545
chr2	90742729	90742819	protein_coding-noncoding	Ndufs3	utr3	ENSMUSG00000005510	NonProperStrand	1	chr2	90742856	90742956	protein_coding	Ndufs3	intron	ENSMUSG00000005510	NonProperStrand	8	1	-inf
chr10	9858878	9858978	LINE	L1Md_A	L1	chr10L1Md_A9858762	ProperStrand	1	chr10	9858988	9859078	LINE	L1Md_T	L1	chr10L1Md_T9859006	NonProperStrand	1	1	-inf
chr15	85899105	85899144	protein_coding	Gramd4	intron	ENSMUSG00000035900	NonProperStrand	29	chr1	52124057	52124117	protein_coding	Stat4	intron	ENSMUSG00000062939	ProperStrand	24	1	-15.3555
chr7	65360823	65360913	LINE	L1Md_T	L1	chr7L1Md_T65355894	ProperStrand	1	chr16	4658390	4658490	protein_coding	Dnaja3	intron	ENSMUSG00000004069	ProperStrand	10	1	-inf
chr11	82943623	82943640	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	14	chr2	121441778	121441907	protein_coding	Frmd5	intron	ENSMUSG00000027238	ProperStrand	82	1	-14.3586
chrX	4136307	4136359	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr9	123461864	123462158	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	4	-7.2420
chr13	29964412	29964477	SINE	B1_Mus1	Alu	chr13B1_Mus129964337	ProperStrand	7	chr9	88520271	88520334	lincRNA	Gm17683	intron	ENSMUSG00000091564	NonProperStrand	40	1	-17.3174
chr7	116125567	116125689	LINE	L1ME3A	L1	chr7L1ME3A116125435	ProperStrand	1	chr17	39847706	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	22744895	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	96202630	96202665	protein_coding	Tfdp2	intron	ENSMUSG00000032411	ProperStrand	65	1	-6.6497
chr5	147106541	147106631	protein_coding-noncoding	Cdk8	utr5	ENSMUSG00000029635	ProperStrand	14	chr13	97190561	97190613	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.0321
chr10	55330681	55330781	LTR	RMER3D-int	ERVK	chr10RMER3D-int55330154	NonProperStrand	1	chr10	55330943	55331033	SINE	B1_Mus2	Alu	chr10B1_Mus255330911	ProperStrand	1	1	-inf
chr3	55653005	55653093	protein_coding	Nbea	intron	ENSMUSG00000027799	ProperStrand	40	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-12.9104
chr11	20683804	20683873	LTR	RLTR6-int	ERV1	chr11RLTR6-int20682146	ProperStrand	2	chr8	122483211	122483379	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	2	-inf
chr8	73331951	73332049	SINE	ID_B1	B4	chr8ID_B173331978	NonProperStrand	3	chr15	73410424	73410470	protein_coding	Slc45a4	utr3	ENSMUSG00000079020	ProperStrand	12	1	-21.1865
chr17	39845446	39845551	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr4	6716228	6716245	protein_coding	Tox	intron	ENSMUSG00000041272	ProperStrand	5	1	-7.0883
chr5	146261180	146261196	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	53776472	53776498	protein_coding	Elmod1	intron	ENSMUSG00000041986	NonProperStrand	34	1	-6.1779
chr5	103751617	103751717	LINE	Lx8	L1	chr5Lx8103751620	ProperStrand	4	chr5	103751502	103751592	LTR	RLTR11B	ERVK	chr5RLTR11B103751388	ProperStrand	4	3	-inf
chr14	68124571	68124659	Low_complexity	CT-rich	Low_complexity	chr14CT-rich68124567	NonProperStrand	1	chr9	123462126	123462186	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	127398124	127398214	DNA	URR1A	MER1_type	chr1URR1A127398070	NonProperStrand	1	chr1	127397848	127397948	SINE	B4A	B4	chr1B4A127397809	ProperStrand	1	1	-inf
chr19	8723993	8724062	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr17	39843725	39843783	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-3.8677
chr6	86705011	86705074	protein_coding	Anxa4	intron	ENSMUSG00000029994	ProperStrand	40	chr7	116298558	116298631	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	1	-10.7741
mmu-miR-17-5p	0	21	miRNA	mmu-miR-17-5p	.	mmu-miR-17-5p	ProperStrand	2	chr7	125770868	125770988	protein_coding	Tmc5	intron	ENSMUSG00000030650	ProperStrand	26	1	-20.6107
chr17	39846882	39846995	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr18	47273750	47273767	protein_coding	Commd10	intron	ENSMUSG00000042705	NonProperStrand	9	1	-17.0624
chr19	47243980	47244019	DNA	ORSL-2b	Tip100	chr19ORSL-2b47243971	ProperStrand	1	chr19	47245406	47245450	protein_coding	Gm6970	exon	ENSMUSG00000091230	NonProperStrand	8	1	-inf
chr15	5234831	5234848	LINE	L1Md_A	L1	chr15L1Md_A5234368	NonProperStrand	3	chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr13	55563802	55563832	LINE	L2b	L2	chr13L2b55563806	ProperStrand	1	chr13	55556873	55556953	protein_coding	Grk6	intron	ENSMUSG00000074886	NonProperStrand	87	1	-inf
chr1	62773357	62773482	protein_coding	Nrp2	intron	ENSMUSG00000025969	ProperStrand	116	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	2	-8.6573
chr1	144923456	144923488	LINE	L1Md_A	L1	chr1L1Md_A144917717	ProperStrand	1	chr2	69761938	69762050	protein_coding	Ubr3	intron	ENSMUSG00000044308	ProperStrand	27	1	-inf
chr18	73671227	73671317	LINE	Lx6	L1	chr18Lx673671172	ProperStrand	1	chr18	73671476	73671576	SINE	B1_Mus2	Alu	chr18B1_Mus273671473	ProperStrand	1	1	-inf
chr16	36844785	36844831	protein_coding	Iqcb1	intron	ENSMUSG00000022837	ProperStrand	13	chr13	20301057	20301158	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	1	-12.6173
chr5	137307372	137307389	protein_coding	Emid2	intron	ENSMUSG00000004415	ProperStrand	82	chr3	105972301	105972415	protein_coding	Chi3l3	intron	ENSMUSG00000040809	NonProperStrand	47	1	-11.8870
chr17	39846098	39846176	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chrX	140447699	140447730	LTR	RLTR21	ERVK	chrXRLTR21140447550	ProperStrand	1	1	-inf
chr11	117674994	117675038	protein_coding	Syngr2	utr3	ENSMUSG00000048277	ProperStrand	14	chr11	117676697	117676781	protein_coding	RP23-268N22.1	intron	ENSMUSG00000093485	ProperStrand	53	1	-15.2303
chr14	121171516	121171616	LTR	RMER16-int	ERVK	chr14RMER16-int121171134	NonProperStrand	1	chr17	39847762	39847852	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	75754900	75754959	LTR	MLT1A	MaLR	chr13MLT1A75754903	ProperStrand	1	chr13	43256434	43256503	protein_coding	Tbc1d7	intron	ENSMUSG00000021368	ProperStrand	34	1	-inf
chr18	33795168	33795219	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	29	chr8	80821580	80821664	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-8.7454
chr17	39842999	39843053	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr8	83722290	83722334	LTR	MMETn-int	ERVK	chr8MMETn-int83722276	NonProperStrand	20	3	-17.1594
chr15	95811355	95811455	LINE	L1M2	L1	chr15L1M295811352	ProperStrand	1	chr15	95811200	95811290	SINE	ID_B1	B4	chr15ID_B195811215	ProperStrand	1	1	-inf
chrX	160181099	160181199	LTR	RMER5	ERV1	chrXRMER5160180974	NonProperStrand	1	chrX	160180793	160180883	SINE	PB1D9	Alu	chrXPB1D9160180761	ProperStrand	1	1	-inf
chr5	45310766	45310866	DNA	MER63B	AcHobo	chr5MER63B45310765	NonProperStrand	1	chr5	45311038	45311128	LTR	MTEa	MaLR	chr5MTEa45310879	ProperStrand	1	1	-inf
chr5	28356522	28356590	lincRNA	Gm16719	intron	ENSMUSG00000085535	NonProperStrand	24	chr2	20607661	20607717	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-10.4970
chr13	41465747	41465766	protein_coding	Nedd9	intron	ENSMUSG00000021365	ProperStrand	17	chr11	88574862	88574960	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-8.7987
chr1	135403337	135404266	LTR	ORR1B2	MaLR	chr1ORR1B2135403140	ProperStrand	3	chr1	135404244	135405832	SINE	B3	B2	chr1B3135404196	NonProperStrand	1	1	-inf
chr8	110667992	110668053	LINE	Lx8	L1	chr8Lx8110667523	NonProperStrand	1	chr8	110663522	110663596	SINE	B4	B4	chr8B4110663524	ProperStrand	1	1	-inf
chr3	80036222	80036312	LINE	L1MC2	L1	chr3L1MC280036229	ProperStrand	1	chr3	80035774	80035874	LINE	Lx2B	L1	chr3Lx2B80034263	NonProperStrand	1	1	-inf
chr15	81704399	81704432	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	chr16	18903527	18903645	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	1	-10.3033
chr12	102395287	102395326	LINE	L1_Mm	L1	chr12L1_Mm102394381	ProperStrand	2	chr17	39847550	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39843970	39843999	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr7	84107380	84107489	SINE	MIR	MIR	chr7MIR84107412	NonProperStrand	1	1	-inf
chr17	39847862	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	126923767	126923866	protein_coding	BC003266	intron	ENSMUSG00000042380	NonProperStrand	1	1	-inf
chr10	128070212	128072082	protein_coding	Ikzf4	utr3	ENSMUSG00000002578	NonProperStrand	38	chr13	94458628	94458726	protein_coding	Dmgdh	intron	ENSMUSG00000042102	ProperStrand	69	1	-12.6643
chr17	39847206	39847250	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	34187173	34187247	protein_coding	Col11a2	intron	ENSMUSG00000024330	NonProperStrand	2	1	-6.5615
chr1	47688206	47688296	LINE	L1Md_T	L1	chr1L1Md_T47686618	NonProperStrand	1	chr7	47188344	47188444	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	1	-inf
chr15	80077808	80078023	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr8	13416897	13416915	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	13	1	-11.1970
chr6	3902370	3902460	LINE	L1MDb	L1	chr6L1MDb3901864	ProperStrand	1	chr6	3902516	3902616	LINE	L1MDb	L1	chr6L1MDb3902537	ProperStrand	1	1	-inf
chr11	60548638	60548728	LTR	MTD	MaLR	chr11MTD60548593	ProperStrand	1	chr11	57532113	57532213	protein_coding	Galnt10	intron	ENSMUSG00000020520	ProperStrand	49	1	-inf
chr17	39847607	39847661	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	19851479	19851522	Low_complexity	CT-rich	Low_complexity	chr12CT-rich19851453	NonProperStrand	1	1	-inf
chr17	39847477	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	6339356	6340065	protein_coding	Men1	exon	ENSMUSG00000024947	ProperStrand	5	2	-5.9065
chr7	80060641	80060731	Simple_repeat	(TATATG)n	Simple_repeat	chr7(TATATG)n80060640	ProperStrand	4	chr9	108948548	108948953	protein_coding	Shisa5	intron	ENSMUSG00000025647	ProperStrand	64	2	-inf
chr17	39847044	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	140702317	140702392	SINE	B1_Mus2	Alu	chr4B1_Mus2140702249	NonProperStrand	2	1	-5.3533
chr17	39847447	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	55090410	55090470	SINE	ID_B1	B4	chr14ID_B155090376	ProperStrand	1	1	-inf
chr2	177479127	177479175	LINE	L1VL1	L1	chr2L1VL1177476150	NonProperStrand	6	chr2	26441623	26441725	protein_coding	Egfl7	intron	ENSMUSG00000026921	NonProperStrand	23	1	-19.2656
chr5	110422245	110422307	LINE	L1_Mus2	L1	chr5L1_Mus2110421850	ProperStrand	5	chr5	110422400	110422461	SINE	B2_Mm2	B2	chr5B2_Mm2110422411	ProperStrand	1	1	-inf
chr5	146261174	146261226	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	91706501	91706546	protein_coding	Slc6a6	utr3	ENSMUSG00000030096	ProperStrand	99	1	-4.1049
chr2	73012888	73012914	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr13	97190558	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6660
chr1	33755365	33755455	LTR	MTD	MaLR	chr1MTD33755371	NonProperStrand	1	chr1	33755242	33755342	SINE	B4A	B4	chr1B4A33755154	NonProperStrand	1	1	-inf
chr8	25983556	25983572	protein_coding	Adam32	intron	ENSMUSG00000037437	NonProperStrand	4	chr12	54013217	54013323	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-15.3137
chr9	40803300	40803359	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr2	180193981	180194059	protein_coding	Slco4a1	intron	ENSMUSG00000038963	NonProperStrand	161	1	-5.4937
chr9	64698631	64698675	protein_coding	Dennd4a	intron	ENSMUSG00000053641	NonProperStrand	54	chr5	118066634	118066717	protein_coding	Ksr2	intron	ENSMUSG00000061578	NonProperStrand	228	1	-9.5585
chr17	39845507	39845633	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chrX	97077164	97077181	SINE	MIRc	MIR	chrXMIRc97077124	ProperStrand	5	1	-7.0883
chr11	12460262	12460323	LINE	Lx4B	L1	chr11Lx4B12460277	ProperStrand	1	chr11	12391966	12392017	LINE	Lx6	L1	chr11Lx612391693	ProperStrand	2	1	-inf
chr8	71969823	71969877	LINE	Lx5	L1	chr8Lx571969027	ProperStrand	4	chr9	123461931	123461974	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr17	93336130	93336235	LINE	L1_Mus4	L1	chr17L1_Mus493335399	NonProperStrand	1	chr9	70241942	70241970	protein_coding	Myo1e	intron	ENSMUSG00000032220	ProperStrand	78	1	-inf
chr9	123461884	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	108043488	108043551	protein_coding	Fam159a	intron	ENSMUSG00000059816	ProperStrand	5	1	-5.8308
chr17	39843353	39843476	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr10	128322461	128322477	protein_coding	Gdf11	exon	ENSMUSG00000025352	ProperStrand	1	1	-inf
chr2	71422549	71422657	SINE	B1_Mur4	Alu	chr2B1_Mur471422551	ProperStrand	1	chr5	121752568	121752592	protein_coding	Gm15800	intron	ENSMUSG00000042744	NonProperStrand	4	1	-inf
chr17	28966983	28967021	protein_coding	Brpf3	intron	ENSMUSG00000063952	ProperStrand	44	chr4	119137001	119137108	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-8.3544
chr1	148578219	148578251	protein_coding	Fam5c	intron	ENSMUSG00000035131	NonProperStrand	10	chr18	49999048	49999111	protein_coding	Dmxl1	intron	ENSMUSG00000037416	ProperStrand	116	1	-14.3692
chr5	124016783	124016869	protein_coding	Vps33a	intron	ENSMUSG00000029434	ProperStrand	26	chr7	27396958	27397013	protein_coding	Vmn1r185	exon	ENSMUSG00000091924	ProperStrand	2	1	-20.4235
chr3	16249991	16250091	LINE	Lx2	L1	chr3Lx216249883	ProperStrand	1	chr3	16249788	16249878	LTR	RLTR13D4	ERVK	chr3RLTR13D416248910	NonProperStrand	1	1	-inf
chr2	57309075	57309125	LTR	MLT1A1	MaLR	chr2MLT1A157309084	NonProperStrand	1	chr2	181513195	181513288	protein_coding	Myt1	intron	ENSMUSG00000010505	ProperStrand	44	1	-inf
chr17	39846659	39846805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	125404248	125404286	Low_complexity	AT_rich	Low_complexity	chr5AT_rich125404251	NonProperStrand	6	2	-5.1926
chr9	110612237	110612362	protein_coding	Ccdc12	intron	ENSMUSG00000019659	ProperStrand	25	chr6	90707273	90707308	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	1	-11.3588
chr17	39847207	39847224	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	73893383	73893426	LTR	MLT1C	MaLR	chr2MLT1C73892987	NonProperStrand	1	1	-inf
chr3	68982396	68982455	LINE	L2a	L2	chr3L2a68982412	ProperStrand	2	chr3	68982660	68982709	LTR	MLT2B2	ERVL	chr3MLT2B268982580	ProperStrand	2	2	-inf
chr9	45382489	45382608	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	chr7	98267581	98267604	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-5.3411
chr6	3201465	3201565	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	1	-3.2230
chr7	103550797	103550887	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	chr7	120015116	120015216	protein_coding	Tead1	intron	ENSMUSG00000055320	ProperStrand	25	1	-13.8003
chr17	39846656	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	122383965	122383993	Simple_repeat	(TTC)n	Simple_repeat	chr8(TTC)n122383902	ProperStrand	2	1	-5.3533
chr1	153318181	153318210	protein_coding	Rnf2	utr3	ENSMUSG00000026484	ProperStrand	71	chr1	153301131	153301201	protein_coding	1190005F20Rik	intron	ENSMUSG00000053286	NonProperStrand	31	1	-13.0203
chr5	136932950	136932995	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	113	chr13	44869630	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.3103
chr10	128582071	128582087	LINE	L1Md_A	L1	chr10L1Md_A128579054	ProperStrand	2	chr4	139338288	139338365	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	1	-18.9170
chr12	111376181	111376281	LTR	ORR1D1	MaLR	chr12ORR1D1111376199	NonProperStrand	1	chr12	111375785	111375875	SINE	B3	B2	chr12B3111375772	NonProperStrand	1	1	-inf
chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	chrX	145674310	145674331	protein_coding	Gm15093	intron	ENSMUSG00000079843	NonProperStrand	1	1	-inf
chr17	39848416	39848478	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	97920466	97920560	protein_coding	Notch2	intron	ENSMUSG00000027878	ProperStrand	21	1	-3.2798
chr6	33639076	33639139	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr9	21579453	21579506	protein_coding	Kank2	intron	ENSMUSG00000032194	NonProperStrand	40	1	-7.6221
chr5	134945900	134945990	SINE	B3A	B2	chr5B3A134945828	NonProperStrand	3	chr5	134945727	134945827	SINE	ID_B1	B4	chr5ID_B1134945630	NonProperStrand	4	1	-inf
chr16	38575781	38582014	protein_coding-noncoding	Tmem39a	utr5	ENSMUSG00000002845	ProperStrand	2	chr16	38582031	38585182	protein_coding	Tmem39a	intron	ENSMUSG00000002845	ProperStrand	41	1	-20.9076
chr15	80081047	80081164	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr11	86544574	86544617	protein_coding	Cltc	intron	ENSMUSG00000047126	ProperStrand	35	1	-9.1712
chr8	31151456	31151475	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr12	78350931	78351073	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-5.4078
chr6	90704245	90704345	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	chr7	25509059	25509149	protein_coding	Gm4763	intron	ENSMUSG00000058717	NonProperStrand	3	2	-22.4603
chr7	102441886	102441938	LINE	Lx4A	L1	chr7Lx4A102441216	NonProperStrand	4	chr17	57107210	57107246	protein_coding	Acer1	intron	ENSMUSG00000045019	NonProperStrand	5	1	-inf
chr2	31579443	31579492	protein_coding	Abl1	intron	ENSMUSG00000026842	ProperStrand	150	chr7	133116656	133116715	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.4480
chr1	136364891	136364956	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr4	101453704	101453792	protein_coding	Lepr	intron	ENSMUSG00000057722	ProperStrand	109	1	-9.1823
chr17	39847988	39848028	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	11549550	11549612	LTR	RLTR20B3	ERVK	chr4RLTR20B311549186	NonProperStrand	1	1	-inf
chr19	4772983	4773041	DNA	RCHARR1	MER1_type	chr19RCHARR14772958	NonProperStrand	3	chr19	4784948	4785029	protein_coding	Rbm14	utr3	ENSMUSG00000006456	ProperStrand	194	3	-inf
chr3	87927364	87927446	LINE	L1MB7	L1	chr3L1MB787927254	NonProperStrand	1	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-inf
chr17	22109426	22109526	protein_coding	Zfp943	intron	ENSMUSG00000053347	NonProperStrand	10	chr17	22113320	22113410	protein_coding	Zfp943	intron	ENSMUSG00000053347	ProperStrand	7	1	-20.1042
chr9	89308326	89308342	LTR	MTA_Mm	MaLR	chr9MTA_Mm89308021	NonProperStrand	3	chr10	58334390	58334506	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-16.4721
chr12	99332682	99332782	LTR	IAPLTR4	ERVK	chr12IAPLTR499332433	ProperStrand	2	chr12	99332796	99332886	LTR	RMER19C	ERVK	chr12RMER19C99332769	NonProperStrand	2	2	-inf
chr17	39847159	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	48282345	48282362	protein_coding	Frmd7	intron	ENSMUSG00000036131	ProperStrand	3	1	-5.4882
chr5	83647282	83647382	LINE	L1_Mur3	L1	chr5L1_Mur383647212	ProperStrand	1	chr5	83647516	83647606	LINE	Lx2B	L1	chr5Lx2B83647510	ProperStrand	1	1	-inf
chrX	20570002	20570092	LINE	L1VL1	L1	chrXL1VL120569687	ProperStrand	1	chrX	20569611	20569711	SINE	B1_Mm	Alu	chrXB1_Mm20569585	ProperStrand	1	1	-inf
chr9	118402348	118402444	LTR	ORR1B2-int	MaLR	chr9ORR1B2-int118402331	NonProperStrand	4	chr9	118398538	118398578	SINE	ID_B1	B4	chr9ID_B1118398482	ProperStrand	1	1	-inf
chr1	6354129	6354219	lincRNA	Fam150a	intron	ENSMUSG00000087247	NonProperStrand	1	chr10	122565805	122565905	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-inf
chr16	83499149	83499249	LTR	ORR1D-int	MaLR	chr16ORR1D-int83498911	ProperStrand	1	chr7	5409572	5409662	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	1	-inf
chr17	27761633	27761723	SINE	B3	B2	chr17B327761582	NonProperStrand	6	chr17	27761464	27761564	SINE	RSINE1	B4	chr17RSINE127761405	NonProperStrand	2	2	-inf
chr1	136364891	136364950	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr8	70387673	70388121	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-5.7935
chr11	20705766	20705795	LTR	RMER16	ERVK	chr11RMER1620705735	NonProperStrand	1	chr17	39846352	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	68242613	68242713	LINE	L1MC4a	L1	chr11L1MC4a68242328	ProperStrand	5	chr11	68242792	68242882	Simple_repeat	(TTCC)n	Simple_repeat	chr11(TTCC)n68242796	NonProperStrand	4	4	-inf
chr17	39846807	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	112744850	112744940	SINE	B2_Mm2	B2	chr12B2_Mm2112744810	ProperStrand	2	1	-5.3533
chr18	16223452	16223542	LINE	L1_Mus2	L1	chr18L1_Mus216223061	ProperStrand	1	chr18	16223991	16224091	LINE	L1_Mus2	L1	chr18L1_Mus216223974	ProperStrand	1	1	-inf
chr7	5031128	5031157	protein_coding	U2af2	utr3	ENSMUSG00000030435	ProperStrand	28	chr7	5031831	5031929	protein_coding	Epn1	utr5	ENSMUSG00000035203	ProperStrand	7	1	-18.0354
chrX	77660976	77661069	LINE	MusHAL1	L1	chrXMusHAL177660989	NonProperStrand	3	chr11	87442278	87442298	protein_coding	Hsf5	intron	ENSMUSG00000070345	NonProperStrand	4	1	-inf
chr17	39847216	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	85954542	85954633	protein_coding-noncoding	Syn3	utr3	ENSMUSG00000059602	ProperStrand	1	1	-inf
chr7	30194046	30195038	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	ProperStrand	147	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-6.0737
chr16	16078271	16078302	miRNA	AC113329.1	.	ENSMUSG00000092960	ProperStrand	1	chr16	16065695	16065736	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	1	-inf
chr15	85177750	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr5	105704335	105704430	protein_coding	Gbp6	intron	ENSMUSG00000079362	NonProperStrand	66	1	-9.1122
chr6	13655858	13655922	LTR	IAPEY3-int	ERVK	chr6IAPEY3-int13655793	ProperStrand	1	chr6	13656028	13656108	SINE	B1_Mur4	Alu	chr6B1_Mur413656038	ProperStrand	1	1	-inf
chr17	39848486	39848536	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	132504428	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	1	-3.0052
chr17	42795555	42795580	protein_coding	Gpr115	intron	ENSMUSG00000023918	ProperStrand	25	chr7	120930272	120930362	protein_coding	Spon1	intron	ENSMUSG00000038156	ProperStrand	96	1	-12.8498
chr3	34883104	34883204	LINE	L1Md_F2	L1	chr3L1Md_F234882712	ProperStrand	1	chr3	34882631	34882721	LTR	ORR1A1-int	MaLR	chr3ORR1A1-int34881848	ProperStrand	2	1	-inf
chr17	39847652	39847683	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	130738067	130738086	protein_coding	Tyw1	intron	ENSMUSG00000056310	ProperStrand	4	1	-3.7035
chr11	109011796	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	153723805	153723865	protein_coding	Phex	intron	ENSMUSG00000057457	NonProperStrand	9	1	-9.9559
chr13	44869942	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr9	64681796	64681878	protein_coding	Dennd4a	intron	ENSMUSG00000053641	ProperStrand	10	1	-8.0770
chr2	164747514	164754142	SINE	ID	ID	chr2ID164747496	NonProperStrand	1	chr10	79860155	79860838	protein_coding	Mbd3	intron	ENSMUSG00000035478	NonProperStrand	98	1	-inf
chr8	109672458	109672500	LINE	L1Md_F2	L1	chr8L1Md_F2109672259	ProperStrand	3	chr8	109682171	109682655	protein_coding	Cyb5b	intron	ENSMUSG00000031924	NonProperStrand	9	1	-21.6921
chr3	64041444	64041560	LINE	Lx3C	L1	chr3Lx3C64041428	NonProperStrand	1	chr3	64050757	64050785	LTR	RNERVK23-int	ERVK	chr3RNERVK23-int64050194	ProperStrand	8	1	-inf
chr1	100122261	100122351	LINE	Lx9	L1	chr1Lx9100122089	ProperStrand	1	chr1	100122547	100122647	LINE	Lx9	L1	chr1Lx9100122533	ProperStrand	1	1	-inf
chr17	39847246	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	168328424	168328542	protein_coding	Pogk	utr3	ENSMUSG00000040596	ProperStrand	7	1	-3.6430
chr4	33918116	33918216	LINE	Lx9	L1	chr4Lx933918115	ProperStrand	1	chr4	33918534	33918624	LTR	MTD	MaLR	chr4MTD33918378	NonProperStrand	1	1	-inf
chr16	19120141	19120241	LINE	L1Md_A	L1	chr16L1Md_A19119388	ProperStrand	1	chr8	13417127	13417217	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	1	-inf
chr17	39848182	39848209	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	7535475	7535546	protein_coding	Rtn3	intron	ENSMUSG00000024758	NonProperStrand	24	1	-3.0353
chr17	27857368	27857470	protein_coding	Spdef	utr5	ENSMUSG00000024215	NonProperStrand	15	chr1	89782766	89782816	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-12.3008
chr5	105807618	105807682	LINE	L1Md_A	L1	chr5L1Md_A105801683	NonProperStrand	7	chr5	105808023	105808082	LINE	L1Md_F2	L1	chr5L1Md_F2105808037	NonProperStrand	3	1	-inf
chr7	107697129	107697205	protein_coding	Mrpl48	utr3	ENSMUSG00000030706	NonProperStrand	8	chr13	64249154	64249205	protein_coding	Zfp367	intron	ENSMUSG00000044934	ProperStrand	9	1	-23.8657
chr4	125124113	125124213	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n125124034	NonProperStrand	2	chr4	125124210	125124300	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n125124224	NonProperStrand	2	2	-inf
chr5	33575466	33575556	LTR	MTD	MaLR	chr5MTD33575389	ProperStrand	1	chr5	33575190	33575290	SINE	B1_Mur1	Alu	chr5B1_Mur133575190	NonProperStrand	1	1	-inf
chr5	63049923	63049942	protein_coding	Arap2	intron	ENSMUSG00000037999	NonProperStrand	9	chr13	44869576	44869695	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.2984
chr17	33881903	33881979	LINE	Lx8	L1	chr17Lx833881657	ProperStrand	1	chr17	33883524	33883590	protein_coding	Rab11b	utr3	ENSMUSG00000077450	ProperStrand	25	1	-inf
chr3	46961424	46961524	LINE	L1Md_F2	L1	chr3L1Md_F246960911	ProperStrand	1	chr3	46961679	46961769	LINE	L1_Mus1	L1	chr3L1_Mus146961652	ProperStrand	1	1	-inf
chr3	135271307	135271397	protein_coding-noncoding	Nfkb1	utr3	ENSMUSG00000028163	NonProperStrand	2	chr3	135271405	135271505	protein_coding	Nfkb1	intron	ENSMUSG00000028163	NonProperStrand	20	1	-20.4416
chr4	19687792	19708860	LINE	L1Md_T	L1	chr4L1Md_T19686847	ProperStrand	1	chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr2	93788090	93788190	LINE	L1M4	L1	chr2L1M493787882	ProperStrand	2	chr2	93788197	93788287	Low_complexity	GA-rich	Low_complexity	chr2GA-rich93788181	NonProperStrand	2	2	-inf
chr2	152117343	152117433	SINE	B2_Mm1a	B2	chr2B2_Mm1a152117339	NonProperStrand	1	chr2	152116997	152117097	SINE	ID_B1	B4	chr2ID_B1152116955	NonProperStrand	1	1	-inf
chr9	123461802	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr19	6922678	6922764	protein_coding	Ccdc88b	exon	ENSMUSG00000047810	ProperStrand	12	1	-4.0248
chr2	180220962	180221052	SINE	B2_Mm2	B2	chr2B2_Mm2180220920	ProperStrand	3	chr2	180220838	180220938	Simple_repeat	(TTCC)n	Simple_repeat	chr2(TTCC)n180220808	NonProperStrand	2	2	-inf
chr9	120574105	120574217	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120574039	ProperStrand	43	chr16	4497143	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	1	-14.4737
chr17	39847453	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	23694277	23694296	LTR	RodERV21-int	ERV1	chrXRodERV21-int23692944	ProperStrand	1	1	-inf
chr2	115591122	115591150	protein_coding	BC052040	intron	ENSMUSG00000040282	ProperStrand	31	chr4	101424294	101424312	protein_coding	Lepr	intron	ENSMUSG00000057722	NonProperStrand	24	1	-15.2233
chrX	113645384	113645474	LINE	L1Md_F2	L1	chrXL1Md_F2113645325	ProperStrand	2	chrX	113645527	113645627	LINE	Lx9	L1	chrXLx9113645537	ProperStrand	2	2	-inf
chr10	12613815	12613927	LTR	RMER19B	ERVK	chr10RMER19B12613511	NonProperStrand	1	chr17	39846818	39846850	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	136364891	136364970	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr5	17776747	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-8.4666
chr9	106300822	106300923	Simple_repeat	(GAAA)n	Simple_repeat	chr9(GAAA)n106300850	ProperStrand	1	chr2	77917117	77917134	lincRNA	4930440I19Rik	intron	ENSMUSG00000085431	NonProperStrand	28	1	-inf
chr11	70235126	70235226	LTR	ORR1D1	MaLR	chr11ORR1D170235018	NonProperStrand	4	chr11	70234639	70234729	LTR	RLTR23	ERV1	chr11RLTR2370234387	NonProperStrand	4	4	-inf
chr17	39846462	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	51463194	51463239	LTR	ORR1A4	MaLR	chr6ORR1A451462944	NonProperStrand	3	1	-4.3017
chr15	97561020	97561077	protein_coding	Endou	intron	ENSMUSG00000022468	NonProperStrand	2	chr1	132504706	132504808	protein_coding	Zp3r	intron	ENSMUSG00000042554	NonProperStrand	56	1	-19.4250
chr7	58738233	58738344	LINE	Lx4A	L1	chr7Lx4A58737609	ProperStrand	1	chr9	123462115	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	24149343	24149436	SINE	B2_Mm2	B2	chr5B2_Mm224149226	NonProperStrand	1	chr3	86032385	86032449	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-inf
chr15	80964707	80964824	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	chr10	40401116	40401141	protein_coding	Ddo	utr3	ENSMUSG00000063428	ProperStrand	39	1	-10.9356
chr4	132024947	132025044	SINE	RSINE1	B4	chr4RSINE1132024973	NonProperStrand	2	chr4	118144378	118144426	protein_coding	Tie1	intron	ENSMUSG00000033191	ProperStrand	26	2	-inf
chr4	147926970	147927020	protein_coding	Mtor	intron	ENSMUSG00000028991	NonProperStrand	36	chr18	61161525	61161586	protein_coding	Slc6a7	intron	ENSMUSG00000052026	ProperStrand	11	2	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr9	70239710	70239807	protein_coding	Myo1e	intron	ENSMUSG00000032220	ProperStrand	78	1	-9.2812
chr19	5798671	5798746	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr1	133034361	133034405	protein_coding	Dyrk3	intron	ENSMUSG00000016526	ProperStrand	5	1	-9.5162
chr2	114138752	114138793	LINE	L1Md_F2	L1	chr2L1Md_F2114137747	ProperStrand	1	chr5	123570925	123571510	protein_coding	Rhof	intron	ENSMUSG00000029449	ProperStrand	10	1	-inf
chr17	39848534	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	139258941	139259026	protein_coding	Cpxm2	intron	ENSMUSG00000030862	NonProperStrand	17	1	-3.9354
chr1	44095406	44095506	LINE	Lx2	L1	chr1Lx244095049	NonProperStrand	1	chr1	44095525	44095615	LTR	MTA_Mm	MaLR	chr1MTA_Mm44095496	NonProperStrand	1	1	-inf
chr15	100078286	100078401	protein_coding	Atf1	intron	ENSMUSG00000023027	ProperStrand	30	chr2	101797330	101797350	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-12.0819
chr17	39847623	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	63807427	63807446	protein_coding	Smad6	intron	ENSMUSG00000036867	NonProperStrand	4	1	-3.7035
chr17	80475451	80475551	SINE	B1_Mus1	Alu	chr17B1_Mus180475402	ProperStrand	6	chr17	80475576	80475666	SINE	B3	B2	chr17B380475561	ProperStrand	6	6	-inf
chr2	34814232	34814332	protein_coding-noncoding	Traf1	utr3	ENSMUSG00000026875	NonProperStrand	5	chr2	34814123	34814213	protein_coding	Traf1	utr5	ENSMUSG00000026875	NonProperStrand	7	1	-21.1751
chr19	54731936	54731953	LINE	L1_Mur2	L1	chr19L1_Mur254731651	NonProperStrand	1	chr17	39846581	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	132550455	132551539	protein_coding	Fgr	intron	ENSMUSG00000028874	ProperStrand	28	chr2	152773201	152773335	protein_coding	Dusp15	intron	ENSMUSG00000042662	ProperStrand	3	1	-20.6138
chr17	39847658	39847697	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	66652109	66652138	protein_coding	Nsun7	utr5	ENSMUSG00000029206	NonProperStrand	2	1	-5.4040
chr13	117272053	117272081	LINE	L1_Mus1	L1	chr13L1_Mus1117271893	NonProperStrand	1	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-inf
chr17	39846375	39846392	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	129793677	129793704	LTR	RMER15	ERVL	chr5RMER15129793626	ProperStrand	1	1	-inf
chr7	118694306	118694386	protein_coding	Galntl4	intron	ENSMUSG00000038296	ProperStrand	65	chr16	92085096	92085132	protein_coding	Slc5a3	utr3	ENSMUSG00000089774	ProperStrand	25	1	-13.6376
chr18	34223945	34224036	LINE	L1M5	L1	chr18L1M534223859	NonProperStrand	1	chr18	34224036	34224136	LTR	MTE2b	MaLR	chr18MTE2b34224063	ProperStrand	2	1	-inf
chr14	97955497	97955587	LINE	L2	L2	chr14L297955399	NonProperStrand	1	chr14	97949529	97949629	SINE	B3	B2	chr14B397949441	NonProperStrand	1	1	-inf
chr8	43175554	43175654	LTR	ORR1A0-int	MaLR	chr8ORR1A0-int43174345	NonProperStrand	5	chr11	35952302	35952392	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-13.5466
chr7	28042813	28042833	lincRNA	Gm15567	intron	ENSMUSG00000084974	ProperStrand	3	chr6	97493853	97493975	protein_coding	Frmd4b	intron	ENSMUSG00000030064	ProperStrand	32	1	-19.1201
chr17	39846816	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	167017785	167017883	lincRNA	1110018N20Rik	exon	ENSMUSG00000085151	ProperStrand	4	1	-3.6552
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr1	15815309	15815401	protein_coding	Terf1	intron	ENSMUSG00000025925	ProperStrand	66	2	-15.1910
chr2	53965827	53965917	LINE	Lx8	L1	chr2Lx853965716	ProperStrand	1	chr2	53965544	53965644	LTR	ORR1B1	MaLR	chr2ORR1B153965334	NonProperStrand	1	1	-inf
chrX	74235876	74235941	LINE	L1Md_F2	L1	chrXL1Md_F274235532	NonProperStrand	8	chr6	98960759	98960826	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	1	-14.2601
chr17	39847736	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	41465747	41465766	protein_coding	Nedd9	intron	ENSMUSG00000021365	ProperStrand	17	5	-7.4356
chr8	12861577	12861677	protein_coding-noncoding	Atp11a	utr5	ENSMUSG00000031441	ProperStrand	1	chr8	12861459	12861549	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	135	1	-inf
chr2	39384413	39384430	LTR	IAPEz-int	ERVK	chr2IAPEz-int39383001	NonProperStrand	4	chr6	3201474	3201517	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-8.3508
chr12	59017193	59017210	LINE	L1Md_A	L1	chr12L1Md_A59011732	ProperStrand	4	chr5	132535789	132535916	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-12.8710
chr8	87691292	87691392	LTR	MTD	MaLR	chr8MTD87691238	ProperStrand	1	chr8	87691566	87691656	LTR	ORR1B2	MaLR	chr8ORR1B287691427	NonProperStrand	1	1	-inf
chr2	177085463	177085563	LTR	ORR1D1	MaLR	chr2ORR1D1177085486	ProperStrand	2	chr7	109521624	109521714	protein_coding	Stim1	intron	ENSMUSG00000030987	NonProperStrand	49	2	-inf
chr17	39846378	39846890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	139318349	139363689	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	9	-4.5556
chr5	137454484	137454574	LTR	IAPEY_LTR	ERVK	chr5IAPEY_LTR137454342	ProperStrand	1	chr5	137454010	137454110	SINE	B1_Mur4	Alu	chr5B1_Mur4137453957	ProperStrand	1	1	-inf
chrX	161912234	161912295	LINE	L1Md_T	L1	chrXL1Md_T161912056	ProperStrand	3	chrX	161911937	161912008	LINE	Lx2	L1	chrXLx2161911647	ProperStrand	2	2	-inf
chr17	32852660	32852760	LTR	MTC	MaLR	chr17MTC32852336	NonProperStrand	1	chr1	16103518	16103608	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	1	-inf
chr9	46323483	46323573	LINE	L1MB2	L1	chr9L1MB246323425	NonProperStrand	1	chr9	46323266	46323366	LTR	ORR1E	MaLR	chr9ORR1E46323242	ProperStrand	1	1	-inf
chr17	35504182	35504272	LTR	IAP-d-int	ERVK	chr17IAP-d-int35500328	NonProperStrand	1	chr17	35504306	35504406	LTR	IAPLTR1a_Mm	ERVK	chr17IAPLTR1a_Mm35504294	ProperStrand	1	1	-inf
chr1	93587443	93587533	LTR	ORR1A2	MaLR	chr1ORR1A293587388	NonProperStrand	1	chr1	84470194	84470294	protein_coding	Dner	intron	ENSMUSG00000036766	NonProperStrand	9	1	-inf
chr17	46873520	46873554	protein_coding	Cnpy3	utr3	ENSMUSG00000023973	ProperStrand	25	chr13	99976408	99976510	protein_coding	Zfp366	intron	ENSMUSG00000050919	NonProperStrand	32	1	-15.0657
chr12	107388360	107388450	Low_complexity	C-rich	Low_complexity	chr12C-rich107388356	ProperStrand	1	chr12	107388482	107388582	SINE	ID_B1	B4	chr12ID_B1107388484	NonProperStrand	1	1	-inf
chr5	146261163	146261189	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	69453312	69453328	protein_coding	Fxr2	intron	ENSMUSG00000018765	NonProperStrand	4	1	-10.6768
chr4	43492782	43492849	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr17	24528474	24528552	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	24	1	-8.9346
chr4	139461834	139462193	SINE	B3	B2	chr4B3139461765	ProperStrand	6	chr4	139460239	139460330	Simple_repeat	(CATA)n	Simple_repeat	chr4(CATA)n139460150	ProperStrand	7	5	-inf
chr7	132317096	132317116	LINE	L1M5	L1	chr7L1M5132317001	NonProperStrand	1	chr15	34440790	34440922	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	1	-inf
chrX	73571678	73571696	LINE	Lx	L1	chrXLx73571263	NonProperStrand	1	chr13	97190551	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr5	149618986	149619039	DNA	URR1A	MER1_type	chr5URR1A149618791	ProperStrand	2	chr17	39848140	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr10	120085753	120085800	LINE	L2b	L2	chr10L2b120085487	NonProperStrand	1	chr10	120086644	120086756	SINE	B3A	B2	chr10B3A120086581	ProperStrand	1	1	-inf
chr1	89116261	89116307	protein_coding	Eif4e2	intron	ENSMUSG00000026254	ProperStrand	80	chr2	5379229	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0024
chr18	73582355	73582460	LINE	L1Md_F2	L1	chr18L1Md_F273582288	NonProperStrand	1	chr17	39846952	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	8642965	8643055	LTR	MTC	MaLR	chr14MTC8642932	NonProperStrand	1	chr14	8643119	8643219	SINE	B1_Mur2	Alu	chr14B1_Mur28643079	ProperStrand	1	1	-inf
chr17	87522905	87522926	protein_coding	Socs5	intron	ENSMUSG00000037104	ProperStrand	1	chr13	97190601	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr7	126270378	126270478	LINE	L1Md_F2	L1	chr7L1Md_F2126270372	ProperStrand	1	chr7	126270504	126270594	LTR	RMER20B	ERVK	chr7RMER20B126270510	ProperStrand	1	1	-inf
chr5	143883067	143883157	SINE	B3	B2	chr5B3143882949	ProperStrand	1	chr5	143883229	143883329	SINE	B3	B2	chr5B3143883244	NonProperStrand	1	1	-inf
chr4	25771450	25771526	LINE	L1Md_F2	L1	chr4L1Md_F225769556	NonProperStrand	2	chr2	102829379	102829456	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-17.3731
chr15	31478479	31480318	LTR	MurERV4_19-int	ERVK	chr15MurERV4_19-int31479348	ProperStrand	1	chr1	63591090	63591131	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-inf
chr17	87986939	87988233	LTR	RLTR19-int	ERVK	chr17RLTR19-int87986885	ProperStrand	3	chr17	87988240	87988340	LTR	RLTR19-int	ERVK	chr17RLTR19-int87987642	ProperStrand	4	3	-inf
chr13	37828722	37828812	SINE	B2_Mm1t	B2	chr13B2_Mm1t37828644	ProperStrand	1	chr13	37829141	37829241	SINE	B3	B2	chr13B337829084	ProperStrand	5	1	-inf
chr2	5379279	5379335	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	115554255	115554272	pseudogene	Gm13826	.	ENSMUSG00000072692	NonProperStrand	36	1	-5.5405
chr17	39847191	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	61347252	61347273	LTR	MERVL-int	ERVL	chr17MERVL-int61345498	ProperStrand	3	1	-5.4882
chr2	121007641	121007675	protein_coding	Tubgcp4	intron	ENSMUSG00000027263	ProperStrand	1	chr7	127017214	127017231	protein_coding	Dcun1d3	intron	ENSMUSG00000048787	NonProperStrand	8	1	-inf
chr8	94248431	94248456	Low_complexity	GA-rich	Low_complexity	chr8GA-rich94248408	ProperStrand	1	chr12	41222643	41222678	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-inf
chr9	70722693	70722717	protein_coding	Lipc	intron	ENSMUSG00000032207	NonProperStrand	30	chr15	81473906	81475114	protein_coding	Ep300	intron	ENSMUSG00000055024	ProperStrand	52	1	-13.7134
chr19	8713788	8713843	SINE	B3A	B2	chr19B3A8713670	NonProperStrand	2	chr5	142667443	142667514	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-16.2100
chr5	40745638	40745728	LINE	L1Md_F2	L1	chr5L1Md_F240745517	ProperStrand	1	chr5	40745148	40745248	LINE	L1Md_F3	L1	chr5L1Md_F340744097	ProperStrand	1	1	-inf
chr2	22744839	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	122378490	122378568	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-5.2459
chr2	160940511	160940612	LTR	MTC	MaLR	chr2MTC160940233	NonProperStrand	2	chr2	160940672	160940762	SINE	B3A	B2	chr2B3A160940681	NonProperStrand	2	2	-inf
chr17	39846415	39846489	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	96154754	96154838	protein_coding	Hoxb6	intron	ENSMUSG00000000690	ProperStrand	1	1	-inf
chr17	5984949	5985050	protein_coding	Synj2	intron	ENSMUSG00000023805	ProperStrand	26	chr6	71814064	71814106	protein_coding	Immt	intron	ENSMUSG00000052337	ProperStrand	7	1	-18.1953
chr3	96931856	96931946	LINE	L1MA8	L1	chr3L1MA896930666	NonProperStrand	1	chr3	96932026	96932126	SINE	B2_Mm2	B2	chr3B2_Mm296932049	NonProperStrand	1	1	-inf
chr11	117335416	117335467	LTR	RMER19C	ERVK	chr11RMER19C117335424	ProperStrand	1	chr11	117337907	117337957	Low_complexity	C-rich	Low_complexity	chr11C-rich117337843	ProperStrand	1	1	-inf
chr16	15673006	15673075	protein_coding	Prkdc	intron	ENSMUSG00000022672	ProperStrand	42	chr11	4419429	4419488	protein_coding	Mtmr3	intron	ENSMUSG00000034354	ProperStrand	84	1	-12.0659
chr17	32854439	32854537	LTR	IAPLTR4_I	ERVK	chr17IAPLTR4_I32853902	NonProperStrand	2	chr13	97190573	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr5	146260995	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	1	-4.6843
chr11	109011810	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	120946979	120947009	LINE	L1_Mus2	L1	chr14L1_Mus2120945935	NonProperStrand	12	1	-9.3520
chrX	13169440	13169458	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	chr9	64175085	64175113	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-7.0148
chr11	88638358	88638438	LINE	L1MB5	L1	chr11L1MB588638326	NonProperStrand	1	chr17	39846376	39846440	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	5794643	5794733	LTR	MTA_Mm	MaLR	chr19MTA_Mm5794384	ProperStrand	1	chr2	44861496	44861596	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	25	1	-inf
chr12	112613059	112613123	protein_coding	Cdc42bpb	intron	ENSMUSG00000021279	NonProperStrand	38	chr8	18700620	18700675	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-7.8219
chr17	39846580	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	160588991	160589007	protein_coding	Ace2	intron	ENSMUSG00000015405	NonProperStrand	17	5	-7.3005
chr5	4104257	4104334	protein_coding	Cyp51	utr5	ENSMUSG00000001467	ProperStrand	21	chr7	133038724	133038758	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-7.2656
chr17	39847254	39847306	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	64887785	64887847	LTR	RLTR25B	ERVK	chr18RLTR25B64887416	ProperStrand	3	1	-5.4882
chr8	71296217	71296264	LTR	RMER4B	ERVK	chr8RMER4B71296071	NonProperStrand	1	chr6	88506829	88506880	protein_coding	Kbtbd12	intron	ENSMUSG00000033182	ProperStrand	28	1	-inf
chr7	96373513	96373613	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	chr17	34115566	34115747	pseudogene	H2-K2	.	ENSMUSG00000067203	ProperStrand	36	1	-9.9303
chr17	39848479	39848506	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	70669502	70669519	protein_coding	Rabep1	intron	ENSMUSG00000020817	ProperStrand	26	1	-3.1396
chr9	50596781	50596802	protein_coding	Alg9	intron	ENSMUSG00000032059	NonProperStrand	20	chr8	84597002	84597033	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-8.7235
chr19	24965730	24965830	LINE	L1MB2	L1	chr19L1MB224965751	ProperStrand	1	chr19	24965543	24965633	LTR	RLTR14	ERV1	chr19RLTR1424965325	NonProperStrand	1	1	-inf
chr8	61495102	61495157	LINE	Lx8	L1	chr8Lx861494272	ProperStrand	1	chr17	39846453	39846506	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr6	93116502	93116634	lincRNA	9530026P05Rik	intron	ENSMUSG00000087573	ProperStrand	66	1	-11.1779
chr11	107434579	107434671	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.6643
chr12	59040437	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr9	118674951	118674998	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-6.7978
chr11	97830535	97830635	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	chr11	97830425	97830515	pseudogene	Gm11633	.	ENSMUSG00000082715	ProperStrand	7	7	-inf
chr4	46471437	46471520	protein_coding	Anp32b	intron	ENSMUSG00000028333	ProperStrand	54	chr7	57797678	57797701	protein_coding	Nell1	intron	ENSMUSG00000055409	ProperStrand	40	1	-13.0544
chr8	72131596	72131703	LINE	L1_Mus1	L1	chr8L1_Mus172131483	NonProperStrand	1	chr2	103454125	103454143	protein_coding	Abtb2	intron	ENSMUSG00000032724	ProperStrand	4	1	-inf
chr13	9203470	9203560	DNA	URR1B	MER1_type	chr13URR1B9203423	NonProperStrand	1	chr13	9203283	9203383	LTR	MTEa	MaLR	chr13MTEa9203065	NonProperStrand	1	1	-inf
chr14	20137280	20137360	LINE	L1Md_T	L1	chr14L1Md_T20136469	NonProperStrand	11	chr8	24950519	24950553	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-12.6587
chr19	6375985	6376005	protein_coding	Sf1	utr3	ENSMUSG00000024949	ProperStrand	69	chr9	15313331	15313434	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-10.1736
chr5	137729591	137729623	protein_coding	Ache	utr5	ENSMUSG00000023328	NonProperStrand	4	chr5	20917252	20917366	protein_coding	Ccdc146	intron	ENSMUSG00000064280	ProperStrand	82	1	-17.1150
chr11	88982614	88985026	LINE	Lx9	L1	chr11Lx988982248	NonProperStrand	1	chr17	39847672	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	119791992	119792082	LTR	ORR1D1-int	MaLR	chr11ORR1D1-int119791372	ProperStrand	2	chr11	119792082	119792182	SINE	B1_Mm	Alu	chr11B1_Mm119792068	ProperStrand	2	2	-inf
chr15	38069912	38069969	LTR	MurERV4-int	ERVK	chr15MurERV4-int38068225	NonProperStrand	11	chr15	38071311	38071358	LTR	MurERV4-int	ERVK	chr15MurERV4-int38070365	NonProperStrand	5	1	-21.1483
chr13	60086547	60086647	LTR	MTD	MaLR	chr13MTD60086472	NonProperStrand	1	chr13	60086746	60086836	Simple_repeat	(TCC)n	Simple_repeat	chr13(TCC)n60086759	NonProperStrand	1	1	-inf
chr1	178245410	178245499	LINE	Lx9	L1	chr1Lx9178245109	ProperStrand	1	chr17	39847513	39847534	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	31593038	31593570	LINE	L1_Mus1	L1	chr15L1_Mus131593203	ProperStrand	4	chr9	110380881	110381025	protein_coding	Kif9	intron	ENSMUSG00000032489	NonProperStrand	60	2	-inf
chr17	4082170	4082260	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr3	91096840	91096940	LINE	L1Md_F3	L1	chr3L1Md_F391096539	NonProperStrand	3	3	-inf
chr10	111278671	111278771	SINE	B2_Mm2	B2	chr10B2_Mm2111278700	NonProperStrand	4	chr5	31141169	31141259	protein_coding	Mapre3	intron	ENSMUSG00000029166	ProperStrand	11	4	-inf
chr7	113456893	113456983	LTR	IAPEz-int	ERVK	chr7IAPEz-int113456754	ProperStrand	1	chr12	67660096	67660196	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr11	50052907	50052924	lincRNA	Gm16641	intron	ENSMUSG00000085364	ProperStrand	35	chr5	31845765	31845847	protein_coding	Slc4a1ap	intron	ENSMUSG00000029141	ProperStrand	16	1	-15.8121
chr15	58111037	58111074	lincRNA	Gm15943	intron	ENSMUSG00000086801	NonProperStrand	53	chr3	31102040	31102145	protein_coding	Slc7a14	utr3	ENSMUSG00000069072	NonProperStrand	43	1	-12.9456
chr10	28088203	28088280	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	chr7	112844659	112844726	protein_coding	Dnhd1	exon	ENSMUSG00000030882	ProperStrand	238	2	-11.8883
chr11	59076322	59076338	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	chr11	78016775	78016829	protein_coding	Proca1	intron	ENSMUSG00000044122	ProperStrand	1	1	-inf
chr11	109011664	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	17776747	17776787	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	2	-7.0951
chr17	39843387	39843487	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	11521949	11522039	protein_coding	Cars2	utr3	ENSMUSG00000056228	ProperStrand	40	1	-3.2866
chr17	39847530	39847603	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	106782972	106783035	SINE	B1_Mus1	Alu	chr11B1_Mus1106782975	NonProperStrand	1	1	-inf
chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr12	110694210	110694332	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-6.4967
chr15	76177959	76180948	protein_coding-noncoding	Sharpin	utr3	ENSMUSG00000022552	ProperStrand	39	chr15	76178093	76181145	protein_coding	Sharpin	exon	ENSMUSG00000022552	ProperStrand	45	18	-inf
chr4	117377242	117377342	LTR	MER57A-int	ERV1	chr4MER57A-int117377232	ProperStrand	4	chr4	117377088	117377178	SINE	ID_B1	B4	chr4ID_B1117377031	NonProperStrand	4	4	-inf
chr14	19278161	19278209	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr9	70585692	70585778	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-10.7543
chr1	176835041	176835058	protein_coding	Grem2	intron	ENSMUSG00000050069	NonProperStrand	18	chr6	32861395	32861487	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-12.0117
chr11	76340124	76340191	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	chr14	20391329	20391345	protein_coding	Gm2237	intron	ENSMUSG00000079354	NonProperStrand	2	1	-16.7787
chr14	68161748	68161848	LTR	ORR1D2-int	MaLR	chr14ORR1D2-int68161754	ProperStrand	1	chr14	68162402	68162492	LTR	ORR1D2-int	MaLR	chr14ORR1D2-int68162134	ProperStrand	1	1	-inf
chr8	91606718	91606818	SINE	B1_Mus2	Alu	chr8B1_Mus291606741	NonProperStrand	2	chr8	91606580	91606670	SINE	B3	B2	chr8B391606506	NonProperStrand	2	2	-inf
chr10	44311662	44311700	LTR	MTA_Mm-int	MaLR	chr10MTA_Mm-int44310754	NonProperStrand	1	chr10	44311913	44311979	LTR	MTA_Mm	MaLR	chr10MTA_Mm44311842	NonProperStrand	1	1	-inf
chr19	10186436	10186456	DNA	MER5C	MER1_type	chr19MER5C10186341	NonProperStrand	1	chr17	39846291	39846347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847663	39847738	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	76452347	76452478	Simple_repeat	(TA)n	Simple_repeat	chr15(TA)n76452434	ProperStrand	1	1	-inf
chr15	86464598	86464698	LINE	Lx9	L1	chr15Lx986464617	NonProperStrand	5	chr15	86464479	86464569	LTR	MTD	MaLR	chr15MTD86464472	ProperStrand	4	4	-inf
chr3	94643337	94643427	protein_coding	Pogz	intron	ENSMUSG00000038902	NonProperStrand	3	chr3	94737308	94737408	protein_coding	Selenbp1	intron	ENSMUSG00000068874	NonProperStrand	3	1	-20.2168
chr17	64305625	64305642	protein_coding	Fer	intron	ENSMUSG00000000127	ProperStrand	20	chr12	79377362	79377438	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-9.1262
chr15	97049625	97049678	LTR	ORR1B2	MaLR	chr15ORR1B297049377	NonProperStrand	2	chr17	39843646	39843689	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr7	96232477	96232515	LTR	MLT1C	MaLR	chr7MLT1C96232399	NonProperStrand	2	chr19	41587935	41588058	protein_coding	Lcor	intron	ENSMUSG00000025019	ProperStrand	67	2	-inf
chr16	26357737	26357753	protein_coding	Cldn1	utr3	ENSMUSG00000022512	NonProperStrand	1	chr3	8896974	8897092	protein_coding	Mrps28	intron	ENSMUSG00000040269	ProperStrand	70	1	-inf
chr8	124940130	124940152	protein_coding	Zc3h18	intron	ENSMUSG00000017478	NonProperStrand	139	chr8	124945825	124945937	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-4.5796
chr9	123461801	123461860	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr11	51071434	51071450	protein_coding	BC049762	intron	ENSMUSG00000045942	ProperStrand	1	1	-inf
chr10	78404924	78405014	LINE	L1Md_T	L1	chr10L1Md_T78403281	NonProperStrand	34	chr19	57791872	57791972	protein_coding	Atrnl1	intron	ENSMUSG00000054843	ProperStrand	65	1	-13.0109
chr8	78538825	78538901	LINE	L1_Mur3	L1	chr8L1_Mur378537349	ProperStrand	7	chr16	36751881	36751897	protein_coding	Slc15a2	exon	ENSMUSG00000022899	NonProperStrand	15	1	-19.0068
chr8	62318815	62318833	LINE	L1Md_A	L1	chr8L1Md_A62317992	ProperStrand	1	chr2	5514392	5514417	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr3	34071957	34072000	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr13	44869942	44870021	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.4095
chr4	57771821	57771882	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	chr2	29540050	29540142	protein_coding	Rapgef1	intron	ENSMUSG00000039844	NonProperStrand	7	1	-14.9572
chr3	96124392	96124448	LTR	RLTR10C	ERVK	chr3RLTR10C96124064	NonProperStrand	1	chr3	96127939	96128005	SINE	B1_Mm	Alu	chr3B1_Mm96127934	ProperStrand	1	1	-inf
chr18	31635672	31635693	LINE	L1Md_F2	L1	chr18L1Md_F231635632	NonProperStrand	1	chr18	31636319	31636453	LINE	L1Md_F2	L1	chr18L1Md_F231636332	NonProperStrand	2	1	-inf
chr17	39847945	39848005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	129318492	129320518	SINE	B1_Mur2	Alu	chr4B1_Mur2129320434	ProperStrand	3	1	-4.3512
chr17	83364534	83364634	LINE	Lx	L1	chr17Lx83364497	NonProperStrand	7	chr17	83364404	83364494	SINE	B1_Mur4	Alu	chr17B1_Mur483364359	NonProperStrand	2	1	-21.4874
chr13	33243191	33243211	protein_coding	Serpinb9c	intron	ENSMUSG00000021404	ProperStrand	1	chr16	20690831	20690972	protein_coding	Eif4g1	intron	ENSMUSG00000045983	ProperStrand	123	1	-inf
chr4	132352908	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	276	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.0794
chr14	31013306	31013440	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr4	141070405	141070498	protein_coding	Spen	intron	ENSMUSG00000040761	ProperStrand	77	1	-8.6158
chr16	35981604	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr9	110281314	110281370	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	4	-16.6553
chr17	45564986	45565038	protein_coding	Cdc5l	intron	ENSMUSG00000023932	NonProperStrand	10	chrX	134597286	134597323	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-14.8982
chr1	13626358	13626398	protein_coding	Lactb2	intron	ENSMUSG00000025937	ProperStrand	47	chr2	165008703	165008797	protein_coding	Cdh22	intron	ENSMUSG00000053166	ProperStrand	53	1	-12.7650
chr3	48567245	48567276	LINE	L1Md_F2	L1	chr3L1Md_F248567104	NonProperStrand	1	chr19	4921557	4921680	protein_coding	Dpp3	intron	ENSMUSG00000063904	ProperStrand	50	1	-inf
chr4	41111881	41111987	protein_coding	Ube2r2	intron	ENSMUSG00000036241	NonProperStrand	66	chr14	11845496	11845552	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-7.6830
chr19	46795312	46795359	protein_coding	As3mt	intron	ENSMUSG00000003559	ProperStrand	85	chr5	125077583	125077667	protein_coding	Tctn2	utr3	ENSMUSG00000029386	NonProperStrand	79	1	-10.7689
chr2	131283114	131283215	LINE	Lx7	L1	chr2Lx7131282006	ProperStrand	2	chr17	39847477	39847568	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr19	3573477	3573516	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	chr17	55916736	55916798	protein_coding	Emr4	intron	ENSMUSG00000032915	NonProperStrand	3	1	-15.8403
chr4	86815489	86815600	protein_coding	Slc24a2	intron	ENSMUSG00000037996	NonProperStrand	54	chr2	5379296	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-7.8720
chr5	146261045	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	56435434	56435526	protein_coding	Arrdc5	intron	ENSMUSG00000073380	ProperStrand	28	1	-6.5650
chr9	118674951	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr2	158359833	158359931	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-4.5622
chr15	80078501	80078589	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr17	6216606	6216677	protein_coding	Tulp4	intron	ENSMUSG00000034377	ProperStrand	56	1	-8.2261
chr5	146261001	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	42007441	42007500	protein_coding	Exosc1	intron	ENSMUSG00000034321	NonProperStrand	27	1	-6.6378
chr2	52654042	52654093	LINE	L1Md_F2	L1	chr2L1Md_F252653824	NonProperStrand	1	chr2	52650793	52650854	LTR	RMER5	ERV1	chr2RMER552650737	ProperStrand	1	1	-inf
chr12	21391239	21391262	SINE	B1F	Alu	chr12B1F21391145	ProperStrand	3	chr12	21396401	21398328	protein_coding	Ywhaq	intron	ENSMUSG00000076432	ProperStrand	53	1	-18.5016
chr8	110654322	110654422	LTR	MLT1D	MaLR	chr8MLT1D110654305	NonProperStrand	2	chr8	110654137	110654227	SINE	RSINE1	B4	chr8RSINE1110654093	NonProperStrand	4	2	-inf
chr14	31017972	31018034	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-9.0498
chr17	45567831	45567876	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr2	59758125	59758213	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	1	-6.8968
chr17	39847446	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	4131034	4131262	processed_transcript	Tmem134	.	ENSMUSG00000024845	ProperStrand	1	1	-inf
chr5	31473516	31475698	protein_coding	Gtf3c2	intron	ENSMUSG00000029144	NonProperStrand	26	chr13	23698137	23698191	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	ProperStrand	11	1	-17.2126
chr10	11281642	11281658	SINE	B2_Mm1t	B2	chr10B2_Mm1t11281584	NonProperStrand	1	chr15	99175421	99175529	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	1	-inf
chr15	102087966	102088011	Low_complexity	CT-rich	Low_complexity	chr15CT-rich102087929	ProperStrand	1	chr15	102087102	102087209	protein_coding	Rarg	intron	ENSMUSG00000001288	NonProperStrand	44	1	-inf
chr3	88545111	88545211	LTR	RLTR13A3	ERVK	chr3RLTR13A388544697	NonProperStrand	5	chr3	88545231	88548097	LTR	RLTR1B	ERV1	chr3RLTR1B88548041	NonProperStrand	5	5	-inf
chr17	58594127	58594217	LTR	MTD	MaLR	chr17MTD58593883	ProperStrand	3	chr6	8582686	8582786	protein_coding	Ica1	intron	ENSMUSG00000062995	NonProperStrand	9	3	-inf
chr13	49714875	49721083	protein_coding	Ogn	intron	ENSMUSG00000021390	ProperStrand	39	chr13	49688274	49722180	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	3	-inf
chr3	90000829	90000921	protein_coding	Nup210l	intron	ENSMUSG00000027939	NonProperStrand	45	chr3	90017182	90017245	protein_coding	Rps27	intron	ENSMUSG00000090733	ProperStrand	3	2	-inf
chr3	30430921	30431021	protein_coding	Mecom	intron	ENSMUSG00000027684	NonProperStrand	20	chr14	26763774	26763864	protein_coding	Cphx	intron	ENSMUSG00000072678	ProperStrand	1	1	-inf
chr2	169015855	169016012	Low_complexity	GA-rich	Low_complexity	chr2GA-rich169015880	ProperStrand	5	chr2	169015959	169016147	Simple_repeat	(CAGAGA)n	Simple_repeat	chr2(CAGAGA)n169015969	ProperStrand	5	5	-inf
chr8	114595587	114595669	SINE	B4A	B4	chr8B4A114595562	NonProperStrand	2	chr3	152210670	152214018	protein_coding	Ak5	intron	ENSMUSG00000039058	NonProperStrand	72	2	-inf
chr6	23625193	23625210	protein_coding	Cadps2	intron	ENSMUSG00000017978	NonProperStrand	18	chr17	30805804	30805918	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	1	-13.5658
chr3	40811975	40811993	LINE	Lx7	L1	chr3Lx740811910	NonProperStrand	1	chr9	123462076	123462127	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	33224914	33224936	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	chr13	9560936	9561040	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-5.0199
chr6	84939186	84953246	protein_coding-noncoding	Exoc6b	utr3	ENSMUSG00000033769	ProperStrand	5	chr6	84939374	84953322	protein_coding	Exoc6b	exon	ENSMUSG00000033769	ProperStrand	181	2	-inf
chr14	105893509	105893599	SINE	RSINE1	B4	chr14RSINE1105893505	NonProperStrand	1	chr14	105893272	105893372	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n105893254	NonProperStrand	2	1	-inf
chr17	39846335	39846411	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	22467523	22467593	LTR	MYSERV6-int	ERVK	chr17MYSERV6-int22467159	NonProperStrand	1	1	-inf
chr7	80044978	80045070	LTR	ORR1D1	MaLR	chr7ORR1D180044873	ProperStrand	3	chr7	80045401	80045420	SINE	B4	B4	chr7B480045381	ProperStrand	1	1	-inf
chr10	126502961	126503063	protein_coding-noncoding	Cdk4	utr5	ENSMUSG00000006728	NonProperStrand	1	chr10	126503061	126503151	protein_coding	Cdk4	intron	ENSMUSG00000006728	NonProperStrand	1	1	-inf
chr2	12410063	12419231	LINE	L1Md_A	L1	chr2L1Md_A12418956	NonProperStrand	11	chr2	12405885	12410065	SINE	B2_Mm2	B2	chr2B2_Mm212409988	ProperStrand	3	3	-inf
chr4	125671935	125672018	LTR	MTC-int	MaLR	chr4MTC-int125671473	ProperStrand	1	chr4	125672245	125672301	SINE	B1_Mm	Alu	chr4B1_Mm125672192	ProperStrand	1	1	-inf
chr12	84949827	84949916	SINE	B1_Mus1	Alu	chr12B1_Mus184949750	NonProperStrand	1	chr12	84949617	84949717	SINE	B3A	B2	chr12B3A84949540	NonProperStrand	1	1	-inf
chr17	39846430	39846810	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	65554193	65562172	protein_coding	Lekr1	intron	ENSMUSG00000074579	ProperStrand	25	5	-5.1154
chr1	175887616	175887694	LINE	L1Md_F2	L1	chr1L1Md_F2175887331	ProperStrand	2	chr17	39847683	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	109011650	109011704	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	53407903	53408105	protein_coding	Kif3a	intron	ENSMUSG00000018395	ProperStrand	47	2	-10.6465
chr14	124569533	124569633	protein_coding	Fgf14	intron	ENSMUSG00000025551	NonProperStrand	12	chr14	124261598	124261688	protein_coding	Itgbl1	intron	ENSMUSG00000032925	ProperStrand	5	1	-inf
chr11	117225797	117225837	SINE	B3	B2	chr11B3117225790	NonProperStrand	8	chr11	117227285	117227336	SINE	PB1D10	Alu	chr11PB1D10117227241	ProperStrand	1	1	-inf
chr9	119464657	119464732	protein_coding	Scn5a	intron	ENSMUSG00000032511	NonProperStrand	98	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-6.8727
chr10	81297239	81297269	LTR	IAPEz-int	ERVK	chr10IAPEz-int81292780	NonProperStrand	28	chr10	81301412	81301529	Simple_repeat	(GGA)n	Simple_repeat	chr10(GGA)n81301288	ProperStrand	5	5	-inf
chr14	75847903	75847964	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr6	65111451	65111543	LINE	Lx4A	L1	chr6Lx4A65111215	ProperStrand	3	2	-21.9899
chr17	12760048	12760124	LTR	ETnERV-int	ERVK	chr17ETnERV-int12759493	NonProperStrand	1	chr17	39847445	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	141451050	141451292	LINE	Lx2	L1	chr7Lx2141451081	ProperStrand	221	chr8	123390800	123390826	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-4.3927
chr17	39846097	39846189	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr1	85213675	85213692	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	NonProperStrand	16	1	-4.3735
chr1	134405950	134406040	LTR	ORR1D2	MaLR	chr1ORR1D2134405960	NonProperStrand	1	chr1	134406004	134406104	protein_coding	Cntn2	utr3	ENSMUSG00000053024	NonProperStrand	107	1	-inf
chr17	39847207	39847255	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	35235637	35235682	LTR	ORR1A2-int	MaLR	chr18ORR1A2-int35234013	ProperStrand	2	1	-6.5615
chrY	1860816	1860916	LINE	L1Md_T	L1	chrYL1Md_T1858171	NonProperStrand	1	chrY	1861317	1861407	LTR	IAPLTR2_Mm	ERVK	chrYIAPLTR2_Mm1861112	NonProperStrand	1	1	-inf
chr5	124200774	124200908	protein_coding	Kntc1	intron	ENSMUSG00000029414	NonProperStrand	67	chrX	56754379	56788001	protein_coding	Fgf13	intron	ENSMUSG00000031137	NonProperStrand	55	1	-11.9757
chr5	30060661	30060761	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr8	47910533	47910623	protein_coding	Irf2	intron	ENSMUSG00000031627	NonProperStrand	109	1	-12.3648
chrX	85734348	85734470	LINE	L1_Mus1	L1	chrXL1_Mus185733400	NonProperStrand	2	chr9	123462126	123462157	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr14	21061367	21061467	LINE	Lx	L1	chr14Lx21061384	NonProperStrand	1	chr14	21061269	21061359	SINE	ID_B1	B4	chr14ID_B121061206	NonProperStrand	1	1	-inf
chrX	73821344	73821436	LINE	L1M3	L1	chrXL1M373821352	NonProperStrand	2	chrX	73821245	73821345	LTR	RLTR8	ERVK	chrXRLTR873821208	NonProperStrand	2	2	-inf
chr11	99687324	99687424	LINE	L1Md_Gf	L1	chr11L1Md_Gf99686118	NonProperStrand	1	chr11	99687553	99687643	LINE	L1Md_T	L1	chr11L1Md_T99687550	NonProperStrand	1	1	-inf
chr19	8808135	8808235	SINE	B1_Mus1	Alu	chr19B1_Mus18808099	ProperStrand	1	chr19	8808297	8808387	SINE	B3	B2	chr19B38808299	ProperStrand	1	1	-inf
chr3	27687971	27688071	LTR	RLTR20B3	ERVK	chr3RLTR20B327687942	ProperStrand	1	chr3	27688556	27688646	SINE	B4	B4	chr3B427688446	ProperStrand	1	1	-inf
chr4	104497815	104497876	protein_coding	C8a	intron	ENSMUSG00000035031	NonProperStrand	68	chr13	44869574	44869616	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.2541
chr14	7482783	7482856	protein_coding	Gm10251	intron	ENSMUSG00000068777	ProperStrand	2	chr14	4504819	4504904	protein_coding	Gm3159	intron	ENSMUSG00000091379	ProperStrand	1	1	-inf
chrX	4136308	4136358	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr7	25671763	25671833	protein_coding-noncoding	Rps19	utr5	ENSMUSG00000040952	ProperStrand	10	1	-16.4782
chr17	39843731	39843774	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	165007593	165007636	protein_coding	Cdh22	intron	ENSMUSG00000053166	ProperStrand	53	1	-3.2034
chr9	64175490	64175523	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr2	158359840	158359930	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-7.4951
chr10	83382489	83382540	LTR	MTEb	MaLR	chr10MTEb83382482	ProperStrand	1	chr17	39847440	39847547	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846718	39846767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	139810419	139810436	protein_coding	Lhpp	intron	ENSMUSG00000030946	ProperStrand	4	1	-3.6552
chr10	9893293	9893383	LINE	L1Md_F2	L1	chr10L1Md_F29893246	NonProperStrand	2	chr10	9893120	9893220	LINE	L1VL4	L1	chr10L1VL49892536	NonProperStrand	3	2	-inf
chr11	62266895	62266935	protein_coding	Ncor1	intron	ENSMUSG00000018501	ProperStrand	15	chr4	117947081	117947110	protein_coding	Ptprf	intron	ENSMUSG00000033295	ProperStrand	98	1	-13.8589
chr5	110413619	110413647	DNA	Kanga2_a	Tc2	chr5Kanga2_a110413363	NonProperStrand	3	chr2	145735147	145735185	protein_coding	Naa20	utr3	ENSMUSG00000002728	ProperStrand	1	1	-inf
chr15	83117552	83117626	LTR	RMER4B	ERVK	chr15RMER4B83117348	NonProperStrand	12	chr15	83115978	83116062	SINE	B2_Mm2	B2	chr15B2_Mm283115948	ProperStrand	1	1	-inf
chr5	47985207	47989126	LINE	Lx7	L1	chr5Lx747987784	ProperStrand	1	chr5	47989133	48000350	LTR	RMER6C	ERVK	chr5RMER6C47988700	ProperStrand	1	1	-inf
chr13	112578220	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr11	119938159	119938193	protein_coding	Azi1	intron	ENSMUSG00000039781	ProperStrand	19	1	-6.4601
chr6	120037560	120037650	DNA	MER3	MER1_type	chr6MER3120037520	ProperStrand	6	chr6	120037403	120037503	SINE	B2_Mm1a	B2	chr6B2_Mm1a120037293	NonProperStrand	4	2	-inf
chr17	39843446	39843505	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	111667664	111667713	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	ProperStrand	53	2	-4.8543
chr17	39845545	39845645	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr4	49514450	49514540	protein_coding	Baat	intron	ENSMUSG00000039653	ProperStrand	11	1	-5.4204
chr11	105210528	105210571	protein_coding	Mrc2	intron	ENSMUSG00000020695	ProperStrand	48	chr5	21768472	21768524	protein_coding	Reln	intron	ENSMUSG00000042453	ProperStrand	45	1	-13.0532
chr17	39848181	39848207	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	59228774	59228790	protein_coding	Gas2	intron	ENSMUSG00000030498	NonProperStrand	5	1	-6.1691
chr17	39846412	39846431	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	65968339	65968357	LTR	MTEa	MaLR	chr17MTEa65968343	NonProperStrand	1	1	-inf
chr4	15401250	15401350	LINE	Lx8	L1	chr4Lx815401133	NonProperStrand	1	chr4	15401532	15401622	LTR	RMER15	ERVL	chr4RMER1515401469	ProperStrand	1	1	-inf
chr8	25815750	25815766	protein_coding	Adam3	intron	ENSMUSG00000031553	ProperStrand	67	chr2	5379317	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.3376
chr6	119825750	119847906	LTR	IAPLTR2_Mm	ERVK	chr6IAPLTR2_Mm119825476	ProperStrand	1	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-inf
chr8	40281111	40281127	LINE	L1Md_F	L1	chr8L1Md_F40279479	NonProperStrand	1	chr9	123462108	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	123462116	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	124970510	124970587	protein_coding	Zfp384	intron	ENSMUSG00000038346	ProperStrand	4	1	-6.3300
chr3	115900960	115901050	LINE	L1ME2z	L1	chr3L1ME2z115900620	ProperStrand	1	chr3	115901412	115901512	Simple_repeat	(TCTCC)n	Simple_repeat	chr3(TCTCC)n115901412	ProperStrand	1	1	-inf
chr6	54618156	54618273	LTR	RLTR13C2	ERVK	chr6RLTR13C254617664	ProperStrand	1	chr6	54618670	54618698	SINE	B1_Mm	Alu	chr6B1_Mm54618570	ProperStrand	1	1	-inf
chr4	122601328	122601418	LTR	LTR33B	ERVL	chr4LTR33B122601296	NonProperStrand	1	chr4	122601528	122601628	LTR	LTR33B	ERVL	chr4LTR33B122601481	NonProperStrand	1	1	-inf
chr12	76822206	76822222	protein_coding	Sgpp1	intron	ENSMUSG00000021054	NonProperStrand	17	chr9	64295928	64296059	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-13.3315
chr17	35835846	35836705	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr17	35836004	35836264	snRNA	ENSMUSG00000065774_U6	.	ENSMUSG00000065774	ProperStrand	33	31	-inf
chr10	127174925	127175025	LTR	RMER15-int	ERVL	chr10RMER15-int127174840	ProperStrand	1	chr10	127175060	127175150	SINE	ID_B1	B4	chr10ID_B1127175055	ProperStrand	1	1	-inf
chr16	57027188	57027288	LTR	ORR1A1-int	MaLR	chr16ORR1A1-int57027063	NonProperStrand	1	chr16	57026993	57027083	LTR	ORR1A1	MaLR	chr16ORR1A157026718	NonProperStrand	1	1	-inf
chr15	96595098	96595132	LTR	MTD	MaLR	chr15MTD96594875	ProperStrand	2	chr15	96598328	96598372	Simple_repeat	(GGAA)n	Simple_repeat	chr15(GGAA)n96598294	NonProperStrand	2	2	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	59713649	59713742	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	ProperStrand	123	1	-6.4527
chr8	35048166	35048256	LINE	L1M3	L1	chr8L1M335047995	NonProperStrand	1	chr8	35048517	35048617	SINE	B2_Mm2	B2	chr8B2_Mm235048493	ProperStrand	1	1	-inf
chr17	61231056	61231146	LINE	Lx5	L1	chr17Lx561230744	ProperStrand	1	chr17	43033117	43033217	LTR	RLTR25A	ERVK	chr17RLTR25A43032700	NonProperStrand	1	1	-inf
chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	chr17	34026183	34026211	protein_coding	Kifc1	intron	ENSMUSG00000079553	ProperStrand	3	1	-18.6544
chr19	55386169	55386227	protein_coding	Zdhhc6	exon	ENSMUSG00000024982	NonProperStrand	3	chr12	17702233	17702287	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-14.9608
chr5	146582845	146582873	LINE	L1Md_F2	L1	chr5L1Md_F2146579233	ProperStrand	2	chr9	123461802	123461928	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr14	55634362	55634378	protein_coding	Ngdn	utr5	ENSMUSG00000022204	NonProperStrand	18	chr3	8956113	8956222	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	1	-11.3918
chr5	146261017	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	88550713	88552374	protein_coding	Syt11	utr3	ENSMUSG00000068923	ProperStrand	24	1	-6.8742
chr17	39847546	39848074	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	4007528	4008645	protein_coding	Ndufv1	utr3	ENSMUSG00000037916	ProperStrand	8	2	-4.3369
chr5	114944912	114945012	LTR	MTC	MaLR	chr5MTC114944912	ProperStrand	2	chr5	114944802	114944892	LTR	ORR1A1	MaLR	chr5ORR1A1114944559	NonProperStrand	2	2	-inf
chr2	167064000	167064085	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr13	119464589	119464664	protein_coding	Fgf10	intron	ENSMUSG00000021732	NonProperStrand	5	1	-16.5927
chr8	121400664	121400754	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	chr8	85613175	85613275	protein_coding	Rnf150	utr3	ENSMUSG00000047747	NonProperStrand	43	1	-11.7291
chr7	27191305	27191420	LTR	RLTRETN_Mm	ERVK	chr7RLTRETN_Mm27191168	ProperStrand	1	chr11	43703797	43703829	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	1	-inf
chr8	74831407	74831507	SINE	B1_Mur2	Alu	chr8B1_Mur274831339	ProperStrand	1	chr8	74831569	74831659	SINE	B1_Mus2	Alu	chr8B1_Mus274831587	ProperStrand	1	1	-inf
chr12	82605799	82605889	protein_coding-noncoding	Synj2bp	utr3	ENSMUSG00000090935	NonProperStrand	1	chr12	82605947	82606047	protein_coding	Synj2bp	intron	ENSMUSG00000090935	NonProperStrand	3	1	-inf
chr9	123461822	123461849	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr8	13881381	13881464	protein_coding	Zfp828	utr3	ENSMUSG00000047710	NonProperStrand	2	1	-8.0983
chr17	39847659	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	88921220	88921307	SINE	B1_Mur4	Alu	chr3B1_Mur488921229	NonProperStrand	1	1	-inf
chr6	33910588	33910624	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr2	39001587	39001633	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	1	-6.5945
chr10	119733351	119733374	SINE	B3A	B2	chr10B3A119733268	NonProperStrand	1	chr1	179000420	179000525	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	1	-inf
chr4	132309939	132310070	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.3489
chr1	105898026	105898126	LINE	L1M4	L1	chr1L1M4105897589	ProperStrand	1	chr1	105898205	105898295	LINE	L1M5	L1	chr1L1M5105898222	ProperStrand	1	1	-inf
chr17	39843833	39843933	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr6	137104816	137104835	protein_coding	Rerg	intron	ENSMUSG00000030222	ProperStrand	9	1	-6.6743
chr1	127258009	127258078	LINE	L1Md_A	L1	chr1L1Md_A127252127	NonProperStrand	5	chr1	127290030	127290095	protein_coding	Actr3	utr3	ENSMUSG00000026341	NonProperStrand	28	1	-18.8243
chr6	125181043	125181143	protein_coding	Tapbpl	intron	ENSMUSG00000038213	ProperStrand	61	chr18	37801009	37801065	protein_coding	Taf7	utr3	ENSMUSG00000051316	NonProperStrand	11	1	-15.4603
chr6	125186497	125186554	protein_coding	Cd27	exon	ENSMUSG00000030336	ProperStrand	88	chr6	71882583	71882650	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-9.7319
chr13	96389463	96389633	LTR	MTC	MaLR	chr13MTC96389364	NonProperStrand	1	chr17	39846526	39846554	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	90505544	90505613	LINE	L1Md_F3	L1	chr3L1Md_F390505143	ProperStrand	1	chr3	90509243	90509315	LINE	L1_Rod	L1	chr3L1_Rod90508841	ProperStrand	12	1	-inf
chr17	12919650	12919718	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	57	chr9	118674951	118674988	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.0719
chr17	39845945	39846045	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr10	24817953	24824820	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n24820585	NonProperStrand	1	1	-inf
chrX	74450342	74450359	LTR	RLTR13D6	ERVK	chrXRLTR13D674450264	ProperStrand	3	chr15	62132561	62132674	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	1	-12.5588
chr3	95734268	95734367	protein_coding	Anp32e	intron	ENSMUSG00000015749	NonProperStrand	12	chr7	98939210	98939300	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-10.6967
chr5	98817467	98817557	protein_coding	1700007G11Rik	intron	ENSMUSG00000057816	ProperStrand	13	chr5	94205444	94205544	protein_coding	Gm7792	intron	ENSMUSG00000072824	ProperStrand	1	1	-inf
chr18	46517019	46517100	Low_complexity	T-rich	Low_complexity	chr18T-rich46516999	NonProperStrand	1	chr18	46517100	46517173	SINE	B1_Mus1	Alu	chr18B1_Mus146517083	ProperStrand	1	1	-inf
chr1	52893604	52893647	LTR	RMER6A	ERVK	chr1RMER6A52893285	NonProperStrand	1	chr11	78542584	78542637	SINE	MIRb	MIR	chr11MIRb78542548	NonProperStrand	1	1	-inf
chr15	38317861	38317880	LTR	RMER19B	ERVK	chr15RMER19B38317843	ProperStrand	1	chr17	47596705	47596821	protein_coding	AI661453	intron	ENSMUSG00000034382	NonProperStrand	23	1	-inf
chr17	39847273	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	142886997	142887132	LTR	RMER6A	ERVK	chr2RMER6A142886775	ProperStrand	2	2	-inf
chr6	59917073	59917163	LINE	L1_Mus4	L1	chr6L1_Mus459916860	NonProperStrand	1	chr6	59916679	59916779	LTR	ORR1B1-int	MaLR	chr6ORR1B1-int59915701	NonProperStrand	1	1	-inf
chr10	100460979	100460995	LTR	MLT2E	ERVL	chr10MLT2E100460838	ProperStrand	1	chr17	39847550	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	148611246	148611336	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int148609603	NonProperStrand	1	chr9	123461891	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	142501399	142501489	LTR	MTD	MaLR	chr6MTD142501273	ProperStrand	8	chr6	142501192	142501292	SINE	B3	B2	chr6B3142501069	ProperStrand	1	1	-inf
chr8	22053449	22053539	LINE	L1Md_F2	L1	chr8L1Md_F222052726	NonProperStrand	2	chr8	22053351	22053451	LINE	L1Md_F2	L1	chr8L1Md_F222052726	ProperStrand	2	2	-inf
chr4	85495022	85495112	LINE	Lx4B	L1	chr4Lx4B85495008	NonProperStrand	1	chr4	85495289	85495389	LINE	Lx4B	L1	chr4Lx4B85495090	ProperStrand	1	1	-inf
chr17	39847325	39847379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	99498748	99498764	SINE	B2_Mm1a	B2	chr15B2_Mm1a99498607	NonProperStrand	8	1	-3.3803
chr5	108110725	108110763	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr9	9006578	9008022	protein_coding	Arhgap42	exon	ENSMUSG00000050730	ProperStrand	30	1	-13.9159
chr4	145246970	145246987	lincRNA	Gm17609	intron	ENSMUSG00000090398	ProperStrand	22	chr7	29829810	29829827	protein_coding	Ryr1	intron	ENSMUSG00000030592	NonProperStrand	34	1	-15.2187
chrX	63619203	63619293	LINE	L1Md_F2	L1	chrXL1Md_F263617581	NonProperStrand	1	chr7	47188346	47188446	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	1	-inf
chr11	87551814	87551860	protein_coding	Supt4h1	intron	ENSMUSG00000020485	ProperStrand	6	chr11	35193093	35193200	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-13.6161
chr11	76413986	76414054	protein_coding	Abr	intron	ENSMUSG00000017631	NonProperStrand	15	chr8	88224341	88224407	protein_coding	Neto2	intron	ENSMUSG00000036902	NonProperStrand	54	1	-15.0576
chr7	24990362	24990409	protein_coding-noncoding	Zfp111	utr3	ENSMUSG00000087598	ProperStrand	3	chr7	24987498	24987594	protein_coding	Zfp111	intron	ENSMUSG00000087598	ProperStrand	11	2	-inf
chr17	39842996	39843053	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr1	21755006	21755066	protein_coding	Kcnq5	intron	ENSMUSG00000028033	ProperStrand	21	1	-7.4748
chr3	14527310	14527400	LINE	Lx	L1	chr3Lx14527073	NonProperStrand	1	chr3	14527404	14527504	LTR	RMER12B	ERVK	chr3RMER12B14527422	NonProperStrand	1	1	-inf
chr14	78708771	78708831	SINE	B1_Mur1	Alu	chr14B1_Mur178708716	ProperStrand	1	chr14	78703107	78703201	protein_coding	Tnfsf11	intron	ENSMUSG00000022015	ProperStrand	100	1	-inf
chr2	133981159	133981180	LINE	L1_Mur3	L1	chr2L1_Mur3133980743	NonProperStrand	4	chr7	30022599	30022630	SINE	B2_Mm1t	B2	chr7B2_Mm1t30022519	NonProperStrand	1	1	-inf
chr17	39846692	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	21870397	21871445	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	NonProperStrand	3	1	-4.3017
chr18	28411470	28411570	LTR	ORR1D1-int	MaLR	chr18ORR1D1-int28411446	NonProperStrand	1	chr18	28411173	28411263	LTR	ORR1D1	MaLR	chr18ORR1D128411101	NonProperStrand	1	1	-inf
chr5	107212518	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr2	59798557	59798688	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	1	-10.3546
chr18	34947940	34947967	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	chr3	103962782	103962799	protein_coding	Magi3	intron	ENSMUSG00000052539	ProperStrand	19	1	-13.6545
chr17	39847784	39847874	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	150752675	150752775	protein_coding	Gins1	intron	ENSMUSG00000027454	ProperStrand	4	1	-3.7035
chr9	118556399	118556449	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	chr3	94542727	94542788	pseudogene	Gm15264	.	ENSMUSG00000081355	ProperStrand	9	1	-13.3712
chr17	73648733	73648833	LINE	L1MC1	L1	chr17L1MC173648720	ProperStrand	1	chr17	73648967	73649057	SINE	MIRc	MIR	chr17MIRc73648971	ProperStrand	1	1	-inf
chr16	23111311	23111335	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	123	chr16	23111371	23111432	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	16	2	-inf
chrX	151593842	151593907	SINE	RSINE1	B4	chrXRSINE1151593752	ProperStrand	1	chr17	70963679	70963762	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr6	113074384	113074469	protein_coding	Setd5	intron	ENSMUSG00000034269	NonProperStrand	20	chr13	97190561	97190619	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.3035
chr8	77036733	77036857	LINE	L1Md_F2	L1	chr8L1Md_F277033596	NonProperStrand	2	chr17	39846462	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr4	116987000	116987120	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-7.0436
chr17	31060227	31060305	protein_coding	Glp1r	intron	ENSMUSG00000024027	ProperStrand	28	chr3	153595708	153595769	protein_coding	Acadm	intron	ENSMUSG00000062908	ProperStrand	41	1	-14.3414
chr5	86821317	86822610	LINE	L1_Mus1	L1	chr5L1_Mus186820710	NonProperStrand	1	chr17	39846411	39846488	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	96310658	96317546	LTR	MLT1B	MaLR	chr9MLT1B96317292	ProperStrand	1	chr9	96310568	96310658	SINE	B1_Mus2	Alu	chr9B1_Mus296310488	ProperStrand	1	1	-inf
chr2	39200864	39200964	LTR	ORR1B2-int	MaLR	chr2ORR1B2-int39199477	ProperStrand	4	chr2	39200977	39201067	LTR	ORR1B2	MaLR	chr2ORR1B239200967	ProperStrand	4	4	-inf
chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	chr15	37976147	37976173	protein_coding	Ubr5	intron	ENSMUSG00000037487	ProperStrand	87	1	-10.7222
chr18	3486704	3486794	LINE	L1_Mus2	L1	chr18L1_Mus23486705	ProperStrand	1	chr18	3486984	3487084	LINE	L1_Mus2	L1	chr18L1_Mus23486920	ProperStrand	1	1	-inf
chr2	87027590	87027680	LINE	L1MA8	L1	chr2L1MA887027527	NonProperStrand	1	chr2	87204379	87204479	LINE	L1_Mus3	L1	chr2L1_Mus387203457	ProperStrand	1	1	-inf
chr15	58933381	58933399	LTR	RLTR14	ERV1	chr15RLTR1458933384	NonProperStrand	4	chr17	39847676	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr7	34546779	34546879	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int34545627	NonProperStrand	1	chr10	72976628	72976718	sense_intronic	Gm15397	.	ENSMUSG00000085176	NonProperStrand	3	1	-inf
chr15	47539993	47540054	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr7	3704763	3705798	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	64	1	-10.0272
chr2	172630647	172630748	LTR	MTC	MaLR	chr2MTC172630613	ProperStrand	2	chr2	172630486	172630576	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n172630504	ProperStrand	2	2	-inf
chr14	90576879	90576979	LINE	L1Md_F2	L1	chr14L1Md_F290576886	NonProperStrand	1	chr14	90576728	90576818	LINE	L1_Mus1	L1	chr14L1_Mus190575036	NonProperStrand	1	1	-inf
chr5	32864773	32864819	antisense	Gm15614	.	ENSMUSG00000085234	NonProperStrand	24	chr6	115807974	115808030	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-12.6974
chr5	28209280	28209301	LTR	MTB-int	MaLR	chr5MTB-int28208482	ProperStrand	2	chr4	141072190	141072303	protein_coding	Spen	intron	ENSMUSG00000040761	ProperStrand	77	1	-19.1037
chr10	128714287	128714387	LINE	L1Md_T	L1	chr10L1Md_T128709783	NonProperStrand	2	chr10	128715603	128715931	LINE	L1Md_T	L1	chr10L1Md_T128715197	NonProperStrand	3	2	-inf
chr13	97190589	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr4	131962779	131962856	protein_coding	Phactr4	intron	ENSMUSG00000066043	ProperStrand	64	1	-4.9972
chrX	101080760	101080860	LINE	L1_Mm	L1	chrXL1_Mm101080655	NonProperStrand	7	chrX	101081705	101081795	LINE	L1_Mm	L1	chrXL1_Mm101081590	NonProperStrand	8	6	-inf
chr18	63078738	63078755	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-11.6134
chr10	41758053	41758143	SINE	ID_B1	B4	chr10ID_B141758042	NonProperStrand	2	chr10	41757958	41758058	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n41757866	NonProperStrand	1	1	-inf
chr15	81795365	81795460	LTR	RMER16	ERVK	chr15RMER1681795310	ProperStrand	1	chr17	39846941	39846974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	26690477	26690587	DNA	URR1B	MER1_type	chr17URR1B26690442	ProperStrand	1	chr13	58194748	58194768	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	1	-inf
chr7	89938714	89938735	DNA	RCHARR1	MER1_type	chr7RCHARR189938638	NonProperStrand	1	chr12	21588057	21588163	LINE	L1M4	L1	chr12L1M421587764	NonProperStrand	1	1	-inf
chr17	39847341	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	146261265	146261349	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	68	-20.4569
chr8	76526825	76526925	LINE	L1Md_F2	L1	chr8L1Md_F276522026	NonProperStrand	1	chr8	76527300	76527390	LINE	L1Md_F2	L1	chr8L1Md_F276526979	NonProperStrand	1	1	-inf
chr9	123461965	123461985	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	89230481	89230497	protein_coding	Shc1	exon	ENSMUSG00000042626	ProperStrand	8	1	-4.8360
chr17	39847348	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	98189425	98189537	protein_coding	Neurod2	exon	ENSMUSG00000038255	ProperStrand	5	1	-3.2379
chr6	34309967	34310018	protein_coding	Akr1b8	intron	ENSMUSG00000029762	NonProperStrand	44	chr17	24720654	24720992	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-9.6258
chr13	22098109	22098209	protein_coding-noncoding	Prss16	utr3	ENSMUSG00000006179	NonProperStrand	1	chr13	22097807	22097897	protein_coding	Prss16	intron	ENSMUSG00000006179	NonProperStrand	1	1	-inf
chr13	108146490	108146543	LINE	L1Md_T	L1	chr13L1Md_T108144155	ProperStrand	4	chr16	13900048	13900073	protein_coding	Pdxdc1	intron	ENSMUSG00000022680	ProperStrand	20	1	-20.7310
chr14	32525691	32525714	protein_coding	Ankrd28	intron	ENSMUSG00000014496	NonProperStrand	75	chr5	115489527	115489560	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-8.7077
chr4	151094727	151094834	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr19	8872018	8872048	protein_coding	Polr2g	intron	ENSMUSG00000071662	NonProperStrand	28	1	-10.9125
chr12	110543419	110543518	LINE	Lx	L1	chr12Lx110542426	ProperStrand	5	chr17	39847216	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr9	58643666	58643759	LINE	Lx2	L1	chr9Lx258643545	ProperStrand	3	chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39847659	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	129992418	129992449	protein_coding	Fabp3	exon	ENSMUSG00000028773	NonProperStrand	1	1	-inf
chr17	39843936	39844027	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr3	36566140	36566176	protein_coding	Trpc3	intron	ENSMUSG00000027716	ProperStrand	12	1	-7.1668
chr9	55213350	55213406	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	chr9	118674951	118674991	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.5075
chr17	4082104	4082292	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	5379264	5379347	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	5	-5.8793
chr17	10232007	10232065	LTR	RMER17C	ERVK	chr17RMER17C10231973	NonProperStrand	1	chr15	83149656	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-inf
chr1	131310501	131310552	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-6.0775
chr17	32869087	32869187	LTR	RLTR9A	ERVK	chr17RLTR9A32869037	ProperStrand	1	chr17	32869404	32869494	SINE	B2_Mm1a	B2	chr17B2_Mm1a32869347	NonProperStrand	2	1	-inf
chr17	39846580	39846706	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101161177	101161409	protein_coding	Becn1	intron	ENSMUSG00000035086	ProperStrand	1	1	-inf
chr1	100180179	100180215	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr5	146260994	146261196	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	2	-6.3732
chr2	18390218	18390266	LINE	L1M4	L1	chr2L1M418390215	NonProperStrand	1	chr2	18389320	18389427	LINE	L1_Mus3	L1	chr2L1_Mus318388045	ProperStrand	1	1	-inf
chr17	70963688	70963794	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	32194918	32194947	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	1	-3.6780
chr8	71834686	71834786	LINE	Lx5	L1	chr8Lx571828767	NonProperStrand	3	chr18	62505493	62505535	protein_coding	Htr4	intron	ENSMUSG00000026322	NonProperStrand	28	1	-19.7481
chr17	38793568	38793658	LINE	Lx7	L1	chr17Lx738793068	NonProperStrand	1	chr17	38793838	38793938	LTR	MTC	MaLR	chr17MTC38793831	NonProperStrand	1	1	-inf
chr8	82016073	82016173	LTR	RMER10A	ERVL	chr8RMER10A82016001	ProperStrand	1	chr8	82016456	82016546	SINE	RSINE1	B4	chr8RSINE182016481	NonProperStrand	1	1	-inf
chr2	155328679	155331198	protein_coding	Ggt7	intron	ENSMUSG00000027603	ProperStrand	4	chr2	155297085	155297184	protein_coding	Ncoa6	intron	ENSMUSG00000038369	ProperStrand	13	1	-inf
chr9	52155458	52155486	LINE	L1M2	L1	chr9L1M252155327	ProperStrand	1	chr9	52154398	52154506	LINE	L2a	L2	chr9L2a52154256	NonProperStrand	2	1	-inf
chr17	39846588	39846644	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	109119034	109119107	LTR	ORR1D1	MaLR	chr9ORR1D1109118897	ProperStrand	1	1	-inf
chr1	114007503	114007603	LTR	MYSERV16_I-int	ERVK	chr1MYSERV16_I-int114006014	NonProperStrand	2	chr1	114007686	114007776	LTR	RLTR20B3	ERVK	chr1RLTR20B3114007648	NonProperStrand	1	1	-inf
chr6	139512196	139512296	LINE	L1M3c	L1	chr6L1M3c139512067	NonProperStrand	1	chr6	139512445	139512535	Simple_repeat	(GA)n	Simple_repeat	chr6(GA)n139512345	NonProperStrand	1	1	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	118067477	118067568	protein_coding	Ksr2	intron	ENSMUSG00000061578	NonProperStrand	228	1	-5.2470
chr3	22107501	22107524	protein_coding	Tbl1xr1	intron	ENSMUSG00000027630	ProperStrand	100	chr17	5496999	5497086	protein_coding	Zdhhc14	intron	ENSMUSG00000034265	ProperStrand	114	1	-9.7076
chr3	107293758	107293857	protein_coding-noncoding	Slc6a17	utr3	ENSMUSG00000027894	ProperStrand	3	chr9	123462107	123462152	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr11	117709063	117709137	LTR	RMER4A	ERVK	chr11RMER4A117708931	NonProperStrand	1	chr11	117709368	117709432	LTR	RMER4A	ERVK	chr11RMER4A117709230	NonProperStrand	1	1	-inf
chr17	39847284	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	19514230	19514429	protein_coding	Nova2	intron	ENSMUSG00000030411	ProperStrand	5	1	-4.3348
chr7	107371537	107371617	LINE	L1MB7	L1	chr7L1MB7107371525	ProperStrand	1	chr7	107371487	107371538	SINE	B1F	Alu	chr7B1F107371378	NonProperStrand	1	1	-inf
chr15	99213712	99213812	SINE	B2_Mm2	B2	chr15B2_Mm299213660	ProperStrand	2	chr15	99213506	99213596	SINE	MIR	MIR	chr15MIR99213502	ProperStrand	2	2	-inf
chr7	49798353	49798453	LINE	Lx3C	L1	chr7Lx3C49798160	NonProperStrand	3	chr7	49791984	49798341	SINE	B1_Mus2	Alu	chr7B1_Mus249791984	ProperStrand	2	2	-inf
chr3	86227954	86227995	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	chr11	70969781	70969890	protein_coding	Nlrp1b	intron	ENSMUSG00000070390	ProperStrand	51	1	-10.6777
chr17	74996344	74996434	lincRNA	Gm16978	intron	ENSMUSG00000086865	ProperStrand	1	chr6	124793950	124794050	protein_coding	Leprel2	intron	ENSMUSG00000023191	NonProperStrand	4	1	-inf
chr8	47712183	47712273	protein_coding	Casp3	intron	ENSMUSG00000031628	NonProperStrand	6	chr19	7215365	7215417	protein_coding	Macrod1	intron	ENSMUSG00000036278	NonProperStrand	109	1	-15.6007
chr2	150331946	150332060	LINE	L1Md_T	L1	chr2L1Md_T150329272	ProperStrand	2	chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	1	-20.7183
chr10	115385760	115385860	LTR	MLT1A-int	MaLR	chr10MLT1A-int115385756	NonProperStrand	5	chr10	115385609	115385699	LTR	MTB	MaLR	chr10MTB115385352	ProperStrand	8	4	-21.8124
chr5	141078345	141078435	SINE	B4	B4	chr5B4141078252	NonProperStrand	1	chr5	141078496	141078596	SINE	PB1D10	Alu	chr5PB1D10141078518	NonProperStrand	1	1	-inf
chr9	37511084	37511117	LINE	L1_Mus4	L1	chr9L1_Mus437510953	ProperStrand	2	chr9	37497351	37497441	Simple_repeat	(TA)n	Simple_repeat	chr9(TA)n37497356	ProperStrand	3	1	-20.8297
chr11	52119244	52120936	SINE	B2_Mm2	B2	chr11B2_Mm252119112	NonProperStrand	1	chr15	80080426	80080500	protein_coding	Smcr7l	exon	ENSMUSG00000022412	NonProperStrand	429	1	-inf
chr14	58861504	58861594	LTR	ORR1C2-int	MaLR	chr14ORR1C2-int58860436	ProperStrand	1	chr14	58861824	58861924	LTR	ORR1C2	MaLR	chr14ORR1C258861748	ProperStrand	1	1	-inf
chr16	17283452	17283552	protein_coding-noncoding	Pi4ka	utr3	ENSMUSG00000041720	NonProperStrand	1	chr16	17283285	17283375	protein_coding	Pi4ka	intron	ENSMUSG00000041720	NonProperStrand	6	1	-inf
chr18	7926993	7927027	protein_coding	Wac	utr3	ENSMUSG00000024283	ProperStrand	36	chr2	92006716	92006760	protein_coding	Phf21a	intron	ENSMUSG00000058318	NonProperStrand	121	1	-11.6453
chr12	108209100	108209126	LTR	MT2A	ERVL	chr12MT2A108209001	ProperStrand	1	chr15	12500022	12500101	protein_coding	Pdzd2	intron	ENSMUSG00000022197	ProperStrand	76	1	-inf
chr5	142664399	142664484	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	chr17	84969523	84969595	protein_coding	Plekhh2	intron	ENSMUSG00000040852	ProperStrand	89	1	-7.9717
chr9	23277136	23277226	protein_coding	Bmper	intron	ENSMUSG00000031963	ProperStrand	13	chr9	22630090	22630190	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	1	-13.5276
chr8	116569804	116569904	SINE	B3A	B2	chr8B3A116569735	NonProperStrand	4	chr8	116569901	116569991	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n116569886	NonProperStrand	4	4	-inf
chr5	33514263	33514363	DNA	MER3	MER1_type	chr5MER333514261	NonProperStrand	1	chr5	33514350	33514440	SINE	B1_Mur1	Alu	chr5B1_Mur133514349	ProperStrand	3	1	-inf
chr17	29165279	29165379	SINE	B1_Mus1	Alu	chr17B1_Mus129165279	NonProperStrand	1	chr17	29165420	29165510	SINE	B3A	B2	chr17B3A29165413	ProperStrand	1	1	-inf
chr9	115229935	115229980	LTR	ORR1E	MaLR	chr9ORR1E115229935	ProperStrand	1	chr11	22828777	22828850	protein_coding	Commd1	intron	ENSMUSG00000051355	ProperStrand	127	1	-inf
chr17	39846396	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	95571867	95571887	protein_coding	Ces1a	intron	ENSMUSG00000071047	NonProperStrand	4	1	-3.6552
chr7	68224504	68224604	LINE	L1_Mus2	L1	chr7L1_Mus268224512	NonProperStrand	2	chr7	68224396	68224486	Simple_repeat	(TTC)n	Simple_repeat	chr7(TTC)n68224356	ProperStrand	2	2	-inf
chr12	43950593	43950683	LTR	LTR16A	ERVL	chr12LTR16A43950552	ProperStrand	1	chr12	43950458	43950558	LTR	RLTR28	ERVL	chr12RLTR2843950198	ProperStrand	1	1	-inf
chr9	120130229	120130319	LTR	MTD	MaLR	chr9MTD120129944	NonProperStrand	34	chr9	120130306	120130810	SINE	B4	B4	chr9B4120130322	NonProperStrand	37	1	-14.1486
chr7	136980592	136980692	LINE	L1MA7	L1	chr7L1MA7136980582	ProperStrand	2	chr7	136980492	136980582	SINE	B3	B2	chr7B3136980444	ProperStrand	2	2	-inf
chr1	168412982	168413044	LINE	Lx4A	L1	chr1Lx4A168412640	NonProperStrand	2	chr5	124889950	124890037	protein_coding	Setd8	utr5	ENSMUSG00000049327	ProperStrand	6	1	-inf
chr9	31070761	31070788	LTR	RMER15	ERVL	chr9RMER1531070491	ProperStrand	2	chr1	127491434	127491451	protein_coding	Slc35f5	intron	ENSMUSG00000026342	NonProperStrand	3	2	-inf
chr12	69857571	69857612	LINE	L1Md_F2	L1	chr12L1Md_F269856455	ProperStrand	1	chr17	39846747	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	145828160	145831271	LTR	RLTR6-int	ERV1	chr4RLTR6-int145825958	ProperStrand	6	chr4	146465950	146469478	lincRNA	Gm16889	intron	ENSMUSG00000084976	NonProperStrand	52	2	-inf
chr15	7193938	7194032	protein_coding	Egflam	intron	ENSMUSG00000042961	NonProperStrand	61	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.0902
chr17	39845847	39845895	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	NonProperStrand	5	chr16	23110857	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	NonProperStrand	1	1	-inf
chr12	111789414	111789465	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	ProperStrand	236	chr4	147494758	147494838	protein_coding	2610109H07Rik	intron	ENSMUSG00000029005	NonProperStrand	12	1	-12.5599
chr17	71650461	71650503	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	chrX	162811310	162811548	protein_coding	Gpm6b	intron	ENSMUSG00000031342	NonProperStrand	61	1	-10.3317
chr19	46792421	46792448	protein_coding	As3mt	intron	ENSMUSG00000003559	ProperStrand	85	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-5.8844
chr14	41272797	41272897	LINE	L1_Mus4	L1	chr14L1_Mus441271523	NonProperStrand	1	chr14	41271319	41271409	LTR	RLTR20B1	ERVK	chr14RLTR20B141271345	NonProperStrand	1	1	-inf
chr19	4811273	4811373	protein_coding	Rbm14	exon	ENSMUSG00000006456	ProperStrand	194	chr7	127465720	127465810	protein_coding	Abca14	intron	ENSMUSG00000062017	ProperStrand	33	1	-10.8754
chr14	75972528	75972586	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	2	chr17	39846931	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr13	81823987	81824006	protein_coding	Polr3g	intron	ENSMUSG00000035834	ProperStrand	3	chr13	44869574	44869644	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr17	39847509	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	6525698	6525719	protein_coding	Tbrg4	intron	ENSMUSG00000000384	NonProperStrand	1	1	-inf
chr13	109643461	109643540	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr15	34440790	34440845	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	1	-9.0059
chrX	151909433	151909544	LINE	Lx6	L1	chrXLx6151909229	ProperStrand	15	chr9	123461889	123461906	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr2	177830325	177830384	LTR	RLTR20A	ERVK	chr2RLTR20A177829941	ProperStrand	2	chr15	72994538	72994606	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	9	1	-inf
chr13	60934438	60934501	LINE	L1_Mur3	L1	chr13L1_Mur360934000	ProperStrand	7	chr10	12377370	12377423	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	1	-14.6140
chr3	62996949	62997049	LTR	MTB-int	MaLR	chr3MTB-int62996897	NonProperStrand	1	chr3	62996826	62996916	LTR	MTB	MaLR	chr3MTB62996526	NonProperStrand	1	1	-inf
chr2	31495230	31495330	antisense	Gm13425	.	ENSMUSG00000085224	NonProperStrand	14	chr5	115560825	115560915	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	165	1	-12.9551
chr2	173036156	173036256	protein_coding-noncoding	Zbp1	utr3	ENSMUSG00000027514	NonProperStrand	2	chr2	173036065	173036155	protein_coding	Zbp1	exon	ENSMUSG00000027514	NonProperStrand	25	2	-inf
chr3	138874903	138874964	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	61	chr8	123921484	123921566	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-6.1802
chr11	60909071	60909175	LINE	Lx8	L1	chr11Lx860909098	NonProperStrand	1	chr11	60908817	60908851	LTR	RMER6C	ERVK	chr11RMER6C60908790	ProperStrand	1	1	-inf
chr17	35506161	35506248	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	chr6	27269104	27269123	protein_coding	Grm8	intron	ENSMUSG00000024211	NonProperStrand	26	1	-12.2898
chr1	122357185	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr1	134100028	134100075	protein_coding	Lemd1	intron	ENSMUSG00000079330	ProperStrand	7	1	-13.3334
chr18	12714840	12714856	protein_coding	Lama3	intron	ENSMUSG00000024421	ProperStrand	20	chr9	20926847	20927131	protein_coding	Tyk2	intron	ENSMUSG00000032175	ProperStrand	108	1	-13.0704
chr9	55213995	55214918	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	chr9	56343798	56343927	protein_coding	Hmg20a	utr3	ENSMUSG00000032329	NonProperStrand	29	1	-13.0172
chr18	75073372	75073462	LINE	L1MB4	L1	chr18L1MB475073151	NonProperStrand	2	chr17	39847362	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr11	19946589	19946680	SINE	B1_Mus2	Alu	chr11B1_Mus219946534	ProperStrand	9	chr11	19946766	19946866	SINE	ID_B1	B4	chr11ID_B119946778	ProperStrand	12	7	-inf
chr10	59609035	59609105	LINE	Lx5	L1	chr10Lx559608968	ProperStrand	1	chr17	39847690	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846584	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	21678949	21678967	protein_coding	Ccnc	intron	ENSMUSG00000028252	NonProperStrand	6	2	-5.1926
chr6	72314128	72314228	LTR	MTD-int	MaLR	chr6MTD-int72314079	NonProperStrand	1	chr6	72314227	72314317	SINE	B2_Mm2	B2	chr6B2_Mm272314177	ProperStrand	1	1	-inf
chrX	10194967	10195993	LINE	Lx8	L1	chrXLx810195470	NonProperStrand	1	chr14	122895245	122895293	LTR	RMER15-int	ERVL	chr14RMER15-int122895040	ProperStrand	1	1	-inf
chr13	51111265	51111396	LTR	ORR1A2	MaLR	chr13ORR1A251111284	NonProperStrand	3	chr13	51111156	51111291	SINE	B2_Mm2	B2	chr13B2_Mm251111108	NonProperStrand	3	3	-inf
chr14	33968010	33968100	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	chr12	88911588	88911688	protein_coding	Gm2022	intron	ENSMUSG00000071217	NonProperStrand	3	1	-17.1305
chr1	179300969	179301033	LTR	MTA_Mm	MaLR	chr1MTA_Mm179300943	NonProperStrand	1	chr1	179300675	179300764	LTR	MTEb	MaLR	chr1MTEb179300581	NonProperStrand	3	1	-inf
chr11	109011820	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	19781301	19789730	LINE	L1Md_F2	L1	chr14L1Md_F219780606	ProperStrand	12	1	-9.3520
chr9	76522684	76522784	LTR	RLTR10-int	ERVK	chr9RLTR10-int76520828	ProperStrand	1	chr9	76522778	76522868	LTR	RLTR10	ERVK	chr9RLTR1076522782	ProperStrand	1	1	-inf
chr15	93403837	93403963	protein_coding	Prickle1	intron	ENSMUSG00000036158	NonProperStrand	23	chr9	37524088	37524105	protein_coding	Olfr151	intron	ENSMUSG00000061165	ProperStrand	5	1	-19.0181
chr17	10260510	10260600	LTR	MTE2b	MaLR	chr17MTE2b10260285	ProperStrand	1	chr17	10260729	10260829	SINE	MIR	MIR	chr17MIR10260751	NonProperStrand	1	1	-inf
chr13	77058520	77058573	protein_coding	Mctp1	intron	ENSMUSG00000021596	NonProperStrand	18	chr8	84888373	84888464	protein_coding	Il15	intron	ENSMUSG00000031712	NonProperStrand	64	1	-14.3370
chr12	85337890	85337938	LINE	L1MA6	L1	chr12L1MA685337897	NonProperStrand	1	chr12	85338081	85338149	SINE	B1_Mur3	Alu	chr12B1_Mur385338054	NonProperStrand	1	1	-inf
chr7	24198104	24198150	protein_coding	Nlrp5	intron	ENSMUSG00000015721	NonProperStrand	13	chr1	53249029	53249106	protein_coding	Pms1	exon	ENSMUSG00000026098	ProperStrand	45	1	-15.7368
chr17	39847692	39847723	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	6084789	6084809	protein_coding	Gtf2h5	utr3	ENSMUSG00000034345	ProperStrand	5	1	-3.2379
chr18	14428238	14428339	LTR	RMER5	ERV1	chr18RMER514428238	NonProperStrand	1	chr18	14428118	14428208	Simple_repeat	(GGAA)n	Simple_repeat	chr18(GGAA)n14428129	ProperStrand	1	1	-inf
chr3	79545911	79545993	LTR	ORR1E	MaLR	chr3ORR1E79545917	NonProperStrand	2	chr9	123461932	123461974	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr6	48887327	48887427	LTR	RLTR22_Mur	ERVK	chr6RLTR22_Mur48887267	NonProperStrand	1	chr6	48887583	48887673	Other	RMER1B	Other	chr6RMER1B48887519	NonProperStrand	1	1	-inf
chr10	8161469	8161494	protein_coding	Ust	intron	ENSMUSG00000047712	ProperStrand	54	chrX	85162539	85162574	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	NonProperStrand	79	1	-11.6816
chr1	44167730	44167878	protein_coding	Kdelc1	intron	ENSMUSG00000026047	NonProperStrand	6	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	3	-inf
chr6	97977220	97977263	Simple_repeat	(CAGAGA)n	Simple_repeat	chr6(CAGAGA)n97977220	ProperStrand	1	chr9	123461820	123461902	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	129158069	129158169	LTR	MTC-int	MaLR	chr10MTC-int129158098	ProperStrand	1	chr10	129157707	129157797	LTR	MTC	MaLR	chr10MTC129157729	ProperStrand	1	1	-inf
chr4	149642192	149642269	SINE	B1_Mus1	Alu	chr4B1_Mus1149642197	ProperStrand	1	chr4	149642066	149642133	SINE	ID_B1	B4	chr4ID_B1149642064	ProperStrand	3	1	-inf
chr17	39848264	39848334	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	100260822	100260901	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n100260843	NonProperStrand	1	1	-inf
chr17	39845348	39845487	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr1	152395187	152395204	SINE	ID_B1	B4	chr1ID_B1152395124	ProperStrand	2	2	-inf
chr19	8708563	8708660	LTR	RLTR10B2	ERVK	chr19RLTR10B28708558	ProperStrand	1	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr3	103030253	103030347	LINE	L1Md_F3	L1	chr3L1Md_F3103030017	ProperStrand	1	chr6	3201509	3201566	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr10	69457746	69457781	protein_coding	Ank3	intron	ENSMUSG00000069601	ProperStrand	58	chr14	7931073	7933755	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-9.6271
chr6	71979084	71979167	LINE	L1_Mus1	L1	chr6L1_Mus171979015	NonProperStrand	6	chr2	5379272	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr18	53344312	53344366	protein_coding	Snx2	intron	ENSMUSG00000034484	ProperStrand	26	chr12	80680247	80680352	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-11.5323
chr2	102638913	102638932	SINE	B1_Mur1	Alu	chr2B1_Mur1102638880	ProperStrand	1	chr9	123461891	123461910	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	154475727	154475817	protein_coding	Morn1	intron	ENSMUSG00000029049	NonProperStrand	21	chr4	154386797	154386897	protein_coding	Plch2	intron	ENSMUSG00000029055	ProperStrand	10	1	-17.7681
chr11	93946140	93946220	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	chr8	85489985	85490019	protein_coding	Rnf150	intron	ENSMUSG00000047747	NonProperStrand	43	1	-12.1164
chrX	103485475	103485521	LINE	L1_Mus1	L1	chrXL1_Mus1103480452	NonProperStrand	6	chrX	103449672	103449728	protein_coding	Fnd3c2	intron	ENSMUSG00000073012	NonProperStrand	28	1	-18.5473
chr2	120535903	120535922	protein_coding	Stard9	intron	ENSMUSG00000033705	NonProperStrand	75	chr13	97190551	97190612	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6914
chr13	97981918	97981990	DNA	MER44A	MER2_type	chr13MER44A97981910	ProperStrand	1	chr13	112578182	112578256	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr3	90502224	90502275	SINE	PB1D9	Alu	chr3PB1D990502222	ProperStrand	1	chr3	90502163	90502204	Simple_repeat	(TTTTC)n	Simple_repeat	chr3(TTTTC)n90502126	NonProperStrand	2	1	-inf
chr10	80134000	80134059	protein_coding	Mknk2	intron	ENSMUSG00000020190	ProperStrand	29	chr4	116610884	116610953	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-11.7071
chr17	39847247	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	126566192	126566352	Low_complexity	CT-rich	Low_complexity	chr7CT-rich126566158	NonProperStrand	1	1	-inf
chr11	76535812	76535881	LTR	RMER15	ERVL	chr11RMER1576535790	NonProperStrand	1	chr7	24885204	24885504	protein_coding	Zfp180	intron	ENSMUSG00000057101	ProperStrand	154	1	-inf
chr4	106334441	106334541	LTR	ORR1A2	MaLR	chr4ORR1A2106334355	NonProperStrand	2	chr4	106334271	106334361	LTR	ORR1D1	MaLR	chr4ORR1D1106334237	ProperStrand	1	1	-inf
chr2	89074293	89074383	LINE	L1_Mur3	L1	chr2L1_Mur389074313	ProperStrand	1	chr2	89074186	89074286	LTR	RLTR15	ERVK	chr2RLTR1589073956	ProperStrand	1	1	-inf
chr14	86836638	86836691	LINE	Lx9	L1	chr14Lx986836400	NonProperStrand	2	chr14	86837290	86837353	LTR	MLT1B	MaLR	chr14MLT1B86837256	ProperStrand	1	1	-inf
chr13	106381784	106381819	LINE	L1VL1	L1	chr13L1VL1106378093	ProperStrand	2	chr2	131512185	131516261	antisense	Gm14280	.	ENSMUSG00000086831	NonProperStrand	33	1	-20.7426
chr17	39847174	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	27055315	27055392	protein_coding	Hgsnat	utr3	ENSMUSG00000037260	NonProperStrand	2	1	-6.5615
chr2	94062996	94063071	Low_complexity	CT-rich	Low_complexity	chr2CT-rich94063015	NonProperStrand	1	chr10	81182213	81182295	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	1	-inf
chr7	143287603	143287667	LTR	ORR1E	MaLR	chr7ORR1E143287366	ProperStrand	11	chr9	123461886	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr11	119760756	119760856	protein_coding-noncoding	Rptor	utr3	ENSMUSG00000025583	ProperStrand	2	chr11	119760634	119760724	protein_coding	Rptor	utr3	ENSMUSG00000025583	ProperStrand	231	2	-inf
chr11	109011753	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	10045172	10047427	protein_coding	Cspp1	intron	ENSMUSG00000056763	ProperStrand	46	1	-6.6255
chr2	50296327	50296432	LTR	MLT1B	MaLR	chr2MLT1B50296329	ProperStrand	7	chr2	50296433	50296533	SINE	B1_Mur1	Alu	chr2B1_Mur150296434	ProperStrand	6	6	-inf
chr19	47668652	47668909	protein_coding	Slk	intron	ENSMUSG00000025060	NonProperStrand	4	chr9	28675363	28813299	protein_coding	Ntm	intron	ENSMUSG00000059974	ProperStrand	39	1	-18.7700
chr19	32513437	32513502	LTR	RLTR10C	ERVK	chr19RLTR10C32513220	NonProperStrand	1	chr13	48912890	48912965	protein_coding	Phf2	exon	ENSMUSG00000038025	ProperStrand	92	1	-inf
chr17	39846353	39846376	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	24830865	24830881	SINE	ID_B1	B4	chr10ID_B124830709	ProperStrand	1	1	-inf
chr17	35835434	35835578	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr13	97190541	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-4.5801
chr10	70125808	70125868	LINE	L1Md_F2	L1	chr10L1Md_F270125179	ProperStrand	6	chr13	44869928	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.1685
chr6	128371987	128372049	protein_coding	Itfg2	intron	ENSMUSG00000001518	NonProperStrand	25	chr11	87426782	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-13.6025
chr9	54423312	54426439	LTR	RLTR25B	ERVK	chr9RLTR25B54425545	ProperStrand	1	chr9	54461003	54461051	protein_coding	Acsbg1	intron	ENSMUSG00000032281	ProperStrand	10	1	-inf
chr5	127688223	127688291	LINE	L1Md_F2	L1	chr5L1Md_F2127687866	ProperStrand	2	chr9	110621181	110621197	SINE	B2_Mm2	B2	chr9B2_Mm2110621170	ProperStrand	1	1	-inf
chr7	5069465	5070396	SINE	ID_B1	B4	chr7ID_B15069454	ProperStrand	3	chr9	123461905	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-12.1476
chr17	35384444	35384544	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	chr15	31504384	31504474	protein_coding	Cmbl	intron	ENSMUSG00000022235	ProperStrand	1	1	-inf
chr17	39846011	39846111	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	106958665	106958755	protein_coding	Dync1li2	intron	ENSMUSG00000035770	NonProperStrand	28	1	-3.3111
chr7	65531304	65531394	LINE	L1Md_A	L1	chr7L1Md_A65531118	ProperStrand	1	chr7	65531014	65531114	LINE	Lx	L1	chr7Lx65526349	ProperStrand	1	1	-inf
chr11	74946103	74946193	protein_coding-noncoding	Smg6	utr5	ENSMUSG00000038290	ProperStrand	3	chr11	74946188	74946288	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-16.4573
chr13	104824550	104824650	protein_coding	Nln	intron	ENSMUSG00000021710	NonProperStrand	18	chr17	86970876	86970966	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	1	-12.6279
chr11	75634829	75634878	antisense	Gm12339	.	ENSMUSG00000087059	ProperStrand	13	chr11	69669631	69669732	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-12.1310
chr10	121744199	121744266	LTR	IAPEz-int	ERVK	chr10IAPEz-int121744113	NonProperStrand	2	chr2	79292499	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-19.1379
chrX	140789703	140789803	protein_coding	Alg13	intron	ENSMUSG00000041718	ProperStrand	2	chrX	141169123	141169213	protein_coding	Zcchc16	intron	ENSMUSG00000071679	ProperStrand	11	1	-21.2279
chr4	117089540	117089643	protein_coding	Rnf220	intron	ENSMUSG00000028677	NonProperStrand	93	chr13	97190570	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.2811
chr16	10421271	10421601	protein_coding-noncoding	Nubp1	utr5	ENSMUSG00000022503	ProperStrand	2	chr3	27473871	27473928	protein_coding	Fndc3b	intron	ENSMUSG00000039286	ProperStrand	140	1	-17.7990
chr11	17946277	17946377	LINE	L1Md_T	L1	chr11L1Md_T17946018	ProperStrand	6	chr11	12357918	12358008	protein_coding	Cobl	intron	ENSMUSG00000020173	NonProperStrand	7	1	-23.4069
chr9	62917285	62917385	SINE	B3	B2	chr9B362917314	NonProperStrand	1	chr9	62917640	62917730	SINE	PB1D10	Alu	chr9PB1D1062917666	ProperStrand	1	1	-inf
chr8	70307164	70307218	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	chr1	128239406	128239450	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	1	-6.1182
chr3	87887067	87887167	protein_coding	Iqgap3	intron	ENSMUSG00000028068	NonProperStrand	2	chr9	65829768	65829858	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	ProperStrand	13	1	-inf
chr5	147860686	147862623	protein_coding	Lnx2	intron	ENSMUSG00000016520	NonProperStrand	26	chr9	72697573	72697639	protein_coding	Prtg	exon	ENSMUSG00000036030	ProperStrand	323	1	-10.3402
chr13	109791877	109791927	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr19	47832624	47832660	protein_coding	Wdr96	intron	ENSMUSG00000044948	ProperStrand	15	1	-10.7915
chr2	26007804	26007894	Other	RMER1C	Other	chr2RMER1C26007786	ProperStrand	4	chr2	26006602	26007807	SINE	B1_Mus1	Alu	chr2B1_Mus126007639	ProperStrand	5	1	-inf
chr2	173782929	173783029	Simple_repeat	(TCTA)n	Simple_repeat	chr2(TCTA)n173782889	ProperStrand	1	chr13	109723651	109723741	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-inf
chrX	77636419	77636522	LINE	Lx	L1	chrXLx77636421	ProperStrand	3	chr17	39847734	39847757	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr14	47277177	47289572	LTR	ORR1E	MaLR	chr14ORR1E47289477	NonProperStrand	4	chr14	47277082	47277172	Simple_repeat	(CAGAGA)n	Simple_repeat	chr14(CAGAGA)n47277108	ProperStrand	3	3	-inf
chr17	39847183	39847295	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	21248301	21252167	protein_coding	Ugp2	intron	ENSMUSG00000001891	NonProperStrand	19	4	-7.4855
chr9	114772511	114772611	Low_complexity	CT-rich	Low_complexity	chr9CT-rich114772479	NonProperStrand	2	chr9	114772657	114772747	Simple_repeat	(TTTC)n	Simple_repeat	chr9(TTTC)n114772587	NonProperStrand	2	2	-inf
chr8	72475176	72475197	protein_coding	Gatad2a	intron	ENSMUSG00000036180	NonProperStrand	41	chr2	5379307	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.2854
chr11	109011820	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr19	10896212	10896232	protein_coding	Cd6	intron	ENSMUSG00000024670	ProperStrand	7	1	-10.4933
chr12	16636789	16636879	LINE	L1M1	L1	chr12L1M116636801	ProperStrand	1	chr12	16636515	16636615	LINE	Lx7	L1	chr12Lx716636522	ProperStrand	1	1	-inf
chr18	55405390	55405408	LINE	L1Md_F2	L1	chr18L1Md_F255405344	NonProperStrand	2	chr17	39846456	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr7	67239700	67239800	protein_coding	Snrpn	intron	ENSMUSG00000000948	ProperStrand	10	chr17	80641777	80641867	protein_coding	Dhx57	intron	ENSMUSG00000035051	ProperStrand	50	2	-20.7610
chr7	100341474	100341600	LINE	L1Md_T	L1	chr7L1Md_T100337156	ProperStrand	2	chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	86516106	86516187	protein_coding	Cltc	exon	ENSMUSG00000047126	ProperStrand	35	chr10	61419312	61419383	protein_coding	Col13a1	intron	ENSMUSG00000058806	NonProperStrand	58	1	-13.1809
chr2	30316500	30317184	LINE	Lx7	L1	chr2Lx730316039	NonProperStrand	2	chr2	30312671	30316523	SINE	B2_Mm1a	B2	chr2B2_Mm1a30315060	ProperStrand	2	2	-inf
chr2	156311869	156311928	protein_coding	Epb4.1l1	intron	ENSMUSG00000027624	NonProperStrand	4	chr13	97190562	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr2	71420620	71420705	LINE	L1MC4a	L1	chr2L1MC4a71420422	NonProperStrand	1	chr17	39846818	39846868	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr18	77042496	77042587	LINE	Lx6	L1	chr18Lx677041313	ProperStrand	1	chr10	20323340	20323356	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	1	-inf
chr7	141448752	141451043	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	188	chr2	32877521	32877598	protein_coding-noncoding	Garnl3	utr3	ENSMUSG00000038860	NonProperStrand	11	1	-13.1978
chr11	58067784	58067886	LINE	L1MA5A	L1	chr11L1MA5A58067684	ProperStrand	2	chr11	58067929	58068019	SINE	PB1D9	Alu	chr11PB1D958067892	ProperStrand	2	2	-inf
chr14	84672241	84672341	LINE	L1Md_F2	L1	chr14L1Md_F284671811	NonProperStrand	1	chr14	84672432	84672522	LINE	L1Md_F2	L1	chr14L1Md_F284672261	NonProperStrand	1	1	-inf
chr11	120146526	120146550	protein_coding	Bahcc1	exon	ENSMUSG00000039741	NonProperStrand	136	chr14	56750028	56750052	protein_coding	Gzmd	intron	ENSMUSG00000059256	ProperStrand	1	1	-inf
chr4	141563212	141563321	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	chr17	28969963	28970006	protein_coding	Brpf3	intron	ENSMUSG00000063952	NonProperStrand	24	1	-12.9335
chr6	5833095	5833112	protein_coding	Dync1i1	intron	ENSMUSG00000029757	NonProperStrand	9	chr3	108109832	108109915	protein_coding	Sort1	intron	ENSMUSG00000068747	NonProperStrand	31	1	-17.2579
chr1	149653425	149653442	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int149652500	ProperStrand	16	chr11	120290922	120291059	protein_coding	Nploc4	intron	ENSMUSG00000039703	NonProperStrand	167	1	-12.6551
chr9	19657637	19657760	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chr14	33967403	33967780	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	2	-inf
chr7	137034557	137034654	LINE	L1_Rod	L1	chr7L1_Rod137034385	ProperStrand	2	chr7	137034733	137034756	SINE	B1_Mm	Alu	chr7B1_Mm137034728	ProperStrand	1	1	-inf
chr12	24892579	24892663	LTR	IAPLTR4	ERVK	chr12IAPLTR424892421	ProperStrand	2	chr12	24891317	24891356	LTR	MMERVK10C-int	ERVK	chr12MMERVK10C-int24891103	ProperStrand	1	1	-inf
chr2	22744824	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	123461802	123462183	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	52	-21.2873
chr17	91719692	91719782	LINE	L1VL2	L1	chr17L1VL291718801	ProperStrand	1	chr17	91720061	91720161	LINE	L1_Mm	L1	chr17L1_Mm91720051	ProperStrand	1	1	-inf
chr9	121317161	121317304	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	242	chr7	31208886	31208903	protein_coding	Nfkbid	intron	ENSMUSG00000036931	NonProperStrand	1	1	-inf
chr2	22744877	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	97628894	97629030	SINE	B1_Mus2	Alu	chr11B1_Mus297628883	ProperStrand	5	1	-11.9551
chr11	109011824	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	108092094	108092200	protein_coding	Bsn	intron	ENSMUSG00000032589	ProperStrand	35	1	-7.1707
chr2	29662601	29662701	protein_coding-noncoding	Slc27a4	utr5	ENSMUSG00000059316	ProperStrand	1	chr2	29662448	29662538	protein_coding	Slc27a4	intron	ENSMUSG00000059316	ProperStrand	43	1	-inf
chr19	7495242	7495264	protein_coding	2700081O15Rik	intron	ENSMUSG00000053080	ProperStrand	8	chr8	60912316	60912400	protein_coding	Galntl6	intron	ENSMUSG00000061864	ProperStrand	140	1	-14.4642
chr7	127980142	127980169	SINE	ID_B1	B4	chr7ID_B1127980129	ProperStrand	9	chr6	4990090	4990107	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-12.9874
chr8	80834571	80834680	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr19	28997203	28997227	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	59	1	-7.3195
chr2	59823025	59823125	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	chr16	35928018	35928108	protein_coding	Dtx3l	utr3	ENSMUSG00000049502	NonProperStrand	5	1	-15.2788
chr17	39846401	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	138237727	138237787	LTR	MTD	MaLR	chr4MTD138237668	ProperStrand	1	1	-inf
chr12	20296957	20297057	SINE	B3	B2	chr12B320296975	ProperStrand	1	chr12	20297134	20297224	Simple_repeat	(TTTTC)n	Simple_repeat	chr12(TTTTC)n20297156	NonProperStrand	1	1	-inf
chr2	32353201	32353233	LINE	L1MC	L1	chr2L1MC32353099	NonProperStrand	1	mmu-miR-6240	1	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	1	-inf
chr8	114752494	114752579	SINE	B3A	B2	chr8B3A114752433	ProperStrand	2	chr5	121208405	121208456	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-17.3408
chr17	83744331	83744384	LINE	L1Md_F3	L1	chr17L1Md_F383744316	NonProperStrand	2	chr1	185381885	185381968	LTR	ORR1E	MaLR	chr1ORR1E185381905	NonProperStrand	1	1	-inf
chr12	79250021	79250103	LINE	Lx	L1	chr12Lx79248617	ProperStrand	1	chr9	123462015	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	71468895	71468972	protein_coding	Myom1	intron	ENSMUSG00000024049	NonProperStrand	61	chr10	42182633	42182699	protein_coding	Lace1	intron	ENSMUSG00000038302	ProperStrand	56	1	-12.1284
chr17	39847844	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	49263375	49263468	LTR	RMER16-int	ERVK	chr6RMER16-int49263359	NonProperStrand	1	1	-inf
chr4	9659090	9659183	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int9656678	NonProperStrand	7	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-14.3728
chr18	17433340	17433400	LINE	L1Md_F3	L1	chr18L1Md_F317432695	NonProperStrand	1	chr17	39847778	39847858	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	102829374	102829445	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr12	109650484	109650565	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-5.6772
chr4	73244082	73244172	LINE	L1VL4	L1	chr4L1VL473244030	ProperStrand	1	chr4	73243581	73243681	LINE	L1_Mus1	L1	chr4L1_Mus173243576	NonProperStrand	1	1	-inf
chr10	111492092	111492847	LTR	IAPEz-int	ERVK	chr10IAPEz-int111491982	ProperStrand	1	chr11	75675097	75675138	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	1	-inf
chr13	49755147	49755237	protein_coding	Nol8	intron	ENSMUSG00000021392	ProperStrand	1	chr6	88393074	88393174	protein_coding	Eefsec	intron	ENSMUSG00000033216	NonProperStrand	8	1	-inf
chr6	33779262	33779368	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr6	92818712	92818735	protein_coding	Adamts9	intron	ENSMUSG00000030022	NonProperStrand	6	1	-11.5555
chr12	109646907	109646943	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	chr17	47751099	47751197	protein_coding	Med20	intron	ENSMUSG00000092558	ProperStrand	41	1	-8.5553
chrX	101096488	101096578	LTR	MuRRS-int	ERV1	chrXMuRRS-int101096496	NonProperStrand	1	chrX	101096392	101096492	LTR	ORR1A2	MaLR	chrXORR1A2101096175	NonProperStrand	1	1	-inf
chr2	33291722	33291793	LINE	L2c	L2	chr2L2c33291712	ProperStrand	1	chr2	33294680	33294750	SINE	B1_Mus1	Alu	chr2B1_Mus133294595	NonProperStrand	1	1	-inf
chr4	53860729	53860774	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr5	129607815	129607919	protein_coding	Gpr133	intron	ENSMUSG00000044017	ProperStrand	9	1	-13.3153
chr16	52589734	52589752	LINE	Lx8	L1	chr16Lx852589623	NonProperStrand	1	chr17	39847646	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	12451209	12451273	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.3919
chr8	114521779	114533662	protein_coding	Kars	intron	ENSMUSG00000031948	NonProperStrand	70	chr8	114500963	114509349	protein_coding	Adat1	intron	ENSMUSG00000031949	NonProperStrand	66	2	-18.0749
chr17	39847624	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	69062304	69062334	SINE	B1_Mur2	Alu	chr11B1_Mur269062232	ProperStrand	1	1	-inf
chr12	84176043	84176083	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	chr16	34128740	34128841	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-6.5456
chr17	39846759	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	48282345	48282363	protein_coding	Frmd7	intron	ENSMUSG00000036131	ProperStrand	3	1	-4.3017
chr7	29178930	29179016	protein_coding-noncoding	Paf1	utr5	ENSMUSG00000003437	NonProperStrand	2	chr7	29177164	29178922	protein_coding	Med29	intron	ENSMUSG00000003444	ProperStrand	8	2	-inf
chr3	78121085	78121175	LINE	L1Md_F2	L1	chr3L1Md_F278120266	ProperStrand	1	chr3	78121199	78121299	LINE	L1Md_F2	L1	chr3L1Md_F278121091	ProperStrand	1	1	-inf
chr15	97053602	97053663	DNA	URR1B	MER1_type	chr15URR1B97053619	ProperStrand	1	chr15	97055583	97055634	LTR	MTD	MaLR	chr15MTD97055419	NonProperStrand	4	1	-inf
chr17	39847288	39847308	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	101253752	101253782	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n101253713	ProperStrand	1	1	-inf
chr12	10926761	10926861	LINE	L1Md_T	L1	chr12L1Md_T10925095	ProperStrand	1	chr8	13417126	13417216	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	1	-inf
chr17	53557234	53557324	protein_coding	Efhb	intron	ENSMUSG00000023931	ProperStrand	6	chr14	33968092	33968192	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-16.3381
chr17	39847702	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	108253040	108253057	protein_coding	Usp4	intron	ENSMUSG00000032612	ProperStrand	3	1	-4.3512
chr17	39847658	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	52376416	52376452	SINE	ID_B1	B4	chr11ID_B152376268	NonProperStrand	1	1	-inf
chr18	5024156	5024200	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr2	156103424	156111880	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	96	1	-8.1368
chr5	70962728	70962818	DNA	Tigger7	MER2_type	chr5Tigger770962549	NonProperStrand	1	chr5	70962416	70962516	LTR	MTC	MaLR	chr5MTC70962129	ProperStrand	1	1	-inf
chr17	39846759	39846782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	34224166	34224294	LTR	MTE2b	MaLR	chr18MTE2b34224063	ProperStrand	2	1	-5.3533
chr17	70963684	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr1	136906465	136906555	protein_coding	Lgr6	intron	ENSMUSG00000042793	ProperStrand	106	1	-5.0951
chr17	39843729	39843750	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	10587644	10587748	LTR	MLT1B	MaLR	chr2MLT1B10587521	NonProperStrand	1	1	-inf
chr2	5379273	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr17	7952335	7952409	protein_coding	Fndc1	intron	ENSMUSG00000071984	ProperStrand	2	1	-11.9279
chr6	122737245	122737288	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr4	133900300	133900400	protein_coding	Slc30a2	intron	ENSMUSG00000028836	ProperStrand	2	1	-16.4883
chr6	112935552	112935625	DNA	MER5A	MER1_type	chr6MER5A112935459	ProperStrand	1	chr5	137954582	137954621	protein_coding	Epo	intron	ENSMUSG00000029711	NonProperStrand	1	1	-inf
chr12	15496732	15496832	LINE	L1MA4A	L1	chr12L1MA4A15496744	ProperStrand	1	chr12	15496495	15496585	LINE	Lx9	L1	chr12Lx915496341	ProperStrand	1	1	-inf
chr11	33755081	33755104	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	chr3	19143702	19143735	protein_coding	Pde7a	intron	ENSMUSG00000069094	ProperStrand	17	1	-15.6301
chr9	123461905	123462074	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	72711749	72713600	protein_coding	Ankar	exon	ENSMUSG00000039342	NonProperStrand	61	3	-3.8183
chr7	110059825	110059863	LINE	Lx5	L1	chr7Lx5110059319	NonProperStrand	5	chr7	13053488	13053580	pseudogene	Vmn2r-ps53	.	ENSMUSG00000092583	NonProperStrand	12	1	-inf
chr11	50623420	50623510	LINE	L1MC	L1	chr11L1MC50623377	ProperStrand	1	chr11	50623609	50623709	SINE	RSINE1	B4	chr11RSINE150623635	NonProperStrand	1	1	-inf
chr4	101561846	101561880	LTR	BGLII_A	ERVK	chr4BGLII_A101561791	NonProperStrand	1	chr4	101564278	101564322	protein_coding	C130073F10Rik	intron	ENSMUSG00000046133	NonProperStrand	2	1	-inf
chr19	24138202	24138299	LTR	MTD	MaLR	chr19MTD24138042	NonProperStrand	1	chr1	93407937	93407982	protein_coding	Traf3ip1	intron	ENSMUSG00000034292	NonProperStrand	54	1	-inf
chr4	98782607	98782673	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	chr5	137798319	137798395	protein_coding	Ephb4	intron	ENSMUSG00000029710	ProperStrand	14	2	-20.0717
chr18	63078738	63078754	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr17	34952235	34952311	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	1	-11.9651
chr2	146619839	146619935	SINE	ID_B1	B4	chr2ID_B1146619779	NonProperStrand	1	chr8	91555844	91555879	protein_coding	Sall1	exon	ENSMUSG00000031665	NonProperStrand	129	1	-inf
chr11	109011819	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	36471400	36471508	protein_coding	Sorcs2	intron	ENSMUSG00000029093	NonProperStrand	21	2	-13.1253
chr6	117910171	117910271	SINE	B1_Mur4	Alu	chr6B1_Mur4117910164	NonProperStrand	2	chr6	117909954	117910044	SINE	B4A	B4	chr6B4A117909960	NonProperStrand	1	1	-inf
chr7	139547723	139547813	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	chr12	105032677	105032777	pseudogene	Gm17043	.	ENSMUSG00000090466	NonProperStrand	7	1	-12.5647
chr7	47186414	47186514	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	chr10	122565883	122565973	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-15.3365
chr11	19999170	19999260	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	chr4	98092012	98092112	protein_coding	Inadl	intron	ENSMUSG00000061859	ProperStrand	6	1	-14.5129
chr1	161816641	161816709	protein_coding	Tnr	intron	ENSMUSG00000015829	NonProperStrand	16	chr12	73333787	73333821	protein_coding	Rtn1	intron	ENSMUSG00000021087	NonProperStrand	36	1	-15.7652
chr1	78680621	78680658	protein_coding	Acsl3	intron	ENSMUSG00000032883	ProperStrand	34	chr2	5379290	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.6531
chr16	87483544	87483632	protein_coding	Usp16	utr3	ENSMUSG00000025616	NonProperStrand	4	chr3	108554587	108554658	protein_coding	Aknad1	utr5	ENSMUSG00000049565	NonProperStrand	220	1	-15.1000
chr11	62604510	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr1	92953921	92953961	protein_coding	Lrrfip1	intron	ENSMUSG00000026305	ProperStrand	39	1	-13.7130
chr2	39004788	39004817	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	chr11	119038693	119038712	protein_coding	Tbc1d16	intron	ENSMUSG00000039976	ProperStrand	16	1	-14.4910
chr6	116209053	116209072	protein_coding	D6Wsu116e	exon	ENSMUSG00000024104	ProperStrand	6	chr6	116227401	116227430	protein_coding	Anubl1	intron	ENSMUSG00000042213	ProperStrand	34	1	-18.0170
chr11	33235838	33235923	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	chr7	27338628	27338701	protein_coding	Nlrp9a	intron	ENSMUSG00000054102	NonProperStrand	76	1	-6.9726
chr14	54916868	54916928	LTR	RLTR4_MM-int	ERV1	chr14RLTR4_MM-int54914790	ProperStrand	1	chr10	61343987	61344055	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-inf
chr1	189789968	189790072	protein_coding	Esrrg	intron	ENSMUSG00000026610	ProperStrand	106	chr7	133113578	133113613	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-4.0921
chr17	39847674	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	25633098	25633191	protein_coding	Sstr5	intron	ENSMUSG00000050824	NonProperStrand	3	1	-4.3512
chr11	33156035	33156107	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-4.3995
chr9	62374687	62377335	protein_coding	Coro2b	intron	ENSMUSG00000041729	NonProperStrand	105	chr5	28398412	28398502	protein_coding	Insig1	intron	ENSMUSG00000045294	ProperStrand	10	2	-inf
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	137210751	137210850	LTR	MERVL-int	ERVL	chr5MERVL-int137206849	ProperStrand	1	1	-inf
chr5	97598999	97599107	LTR	ORR1B1	MaLR	chr5ORR1B197598996	NonProperStrand	1	chr9	110281288	110281325	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr11	52268698	52268741	LTR	ORR1A4	MaLR	chr11ORR1A452268668	NonProperStrand	4	chr11	52268530	52268583	SINE	B4	B4	chr11B452268435	ProperStrand	6	1	-inf
chr10	17995062	17995122	LINE	Lx8	L1	chr10Lx817994918	NonProperStrand	1	chr17	39846927	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	34173475	34173494	LTR	MTD	MaLR	chr6MTD34173159	ProperStrand	1	chr15	35498488	35498507	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-inf
chr15	43261115	43261168	LINE	L1_Mus1	L1	chr15L1_Mus143260636	NonProperStrand	4	chr11	79680919	79680962	lincRNA	9130204K15Rik	intron	ENSMUSG00000086474	NonProperStrand	105	1	-16.6016
chr1	9546598	9546674	protein_coding	Adhfe1	intron	ENSMUSG00000025911	ProperStrand	25	chr6	38517343	38517429	protein_coding	Luc7l2	intron	ENSMUSG00000029823	ProperStrand	46	1	-14.3328
chr13	9834305	9834434	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr13	97190561	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	4	-8.8013
chr17	45569473	45569507	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr7	30027448	30027556	protein_coding	Yif1b	intron	ENSMUSG00000030588	ProperStrand	27	1	-10.4110
chrX	8194183	8194273	LINE	L1_Mur3	L1	chrXL1_Mur38194190	NonProperStrand	2	chrX	8194079	8194179	LTR	ORR1C2	MaLR	chrXORR1C28194013	ProperStrand	2	2	-inf
chr11	55480211	55480342	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr7	99657964	99657980	Low_complexity	AT_rich	Low_complexity	chr7AT_rich99657968	ProperStrand	1	1	-inf
chr1	164407692	164407782	protein_coding	Dnm3	intron	ENSMUSG00000040265	NonProperStrand	77	chr1	164407812	164407912	protein_coding	Gm10176	exon	ENSMUSG00000066752	ProperStrand	12	1	-14.8130
chr11	88831526	88831590	LTR	RMER6B	ERVK	chr11RMER6B88831378	NonProperStrand	4	chr17	39846378	39846429	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr9	88457771	88457828	protein_coding	Zfp949	intron	ENSMUSG00000032425	NonProperStrand	42	chr14	64948524	64948602	protein_coding	Msra	intron	ENSMUSG00000054733	ProperStrand	122	1	-11.3165
chr11	102433276	102433293	SINE	B1_Mus1	Alu	chr11B1_Mus1102433162	ProperStrand	3	chr1	167243460	167243487	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	1	-16.1981
chr5	146260993	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	48363398	48363464	protein_coding	Stox2	intron	ENSMUSG00000038143	ProperStrand	98	1	-4.1240
chr14	75846210	75846723	LTR	MTB_Mm	MaLR	chr14MTB_Mm75846072	NonProperStrand	17	chr14	75846788	75847332	SINE	B1F	Alu	chr14B1F75847231	ProperStrand	9	4	-21.3224
chr5	122015869	122015959	SINE	B1_Mus2	Alu	chr5B1_Mus2122015887	ProperStrand	7	chr5	122015768	122015868	SINE	PB1D7	Alu	chr5PB1D7122015753	ProperStrand	7	7	-inf
chr8	22215928	22216006	LTR	RMER3D-int	ERVK	chr8RMER3D-int22215770	ProperStrand	1	chr9	73017566	73017618	LTR	MTE2a	MaLR	chr9MTE2a73017234	NonProperStrand	1	1	-inf
chr13	36204997	36205059	protein_coding	Lyrm4	intron	ENSMUSG00000046573	NonProperStrand	50	chr1	89811889	89811961	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-9.8492
chr19	38060101	38060118	protein_coding	Myof	intron	ENSMUSG00000048612	ProperStrand	8	chr13	8767162	8767199	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	1	-16.9144
chr5	146260994	146261056	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	55231805	55231877	protein_coding	Rftn2	intron	ENSMUSG00000025978	ProperStrand	9	1	-8.8915
chr18	63078741	63078757	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr11	59508695	59508795	protein_coding	Mprip	intron	ENSMUSG00000005417	ProperStrand	15	1	-16.1867
chr17	39847611	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	124888087	124888121	Simple_repeat	(TC)n	Simple_repeat	chr5(TC)n124888075	ProperStrand	1	1	-inf
chr5	145344999	145345089	LTR	IAP-d-int	ERVK	chr5IAP-d-int145342707	NonProperStrand	1	chr5	145345246	145345346	LTR	RLTR10D	ERVK	chr5RLTR10D145345071	NonProperStrand	1	1	-inf
chr17	28420682	28420735	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	chr1	89545237	89545254	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	18	1	-13.3635
chr14	63138027	63138086	LINE	Lx9	L1	chr14Lx963137420	ProperStrand	2	chr9	96163281	96163383	protein_coding	Tfdp2	intron	ENSMUSG00000032411	ProperStrand	65	1	-20.1199
chr1	58566196	58566281	lincRNA	Gm15834	intron	ENSMUSG00000085054	NonProperStrand	3	chr18	64516443	64516499	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	2	-22.0052
chr17	39847853	39847902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	30097047	30097127	protein_coding	Dpf1	intron	ENSMUSG00000030584	ProperStrand	5	1	-3.2379
chr12	99544701	99544820	LTR	RLTR13A3	ERVK	chr12RLTR13A399543934	ProperStrand	1	chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847188	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	116116819	116116842	protein_coding	Srp68	intron	ENSMUSG00000020780	ProperStrand	6	1	-3.9545
chr8	45050934	45051705	LINE	L1Md_T	L1	chr8L1Md_T45046595	ProperStrand	10	chr17	39847246	39847311	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-5.2538
chr1	172507078	172507110	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	chr4	32832288	32832345	protein_coding	Mdn1	intron	ENSMUSG00000058006	NonProperStrand	27	1	-11.5592
chr16	4033092	4033147	antisense	Gm15879	.	ENSMUSG00000084790	ProperStrand	1	chr13	112578229	112578297	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr4	106923525	106925127	protein_coding	Lrrc42	intron	ENSMUSG00000028617	NonProperStrand	62	chr4	106932746	106947529	protein_coding	Hspb11	intron	ENSMUSG00000063172	ProperStrand	93	2	-17.4768
chr17	39846353	39846427	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	88996749	88996830	protein_coding	Plxnb2	intron	ENSMUSG00000036606	NonProperStrand	5	1	-3.1907
chr9	118674951	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr11	113263763	113263853	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-3.0924
chr2	44861506	44861595	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	chr16	30993322	30993422	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	1	-9.4512
chr1	43074809	43074911	LTR	ORR1D2	MaLR	chr1ORR1D243074598	ProperStrand	2	chr1	43074932	43075022	SINE	B1_Mur1	Alu	chr1B1_Mur143074942	ProperStrand	2	2	-inf
chr13	66433462	66433749	LINE	L1_Mm	L1	chr13L1_Mm66433355	NonProperStrand	1	chr15	102127570	102127589	protein_coding	Espl1	intron	ENSMUSG00000058290	ProperStrand	3	1	-inf
chr13	44869575	44869614	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr5	140440016	140441033	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	81	1	-3.9244
chr5	32738077	32738107	DNA	RCHARR1	MER1_type	chr5RCHARR132737935	NonProperStrand	5	chr8	114533646	114533712	protein_coding	Kars	intron	ENSMUSG00000031948	NonProperStrand	70	1	-16.9014
chrX	132315794	132315813	protein_coding	Gprasp1	intron	ENSMUSG00000043384	ProperStrand	2	chr4	19534089	19534170	protein_coding	Gm12353	intron	ENSMUSG00000078772	NonProperStrand	4	2	-inf
chr8	122018146	122018246	protein_coding-noncoding	Slc38a8	utr3	ENSMUSG00000034224	NonProperStrand	13	chr8	122018060	122018150	protein_coding	Slc38a8	intron	ENSMUSG00000034224	NonProperStrand	70	2	-inf
chr17	74579756	74579806	Low_complexity	GA-rich	Low_complexity	chr17GA-rich74579758	ProperStrand	1	chr8	13313172	13313232	protein_coding	Tmco3	intron	ENSMUSG00000038497	ProperStrand	26	1	-inf
chr1	89516384	89516480	LTR	MTEa	MaLR	chr1MTEa89516390	NonProperStrand	4	chr4	98733767	98733808	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	1	-16.5138
chr12	79853040	79853095	protein_coding	Mpp5	intron	ENSMUSG00000021112	ProperStrand	6	chr12	79831455	79831476	protein_coding	Fam71d	intron	ENSMUSG00000056987	ProperStrand	53	1	-17.0058
chr1	136364891	136364950	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr4	59899736	59899831	protein_coding	Snx30	intron	ENSMUSG00000028385	ProperStrand	123	2	-14.1818
chr18	4848036	4848126	lincRNA	Gm10556	intron	ENSMUSG00000073646	NonProperStrand	2	chr18	5637517	5637617	sense_intronic	RP23-345J21.1	.	ENSMUSG00000093717	ProperStrand	12	1	-inf
chr6	135730538	135730587	protein_coding	Grin2b	intron	ENSMUSG00000030209	ProperStrand	8	chr2	24652284	24652317	protein_coding	Ehmt1	intron	ENSMUSG00000036893	ProperStrand	27	1	-17.7574
chr4	53860712	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr14	7945922	7945995	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-6.9784
chr5	146261004	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	64174886	64176760	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	3	-6.0362
chr1	89497538	89497602	LINE	L1MEc	L1	chr1L1MEc89497531	ProperStrand	1	chr1	89498206	89498273	LTR	MLT1D	MaLR	chr1MLT1D89498222	ProperStrand	3	1	-inf
chr6	149140528	149140618	LTR	LTRIS2	ERV1	chr6LTRIS2149140472	NonProperStrand	1	chr6	149140026	149140126	LTR	LTRIS_Mus	ERV1	chr6LTRIS_Mus149139586	ProperStrand	1	1	-inf
chr9	63993304	63993371	protein_coding	Zwilch	intron	ENSMUSG00000032400	ProperStrand	48	chr16	37019472	37019498	protein_coding	Polq	intron	ENSMUSG00000034206	ProperStrand	23	1	-14.4149
chr17	39843708	39843762	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr7	127991377	127991421	protein_coding	Eef2k	intron	ENSMUSG00000035064	NonProperStrand	12	1	-6.0801
chr9	110281288	110281315	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	126591125	126591219	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	28	1	-9.0952
chr12	57112140	57112159	SINE	B4A	B4	chr12B4A57111957	NonProperStrand	5	chr16	15951460	15951560	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	1	-16.0102
chr17	39846747	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	7677270	7677950	LTR	RLTR1B	ERV1	chr6RLTR1B7677060	NonProperStrand	5	1	-3.1907
chr5	30118373	30118389	SINE	B1_Mm	Alu	chr5B1_Mm30118256	NonProperStrand	1	chr2	35650026	35650107	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	1	-inf
chr9	110281293	110281337	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr10	94781112	94781204	protein_coding	Cradd	intron	ENSMUSG00000045867	NonProperStrand	36	1	-8.5873
chr1	23958509	23958599	SINE	RSINE1	B4	chr1RSINE123958531	NonProperStrand	1	chr1	23958237	23958337	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n23958181	NonProperStrand	1	1	-inf
chr12	24841139	24841239	SINE	B1_Mus1	Alu	chr12B1_Mus124841127	NonProperStrand	1	chr12	24841008	24841098	Simple_repeat	(TTTA)n	Simple_repeat	chr12(TTTA)n24841018	ProperStrand	1	1	-inf
chr17	40355498	40355588	LINE	L1_Rod	L1	chr17L1_Rod40355133	NonProperStrand	1	chr17	40356087	40356187	LINE	L1_Rod	L1	chr17L1_Rod40355960	NonProperStrand	1	1	-inf
chr15	76409232	76409374	protein_coding	Adck5	intron	ENSMUSG00000022550	ProperStrand	25	chr8	111385828	111385844	protein_coding	Zfhx3	intron	ENSMUSG00000038872	ProperStrand	7	1	-18.3660
chr9	86699131	86699739	protein_coding	Snap91	intron	ENSMUSG00000033419	ProperStrand	34	chr8	123443315	123443403	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-8.0686
chr10	80081989	80082056	SINE	B1_Mus1	Alu	chr10B1_Mus180081923	NonProperStrand	1	chr11	115850004	115850098	protein_coding	Itgb4	intron	ENSMUSG00000020758	ProperStrand	37	1	-inf
chr13	23555227	23555365	protein_coding	Btn1a1	intron	ENSMUSG00000000706	NonProperStrand	212	chr17	8385965	8385981	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-11.4324
chr1	119035065	119035125	LINE	L1Md_F3	L1	chr1L1Md_F3119034588	NonProperStrand	13	chr1	119013906	119013962	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n119013880	NonProperStrand	1	1	-inf
chr6	122451683	122451771	LTR	ORR1B1	MaLR	chr6ORR1B1122451451	ProperStrand	1	chr8	121590469	121590510	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	1	-inf
chr11	48800884	48800934	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr16	96870036	96870111	protein_coding	Dscam	intron	ENSMUSG00000050272	ProperStrand	27	1	-10.8824
chr14	8626423	8626455	LTR	ORR1A4	MaLR	chr14ORR1A48626284	ProperStrand	1	chr14	8622376	8622495	processed_transcript	Gm10044	.	ENSMUSG00000072723	ProperStrand	28	1	-inf
chr5	33521002	33521094	LTR	RMER19B	ERVK	chr5RMER19B33520995	ProperStrand	13	chr5	33520880	33521010	Simple_repeat	(CATATA)n	Simple_repeat	chr5(CATATA)n33520832	NonProperStrand	5	5	-inf
chr1	135748242	135748342	LTR	MTD-int	MaLR	chr1MTD-int135748257	NonProperStrand	2	chr1	135748154	135748244	SINE	B3	B2	chr1B3135748104	NonProperStrand	2	2	-inf
chr12	21890146	21890246	LTR	MTC	MaLR	chr12MTC21890019	NonProperStrand	1	chr10	128076173	128076264	protein_coding	Ikzf4	intron	ENSMUSG00000002578	NonProperStrand	38	1	-inf
chr19	11630888	11630909	protein_coding	Ms4a4d	intron	ENSMUSG00000024678	ProperStrand	1	chr10	116809507	116809610	protein_coding	Cpsf6	intron	ENSMUSG00000055531	NonProperStrand	18	1	-inf
chr9	110281285	110281326	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr13	51744423	51744487	protein_coding	Cks2	intron	ENSMUSG00000062248	NonProperStrand	8	1	-11.6904
chr15	58026558	58026596	protein_coding	Fbxo32	intron	ENSMUSG00000022358	ProperStrand	17	chr16	57462810	57462875	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	1	-11.0719
chr17	39847348	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	100159555	100159668	lincRNA	Gm16744	intron	ENSMUSG00000086002	ProperStrand	5	2	-5.9065
chr3	144505858	144505897	protein_coding	Clca4	intron	ENSMUSG00000037033	ProperStrand	58	chr13	44869615	44869664	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.5574
chr16	11091719	11091741	protein_coding	Txndc11	exon	ENSMUSG00000022498	ProperStrand	30	chr9	110056426	110056505	protein_coding	Smarcc1	intron	ENSMUSG00000032481	ProperStrand	174	1	-11.2866
chr12	65842914	65842942	LINE	Lx6	L1	chr12Lx665842899	ProperStrand	2	chr4	133612116	133612203	protein_coding	Gm13060	intron	ENSMUSG00000049410	NonProperStrand	8	2	-inf
chr5	62613106	62613124	LINE	L1Md_T	L1	chr5L1Md_T62610830	NonProperStrand	3	chr4	150560596	150560718	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-14.5896
chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	chr6	71882556	71882692	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-11.1727
chr14	118484049	118484133	LINE	Lx2B	L1	chr14Lx2B118483444	ProperStrand	1	chr3	32510711	32510729	protein_coding	Gnb4	intron	ENSMUSG00000027669	ProperStrand	7	1	-inf
chr8	104616078	104616094	LINE	Lx3_Mus	L1	chr8Lx3_Mus104614584	ProperStrand	1	chr13	9427492	9427628	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-inf
chr13	44869624	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr4	59662844	59662957	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	ProperStrand	123	1	-3.1571
chr11	21109519	21109609	LINE	Lx	L1	chr11Lx21109345	NonProperStrand	1	chr11	21109611	21109711	LTR	RLTR44A	ERVK	chr11RLTR44A21109592	NonProperStrand	1	1	-inf
chr6	49236498	49236588	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr2	32963383	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-6.2331
chr17	45744590	45744689	LINE	Lx8	L1	chr17Lx845744468	ProperStrand	1	chr3	94604554	94604580	LTR	MER57D	ERV1	chr3MER57D94604524	NonProperStrand	1	1	-inf
chr6	35210965	35212751	lincRNA	1810058I24Rik	intron	ENSMUSG00000073155	ProperStrand	16	chr6	35234704	35234720	protein_coding	Slc13a4	intron	ENSMUSG00000029843	NonProperStrand	32	1	-15.9908
chr17	39847242	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	135064134	135064200	protein_coding	Myst1	intron	ENSMUSG00000030801	ProperStrand	8	1	-3.3803
chr9	123461821	123462159	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr7	16916621	16917166	protein_coding	Sae1	intron	ENSMUSG00000052833	ProperStrand	49	4	-6.4231
chr14	99091455	99095211	LINE	Lx6	L1	chr14Lx699094553	NonProperStrand	1	chr2	5379296	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr5	70803852	70803942	LINE	Lx2	L1	chr5Lx270803843	NonProperStrand	1	chr5	70803601	70803701	LINE	Lx3_Mus	L1	chr5Lx3_Mus70803605	ProperStrand	1	1	-inf
chr1	152838672	152838702	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	chr5	107907370	107907410	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-9.7551
chr16	58677962	58677995	protein_coding	Cpox	intron	ENSMUSG00000022742	ProperStrand	9	chr12	100443171	100443265	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	1	-14.2691
chr18	21664691	21664791	LINE	L1Md_F3	L1	chr18L1Md_F321664626	NonProperStrand	1	chr18	21664549	21664639	LINE	L1_Mus1	L1	chr18L1_Mus121661504	NonProperStrand	2	1	-inf
chr18	33795162	33795295	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	29	chr9	123461806	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-4.2823
chr8	106053266	106053322	LINE	L1M5	L1	chr8L1M5106053217	NonProperStrand	1	chr14	66843332	66843398	protein_coding	Ptk2b	intron	ENSMUSG00000059456	ProperStrand	38	1	-inf
chr3	77361403	77361420	LINE	L1VL4	L1	chr3L1VL477361182	ProperStrand	1	chr15	76048823	76049021	protein_coding	Plec	intron	ENSMUSG00000022565	ProperStrand	94	1	-inf
chr2	31040942	31074458	protein_coding-noncoding	Gpr107	utr5	ENSMUSG00000000194	NonProperStrand	14	chr2	31041089	31074373	protein_coding	Gpr107	intron	ENSMUSG00000000194	NonProperStrand	164	9	-20.0321
chr3	103888617	103888707	protein_coding	Magi3	intron	ENSMUSG00000052539	NonProperStrand	69	chr3	102893863	102893963	protein_coding	Ampd1	intron	ENSMUSG00000070385	ProperStrand	2	1	-18.7948
chr8	23191036	23191081	protein_coding	Nek5	intron	ENSMUSG00000037738	ProperStrand	19	chr2	5379271	5379340	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.8156
chr2	167029647	167031335	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	chr5	74061317	74061451	protein_coding	Spata18	intron	ENSMUSG00000029155	NonProperStrand	27	1	-14.3126
chr5	140165839	140165929	Simple_repeat	(TGGA)n	Simple_repeat	chr5(TGGA)n140165819	NonProperStrand	2	chr5	140165692	140165792	Simple_repeat	(TGGG)n	Simple_repeat	chr5(TGGG)n140165672	NonProperStrand	1	1	-inf
chr11	87426780	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr18	10151051	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-12.8631
chr15	5218234	5218250	LINE	L1Md_Gf	L1	chr15L1Md_Gf5216858	ProperStrand	1	chr11	101604923	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-inf
chr9	123462045	123462174	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	37015837	37015854	protein_coding	F13a1	intron	ENSMUSG00000039109	ProperStrand	4	1	-6.3300
chr16	17856866	17857295	protein_coding	Dgcr2	exon	ENSMUSG00000003166	ProperStrand	18	chr16	17858406	17858496	protein_coding	Gm20518	intron	ENSMUSG00000092470	ProperStrand	59	3	-20.4329
chr17	17471940	17472030	LINE	Lx3_Mus	L1	chr17Lx3_Mus17471191	ProperStrand	1	chr7	5409569	5409669	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	1	-inf
chr17	31648034	31648223	protein_coding	Wdr4	intron	ENSMUSG00000024037	ProperStrand	95	chr17	24425314	24425363	protein_coding	Abca17	intron	ENSMUSG00000035435	NonProperStrand	73	1	-10.7045
chr17	39847160	39847213	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	87935405	87935499	SINE	PB1D7	Alu	chr3PB1D787935366	ProperStrand	1	1	-inf
chr8	69902249	69902266	LINE	Lx7	L1	chr8Lx769901998	NonProperStrand	2	chr13	44869574	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr17	39848598	39848717	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	69088770	69088801	SINE	MIRc	MIR	chr8MIRc69088687	ProperStrand	1	1	-inf
chr3	41608870	41608960	LINE	L1_Mus1	L1	chr3L1_Mus141607357	ProperStrand	15	chr3	41606237	41606337	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int41605923	ProperStrand	1	1	-inf
chr3	32425264	32425355	LTR	RLTR1B	ERV1	chr3RLTR1B32424800	NonProperStrand	1	chr3	32425525	32425556	SINE	B1F2	Alu	chr3B1F232425492	NonProperStrand	1	1	-inf
chr2	94410829	94410929	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n94410834	ProperStrand	2	chr2	94410720	94410810	Simple_repeat	(TC)n	Simple_repeat	chr2(TC)n94410722	ProperStrand	2	2	-inf
chr11	69972202	69972233	LTR	MERVL-int	ERVL	chr11MERVL-int69969842	NonProperStrand	2	chr17	39847803	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	101604923	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	chr4	44783198	44783230	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-11.5275
chr11	96972116	96972156	protein_coding	Tbx21	intron	ENSMUSG00000001444	ProperStrand	15	chr11	107307399	107307445	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-11.5498
chr13	109897740	109897772	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr2	154450246	154450365	protein_coding	Zfp341	intron	ENSMUSG00000059842	ProperStrand	110	1	-6.7747
chr17	11311445	11311463	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr5	118593942	118594052	protein_coding	Fbxw8	intron	ENSMUSG00000032867	NonProperStrand	108	1	-8.5653
chr2	150203147	150203213	LINE	L1Md_F2	L1	chr2L1Md_F2150203010	NonProperStrand	1	chr4	141070439	141070498	protein_coding	Spen	intron	ENSMUSG00000040761	ProperStrand	77	1	-inf
chr10	35036632	35036722	LINE	L1Md_A	L1	chr10L1Md_A35035896	ProperStrand	2	chr10	35037086	35037186	LINE	L1_Mus2	L1	chr10L1_Mus235036894	ProperStrand	1	1	-inf
chr1	180145550	180145594	protein_coding	Pppde1	intron	ENSMUSG00000026502	ProperStrand	28	chr13	97190573	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.6258
chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	chr13	97190601	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.5918
chr14	99081257	99081331	DNA	RCHARR1	MER1_type	chr14RCHARR199081154	NonProperStrand	1	chrX	142083532	142083550	LINE	L1MB7	L1	chrXL1MB7142083512	ProperStrand	1	1	-inf
chr11	117827280	117827371	SINE	MIR3	MIR	chr11MIR3117827276	NonProperStrand	1	chr11	117827399	117827432	protein_coding	Socs3	utr3	ENSMUSG00000053113	NonProperStrand	3	1	-inf
chr8	73759002	73759061	LINE	Lx4B	L1	chr8Lx4B73758774	NonProperStrand	1	chr16	48589265	48589347	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	1	-inf
chrX	95946940	95946986	protein_coding	Ophn1	intron	ENSMUSG00000031214	ProperStrand	39	chr13	44869576	44869644	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.3266
chr11	69667356	69667429	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr11	102307950	102308018	protein_coding	Fam171a2	intron	ENSMUSG00000034685	ProperStrand	37	1	-9.9903
chr17	39846390	39846497	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	4213817	4213833	protein_coding	BC068157	exon	ENSMUSG00000064125	NonProperStrand	1	1	-inf
chr13	14625383	14625470	LINE	L1_Mus1	L1	chr13L1_Mus114625318	NonProperStrand	1	chr9	123461882	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	30058473	30058501	Simple_repeat	(CAAA)n	Simple_repeat	chr5(CAAA)n30058478	ProperStrand	1	chr16	8555496	8555585	protein_coding	Abat	intron	ENSMUSG00000057880	NonProperStrand	19	1	-inf
chr17	39847247	39847337	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	19577397	19577497	protein_coding	Mypop	utr5	ENSMUSG00000048481	ProperStrand	8	1	-3.3803
chr14	94816988	94817005	Low_complexity	CT-rich	Low_complexity	chr14CT-rich94816942	ProperStrand	1	chr12	78350912	78351040	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr8	91626596	91626655	LINE	L1_Mus1	L1	chr8L1_Mus191623255	NonProperStrand	22	chr8	91628007	91628047	LINE	L1_Mus1	L1	chr8L1_Mus191627113	NonProperStrand	5	1	-20.3524
chr5	119529077	119529177	DNA	URR1A	MER1_type	chr5URR1A119528986	ProperStrand	1	chr5	119529339	119529429	SINE	B3	B2	chr5B3119529242	ProperStrand	1	1	-inf
chr2	121183687	121184420	protein_coding	Ckmt1	utr5	ENSMUSG00000000308	ProperStrand	6	chr2	121197257	121197357	protein_coding	Strc	intron	ENSMUSG00000033498	NonProperStrand	6	1	-inf
chr4	72157799	72157815	LTR	IAP-d-int	ERVK	chr4IAP-d-int72152399	ProperStrand	2	chr16	22161285	22161301	protein_coding-noncoding	Igf2bp2	utr3	ENSMUSG00000033581	NonProperStrand	3	1	-20.8297
chr2	129477284	129477384	LTR	ORR1D1	MaLR	chr2ORR1D1129477102	NonProperStrand	1	chr2	129477495	129477585	SINE	MIR	MIR	chr2MIR129477449	ProperStrand	1	1	-inf
chr16	17679406	17679449	protein_coding	Med15	intron	ENSMUSG00000012114	ProperStrand	39	chr2	30151481	30151552	protein_coding	Phyhd1	intron	ENSMUSG00000079484	ProperStrand	34	1	-14.0407
chr12	59003993	59004067	LINE	Lx8	L1	chr12Lx859003887	NonProperStrand	1	chr5	33650710	33650754	lincRNA	Gm20465	intron	ENSMUSG00000092275	ProperStrand	22	1	-inf
chr4	130751278	130751513	SINE	B4A	B4	chr4B4A130751297	NonProperStrand	10	chr4	130751512	130751642	SINE	B4A	B4	chr4B4A130751505	NonProperStrand	4	4	-inf
chr1	118498203	118498282	LINE	Lx2A1	L1	chr1Lx2A1118497697	NonProperStrand	1	chr17	39843644	39843707	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr12	54696804	54696850	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr4	24581674	24581784	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	2	-14.6885
chrX	100042581	100042672	LTR	MTC-int	MaLR	chrXMTC-int100042554	ProperStrand	4	chrX	100046803	100046904	protein_coding	Dmrtc1c2	intron	ENSMUSG00000067561	NonProperStrand	4	4	-inf
chr17	39847981	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	120642948	120643272	protein_coding	Rfng	intron	ENSMUSG00000025158	ProperStrand	1	1	-inf
chr16	4789143	4789202	protein_coding	5730403B10Rik	intron	ENSMUSG00000004071	ProperStrand	45	chr13	44869576	44869664	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.0474
chr2	114229614	114229704	LINE	L1_Mus1	L1	chr2L1_Mus1114228765	ProperStrand	1	chr2	114229823	114229923	LTR	ORR1C1	MaLR	chr2ORR1C1114229844	ProperStrand	1	1	-inf
chr5	34699987	34700030	SINE	B4A	B4	chr5B4A34699948	ProperStrand	1	chr3	32610036	32610114	protein_coding	Actl6a	intron	ENSMUSG00000027671	NonProperStrand	2	1	-inf
chr2	153016429	153016519	protein_coding-noncoding	Tm9sf4	utr5	ENSMUSG00000068040	NonProperStrand	1	chr2	153016081	153016181	protein_coding	Tm9sf4	intron	ENSMUSG00000068040	NonProperStrand	22	1	-inf
chr7	135696415	135696455	SINE	B1F1	Alu	chr7B1F1135696387	ProperStrand	1	chr9	123461930	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	104500222	104500325	LINE	L1_Mus3	L1	chr14L1_Mus3104500002	NonProperStrand	2	chr7	105742983	105743011	protein_coding	2210018M11Rik	intron	ENSMUSG00000035401	ProperStrand	27	1	-21.9988
chr4	56906784	56906872	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	140	chr13	94389164	94389211	protein_coding	Bhmt	intron	ENSMUSG00000074768	NonProperStrand	12	1	-13.6061
chr17	39847439	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	109683252	109683334	protein_coding	Olfr547	exon	ENSMUSG00000073979	NonProperStrand	3	1	-4.3512
chr7	137030758	137030816	LINE	Lx5	L1	chr7Lx5137029985	ProperStrand	1	chr7	6326977	6327009	protein_coding	Zfp78	intron	ENSMUSG00000055150	NonProperStrand	2	1	-inf
chr12	51671315	51671414	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	chr16	8653075	8653126	protein_coding	Pmm2	intron	ENSMUSG00000022711	ProperStrand	6	2	-inf
chr2	91352144	91352234	protein_coding	Lrp4	utr3	ENSMUSG00000027253	ProperStrand	3	chr2	76986876	76986976	protein_coding	Ccdc141	intron	ENSMUSG00000044033	NonProperStrand	5	1	-inf
chr14	26630527	26630574	LTR	ORR1D2	MaLR	chr14ORR1D226630388	ProperStrand	1	chr17	39847249	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39847207	39847257	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	47086275	47087080	protein_coding	Gm949	intron	ENSMUSG00000073568	ProperStrand	1	1	-inf
chr8	48243791	48243823	LTR	MTA_Mm	MaLR	chr8MTA_Mm48243442	NonProperStrand	1	chr8	48246687	48246804	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n48246391	NonProperStrand	1	1	-inf
chr17	39847736	39847803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	18532755	18532816	Low_complexity	GA-rich	Low_complexity	chr10GA-rich18532726	ProperStrand	1	1	-inf
chr2	157544878	157544978	LTR	MTD	MaLR	chr2MTD157544767	ProperStrand	1	chr2	157544988	157545078	SINE	B3	B2	chr2B3157544977	ProperStrand	1	1	-inf
chr17	84768349	84768389	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	chrX	134605919	134605965	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-8.1586
chr11	50381575	50381610	LINE	L1MA5	L1	chr11L1MA550381487	NonProperStrand	1	chr14	64405572	64405690	protein_coding	Xkr6	intron	ENSMUSG00000035067	NonProperStrand	62	1	-inf
chrX	103471168	103471294	LINE	L1Md_F2	L1	chrXL1Md_F2103469145	NonProperStrand	25	chr9	110944646	110944676	protein_coding	Ltf	exon	ENSMUSG00000032496	NonProperStrand	104	2	-20.8719
chr17	39848250	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	127860426	127860458	protein_coding	Tmem132c	intron	ENSMUSG00000034324	ProperStrand	11	1	-4.5229
chr10	62569485	62569559	LTR	IAPEz-int	ERVK	chr10IAPEz-int62567027	NonProperStrand	2	chr17	83862002	83862038	protein_coding	Eml4	intron	ENSMUSG00000032624	ProperStrand	63	1	-18.9170
chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	148006506	148006597	LTR	RLTR18B	ERVK	chr4RLTR18B148006522	NonProperStrand	4	1	-3.6552
chr6	38118412	38118512	protein_coding-noncoding	D630045J12Rik	utr3	ENSMUSG00000063455	ProperStrand	1	chr6	38118549	38118639	protein_coding	D630045J12Rik	intron	ENSMUSG00000063455	ProperStrand	34	1	-inf
chr18	70478016	70478126	LTR	ETnERV2-int	ERVK	chr18ETnERV2-int70477357	ProperStrand	1	chr18	70481289	70481324	LTR	RLTR17	ERVK	chr18RLTR1770481270	ProperStrand	1	1	-inf
chr6	3201434	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	80867459	80867477	protein_coding	Nfic	intron	ENSMUSG00000055053	ProperStrand	12	1	-5.9865
chr7	47188527	47188627	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	chr11	8354818	8354908	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	1	-8.9710
chr7	19537247	19537292	protein_coding	Nova2	intron	ENSMUSG00000030411	NonProperStrand	37	chr8	95879829	95879878	protein_coding	Ces1h	intron	ENSMUSG00000074156	ProperStrand	31	1	-14.3402
chr2	37922514	37922614	protein_coding	Dennd1a	intron	ENSMUSG00000035392	NonProperStrand	20	chr2	38662947	38663037	protein_coding	Nr6a1	intron	ENSMUSG00000063972	NonProperStrand	31	1	-15.5963
chr16	40819847	40819947	LINE	L1Md_T	L1	chr16L1Md_T40819591	ProperStrand	1	chr14	33967463	33967553	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr15	84828546	84828581	LTR	MTE2a	MaLR	chr15MTE2a84828371	ProperStrand	1	chr15	84828972	84829077	SINE	B1_Mur4	Alu	chr15B1_Mur484828912	ProperStrand	1	1	-inf
chr10	40258595	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	6838418	6838435	protein_coding	Celf2	intron	ENSMUSG00000002107	NonProperStrand	24	1	-7.1747
chr19	3559769	3559867	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	chr13	78236153	78236175	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-9.2313
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr5	92472876	92472950	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-9.8253
chr15	34119555	34119655	LTR	RLTR47_MM	ERV1	chr15RLTR47_MM34119441	NonProperStrand	2	chr19	4446390	4446480	protein_coding	Syt12	utr3	ENSMUSG00000049303	ProperStrand	3	2	-inf
chr10	42514592	42514668	protein_coding	Sec63	intron	ENSMUSG00000019802	ProperStrand	36	chr2	29059307	29059393	protein_coding	Ntng2	utr3	ENSMUSG00000035513	ProperStrand	2	1	-20.3707
chr13	44869609	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr7	35037424	35037472	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	ProperStrand	102	1	-3.4971
chr14	65833172	65833220	protein_coding	Fzd3	intron	ENSMUSG00000007989	ProperStrand	21	chr5	121208573	121208869	protein_coding	Oas3	exon	ENSMUSG00000032661	NonProperStrand	174	1	-12.0135
chr13	36581305	36581373	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	chr3	9561188	9561225	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-3.5423
chr2	20752341	20752441	LINE	Lx5	L1	chr2Lx520752318	ProperStrand	2	chr2	20752213	20752303	SINE	B2_Mm1a	B2	chr2B2_Mm1a20752126	ProperStrand	3	2	-inf
chr7	67538132	67543873	LINE	Lx8	L1	chr7Lx867537703	NonProperStrand	1	chr7	67543969	67544059	LTR	MTD	MaLR	chr7MTD67543824	NonProperStrand	1	1	-inf
chr5	34884293	34884388	protein_coding	Sh3bp2	intron	ENSMUSG00000054520	ProperStrand	25	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-13.0026
chr17	39846818	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	157874210	157874336	protein_coding-noncoding	Rprd1b	utr5	ENSMUSG00000027651	ProperStrand	4	1	-3.6552
chr2	173248623	173248665	LTR	MTA_Mm-int	MaLR	chr2MTA_Mm-int173247632	ProperStrand	17	chr11	44778587	44778657	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	1	-13.1123
chr10	40258537	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr15	64156772	64156792	protein_coding	Asap1	intron	ENSMUSG00000022377	NonProperStrand	6	1	-10.0669
chr14	32288949	32289039	LINE	Lx4B	L1	chr14Lx4B32288534	ProperStrand	4	chr14	32290970	32291070	LTR	MTA_Mm	MaLR	chr14MTA_Mm32290656	ProperStrand	4	4	-inf
chr8	18713927	18714001	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr17	47349517	47349576	protein_coding	Trerf1	intron	ENSMUSG00000064043	ProperStrand	109	1	-5.7328
chr4	144444437	144444527	LTR	MMETn-int	ERVK	chr4MMETn-int144443140	NonProperStrand	1	chr4	144444813	144444913	LTR	MMETn-int	ERVK	chr4MMETn-int144444794	NonProperStrand	1	1	-inf
chr5	66542563	66542663	lincRNA	Gm16885	exon	ENSMUSG00000086102	ProperStrand	3	chr5	66542321	66542411	protein_coding	Rbm47	utr5	ENSMUSG00000070780	NonProperStrand	3	1	-20.2168
chr2	22744837	22744919	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	118674950	118675017	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	8	-13.6948
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr11	113784109	113784126	protein_coding	Sdk2	intron	ENSMUSG00000041592	ProperStrand	144	1	-6.1142
chr17	70963741	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr12	112160752	112160785	protein_coding	Tecpr2	intron	ENSMUSG00000021275	ProperStrand	75	4	-17.5378
chr17	39847767	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	44607138	44607171	protein_coding	Tmem25	utr5	ENSMUSG00000002032	NonProperStrand	2	1	-5.4040
chrY	821088	821192	LINE	L1_Mus3	L1	chrYL1_Mus3820532	NonProperStrand	1	chr17	39847196	39847247	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	126994210	126994310	LTR	RMER5	ERV1	chr4RMER5126994133	ProperStrand	1	chr4	126994424	126994514	SINE	B2_Mm2	B2	chr4B2_Mm2126994338	NonProperStrand	1	1	-inf
chr10	3973453	3973484	LTR	RLTR18B	ERVK	chr10RLTR18B3973286	ProperStrand	1	chr17	39846951	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	146261008	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	70895415	70895451	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-3.6847
chr5	118224703	118224832	Simple_repeat	(TGGA)n	Simple_repeat	chr5(TGGA)n118224689	NonProperStrand	1	chr13	97190541	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr6	100254653	100254743	SINE	B1_Mus2	Alu	chr6B1_Mus2100254673	NonProperStrand	2	chr6	100254324	100254425	SINE	RSINE1	B4	chr6RSINE1100254280	NonProperStrand	2	2	-inf
chr1	66188822	66188877	SINE	B3	B2	chr1B366188665	NonProperStrand	1	chr15	86194986	86195031	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-inf
chr17	39848200	39848274	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	77909959	77910000	protein_coding	Gcm1	intron	ENSMUSG00000023333	NonProperStrand	2	1	-8.4422
chr3	41614578	41614635	LINE	Lx5	L1	chr3Lx541612244	ProperStrand	43	chr17	39843411	39843480	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-3.1550
chr16	57345858	57345895	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr10	94676149	94676166	protein_coding	Cradd	intron	ENSMUSG00000045867	NonProperStrand	36	1	-9.5432
chr1	91285483	91285509	Low_complexity	GA-rich	Low_complexity	chr1GA-rich91285378	ProperStrand	1	chr2	5536370	5536466	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr4	85455490	85455580	DNA	Tigger15a	TcMar	chr4Tigger15a85455503	ProperStrand	2	chr4	85455287	85455389	SINE	B4A	B4	chr4B4A85455186	ProperStrand	2	2	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr9	40803992	40804080	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.7247
chr5	145133897	145133944	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	chr16	32392366	32392400	protein_coding	Ubxn7	utr3	ENSMUSG00000053774	ProperStrand	53	1	-11.3698
chr19	21276735	21276767	LTR	RMER15	ERVL	chr19RMER1521276325	ProperStrand	1	chr19	21276795	21276893	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n21276795	ProperStrand	2	1	-inf
chr18	17173499	17173599	LINE	L1_Mus2	L1	chr18L1_Mus217173513	ProperStrand	1	chr18	17173196	17173286	LTR	RLTR10C	ERVK	chr18RLTR10C17173078	ProperStrand	1	1	-inf
chr1	59543706	59543723	protein_coding	Fzd7	utr3	ENSMUSG00000041075	NonProperStrand	8	chr7	133091308	133091449	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-9.2646
chr16	97755135	97755151	LTR	RMER19B	ERVK	chr16RMER19B97754916	NonProperStrand	2	chr17	39847171	39847252	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr8	86385121	86385221	LTR	LTRIS2	ERV1	chr8LTRIS286384753	ProperStrand	1	chr8	86385244	86385334	SINE	B2_Mm2	B2	chr8B2_Mm286385229	NonProperStrand	1	1	-inf
chr5	56120003	56120103	LINE	L1Md_A	L1	chr5L1Md_A56117138	NonProperStrand	1	chr5	56181356	56181446	LINE	Lx2	L1	chr5Lx256181247	ProperStrand	1	1	-inf
chr15	53268411	53268470	SINE	B1_Mus2	Alu	chr15B1_Mus253268347	ProperStrand	1	chr9	110281273	110281342	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr16	25555156	25555256	LTR	MTD	MaLR	chr16MTD25554842	NonProperStrand	1	chr16	25555323	25555413	SINE	B4	B4	chr16B425555306	NonProperStrand	1	1	-inf
chr1	77505276	77505306	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	chr4	25694196	25694251	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-9.1548
chr14	32295181	32295246	protein_coding	Mettl6	intron	ENSMUSG00000021891	NonProperStrand	8	chr5	77309056	77309093	protein_coding	Aasdh	exon	ENSMUSG00000055923	ProperStrand	15	1	-19.1188
chr17	39846622	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	61931882	61932124	LTR	ORR1A2	MaLR	chr9ORR1A261931852	NonProperStrand	1	1	-inf
chr19	47896469	47896486	protein_coding	Wdr96	intron	ENSMUSG00000044948	ProperStrand	15	chr7	141211666	141211774	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-12.6275
chr7	92654186	92654249	LINE	L1Md_F2	L1	chr7L1Md_F292653326	NonProperStrand	1	chr7	92654540	92654597	LTR	RMER17A2	ERVK	chr7RMER17A292654306	ProperStrand	1	1	-inf
chr6	108293617	108293668	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr4	155555130	155555191	protein_coding	Agrn	intron	ENSMUSG00000041936	NonProperStrand	37	1	-9.4031
chr8	25841308	25841452	protein_coding	Adam5	intron	ENSMUSG00000031554	ProperStrand	56	chr8	121329693	121329710	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	1	-11.1959
chr13	60934377	60934431	LINE	L1_Mur3	L1	chr13L1_Mur360934000	NonProperStrand	4	chr14	118942863	118942911	protein_coding	Abcc4	intron	ENSMUSG00000032849	NonProperStrand	14	1	-20.8232
chr2	102829376	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr6	38332452	38332485	protein_coding	Ttc26	intron	ENSMUSG00000056832	NonProperStrand	9	1	-13.7663
chr10	81179566	81179610	LTR	ORR1E	MaLR	chr10ORR1E81179376	ProperStrand	38	chr6	4903720	4903754	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	NonProperStrand	11	1	-16.4424
chr8	104391192	104391273	LTR	RLTR18	ERVK	chr8RLTR18104390773	ProperStrand	1	chr2	155987038	155987103	protein_coding	Rbm39	intron	ENSMUSG00000027620	NonProperStrand	38	1	-inf
chr5	146260994	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	156561862	156561880	protein_coding	Negr1	intron	ENSMUSG00000040037	ProperStrand	24	1	-6.8742
chr1	120168044	120168134	LTR	MTD	MaLR	chr1MTD120167939	ProperStrand	1	chr1	120168512	120168612	LTR	RLTR20B2	ERVK	chr1RLTR20B2120168311	ProperStrand	1	1	-inf
chr17	39847558	39847729	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	79710790	79710878	SINE	RSINE1	B4	chr10RSINE179710712	NonProperStrand	3	2	-8.1061
chr1	151346917	151346954	LINE	L1Md_F2	L1	chr1L1Md_F2151346904	ProperStrand	1	chr5	122406053	122406100	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-inf
chr9	64175048	64175076	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr3	51669968	51669987	protein_coding	Maml3	intron	ENSMUSG00000061143	ProperStrand	37	1	-9.9174
chr9	37626226	37626348	LINE	Lx4B	L1	chr9Lx4B37626247	NonProperStrand	1	chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	1	-inf
chr6	4921898	4921988	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	NonProperStrand	11	chr6	4919189	4919289	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-12.5636
chr11	84841424	84841487	protein_coding	Usp32	intron	ENSMUSG00000000804	ProperStrand	59	chr13	24748761	24748791	protein_coding	Fam65b	intron	ENSMUSG00000036006	NonProperStrand	42	1	-12.7775
chr17	4082777	4082796	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chrX	38398956	38399088	SINE	MIR3	MIR	chrXMIR338398970	NonProperStrand	1	1	-inf
chr4	9597909	9597979	LTR	MTB	MaLR	chr4MTB9597587	NonProperStrand	1	chr4	9596415	9596475	protein_coding	Asph	utr5	ENSMUSG00000028207	ProperStrand	35	1	-inf
chr8	72739430	72739464	SINE	RSINE1	B4	chr8RSINE172739304	ProperStrand	2	chr7	127273053	127273149	protein_coding	Zp2	intron	ENSMUSG00000030911	ProperStrand	28	1	-21.0040
chr5	124531893	124531983	protein_coding	Abcb9	intron	ENSMUSG00000029408	NonProperStrand	7	chr2	49167918	49167962	protein_coding	Mbd5	intron	ENSMUSG00000036792	ProperStrand	50	1	-16.8347
chr5	146261191	146261267	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr1	163993667	163993790	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	1	-10.8682
chr16	20689514	20689549	protein_coding-noncoding	Eif4g1	utr5	ENSMUSG00000045983	ProperStrand	4	chr9	65201725	65201840	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-16.7526
chr10	75076316	75076354	protein_coding	Ggt5	intron	ENSMUSG00000006344	ProperStrand	42	chr4	34658853	34658966	protein_coding	1700003M02Rik	intron	ENSMUSG00000028294	ProperStrand	2	1	-21.0495
chr8	120746400	120746500	LINE	Lx4B	L1	chr8Lx4B120746050	NonProperStrand	1	chr8	120746876	120746966	Simple_repeat	(GGGGA)n	Simple_repeat	chr8(GGGGA)n120746890	NonProperStrand	1	1	-inf
chr5	146261080	146261111	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	109600994	109601015	protein_coding	Vmn2r13	intron	ENSMUSG00000091635	NonProperStrand	1	1	-inf
chr13	44869574	44869615	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	113455331	113455430	protein_coding	Fmn1	intron	ENSMUSG00000044042	ProperStrand	31	1	-5.7785
chr13	97190545	97190590	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr9	24467520	24467575	protein_coding	Dpy19l2	intron	ENSMUSG00000085576	ProperStrand	89	1	-4.3645
chr5	34286550	34286650	LINE	L1VL2	L1	chr5L1VL234285097	NonProperStrand	2	chr5	34286740	34286830	SINE	B2_Mm1t	B2	chr5B2_Mm1t34286745	NonProperStrand	2	2	-inf
chr7	123728307	123728397	SINE	B2_Mm1a	B2	chr7B2_Mm1a123728237	NonProperStrand	1	chr12	89638623	89638723	protein_coding	Adck1	intron	ENSMUSG00000021044	NonProperStrand	4	1	-inf
chr1	105879081	105879171	LINE	Lx8	L1	chr1Lx8105878080	ProperStrand	1	chr1	105879468	105879568	LINE	Lx9	L1	chr1Lx9105879230	ProperStrand	1	1	-inf
chr14	120284686	120284783	LTR	MTB_Mm	MaLR	chr14MTB_Mm120284600	NonProperStrand	6	chr17	57025524	57025574	protein_coding	1700061G19Rik	intron	ENSMUSG00000024209	NonProperStrand	83	4	-inf
chr4	103138564	103138666	lincRNA	Gm12718	intron	ENSMUSG00000086136	ProperStrand	37	chr12	41409745	41409790	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-9.6127
chrX	139862879	139862979	LINE	L1M5	L1	chrXL1M5139862826	ProperStrand	1	chrX	139862713	139862803	LTR	MLT1C	MaLR	chrXMLT1C139862406	ProperStrand	1	1	-inf
chr9	108335151	108336707	SINE	B1_Mur1	Alu	chr9B1_Mur1108336560	NonProperStrand	7	chr9	108336718	108336869	SINE	B2_Mm2	B2	chr9B2_Mm2108336708	ProperStrand	10	4	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr13	12401547	12402753	protein_coding	Actn2	intron	ENSMUSG00000052374	NonProperStrand	37	1	-6.9295
chr9	81874563	81874653	protein_coding	Mei4	intron	ENSMUSG00000043289	ProperStrand	34	chr11	97740830	97740930	protein_coding	Fbxo47	utr5	ENSMUSG00000070336	ProperStrand	56	1	-13.3095
chr12	61444113	61444213	LTR	MT2A	ERVL	chr12MT2A61444080	NonProperStrand	1	chr12	61444382	61444472	LTR	MT2A	ERVL	chr12MT2A61444284	NonProperStrand	1	1	-inf
chr3	34747420	34747520	LTR	IAPEz-int	ERVK	chr3IAPEz-int34745703	ProperStrand	3	chr12	100129413	100130427	protein_coding	Eml5	intron	ENSMUSG00000051166	ProperStrand	43	3	-inf
chrX	103471830	103471915	LINE	L1Md_F2	L1	chrXL1Md_F2103469145	NonProperStrand	25	chrX	103450428	103450485	protein_coding	Fnd3c2	intron	ENSMUSG00000073012	NonProperStrand	28	1	-15.3497
chr11	30867494	30867514	protein_coding	Asb3	intron	ENSMUSG00000020305	ProperStrand	38	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.8763
chr11	100429874	100431101	protein_coding-noncoding	Ttc25	utr5	ENSMUSG00000006784	NonProperStrand	2	chr11	100431088	100431178	protein_coding	Ttc25	intron	ENSMUSG00000006784	NonProperStrand	9	1	-inf
chr7	56094932	56094994	protein_coding	Csrp3	intron	ENSMUSG00000030470	NonProperStrand	22	chr11	29708117	29708163	protein_coding	Eml6	intron	ENSMUSG00000044072	NonProperStrand	99	1	-13.0497
chr1	19982748	19982838	LINE	L1_Mus1	L1	chr1L1_Mus119982093	NonProperStrand	1	chr1	19983113	19983213	LINE	L1_Mus1	L1	chr1L1_Mus119983048	NonProperStrand	1	1	-inf
chr12	80227104	80227194	LTR	MERVL-int	ERVL	chr12MERVL-int80224802	ProperStrand	30	chr13	112578208	112578308	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-5.5489
chr11	107060485	107060548	Satellite	SYNREP_MM	Satellite	chr11SYNREP_MM107059714	ProperStrand	5	chr11	107095830	107095872	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	2	-inf
chr19	29616680	29616784	protein_coding	C030046E11Rik	intron	ENSMUSG00000038658	ProperStrand	14	chr19	37269390	37269428	protein_coding	Cpeb3	intron	ENSMUSG00000039652	ProperStrand	70	1	-14.6744
chr1	149176449	149176549	LINE	Lx3_Mus	L1	chr1Lx3_Mus149176391	ProperStrand	1	chr1	149176333	149176423	LINE	Lx5	L1	chr1Lx5149176166	NonProperStrand	1	1	-inf
chr15	94957386	94957441	protein_coding	Nell2	intron	ENSMUSG00000022454	NonProperStrand	21	chr5	135884133	135884181	protein_coding	Hip1	utr3	ENSMUSG00000039959	ProperStrand	226	2	-17.9548
chr5	146261170	146261228	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	30115227	30115308	protein_coding	Spnb2	intron	ENSMUSG00000020315	ProperStrand	88	1	-4.3276
chr4	123374420	123374520	LINE	L1M5	L1	chr4L1M5123374259	ProperStrand	4	chr4	123374518	123374608	SINE	B1_Mus1	Alu	chr4B1_Mus1123374507	ProperStrand	1	1	-inf
chr5	47620024	47620047	LINE	L1M2	L1	chr5L1M247619738	ProperStrand	3	chr17	39847659	39847715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr10	86340257	86340369	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	81	chr8	125491492	125491525	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-7.4437
chr2	29130278	29130349	DNA	MER63B	AcHobo	chr2MER63B29130165	NonProperStrand	1	chr2	29130348	29133967	LINE	L2a	L2	chr2L2a29133870	ProperStrand	1	1	-inf
chr1	40326876	40326892	protein_coding	Il1r1	intron	ENSMUSG00000026072	NonProperStrand	1	chr10	40439782	40439866	protein_coding	9030224M15Rik	intron	ENSMUSG00000045555	ProperStrand	68	1	-inf
chr12	54092381	54092444	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	chr5	113163266	113163319	protein_coding	Myo18b	intron	ENSMUSG00000072720	ProperStrand	234	1	-6.9162
chr18	35557091	35557228	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-5.3380
chr1	13080184	13080276	LTR	MTC	MaLR	chr1MTC13080157	NonProperStrand	1	chr1	13080287	13080387	SINE	B2_Mm2	B2	chr1B2_Mm213080292	ProperStrand	1	1	-inf
chr2	167065003	167065079	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr4	53860704	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-8.8255
chr11	12399265	12399365	LTR	RMER17B	ERVK	chr11RMER17B12399248	NonProperStrand	3	chr11	12399377	12399467	Simple_repeat	(GAAA)n	Simple_repeat	chr11(GAAA)n12399396	NonProperStrand	2	2	-inf
chr8	95865179	95865213	LINE	Lx5	L1	chr8Lx595864721	NonProperStrand	11	chr17	39843762	39843827	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-6.2585
chr2	32239018	32239118	SINE	B1F2	Alu	chr2B1F232238991	ProperStrand	1	chr2	32238913	32239003	SINE	B3	B2	chr2B332238778	ProperStrand	1	1	-inf
chr3	142303050	142303089	LTR	MTEa	MaLR	chr3MTEa142302852	NonProperStrand	1	chr14	100283686	100283774	protein_coding	Klf12	intron	ENSMUSG00000072294	ProperStrand	41	1	-inf
chr1	152019653	152019671	LINE	Lx4A	L1	chr1Lx4A152018773	NonProperStrand	2	chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39847733	39847833	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	11576524	11576614	lincRNA	Gm11999	intron	ENSMUSG00000085652	ProperStrand	1	1	-inf
chr12	78350927	78350991	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr2	68900772	68900847	protein_coding	Lass6	intron	ENSMUSG00000027035	ProperStrand	71	1	-5.5661
chr3	80007272	80007362	LINE	Lx3_Mus	L1	chr3Lx3_Mus80006457	NonProperStrand	1	chr3	80007705	80007805	LINE	Lx3_Mus	L1	chr3Lx3_Mus80007392	ProperStrand	1	1	-inf
chr5	34899876	34903247	protein_coding-noncoding	Sh3bp2	utr5	ENSMUSG00000054520	ProperStrand	2	chr5	34903355	34905369	protein_coding	Sh3bp2	utr3	ENSMUSG00000054520	ProperStrand	25	2	-inf
chr7	5007624	5007687	lincRNA	Gm15510	intron	ENSMUSG00000086604	ProperStrand	17	chr12	78350926	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-8.4257
chr17	47171281	47171372	LINE	HAL1	L1	chr17HAL147171193	NonProperStrand	2	chr17	47171458	47171558	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n47171473	ProperStrand	2	2	-inf
chr9	123462081	123462128	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	73132102	73214131	protein_coding	Ssbp4	utr5	ENSMUSG00000070003	ProperStrand	17	1	-3.3592
chr13	51597077	51597149	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	33	chr18	10151079	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-14.2688
chr7	34985748	34985828	LTR	RLTR16	ERVK	chr7RLTR1634985551	NonProperStrand	3	chr7	34978717	34978787	protein_coding	Pdcd2l	intron	ENSMUSG00000002635	NonProperStrand	16	1	-inf
chr17	32853599	32853656	LTR	IAPLTR4_I	ERVK	chr17IAPLTR4_I32853442	NonProperStrand	1	chrX	48273251	48273322	protein_coding	Frmd7	intron	ENSMUSG00000036131	NonProperStrand	47	1	-inf
chr7	63914875	63914975	Other	RMER1A	Other	chr7RMER1A63914203	ProperStrand	9	chr7	63915005	63915095	Other	RMER1B	Other	chr7RMER1B63914988	ProperStrand	4	3	-inf
chr4	115811453	115811487	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	chr2	39000153	39000267	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	1	-12.4733
chr17	39846415	39846442	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	110379556	110379582	SINE	PB1D7	Alu	chr8PB1D7110379495	ProperStrand	1	1	-inf
chr7	80186943	80187023	LINE	Lx	L1	chr7Lx80186743	NonProperStrand	2	chr17	39847844	39847893	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr13	97190562	97190608	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr4	32843730	32843840	protein_coding	Mdn1	intron	ENSMUSG00000058006	NonProperStrand	27	1	-6.6986
chr4	80010707	80010797	LINE	Lx9	L1	chr4Lx980010634	NonProperStrand	1	chr4	80010445	80010545	LTR	MTA_Mm	MaLR	chr4MTA_Mm80010141	NonProperStrand	1	1	-inf
chr8	126944846	126944899	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	chr1	89777104	89777147	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-8.1983
chrX	49493467	49493483	protein_coding	Gpc4	intron	ENSMUSG00000031119	ProperStrand	4	chrX	7736696	7736772	protein_coding	Tbc1d25	intron	ENSMUSG00000039201	ProperStrand	18	1	-20.2607
chr15	34440789	34440829	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	chr2	27326034	27326138	protein_coding	Brd3	intron	ENSMUSG00000026918	ProperStrand	76	1	-12.5795
chr9	44637260	44637309	protein_coding	Mll1	exon	ENSMUSG00000002028	NonProperStrand	44	chr2	73519403	73519442	protein_coding	Chn1	intron	ENSMUSG00000056486	ProperStrand	42	1	-13.3695
chr17	39847179	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	62032335	62032457	Unknown	MurSatRep1	Unknown	chr13MurSatRep162031819	ProperStrand	2	1	-6.5615
chr4	150517257	150517285	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr6	83053661	83053731	protein_coding	Ccdc142	intron	ENSMUSG00000079511	NonProperStrand	4	1	-13.8971
chr9	123461802	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr5	36814061	36814177	protein_coding	Grpel1	utr3	ENSMUSG00000029198	NonProperStrand	8	1	-4.8360
chr6	135012303	135015202	SINE	B1_Mus1	Alu	chr6B1_Mus1135012241	ProperStrand	4	chr6	135011641	135012304	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n135011645	ProperStrand	3	3	-inf
chr1	37076343	37076443	DNA	RCHARR1	MER1_type	chr1RCHARR137075875	NonProperStrand	1	chr1	37076825	37076915	DNA	RCHARR1	MER1_type	chr1RCHARR137076682	NonProperStrand	1	1	-inf
chr9	19657778	19657868	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr14	123804515	123804615	protein_coding	Nalcn	intron	ENSMUSG00000000197	ProperStrand	4	1	-16.4884
chr4	43538730	43538777	DNA	Charlie1a	MER1_type	chr4Charlie1a43538734	ProperStrand	1	chr8	18707535	18707611	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-inf
chr6	124741224	124741282	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr11	54912569	54912669	protein_coding	Gm2a	intron	ENSMUSG00000000594	NonProperStrand	51	1	-15.6502
chr11	75764953	75765007	SINE	B3	B2	chr11B375764946	NonProperStrand	2	chr16	36070422	36070472	protein_coding	Fam162a	intron	ENSMUSG00000003955	ProperStrand	95	1	-18.6969
chr13	40909476	40909522	LINE	L1Md_F2	L1	chr13L1Md_F240909461	ProperStrand	1	chr13	40910505	40910603	LINE	L1Md_F2	L1	chr13L1Md_F240909903	ProperStrand	1	1	-inf
chr10	81186693	81186793	LTR	MurERV4-int	ERVK	chr10MurERV4-int81186250	ProperStrand	7	chr4	129309687	129309750	protein_coding	Txlna	intron	ENSMUSG00000053841	ProperStrand	9	3	-inf
chr13	114137744	114137863	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	chr4	116996573	116996589	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-8.3886
chr4	43492783	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr10	83366610	83366666	Simple_repeat	(TCTCC)n	Simple_repeat	chr10(TCTCC)n83366522	ProperStrand	4	1	-12.7543
chr6	133896566	133896656	LINE	L1Md_F3	L1	chr6L1Md_F3133892978	ProperStrand	1	chr7	47188497	47188597	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	1	-inf
chr17	39846291	39847241	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	121422845	121548278	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	13	-6.9782
chr13	21907106	21907192	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr6	134108968	134109047	protein_coding	Etv6	intron	ENSMUSG00000030199	ProperStrand	187	1	-11.8693
chr3	19245360	19245461	LINE	Lx5	L1	chr3Lx519245271	ProperStrand	1	chr3	19245514	19245604	LINE	Lx5	L1	chr3Lx519245506	ProperStrand	1	1	-inf
chr12	81480994	81532754	protein_coding	Dcaf5	intron	ENSMUSG00000049106	ProperStrand	69	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-8.6216
chr4	123382101	123382186	LINE	L1MDa	L1	chr4L1MDa123382099	ProperStrand	1	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39846819	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	149173490	149173573	SINE	ID_B1	B4	chr6ID_B1149173457	NonProperStrand	1	1	-inf
chr8	124925822	124925928	protein_coding	Zc3h18	intron	ENSMUSG00000017478	NonProperStrand	139	chr5	114851980	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-7.6255
chr13	55666330	55669722	protein_coding	Fam193b	intron	ENSMUSG00000021495	NonProperStrand	28	chr1	186750081	186750135	protein_coding	Mark1	intron	ENSMUSG00000026620	NonProperStrand	4	1	-23.3794
chr5	129559490	129559580	SINE	B1F2	Alu	chr5B1F2129559486	NonProperStrand	4	chr5	129559659	129559759	SINE	B1_Mur1	Alu	chr5B1_Mur1129559650	NonProperStrand	4	4	-inf
chr17	39846451	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	34952358	34952375	processed_transcript	C4a	.	ENSMUSG00000015451	NonProperStrand	1	1	-inf
chr11	61829435	61830590	protein_coding	Specc1	intron	ENSMUSG00000042331	ProperStrand	27	chr7	127229080	127229106	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	147	1	-11.8387
chr7	73747230	73747257	DNA	MER20B	MER1_type	chr7MER20B73747178	ProperStrand	1	chr17	39846461	39846498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	105875770	105875805	LINE	MusHAL1	L1	chrXMusHAL1105875349	NonProperStrand	5	chr10	86692269	86692386	protein_coding	1700113H08Rik	intron	ENSMUSG00000047129	NonProperStrand	35	1	-18.2660
chr2	5379289	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr3	105969092	105969131	protein_coding	Chi3l3	intron	ENSMUSG00000040809	NonProperStrand	47	1	-5.0193
chr3	79500250	79500289	protein_coding	Rxfp1	intron	ENSMUSG00000034009	ProperStrand	199	chr1	118459135	118459196	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	NonProperStrand	63	1	-9.5204
chr6	29425144	29425221	protein_coding	Kcp	intron	ENSMUSG00000059022	NonProperStrand	14	chr6	29422339	29422419	protein_coding	Gm9047	intron	ENSMUSG00000090685	ProperStrand	9	1	-18.9138
chr9	64224457	64224547	LINE	L2c	L2	chr9L2c64224473	ProperStrand	2	chr6	4951361	4951461	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-16.5748
chr2	5680512	5680580	SINE	ID_B1	B4	chr2ID_B15680475	ProperStrand	1	chr1	12811192	12811247	protein_coding	Sulf1	intron	ENSMUSG00000016918	ProperStrand	57	1	-inf
chr4	63465838	63465872	LINE	L1Md_F3	L1	chr4L1Md_F363465680	NonProperStrand	1	chr4	63465871	63465956	LINE	L1_Mm	L1	chr4L1_Mm63465877	ProperStrand	1	1	-inf
chr2	170554209	170554299	LTR	ORR1A2	MaLR	chr2ORR1A2170554042	NonProperStrand	1	chr2	170553871	170553971	SINE	ID_B1	B4	chr2ID_B1170553874	NonProperStrand	1	1	-inf
chr9	90095186	90097381	protein_coding	Adamts7	intron	ENSMUSG00000032363	NonProperStrand	9	chr9	90097390	90100517	protein_coding	Tbc1d2b	intron	ENSMUSG00000037410	ProperStrand	44	3	-inf
chr10	23601902	23601992	LTR	MT2A	ERVL	chr10MT2A23601442	ProperStrand	1	chr10	23602128	23602228	LTR	ORR1A4	MaLR	chr10ORR1A423602105	NonProperStrand	1	1	-inf
chr16	89999983	90000029	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr12	54696816	54696852	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-4.7201
chr1	66421701	66421718	protein_coding	Mtap2	intron	ENSMUSG00000015222	NonProperStrand	6	chr12	79611830	79611866	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-11.6583
chr7	135553583	135553683	protein_coding	Rgs10	intron	ENSMUSG00000030844	NonProperStrand	6	chr7	135554200	135554290	sense_intronic	Gm15503	.	ENSMUSG00000084964	NonProperStrand	2	2	-inf
chr17	39846537	39846558	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	8736213	8736244	Simple_repeat	(TTTC)n	Simple_repeat	chr19(TTTC)n8736181	ProperStrand	1	1	-inf
chr9	110205001	110205101	LTR	LTR65	ERV1	chr9LTR65110205005	ProperStrand	4	chr9	110204899	110204989	SINE	B1_Mus2	Alu	chr9B1_Mus2110204857	NonProperStrand	4	4	-inf
chr1	156439617	156439707	protein_coding	Cacna1e	intron	ENSMUSG00000004110	ProperStrand	66	chr3	138143173	138143273	protein_coding	Metap1	intron	ENSMUSG00000005813	ProperStrand	2	1	-19.0429
chr15	80078499	80078555	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr16	85173615	85173661	protein_coding	App	intron	ENSMUSG00000022892	ProperStrand	60	1	-8.0880
chr19	4762387	4762452	protein_coding	Rbm4b	exon	ENSMUSG00000033760	NonProperStrand	33	chr17	21871407	21871435	protein_coding	Zfp229	intron	ENSMUSG00000061544	NonProperStrand	9	1	-17.1411
chr6	112847071	112847088	protein_coding	Srgap3	intron	ENSMUSG00000030257	NonProperStrand	8	chr11	98249959	98250087	protein_coding	Pgap3	utr3	ENSMUSG00000038208	NonProperStrand	11	1	-20.8373
chr19	38067040	38067093	protein_coding	Myof	intron	ENSMUSG00000048612	NonProperStrand	42	chr16	11370862	11370906	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	1	-12.4325
chr8	61531953	61532010	LINE	L1Md_A	L1	chr8L1Md_A61531010	NonProperStrand	1	chr17	39847440	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	111114517	111114614	LINE	L1Md_T	L1	chr7L1Md_T111109426	ProperStrand	2	chr7	111119059	111119109	LINE	L1VL1	L1	chr7L1VL1111117585	ProperStrand	2	1	-19.8939
chr5	144560696	144560796	LTR	MTD	MaLR	chr5MTD144560551	NonProperStrand	1	chr5	144560835	144560925	SINE	B3	B2	chr5B3144560839	NonProperStrand	1	1	-inf
chr10	78306122	78306215	LINE	L1_Mus3	L1	chr10L1_Mus378305937	NonProperStrand	4	chr19	5851265	5851283	antisense	Gm9783	.	ENSMUSG00000043488	ProperStrand	1	1	-inf
chr17	39847354	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	102301465	102301535	LTR	RLTR28	ERVL	chr2RLTR28102301145	NonProperStrand	1	1	-inf
chr13	21779915	21780014	LINE	L1Md_T	L1	chr13L1Md_T21779280	ProperStrand	36	chr8	85991416	85991455	LINE	Lx	L1	chr8Lx85990121	NonProperStrand	3	1	-19.8945
chr17	39848498	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	136589083	136589127	SINE	B3A	B2	chr1B3A136589058	NonProperStrand	2	1	-8.7208
chr5	146261281	146261335	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr1	89544295	89544329	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-3.9992
chrX	112313036	112313093	LINE	L1_Mus1	L1	chrXL1_Mus1112312991	ProperStrand	2	chr3	135220488	135220583	protein_coding	Manba	intron	ENSMUSG00000028164	ProperStrand	20	2	-inf
chr17	39846003	39846082	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr1	159736408	159736425	SINE	MIRb	MIR	chr1MIRb159736337	NonProperStrand	1	1	-inf
chr17	39847179	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	30657448	30657464	protein_coding	Ccdc164	exon	ENSMUSG00000073102	NonProperStrand	4	1	-4.8204
chr14	69781375	69781426	LINE	Lx	L1	chr14Lx69781260	NonProperStrand	1	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-inf
chr17	39847020	39847061	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	5061279	5061371	lincRNA	Gm16934	intron	ENSMUSG00000087583	ProperStrand	3	1	-4.3017
chr15	85177754	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr6	115807974	115808088	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-8.1276
chr9	17987798	17987829	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr2	181187730	181187823	protein_coding	Zbtb46	intron	ENSMUSG00000027583	NonProperStrand	19	1	-13.4750
chr5	136522965	136523065	SINE	RSINE1	B4	chr5RSINE1136522978	NonProperStrand	1	chr5	136523072	136523162	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n136523086	NonProperStrand	4	1	-inf
chr16	24984416	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr9	114513356	114513451	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-5.9604
chr17	39847856	39848044	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	8725105	8725131	SINE	B1_Mur2	Alu	chr19B1_Mur28725020	ProperStrand	2	2	-inf
chr17	30838065	30838098	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	chr5	107903736	107903833	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-9.5534
chr13	74377135	74377241	protein_coding	Ahrr	intron	ENSMUSG00000021575	ProperStrand	6	chr9	123461801	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr11	120186942	120186959	LTR	IAPEz-int	ERVK	chr11IAPEz-int120182724	ProperStrand	1	chr11	32393708	32393784	protein_coding	Ubtd2	intron	ENSMUSG00000044949	ProperStrand	41	1	-inf
chr10	86407375	86407420	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	81	chr16	23110453	23110510	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	10	1	-15.0826
chr19	7476267	7476357	SINE	B1_Mus2	Alu	chr19B1_Mus27476242	NonProperStrand	2	chr19	7476115	7476215	SINE	B3	B2	chr19B37476023	NonProperStrand	1	1	-inf
chr17	39846509	39846716	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	mmu-miR-1912-5p	0	17	miRNA	mmu-miR-1912-5p	.	mmu-miR-1912-5p	NonProperStrand	5	2	-5.8332
chr1	118946561	118946696	LINE	L1_Mm	L1	chr1L1_Mm118946403	ProperStrand	2	chr4	149120031	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	2	-inf
chr6	143206182	143206248	lincRNA	D6Ertd474e	intron	ENSMUSG00000072679	ProperStrand	65	chr15	99997605	99997657	protein_coding	Dip2b	intron	ENSMUSG00000023026	ProperStrand	60	1	-11.8618
chr5	24384765	24384783	protein_coding	Prkag2	intron	ENSMUSG00000028944	NonProperStrand	128	chr16	32377887	32378020	protein_coding	Ubxn7	intron	ENSMUSG00000053774	ProperStrand	53	1	-10.7507
chr12	86491144	86491264	protein_coding	Rps6kl1	intron	ENSMUSG00000019235	ProperStrand	2	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-16.0837
chr12	108932869	108932961	LTR	MLT1C	MaLR	chr12MLT1C108932839	ProperStrand	8	chr19	5798570	5798602	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-8.4920
chr17	39846048	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr14	56791075	56791114	protein_coding	Gzmn	intron	ENSMUSG00000015443	ProperStrand	7	1	-6.0522
chr17	39847362	39847915	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	76686821	76748098	protein_coding	Ttn	intron	ENSMUSG00000051747	NonProperStrand	37	5	-3.3483
chr6	89317822	89317839	LINE	L1MDa	L1	chr6L1MDa89317724	ProperStrand	3	chr2	5379274	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr9	58619571	58619629	SINE	B2_Mm2	B2	chr9B2_Mm258619565	NonProperStrand	1	chr9	58583097	58583171	protein_coding	2410076I21Rik	intron	ENSMUSG00000074269	NonProperStrand	13	1	-inf
chr6	94607622	94607707	protein_coding	Lrig1	intron	ENSMUSG00000030029	NonProperStrand	43	chrX	150482305	150482361	protein_coding	Gm10057	intron	ENSMUSG00000058986	ProperStrand	1	1	-inf
chr17	39846743	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	35253315	35253404	LTR	LTR16C	ERVL	chr18LTR16C35253166	NonProperStrand	1	1	-inf
chr19	6984727	6984817	protein_coding-noncoding	Trmt112	utr5	ENSMUSG00000038812	NonProperStrand	2	chr19	6984629	6984729	protein_coding	Trmt112	utr5	ENSMUSG00000038812	NonProperStrand	2	2	-inf
chr17	39846842	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	53261618	53261719	SINE	B4A	B4	chr11B4A53261632	NonProperStrand	4	2	-6.6967
chr11	38189170	38189260	LINE	L1M4	L1	chr11L1M438188986	ProperStrand	1	chr11	38189467	38189567	SINE	B1_Mur2	Alu	chr11B1_Mur238189423	ProperStrand	1	1	-inf
chr1	118682823	118682863	LINE	L1_Mur1	L1	chr1L1_Mur1118682021	ProperStrand	19	chr1	118681851	118681916	LINE	L1_Mus1	L1	chr1L1_Mus1118680975	NonProperStrand	9	1	-18.1720
chr16	17082070	17082174	protein_coding	Ypel1	intron	ENSMUSG00000022773	ProperStrand	15	chr9	123461876	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr17	24100904	24101687	LTR	ORR1A2	MaLR	chr17ORR1A224101471	ProperStrand	2	chr17	24098150	24100891	SINE	RSINE1	B4	chr17RSINE124099894	NonProperStrand	1	1	-inf
chr6	67277878	67277908	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr10	84638035	84638161	protein_coding	Cry1	intron	ENSMUSG00000020038	NonProperStrand	8	1	-13.6993
chr11	6508253	6508353	SINE	B1_Mm	Alu	chr11B1_Mm6508214	NonProperStrand	1	chr11	6508070	6508160	SINE	B2_Mm1a	B2	chr11B2_Mm1a6507987	NonProperStrand	1	1	-inf
chr6	35287463	35287550	LTR	MTC	MaLR	chr6MTC35287289	ProperStrand	2	chr6	35272106	35272153	protein_coding	Fam180a	intron	ENSMUSG00000047420	NonProperStrand	4	1	-22.1285
chr13	44869896	44869976	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr5	34350028	34350804	protein_coding	Poln	utr3	ENSMUSG00000045102	NonProperStrand	133	1	-3.0173
chr14	99048413	99048503	SINE	B4A	B4	chr14B4A99048302	ProperStrand	3	chr14	99048501	99048601	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n99048526	ProperStrand	2	2	-inf
chr1	185394391	185394450	LTR	IAPEz-int	ERVK	chr1IAPEz-int185389206	ProperStrand	8	chr2	5379307	5379356	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.6062
chr14	47387893	47387931	protein_coding	Cdkn3	intron	ENSMUSG00000037628	ProperStrand	2	chr12	21411428	21411526	protein_coding	Ywhaq	intron	ENSMUSG00000076432	ProperStrand	53	1	-19.2441
chr19	36879404	36880514	LINE	L2	L2	chr19L236879149	ProperStrand	6	chr7	133068967	133069026	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-9.8863
chr7	24754388	24754558	LTR	MuRRS4-int	ERV1	chr7MuRRS4-int24752684	ProperStrand	1	chr5	97183357	97183375	protein_coding	Fras1	intron	ENSMUSG00000034687	ProperStrand	39	1	-inf
chr17	15934164	15934264	LTR	MLT1G3	MaLR	chr17MLT1G315934056	ProperStrand	1	chr1	68014257	68014347	LTR	RLTR13D1	ERVK	chr1RLTR13D168013784	ProperStrand	1	1	-inf
chr4	151817412	151817491	protein_coding	Kcnab2	intron	ENSMUSG00000028931	ProperStrand	216	chr6	86376607	86378789	protein_coding	Tia1	intron	ENSMUSG00000071337	ProperStrand	14	1	-12.4164
chr16	3909153	3909243	protein_coding-noncoding	Cluap1	utr5	ENSMUSG00000014232	ProperStrand	2	chr16	3909270	3909370	protein_coding	RP23-312H15.9	intron	ENSMUSG00000093575	ProperStrand	17	2	-inf
chr12	18038200	18038281	Simple_repeat	(TCTA)n	Simple_repeat	chr12(TCTA)n18038005	ProperStrand	1	chr4	44916605	44916627	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-inf
chr17	39845404	39845503	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr16	18945451	18945473	protein_coding	Hira	intron	ENSMUSG00000022702	NonProperStrand	4	1	-7.5930
chr13	63310734	63310818	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	NonProperStrand	40	chr6	140523009	140523064	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	1	-10.2993
chr3	144559355	144559472	LINE	L1_Mus1	L1	chr3L1_Mus1144559282	NonProperStrand	4	chr17	39847621	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr7	25709942	25709995	protein_coding-noncoding	Arhgef1	utr5	ENSMUSG00000040940	ProperStrand	3	chr9	123462091	123462136	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr7	5409506	5409606	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	chrX	139175466	139175556	protein_coding	Tmem164	intron	ENSMUSG00000047045	NonProperStrand	26	2	-inf
chr5	122498441	122498495	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	chr10	69991415	69991453	protein_coding	Fam13c	intron	ENSMUSG00000043259	ProperStrand	75	1	-9.8031
chr13	9159875	9159896	protein_coding	Larp4b	intron	ENSMUSG00000033499	ProperStrand	85	chr15	5116674	5117323	protein_coding	Prkaa1	intron	ENSMUSG00000050697	ProperStrand	28	1	-12.8638
chr17	39847205	39847270	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	104559695	104559713	SINE	ID_B1	B4	chr2ID_B1104559567	ProperStrand	2	1	-6.5615
chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	65107780	65107868	Other	RMER1B	Other	chr6RMER1B65107055	NonProperStrand	1	1	-inf
chr18	37765984	37766000	LTR	RMER20B	ERVK	chr18RMER20B37765907	ProperStrand	1	chr5	35849274	35849393	protein_coding	Cpz	intron	ENSMUSG00000036596	NonProperStrand	14	1	-inf
chr9	55011435	55011452	protein_coding	Ube2q2	intron	ENSMUSG00000032307	ProperStrand	2	chr7	112794863	112794937	protein_coding	Fxc1	intron	ENSMUSG00000089847	ProperStrand	81	1	-18.6285
chr5	33487925	33488015	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	chr5	23495113	23495213	protein_coding	Fam126a	intron	ENSMUSG00000028995	NonProperStrand	11	1	-11.0821
chr14	120311456	120311501	LINE	L1MB8	L1	chr14L1MB8120311223	NonProperStrand	1	chr14	120311848	120311940	Simple_repeat	(TG)n	Simple_repeat	chr14(TG)n120311609	ProperStrand	1	1	-inf
chr9	123529408	123529439	protein_coding	Slc6a20b	intron	ENSMUSG00000025243	ProperStrand	3	chr5	114852004	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-15.6664
chr13	97190550	97190575	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr13	34265097	34265219	protein_coding	Psmg4	intron	ENSMUSG00000071451	NonProperStrand	3	1	-11.4304
chr12	59554344	59554434	LINE	Lx4B	L1	chr12Lx4B59554278	NonProperStrand	1	chr12	59554075	59554175	LTR	RLTR15	ERVK	chr12RLTR1559553949	NonProperStrand	1	1	-inf
chr5	120761262	120761589	LINE	L1MC3	L1	chr5L1MC3120761364	ProperStrand	1	chr17	39843362	39843478	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr11	51602600	51602661	protein_coding	Sar1b	intron	ENSMUSG00000020386	NonProperStrand	109	chr8	127449924	127449995	protein_coding	Egln1	intron	ENSMUSG00000031987	NonProperStrand	13	1	-13.9449
chr8	107351543	107355548	LTR	MurERV4-int	ERVK	chr8MurERV4-int107350781	ProperStrand	2	chr8	107355552	107355772	protein_coding	Ces2b	utr5	ENSMUSG00000050097	ProperStrand	2	1	-19.8939
chr17	39847215	39847265	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	125162048	125162224	SINE	PB1	Alu	chr6PB1125162033	ProperStrand	1	1	-inf
chr17	46234667	46234701	LINE	L1MB3	L1	chr17L1MB346234454	ProperStrand	1	chr17	39847726	39847750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	84831364	84831454	protein_coding-noncoding	Atp5j	utr3	ENSMUSG00000022890	ProperStrand	2	chr16	84831262	84831362	protein_coding	Atp5j	intron	ENSMUSG00000022890	ProperStrand	1	1	-inf
chr1	152050979	152051030	LINE	Lx6	L1	chr1Lx6152050685	ProperStrand	3	chr1	152051114	152051178	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n152051113	NonProperStrand	1	1	-inf
chr12	82294567	82294644	LINE	L1MA9	L1	chr12L1MA982294417	ProperStrand	1	chr12	82294354	82294421	LTR	MTE2a	MaLR	chr12MTE2a82294027	ProperStrand	1	1	-inf
chr4	106969300	106969374	protein_coding	Dio1	intron	ENSMUSG00000034785	NonProperStrand	50	chr4	106932966	106932995	protein_coding	Hspb11	intron	ENSMUSG00000063172	ProperStrand	93	1	-11.5089
chr10	77078321	77079285	protein_coding-noncoding	Sumo3	utr5	ENSMUSG00000020265	NonProperStrand	4	chr10	77078846	77080763	protein_coding	Sumo3	utr3	ENSMUSG00000020265	NonProperStrand	91	4	-inf
chr17	39846405	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	85239863	85239921	LTR	RMER19C	ERVK	chr17RMER19C85239501	ProperStrand	1	1	-inf
chr8	114788617	114788707	LINE	L1_Mus4	L1	chr8L1_Mus4114788395	NonProperStrand	2	chr8	114788715	114788815	LINE	L1_Mus4	L1	chr8L1_Mus4114788395	ProperStrand	2	2	-inf
chr12	69361178	69361230	Low_complexity	AT_rich	Low_complexity	chr12AT_rich69361192	NonProperStrand	1	chr1	87428648	87428705	pseudogene	Gm7592	.	ENSMUSG00000090186	ProperStrand	36	1	-inf
chr1	84742319	84743141	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr11	78322302	78322380	protein_coding	Tmem199	intron	ENSMUSG00000051232	NonProperStrand	4	1	-16.2794
chr2	162572107	162572207	LINE	Lx9	L1	chr2Lx9162571930	NonProperStrand	2	chr2	162572282	162572372	SINE	B4A	B4	chr2B4A162572224	NonProperStrand	2	2	-inf
chr13	77126635	77126657	protein_coding	Mctp1	intron	ENSMUSG00000021596	NonProperStrand	18	chr7	99441184	99441200	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-9.8581
chr10	67100001	67100059	LTR	MTC-int	MaLR	chr10MTC-int67099998	NonProperStrand	1	chr10	67100101	67100159	SINE	B1_Mur4	Alu	chr10B1_Mur467100117	NonProperStrand	1	1	-inf
chr6	3201507	3201533	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	30059827	30059843	SINE	B1_Mus2	Alu	chr5B1_Mus230059714	NonProperStrand	4	1	-8.3508
chr18	49862157	49862291	protein_coding	Dtwd2	intron	ENSMUSG00000024505	NonProperStrand	26	chr18	70625921	70625938	protein_coding	4930503L19Rik	intron	ENSMUSG00000044906	ProperStrand	1	1	-inf
chr13	21907167	21907193	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr12	87323058	87323090	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	132	1	-12.5677
chr8	106233431	106233523	LINE	Lx4A	L1	chr8Lx4A106233344	ProperStrand	1	chr4	43102548	43102575	protein_coding	Unc13b	intron	ENSMUSG00000028456	ProperStrand	85	1	-inf
chr6	71882555	71882693	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	chr8	26716220	26716237	protein_coding	Whsc1l1	intron	ENSMUSG00000054823	ProperStrand	5	1	-15.6767
chr8	71336952	71337042	protein_coding	Ints10	intron	ENSMUSG00000031864	ProperStrand	49	chr9	21079350	21079450	protein_coding	Kri1	intron	ENSMUSG00000035047	ProperStrand	44	2	-20.9592
chr14	99307990	99308108	SINE	B3	B2	chr14B399307962	ProperStrand	2	chr15	102347009	102347035	protein_coding	Map3k12	intron	ENSMUSG00000023050	ProperStrand	33	2	-inf
chr15	96413850	96413893	protein_coding	Slc38a1	intron	ENSMUSG00000023169	ProperStrand	51	chr4	84537160	84537193	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	1	-11.8746
chr11	100756962	100756978	protein_coding-noncoding	Stat3	utr3	ENSMUSG00000004040	ProperStrand	2	chr14	60733306	60733421	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	1	-17.0110
chr7	143293983	143294089	LTR	MTD	MaLR	chr7MTD143293887	ProperStrand	2	chr7	143294092	143294182	SINE	B4A	B4	chr7B4A143294110	ProperStrand	2	2	-inf
chr4	8868264	8868364	DNA	MER2	MER2_type	chr4MER28868201	ProperStrand	1	chr4	8868385	8868475	pseudogene	Rps18-ps2	.	ENSMUSG00000083786	NonProperStrand	1	1	-inf
chr4	125547148	125547187	LTR	MER21B	ERV1	chr4MER21B125546899	ProperStrand	1	chr4	125546389	125546461	SINE	MIR	MIR	chr4MIR125546315	NonProperStrand	1	1	-inf
chr18	77778887	77779131	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr7	133051598	133051692	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.1083
chr4	11179865	11179938	protein_coding	Ints8	intron	ENSMUSG00000040738	ProperStrand	18	chr11	23297571	23297654	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-12.5879
chr11	75733028	75751894	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	chr15	12842493	12846108	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	1	-9.8114
chr4	35206245	35206374	lincRNA	Gm12367	intron	ENSMUSG00000084828	NonProperStrand	3	chr9	123461882	123461904	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-12.1476
chr9	111114471	111114498	protein_coding	Lrrfip2	intron	ENSMUSG00000032497	NonProperStrand	3	chr19	4336586	4336664	protein_coding	Kdm2a	intron	ENSMUSG00000054611	ProperStrand	90	1	-17.5718
chr3	86139172	86139232	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.6475
chr3	94752862	94752962	LINE	L1M2	L1	chr3L1M294752846	ProperStrand	1	chr3	94753086	94753176	LINE	L1MA8	L1	chr3L1MA894752953	NonProperStrand	1	1	-inf
chr13	98728551	98728689	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr3	32510711	32510729	protein_coding	Gnb4	intron	ENSMUSG00000027669	ProperStrand	7	1	-14.7526
chrX	77762447	77762499	LINE	Lx6	L1	chrXLx677761684	NonProperStrand	2	chr8	124421965	124422070	protein_coding	Slc7a5	intron	ENSMUSG00000040010	ProperStrand	56	1	-19.4250
chr10	80037154	80037202	protein_coding	Klf16	intron	ENSMUSG00000035397	ProperStrand	49	chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.5173
chr5	115424223	115424323	antisense	Gm13824	.	ENSMUSG00000086054	ProperStrand	9	chr5	114883774	114883864	protein_coding	Mmab	intron	ENSMUSG00000029575	NonProperStrand	2	1	-20.8824
chr14	59363511	59363592	LTR	RMER21B	ERV1	chr14RMER21B59363331	NonProperStrand	1	chr11	33254236	33254283	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	92673835	92673916	protein_coding	Ppef2	intron	ENSMUSG00000029410	ProperStrand	3	1	-4.3512
chr17	39846053	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr15	102505017	102505109	SINE	B1_Mur2	Alu	chr15B1_Mur2102504993	NonProperStrand	2	2	-inf
chr17	35913263	35913355	lincRNA	4833427F10Rik	intron	ENSMUSG00000092171	NonProperStrand	10	chr9	118674951	118675009	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-9.6021
chr1	108969077	108969177	LINE	L1Md_F2	L1	chr1L1Md_F2108969096	ProperStrand	1	chr1	108968960	108969050	LINE	L1Md_F3	L1	chr1L1Md_F3108968889	ProperStrand	1	1	-inf
chr10	77505656	77505731	protein_coding	Aire	exon	ENSMUSG00000000731	ProperStrand	24	chr5	115490312	115490397	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-11.0077
chr17	39848247	39848385	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	107580745	107580761	protein_coding	Ces3a	intron	ENSMUSG00000069922	ProperStrand	1	1	-inf
chr14	45346769	45348617	LINE	L1_Mur1	L1	chr14L1_Mur145346470	NonProperStrand	3	chr14	45348632	45348661	LINE	L1_Mus4	L1	chr14L1_Mus445348156	ProperStrand	1	1	-inf
chr11	74499274	74499374	protein_coding-noncoding	Pafah1b1	utr3	ENSMUSG00000020745	ProperStrand	1	chr11	74499756	74499846	protein_coding	Pafah1b1	intron	ENSMUSG00000020745	ProperStrand	23	1	-inf
chr3	81116700	81116793	LINE	L1Md_A	L1	chr3L1Md_A81112589	NonProperStrand	2	chr17	39846673	39846706	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr15	78885020	78885110	protein_coding-noncoding	Ankrd54	utr3	ENSMUSG00000033055	NonProperStrand	3	chr15	78784040	78784140	protein_coding	Triobp	intron	ENSMUSG00000033088	NonProperStrand	10	1	-20.3377
chr11	61849609	61849637	protein_coding	Specc1	intron	ENSMUSG00000042331	NonProperStrand	50	chr6	124475675	124475782	protein_coding	C1rb	intron	ENSMUSG00000092005	ProperStrand	20	1	-14.6237
chr19	5797981	5798028	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr8	72566244	72566354	protein_coding	Mau2	intron	ENSMUSG00000031858	ProperStrand	21	1	-6.5006
chr10	25471633	25473124	Simple_repeat	(TC)n	Simple_repeat	chr10(TC)n25473037	ProperStrand	1	chr4	11265495	11265558	protein_coding	Esrp1	intron	ENSMUSG00000040728	ProperStrand	8	1	-inf
chr13	51674001	51676304	LTR	ORR1D-int	MaLR	chr13ORR1D-int51673976	NonProperStrand	1	chr17	39847634	39847658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	32106209	32106310	protein_coding	Pomt1	intron	ENSMUSG00000039254	ProperStrand	3	chr7	133086674	133086733	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-11.4919
chr17	39847079	39847169	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	22722281	22722381	LTR	RLTRETN_Mm	ERVK	chr17RLTRETN_Mm22722102	NonProperStrand	1	1	-inf
chr13	19237457	19237547	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	chr13	19237060	19237160	protein_coding	Amph	intron	ENSMUSG00000021314	ProperStrand	15	1	-16.3117
chr12	78350925	78351003	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr17	29043982	29044050	protein_coding	4930539E08Rik	intron	ENSMUSG00000048905	ProperStrand	2	1	-13.3250
chr4	136051428	136051528	protein_coding	Luzp1	intron	ENSMUSG00000001089	NonProperStrand	42	chr18	4657894	4657984	protein_coding	9430020K01Rik	intron	ENSMUSG00000033960	ProperStrand	14	1	-15.7125
chr14	50907892	50908008	LINE	Lx5	L1	chr14Lx550906743	NonProperStrand	2	chr17	39847880	39847897	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr10	12863361	12863451	LINE	L1MB3	L1	chr10L1MB312863175	NonProperStrand	3	chr10	12866180	12866280	LINE	L1MB3	L1	chr10L1MB312866059	NonProperStrand	3	3	-inf
chr5	138455886	138455986	LTR	MTD	MaLR	chr5MTD138455860	NonProperStrand	4	chr5	138454998	138455088	LTR	MuRRS4-int	ERV1	chr5MuRRS4-int138454928	NonProperStrand	4	4	-inf
chr5	60066619	60066719	LINE	Lx3C	L1	chr5Lx3C60066595	ProperStrand	1	chr5	60066321	60066411	LTR	MTA_Mm	MaLR	chr5MTA_Mm60066201	ProperStrand	1	1	-inf
chr10	95945269	95945359	LINE	Lx4B	L1	chr10Lx4B95945272	ProperStrand	1	chr2	11691090	11691190	protein_coding	Fbxo18	intron	ENSMUSG00000058594	ProperStrand	2	1	-inf
chr19	53200028	53200119	SINE	MIRb	MIR	chr19MIRb53200012	NonProperStrand	1	chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	1	-inf
chr14	30571043	30571202	LTR	MLT1E3	MaLR	chr14MLT1E330570757	NonProperStrand	4	chr12	78350926	78350998	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-11.5356
chr7	50740072	50740106	protein_coding	Iglon5	intron	ENSMUSG00000013367	NonProperStrand	1	chr9	123461802	123461914	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39846705	39846759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	129542133	129542202	SINE	B4	B4	chr5B4129542118	ProperStrand	1	1	-inf
chr14	16418443	16420352	LTR	BGLII_B	ERVK	chr14BGLII_B16418367	ProperStrand	5	chr14	16416691	16417020	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n16416970	ProperStrand	1	1	-inf
chr15	81330301	81330380	LINE	L1_Mur2	L1	chr15L1_Mur281330061	ProperStrand	1	chr15	81331503	81331577	LINE	L1_Mur2	L1	chr15L1_Mur281330912	ProperStrand	1	1	-inf
chr1	185394405	185396051	LTR	IAPEz-int	ERVK	chr1IAPEz-int185389206	ProperStrand	8	chr6	33602869	33602969	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-10.9322
chr12	99645567	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr15	86195113	86195203	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-8.8609
chr4	86611866	86611948	LTR	RMER13A	ERVK	chr4RMER13A86611368	ProperStrand	5	chr17	47143609	47143655	protein_coding	Ubr2	intron	ENSMUSG00000023977	NonProperStrand	8	1	-20.8574
chr17	39848272	39848314	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	102052066	102052087	protein_coding	Itgb7	intron	ENSMUSG00000001281	ProperStrand	1	1	-inf
chr9	75150380	75150470	protein_coding	Myo5c	intron	ENSMUSG00000033590	ProperStrand	21	chr9	72710483	72712210	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	2	-16.9404
chr12	109654675	109654693	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	chr12	3765975	3766081	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	2	-10.2802
chr2	90897915	90897979	protein_coding	Psmc3	exon	ENSMUSG00000002102	NonProperStrand	3	chr9	118674951	118674999	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr1	55157776	55157827	LINE	Lx5	L1	chr1Lx555157423	NonProperStrand	1	chr12	99645566	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	1	-inf
chr6	3201469	3201517	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	106781077	106781115	protein_coding	Smurf2	intron	ENSMUSG00000018363	ProperStrand	51	1	-3.1871
chr10	25598624	25598724	LINE	L1M7	L1	chr10L1M725598232	NonProperStrand	1	chr10	25598997	25599087	LINE	L1MC4	L1	chr10L1MC425598981	ProperStrand	1	1	-inf
chr1	157396726	157396826	SINE	B4	B4	chr1B4157396672	ProperStrand	1	chr12	67667898	67667988	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr9	14814127	14814240	protein_coding	Panx1	intron	ENSMUSG00000031934	NonProperStrand	29	chr17	37414448	37414477	pseudogene	Olfr755-ps1	.	ENSMUSG00000092556	ProperStrand	2	1	-19.6718
chr7	34119178	34125577	LINE	L1Md_F3	L1	chr7L1Md_F334122851	ProperStrand	2	chr17	39846783	39846815	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr8	105357140	105357258	LINE	Lx5	L1	chr8Lx5105356794	ProperStrand	10	chr5	35740406	35740440	protein_coding	Hmx1	intron	ENSMUSG00000067438	ProperStrand	2	1	-20.0413
chr6	39243097	39243187	LTR	RLTR20D	ERVK	chr6RLTR20D39243085	NonProperStrand	3	chr6	39242899	39243000	SINE	ID_B1	B4	chr6ID_B139242904	ProperStrand	3	3	-inf
chrX	77572389	77572428	LINE	Lx2A1	L1	chrXLx2A177572041	ProperStrand	1	chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	1	-inf
chr8	66068296	66068386	LINE	Lx2B	L1	chr8Lx2B66068253	ProperStrand	1	chr8	66068053	66068153	LTR	ORR1C2	MaLR	chr8ORR1C266068017	ProperStrand	1	1	-inf
chr12	82291791	82291892	LTR	ERVL-E-int	ERVL	chr12ERVL-E-int82291723	NonProperStrand	3	chr12	82292060	82292150	LTR	MTC	MaLR	chr12MTC82292033	NonProperStrand	3	3	-inf
chr17	39847223	39847288	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	23856019	23856094	processed_transcript	1520401A03Rik	.	ENSMUSG00000043747	NonProperStrand	3	1	-5.4882
chr6	3201469	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	129200851	129206194	protein_coding-noncoding	Hdac1	utr3	ENSMUSG00000028800	NonProperStrand	5	1	-7.8442
chr19	8888639	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	chr2	158359793	158359816	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-8.9100
chr6	125492188	125492288	LINE	L1_Mur3	L1	chr6L1_Mur3125492216	ProperStrand	2	chr6	125492302	125492392	SINE	B2_Mm1a	B2	chr6B2_Mm1a125492312	ProperStrand	1	1	-inf
chr12	86458637	86458737	protein_coding	Dlst	intron	ENSMUSG00000004789	NonProperStrand	77	chr2	63868212	63868302	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-11.0191
chr3	50717718	50717818	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n50717513	NonProperStrand	1	chr3	50717875	50717965	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n50717841	NonProperStrand	1	1	-inf
chr17	39846148	39847937	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	40803045	40805101	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	194	-inf
chr6	67272022	67272207	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr4	107019200	107019285	protein_coding	Yipf1	intron	ENSMUSG00000057375	ProperStrand	174	1	-7.4336
chr9	58598910	58598958	SINE	ID_B1	B4	chr9ID_B158598883	ProperStrand	1	chr2	154872651	154872709	protein_coding	a	intron	ENSMUSG00000027596	NonProperStrand	26	1	-inf
chr11	93915667	93915719	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	chr10	63018150	63018171	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-10.3390
chr17	39847511	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	70269846	70269902	LTR	RMER15-int	ERVL	chr4RMER15-int70269761	NonProperStrand	2	2	-inf
chr2	35197316	35197346	LTR	RMER10A	ERVL	chr2RMER10A35197146	NonProperStrand	1	chr4	150241088	150242135	protein_coding	Errfi1	exon	ENSMUSG00000028967	ProperStrand	111	1	-inf
chr16	90019901	90020010	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr10	31314158	31314185	protein_coding	Rnf217	intron	ENSMUSG00000063760	NonProperStrand	2	1	-13.7511
chr6	115841457	115841557	protein_coding	Ift122	intron	ENSMUSG00000030323	ProperStrand	9	chr6	56744255	56744345	protein_coding	Kbtbd2	intron	ENSMUSG00000059486	ProperStrand	2	1	-20.8824
chr7	29155855	29155899	protein_coding-noncoding	Plekhg2	utr3	ENSMUSG00000037552	NonProperStrand	2	chr15	86194869	86194944	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-16.2531
chr13	102896393	102896493	LINE	L1Md_F2	L1	chr13L1Md_F2102896345	NonProperStrand	1	chr13	102896518	102896608	LINE	L1Md_F2	L1	chr13L1Md_F2102896491	NonProperStrand	1	1	-inf
chr11	68380503	68380603	LTR	LTR88a	Gypsy	chr11LTR88a68380462	ProperStrand	2	chr11	68280937	68281027	protein_coding	Pik3r5	intron	ENSMUSG00000020901	NonProperStrand	75	1	-18.7369
chr7	136978294	136978384	LINE	L1MC	L1	chr7L1MC136978232	NonProperStrand	4	chr7	136978502	136978602	SINE	RSINE1	B4	chr7RSINE1136978504	NonProperStrand	4	4	-inf
chr5	117373693	117373821	LTR	RLTR28	ERVL	chr5RLTR28117373509	NonProperStrand	1	chr12	103610654	103610671	protein_coding	Rin3	intron	ENSMUSG00000044456	ProperStrand	7	1	-inf
chr1	161036104	161036139	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr6	95654988	95655076	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-10.8022
chr6	42182665	42182755	LINE	L1ME1	L1	chr6L1ME142182305	ProperStrand	1	chr6	42183107	42183207	LINE	L1VL4	L1	chr6L1VL442182881	ProperStrand	1	1	-inf
chr17	39847388	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	40744032	40744109	LTR	ORR1A4-int	MaLR	chr4ORR1A4-int40743770	NonProperStrand	2	1	-5.4040
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	128699570	128699673	LTR	MLT1H2	MaLR	chr7MLT1H2128699549	ProperStrand	1	1	-inf
chr12	78350912	78351002	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr3	84922200	84922300	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-3.8947
chr5	140181353	140181430	LTR	MTC	MaLR	chr5MTC140181186	ProperStrand	3	chrX	134693319	134693386	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-16.5684
chr14	67693661	67693751	SINE	B3	B2	chr14B367693573	ProperStrand	1	chr14	67680258	67693653	protein_coding	Ppp2r2a	intron	ENSMUSG00000022052	ProperStrand	54	1	-inf
chr11	101459004	101459047	antisense	Gm11634	.	ENSMUSG00000085486	ProperStrand	18	chr11	88700061	88700151	protein_coding	Akap1	intron	ENSMUSG00000018428	ProperStrand	140	1	-12.7656
chr13	16306939	16307029	LINE	Lx7	L1	chr13Lx716306897	NonProperStrand	1	chr13	16306537	16306637	SINE	MIRb	MIR	chr13MIRb16306534	NonProperStrand	1	1	-inf
chr7	4439242	4439299	protein_coding	Ppp1r12c	intron	ENSMUSG00000019254	ProperStrand	7	chr13	55322049	55322116	protein_coding	Nsd1	intron	ENSMUSG00000021488	ProperStrand	81	1	-15.8401
chr12	110372198	110372288	LINE	L1MA6	L1	chr12L1MA6110372139	NonProperStrand	5	chr12	110372098	110372198	LINE	Lx2	L1	chr12Lx2110366071	NonProperStrand	9	3	-inf
chr7	18899950	18899985	LINE	L1Md_T	L1	chr7L1Md_T18897834	ProperStrand	18	chr9	103582792	103582837	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-12.8096
chr3	148928283	148928363	SINE	RSINE1	B4	chr3RSINE1148928225	NonProperStrand	1	chr11	69668477	69668647	protein_coding	Tnk1	exon	ENSMUSG00000001583	ProperStrand	269	1	-inf
chr11	120074563	120074663	LTR	MTC-int	MaLR	chr11MTC-int120074408	ProperStrand	1	chr11	120074783	120074873	SINE	B1_Mus1	Alu	chr11B1_Mus1120074797	ProperStrand	1	1	-inf
chr17	39848501	39848591	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	3390112	3390212	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	NonProperStrand	12	1	-4.6162
chr11	49212569	49212659	LINE	L1_Mur3	L1	chr11L1_Mur349212155	ProperStrand	1	chr11	49212958	49213058	LINE	Lx6	L1	chr11Lx649212928	ProperStrand	1	1	-inf
chr16	9459574	9459674	LINE	L1MD1	L1	chr16L1MD19459582	NonProperStrand	1	chr16	9459421	9459511	SINE	B4A	B4	chr16B4A9459269	NonProperStrand	1	1	-inf
chr12	76580654	76580670	protein_coding	Ppp2r5e	intron	ENSMUSG00000021051	ProperStrand	27	chr6	124449845	124449983	protein_coding	C1rl	intron	ENSMUSG00000038527	NonProperStrand	9	1	-17.5102
chr17	39848008	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	80290227	80290310	protein_coding	Atl2	intron	ENSMUSG00000059811	NonProperStrand	4	1	-3.7035
chr11	54528289	54528389	LTR	ORR1A2	MaLR	chr11ORR1A254528241	ProperStrand	1	chr11	54528103	54528193	LTR	RMER6A	ERVK	chr11RMER6A54527862	NonProperStrand	4	1	-inf
chr17	8182393	8184439	LTR	MT2B	ERVL	chr17MT2B8182289	ProperStrand	2	chr17	8172983	8182292	LTR	MTEa	MaLR	chr17MTEa8182125	ProperStrand	2	2	-inf
chrX	87238364	87238397	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr11	97257424	97257467	protein_coding	Socs7	utr3	ENSMUSG00000038485	NonProperStrand	32	1	-10.7508
chr6	94319662	94319783	LTR	RMER15-int	ERVL	chr6RMER15-int94319511	ProperStrand	2	chr6	94323372	94323409	SINE	B3A	B2	chr6B3A94323373	ProperStrand	2	2	-inf
chr17	39846378	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	107212517	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	7	-3.5891
chr17	39847211	39847252	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	70410823	70412881	protein_coding	Sltm	intron	ENSMUSG00000032212	NonProperStrand	22	3	-4.7687
chr13	114064340	114064378	LTR	IAPEz-int	ERVK	chr13IAPEz-int114063503	ProperStrand	37	chr12	79408124	79408177	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-7.8806
chr1	60162460	60162560	protein_coding-noncoding	Carf	utr5	ENSMUSG00000026017	NonProperStrand	1	chr1	60162808	60162898	protein_coding	Carf	intron	ENSMUSG00000026017	NonProperStrand	4	1	-inf
chr1	100180181	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr11	33255338	33255465	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-6.1042
chr17	25831175	25831356	Simple_repeat	(CA)n	Simple_repeat	chr17(CA)n25831299	NonProperStrand	6	chr17	25830984	25831175	snRNA	ENSMUSG00000064680_U6	.	ENSMUSG00000064680	ProperStrand	6	6	-inf
chr1	136364891	136364953	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr4	32522048	32522146	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	1	-9.0068
chr18	14643498	14643545	LTR	MLT1J2	MaLR	chr18MLT1J214643491	ProperStrand	1	chr12	79436846	79436930	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr17	39846066	39846082	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr19	6940504	6940530	LTR	RMER16-int	ERVK	chr19RMER16-int6940500	ProperStrand	1	1	-inf
chr11	87426782	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr9	53626945	53626973	protein_coding	Slc35f2	intron	ENSMUSG00000042195	NonProperStrand	16	1	-14.5185
chr9	67995395	67995495	LINE	L1Md_T	L1	chr9L1Md_T67993526	NonProperStrand	3	chr9	67951418	67951508	LTR	ORR1D2	MaLR	chr9ORR1D267951367	ProperStrand	1	1	-inf
chr2	84670349	84670531	SINE	PB1D7	Alu	chr2PB1D784670434	ProperStrand	9	chr2	84670107	84670336	protein_coding	Timm10	utr3	ENSMUSG00000027076	NonProperStrand	18	8	-inf
chr11	50017318	50017341	protein_coding	Sqstm1	intron	ENSMUSG00000015837	ProperStrand	2	chr2	34812978	34822581	protein_coding	Traf1	intron	ENSMUSG00000026875	ProperStrand	12	1	-inf
chr15	83250736	83250845	protein_coding	Pacsin2	intron	ENSMUSG00000016664	ProperStrand	107	chr1	56953402	56953444	protein_coding	Satb2	intron	ENSMUSG00000038331	ProperStrand	21	1	-12.9887
chr14	61370411	61370498	protein_coding-noncoding	Spata13	utr5	ENSMUSG00000021990	NonProperStrand	1	chr17	23819227	23819244	protein_coding	Cldn6	utr3	ENSMUSG00000023906	ProperStrand	74	1	-inf
chr14	108424922	108425012	LINE	Lx9	L1	chr14Lx9108424898	ProperStrand	1	chr14	108425223	108425323	LTR	ORR1B1	MaLR	chr14ORR1B1108425242	ProperStrand	1	1	-inf
chr1	42194780	42194880	LINE	L1Md_A	L1	chr1L1Md_A42194273	NonProperStrand	1	chr2	44861515	44861605	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	1	-inf
chr8	106555545	106555567	LTR	RLTR18B	ERVK	chr8RLTR18B106555302	NonProperStrand	4	chr13	97190599	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr5	29211218	29211308	lincRNA	9530036O11Rik	intron	ENSMUSG00000086663	NonProperStrand	35	chr8	68905518	68905618	protein_coding	March1	intron	ENSMUSG00000036469	NonProperStrand	24	1	-14.9703
chr19	8723994	8724034	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr2	156822992	156823079	protein_coding	Dsn1	intron	ENSMUSG00000027635	ProperStrand	19	1	-15.3388
chr11	97656708	97656743	SINE	B1_Mus2	Alu	chr11B1_Mus297656664	NonProperStrand	1	chr5	92209750	92209777	pseudogene	Gm15710	.	ENSMUSG00000084111	NonProperStrand	50	1	-inf
chr6	93972109	93972182	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr2	152820619	152820694	protein_coding	Ttll9	intron	ENSMUSG00000074673	NonProperStrand	58	1	-6.3518
chr6	61046495	61046519	LINE	Lx5	L1	chr6Lx561046418	ProperStrand	1	chr6	61046926	61047054	LINE	Lx5	L1	chr6Lx561046881	NonProperStrand	1	1	-inf
chr17	35005507	35005568	protein_coding	C2	intron	ENSMUSG00000024371	NonProperStrand	158	chr7	127582559	127582741	protein_coding	Abca16	intron	ENSMUSG00000051900	ProperStrand	96	1	-9.1368
chr4	125543700	125543816	LTR	RMER15	ERVL	chr4RMER15125543637	NonProperStrand	1	chr2	152680389	152680428	protein_coding	Tpx2	intron	ENSMUSG00000027469	ProperStrand	42	1	-inf
chr6	54641179	54641241	protein_coding	2410066E13Rik	intron	ENSMUSG00000038065	ProperStrand	7	chr2	5400491	5400543	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.8922
chr11	120347792	120347832	lincRNA	Gm16755	exon	ENSMUSG00000086218	ProperStrand	60	chr8	121598615	121598733	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	1	-11.0570
chr6	128452497	128452568	protein_coding	Pzp	intron	ENSMUSG00000030359	NonProperStrand	26	chr15	75777596	75777617	protein_coding	Zfp623	utr5	ENSMUSG00000050846	NonProperStrand	12	1	-17.0151
chr16	5077181	5077271	protein_coding	Ubn1	exon	ENSMUSG00000039473	ProperStrand	34	chr8	123971030	123971130	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	4	-inf
chr6	30452276	30452359	protein_coding	Tmem209	intron	ENSMUSG00000029782	NonProperStrand	42	chr6	120219124	120219168	protein_coding	B4galnt3	intron	ENSMUSG00000041372	ProperStrand	61	1	-12.7100
chrX	86192467	86192523	LINE	L1_Mus3	L1	chrXL1_Mus386191381	NonProperStrand	23	chr15	80078527	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-10.0231
chr12	56532777	56532867	SINE	B3	B2	chr12B356532718	ProperStrand	1	chr14	28278005	28278105	protein_coding	D14Abb1e	intron	ENSMUSG00000040651	ProperStrand	5	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr1	132989175	132989287	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	1	-7.7385
chr5	41819781	41819847	LINE	Lx3C	L1	chr5Lx3C41815978	ProperStrand	22	chr17	39848165	39848249	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-3.1941
chr4	120408473	120408509	protein_coding	Kcnq4	intron	ENSMUSG00000028631	NonProperStrand	14	chr7	140969660	140969710	protein_coding	Fank1	intron	ENSMUSG00000053111	ProperStrand	73	1	-14.5976
chr2	136990800	136990848	LINE	L1MC4	L1	chr2L1MC4136990660	ProperStrand	2	chr2	136985485	136985543	LTR	ORR1D1	MaLR	chr2ORR1D1136985387	NonProperStrand	2	2	-inf
chr1	25754940	25754961	protein_coding	Bai3	intron	ENSMUSG00000033569	ProperStrand	36	chrX	164302936	164303029	protein_coding	Frmpd4	intron	ENSMUSG00000049176	NonProperStrand	76	1	-12.5795
chr17	39847701	39847759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	64570715	64570763	LTR	MT2B	ERVL	chr1MT2B64570260	ProperStrand	1	1	-inf
chr6	116224534	116226463	protein_coding-noncoding	Anubl1	utr5	ENSMUSG00000042213	ProperStrand	2	chr6	116224429	116224519	protein_coding	Anubl1	intron	ENSMUSG00000042213	ProperStrand	34	2	-inf
chr17	39843552	39843577	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr10	127521006	127521041	protein_coding	Atp5b	exon	ENSMUSG00000025393	NonProperStrand	26	1	-4.0922
chr4	64388910	64389010	LINE	L1_Mur2	L1	chr4L1_Mur264388852	NonProperStrand	1	chr4	64388745	64388835	LINE	L1_Mus1	L1	chr4L1_Mus164388363	ProperStrand	1	1	-inf
chr13	21431870	21431960	SINE	B3	B2	chr13B321431824	NonProperStrand	1	chr13	21432101	21432201	SINE	ID_B1	B4	chr13ID_B121432040	NonProperStrand	1	1	-inf
chr18	31897930	31898029	LINE	Lx7	L1	chr18Lx731897955	NonProperStrand	2	chr18	31897824	31897914	SINE	B1_Mus2	Alu	chr18B1_Mus231897806	ProperStrand	2	2	-inf
chr17	39843882	39843913	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr5	136770462	136770503	antisense	Gm16599	.	ENSMUSG00000086220	ProperStrand	7	1	-7.2053
chr11	58056758	58056858	SINE	B1_Mus1	Alu	chr11B1_Mus158056751	ProperStrand	2	chr11	58056670	58056760	SINE	B3A	B2	chr11B3A58056665	ProperStrand	2	2	-inf
chr15	79388598	79388643	SINE	B1_Mus2	Alu	chr15B1_Mus279388576	ProperStrand	1	chr9	123462046	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	120270870	120270898	LTR	MTD	MaLR	chr6MTD120270690	ProperStrand	1	chr6	120271074	120271200	LTR	MTD	MaLR	chr6MTD120271067	ProperStrand	1	1	-inf
chr1	162698148	162698226	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	chr5	122308895	122308963	protein_coding	Cux2	utr3	ENSMUSG00000072641	NonProperStrand	2	1	-17.3876
chr4	86932303	86932334	LINE	L4	RTE	chr4L486932155	NonProperStrand	1	chrX	162885275	162885327	protein_coding	Trappc2	intron	ENSMUSG00000079317	NonProperStrand	2	1	-inf
chr17	26643826	26643906	protein_coding-noncoding	Dusp1	utr3	ENSMUSG00000024190	NonProperStrand	15	chr17	26643992	26644027	protein_coding	Dusp1	exon	ENSMUSG00000024190	NonProperStrand	9	1	-18.7314
chr17	39846758	39846816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	67010939	67011007	protein_coding	Ado	exon	ENSMUSG00000057134	ProperStrand	1	1	-inf
chr10	122565806	122565896	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr16	16467997	16468097	protein_coding	Fgd4	intron	ENSMUSG00000022788	NonProperStrand	20	1	-14.7508
chr13	88063669	88063686	LINE	L1_Mus2	L1	chr13L1_Mus288062888	ProperStrand	1	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	1	-inf
chr11	120957034	120957856	LINE	L1Md_Gf	L1	chr11L1Md_Gf120957023	ProperStrand	7	chr11	120957933	120958033	lincRNA	Gm11791	intron	ENSMUSG00000084853	NonProperStrand	13	1	-20.2412
chr6	29138577	29139591	SINE	B1_Mur1	Alu	chr6B1_Mur129138582	ProperStrand	2	chr6	29139614	29143631	SINE	PB1	Alu	chr6PB129143562	ProperStrand	2	2	-inf
chr6	66992727	66992798	lincRNA	E230016M11Rik	intron	ENSMUSG00000087231	NonProperStrand	42	chr6	6578560	6578633	lincRNA	RP24-129K7.2	exon	ENSMUSG00000093675	ProperStrand	18	1	-15.1922
chr17	85118251	85118342	protein_coding	Lrpprc	intron	ENSMUSG00000024120	NonProperStrand	54	chr9	62804099	62804119	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-10.9986
chr12	87140084	87140184	protein_coding	Mfsd7c	intron	ENSMUSG00000034258	NonProperStrand	17	chr12	67667896	67667987	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-14.1381
chr4	137541749	137542303	SINE	ID_B1	B4	chr4ID_B1137542066	NonProperStrand	9	chr4	137541663	137541753	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n137541139	ProperStrand	19	9	-inf
chr17	39846453	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	143675189	143675285	LTR	ORR1A4-int	MaLR	chr1ORR1A4-int143673605	ProperStrand	1	1	-inf
chr12	100572904	100572935	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	chr11	33152625	33152717	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-5.8260
chr17	39848258	39848320	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	117811470	117811542	SINE	ID_B1	B4	chr11ID_B1117811430	ProperStrand	1	1	-inf
chr11	13440084	13440174	LTR	MTC	MaLR	chr11MTC13440078	ProperStrand	1	chr11	13439839	13439940	LTR	ORR1B1	MaLR	chr11ORR1B113439699	ProperStrand	1	1	-inf
chr1	100180179	100180217	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr17	39848099	39848302	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	4	-3.4862
chr10	47532490	47532590	LINE	Lx2	L1	chr10Lx247531643	ProperStrand	1	chr10	47969141	47969231	LINE	Lx4A	L1	chr10Lx4A47968966	NonProperStrand	1	1	-inf
chr14	30774055	30777923	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int30773158	NonProperStrand	1	chr14	30777922	30783972	LTR	ORR1B1	MaLR	chr14ORR1B130777753	ProperStrand	1	1	-inf
chr1	88582093	88582193	LINE	L1MC4	L1	chr1L1MC488582040	NonProperStrand	1	chr1	88581846	88581936	Low_complexity	CT-rich	Low_complexity	chr1CT-rich88581780	ProperStrand	1	1	-inf
chr17	39846883	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	102450700	102450718	protein_coding	Pamr1	intron	ENSMUSG00000027188	ProperStrand	3	1	-4.3017
chr7	107182343	107182360	protein_coding	Chrdl2	intron	ENSMUSG00000030732	NonProperStrand	2	chr2	102006211	102006335	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-17.9152
chr9	26572426	26572526	protein_coding	Glb1l2	intron	ENSMUSG00000036395	NonProperStrand	1	chr9	26569015	26569105	protein_coding	B3gat1	intron	ENSMUSG00000045994	NonProperStrand	1	1	-inf
chr3	102609677	102609767	LINE	L1_Mur3	L1	chr3L1_Mur3102609674	NonProperStrand	1	chr3	102609484	102609584	SINE	B3	B2	chr3B3102609415	NonProperStrand	1	1	-inf
chr10	41853577	41853677	LTR	RLTR20A	ERVK	chr10RLTR20A41853567	ProperStrand	1	chr10	41853362	41853452	SINE	B1_Mus2	Alu	chr10B1_Mus241853367	NonProperStrand	1	1	-inf
chr14	18710352	18710450	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr13	97190577	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1868
chr3	129536036	129536072	LINE	L1MB3	L1	chr3L1MB3129535982	NonProperStrand	1	chr3	129541424	129541536	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-inf
chr3	51283701	51283801	SINE	B4A	B4	chr3B4A51283716	NonProperStrand	1	chr3	51284536	51284626	SINE	ID_B1	B4	chr3ID_B151284551	ProperStrand	1	1	-inf
chr17	26655734	26655779	LINE	L1M4	L1	chr17L1M426655533	ProperStrand	2	chr13	97190548	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr10	70444313	70444456	protein_coding	Bicc1	intron	ENSMUSG00000014329	NonProperStrand	34	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-13.2394
chr8	83937702	83937718	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr2	120669042	120669165	protein_coding	Ttbk2	intron	ENSMUSG00000090100	NonProperStrand	17	1	-9.0560
chr13	96660184	96663035	protein_coding	Iqgap2	intron	ENSMUSG00000021676	ProperStrand	82	chr6	40136340	40136420	protein_coding	Gm5567	intron	ENSMUSG00000057716	ProperStrand	8	1	-15.5426
chr8	117263232	117263295	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr2	31673545	31673627	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	1	-4.4789
chr10	75648541	75648614	protein_coding	Slc5a4a	intron	ENSMUSG00000020229	NonProperStrand	35	chr15	89115268	89115319	protein_coding	Ppp6r2	intron	ENSMUSG00000036561	NonProperStrand	43	1	-13.7874
chr11	31058868	31058908	LTR	RLTR22_Mus	ERVK	chr11RLTR22_Mus31058626	ProperStrand	1	chr17	39846759	39846850	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	42112656	42112709	protein_coding	Lace1	intron	ENSMUSG00000038302	NonProperStrand	13	chr6	39143365	39143459	protein_coding	Jhdm1d	intron	ENSMUSG00000042599	ProperStrand	22	1	-17.2387
chr8	69895261	69901545	LTR	IAPLTR3-int	ERVK	chr8IAPLTR3-int69892619	NonProperStrand	11	chr9	123462112	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr12	80165141	80165223	protein_coding	Plekhh1	exon	ENSMUSG00000060716	NonProperStrand	24	1	-13.4861
chr5	129716750	129716778	Simple_repeat	(CAGG)n	Simple_repeat	chr5(CAGG)n129716737	ProperStrand	1	chr2	165824736	165824861	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	1	-inf
chr13	55122391	55122474	protein_coding-noncoding	Hk3	utr5	ENSMUSG00000025877	NonProperStrand	5	chr2	138279517	138279538	protein_coding	Btbd3	intron	ENSMUSG00000062098	ProperStrand	66	1	-16.9489
chr17	39847762	39847790	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	121204540	121204558	protein_coding	Slc44a3	intron	ENSMUSG00000039865	ProperStrand	4	1	-3.7035
chr16	33266256	33266327	protein_coding	Snx4	intron	ENSMUSG00000022808	ProperStrand	21	chr9	104231532	104231613	protein_coding	Acpp	intron	ENSMUSG00000032561	ProperStrand	41	1	-14.9217
chr19	21283326	21283416	SINE	B1_Mus2	Alu	chr19B1_Mus221283325	NonProperStrand	1	chr19	21283497	21283597	SINE	B4A	B4	chr19B4A21283487	ProperStrand	1	1	-inf
chr5	113332738	113332840	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int113332167	ProperStrand	3	chr5	113332946	113333036	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int113332930	ProperStrand	11	1	-inf
chr17	24241389	24243280	protein_coding-noncoding	Pdpk1	utr3	ENSMUSG00000024122	ProperStrand	15	chr17	24223403	24244571	protein_coding	Pdpk1	intron	ENSMUSG00000024122	ProperStrand	64	8	-20.9560
chr11	109011823	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	49506307	49506345	LTR	MTC	MaLR	chr13MTC49505933	NonProperStrand	1	1	-inf
chr2	25223277	25223936	SINE	B2_Mm1a	B2	chr2B2_Mm1a25223293	NonProperStrand	3	chr2	25223179	25223285	SINE	B3	B2	chr2B325223115	NonProperStrand	5	3	-inf
chr17	39846978	39847027	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	33331498	33331594	SINE	B3A	B2	chr17B3A33331448	NonProperStrand	1	1	-inf
chrX	151096429	151096519	LINE	Lx7	L1	chrXLx7151096424	ProperStrand	13	chrX	151096271	151096371	Low_complexity	A-rich	Low_complexity	chrXA-rich151096279	NonProperStrand	13	13	-inf
chr10	128492067	128492299	LINE	L1Md_F	L1	chr10L1Md_F128491087	ProperStrand	14	chr10	128490960	128492065	LINE	L1Md_F3	L1	chr10L1Md_F3128488776	ProperStrand	4	2	-inf
chr11	106263466	106263542	protein_coding	Ern1	intron	ENSMUSG00000020715	ProperStrand	17	chr2	5621693	5621759	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.0412
chr17	39847701	39847734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	110417204	110417226	LTR	RMER12	ERVK	chr7RMER12110417120	ProperStrand	2	1	-5.4040
chr9	122979481	122979547	protein_coding-noncoding	Zdhhc3	utr3	ENSMUSG00000025786	NonProperStrand	9	chr9	122971764	122975710	protein_coding	Tgm4	intron	ENSMUSG00000025787	ProperStrand	19	1	-18.0438
chr11	12662853	12662943	LINE	L1MA5A	L1	chr11L1MA5A12662326	ProperStrand	1	chr11	12674877	12674977	LINE	L1Md_F2	L1	chr11L1Md_F212672480	NonProperStrand	1	1	-inf
chr6	131371488	131371583	LINE	Lx6	L1	chr6Lx6131370997	ProperStrand	3	chr6	131378825	131378868	LINE	Lx6	L1	chr6Lx6131378647	ProperStrand	1	1	-inf
chr7	16586943	16587006	SINE	PB1D9	Alu	chr7PB1D916586944	ProperStrand	1	chr7	16586800	16586839	SINE	RSINE1	B4	chr7RSINE116586706	ProperStrand	1	1	-inf
chr8	90999592	90999690	LINE	Lx8	L1	chr8Lx890999012	NonProperStrand	2	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chrX	59584039	59584129	LINE	Lx9	L1	chrXLx959583946	NonProperStrand	1	chrX	59584228	59584328	LINE	Lx9	L1	chrXLx959583946	ProperStrand	1	1	-inf
chr6	59828421	59828511	LTR	RLTR21	ERVK	chr6RLTR2159828133	NonProperStrand	1	chr6	59828802	59828902	LTR	RLTR21	ERVK	chr6RLTR2159828668	NonProperStrand	1	1	-inf
chr10	59951720	59951825	protein_coding	Cdh23	intron	ENSMUSG00000012819	ProperStrand	124	chr11	120110935	120110987	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	136	1	-8.9246
chr2	29652616	29652663	protein_coding	Coq4	utr3	ENSMUSG00000026798	ProperStrand	35	chr2	29630103	29630160	protein_coding	Trub2	intron	ENSMUSG00000039826	NonProperStrand	115	1	-11.8039
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr9	65635781	65635812	protein_coding	Zfp609	intron	ENSMUSG00000040524	NonProperStrand	165	1	-5.8476
chr7	80029846	80029959	LTR	MTA_Mm	MaLR	chr7MTA_Mm80029756	NonProperStrand	2	chr9	123462036	123462075	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr6	3524927	3524975	protein_coding	Ccdc132	intron	ENSMUSG00000001376	ProperStrand	42	chr2	37647130	37647194	protein_coding	Crb2	intron	ENSMUSG00000035403	NonProperStrand	3	1	-19.3993
chr9	103354986	103355165	protein_coding	Bfsp2	intron	ENSMUSG00000032556	ProperStrand	72	chr4	146933689	146933804	protein_coding	Gm13154	intron	ENSMUSG00000065999	ProperStrand	5	2	-20.4607
chr13	37857427	37857534	LTR	MTEa	MaLR	chr13MTEa37857424	NonProperStrand	22	chr13	37857336	37857433	LTR	ORR1E	MaLR	chr13ORR1E37857256	ProperStrand	17	17	-inf
chr12	78350926	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr15	80135254	80135282	protein_coding	Cacna1i	intron	ENSMUSG00000022416	ProperStrand	114	1	-4.6499
chr7	81175508	81175535	LTR	MLT1E3	MaLR	chr7MLT1E381175445	ProperStrand	1	chr7	81178339	81178429	LTR	RMER19C	ERVK	chr7RMER19C81178332	ProperStrand	1	1	-inf
chr6	120264624	120264707	SINE	B2_Mm2	B2	chr6B2_Mm2120264541	ProperStrand	1	chr6	120264794	120264835	SINE	PB1	Alu	chr6PB1120264791	ProperStrand	1	1	-inf
chr18	84577208	84577284	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	chr7	30956222	30956402	protein_coding	Gm5113	intron	ENSMUSG00000066647	NonProperStrand	18	2	-18.8806
chr17	38125569	38125669	LINE	Lx5	L1	chr17Lx538125370	ProperStrand	1	chr17	38125793	38125883	LINE	Lx5	L1	chr17Lx538125694	ProperStrand	1	1	-inf
chr17	4082170	4082278	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr11	88588832	88588862	lincRNA	C030037D09Rik	intron	ENSMUSG00000087574	NonProperStrand	108	1	-6.4946
chr4	144544731	144544821	LTR	ORR1E	MaLR	chr4ORR1E144544752	ProperStrand	1	chr4	144544434	144544534	SINE	B4A	B4	chr4B4A144544439	NonProperStrand	1	1	-inf
chr12	8758297	8758351	protein_coding	Pum2	utr3	ENSMUSG00000020594	ProperStrand	67	chr17	83786322	83786385	protein_coding	Eml4	intron	ENSMUSG00000032624	ProperStrand	63	1	-11.7023
chr17	39848190	39848255	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	84912364	84912441	protein_coding	Slc16a14	intron	ENSMUSG00000026220	ProperStrand	2	1	-8.4422
chr13	94804557	94804595	LINE	Lx9	L1	chr13Lx994804454	NonProperStrand	1	chr3	123279225	123290448	protein_coding	Ndst3	intron	ENSMUSG00000027977	NonProperStrand	41	1	-inf
chrX	50759734	50759834	LTR	MTD	MaLR	chrXMTD50759755	NonProperStrand	1	chrX	50759969	50760059	SINE	PB1	Alu	chrXPB150759953	ProperStrand	1	1	-inf
chr11	82865968	82866050	LTR	MERVL-int	ERVL	chr11MERVL-int82864376	NonProperStrand	2	chr4	139393117	139393166	Simple_repeat	(TC)n	Simple_repeat	chr4(TC)n139393064	ProperStrand	1	1	-inf
chr12	13214728	13214818	LTR	MLT1K	MaLR	chr12MLT1K13214645	ProperStrand	1	chr12	13215125	13215225	SINE	B4A	B4	chr12B4A13214966	NonProperStrand	1	1	-inf
chr8	95864794	95865216	LINE	Lx5	L1	chr8Lx595864721	NonProperStrand	11	chr17	39847575	39848068	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-3.4077
chr9	122993522	122993596	protein_coding	Zdhhc3	intron	ENSMUSG00000025786	NonProperStrand	28	chr18	33181624	33181641	protein_coding	Camk4	intron	ENSMUSG00000038128	NonProperStrand	36	1	-14.6049
chr7	116176916	116180399	protein_coding	Tub	utr3	ENSMUSG00000031028	NonProperStrand	50	chr7	116181189	116181268	protein_coding	Ric3	utr3	ENSMUSG00000048330	ProperStrand	107	1	-11.2274
chr14	108062256	108062346	LTR	RLTR20B3	ERVK	chr14RLTR20B3108062120	NonProperStrand	1	chr14	108062640	108062740	LTR	RLTR9E	ERVK	chr14RLTR9E108062461	NonProperStrand	1	1	-inf
chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	78389233	78389291	protein_coding	Slc17a5	intron	ENSMUSG00000049624	NonProperStrand	16	1	-3.4729
chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	chr15	83149671	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-10.2700
chr17	39848669	39848759	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	mmu-miR-5099	4	20	miRNA	mmu-miR-5099	.	mmu-miR-5099	ProperStrand	3	1	-7.6307
chr8	128739946	128740005	LTR	ORR1B1	MaLR	chr8ORR1B1128739779	ProperStrand	1	chr8	128737340	128737398	SINE	B4A	B4	chr8B4A128737203	NonProperStrand	1	1	-inf
chr7	100879630	100879680	LTR	RMER5	ERV1	chr7RMER5100879193	ProperStrand	4	chr11	84510218	84510278	SINE	MIRb	MIR	chr11MIRb84510222	NonProperStrand	1	1	-inf
chr17	39848535	39848595	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	5846617	5846657	protein_coding	Snx9	intron	ENSMUSG00000002365	NonProperStrand	21	1	-3.5346
chr11	89043107	89043216	SINE	B4A	B4	chr11B4A89043116	NonProperStrand	2	chr11	89043076	89043109	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n89043054	NonProperStrand	2	2	-inf
chr3	26321224	26321241	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr16	25374631	25374649	protein_coding	Tprg	intron	ENSMUSG00000048399	NonProperStrand	7	1	-18.8173
chr12	65218980	65219070	DNA	URR1B	MER1_type	chr12URR1B65218872	NonProperStrand	1	chr12	65219110	65219210	LINE	Lx9	L1	chr12Lx965219100	ProperStrand	1	1	-inf
chr4	125885899	125885999	SINE	B1_Mus2	Alu	chr4B1_Mus2125885887	ProperStrand	1	chr4	125886159	125886249	SINE	B1_Mus2	Alu	chr4B1_Mus2125886173	NonProperStrand	1	1	-inf
chr17	46778584	46778662	protein_coding	Klc4	intron	ENSMUSG00000003546	ProperStrand	42	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.1817
chr17	79636088	79636178	Low_complexity	GA-rich	Low_complexity	chr17GA-rich79636114	ProperStrand	1	chr17	79636291	79636391	Simple_repeat	(GGGAGA)n	Simple_repeat	chr17(GGGAGA)n79636274	ProperStrand	2	1	-inf
chr4	133070588	133070678	SINE	B1F	Alu	chr4B1F133070538	NonProperStrand	7	chr4	133070674	133070774	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n133070690	ProperStrand	6	5	-inf
chr7	58862908	58862998	LINE	L1_Mus4	L1	chr7L1_Mus458862888	ProperStrand	1	chr7	72444218	72444318	protein_coding	Tjp1	intron	ENSMUSG00000030516	ProperStrand	4	1	-inf
chr17	39847072	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	146260991	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	120	-14.6153
chr19	47240997	47241087	LTR	RLTR16	ERVK	chr19RLTR1647240908	ProperStrand	1	chr9	123462085	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	27774732	27774748	LINE	Lx3_Mus	L1	chr1Lx3_Mus27774731	ProperStrand	1	chr11	97815697	97824849	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	1	-inf
chr17	39846818	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	135873650	135873781	protein_coding	Hnrnpr	intron	ENSMUSG00000066037	NonProperStrand	5	2	-5.8332
chr17	52654886	52654935	LINE	L1_Mus1	L1	chr17L1_Mus152651761	NonProperStrand	2	chr17	6459642	6459754	protein_coding	Tmem181b-ps	intron	ENSMUSG00000079733	ProperStrand	49	1	-19.9531
chr1	150413019	150413040	LINE	L1Md_F3	L1	chr1L1Md_F3150409227	ProperStrand	7	chr1	150414431	150414462	LINE	L1Md_F3	L1	chr1L1Md_F3150414424	ProperStrand	2	1	-21.4874
chr14	62084040	62084140	LINE	Lx6	L1	chr14Lx662083074	ProperStrand	1	chr14	62084613	62084703	LINE	Lx6	L1	chr14Lx662084524	ProperStrand	1	1	-inf
chr16	54868596	54868696	DNA	MER2	MER2_type	chr16MER254868490	ProperStrand	1	chr16	54868358	54868448	LINE	L1Md_T	L1	chr16L1Md_T54861609	NonProperStrand	1	1	-inf
chr1	119034840	119034959	LINE	L1Md_F3	L1	chr1L1Md_F3119034588	NonProperStrand	13	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	2	-21.0384
chr16	23111617	23111683	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr9	100427980	100427998	protein_coding	Nck1	intron	ENSMUSG00000032475	NonProperStrand	2	1	-17.4002
chr2	130872947	130873047	SINE	B3A	B2	chr2B3A130872947	ProperStrand	6	chr15	92403539	92403629	protein_coding	Pdzrn4	intron	ENSMUSG00000036218	ProperStrand	35	1	-17.9023
chr16	32255030	32255127	protein_coding	Wdr53	intron	ENSMUSG00000022787	ProperStrand	4	chr4	46115146	46115210	protein_coding	Tmod1	intron	ENSMUSG00000028328	ProperStrand	2	1	-20.9262
chr4	155176496	155176596	SINE	B1_Mur4	Alu	chr4B1_Mur4155176443	ProperStrand	4	chr4	155176608	155176698	SINE	B1_Mus1	Alu	chr4B1_Mus1155176618	ProperStrand	3	2	-inf
chr5	127605246	127605338	SINE	B4A	B4	chr5B4A127605148	ProperStrand	1	chr9	123461945	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	181922507	181922575	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	chr18	75375168	75375204	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-3.9868
chr2	136953525	136953615	SINE	B1_Mur1	Alu	chr2B1_Mur1136953503	ProperStrand	1	chr2	136953634	136953734	SINE	ID4	ID	chr2ID4136953655	NonProperStrand	1	1	-inf
chrX	20676008	20678221	LINE	L1VL2	L1	chrXL1VL220675726	NonProperStrand	5	chrX	20678239	20678664	LINE	L1_Mm	L1	chrXL1_Mm20678267	NonProperStrand	10	3	-inf
chr14	57619764	57619800	LINE	L1Md_T	L1	chr14L1Md_T57617694	ProperStrand	6	chr5	31141172	31141227	protein_coding	Mapre3	intron	ENSMUSG00000029166	NonProperStrand	36	1	-17.9499
chr10	75914883	75914960	protein_coding	2610028H24Rik	intron	ENSMUSG00000009114	NonProperStrand	16	chr9	86720745	86720825	protein_coding	Snap91	intron	ENSMUSG00000033419	ProperStrand	34	1	-15.8701
chr9	123462125	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	21388389	21388476	pseudogene	Gm11270	.	ENSMUSG00000084414	ProperStrand	1	1	-inf
chr12	86519874	86519903	SINE	RSINE1	B4	chr12RSINE186519832	NonProperStrand	1	chr15	76174007	76174026	protein_coding	Cyc1	exon	ENSMUSG00000022551	ProperStrand	1	1	-inf
chr2	54107789	54107889	LINE	L1Md_A	L1	chr2L1Md_A54104975	ProperStrand	1	chr2	50456876	50456966	LINE	L1Md_T	L1	chr2L1Md_T50455929	ProperStrand	1	1	-inf
chr5	146261265	146261347	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	5345957	5565134	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	6	-8.1981
chr2	20671940	20672030	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	chr2	66191776	66197760	protein_coding	Scn1a	intron	ENSMUSG00000064329	ProperStrand	19	1	-10.9746
chr5	110362897	110362997	protein_coding-noncoding	Gm15446	utr5	ENSMUSG00000090015	NonProperStrand	3	chr5	110363020	110363110	protein_coding	Gm15446	intron	ENSMUSG00000090015	NonProperStrand	24	3	-inf
chr1	89625979	89626027	LTR	MLT1H2	MaLR	chr1MLT1H289625981	NonProperStrand	1	chr9	123461957	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	118988499	118988591	LINE	Lx4A	L1	chr1Lx4A118988483	NonProperStrand	14	chr1	118988344	118988487	LTR	RLTR10	ERVK	chr1RLTR10118988054	NonProperStrand	6	4	-inf
chr7	27377908	27378905	LTR	MMETn-int	ERVK	chr7MMETn-int27377963	ProperStrand	9	chr7	27377809	27377909	LTR	RLTRETN_Mm	ERVK	chr7RLTRETN_Mm27377641	ProperStrand	9	9	-inf
chrX	74239723	74239837	LINE	Lx2	L1	chrXLx274239704	NonProperStrand	7	chr9	123461839	123461873	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-8.6448
chr11	32745365	32745396	LINE	L1MC5	L1	chr11L1MC532745248	NonProperStrand	1	chr13	38689133	38689247	protein_coding	Muted	intron	ENSMUSG00000038982	NonProperStrand	15	1	-inf
chr17	39846764	39846809	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	105216281	105216316	SINE	MIRb	MIR	chr11MIRb105216182	ProperStrand	2	1	-5.3533
chr2	63852246	63852274	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	chr17	34112911	34112976	pseudogene	H2-K2	.	ENSMUSG00000067203	ProperStrand	36	1	-12.5535
chr9	110281291	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr7	126797764	126799084	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-4.3922
chr6	112925067	112925167	DNA	Charlie1a	MER1_type	chr6Charlie1a112924759	ProperStrand	4	chr6	112925199	112925289	SINE	B3	B2	chr6B3112925177	NonProperStrand	4	4	-inf
chr17	39847120	39847220	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	119424465	119424555	lincRNA	1700020I14Rik	intron	ENSMUSG00000085438	NonProperStrand	7	1	-3.6430
chr7	28467266	28467356	SINE	ID_B1	B4	chr7ID_B128467224	ProperStrand	1	chr7	28467345	28467445	Simple_repeat	(GA)n	Simple_repeat	chr7(GA)n28467354	ProperStrand	1	1	-inf
chr5	146261004	146261068	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	136542621	136542708	protein_coding	Zbtb40	intron	ENSMUSG00000060862	NonProperStrand	45	3	-13.0854
chr5	131872947	131873037	LTR	ORR1E	MaLR	chr5ORR1E131872949	ProperStrand	1	chr5	131872852	131872952	SINE	B1F	Alu	chr5B1F131872848	ProperStrand	1	1	-inf
chr17	39847436	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	59261443	59262945	SINE	B4A	B4	chr19B4A59261379	NonProperStrand	2	2	-inf
chr8	91593001	91593057	LTR	RLTR42-int	ERVK	chr8RLTR42-int91592427	ProperStrand	6	chr8	91593339	91593436	LTR	RLTR42	ERVK	chr8RLTR4291593288	ProperStrand	6	1	-inf
chr5	6062632	6062722	LINE	L1ME2	L1	chr5L1ME26062598	ProperStrand	1	chr5	6062769	6062869	SINE	B3	B2	chr5B36062760	ProperStrand	1	1	-inf
chr6	94123825	94123878	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr1	58405686	58405725	protein_coding	Aox3l1	intron	ENSMUSG00000079554	ProperStrand	31	1	-7.6013
chr8	41257797	41257839	DNA	URR1B	MER1_type	chr8URR1B41257750	NonProperStrand	1	chr6	3201440	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr2	160905088	160905292	protein_coding	Chd6	intron	ENSMUSG00000057133	NonProperStrand	18	chr19	28340445	28340534	protein_coding	Glis3	intron	ENSMUSG00000091294	ProperStrand	10	1	-18.0265
chr17	39848274	39848297	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	86060856	86060889	protein_coding	Ints2	intron	ENSMUSG00000018068	ProperStrand	2	1	-8.4422
chr6	6530825	6530915	LINE	Lx8	L1	chr6Lx86530420	NonProperStrand	1	chr6	6531104	6531204	LINE	Lx8	L1	chr6Lx86530943	NonProperStrand	1	1	-inf
chr17	39846462	39846505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	35713326	35713415	lincRNA	Snhg4	intron	ENSMUSG00000090430	NonProperStrand	1	1	-inf
chr11	68760681	68762540	protein_coding-noncoding	Arhgef15	utr3	ENSMUSG00000052921	NonProperStrand	2	chr11	68752014	68760658	protein_coding	Arhgef15	intron	ENSMUSG00000052921	NonProperStrand	14	1	-19.5799
chr3	22179212	22179234	LINE	L1Md_F3	L1	chr3L1Md_F322177863	NonProperStrand	2	chr17	39846883	39846957	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	55004637	55004727	LINE	L1VL4	L1	chr17L1VL455004549	ProperStrand	1	chr13	74425336	74425436	protein_coding	Ahrr	intron	ENSMUSG00000021575	NonProperStrand	16	1	-inf
chr19	5802072	5802145	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr15	80791643	80791725	protein_coding-noncoding	Adsl	utr5	ENSMUSG00000022407	ProperStrand	1	1	-inf
chr6	122700701	122700791	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr10	122565788	122565888	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-10.0953
chr17	39847080	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	57563038	57587603	protein_coding	Edc3	intron	ENSMUSG00000038957	ProperStrand	18	2	-3.5608
chr13	21209431	21209521	SINE	B3	B2	chr13B321209447	NonProperStrand	1	chr13	21209088	21209188	SINE	ID_B1	B4	chr13ID_B121208957	ProperStrand	1	1	-inf
chr1	124951257	124951357	SINE	B1_Mur1	Alu	chr1B1_Mur1124951215	NonProperStrand	1	chr1	124951526	124951616	SINE	RSINE1	B4	chr1RSINE1124951509	NonProperStrand	1	1	-inf
chr14	75771766	75771866	LTR	MLT1F-int	MaLR	chr14MLT1F-int75771769	ProperStrand	1	chr14	75771562	75771652	LTR	RLTR13C2	ERVK	chr14RLTR13C275770966	ProperStrand	1	1	-inf
chr17	28053945	28054012	protein_coding	Anks1	intron	ENSMUSG00000024219	ProperStrand	72	chr17	28007935	28007992	protein_coding	Uhrf1bp1	intron	ENSMUSG00000039512	ProperStrand	171	1	-9.5552
chr7	66193945	66193964	LINE	L1Md_F2	L1	chr7L1Md_F266193083	NonProperStrand	1	chr3	144556948	144557056	protein_coding	Gm6289	intron	ENSMUSG00000074196	ProperStrand	31	1	-inf
chr14	27277446	27277506	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr16	56715061	56715111	protein_coding	Tfg	intron	ENSMUSG00000022757	ProperStrand	19	1	-12.0323
chr3	22080242	22080332	protein_coding	Tbl1xr1	intron	ENSMUSG00000027630	ProperStrand	100	chr12	79511899	79511999	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-5.9064
chr5	33506867	33506920	LINE	Lx8	L1	chr5Lx833506547	NonProperStrand	23	chr5	33496562	33500014	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	4	-20.0949
chr10	75003512	75003612	LINE	L1MEc	L1	chr10L1MEc75003413	ProperStrand	2	chr5	8444723	8444814	protein_coding	Slc25a40	intron	ENSMUSG00000054099	ProperStrand	50	2	-inf
chr17	25025616	25025649	protein_coding	Spsb3	intron	ENSMUSG00000024160	ProperStrand	2	chr17	25018919	25020616	protein_coding	Nubp2	intron	ENSMUSG00000039183	NonProperStrand	2	2	-inf
chr3	65947017	65947058	protein_coding	Veph1	intron	ENSMUSG00000027831	ProperStrand	30	chr2	5379242	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.9007
chr1	178314333	178314361	LINE	L1Md_F3	L1	chr1L1Md_F3178313782	ProperStrand	27	chrX	42217379	42221007	LINE	Lx2	L1	chrXLx242217269	NonProperStrand	1	1	-inf
chr9	48995791	48995891	DNA	MER63C	AcHobo	chr9MER63C48995690	ProperStrand	1	chr9	48995589	48995679	SINE	B4	B4	chr9B448995374	NonProperStrand	1	1	-inf
chr12	4891408	4894541	protein_coding	Ubxn2a	intron	ENSMUSG00000020634	ProperStrand	19	chr14	67686313	67686397	protein_coding	Ppp2r2a	intron	ENSMUSG00000022052	ProperStrand	54	1	-14.5645
chr17	84706681	84706736	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	chrX	153728899	153741056	protein_coding	Phex	intron	ENSMUSG00000057457	NonProperStrand	9	1	-13.8958
chr12	69158752	69159088	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	chr11	77541785	77545326	protein_coding	Nufip2	intron	ENSMUSG00000037857	NonProperStrand	22	1	-15.3358
chr17	33675797	33675869	protein_coding	Adamts10	intron	ENSMUSG00000024299	NonProperStrand	24	chr8	80817331	80817393	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-9.1293
chr10	20333061	20333130	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr19	9017727	9017786	protein_coding	Mta2	intron	ENSMUSG00000071646	ProperStrand	23	1	-10.6592
chr15	91484088	91484188	LTR	MTD	MaLR	chr15MTD91484046	ProperStrand	1	chr15	91483678	91483768	LTR	RLTR10B2	ERVK	chr15RLTR10B291483665	ProperStrand	1	1	-inf
chr11	54690584	54690610	LINE	L1MB7	L1	chr11L1MB754690486	ProperStrand	3	chr11	54690846	54690929	SINE	B1_Mus1	Alu	chr11B1_Mus154690849	ProperStrand	2	2	-inf
chr13	106936538	106936580	LINE	L1MA4A	L1	chr13L1MA4A106936129	NonProperStrand	4	chr13	106935249	106935300	LINE	Lx	L1	chr13Lx106935016	NonProperStrand	1	1	-inf
chr13	18731534	18731618	LTR	MT2_Mm	ERVL	chr13MT2_Mm18731108	NonProperStrand	1	chr15	91445659	91445677	LTR	MTB	MaLR	chr15MTB91445437	ProperStrand	1	1	-inf
chrX	64042585	64042675	LTR	MTE2a	MaLR	chrXMTE2a64042571	NonProperStrand	1	chrX	64042297	64042397	SINE	B3	B2	chrXB364042306	NonProperStrand	1	1	-inf
chr14	62818556	62818646	SINE	B3	B2	chr14B362818490	ProperStrand	1	chr14	62818892	62818992	SINE	B3	B2	chr14B362818801	ProperStrand	1	1	-inf
chr1	150403914	150403976	LINE	L1Md_T	L1	chr1L1Md_T150400406	ProperStrand	3	chr17	39846574	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr3	90208884	90208962	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	chr3	108441518	108441586	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	57	1	-13.5974
chr17	39846818	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	3809709	3809815	protein_coding	Slc35e4	intron	ENSMUSG00000048807	ProperStrand	4	1	-3.6552
chr17	39847069	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	19883802	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	25	-10.2443
chr3	126447925	126448027	protein_coding	Camk2d	intron	ENSMUSG00000053819	ProperStrand	3	chr17	33823067	33824340	protein_coding	Hnrnpm	utr5	ENSMUSG00000059208	ProperStrand	59	2	-20.6885
chr12	100407665	100407744	LTR	MTEa	MaLR	chr12MTEa100407663	ProperStrand	1	chr17	39847845	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	54919846	54919899	LTR	RMER19B	ERVK	chr14RMER19B54919511	NonProperStrand	1	chr17	39846450	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	105875837	105875937	LINE	L1Md_F2	L1	chrXL1Md_F2105875846	NonProperStrand	6	chrX	105875470	105875560	LINE	MusHAL1	L1	chrXMusHAL1105875349	NonProperStrand	5	1	-inf
chr6	3201473	3201540	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chrX	93040105	93040128	protein_coding	Zc3h12b	intron	ENSMUSG00000035045	ProperStrand	5	1	-7.8442
chr17	39847844	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	31778195	31778290	LTR	IAPLTR2a	ERVK	chr18IAPLTR2a31777970	NonProperStrand	1	1	-inf
chr11	9743709	9743809	LTR	RLTR9A	ERVK	chr11RLTR9A9743583	ProperStrand	1	chr11	9397715	9397805	protein_coding	Abca13	intron	ENSMUSG00000004668	NonProperStrand	14	1	-inf
chr9	106443057	106443147	LINE	L1MB7	L1	chr9L1MB7106443032	ProperStrand	1	chr1	128144181	128144281	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	1	-inf
chr7	135573759	135573866	LINE	Lx6	L1	chr7Lx6135572662	NonProperStrand	1	chr5	114852018	114852036	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr19	6380645	6380745	LINE	Lx8	L1	chr19Lx86380604	ProperStrand	1	chr19	6380370	6380459	SINE	B4	B4	chr19B46380389	ProperStrand	1	1	-inf
chr6	124741223	124741249	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr16	31005024	31005139	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	1	-12.0137
chrY	2033612	2033702	LTR	IAPEz-int	ERVK	chrYIAPEz-int2033321	NonProperStrand	1	chrY	2033173	2033273	LTR	IAPLTR1_Mm	ERVK	chrYIAPLTR1_Mm2032955	NonProperStrand	1	1	-inf
chr1	133132899	133132943	protein_coding	Rassf5	intron	ENSMUSG00000026430	NonProperStrand	55	chr10	127484074	127484170	protein_coding	Naca	intron	ENSMUSG00000061315	ProperStrand	14	2	-20.5111
chr7	87981978	87982078	SINE	B1_Mm	Alu	chr7B1_Mm87981936	ProperStrand	1	chr7	87981797	87981887	SINE	B4	B4	chr7B487981786	ProperStrand	1	1	-inf
chr2	5379276	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr15	71804262	71804279	protein_coding	Col22a1	exon	ENSMUSG00000079022	ProperStrand	7	1	-8.8922
chr2	166254284	166254336	Simple_repeat	(TTC)n	Simple_repeat	chr2(TTC)n166254202	NonProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr7	46524531	46524638	LINE	Lx6	L1	chr7Lx646522875	NonProperStrand	1	chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	16312097	16312176	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	chr9	72687007	72687061	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-6.4581
chr2	145752028	145752060	protein_coding	Crnkl1	intron	ENSMUSG00000001767	ProperStrand	1	chr17	56614032	56614167	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	1	-inf
chr3	105736361	105736432	LINE	L1_Mus1	L1	chr3L1_Mus1105736227	ProperStrand	1	chr3	105732595	105732671	protein_coding	I830077J02Rik	intron	ENSMUSG00000074342	ProperStrand	3	1	-inf
chr17	39847281	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	67805569	67805645	LTR	ORR1D2	MaLR	chr8ORR1D267805529	NonProperStrand	1	1	-inf
chr13	62698349	62698451	LTR	MT2A	ERVL	chr13MT2A62698258	ProperStrand	1	chr12	76920454	76920481	protein_coding	Syne2	intron	ENSMUSG00000063450	ProperStrand	35	1	-inf
chr15	76904321	76904428	SINE	B1F	Alu	chr15B1F76904336	ProperStrand	5	chr3	103107566	103107593	protein_coding	Trim33	intron	ENSMUSG00000033014	ProperStrand	59	1	-17.2748
chr1	137113216	137113306	SINE	B1_Mur1	Alu	chr1B1_Mur1137113203	ProperStrand	1	chr1	137113430	137113530	SINE	B3A	B2	chr1B3A137113348	NonProperStrand	1	1	-inf
chr18	10052132	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	5	chr2	71389253	71389945	LTR	RMER17C	ERVK	chr2RMER17C71388918	NonProperStrand	7	1	-21.1751
chr6	97497316	97497424	protein_coding	Frmd4b	intron	ENSMUSG00000030064	ProperStrand	32	chr6	97497464	97497492	snoRNA	ENSMUSG00000064724_SNORA63	.	ENSMUSG00000064724	ProperStrand	1	1	-inf
chr17	39847249	39847341	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	157179186	157179202	protein_coding-noncoding	Xpr1	utr3	ENSMUSG00000026469	ProperStrand	1	1	-inf
chr5	137332619	137332638	protein_coding	Emid2	intron	ENSMUSG00000004415	NonProperStrand	19	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-10.1727
chr11	97781636	97781712	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-13.5740
chr8	69770110	69770146	LTR	RLTR47_MM	ERV1	chr8RLTR47_MM69769749	NonProperStrand	2	chr5	115490351	115490397	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	2	-inf
chr17	39847746	39847867	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	86985246	86985262	SINE	B3	B2	chr4B386985233	ProperStrand	10	2	-3.6759
chr1	5616996	5617017	LTR	LTR50	ERVL	chr1LTR505616973	ProperStrand	1	chr7	97662079	97662168	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-inf
chr11	20023417	20023456	LTR	RMER17B	ERVK	chr11RMER17B20022695	ProperStrand	3	chr12	103419425	103419474	protein_coding	Slc24a4	intron	ENSMUSG00000041771	NonProperStrand	43	1	-19.2039
chr3	122588896	122588931	lincRNA	4933405D12Rik	intron	ENSMUSG00000086397	ProperStrand	31	chr3	69388740	69388852	protein_coding	B3galnt1	intron	ENSMUSG00000043300	NonProperStrand	15	1	-16.1867
chr11	69670614	69670668	protein_coding	Tnk1	utr5	ENSMUSG00000001583	ProperStrand	269	chr6	116101582	116101626	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	1	-9.0506
chr13	119691353	119691466	SINE	B3A	B2	chr13B3A119691346	ProperStrand	1	chr3	86547275	86547292	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-inf
chr17	74294559	74294617	protein_coding	Xdh	intron	ENSMUSG00000024066	ProperStrand	20	chr5	143109229	143109269	protein_coding	Wipi2	intron	ENSMUSG00000029578	NonProperStrand	16	1	-16.9430
chr17	10561502	10561592	SINE	B4A	B4	chr17B4A10561432	NonProperStrand	3	chr17	10561616	10561716	SINE	B4A	B4	chr17B4A10561601	NonProperStrand	3	3	-inf
chr17	39848486	39848510	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	34774129	34774163	LTR	ORR1A4	MaLR	chr2ORR1A434773889	NonProperStrand	6	1	-6.0469
chr15	77122708	77122738	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	chr6	83977151	83977267	protein_coding	Dysf	intron	ENSMUSG00000033788	ProperStrand	55	1	-10.4264
chr12	28746611	28746664	LINE	L1MC3	L1	chr12L1MC328746098	ProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr5	8458081	8458160	LINE	L1_Mur1	L1	chr5L1_Mur18457824	NonProperStrand	1	chrX	161213925	161213942	LINE	L1Md_F2	L1	chrXL1Md_F2161212357	ProperStrand	1	1	-inf
chr16	34954312	34954331	protein_coding	Mylk	intron	ENSMUSG00000022836	NonProperStrand	1	chr1	161241641	161241722	protein_coding	Rfwd2	intron	ENSMUSG00000040782	NonProperStrand	36	1	-inf
chr15	53266191	53266291	LINE	L1_Mur3	L1	chr15L1_Mur353265998	ProperStrand	3	chr15	53266287	53266377	Other	RMER1B	Other	chr15RMER1B53266280	ProperStrand	3	2	-20.2273
chr17	4082728	4082818	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chrX	80763934	80764034	protein_coding	Dmd	intron	ENSMUSG00000045103	NonProperStrand	39	1	-11.7294
chr8	106171845	106171945	LTR	ORR1A3	MaLR	chr8ORR1A3106171778	ProperStrand	1	chr8	106171604	106171694	SINE	B3	B2	chr8B3106171550	ProperStrand	1	1	-inf
chr12	32184372	32184472	protein_coding	Cbll1	utr5	ENSMUSG00000020659	NonProperStrand	1	chr18	57546622	57546712	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	1	-inf
chr7	141448744	141451100	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	188	chr7	141447974	141448769	SINE	PB1D10	Alu	chr7PB1D10141447926	NonProperStrand	38	23	-inf
chr19	44305105	44305238	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	chr9	104975129	104975146	protein_coding	Mrpl3	intron	ENSMUSG00000032563	ProperStrand	5	1	-15.0069
chr1	132504021	132504092	protein_coding	Zp3r	intron	ENSMUSG00000042554	NonProperStrand	56	chr13	97190579	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.2564
chr6	49236476	49236576	SINE	B1_Mm	Alu	chr6B1_Mm49236504	ProperStrand	1	chr17	70963688	70963778	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	1	-inf
chr17	39847863	39847896	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	19627952	19627995	LTR	LTR16B	ERVL	chr3LTR16B19627856	NonProperStrand	1	1	-inf
chr4	85215613	85215657	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	chr18	37638020	37638131	protein_coding	Pcdhb16	exon	ENSMUSG00000047910	NonProperStrand	4	1	-16.3451
chr12	100912715	100912772	LINE	L1Md_F2	L1	chr12L1Md_F2100912655	NonProperStrand	2	chr17	39846766	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr15	82353551	82353629	LINE	L1_Mus1	L1	chr15L1_Mus182350946	ProperStrand	4	chr17	39847102	39847163	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr12	19247915	19247963	LTR	MTD-int	MaLR	chr12MTD-int19247720	ProperStrand	1	chr19	37022785	37022802	protein_coding	Btaf1	intron	ENSMUSG00000040565	ProperStrand	12	1	-inf
chr6	132149538	132149638	LTR	MLT-int	MaLR	chr6MLT-int132149416	ProperStrand	1	chr6	132149666	132149756	SINE	B1_Mus2	Alu	chr6B1_Mus2132149669	NonProperStrand	1	1	-inf
chr11	100502043	100502102	protein_coding	Zfp385c	intron	ENSMUSG00000014198	ProperStrand	87	chr1	37488743	37488792	protein_coding	Unc50	intron	ENSMUSG00000026111	NonProperStrand	7	2	-21.4794
chr12	116395440	116395530	LINE	L1_Mur2	L1	chr12L1_Mur2116395462	NonProperStrand	3	chr12	116395338	116395438	LINE	Lx2B	L1	chr12Lx2B116395170	NonProperStrand	4	3	-inf
chr4	27266236	27266336	LINE	L1Md_F2	L1	chr4L1Md_F227266164	NonProperStrand	1	chr4	27266618	27266708	LINE	Lx2B	L1	chr4Lx2B27266308	NonProperStrand	1	1	-inf
chr5	8977569	8978243	protein_coding	Crot	exon	ENSMUSG00000003623	ProperStrand	5	chr9	123462076	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr9	110281296	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr15	81914817	81914941	protein_coding	Mei1	intron	ENSMUSG00000068117	NonProperStrand	96	2	-10.7018
chr8	111814845	111814901	LTR	MTC	MaLR	chr8MTC111814515	ProperStrand	2	chr8	111815236	111815314	LTR	ORR1A2	MaLR	chr8ORR1A2111815203	NonProperStrand	5	1	-inf
chr13	112578195	112578295	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr16	33556819	33556909	protein_coding	Slc12a8	intron	ENSMUSG00000035506	ProperStrand	102	1	-3.2226
chr19	5801978	5802068	lincRNA	Malat1	exon	ENSMUSG00000092341	NonProperStrand	13	chr9	64997242	64997342	protein_coding	Igdcc3	intron	ENSMUSG00000032394	ProperStrand	4	1	-inf
chr5	30060642	30060732	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chrX	71298389	71298489	protein_coding	Mecp2	intron	ENSMUSG00000031393	NonProperStrand	9	1	-17.5044
chr9	121311220	121311314	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	242	chr1	52911419	52911484	protein_coding	Hibch	intron	ENSMUSG00000041426	NonProperStrand	34	1	-10.3727
chr16	87483798	87483836	protein_coding	Cct8	utr3	ENSMUSG00000025613	ProperStrand	46	chr16	87483411	87483533	protein_coding	Usp16	utr3	ENSMUSG00000025616	NonProperStrand	4	1	-18.4053
chr17	39847388	39847417	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	8931496	8931515	protein_coding	Sun3	exon	ENSMUSG00000040985	ProperStrand	1	1	-inf
chr16	29637086	29637127	protein_coding	Opa1	intron	ENSMUSG00000038084	ProperStrand	37	chr7	51848060	51848082	protein_coding	Kcnc3	intron	ENSMUSG00000062785	NonProperStrand	1	1	-inf
chr12	17469408	17469498	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int17468429	NonProperStrand	1	chr12	17469795	17469895	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int17469512	NonProperStrand	1	1	-inf
chr14	54912111	54912300	LTR	RLTR4_Mm	ERV1	chr14RLTR4_Mm54912047	ProperStrand	1	chr14	54912369	54912459	LTR	RLTR4_Mm	ERV1	chr14RLTR4_Mm54912318	ProperStrand	1	1	-inf
chr5	65477916	65477950	protein_coding	Tmem156	intron	ENSMUSG00000037913	ProperStrand	14	chr6	93922080	93922175	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-9.2207
chr19	61174799	61174898	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	NonProperStrand	3	chr16	94180869	94180888	protein_coding	Sim2	intron	ENSMUSG00000062713	NonProperStrand	112	1	-17.1554
chr11	8652472	8652527	LINE	L1_Mus1	L1	chr11L1_Mus18652439	NonProperStrand	1	chr11	8637474	8637522	LTR	MMETn-int	ERVK	chr11MMETn-int8634961	ProperStrand	6	1	-inf
chr5	120487675	120487741	LTR	RMER19B	ERVK	chr5RMER19B120487612	ProperStrand	2	chr9	123462087	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chrX	42237007	42237082	LTR	ORR1D1	MaLR	chrXORR1D142236792	ProperStrand	4	chr1	194659538	194659623	protein_coding	A730013G03Rik	exon	ENSMUSG00000047384	NonProperStrand	5	4	-inf
chr10	13468142	13468208	protein_coding	Aig1	intron	ENSMUSG00000019806	ProperStrand	18	chr18	37881174	37881245	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	1	-13.2141
chr9	116836716	116836806	protein_coding	Rbms3	intron	ENSMUSG00000039607	NonProperStrand	19	chr16	26977517	26977617	protein_coding	Gm606	intron	ENSMUSG00000068428	NonProperStrand	1	1	-inf
chr7	78902353	78902478	LINE	L1MEg	L1	chr7L1MEg78902300	NonProperStrand	3	chr9	123461991	123462015	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-inf
chr11	53890328	53890428	LTR	MTA_Mm-int	MaLR	chr11MTA_Mm-int53890233	NonProperStrand	3	chr11	53879405	53879495	protein_coding	Pdlim4	intron	ENSMUSG00000020388	ProperStrand	6	3	-inf
chr11	73083068	73083091	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	chr18	77121835	77121973	protein_coding	Skor2	intron	ENSMUSG00000091519	ProperStrand	55	2	-19.9657
chr2	67951935	67951969	protein_coding	B3galt1	intron	ENSMUSG00000034780	ProperStrand	5	chr8	126944845	126944940	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-15.9038
chr4	136970344	136970434	LTR	RLTR31_Mur	ERVK	chr4RLTR31_Mur136969873	NonProperStrand	1	chr4	136970588	136970688	SINE	B2_Mm2	B2	chr4B2_Mm2136970509	ProperStrand	1	1	-inf
chr11	94765988	94766078	LINE	L1M5	L1	chr11L1M594765725	ProperStrand	1	chr11	94753815	94753915	SINE	B4A	B4	chr11B4A94753759	ProperStrand	1	1	-inf
chr17	39846965	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	116250947	116251060	LTR	MT2A	ERVL	chr7MT2A116250962	NonProperStrand	4	1	-3.6552
chr2	144263712	144263759	LTR	ORR1B1	MaLR	chr2ORR1B1144263688	NonProperStrand	2	chr4	83456405	83456509	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-17.2006
chr15	47091316	47091406	LINE	Lx3_Mus	L1	chr15Lx3_Mus47090325	NonProperStrand	1	chr15	47091628	47091728	LINE	Lx3_Mus	L1	chr15Lx3_Mus47091513	ProperStrand	1	1	-inf
chr7	101934119	101934186	LINE	L1_Mur2	L1	chr7L1_Mur2101933959	ProperStrand	1	chr9	59668982	59669009	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr1	194680398	194680498	protein_coding-noncoding	Sertad4	utr3	ENSMUSG00000016262	NonProperStrand	1	chr1	194679309	194679399	protein_coding	Sertad4	intron	ENSMUSG00000016262	NonProperStrand	1	1	-inf
chr6	9835226	9835326	LINE	L1Md_F	L1	chr6L1Md_F9830864	NonProperStrand	1	chr6	9835359	9835449	LINE	L1_Mus2	L1	chr6L1_Mus29835344	ProperStrand	1	1	-inf
chr17	39847981	39848034	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	51464520	51465224	SINE	B1_Mur4	Alu	chr6B1_Mur451465128	NonProperStrand	6	2	-5.2646
chr12	99645570	99645668	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr17	26283577	26283621	protein_coding	Axin1	intron	ENSMUSG00000024182	ProperStrand	20	1	-14.3229
chr4	54018006	54018106	Other	RMER1A	Other	chr4RMER1A54017998	ProperStrand	1	chr4	54017869	54017959	Other	RMER1B	Other	chr4RMER1B54017453	ProperStrand	1	1	-inf
chr16	23259838	23259928	protein_coding	St6gal1	intron	ENSMUSG00000022885	ProperStrand	43	chr4	107554280	107554381	protein_coding	Magoh	intron	ENSMUSG00000028609	ProperStrand	1	1	-inf
chr15	54683026	54683116	protein_coding	Enpp2	intron	ENSMUSG00000022425	NonProperStrand	2	chr14	33967408	33967508	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-18.1493
chr2	16686806	16686871	LINE	L1Md_T	L1	chr2L1Md_T16684295	NonProperStrand	3	chr2	29923767	29923799	protein_coding	Set	intron	ENSMUSG00000054766	ProperStrand	44	1	-19.0086
chr11	72848666	72848700	protein_coding	Camkk1	intron	ENSMUSG00000020785	ProperStrand	3	chr8	25855994	25856113	protein_coding	Adam5	intron	ENSMUSG00000031554	NonProperStrand	5	2	-inf
chr7	110342505	110342558	LINE	Lx7	L1	chr7Lx7110342400	NonProperStrand	5	chr9	123461931	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr3	8981501	8981537	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	chr7	141191161	141191187	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-6.7535
chr19	40697515	40697605	protein_coding	Entpd1	intron	ENSMUSG00000048120	NonProperStrand	3	chr19	40697340	40697441	pseudogene	Gm8783	.	ENSMUSG00000089954	NonProperStrand	1	1	-inf
chr1	118521508	118521593	LINE	Lx3_Mus	L1	chr1Lx3_Mus118520777	NonProperStrand	7	chr19	5422664	5422684	protein_coding-noncoding	4930481A15Rik	utr5	ENSMUSG00000086938	ProperStrand	1	1	-inf
chr17	22353270	22353333	LINE	L1_Mus1	L1	chr17L1_Mus122350424	NonProperStrand	1	chr2	10084971	10085006	protein_coding	Itih5	intron	ENSMUSG00000025780	ProperStrand	23	1	-inf
chr14	18737713	18737822	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr19	24178897	24178936	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	127	1	-8.4555
chr7	55411456	55411546	LINE	Lx9	L1	chr7Lx955411416	NonProperStrand	1	chr14	79861214	79861314	protein_coding	Wbp4	utr3	ENSMUSG00000022023	NonProperStrand	30	1	-inf
chrX	77446125	77446215	LINE	MusHAL1	L1	chrXMusHAL177445898	NonProperStrand	1	chrX	77446448	77446548	LINE	MusHAL1	L1	chrXMusHAL177446125	NonProperStrand	1	1	-inf
chr16	35784654	35784768	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	chr1	189126292	189126312	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-10.6855
chr2	180687793	180688923	protein_coding	Nkain4	intron	ENSMUSG00000027574	ProperStrand	35	chr11	22855998	22856044	protein_coding	Commd1	intron	ENSMUSG00000051355	ProperStrand	127	1	-11.6050
chr15	58960832	58960932	SINE	B3	B2	chr15B358960772	ProperStrand	2	chr15	58960972	58961062	SINE	RSINE1	B4	chr15RSINE158960982	NonProperStrand	3	2	-inf
chr11	109011791	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	28001233	28001332	LINE	Lx9	L1	chr15Lx928001141	ProperStrand	1	1	-inf
chr11	109011651	109011700	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	68945285	68945317	protein_coding	Lass6	intron	ENSMUSG00000027035	ProperStrand	71	1	-5.7687
chr9	110504527	110504583	protein_coding	Setd2	intron	ENSMUSG00000044791	ProperStrand	5	chr8	122926099	122926155	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-11.3494
chr11	118332473	118332573	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n118332407	NonProperStrand	1	chr11	118332584	118332674	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n118332592	NonProperStrand	1	1	-inf
chr6	3201470	3201539	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	102884818	102884835	lincRNA	Gm17536	intron	ENSMUSG00000091056	ProperStrand	10	1	-6.3611
chrX	42827590	42827680	LINE	L1Md_F3	L1	chrXL1Md_F342827575	NonProperStrand	1	chrX	42827756	42827856	LINE	L1_Mm	L1	chrXL1_Mm42827764	ProperStrand	1	1	-inf
chr16	94588542	94592254	protein_coding	Pigp	utr5	ENSMUSG00000022940	NonProperStrand	42	chr16	94592324	94603854	protein_coding	Ttc3	utr5	ENSMUSG00000040785	ProperStrand	131	3	-inf
chr15	35783127	35783176	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	chr5	20915417	20915437	protein_coding	Ccdc146	intron	ENSMUSG00000064280	ProperStrand	82	1	-9.8736
chr7	80028440	80028510	LINE	L1Md_F2	L1	chr7L1Md_F280027465	NonProperStrand	30	chr7	80035109	80035170	LINE	L3	CR1	chr7L380035020	NonProperStrand	11	1	-16.8917
chr13	63905083	63905100	LINE	L2a	L2	chr13L2a63905064	NonProperStrand	1	chr17	39847440	39847498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	11509345	11509460	protein_coding	Carkd	exon	ENSMUSG00000031505	ProperStrand	13	chr11	113300181	113300298	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-12.0939
chr9	46177964	46178499	LINE	Lx8	L1	chr9Lx846177721	NonProperStrand	9	chr9	46155466	46177887	LTR	MTD	MaLR	chr9MTD46155272	ProperStrand	2	2	-inf
chr1	167226115	167226179	LINE	L2	L2	chr1L2167226097	ProperStrand	1	chr17	39846460	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	122158983	122159027	SINE	B3	B2	chr5B3122158968	ProperStrand	1	chr11	6467860	6467920	protein_coding	Ccm2	intron	ENSMUSG00000000378	NonProperStrand	28	1	-inf
chr1	49985605	49985695	LINE	Lx2B	L1	chr1Lx2B49984369	NonProperStrand	1	chr1	49985733	49985833	LINE	MusHAL1	L1	chr1MusHAL149985672	NonProperStrand	1	1	-inf
chr17	39846167	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	195014400	195014465	antisense	Gm15872	.	ENSMUSG00000090080	ProperStrand	3	1	-4.3017
chr7	26557846	26557863	protein_coding	Axl	intron	ENSMUSG00000002602	ProperStrand	3	chr11	87461927	87462031	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-14.9081
chr3	119096546	119096636	protein_coding	Dpyd	intron	ENSMUSG00000033308	NonProperStrand	32	chr4	36280956	36281056	protein_coding	Lingo2	intron	ENSMUSG00000045083	NonProperStrand	34	1	-14.4439
chr17	39847963	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	95762989	95763005	LTR	MTE-int	MaLR	chr8MTE-int95762871	ProperStrand	1	1	-inf
chr1	168401595	168401613	LINE	L1Md_T	L1	chr1L1Md_T168401020	NonProperStrand	1	chr16	32231269	32231405	protein_coding	Fbxo45	utr3	ENSMUSG00000035764	ProperStrand	22	1	-inf
chrX	13130336	13132079	protein_coding-noncoding	Cask	utr3	ENSMUSG00000031012	NonProperStrand	4	chrX	13130293	13132176	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	4	-inf
chr2	100278681	100278781	LINE	Lx5	L1	chr2Lx5100278367	NonProperStrand	1	chr2	100279374	100279464	LINE	Lx5	L1	chr2Lx5100279171	NonProperStrand	1	1	-inf
chr8	69864996	69865058	LINE	L1Md_F2	L1	chr8L1Md_F269864958	NonProperStrand	2	chr9	37315505	37315534	protein_coding	BC024479	intron	ENSMUSG00000042138	NonProperStrand	16	1	-inf
chr17	39847177	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	142498621	142501359	LTR	MTEa-int	MaLR	chr6MTEa-int142498286	ProperStrand	3	1	-5.4882
chr12	103286185	103286275	LINE	L1MB4	L1	chr12L1MB4103285975	ProperStrand	1	chr12	103286498	103286598	LTR	ORR1E	MaLR	chr12ORR1E103286414	NonProperStrand	1	1	-inf
chr10	17928138	17928161	LTR	MLT1F2	MaLR	chr10MLT1F217928096	ProperStrand	2	chr10	17921506	17921608	LTR	RMER13A	ERVK	chr10RMER13A17921354	NonProperStrand	5	2	-inf
chr2	60959794	60959816	Simple_repeat	(ATTTG)n	Simple_repeat	chr2(ATTTG)n60959797	NonProperStrand	1	chr14	21486380	21486447	protein_coding	Synpo2l	intron	ENSMUSG00000039376	NonProperStrand	44	1	-inf
chr7	71873230	71873251	protein_coding	Apba2	intron	ENSMUSG00000030519	ProperStrand	2	chr2	5379307	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr16	8690944	8691001	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr2	121746935	121746982	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-8.1399
chrX	74079397	74080058	LINE	L1Md_T	L1	chrXL1Md_T74079404	ProperStrand	5	chr17	28429303	28429323	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	1	-16.1010
chr4	126417328	126429296	DNA	MER5A	MER1_type	chr4MER5A126417327	ProperStrand	7	chr4	126429336	126429426	protein_coding	Ncdn	intron	ENSMUSG00000028833	ProperStrand	8	7	-inf
chr5	74386530	74386564	LINE	Lx7	L1	chr5Lx774386438	ProperStrand	1	chr17	35882482	35882589	lincRNA	Gm20442	intron	ENSMUSG00000092600	NonProperStrand	38	1	-inf
chr7	136995072	136995144	LINE	Lx3_Mus	L1	chr7Lx3_Mus136994189	NonProperStrand	2	chr7	136977822	136977895	SINE	ID_B1	B4	chr7ID_B1136977764	NonProperStrand	5	1	-inf
chr3	95650928	95651028	protein_coding	Prpf3	intron	ENSMUSG00000015748	ProperStrand	8	chr5	132460148	132460238	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-11.3317
chr6	148206506	148206562	protein_coding	Tmtc1	intron	ENSMUSG00000030306	ProperStrand	64	chr5	100062080	100062166	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	NonProperStrand	55	1	-12.0678
chr11	109011660	109011716	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	116387553	116387599	LINE	L1_Mus4	L1	chr12L1_Mus4116386755	NonProperStrand	1	1	-inf
chr17	39847479	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	35262903	35263841	protein_coding	Fam180a	utr3	ENSMUSG00000047420	NonProperStrand	4	2	-6.7714
chr18	54699170	54699202	Simple_repeat	(TGGA)n	Simple_repeat	chr18(TGGA)n54699160	NonProperStrand	11	chr1	34156820	34156871	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-10.2319
chr17	28701503	28701539	LTR	ETnERV2-int	ERVK	chr17ETnERV2-int28701484	NonProperStrand	2	chr17	39846415	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	96242133	96242223	LTR	RLTR31_Mur	ERVK	chr5RLTR31_Mur96241630	ProperStrand	3	chr5	96242283	96242383	LTR	RMER3D-int	ERVK	chr5RMER3D-int96242198	ProperStrand	2	1	-20.2824
chr11	96800925	96801456	lincRNA	D030028A08Rik	exon	ENSMUSG00000078700	ProperStrand	59	chr2	5379296	5379336	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.5804
chr9	123461931	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	148990231	149044546	protein_coding	Dennd5b	exon	ENSMUSG00000030313	ProperStrand	36	2	-3.7021
chr10	80055944	80056220	LINE	L1_Mus2	L1	chr10L1_Mus280055822	ProperStrand	3	chr10	80054606	80054747	SINE	B1F	Alu	chr10B1F80054703	NonProperStrand	3	1	-20.2168
chr1	150598363	150598379	LTR	RMER6C	ERVK	chr1RMER6C150598276	ProperStrand	1	chr17	46265006	46265124	protein_coding	Rsph9	intron	ENSMUSG00000023966	ProperStrand	32	1	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr17	56919964	56926999	protein_coding	Rfx2	intron	ENSMUSG00000024206	ProperStrand	21	1	-14.2573
chr12	67667903	67668003	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	chr8	60587487	60587577	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-9.1806
chr5	146261044	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	103982357	103982459	protein_coding	Magi3	intron	ENSMUSG00000052539	NonProperStrand	69	1	-4.7926
chr16	4045313	4045331	protein_coding	Trap1	intron	ENSMUSG00000005981	NonProperStrand	1	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-inf
chr5	30060673	30060763	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	chr1	177239634	177239734	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	1	-13.0959
chr17	66404969	66405069	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	chr18	75395029	75395119	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-5.2429
chr15	80691917	80692017	protein_coding	Tnrc6b	intron	ENSMUSG00000047888	NonProperStrand	3	chr15	80092825	80092915	protein_coding	Rps19bp1	intron	ENSMUSG00000051518	NonProperStrand	14	1	-20.0603
chr3	98339826	98339916	LINE	L1_Mm	L1	chr3L1_Mm98339264	ProperStrand	5	chr17	39846823	39847011	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.8332
chr7	28368724	28370089	LINE	Lx6	L1	chr7Lx628368829	ProperStrand	2	chr5	36000398	36000414	protein_coding	Htra3	intron	ENSMUSG00000029096	ProperStrand	6	2	-inf
chr17	39847277	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	102029104	102029122	SINE	B1_Mur1	Alu	chr15B1_Mur1102029067	ProperStrand	2	1	-6.5615
chr17	39847441	39847460	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	96464007	96464045	protein_coding	Itga10	intron	ENSMUSG00000090210	NonProperStrand	3	1	-4.3512
chr12	100439142	100439256	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	chr9	95743299	95743342	protein_coding	Pls1	intron	ENSMUSG00000049493	ProperStrand	6	2	-inf
chr14	37646942	37647032	LINE	L1MEg	L1	chr14L1MEg37646479	ProperStrand	1	chr14	37647029	37647129	LINE	L1MEg	L1	chr14L1MEg37647045	ProperStrand	1	1	-inf
chr13	109657575	109657625	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr7	92900684	92900762	protein_coding	Vmn2r72-ps	intron	ENSMUSG00000051877	NonProperStrand	9	1	-11.8606
chr5	119240362	119240462	LTR	ORR1D2	MaLR	chr5ORR1D2119240378	NonProperStrand	1	chr5	119240546	119240636	SINE	B2_Mm2	B2	chr5B2_Mm2119240507	ProperStrand	1	1	-inf
chr9	72498639	72498729	SINE	B2_Mm1t	B2	chr9B2_Mm1t72498615	ProperStrand	1	chr9	72498775	72498875	SINE	B2_Mm2	B2	chr9B2_Mm272498804	NonProperStrand	1	1	-inf
chr5	146261174	146261223	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	76414295	76421193	protein_coding	Adck5	intron	ENSMUSG00000022550	ProperStrand	25	1	-6.7922
chr11	53123667	53123741	SINE	B3A	B2	chr11B3A53123591	NonProperStrand	1	chr9	123461822	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	132338077	132338109	protein_coding	BC013712	utr3	ENSMUSG00000037731	ProperStrand	63	chr14	29119134	29119156	protein_coding	Erc2	intron	ENSMUSG00000040640	NonProperStrand	19	1	-14.2570
chr10	128083990	128084068	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	114	chr18	61156645	61156713	protein_coding	Slc6a7	intron	ENSMUSG00000052026	ProperStrand	11	1	-14.2012
chr13	21914844	21914938	LTR	RMER16-int	ERVK	chr13RMER16-int21914594	ProperStrand	5	chr15	47539992	47540055	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-15.3376
chr17	39843368	39843487	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr15	82609990	82610008	protein_coding	Gm5062	exon	ENSMUSG00000058613	ProperStrand	1	1	-inf
chr8	109672534	109672577	LINE	L1Md_F2	L1	chr8L1Md_F2109672259	ProperStrand	3	chr17	39847440	39847533	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39847636	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	79627118	79627183	LTR	ETnERV3-int	ERVK	chrXETnERV3-int79626966	ProperStrand	1	1	-inf
chr11	58207268	58207333	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n58207197	ProperStrand	1	chr11	58206884	58206939	pseudogene	Gm12251	.	ENSMUSG00000084384	NonProperStrand	1	1	-inf
chr9	65974419	65974519	protein_coding	Fam96a	utr5	ENSMUSG00000032381	ProperStrand	2	chr9	65974269	65974359	protein_coding	Snx1	utr5	ENSMUSG00000032382	NonProperStrand	10	2	-inf
chr17	39848099	39848118	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	51737776	51737842	SINE	B3	B2	chr11B351737669	NonProperStrand	1	1	-inf
chr19	6910185	6910231	protein_coding	Rps6ka4	intron	ENSMUSG00000024952	ProperStrand	19	chr9	59663340	59663406	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-8.5971
chrX	159107900	159107990	LINE	L1Md_A	L1	chrXL1Md_A159106679	ProperStrand	1	chrX	157322486	157322586	protein_coding	Cdkl5	intron	ENSMUSG00000031292	NonProperStrand	9	1	-inf
chr8	111818196	111818271	LINE	L1Md_F3	L1	chr8L1Md_F3111816267	ProperStrand	5	chr12	67667922	67667995	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-16.7504
chr1	161035849	161035912	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr2	129687594	129687610	LTR	RMER15	ERVL	chr2RMER15129687173	NonProperStrand	1	1	-inf
chr9	123462101	123462140	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr12	22024501	22024591	pseudogene	Gm9282	.	ENSMUSG00000092226	ProperStrand	10	1	-4.3847
chr14	120373229	120373279	SINE	B3A	B2	chr14B3A120373126	ProperStrand	1	chr15	99774148	99774201	protein_coding	1700030F18Rik	exon	ENSMUSG00000045350	ProperStrand	53	1	-inf
chr9	86140850	86140868	LINE	Lx7	L1	chr9Lx786139706	NonProperStrand	1	chr2	5379342	5379370	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chrX	73798212	73798255	LINE	L1Md_T	L1	chrXL1Md_T73798123	ProperStrand	3	chr17	39846581	39846614	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr13	47400608	47400708	DNA	MER5A	MER1_type	chr13MER5A47400552	ProperStrand	1	chr13	47401062	47401152	LINE	Lx	L1	chr13Lx47400975	ProperStrand	1	1	-inf
chr12	78350926	78351006	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	114035913	114035975	protein_coding	Wscd2	intron	ENSMUSG00000063430	ProperStrand	7	2	-16.4376
chr1	34652121	34652211	LTR	MT2A	ERVL	chr1MT2A34651821	ProperStrand	1	chr1	34652255	34652355	LTR	ORR1C2	MaLR	chr1ORR1C234652265	NonProperStrand	1	1	-inf
chr14	25751036	25751172	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n25751036	ProperStrand	1	chr3	108629145	108629162	protein_coding	Stxbp3a	intron	ENSMUSG00000027882	NonProperStrand	12	1	-inf
chr10	81126947	81127047	Satellite	MMSAT4	Satellite	chr10MMSAT481126847	ProperStrand	3	chr10	81126853	81126944	protein_coding	Gm10778	exon	ENSMUSG00000074860	ProperStrand	46	3	-inf
chr12	25047066	25047129	LTR	IAPEY3-int	ERVK	chr12IAPEY3-int25042287	ProperStrand	9	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-11.7276
chr17	39846931	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	119682677	119682728	SINE	PB1D7	Alu	chr5PB1D7119682645	NonProperStrand	1	1	-inf
chr15	6041758	6041798	LTR	RLTR10C	ERVK	chr15RLTR10C6041483	ProperStrand	1	chr15	6041391	6041441	Simple_repeat	(GGAA)n	Simple_repeat	chr15(GGAA)n6041365	NonProperStrand	1	1	-inf
chr11	75066215	75066315	protein_coding	Rtn4rl1	intron	ENSMUSG00000045287	ProperStrand	44	chr11	115523347	115523437	protein_coding	Grb2	intron	ENSMUSG00000059923	NonProperStrand	19	2	-20.1130
chr7	126870739	126870755	LTR	RLTR11B	ERVK	chr7RLTR11B126870506	NonProperStrand	1	chr17	27925788	27925848	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	NonProperStrand	106	1	-inf
chr13	51104000	51104101	LTR	MT2A	ERVL	chr13MT2A51103995	NonProperStrand	1	chr17	39847551	39847604	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	99113096	99113186	LTR	ORR1A3-int	MaLR	chr10ORR1A3-int99112834	ProperStrand	1	chr10	99113202	99113302	LTR	RLTR15	ERVK	chr10RLTR1599113231	ProperStrand	1	1	-inf
chr4	28908424	28908514	LINE	Lx8	L1	chr4Lx828908396	NonProperStrand	2	chr17	39848253	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr17	39848162	39848190	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	127065381	127065465	protein_coding	Cog2	intron	ENSMUSG00000031979	ProperStrand	10	1	-4.7139
chr9	21087766	21087813	protein_coding	Kri1	intron	ENSMUSG00000035047	ProperStrand	44	chr12	70835573	70835676	protein_coding	Atp5s	intron	ENSMUSG00000054894	ProperStrand	13	1	-15.7779
chr17	39848480	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	41399567	41399599	protein_coding	Efha2	intron	ENSMUSG00000039478	NonProperStrand	7	1	-5.7189
chrX	93500552	93500637	LINE	Lx5	L1	chrXLx593500046	NonProperStrand	1	chr14	87138895	87138971	protein_coding	Diap3	intron	ENSMUSG00000022021	ProperStrand	76	1	-inf
chr17	34950947	34951014	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr16	8844647	8844723	protein_coding	1810013L24Rik	intron	ENSMUSG00000022507	ProperStrand	32	1	-11.9003
chr12	51682142	51682195	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	chr9	57434785	57434817	protein_coding	Scamp2	intron	ENSMUSG00000040188	NonProperStrand	41	1	-12.0440
chr19	5801062	5801185	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr14	103573166	103573186	protein_coding	Mycbp2	intron	ENSMUSG00000033004	ProperStrand	9	1	-8.2425
chr12	112965957	112969302	antisense	Gm15996	.	ENSMUSG00000090026	ProperStrand	2	chr12	112973486	112973507	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	NonProperStrand	45	1	-19.8306
chr17	22381052	22381144	LINE	L1_Mus1	L1	chr17L1_Mus122377926	ProperStrand	4	chr9	123462133	123462183	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr11	18988865	18988965	LINE	L1Md_T	L1	chr11L1Md_T18988047	NonProperStrand	2	chr11	18989080	18989170	LTR	RLTR13A3	ERVK	chr11RLTR13A318989059	ProperStrand	1	1	-inf
chr17	39847640	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	44335878	44335925	SINE	RSINE1	B4	chr9RSINE144335809	NonProperStrand	1	1	-inf
chr3	103292000	103292090	LTR	ORR1E	MaLR	chr3ORR1E103291723	ProperStrand	1	chr3	103292142	103292242	SINE	B1F	Alu	chr3B1F103292094	NonProperStrand	1	1	-inf
chr17	39846003	39846099	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr4	153766252	153766271	protein_coding	Prdm16	intron	ENSMUSG00000039410	NonProperStrand	22	1	-3.7612
chr8	91579840	91579871	LTR	MTEb	MaLR	chr8MTEb91579832	NonProperStrand	2	chr3	144511456	144511566	protein_coding	Clca4	intron	ENSMUSG00000037033	ProperStrand	58	1	-19.1639
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	131367805	131368438	LTR	MTE2a	MaLR	chr6MTE2a131367684	ProperStrand	2	1	-5.4040
chr1	132714544	132714628	antisense	Gm15848	.	ENSMUSG00000086706	ProperStrand	15	chr7	141106938	141106978	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-12.6275
chr8	115081897	115081968	LTR	MTEa-int	MaLR	chr8MTEa-int115080810	NonProperStrand	9	chr15	80078500	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-11.9691
chr13	9834324	9834417	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chrX	7593900	7593936	protein_coding	Glod5	intron	ENSMUSG00000031163	ProperStrand	19	1	-11.4378
chr13	40898352	40898402	Simple_repeat	(TC)n	Simple_repeat	chr13(TC)n40898338	ProperStrand	1	chrX	20517743	20517806	protein_coding-noncoding	Elk1	utr3	ENSMUSG00000009406	NonProperStrand	6	1	-inf
chrX	86384282	86384382	LINE	L1Md_T	L1	chrXL1Md_T86383742	ProperStrand	1	chrX	86384682	86384772	LTR	MMERVK10C-int	ERVK	chrXMMERVK10C-int86384606	NonProperStrand	1	1	-inf
chr9	57414662	57414679	protein_coding	Scamp2	intron	ENSMUSG00000040188	NonProperStrand	41	chr10	123028827	123028854	protein_coding	Fam19a2	intron	ENSMUSG00000044071	NonProperStrand	176	1	-10.6311
chr5	67393777	67393844	protein_coding	Limch1	exon	ENSMUSG00000037736	NonProperStrand	69	chr19	29716095	29716152	protein_coding	Ermp1	intron	ENSMUSG00000046324	ProperStrand	2	1	-18.7948
chr7	141451055	141451284	LINE	Lx2	L1	chr7Lx2141451081	ProperStrand	221	chr7	141447977	141448761	SINE	PB1D10	Alu	chr7PB1D10141447926	NonProperStrand	38	1	-10.3293
chr14	19278154	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr2	152318411	152318750	LTR	ORR1B1-int	MaLR	chr2ORR1B1-int152317556	ProperStrand	3	1	-17.9188
chr11	115593646	115593721	SINE	B2_Mm1a	B2	chr11B2_Mm1a115593581	ProperStrand	1	chr18	56733809	56733876	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	96	1	-inf
chr17	39847767	39847924	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	53428986	53430657	protein_coding	Il4	intron	ENSMUSG00000000869	ProperStrand	8	3	-6.7794
chr7	120696501	120704794	protein_coding-noncoding	Far1	utr5	ENSMUSG00000030759	ProperStrand	6	chr7	120696629	120700677	protein_coding	Far1	intron	ENSMUSG00000030759	ProperStrand	49	3	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	71949516	71950633	SINE	B4A	B4	chr6B4A71950516	ProperStrand	4	1	-3.7035
chr17	39847658	39847722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	173237772	173237826	LTR	ORR1D2	MaLR	chr2ORR1D2173237487	NonProperStrand	2	1	-5.4040
chr4	45687631	45687731	LTR	LTR33A	ERVL	chr4LTR33A45687467	NonProperStrand	1	chr4	45687880	45687970	SINE	B1_Mm	Alu	chr4B1_Mm45687825	NonProperStrand	1	1	-inf
chr17	83526255	83526285	SINE	B4A	B4	chr17B4A83526243	ProperStrand	1	chr1	72226313	72226361	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-inf
chr5	140221880	140221956	SINE	B3A	B2	chr5B3A140221837	NonProperStrand	1	chr5	140198146	140198170	protein_coding	Micall2	intron	ENSMUSG00000036718	ProperStrand	59	1	-inf
chr9	14547722	14547812	LTR	RMER5	ERV1	chr9RMER514547739	ProperStrand	2	chr9	14547617	14547717	Low_complexity	GA-rich	Low_complexity	chr9GA-rich14547622	NonProperStrand	2	2	-inf
chr17	39846411	39846431	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	19176937	19177071	SINE	B1_Mus2	Alu	chr12B1_Mus219176891	ProperStrand	1	1	-inf
chr5	27778686	27778756	protein_coding-noncoding	Dpp6	utr5	ENSMUSG00000061576	NonProperStrand	7	chr5	27780239	27780299	protein_coding	Dpp6	intron	ENSMUSG00000061576	NonProperStrand	86	1	-15.7276
chr16	35107726	35107745	protein_coding	Ptplb	utr3	ENSMUSG00000035376	ProperStrand	179	chr8	124856711	124856791	protein_coding	Zfpm1	intron	ENSMUSG00000049577	NonProperStrand	51	1	-10.1571
chr16	8847980	8848046	protein_coding	1810013L24Rik	intron	ENSMUSG00000022507	ProperStrand	32	chr9	121766056	121766135	protein_coding	Higd1a	intron	ENSMUSG00000038412	NonProperStrand	13	1	-16.4222
chr8	41125379	41125469	LINE	L1Md_F2	L1	chr8L1Md_F241124422	ProperStrand	2	chr5	31514942	31515042	protein_coding	Ppm1g	intron	ENSMUSG00000029147	ProperStrand	6	1	-inf
chr11	50289812	50289882	LTR	MLT1H	MaLR	chr11MLT1H50289686	NonProperStrand	5	chr5	145292358	145292444	SINE	B4A	B4	chr5B4A145292358	ProperStrand	1	1	-inf
chr4	28399045	28399135	LINE	L1Md_F3	L1	chr4L1Md_F328398976	NonProperStrand	2	chr4	28399169	28399269	LTR	MTD	MaLR	chr4MTD28399157	NonProperStrand	2	2	-inf
chr13	80890690	80890775	SINE	B4A	B4	chr13B4A80890672	ProperStrand	4	chr9	123462070	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr1	162679989	162680047	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	chr10	80550726	80550830	protein_coding	Creb3l3	intron	ENSMUSG00000035041	ProperStrand	27	1	-11.5592
chr19	23155560	23155618	LINE	L1Md_F2	L1	chr19L1Md_F223155325	ProperStrand	2	chr17	39847243	39847341	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr12	76899720	76899842	SINE	B1F2	Alu	chr12B1F276899748	ProperStrand	1	chr12	76898565	76898583	SINE	PB1D9	Alu	chr12PB1D976898543	ProperStrand	1	1	-inf
chr4	119282445	119282826	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	chr2	59622516	59622610	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	1	-8.8874
chr11	109011744	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	152262241	152262274	protein_coding	Gm15155	intron	ENSMUSG00000055109	ProperStrand	121	1	-4.7346
chr6	94176609	94176674	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr16	31056564	31056654	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	1	-3.1583
chr17	39847800	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	125652281	125652373	LTR	ORR1B2	MaLR	chr4ORR1B2125652047	NonProperStrand	1	1	-inf
chr17	39847539	39847585	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	98728064	98728112	protein_coding	Dhh	intron	ENSMUSG00000023000	ProperStrand	4	1	-3.7035
chr5	26935367	26935416	LTR	MER52-int	ERV1	chr5MER52-int26935062	NonProperStrand	2	chr5	27006207	27006266	LTR	RLTR10C	ERVK	chr5RLTR10C27005881	NonProperStrand	2	2	-inf
chr15	81365398	81365466	SINE	B1_Mm	Alu	chr15B1_Mm81365417	ProperStrand	2	chr15	81365273	81365322	SINE	PB1D10	Alu	chr15PB1D1081365276	ProperStrand	1	1	-inf
chrX	7572774	7572874	LINE	L1_Rod	L1	chrXL1_Rod7572426	ProperStrand	8	chrX	7572963	7573053	SINE	B1_Mm	Alu	chrXB1_Mm7572899	ProperStrand	2	2	-inf
chr10	80810323	80810339	protein_coding-noncoding	Hmg20b	utr3	ENSMUSG00000020232	NonProperStrand	1	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	1	-inf
chr6	108797826	108797956	protein_coding	Edem1	intron	ENSMUSG00000030104	ProperStrand	32	chr12	16680327	16680343	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	27	1	-14.9042
chr17	39846594	39846707	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	167766297	167766316	protein_coding	Ptpn1	intron	ENSMUSG00000027540	NonProperStrand	2	1	-5.3533
chr6	28863944	28864029	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr2	18072495	18072570	protein_coding	Mllt10	intron	ENSMUSG00000026743	ProperStrand	47	1	-7.0182
chr18	44443028	44443096	LTR	MTEb	MaLR	chr18MTEb44442835	NonProperStrand	1	chr18	44443172	44443230	LTR	MTEb	MaLR	chr18MTEb44443175	NonProperStrand	2	1	-inf
chr19	3905876	3905921	protein_coding	Tcirg1	intron	ENSMUSG00000001750	ProperStrand	1	chr13	89725251	89725310	protein_coding	Hapln1	intron	ENSMUSG00000021613	NonProperStrand	42	1	-inf
chrX	60142153	60142263	LINE	L1Md_A	L1	chrXL1Md_A60137972	ProperStrand	2	chr9	123462158	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr19	10027262	10027281	LTR	MTD	MaLR	chr19MTD10026943	ProperStrand	1	chr10	62874092	62874222	SINE	B3	B2	chr10B362874127	ProperStrand	1	1	-inf
chrX	131106116	131106138	protein_coding	Btk	intron	ENSMUSG00000031264	ProperStrand	7	chr16	24394063	24394162	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	1	-13.5497
chr9	44156660	44158533	protein_coding	Vps11	intron	ENSMUSG00000032127	ProperStrand	7	chr1	36699632	36699711	protein_coding	Fam178b	intron	ENSMUSG00000046337	ProperStrand	47	1	-16.9857
chr19	33117126	33117194	LINE	L1MA5A	L1	chr19L1MA5A33115732	NonProperStrand	10	chr17	39843362	39843427	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-5.9887
chr6	28879112	28879136	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr1	39997088	39997122	protein_coding	Map4k4	intron	ENSMUSG00000026074	ProperStrand	105	1	-5.4341
chr15	27025593	27025690	LINE	L2	L2	chr15L227025524	ProperStrand	1	chr17	24721152	24721211	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-inf
chr5	54016011	54016029	protein_coding	Rbpj	intron	ENSMUSG00000039191	ProperStrand	22	chr2	154461858	154461980	protein_coding	Zfp341	intron	ENSMUSG00000059842	ProperStrand	110	1	-12.8384
chr15	95886642	95886674	lincRNA	D030018L15Rik	intron	ENSMUSG00000078925	NonProperStrand	36	chr16	35806895	35807011	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	1	-10.7408
chr13	21722304	21722348	LTR	IAPEz-int	ERVK	chr13IAPEz-int21722038	NonProperStrand	5	chr9	123462128	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39846759	39846795	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	179479234	179479280	LTR	MTC-int	MaLR	chr1MTC-int179478585	NonProperStrand	1	1	-inf
chr3	122358608	122358698	LTR	IAPEz-int	ERVK	chr3IAPEz-int122358538	ProperStrand	1	chr3	122359085	122359185	LTR	IAPEz-int	ERVK	chr3IAPEz-int122358874	ProperStrand	1	1	-inf
chr11	86514458	86514558	protein_coding-noncoding	Cltc	utr3	ENSMUSG00000047126	ProperStrand	6	chr11	86514574	86514664	protein_coding	Cltc	intron	ENSMUSG00000047126	ProperStrand	35	3	-inf
chr1	18514645	18514735	LINE	L3	CR1	chr1L318514661	NonProperStrand	1	chr2	59953982	59954082	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	1	-inf
chr17	39848053	39848071	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	167101852	167101952	SINE	B3	B2	chr2B3167101828	ProperStrand	1	1	-inf
chr12	70022973	70023063	LTR	RLTR6-int	ERV1	chr12RLTR6-int70015408	NonProperStrand	2	chr12	70023352	70023452	LTR	RLTR6_Mm	ERV1	chr12RLTR6_Mm70023038	NonProperStrand	1	1	-inf
chr4	137951522	137956478	protein_coding	AB041806	intron	ENSMUSG00000046109	ProperStrand	4	chr4	137949522	137950222	protein_coding	Fam43b	utr3	ENSMUSG00000078235	NonProperStrand	3	3	-inf
chr8	110696398	110696496	SINE	B4	B4	chr8B4110696183	ProperStrand	4	chr17	75888826	75888861	protein_coding	Rasgrp3	intron	ENSMUSG00000071042	NonProperStrand	3	1	-inf
chr9	123461931	123462056	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	84691131	84691161	protein_coding	Slc43a1	intron	ENSMUSG00000027075	NonProperStrand	12	1	-4.0248
chr10	79549542	79549575	protein_coding	Sbno2	intron	ENSMUSG00000035673	ProperStrand	55	chr13	23446774	23446827	protein_coding	Zfp322a	utr3	ENSMUSG00000046351	ProperStrand	4	1	-17.8864
chrX	73781177	73781741	LINE	Lx2	L1	chrXLx273779912	NonProperStrand	8	chrX	73781703	73782009	LINE	Lx2	L1	chrXLx273781512	NonProperStrand	4	1	-inf
chr2	26913167	26913267	LINE	Lx4B	L1	chr2Lx4B26913188	ProperStrand	21	chr11	72572626	72572718	protein_coding	Ankfy1	intron	ENSMUSG00000020790	NonProperStrand	4	1	-20.2022
chr15	80082858	80082920	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr9	106891887	106891939	protein_coding	Dock3	intron	ENSMUSG00000039716	ProperStrand	67	1	-7.8675
chr7	13024636	13024703	LINE	L1_Mus1	L1	chr7L1_Mus113018915	NonProperStrand	76	chr12	78350930	78351015	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-5.4332
chr1	55000307	55000663	LTR	MTD	MaLR	chr1MTD55000089	NonProperStrand	11	chr1	55000752	55000842	SINE	B2_Mm1a	B2	chr1B2_Mm1a55000775	NonProperStrand	5	3	-inf
chr16	22103902	22103953	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	chr13	97190562	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1655
chr14	76666723	76666813	LTR	RLTR11A2	ERVK	chr14RLTR11A276666647	NonProperStrand	1	chr14	76666152	76666252	SINE	B3A	B2	chr14B3A76666145	ProperStrand	1	1	-inf
chr17	39847251	39847279	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	25862060	25862078	protein_coding	Celf4	intron	ENSMUSG00000024268	NonProperStrand	3	1	-5.4882
chr8	22784731	22784831	LTR	IAPEz-int	ERVK	chr8IAPEz-int22781808	ProperStrand	1	chr8	22785281	22785371	LTR	IAPEz-int	ERVK	chr8IAPEz-int22785083	ProperStrand	1	1	-inf
chr16	18533252	18533332	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	chr6	4971736	4971780	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-10.3676
chr1	118930536	118930643	LINE	L1MC4	L1	chr1L1MC4118930485	NonProperStrand	2	chr9	64177934	64177982	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	2	-inf
chr17	39846210	39846262	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	115610918	115611078	SINE	MIRb	MIR	chr5MIRb115610881	ProperStrand	1	1	-inf
chr4	129742105	129742147	protein_coding	Col16a1	exon	ENSMUSG00000040690	NonProperStrand	18	chr7	13032187	13032212	pseudogene	Vmn2r-ps53	.	ENSMUSG00000092583	ProperStrand	40	1	-15.2959
chr11	101267365	101267390	LTR	RMER4B	ERVK	chr11RMER4B101267307	NonProperStrand	1	chr17	39846430	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	118682305	118682329	LINE	L1_Mur1	L1	chr1L1_Mur1118682021	ProperStrand	19	chr1	118679462	118679589	LTR	RLTR44A	ERVK	chr1RLTR44A118679209	ProperStrand	2	1	-20.8001
chr10	105317669	105317759	LTR	MT2B	ERVL	chr10MT2B105317627	ProperStrand	1	chr10	105317435	105317535	Low_complexity	CT-rich	Low_complexity	chr10CT-rich105317401	NonProperStrand	1	1	-inf
chr11	51779731	51779800	lincRNA	Gm16953	intron	ENSMUSG00000087101	NonProperStrand	36	chr11	51782828	51788199	protein_coding	Cdkn2aipnl	intron	ENSMUSG00000020392	ProperStrand	5	1	-18.3183
chr9	123461802	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr11	88948727	88948757	protein_coding	Gm525	intron	ENSMUSG00000072553	NonProperStrand	10	1	-4.3847
chr2	139996115	140008746	protein_coding	2310003L22Rik	intron	ENSMUSG00000027384	NonProperStrand	20	chr2	139977655	139996114	protein_coding	Esf1	intron	ENSMUSG00000045624	ProperStrand	16	1	-16.9430
chr5	146261044	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	96882878	96882941	protein_coding	Me3	intron	ENSMUSG00000030621	ProperStrand	72	1	-4.7108
chr8	35080828	35080928	LINE	L1MB4	L1	chr8L1MB435080747	NonProperStrand	2	chr8	35080588	35080678	LTR	MLT1A	MaLR	chr8MLT1A35080572	ProperStrand	2	2	-inf
chr10	42534749	42534812	protein_coding	Sec63	intron	ENSMUSG00000019802	ProperStrand	36	chr3	85591811	85591876	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-10.9636
chr17	32578792	32578882	SINE	ID_B1	B4	chr17ID_B132578775	ProperStrand	1	chr17	32578697	32578797	SINE	RSINE1	B4	chr17RSINE132578620	ProperStrand	1	1	-inf
chr4	72679099	72679192	LTR	MYSERV-int	ERVK	chr4MYSERV-int72678112	ProperStrand	1	chr9	100767921	100767976	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	1	-inf
chr6	108354673	108356216	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr4	40208909	40209881	protein_coding	Topors	exon	ENSMUSG00000036822	ProperStrand	3	1	-14.8010
chr7	49584923	49584948	LINE	L1_Mur1	L1	chr7L1_Mur149584331	ProperStrand	1	chr9	123461930	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	167235213	167235252	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	chr13	97190578	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.0632
chr15	77276597	77276632	protein_coding	Apol7b	intron	ENSMUSG00000068252	ProperStrand	50	chr15	77273781	77273826	pseudogene	Gm6506	.	ENSMUSG00000082233	ProperStrand	6	1	-17.2698
chr5	32645072	32651684	protein_coding	Plb1	intron	ENSMUSG00000029134	ProperStrand	46	chr2	151561523	151561589	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	58	3	-inf
chr7	46924424	46924496	LINE	L1_Mus1	L1	chr7L1_Mus146924114	ProperStrand	2	chr11	5492663	5492745	protein_coding	Ankrd36	intron	ENSMUSG00000020481	ProperStrand	4	1	-22.1285
chr18	85866724	85866824	LTR	RMER19C	ERVK	chr18RMER19C85866744	NonProperStrand	2	chr18	85867242	85867332	SINE	B1_Mus1	Alu	chr18B1_Mus185867190	ProperStrand	1	1	-inf
chr7	67564224	67564299	LINE	L1Md_F	L1	chr7L1Md_F67560258	NonProperStrand	1	chr5	146261141	146261206	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr17	39847173	39847213	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	150358601	150358719	SINE	B2_Mm1t	B2	chr2B2_Mm1t150358538	ProperStrand	1	1	-inf
chr18	38442918	38447704	protein_coding	Pcdh12	exon	ENSMUSG00000024440	NonProperStrand	5	chr18	38419028	38419118	protein_coding	0610009O20Rik	intron	ENSMUSG00000024442	ProperStrand	8	1	-20.8574
chr17	90335385	90335475	LTR	IAPEz-int	ERVK	chr17IAPEz-int90335258	NonProperStrand	1	chr17	90335037	90335137	LTR	IAPLTR1_Mm	ERVK	chr17IAPLTR1_Mm90334894	NonProperStrand	1	1	-inf
chr4	106847854	106847953	protein_coding	2210012G02Rik	intron	ENSMUSG00000028619	ProperStrand	16	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-9.2358
chr17	24695933	24695957	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	65	chr8	124249912	124249983	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-6.7737
chr8	67715369	67715458	LTR	ORR1A2	MaLR	chr8ORR1A267715171	ProperStrand	1	chr16	35981719	35981761	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	1	-inf
chr6	124744923	124745013	LTR	MYSERV-int	ERVK	chr6MYSERV-int124744914	ProperStrand	4	chr6	124744827	124744927	SINE	B1_Mus2	Alu	chr6B1_Mus2124744767	ProperStrand	3	3	-inf
chr2	52693053	52693070	SINE	B1_Mur4	Alu	chr2B1_Mur452693044	NonProperStrand	1	chr13	113993292	113993371	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-inf
chr10	40258543	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr3	114154152	114154171	LINE	L1Md_F2	L1	chr3L1Md_F2114153937	ProperStrand	1	1	-inf
chr3	34032705	34032805	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr15	83149672	83149762	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	2	-14.5402
chr17	39847551	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	97169166	97169203	LTR	RMER19B	ERVK	chr3RMER19B97168643	ProperStrand	2	1	-5.4040
chr3	90213215	90213252	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	chr2	156725842	156725941	pseudogene	Gm14278	.	ENSMUSG00000080880	NonProperStrand	97	1	-12.5274
chr17	39847460	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	138332845	138332864	protein_coding	Pla2g2d	intron	ENSMUSG00000041202	ProperStrand	3	1	-4.3512
chr11	109011787	109011857	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	84199887	84199967	LINE	L1Md_F2	L1	chr15L1Md_F284199847	NonProperStrand	7	1	-10.4933
chr5	114851994	114852021	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr12	118004132	118004151	protein_coding	Ptprn2	intron	ENSMUSG00000056553	ProperStrand	87	1	-8.5591
chr5	122160332	122160402	SINE	RSINE1	B4	chr5RSINE1122160270	NonProperStrand	1	chr5	122167579	122167608	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	1	-inf
chr1	8074667	8074767	DNA	URR1A	MER1_type	chr1URR1A8074565	ProperStrand	1	chr1	8074775	8074865	LTR	ORR1B2	MaLR	chr1ORR1B28074759	NonProperStrand	1	1	-inf
chr14	29749375	29749393	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	ProperStrand	70	chr2	5379266	5379364	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.2544
chr13	58533447	58533562	LTR	MERVL-int	ERVL	chr13MERVL-int58530555	ProperStrand	1	chr17	39847559	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	93998083	93998134	protein_coding	Hsd17b12	utr5	ENSMUSG00000027195	ProperStrand	58	chr13	44869896	44869999	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.5574
chr17	4082217	4082261	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr16	35802958	35803054	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	1	-5.3890
chr8	116957197	116957297	LTR	RMER4B	ERVK	chr8RMER4B116957189	NonProperStrand	1	chr8	116958114	116958204	SINE	B4A	B4	chr8B4A116958078	NonProperStrand	2	1	-inf
chr10	18530841	18530931	LTR	MYSERV16_I-int	ERVK	chr10MYSERV16_I-int18530555	ProperStrand	1	chr10	18531051	18531151	LTR	RLTR20B3	ERVK	chr10RLTR20B318531078	ProperStrand	1	1	-inf
chr7	104358592	104358640	protein_coding	Gab2	intron	ENSMUSG00000004508	NonProperStrand	4	chr16	13300648	13300751	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	1	-15.8336
chr5	115560927	115561114	protein_coding	Acads	exon	ENSMUSG00000029545	NonProperStrand	165	chr7	25288090	25288132	protein_coding	Cadm4	intron	ENSMUSG00000054793	ProperStrand	89	1	-9.2018
chr11	109011794	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	27561057	27561092	protein_coding	Grm4	intron	ENSMUSG00000063239	NonProperStrand	125	1	-4.6723
chr13	17883505	17883572	protein_coding	Cdk13	intron	ENSMUSG00000041297	ProperStrand	10	chr1	17051964	17051998	protein_coding	Jph1	intron	ENSMUSG00000042686	ProperStrand	39	1	-16.5682
chr17	39847988	39848037	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	37889685	37889743	protein_coding	Meox2	intron	ENSMUSG00000036144	ProperStrand	3	1	-4.3512
chr6	33285712	33285745	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr11	97726722	97726833	protein_coding	Fbxo47	intron	ENSMUSG00000070336	ProperStrand	56	1	-6.9503
chr14	115109309	115109409	LINE	L1Md_A	L1	chr14L1Md_A115104204	NonProperStrand	1	chr14	115109563	115109653	LINE	L1Md_A	L1	chr14L1Md_A115109405	NonProperStrand	2	1	-inf
chr4	133693940	133693987	protein_coding	Ccdc21	intron	ENSMUSG00000037443	ProperStrand	102	chr2	5379267	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.5507
chr4	8272233	8272333	LINE	L1_Mus1	L1	chr4L1_Mus18272190	ProperStrand	1	chr4	8272121	8272211	LTR	MTD	MaLR	chr4MTD8271911	NonProperStrand	1	1	-inf
chr10	61343758	61343852	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	chr17	27634196	27634224	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-5.4336
chr14	16429545	16429635	LINE	L1Md_F	L1	chr14L1Md_F16425929	ProperStrand	1	chr17	28480053	28480153	protein_coding	Tead3	intron	ENSMUSG00000002249	NonProperStrand	1	1	-inf
chr2	109257699	109257748	LINE	L1ME1	L1	chr2L1ME1109257320	NonProperStrand	1	chr17	39846659	39846717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	31700471	31700541	LINE	L1Md_F2	L1	chr12L1Md_F231700286	ProperStrand	1	chr17	39848247	39848327	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr4	108179451	108179503	protein_coding	Zcchc11	intron	ENSMUSG00000034610	NonProperStrand	31	chr17	86772625	86772687	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	1	-11.5176
chrX	36859676	36859776	LTR	IAPEY3-int	ERVK	chrXIAPEY3-int36858971	NonProperStrand	1	chrX	36860273	36860363	LTR	IAPEY3-int	ERVK	chrXIAPEY3-int36860259	NonProperStrand	1	1	-inf
chr14	86978432	86978532	SINE	B4	B4	chr14B486978315	NonProperStrand	5	chr14	86978576	86978666	Simple_repeat	(GGGA)n	Simple_repeat	chr14(GGGA)n86978598	NonProperStrand	5	5	-inf
chr14	26936769	26936829	LTR	MTEb	MaLR	chr14MTEb26936779	NonProperStrand	1	chr8	13938914	13938995	protein_coding	Fbxo25	intron	ENSMUSG00000038365	ProperStrand	46	1	-inf
chr7	109790748	109790838	LTR	MTD	MaLR	chr7MTD109790577	NonProperStrand	1	chr7	79895455	79895555	LTR	RLTR16	ERVK	chr7RLTR1679895406	NonProperStrand	1	1	-inf
chr3	119730520	119730620	LINE	L1_Mur2	L1	chr3L1_Mur2119730366	NonProperStrand	1	chr3	120351548	120351638	SINE	B4	B4	chr3B4120351574	ProperStrand	1	1	-inf
chr11	85714805	85714890	protein_coding	Tbx4	intron	ENSMUSG00000000094	ProperStrand	90	chr10	64361376	64361395	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-10.1027
chr19	4967675	4967770	LINE	Lx9	L1	chr19Lx94967357	NonProperStrand	1	chr17	39847682	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	97159957	97159975	SINE	B1_Mur2	Alu	chr11B1_Mur297159845	ProperStrand	1	chr11	97159973	97160065	SINE	B2_Mm1a	B2	chr11B2_Mm1a97159991	ProperStrand	1	1	-inf
chr17	16959422	16959461	LINE	Lx6	L1	chr17Lx616959141	ProperStrand	1	chr17	39847118	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr16	19208906	19209002	LTR	RLTR27	ERVK	chr16RLTR2719208736	ProperStrand	1	chr17	39846789	39846832	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr16	28588789	28588879	LINE	L1MEf	L1	chr16L1MEf28588797	NonProperStrand	1	chr16	28588454	28588554	LINE	Lx7	L1	chr16Lx728588308	NonProperStrand	1	1	-inf
chr8	124938624	124938707	protein_coding	Zc3h18	intron	ENSMUSG00000017478	ProperStrand	4	chr6	87004623	87004696	protein_coding	Gfpt1	exon	ENSMUSG00000029992	ProperStrand	40	1	-18.8881
chr12	28438347	28438447	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr16	13908270	13908360	protein_coding	Mpv17l	intron	ENSMUSG00000022679	ProperStrand	42	1	-15.8852
chr8	91542737	91542760	LTR	MLT1C	MaLR	chr8MLT1C91542429	ProperStrand	2	chr8	91554642	91554735	protein_coding	Sall1	exon	ENSMUSG00000031665	NonProperStrand	129	1	-17.9043
chr11	50319557	50319634	DNA	Tigger7	MER2_type	chr11Tigger750319332	NonProperStrand	1	chr17	39846673	39846741	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	53641617	53641715	LTR	RMER4A	ERVK	chr19RMER4A53641625	ProperStrand	7	chr6	3201482	3201508	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-7.1107
chr11	3263138	3263161	protein_coding	Limk2	intron	ENSMUSG00000020451	ProperStrand	23	chr11	33571130	33571249	protein_coding	Kcnip1	intron	ENSMUSG00000053519	NonProperStrand	100	1	-12.9385
chr1	64731410	64731497	antisense	2810408I11Rik	.	ENSMUSG00000087213	ProperStrand	99	chr7	94993894	94993912	protein_coding	Grm5	intron	ENSMUSG00000049583	NonProperStrand	8	1	-15.1584
chr11	86117817	86117907	antisense	4632419I22Rik	.	ENSMUSG00000085208	ProperStrand	3	chr11	86117942	86118042	protein_coding	Med13	intron	ENSMUSG00000034297	NonProperStrand	4	1	-inf
chr1	110132697	110132714	LTR	MurERV4_19-int	ERVK	chr1MurERV4_19-int110131558	NonProperStrand	5	chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	1	-17.4395
chr14	51263309	51263399	LINE	L1MA7	L1	chr14L1MA751263021	NonProperStrand	1	chr14	51179267	51179367	LINE	L1Md_T	L1	chr14L1Md_T51177458	NonProperStrand	2	1	-inf
chr2	36094032	36094048	protein_coding	Ptgs1	intron	ENSMUSG00000047250	ProperStrand	13	chr11	117077242	117077352	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-13.2895
chr2	86637357	86637457	LINE	L1Md_F2	L1	chr2L1Md_F286637338	ProperStrand	1	chr2	86637270	86637360	LINE	Lx2A	L1	chr2Lx2A86634014	NonProperStrand	1	1	-inf
chr10	51619970	51620060	LINE	L1_Mus3	L1	chr10L1_Mus351619640	ProperStrand	1	chr10	51620216	51620316	LTR	RLTRETN_Mm	ERVK	chr10RLTRETN_Mm51620215	ProperStrand	1	1	-inf
chr16	8708891	8710074	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr1	182865634	182865675	protein_coding	Lefty1	intron	ENSMUSG00000038793	ProperStrand	18	1	-11.1043
chr17	39846591	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	59768242	59787947	protein_coding-noncoding	Cdh23	utr3	ENSMUSG00000012819	ProperStrand	1	1	-inf
chr10	91118496	91118537	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	9	chr5	117128441	117128459	LTR	RLTR11A	ERVK	chr5RLTR11A117128216	NonProperStrand	1	1	-inf
chr17	39847181	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	40292943	40293042	LTR	RLTR13C2	ERVK	chr19RLTR13C240292390	ProperStrand	7	1	-3.6430
chr7	34189439	34192818	LTR	IAPEz-int	ERVK	chr7IAPEz-int34190054	NonProperStrand	1	chr13	112578193	112578238	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr17	39847743	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	3292902	3292985	LTR	RLTR10D	ERVK	chr2RLTR10D3292616	NonProperStrand	1	1	-inf
chr7	89923569	89923680	protein_coding	Eftud1	intron	ENSMUSG00000038563	NonProperStrand	15	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.7589
chr6	48439217	48439234	protein_coding	Sspo	intron	ENSMUSG00000029797	NonProperStrand	4	chr1	5083162	5083259	protein_coding	Atp6v1h	intron	ENSMUSG00000033793	ProperStrand	26	1	-20.6287
chr11	6620313	6620393	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	14	chr9	123461931	123461958	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr2	131918863	131918885	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	chr1	131848359	131848454	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-8.4148
chr17	12740051	12740145	LINE	L1_Mur3	L1	chr17L1_Mur312739775	NonProperStrand	1	chr17	39847668	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	12827334	12827420	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.6964
chr7	143161762	143161823	LTR	MT2A	ERVL	chr7MT2A143161516	NonProperStrand	1	chr13	28953391	28953442	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	NonProperStrand	10	1	-inf
chr17	4082158	4082207	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr9	56223570	56223609	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-4.2249
chr15	14980323	14980370	LTR	ETnERV-int	ERVK	chr15ETnERV-int14978677	NonProperStrand	1	chr9	65195114	65195204	protein_coding	Pdcd7	intron	ENSMUSG00000041837	ProperStrand	3	1	-inf
chr17	39847636	39847712	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	11408738	11408824	SINE	B2_Mm2	B2	chr4B2_Mm211408668	NonProperStrand	1	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	100033871	100033919	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	119	1	-5.4618
chr7	116358320	116358420	DNA	RCHARR1	MER1_type	chr7RCHARR1116357921	NonProperStrand	3	chr13	94497853	94497943	protein_coding	Dmgdh	intron	ENSMUSG00000042102	ProperStrand	69	3	-inf
chr9	17987812	17987839	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr17	42815921	42816021	protein_coding	Gpr115	intron	ENSMUSG00000023918	ProperStrand	25	1	-12.9149
chr5	143994064	143994168	antisense	4930448H16Rik	.	ENSMUSG00000089879	NonProperStrand	13	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-13.5738
chr13	48970804	48970894	SINE	ID_B1	B4	chr13ID_B148970796	ProperStrand	1	chr13	48970651	48970751	antisense	Gm8619	.	ENSMUSG00000086889	NonProperStrand	17	1	-inf
chr9	65794663	65794800	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	NonProperStrand	105	chr9	65731132	65794658	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	4	-inf
chr17	39843382	39843482	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	73311511	73311601	protein_coding	Slain2	intron	ENSMUSG00000036087	ProperStrand	24	1	-4.2456
chr12	19596568	19596668	LTR	MMERVK10C-int	ERVK	chr12MMERVK10C-int19594869	ProperStrand	3	chr12	24262960	24263050	pseudogene	Gm20474	.	ENSMUSG00000091973	ProperStrand	3	3	-inf
chr12	103037308	103037326	protein_coding	Fbln5	intron	ENSMUSG00000021186	ProperStrand	8	chr9	123462080	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr5	134154724	134154814	SINE	B4	B4	chr5B4134154731	ProperStrand	1	chr5	142883171	142883271	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-inf
chr15	87679856	87679946	LINE	Lx8	L1	chr15Lx887679363	NonProperStrand	2	chr15	87679961	87680061	Simple_repeat	(TCTA)n	Simple_repeat	chr15(TCTA)n87679940	ProperStrand	2	2	-inf
chr9	21391677	21391934	protein_coding-noncoding	Carm1	utr5	ENSMUSG00000032185	ProperStrand	4	chr9	21391478	21391603	protein_coding	Carm1	intron	ENSMUSG00000032185	ProperStrand	86	4	-inf
chr2	30013692	30013782	LTR	MYSERV-int	ERVK	chr2MYSERV-int30013608	NonProperStrand	6	chr2	30013800	30015650	pseudogene	Slc39a1-ps	.	ENSMUSG00000085401	ProperStrand	9	4	-inf
chr14	56695726	56697134	LTR	RMER13B	ERVK	chr14RMER13B56696593	NonProperStrand	1	chr17	39847440	39847479	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	73727652	73727705	protein_coding	Atf2	intron	ENSMUSG00000027104	ProperStrand	38	chr7	34996713	34996806	protein_coding	Gpi1	intron	ENSMUSG00000036427	NonProperStrand	43	1	-13.6207
chr7	88655158	88655248	LINE	L1MEc	L1	chr7L1MEc88655084	ProperStrand	1	chr7	88655002	88655102	SINE	PB1D10	Alu	chr7PB1D1088654992	NonProperStrand	1	1	-inf
chr6	49236495	49236557	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr7	126863608	126863697	protein_coding	Thumpd1	intron	ENSMUSG00000030942	NonProperStrand	18	1	-11.7711
chr17	84403000	84403058	LTR	MLT1J-int	MaLR	chr17MLT1J-int84402847	NonProperStrand	4	chr6	3201470	3201526	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-8.3508
chr11	75576888	75576910	protein_coding	Ywhae	intron	ENSMUSG00000020849	ProperStrand	38	chr16	55914873	55914930	protein_coding	Cep97	intron	ENSMUSG00000022604	ProperStrand	8	1	-17.1090
chr14	12021574	12021663	LINE	L1MC	L1	chr14L1MC12021475	ProperStrand	1	chr2	5379132	5379187	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr19	8831948	8832039	protein_coding	Nxf1	intron	ENSMUSG00000010097	ProperStrand	13	chr12	4989030	4989082	protein_coding	Atad2b	intron	ENSMUSG00000052812	ProperStrand	35	1	-16.2526
chr17	56893760	56893822	protein_coding	Nrtn	intron	ENSMUSG00000039481	ProperStrand	13	chr8	123744305	123744357	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-10.0311
chr18	54699183	54699293	Simple_repeat	(TGGA)n	Simple_repeat	chr18(TGGA)n54699160	NonProperStrand	11	chr9	123461905	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr8	84699695	84699711	LINE	Lx2	L1	chr8Lx284698625	NonProperStrand	21	chr9	32042413	32042447	protein_coding	Arhgap32	intron	ENSMUSG00000041444	ProperStrand	30	1	-15.5503
chr11	99016080	99016110	protein_coding	Ccr7	intron	ENSMUSG00000037944	ProperStrand	29	chr2	5379266	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.9680
chr7	34205910	34207683	LINE	L1Md_F2	L1	chr7L1Md_F234202552	ProperStrand	46	chr18	36762024	36762167	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	1	-12.5257
chr1	87367027	87367078	LTR	RLTR6-int	ERV1	chr1RLTR6-int87365290	NonProperStrand	9	chr12	84418303	84418351	protein_coding	Dpf3	intron	ENSMUSG00000021221	NonProperStrand	34	1	-17.0674
chr14	54417448	54417538	LTR	RMER19B	ERVK	chr14RMER19B54416962	ProperStrand	4	chr14	54417303	54417403	protein_coding	B230359F08Rik	intron	ENSMUSG00000087666	NonProperStrand	4	3	-inf
chr14	56424079	56424108	LINE	L1Md_F3	L1	chr14L1Md_F356423563	NonProperStrand	2	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-16.5743
chr17	39847804	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	62941756	62941840	SINE	B3A	B2	chr9B3A62941638	NonProperStrand	1	1	-inf
chr1	181987640	181987740	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	chr2	152683864	152683954	protein_coding	Tpx2	intron	ENSMUSG00000027469	ProperStrand	42	2	-13.9094
chr17	40811881	40811971	LINE	L1Md_F2	L1	chr17L1Md_F240811626	ProperStrand	1	chr17	40812114	40812214	LINE	L1Md_F2	L1	chr17L1Md_F240811957	ProperStrand	1	1	-inf
chr17	39846583	39846653	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	58426103	58426171	lincRNA	C230004F18Rik	intron	ENSMUSG00000071753	NonProperStrand	2	1	-5.3533
chr17	39846492	39847317	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	46399997	46400014	protein_coding	Psd	intron	ENSMUSG00000037126	ProperStrand	3	1	-4.3017
chr17	42795722	42795739	protein_coding	Gpr115	intron	ENSMUSG00000023918	NonProperStrand	2	chr17	33810727	33810819	protein_coding	Hnrnpm	intron	ENSMUSG00000059208	NonProperStrand	92	1	-18.4814
chr8	70535042	70535099	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	chr13	64368215	64369075	protein_coding	Cdc14b	intron	ENSMUSG00000033102	ProperStrand	27	1	-9.7920
chr17	39846411	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	80580922	80581003	protein_coding	Map2k2	intron	ENSMUSG00000035027	ProperStrand	3	1	-4.3017
chr1	96369298	96369398	LTR	ORR1C1	MaLR	chr1ORR1C196369291	NonProperStrand	2	chr7	142255740	142255830	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-17.5877
chr4	139452737	139453203	Simple_repeat	(TATATG)n	Simple_repeat	chr4(TATATG)n139453035	ProperStrand	1	chr9	123462015	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	30068052	30068110	LTR	RMER2	ERV1	chr2RMER230067561	NonProperStrand	2	chr2	30065557	30065629	SINE	B1_Mus1	Alu	chr2B1_Mus130065535	ProperStrand	1	1	-inf
chr2	94664209	94664299	LTR	ORR1A2-int	MaLR	chr2ORR1A2-int94664148	NonProperStrand	1	chr2	94663948	94664048	LTR	ORR1A2	MaLR	chr2ORR1A294663825	NonProperStrand	1	1	-inf
chr9	115092933	115092989	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	chr19	42419474	42419524	protein_coding	Crtac1	intron	ENSMUSG00000042401	ProperStrand	106	1	-8.5605
chr17	39847611	39847686	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	74382594	74382679	LTR	MT2C_Mm	ERVL	chr4MT2C_Mm74382407	ProperStrand	1	1	-inf
chr9	122240879	122240944	LTR	MERVL-int	ERVL	chr9MERVL-int122238317	ProperStrand	1	chr9	122237927	122238012	LTR	MT2_Mm	ERVL	chr9MT2_Mm122237711	ProperStrand	1	1	-inf
chr15	102096780	102096838	SINE	B2_Mm2	B2	chr15B2_Mm2102096739	ProperStrand	2	chr15	102084678	102084737	protein_coding	Rarg	intron	ENSMUSG00000001288	NonProperStrand	44	1	-19.8653
chr5	135544264	135544372	SINE	B4A	B4	chr5B4A135544277	NonProperStrand	1	chr13	44869627	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr15	89138665	89138749	protein_coding	Sbf1	intron	ENSMUSG00000036529	ProperStrand	15	chr13	44869942	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.2385
chr19	36988108	36988902	SINE	B1_Mus1	Alu	chr19B1_Mus136988117	NonProperStrand	1	chr19	36988897	36988997	SINE	B2_Mm2	B2	chr19B2_Mm236988827	ProperStrand	1	1	-inf
chr6	51577220	51577243	LTR	RMER19B	ERVK	chr6RMER19B51576560	NonProperStrand	1	chr1	63156203	63156245	protein_coding	Ino80d	intron	ENSMUSG00000040865	ProperStrand	58	1	-inf
chr9	78479457	78479634	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr9	21399774	21399790	protein_coding	1810026J23Rik	utr3	ENSMUSG00000048429	ProperStrand	26	1	-9.1894
chr3	130372101	130372191	LINE	L1Md_F3	L1	chr3L1Md_F3130367033	ProperStrand	1	chr3	130372294	130372394	LINE	L1Md_F3	L1	chr3L1Md_F3130372215	ProperStrand	1	1	-inf
chr3	3455079	3455169	SINE	B1_Mur2	Alu	chr3B1_Mur23455054	ProperStrand	1	chr3	3455221	3455321	Simple_repeat	(GAA)n	Simple_repeat	chr3(GAA)n3455197	ProperStrand	1	1	-inf
chr7	130959761	130959871	LINE	Lx3_Mus	L1	chr7Lx3_Mus130959633	NonProperStrand	2	chr7	130959441	130959477	LTR	MLT1A0	MaLR	chr7MLT1A0130959246	NonProperStrand	2	2	-inf
chr13	81672289	81672371	protein_coding-noncoding	Gpr98	utr3	ENSMUSG00000069170	NonProperStrand	1	chr13	81669294	81669365	protein_coding	Gpr98	intron	ENSMUSG00000069170	NonProperStrand	35	1	-inf
chr14	32191853	32191922	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	39	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.7127
chr6	30104501	30104535	DNA	MER102c	MER1_type	chr6MER102c30104501	NonProperStrand	2	chr17	39847064	39847180	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr8	3155100	3155146	protein_coding	Insr	utr3	ENSMUSG00000005534	ProperStrand	62	chr7	28770539	28770595	protein_coding	Zfp850	utr5	ENSMUSG00000074608	NonProperStrand	1	1	-inf
chr2	145752746	145752805	protein_coding	Crnkl1	intron	ENSMUSG00000001767	NonProperStrand	2	chr12	78350926	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-13.3256
chr10	78013106	78013156	LINE	L1Md_F2	L1	chr10L1Md_F278012797	ProperStrand	1	chr10	78012141	78012211	LINE	MusHAL1	L1	chr10MusHAL178012076	ProperStrand	1	1	-inf
chr16	35715526	35715554	protein_coding	Dirc2	intron	ENSMUSG00000022848	ProperStrand	31	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.8903
chr1	167225307	167225416	SINE	B4A	B4	chr1B4A167225279	ProperStrand	2	chr2	157769670	157769720	protein_coding	Vstm2l	exon	ENSMUSG00000037843	ProperStrand	46	1	-20.5155
chr17	39847611	39847643	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	31543789	31543872	protein_coding	Nrbp1	intron	ENSMUSG00000029148	ProperStrand	3	2	-8.1061
chr11	109011651	109011704	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	25822791	25822854	protein_coding	Adam3	intron	ENSMUSG00000031553	ProperStrand	67	1	-5.8825
chr19	58690421	58690521	SINE	B1_Mus2	Alu	chr19B1_Mus258690442	ProperStrand	1	chr19	58690754	58690844	SINE	B2_Mm1t	B2	chr19B2_Mm1t58690776	NonProperStrand	1	1	-inf
chr1	89683148	89683235	protein_coding-noncoding	Atg16l1	utr5	ENSMUSG00000026289	ProperStrand	32	chr1	89724643	89724683	protein_coding-noncoding	Sag	utr5	ENSMUSG00000056055	ProperStrand	18	1	-15.7354
chr12	78755119	78755195	SINE	B4A	B4	chr12B4A78755008	NonProperStrand	1	chr7	99482846	99482930	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-inf
chr16	48572716	48572816	protein_coding	Morc1	intron	ENSMUSG00000022652	ProperStrand	96	chr19	47405438	47405487	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	ProperStrand	170	1	-8.9907
chr13	53284722	53284748	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	chr5	124397270	124397379	protein_coding	Ccdc62	intron	ENSMUSG00000061882	NonProperStrand	30	1	-11.4548
chr11	17940115	17940215	LINE	L1_Mus4	L1	chr11L1_Mus417939746	NonProperStrand	1	chr11	17940220	17940310	Simple_repeat	(GGAGAA)n	Simple_repeat	chr11(GGAGAA)n17940196	NonProperStrand	1	1	-inf
chr2	30815776	30815818	SINE	B1_Mus1	Alu	chr2B1_Mus130815784	NonProperStrand	1	chr1	72334663	72339006	protein_coding	Tmem169	intron	ENSMUSG00000026188	ProperStrand	20	1	-inf
chr15	81364208	81364232	SINE	B1_Mur4	Alu	chr15B1_Mur481364116	ProperStrand	1	chr1	66845173	66845207	protein_coding	1110028C15Rik	intron	ENSMUSG00000026004	ProperStrand	12	1	-inf
chr4	52969247	52969337	LINE	Lx4A	L1	chr4Lx4A52969084	NonProperStrand	1	chr4	52969496	52969596	LTR	MTEb	MaLR	chr4MTEb52969511	ProperStrand	1	1	-inf
chr17	39847539	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	103010844	103010860	SINE	B3	B2	chr15B3103010659	ProperStrand	1	1	-inf
chr7	75774898	75774968	LINE	L1Md_F2	L1	chr7L1Md_F275769915	NonProperStrand	42	chr5	142903388	142903447	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-8.9935
chr7	49580028	49580069	LINE	L1Md_F3	L1	chr7L1Md_F349574165	NonProperStrand	1	chr2	32278926	32279036	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	1	-inf
chrX	144378487	144378571	LINE	L1VL2	L1	chrXL1VL2144378489	NonProperStrand	2	chr16	11709633	11709693	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-16.5282
chr9	96705083	96705125	LTR	MTC	MaLR	chr9MTC96704789	NonProperStrand	1	chr9	96703931	96703983	SINE	B1_Mus1	Alu	chr9B1_Mus196703922	NonProperStrand	1	1	-inf
chr10	7920552	7924722	SINE	B4A	B4	chr10B4A7920419	NonProperStrand	1	chr10	7924728	7924818	protein_coding	Ust	utr3	ENSMUSG00000047712	ProperStrand	54	1	-inf
chr3	60911921	60912021	LINE	Lx2B	L1	chr3Lx2B60911853	ProperStrand	1	chr3	60911811	60911901	LINE	Lx4A	L1	chr3Lx4A60911548	NonProperStrand	1	1	-inf
chr4	138905637	138905737	protein_coding-noncoding	Mrto4	utr3	ENSMUSG00000028741	ProperStrand	4	chr4	138905761	138905851	protein_coding	Mrto4	intron	ENSMUSG00000028741	ProperStrand	7	4	-inf
chr10	59951724	59951800	protein_coding	Cdh23	intron	ENSMUSG00000012819	ProperStrand	124	chr13	20547308	20547362	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	1	-8.0495
chr4	100309388	100309407	DNA	URR1A	MER1_type	chr4URR1A100309265	NonProperStrand	1	chr17	39846745	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847274	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	41626610	41626708	protein_coding	Trpv5	intron	ENSMUSG00000036899	NonProperStrand	5	1	-4.3348
chr11	86588867	86588949	protein_coding	Dhx40	intron	ENSMUSG00000018425	ProperStrand	14	chr6	70866720	70866778	protein_coding	1700011F03Rik	intron	ENSMUSG00000051896	NonProperStrand	7	1	-19.2920
chr15	29810411	29810501	LINE	Lx6	L1	chr15Lx629810380	ProperStrand	1	chr15	29810706	29810806	LTR	MTD-int	MaLR	chr15MTD-int29810731	ProperStrand	1	1	-inf
chr11	54107210	54107300	SINE	B3	B2	chr11B354107205	ProperStrand	2	chr11	54107102	54107202	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n54106993	NonProperStrand	2	2	-inf
chr2	27426321	27426337	SINE	B4A	B4	chr2B4A27426249	NonProperStrand	2	chr17	26572983	26573074	protein_coding	Neurl1b	intron	ENSMUSG00000034413	ProperStrand	95	1	-18.6969
chr10	113396228	113396328	LINE	L1Md_F2	L1	chr10L1Md_F2113395481	NonProperStrand	1	chr10	113396618	113396708	LINE	Lx7	L1	chr10Lx7113396601	NonProperStrand	1	1	-inf
chr14	55963991	55964054	LINE	Lx7	L1	chr14Lx755962656	ProperStrand	1	chr9	44404345	44404385	Simple_repeat	(TTTC)n	Simple_repeat	chr9(TTTC)n44404215	NonProperStrand	1	1	-inf
chr11	8140707	8140807	LTR	RMER6C	ERVK	chr11RMER6C8140491	ProperStrand	1	chr11	8141019	8141109	SINE	B1F	Alu	chr11B1F8141024	NonProperStrand	1	1	-inf
chr5	31140707	31140762	protein_coding	Mapre3	intron	ENSMUSG00000029166	NonProperStrand	36	chr6	38556430	38556462	protein_coding	Luc7l2	intron	ENSMUSG00000029823	ProperStrand	46	1	-13.5923
chr5	65312407	65312427	LINE	L1_Mus3	L1	chr5L1_Mus365312165	NonProperStrand	8	chr17	39847572	39847946	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-6.7794
chr18	35554488	35554561	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr10	83014819	83014882	protein_coding	A230046K03Rik	intron	ENSMUSG00000034560	ProperStrand	68	1	-8.1642
chr6	120773642	120773742	SINE	B1_Mur3	Alu	chr6B1_Mur3120773643	ProperStrand	1	chr6	120773442	120773532	SINE	B2_Mm2	B2	chr6B2_Mm2120773371	ProperStrand	1	1	-inf
chr8	73041025	73041086	protein_coding	2810422J05Rik	intron	ENSMUSG00000055553	ProperStrand	23	chr16	93630141	93630200	pseudogene	Gm5678	.	ENSMUSG00000082815	ProperStrand	1	1	-inf
chr3	131247457	131247524	protein_coding	Papss1	intron	ENSMUSG00000028032	NonProperStrand	45	chr11	93307137	93307154	protein_coding	Car10	intron	ENSMUSG00000056158	NonProperStrand	10	1	-16.2845
chr8	45021956	45022086	LINE	Lx4B	L1	chr8Lx4B45021463	ProperStrand	1	chr10	120765406	120765423	SINE	B1_Mm	Alu	chr10B1_Mm120765328	ProperStrand	1	1	-inf
chr13	97190558	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr18	60545776	60545819	protein_coding	Iigp1	intron	ENSMUSG00000054072	ProperStrand	6	1	-9.8248
chr17	39846483	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	39933080	39933171	SINE	B3	B2	chr1B339933034	NonProperStrand	1	1	-inf
chr4	41227277	41227298	LTR	RLTR9F	ERVK	chr4RLTR9F41227133	ProperStrand	3	chr2	5379312	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr17	39843690	39843815	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr19	47896663	47896679	protein_coding	Wdr96	intron	ENSMUSG00000044948	NonProperStrand	8	1	-6.9216
chr8	36142198	36142288	SINE	MIR	MIR	chr8MIR36142136	ProperStrand	8	chr8	36142313	36142413	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n36142337	ProperStrand	8	8	-inf
chr13	44869574	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr9	118674949	118675017	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	24	-inf
chr10	50265396	50265486	LINE	L1Md_F2	L1	chr10L1Md_F250264697	ProperStrand	1	chr10	50265531	50265631	LINE	L1VL2	L1	chr10L1VL250265495	NonProperStrand	1	1	-inf
chr10	24553138	24553243	protein_coding	Enpp3	intron	ENSMUSG00000019989	ProperStrand	17	chr4	147861000	147861018	protein_coding	Mtor	exon	ENSMUSG00000028991	NonProperStrand	36	1	-15.6347
chrX	68712309	68712348	antisense	Gm16189	.	ENSMUSG00000085284	ProperStrand	10	chr15	38003858	38004051	protein_coding	Ubr5	intron	ENSMUSG00000037487	ProperStrand	87	1	-14.9423
chr17	39847636	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	106973886	106973986	LTR	MLT1C	MaLR	chr2MLT1C106973910	ProperStrand	1	1	-inf
chr1	89627058	89627123	SINE	B1F	Alu	chr1B1F89627034	ProperStrand	1	chr1	89611790	89611883	protein_coding	Inpp5d	exon	ENSMUSG00000026288	ProperStrand	439	1	-inf
chrX	90480563	90480663	LINE	L1Md_F3	L1	chrXL1Md_F390480245	NonProperStrand	1	chrX	90480723	90480813	LINE	Lx3C	L1	chrXLx3C90480665	NonProperStrand	1	1	-inf
chr8	124414297	124414439	protein_coding	Slc7a5	intron	ENSMUSG00000040010	ProperStrand	56	chr2	112836253	112836677	protein_coding	Ryr3	intron	ENSMUSG00000057378	ProperStrand	31	1	-13.4983
chr17	39847273	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	73064971	73065043	LTR	MTE2a	MaLR	chr5MTE2a73064949	ProperStrand	3	2	-9.8423
chr8	79684387	79684452	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	chr16	23110857	23110935	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-10.7491
chr15	72920434	72920493	SINE	PB1D7	Alu	chr15PB1D772920411	ProperStrand	3	chr19	5295334	5295415	protein_coding	Sf3b2	utr5	ENSMUSG00000024853	ProperStrand	58	3	-inf
chr18	33193445	33193545	protein_coding	Camk4	intron	ENSMUSG00000038128	NonProperStrand	36	chr7	19237985	19238075	protein_coding	Psg21	intron	ENSMUSG00000070796	NonProperStrand	12	1	-16.3711
chr1	164252693	164252813	protein_coding	Dnm3	intron	ENSMUSG00000040265	NonProperStrand	77	chr9	65201725	65201762	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	2	-16.6569
chr11	62329441	62329534	protein_coding-noncoding	Pigl	utr5	ENSMUSG00000014245	NonProperStrand	6	chr11	62325615	62327244	protein_coding	Pigl	utr3	ENSMUSG00000014245	NonProperStrand	26	4	-inf
chr19	41878046	41880154	SINE	B1F	Alu	chr19B1F41880067	ProperStrand	2	chr19	41880365	41880455	SINE	B1_Mus2	Alu	chr19B1_Mus241880315	NonProperStrand	3	2	-inf
chr8	109940168	109940268	protein_coding-noncoding	Nob1	utr3	ENSMUSG00000003848	NonProperStrand	2	chr8	109940056	109940146	protein_coding	Nob1	exon	ENSMUSG00000003848	NonProperStrand	2	2	-inf
chr4	62470754	62470771	LINE	L1MA8	L1	chr4L1MA862470628	ProperStrand	4	chr5	9103395	9103514	protein_coding	4930420K17Rik	intron	ENSMUSG00000079659	ProperStrand	16	1	-inf
chr5	146261256	146261281	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr10	128019160	128019244	protein_coding	Erbb3	intron	ENSMUSG00000018166	NonProperStrand	10	1	-15.0392
chr16	42884993	43420829	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr4	149120028	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	2	-5.6899
chr6	3201509	3201556	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	83926068	83926125	protein_coding	Zfml	intron	ENSMUSG00000030016	ProperStrand	53	1	-3.1176
chr11	34381012	34381082	protein_coding	Dock2	intron	ENSMUSG00000020143	NonProperStrand	17	chr11	34317096	34317142	protein_coding	Fam196b	intron	ENSMUSG00000069911	ProperStrand	3	1	-20.3649
chr19	8766127	8766217	LTR	RMER17B	ERVK	chr19RMER17B8765400	NonProperStrand	3	chr19	8766226	8766326	SINE	B1_Mus1	Alu	chr19B1_Mus18766237	NonProperStrand	1	1	-inf
chr17	39846682	39846764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	101293224	101293242	protein_coding	Ocln	intron	ENSMUSG00000021638	ProperStrand	4	1	-3.6552
chr9	99068371	99068471	LTR	RMER5	ERV1	chr9RMER599068135	NonProperStrand	1	chr9	99068480	99068572	SINE	B1_Mus2	Alu	chr9B1_Mus299068487	ProperStrand	1	1	-inf
chr9	54953230	54953329	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n54953155	ProperStrand	1	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	146261177	146261194	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	104636715	104636733	protein_coding	Ints4	intron	ENSMUSG00000025133	NonProperStrand	6	1	-9.7631
chr7	118541963	118543320	LINE	Lx4B	L1	chr7Lx4B118540674	ProperStrand	1	chr7	118543326	118543416	SINE	B1_Mus1	Alu	chr7B1_Mus1118543338	ProperStrand	1	1	-inf
chr17	39846456	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	7509506	7534391	protein_coding	Rtn3	intron	ENSMUSG00000024758	NonProperStrand	24	4	-3.8284
chr12	75535783	75535827	SINE	B4	B4	chr12B475535753	ProperStrand	1	chr4	110314629	110314663	protein_coding	Agbl4	intron	ENSMUSG00000061298	NonProperStrand	47	1	-inf
chr17	65395643	65395733	LTR	MTC-int	MaLR	chr17MTC-int65394883	ProperStrand	1	chr17	65396082	65396182	LTR	MTC	MaLR	chr17MTC65395827	ProperStrand	1	1	-inf
chr10	62467224	62467314	protein_coding-noncoding	Rufy2	utr3	ENSMUSG00000020070	NonProperStrand	5	chr10	62467114	62467214	protein_coding	Rufy2	utr3	ENSMUSG00000020070	NonProperStrand	9	2	-inf
chr7	28351075	28352187	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-8.4416
chr10	40298038	40298089	protein_coding	Slc22a16	intron	ENSMUSG00000019834	NonProperStrand	68	chr2	59634041	59634100	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	1	-10.0416
chr10	36824346	36824436	LINE	Lx5	L1	chr10Lx536822989	NonProperStrand	1	chr10	36824439	36824539	LTR	MLT1A1	MaLR	chr10MLT1A136824448	NonProperStrand	1	1	-inf
chr17	39847027	39847120	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	69732220	69732265	SINE	B2_Mm1t	B2	chr2B2_Mm1t69732232	ProperStrand	1	1	-inf
chr11	12444531	12444631	LTR	RMER17C-int	ERVK	chr11RMER17C-int12444284	ProperStrand	7	chr11	12444638	12444728	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n12444640	NonProperStrand	1	1	-inf
chrX	7938607	7938690	LINE	Lx3_Mus	L1	chrXLx3_Mus7937986	NonProperStrand	3	chr9	123462132	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr16	81652849	81652939	LINE	Lx7	L1	chr16Lx781652428	ProperStrand	1	chr16	81558028	81558128	protein_coding	Ncam2	intron	ENSMUSG00000022762	NonProperStrand	7	1	-inf
chr8	48721856	48721956	SINE	B2_Mm1a	B2	chr8B2_Mm1a48721820	ProperStrand	1	chr8	48721719	48721809	SINE	B3	B2	chr8B348721575	ProperStrand	1	1	-inf
chr11	109011655	109011858	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	44869574	44870016	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	14	-13.8603
chr11	52257719	52257791	SINE	B4A	B4	chr11B4A52257614	ProperStrand	1	chr5	134679851	134679908	protein_coding	Gtf2ird2	intron	ENSMUSG00000015942	NonProperStrand	9	1	-inf
chr6	84672571	84672630	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	chr17	47375400	47375486	protein_coding	Trerf1	intron	ENSMUSG00000064043	ProperStrand	109	1	-8.6119
chr11	76340549	76340568	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	1	-9.9739
chr17	67993860	67993919	LINE	L1VL2	L1	chr17L1VL267993583	NonProperStrand	1	chr17	39847366	39847399	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	105883811	105883911	LTR	ORR1E	MaLR	chr8ORR1E105883755	NonProperStrand	1	chr8	105883601	105883691	SINE	B4A	B4	chr8B4A105883574	ProperStrand	1	1	-inf
chr11	105841080	105841180	antisense	Gm11651	.	ENSMUSG00000085297	ProperStrand	1	chr11	105773785	105773875	protein_coding	Tanc2	intron	ENSMUSG00000053580	ProperStrand	21	1	-inf
chr6	5925760	5925779	antisense	1700019G24Rik	.	ENSMUSG00000085416	ProperStrand	3	chr8	70895757	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-16.9112
chr3	37838507	37838550	LINE	L1MA7	L1	chr3L1MA737838488	NonProperStrand	1	chr9	123461822	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	15910632	15910732	LTR	RLTR10-int	ERVK	chr3RLTR10-int15910142	NonProperStrand	2	chr3	15910041	15910131	LTR	RLTR10	ERVK	chr3RLTR1015909615	NonProperStrand	1	1	-inf
chr16	18251194	18251282	protein_coding-noncoding	Trmt2a	utr5	ENSMUSG00000022721	ProperStrand	4	chr5	125324313	125324367	protein_coding	Ccdc92	intron	ENSMUSG00000037979	ProperStrand	54	1	-17.9811
chr17	4082115	4082215	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr13	51725500	51763298	protein_coding	Secisbp2	intron	ENSMUSG00000035139	NonProperStrand	64	1	-7.5324
chr3	84129883	84129983	LINE	L1MA8	L1	chr3L1MA884129830	ProperStrand	1	chr3	84129597	84129687	LTR	ORR1E	MaLR	chr3ORR1E84129502	ProperStrand	1	1	-inf
chr13	112578206	112578311	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chrX	163999459	163999478	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	53	1	-4.4426
chrX	55354994	55355094	SINE	ID_B1	B4	chrXID_B155354908	ProperStrand	1	chrX	55355272	55355362	SINE	MIRb	MIR	chrXMIRb55355259	ProperStrand	1	1	-inf
chr12	78350923	78351010	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr9	28341525	28341545	protein_coding	Opcml	intron	ENSMUSG00000062257	NonProperStrand	29	1	-7.3422
chr7	99604272	99604362	LINE	L1M2	L1	chr7L1M299604257	ProperStrand	1	chr9	123461936	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	36539162	36539189	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	chr4	83233551	83233651	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-7.4214
chr2	127132920	127132977	LTR	RLTR23	ERV1	chr2RLTR23127132793	ProperStrand	1	chr2	127129549	127129584	Simple_repeat	(TCTA)n	Simple_repeat	chr2(TCTA)n127129052	NonProperStrand	1	1	-inf
chr6	90958712	90958750	LINE	Lx5	L1	chr6Lx590958358	NonProperStrand	1	chr13	112578250	112578309	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr18	73573281	73573355	LINE	Lx8	L1	chr18Lx873573135	ProperStrand	4	chr9	78113349	78113428	protein_coding	Gm3776	intron	ENSMUSG00000074181	ProperStrand	6	1	-inf
chr17	39847255	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	129133977	129134088	protein_coding	Il1a	intron	ENSMUSG00000027399	NonProperStrand	5	1	-4.3348
chr11	52410222	52410250	LTR	MTD	MaLR	chr11MTD52410122	NonProperStrand	2	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-14.0145
chr13	78978104	78978204	LINE	L1Md_T	L1	chr13L1Md_T78977831	ProperStrand	1	chr13	78977563	78977653	LINE	Lx3_Mus	L1	chr13Lx3_Mus78976675	ProperStrand	1	1	-inf
chr4	40853077	40853169	SINE	B1_Mur1	Alu	chr4B1_Mur140853014	NonProperStrand	1	chr4	40852327	40852368	SINE	B4A	B4	chr4B4A40852308	NonProperStrand	1	1	-inf
chr6	134947624	134947686	SINE	B1_Mus1	Alu	chr6B1_Mus1134947569	NonProperStrand	1	chr4	134827979	134828060	protein_coding	Clic4	intron	ENSMUSG00000037242	ProperStrand	53	1	-inf
chr3	97286632	97286664	LINE	L1_Mur2	L1	chr3L1_Mur297286417	NonProperStrand	1	chr3	152533894	152533934	protein_coding	St6galnac5	intron	ENSMUSG00000039037	ProperStrand	6	1	-inf
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	157461224	157461304	LTR	ORR1B2	MaLR	chrXORR1B2157461026	ProperStrand	12	1	-8.2893
chr17	35150029	35150615	protein_coding	Vars	intron	ENSMUSG00000007029	NonProperStrand	53	chr17	35153732	35160146	protein_coding	D17H6S56E-3	intron	ENSMUSG00000007030	NonProperStrand	151	4	-inf
chr14	7265546	7265645	protein_coding	Gm3629	intron	ENSMUSG00000056940	ProperStrand	8	chr14	3823560	3823650	protein_coding	Gm3002	intron	ENSMUSG00000079399	ProperStrand	51	1	-16.4975
chr11	95869538	95869579	LINE	L2a	L2	chr11L2a95869536	ProperStrand	1	chr9	123462056	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	113542949	113543039	protein_coding	Fancd2	intron	ENSMUSG00000034023	ProperStrand	35	chr17	30395631	30395731	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-8.3199
chr8	95865008	95865057	LINE	Lx5	L1	chr8Lx595864721	NonProperStrand	11	chr4	141597169	141597260	protein_coding	Tmem51	intron	ENSMUSG00000040616	ProperStrand	27	1	-17.0928
chr19	24119946	24119979	LINE	L1MB7	L1	chr19L1MB724119558	NonProperStrand	5	chr17	39847173	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr11	115852169	115852226	protein_coding	Itgb4	intron	ENSMUSG00000020758	ProperStrand	37	chr9	123461905	123461956	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.6303
chr2	126770931	126771021	SINE	B2_Mm2	B2	chr2B2_Mm2126770872	NonProperStrand	1	chr2	126770779	126770879	SINE	B3	B2	chr2B3126770742	ProperStrand	1	1	-inf
chr13	62544652	62544758	LTR	RNERVK23-int	ERVK	chr13RNERVK23-int62544176	NonProperStrand	4	chr6	3201478	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-8.3508
chr14	63900033	63900123	LTR	LTR50	ERVL	chr14LTR5063899931	ProperStrand	1	chr14	63900122	63900222	LTR	MTD	MaLR	chr14MTD63900113	ProperStrand	1	1	-inf
chr17	39846580	39847163	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	36594923	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	7	-4.6544
chr2	127958243	127958310	protein_coding	Bcl2l11	intron	ENSMUSG00000027381	ProperStrand	2	chr16	23111379	23111434	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	16	1	-inf
chr17	39848099	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	30765913	30765929	protein_coding	Dusp22	intron	ENSMUSG00000069255	ProperStrand	3	1	-7.3534
chr7	34237031	34237137	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int34233331	ProperStrand	1	chr7	34237416	34237462	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int34237287	ProperStrand	6	1	-inf
chr17	39846462	39846781	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	4174093	4178174	lincRNA	Gm11959	intron	ENSMUSG00000085559	ProperStrand	18	3	-3.4595
chr7	46575061	46575120	LINE	L1_Mur2	L1	chr7L1_Mur246574926	ProperStrand	3	chr7	46575364	46575441	LINE	Lx4B	L1	chr7Lx4B46575260	ProperStrand	2	2	-inf
chr10	51521895	51521926	LINE	Lx7	L1	chr10Lx751521251	ProperStrand	8	chr17	39847273	39847353	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr7	4891260	4891477	protein_coding	A430110N23Rik	intron	ENSMUSG00000035279	ProperStrand	4	chr6	72718138	72718238	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	2	-inf
chr6	140553008	140553051	LTR	RMER17C	ERVK	chr6RMER17C140552663	NonProperStrand	1	chr5	111335593	111335706	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	1	-inf
chr10	61483859	61483949	LTR	RMER10B	ERVL	chr10RMER10B61483719	ProperStrand	2	chr10	61484001	61484101	LTR	RMER10B	ERVL	chr10RMER10B61483982	ProperStrand	2	2	-inf
chr13	12681611	12681701	protein_coding	Ero1lb	intron	ENSMUSG00000057069	ProperStrand	1	chr13	12681894	12681994	snoRNA	ENSMUSG00000065158_SNORA73	.	ENSMUSG00000065158	ProperStrand	1	1	-inf
chr11	114836065	114836083	LTR	IAPEy-int	ERVK	chr11IAPEy-int114835899	NonProperStrand	1	chr4	125711869	125711885	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	1	-inf
chr5	146260994	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	mmu-miR-6240	2	24	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	1	-6.6378
chr5	93155991	93156062	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	chr6	148354881	148354920	protein_coding	Tmtc1	intron	ENSMUSG00000030306	NonProperStrand	51	1	-10.2839
chr1	194943453	194943568	protein_coding	Diexf	intron	ENSMUSG00000016181	NonProperStrand	2	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	2	-inf
chr4	155211251	155211341	SINE	B1_Mur2	Alu	chr4B1_Mur2155211228	NonProperStrand	3	chr4	155211083	155211183	SINE	B3	B2	chr4B3155211012	NonProperStrand	3	3	-inf
chrX	159601784	159601884	LTR	MT2C_Mm	ERVL	chrXMT2C_Mm159601786	NonProperStrand	2	chrX	159601704	159601794	LTR	MTE2b	MaLR	chrXMTE2b159601705	ProperStrand	2	2	-inf
chr2	150858458	150904430	LINE	L1Md_A	L1	chr2L1Md_A150877872	NonProperStrand	3	chr2	150904493	150904582	LINE	L1Md_A	L1	chr2L1Md_A150903316	NonProperStrand	8	3	-inf
chr13	23438687	23438733	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	NonProperStrand	29	chr16	28836119	28836170	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	1	-12.0838
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	28198925	28198953	protein_coding	Spnb4	intron	ENSMUSG00000011751	NonProperStrand	106	1	-5.6873
chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	chr2	112568727	112568863	protein_coding	Ryr3	intron	ENSMUSG00000057378	NonProperStrand	77	1	-11.4550
chr17	39847550	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	78012718	78012786	protein_coding	Atp5a1	utr5	ENSMUSG00000025428	ProperStrand	5	1	-3.2379
chr5	33499620	33499669	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	chr9	45458757	45458830	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	1	-5.5386
chr10	81181148	81181257	SINE	B1_Mur2	Alu	chr10B1_Mur281181201	NonProperStrand	29	chr3	96879866	96879975	protein_coding	Gja5	utr3	ENSMUSG00000057123	NonProperStrand	40	1	-14.3147
chr4	123488336	123491718	protein_coding-noncoding	Rhbdl2	utr5	ENSMUSG00000043333	NonProperStrand	7	chr4	123486675	123491809	protein_coding	Rhbdl2	intron	ENSMUSG00000043333	NonProperStrand	52	7	-inf
chr18	30340049	30340120	LINE	Lx5	L1	chr18Lx530339449	NonProperStrand	1	chr17	39846660	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	57662872	57662898	LTR	MT2A	ERVL	chr19MT2A57662594	ProperStrand	1	chr2	31202581	31202677	protein_coding	Hmcn2	intron	ENSMUSG00000055632	ProperStrand	328	1	-inf
chr11	109011820	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	149120029	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	ProperStrand	14	1	-9.0323
chr8	61396198	61396288	LINE	Lx7	L1	chr8Lx761396183	ProperStrand	3	chr8	61396339	61396439	SINE	B3A	B2	chr8B3A61396341	ProperStrand	1	1	-inf
chr3	116333668	116333758	protein_coding	Sass6	utr3	ENSMUSG00000027959	ProperStrand	3	chr3	116334077	116334177	protein_coding	Hiat1	utr3	ENSMUSG00000089911	NonProperStrand	2	1	-20.2824
chr8	83573892	83574527	LINE	Lx3_Mus	L1	chr8Lx3_Mus83571406	ProperStrand	29	chr5	31141804	31141873	protein_coding	Mapre3	intron	ENSMUSG00000029166	NonProperStrand	36	1	-14.5252
chr11	12236100	12236128	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr2	32311765	32311783	protein_coding	Naif1	utr3	ENSMUSG00000039164	NonProperStrand	7	1	-13.4717
chr6	124798107	124807741	protein_coding	Leprel2	utr5	ENSMUSG00000023191	ProperStrand	5	chr9	123461957	123462152	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-9.8714
chr11	115591146	115591236	SINE	B1_Mus1	Alu	chr11B1_Mus1115591161	NonProperStrand	1	chr11	115591043	115591143	SINE	B4	B4	chr11B4115591029	NonProperStrand	1	1	-inf
chr18	64505328	64505357	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-10.3443
chr17	39847734	39847762	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	70346840	70346891	processed_transcript	Gm20455	.	ENSMUSG00000092255	NonProperStrand	5	1	-3.2379
chr18	64887947	64888047	LINE	L1_Rod	L1	chr18L1_Rod64887940	ProperStrand	2	chr18	64887801	64887891	LTR	RLTR25B	ERVK	chr18RLTR25B64887416	ProperStrand	3	2	-inf
chr16	13358419	13358508	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	chr11	90520815	90520851	protein_coding	Tom1l1	intron	ENSMUSG00000020541	ProperStrand	15	1	-12.9643
chr6	39723478	39723542	LINE	L1M3	L1	chr6L1M339723430	ProperStrand	1	chr4	147250622	147250696	protein_coding	Mfn2	intron	ENSMUSG00000029020	NonProperStrand	3	1	-inf
chr6	49236496	49236552	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr6	50565528	50565562	SINE	B1_Mus1	Alu	chr6B1_Mus150565510	ProperStrand	4	1	-15.0097
chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	chr4	33415153	33415183	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	100	1	-12.9385
chr1	136419732	136419822	SINE	B1_Mus1	Alu	chr1B1_Mus1136419689	NonProperStrand	1	chr1	136419406	136419506	SINE	RSINE1	B4	chr1RSINE1136419408	NonProperStrand	1	1	-inf
chrX	41069814	41069914	LINE	Lx	L1	chrXLx41069657	NonProperStrand	1	chrX	41070270	41070360	Low_complexity	CT-rich	Low_complexity	chrXCT-rich41070295	NonProperStrand	1	1	-inf
chr17	39848098	39848159	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	141559949	141560025	LTR	RLTR11B	ERVK	chr6RLTR11B141559856	ProperStrand	2	1	-8.4422
chr17	39847277	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	74371086	74371130	LTR	RMER5	ERV1	chr4RMER574371093	NonProperStrand	1	1	-inf
chrX	159547051	159547114	LINE	L1Md_T	L1	chrXL1Md_T159546648	ProperStrand	1	chr17	39844024	39844077	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	1	-inf
chr5	100409874	100409954	SINE	B1F	Alu	chr5B1F100409896	ProperStrand	1	chr6	128764175	128764224	protein_coding	Klrb1b	utr3	ENSMUSG00000079298	ProperStrand	5	1	-inf
chr15	36597493	36598007	LTR	BGLII	ERVK	chr15BGLII36597454	NonProperStrand	8	chr13	97190563	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.2032
chr5	114852385	114852411	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr2	10036443	10036570	protein_coding	Itih2	intron	ENSMUSG00000037254	ProperStrand	40	1	-10.1199
chr10	122877156	122877207	protein_coding	Fam19a2	intron	ENSMUSG00000044071	ProperStrand	41	chr12	80872944	80873046	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	2	-16.7469
chr17	39846593	39846671	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	113812733	113812801	SINE	B4A	B4	chr13B4A113812701	ProperStrand	1	1	-inf
chr16	17636759	17636837	protein_coding	Smpd4	intron	ENSMUSG00000005899	ProperStrand	18	chr18	42338345	42338393	protein_coding	Plac8l1	utr3	ENSMUSG00000059455	NonProperStrand	6	1	-19.4462
chr3	135605137	135605156	SINE	RSINE1	B4	chr3RSINE1135605065	NonProperStrand	8	chr5	34384034	34384136	protein_coding	Poln	intron	ENSMUSG00000045102	NonProperStrand	133	1	-14.5701
chr17	39847277	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	68824576	68824595	protein_coding	Lass6	intron	ENSMUSG00000027035	NonProperStrand	8	1	-3.3803
chr11	120981321	120981406	LTR	MTA_Mm	MaLR	chr11MTA_Mm120981018	NonProperStrand	1	chr11	120981405	120981480	SINE	B3	B2	chr11B3120981420	NonProperStrand	1	1	-inf
chr18	9081816	9081906	LINE	Lx9	L1	chr18Lx99080706	ProperStrand	1	chr18	9082216	9082316	SINE	B3A	B2	chr18B3A9082232	ProperStrand	1	1	-inf
chr19	30092344	30092434	LTR	RLTR17	ERVK	chr19RLTR1730092159	ProperStrand	1	chr8	91542677	91542777	LTR	MLT1C	MaLR	chr8MLT1C91542429	ProperStrand	2	1	-inf
chr7	143294743	143294833	LINE	Lx9	L1	chr7Lx9143294740	ProperStrand	4	chr17	17126046	17126146	SINE	B2_Mm2	B2	chr17B2_Mm217126052	NonProperStrand	1	1	-inf
chr5	33515164	33515248	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr17	56797932	56798006	protein_coding	Tmem146	intron	ENSMUSG00000040828	NonProperStrand	78	1	-8.6213
chr1	118650513	118650580	LINE	L1_Mus3	L1	chr1L1_Mus3118650319	ProperStrand	1	chr2	22744843	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-inf
chr8	64754399	64758195	LINE	Lx2B	L1	chr8Lx2B64757536	NonProperStrand	14	chr8	64752837	64754391	LTR	MLT2B2	ERVL	chr8MLT2B264754250	NonProperStrand	7	7	-inf
chr17	39847444	39847471	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	93913817	93913836	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n93913817	ProperStrand	1	1	-inf
chr5	107746788	107746888	DNA	URR1B	MER1_type	chr5URR1B107746809	NonProperStrand	1	chr5	107746972	107747062	LTR	MTD	MaLR	chr5MTD107746950	ProperStrand	1	1	-inf
chr5	56386901	56386919	LINE	Lx6	L1	chr5Lx656386441	ProperStrand	2	chr17	39847837	39847862	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39847468	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	69853196	69853213	protein_coding	Gabra3	intron	ENSMUSG00000031343	ProperStrand	4	1	-3.7035
chr5	146261265	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr8	73257409	73257510	protein_coding	Pde4c	intron	ENSMUSG00000031842	NonProperStrand	22	1	-9.9021
chr11	82943616	82943635	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	14	chr2	73012739	73012768	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	1	-14.5127
chr14	70153635	70153700	lincRNA	Gm16867	intron	ENSMUSG00000085092	ProperStrand	41	chr4	32887813	32887868	protein_coding-noncoding	Lyrm2	utr5	ENSMUSG00000045854	NonProperStrand	8	1	-16.9642
chr13	102413490	102413580	LTR	MTC-int	MaLR	chr13MTC-int102413421	ProperStrand	1	chr13	102413303	102413403	LTR	MTC	MaLR	chr13MTC102413289	ProperStrand	1	1	-inf
chr12	79208999	79209016	LINE	Lx7	L1	chr12Lx779207909	ProperStrand	1	chr10	80795159	80795267	protein_coding	Tbxa2r	utr5	ENSMUSG00000034881	ProperStrand	21	1	-inf
chr19	53641586	53641632	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n53641459	ProperStrand	6	chr19	53644766	53644835	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n53644745	ProperStrand	1	1	-inf
chr10	81462217	81462317	LTR	ORR1B1	MaLR	chr10ORR1B181461894	NonProperStrand	3	chr10	81462314	81462731	LTR	ORR1C1	MaLR	chr10ORR1C181462299	ProperStrand	3	3	-inf
chr10	67113079	67113126	LTR	LTR50	ERVL	chr10LTR5067113069	ProperStrand	1	chr10	67114909	67114966	LTR	RLTR28	ERVL	chr10RLTR2867114914	NonProperStrand	4	1	-inf
chr2	31051626	31051726	protein_coding	Gpr107	intron	ENSMUSG00000000194	NonProperStrand	164	chr12	41397135	41397225	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-6.6403
chr17	39843725	39843771	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr15	34526190	34526246	protein_coding	Nipal2	intron	ENSMUSG00000038879	NonProperStrand	22	1	-4.8672
chr1	186088588	186088731	LINE	L1MD	L1	chr1L1MD186088601	ProperStrand	5	chr1	186088492	186088603	LTR	MTE2b	MaLR	chr1MTE2b186088479	ProperStrand	4	4	-inf
chr17	54321645	54321745	LTR	MTEa	MaLR	chr17MTEa54321593	NonProperStrand	1	chr17	54321358	54321448	LTR	RMER13A	ERVK	chr17RMER13A54320964	ProperStrand	1	1	-inf
chr2	180698909	180698961	antisense	Gm14341	.	ENSMUSG00000087293	NonProperStrand	32	chrX	84308306	84308360	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	ProperStrand	52	1	-13.5816
chr6	3201509	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	114082973	114083104	protein_coding	Cmklr1	intron	ENSMUSG00000042190	ProperStrand	7	1	-7.1107
chr6	135832500	135832591	antisense	Gm14330	.	ENSMUSG00000086614	ProperStrand	1	chr6	135832665	135832765	protein_coding	Grin2b	intron	ENSMUSG00000030209	NonProperStrand	18	1	-inf
chr13	64193934	64194024	LTR	ORR1E	MaLR	chr13ORR1E64193938	ProperStrand	3	chr15	72994533	72994632	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	1	-18.1712
chr5	64807848	64807948	LTR	ORR1A2-int	MaLR	chr5ORR1A2-int64807854	NonProperStrand	15	chr5	64807751	64807841	LTR	ORR1A2	MaLR	chr5ORR1A264807527	NonProperStrand	4	2	-inf
chr13	114066985	114067049	LTR	IAPEz-int	ERVK	chr13IAPEz-int114063503	ProperStrand	37	chr11	3231776	3231850	protein_coding	Pik3ip1	intron	ENSMUSG00000034614	ProperStrand	11	1	-16.5141
chr9	3414967	3415020	protein_coding	Cwf19l2	intron	ENSMUSG00000025898	ProperStrand	36	chr7	28929820	28929886	protein_coding	9530053A07Rik	intron	ENSMUSG00000078776	NonProperStrand	96	1	-12.1093
chr9	106430005	106430362	LINE	Lx8	L1	chr9Lx8106430222	ProperStrand	4	chr17	39846919	39847008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr7	25026003	25026059	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int25025851	ProperStrand	1	chr7	25033648	25033737	LTR	RLTR13D1	ERVK	chr7RLTR13D125033368	NonProperStrand	5	1	-inf
chr16	50227565	50227605	protein_coding	Bbx	intron	ENSMUSG00000022641	ProperStrand	76	chr5	131922738	131922824	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-6.7382
chr19	51142569	51142595	LINE	Lx3_Mus	L1	chr19Lx3_Mus51141674	ProperStrand	11	chr4	118433490	118433568	LTR	RLTR45-int	ERVK	chr4RLTR45-int118433449	ProperStrand	2	2	-inf
chr2	173737900	173737980	LINE	Lx7	L1	chr2Lx7173737121	NonProperStrand	1	chr17	39847531	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	5082277	5082348	DNA	URR1B	MER1_type	chr11URR1B5082219	NonProperStrand	9	chr9	110281293	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-11.4396
chr3	89523851	89523894	protein_coding	Adar	intron	ENSMUSG00000027951	ProperStrand	2	chr9	118674952	118675005	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr5	114851994	114852015	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr14	27408560	27408650	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-9.2376
chr17	39842997	39843024	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr5	123157861	123158403	protein_coding	P2rx4	intron	ENSMUSG00000029470	ProperStrand	14	1	-8.3033
chr9	67612619	67612663	SINE	RSINE1	B4	chr9RSINE167612595	ProperStrand	1	chr9	15314889	15314929	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-inf
chrX	73026624	73026689	SINE	B1_Mm	Alu	chrXB1_Mm73026625	ProperStrand	5	chr9	123461876	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr7	139568278	139568381	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	chr8	48138337	48138375	protein_coding	Enpp6	intron	ENSMUSG00000038173	ProperStrand	45	1	-8.7214
chr4	154969258	154969358	LTR	RLTR33	ERVK	chr4RLTR33154969147	ProperStrand	1	chr4	154969452	154969542	SINE	B2_Mm2	B2	chr4B2_Mm2154969437	NonProperStrand	1	1	-inf
chr10	82231879	82231910	Other	RMER1B	Other	chr10RMER1B82231385	ProperStrand	1	chr1	7119325	7119419	protein_coding	Pcmtd1	intron	ENSMUSG00000051285	ProperStrand	119	1	-inf
chr7	12930819	12930840	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr4	116602124	116602749	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-9.6599
chr17	39847845	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	126696616	126696674	LTR	MERVL_2A-int	ERVL	chr7MERVL_2A-int126695290	ProperStrand	2	1	-5.4040
chr9	71956809	71956853	protein_coding	Tcf12	intron	ENSMUSG00000032228	ProperStrand	21	chr5	144914714	144914760	protein_coding	Lmtk2	intron	ENSMUSG00000038970	NonProperStrand	132	1	-12.5677
chr19	14457632	14457719	DNA	Kanga11a	Tc2	chr19Kanga11a14457458	NonProperStrand	2	chr17	39848099	39848157	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr8	114816715	114816763	LTR	ORR1E	MaLR	chr8ORR1E114816637	NonProperStrand	5	chr15	62183152	62183243	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	1	-11.3564
chr14	56688447	56689043	LTR	MTA_Mm	MaLR	chr14MTA_Mm56688246	NonProperStrand	2	chr19	8724923	8724943	SINE	B3A	B2	chr19B3A8724791	NonProperStrand	14	1	-19.5799
chr5	136982533	136982575	protein_coding	Cux1	intron	ENSMUSG00000029705	ProperStrand	30	chr7	27345179	27345282	protein_coding	Nlrp9a	intron	ENSMUSG00000054102	NonProperStrand	76	1	-12.9494
chr10	21480511	21480530	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	11	chr17	39843588	39843617	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-5.7931
chr15	55015299	55015352	protein_coding	Deptor	intron	ENSMUSG00000022419	NonProperStrand	21	chr8	18657121	18657186	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	2	-14.3563
chr19	5800822	5800922	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr7	141326775	141326865	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	2	-4.2923
chr15	80078500	80078589	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	3	-6.1673
chr4	101739845	101739935	LINE	L1MA8	L1	chr4L1MA8101739691	NonProperStrand	1	chr4	101739426	101739526	SINE	B4	B4	chr4B4101739341	NonProperStrand	1	1	-inf
chr5	149905816	149905906	LTR	MTC	MaLR	chr5MTC149905491	NonProperStrand	1	chr5	149905940	149906040	SINE	B3	B2	chr5B3149905883	ProperStrand	1	1	-inf
chr13	113816098	113816188	DNA	MER33	MER1_type	chr13MER33113816111	ProperStrand	2	chr13	113816252	113816352	SINE	B1_Mus1	Alu	chr13B1_Mus1113816239	NonProperStrand	5	2	-inf
chr10	121867025	121867115	LINE	Lx3_Mus	L1	chr10Lx3_Mus121866881	NonProperStrand	3	chr7	30458358	30458458	LTR	RLTR33	ERVK	chr7RLTR3330458075	ProperStrand	3	3	-inf
chr5	65389539	65389582	protein_coding	Fam114a1	intron	ENSMUSG00000029185	NonProperStrand	71	chr2	33213797	33213879	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-7.8808
chrX	66659597	66659613	protein_coding	Aff2	intron	ENSMUSG00000031189	ProperStrand	8	chr1	72226239	72226350	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-15.4902
chr18	11738213	11738267	LINE	L1_Mur1	L1	chr18L1_Mur111737759	ProperStrand	1	chr14	67065722	67065776	Other	RMER1A	Other	chr14RMER1A67065552	NonProperStrand	2	1	-inf
chr4	74363246	74363336	LINE	L1Md_F2	L1	chr4L1Md_F274362761	ProperStrand	1	chr4	74363354	74363454	LINE	L1Md_F2	L1	chr4L1Md_F274363311	ProperStrand	3	1	-inf
chr6	56938500	56938590	LINE	L1_Mus1	L1	chr6L1_Mus156938516	NonProperStrand	1	chr6	56938990	56939090	LTR	LTRIS_Mus	ERV1	chr6LTRIS_Mus56938774	ProperStrand	1	1	-inf
chr9	20854144	20854234	LTR	RodERV21-int	ERV1	chr9RodERV21-int20854153	NonProperStrand	1	chr9	20854274	20854374	SINE	B1_Mus1	Alu	chr9B1_Mus120854271	NonProperStrand	1	1	-inf
chr9	77544735	77544783	LINE	L1Md_A	L1	chr9L1Md_A77544734	NonProperStrand	1	chr9	77472207	77499268	protein_coding	Klhl31	intron	ENSMUSG00000044938	NonProperStrand	35	1	-inf
chr9	63730968	63731042	LINE	L1MB3	L1	chr9L1MB363730563	NonProperStrand	1	chr17	39846807	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	95716812	95716902	LINE	L1_Mur2	L1	chr2L1_Mur295716642	NonProperStrand	1	chr2	95716454	95716554	Simple_repeat	(GAA)n	Simple_repeat	chr2(GAA)n95716462	NonProperStrand	1	1	-inf
chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	114554361	114554452	SINE	RSINE1	B4	chr9RSINE1114554295	ProperStrand	2	1	-5.3533
chr17	59315561	59315651	LINE	Lx4B	L1	chr17Lx4B59315551	ProperStrand	1	chr17	59315213	59315313	LTR	RLTR11B	ERVK	chr17RLTR11B59315143	ProperStrand	1	1	-inf
chr3	93549816	93549916	LINE	L1_Mur3	L1	chr3L1_Mur393549718	NonProperStrand	1	chr3	93549991	93550081	SINE	B2_Mm1a	B2	chr3B2_Mm1a93549929	NonProperStrand	1	1	-inf
chr4	134108316	134108334	SINE	B1F2	Alu	chr4B1F2134108266	ProperStrand	1	chr12	105221224	105221335	protein_coding	Serpina11	intron	ENSMUSG00000063232	ProperStrand	6	1	-inf
chr16	52157872	52157923	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	chr2	140123619	140123663	protein_coding	Sel1l2	intron	ENSMUSG00000074764	ProperStrand	15	1	-13.9416
chr9	108485868	108485884	protein_coding	P4htm	intron	ENSMUSG00000006675	ProperStrand	1	chr2	39001621	39001723	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	1	-inf
chr1	179529090	179529180	LINE	Lx8	L1	chr1Lx8179529037	NonProperStrand	1	chr1	179529375	179529475	SINE	B3	B2	chr1B3179529352	NonProperStrand	1	1	-inf
chr8	87729503	87729603	LINE	Lx5	L1	chr8Lx587727937	NonProperStrand	13	chr8	87707402	87707492	LTR	ETnERV2-int	ERVK	chr8ETnERV2-int87706571	ProperStrand	8	5	-inf
chr17	39847381	39847428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	88954853	88954871	protein_coding	Gm2022	intron	ENSMUSG00000071217	ProperStrand	5	1	-3.2379
chr8	86843473	86843573	LTR	ORR1B1	MaLR	chr8ORR1B186843337	NonProperStrand	10	chr8	86843568	86843658	LTR	RMER19B	ERVK	chr8RMER19B86843551	ProperStrand	11	9	-inf
chrX	74235384	74235484	LINE	L1Md_F2	L1	chrXL1Md_F274233133	ProperStrand	9	chrX	74235638	74235728	LINE	L1Md_F2	L1	chrXL1Md_F274235532	NonProperStrand	8	4	-inf
chr11	109362970	109363075	protein_coding	Arsg	intron	ENSMUSG00000020604	ProperStrand	62	chr17	56768453	56768499	protein_coding	Tmem146	intron	ENSMUSG00000040828	ProperStrand	17	1	-14.5218
chr19	5798911	5798963	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr8	13179628	13179670	protein_coding	Grtp1	exon	ENSMUSG00000038515	NonProperStrand	13	1	-7.4765
chr2	28514790	28514852	protein_coding	Tsc1	intron	ENSMUSG00000026812	ProperStrand	110	chr5	36629685	36629748	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-8.4555
chr11	117761967	117762057	LTR	RLTR10	ERVK	chr11RLTR10117761536	NonProperStrand	5	chr11	117762093	117762193	Simple_repeat	(CACCC)n	Simple_repeat	chr11(CACCC)n117762097	ProperStrand	2	2	-inf
chr13	45390393	45390493	LINE	L1M5	L1	chr13L1M545390365	ProperStrand	2	chr13	45390273	45390363	misc_RNA	7SK	.	ENSMUSG00000088203	NonProperStrand	2	2	-inf
chr13	44869574	44869623	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	58346445	58346484	pseudogene	Gm12255	.	ENSMUSG00000083501	NonProperStrand	4	1	-10.0813
chr19	32517873	32517946	LTR	IAPEz-int	ERVK	chr19IAPEz-int32516691	ProperStrand	2	chr16	87415655	87415672	protein_coding	Ltn1	intron	ENSMUSG00000052299	ProperStrand	28	1	-21.0040
chr15	85177751	85177780	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-7.2379
chr5	120197976	120198076	SINE	B1_Mus1	Alu	chr5B1_Mus1120197963	NonProperStrand	4	chr5	120186286	120197919	SINE	RSINE1	B4	chr5RSINE1120186224	NonProperStrand	3	3	-inf
chr13	112578220	112578299	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr8	17456214	17456233	protein_coding	Csmd1	intron	ENSMUSG00000060924	ProperStrand	35	1	-5.2458
chr11	31470255	31470355	LINE	L1_Mur3	L1	chr11L1_Mur331470209	ProperStrand	1	chr11	31470107	31470197	SINE	B4	B4	chr11B431470074	NonProperStrand	1	1	-inf
chr9	14797166	14799589	LTR	MLT1A0	MaLR	chr9MLT1A014799530	NonProperStrand	2	chr9	14795832	14797085	LTR	MT2A	ERVL	chr9MT2A14796943	NonProperStrand	7	1	-21.1088
chr10	75520612	75520729	protein_coding	Slc5a4b	utr3	ENSMUSG00000020226	NonProperStrand	34	chr8	88257927	88257970	protein_coding	Itfg1	intron	ENSMUSG00000031703	NonProperStrand	27	1	-14.7914
chr4	109865013	109865110	LINE	L1Md_T	L1	chr4L1Md_T109865000	ProperStrand	1	chr17	39848036	39848074	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	25503558	25503648	LINE	Lx9	L1	chr8Lx925503556	ProperStrand	1	chr8	25503249	25503349	Simple_repeat	(TATAA)n	Simple_repeat	chr8(TATAA)n25503205	NonProperStrand	1	1	-inf
chr5	32683481	32683581	DNA	MER5A	MER1_type	chr5MER5A32683437	NonProperStrand	1	chr5	23521345	23521435	protein_coding	Fam126a	intron	ENSMUSG00000028995	ProperStrand	48	1	-inf
chr13	114072043	114072105	LINE	L1Md_T	L1	chr13L1Md_T114070289	NonProperStrand	45	chr13	113971620	113971667	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-9.0646
chr13	97190566	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr1	176828969	176831076	protein_coding	Grem2	intron	ENSMUSG00000050069	NonProperStrand	18	1	-7.5176
chr17	39846747	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	30874441	30874482	SINE	RSINE1	B4	chr3RSINE130874343	NonProperStrand	1	1	-inf
chr17	39848637	39848704	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	75463972	75464003	lincRNA	Fam169b	intron	ENSMUSG00000074071	ProperStrand	17	1	-3.9354
chr19	5796050	5796099	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr1	127780319	127780418	protein_coding	Lypd1	intron	ENSMUSG00000026344	NonProperStrand	85	1	-3.7822
chr2	29502375	29502479	protein_coding	Rapgef1	intron	ENSMUSG00000039844	ProperStrand	77	chr3	29082385	29082406	protein_coding	Egfem1	intron	ENSMUSG00000063600	ProperStrand	16	1	-14.2139
chr7	113279487	113279503	LINE	Lx5	L1	chr7Lx5113278089	NonProperStrand	8	chr6	94526817	94526881	protein_coding	Slc25a26	intron	ENSMUSG00000045100	ProperStrand	34	1	-17.3098
chr15	81899212	81903556	protein_coding	Mei1	intron	ENSMUSG00000068117	ProperStrand	63	chr17	35013314	35013666	protein_coding	Gm20547	exon	ENSMUSG00000092511	NonProperStrand	14	2	-19.5293
chr17	39846453	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	59700927	59702833	protein_coding-noncoding	Sumo1	utr3	ENSMUSG00000026021	NonProperStrand	2	1	-5.3533
chr14	64431044	64431081	protein_coding	Xkr6	intron	ENSMUSG00000035067	NonProperStrand	62	chr17	8330574	8330601	protein_coding	Rnaset2a	intron	ENSMUSG00000073469	NonProperStrand	6	2	-inf
chr5	108106644	108106731	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr16	17110911	17110981	protein_coding	Ppil2	intron	ENSMUSG00000022771	ProperStrand	23	1	-14.4600
chr6	3201430	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	45335243	45335263	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	2	-4.4912
chr5	30060672	30060762	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	chr12	67667951	67668051	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	4	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr17	63169957	63170018	protein_coding	Efna5	intron	ENSMUSG00000048915	ProperStrand	104	1	-4.8993
chr14	54667344	54667376	LINE	Lx	L1	chr14Lx54667068	ProperStrand	1	chr14	54667990	54668024	LTR	ERVL-E-int	ERVL	chr14ERVL-E-int54667887	NonProperStrand	1	1	-inf
chr12	102629124	102629229	LINE	Lx4B	L1	chr12Lx4B102627938	NonProperStrand	4	chr6	27269104	27269122	protein_coding	Grm8	intron	ENSMUSG00000024211	NonProperStrand	26	1	-20.6287
chr9	33459137	33459227	LTR	MTE-int	MaLR	chr9MTE-int33458850	NonProperStrand	1	chr9	33459475	33459575	LTR	MTEb	MaLR	chr9MTEb33459404	NonProperStrand	1	1	-inf
chr6	130553571	130553671	LINE	Lx	L1	chr6Lx130553250	ProperStrand	1	chr6	130553789	130553879	LTR	ORR1D1	MaLR	chr6ORR1D1130553794	NonProperStrand	1	1	-inf
chr12	108623046	108623125	LINE	L1Md_A	L1	chr12L1Md_A108622920	NonProperStrand	1	chr17	39846410	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	5422934	5422972	protein_coding	Xbp1	intron	ENSMUSG00000020484	NonProperStrand	6	chr13	59621660	59621751	protein_coding	Agtpbp1	intron	ENSMUSG00000021557	NonProperStrand	51	1	-17.1848
chr17	39847226	39847326	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	90835794	90835884	protein_coding	Adcy7	intron	ENSMUSG00000031659	NonProperStrand	4	1	-4.8204
chr17	64078872	64078889	LINE	L1_Mm	L1	chr17L1_Mm64078624	ProperStrand	10	chr3	89244998	89245019	protein_coding	Pbxip1	intron	ENSMUSG00000042613	NonProperStrand	3	1	-20.3349
chr5	33529215	33529305	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int33529161	NonProperStrand	15	chr5	33522886	33522934	LTR	RMER19B	ERVK	chr5RMER19B33522470	NonProperStrand	18	1	-17.2963
chr14	19751452	19751525	LINE	L1_Mus1	L1	chr14L1_Mus119749429	ProperStrand	53	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.2155
chr9	17987806	17987832	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-10.5884
chr8	69807619	69807693	LINE	Lx4A	L1	chr8Lx4A69805765	ProperStrand	4	chr1	10346618	10346637	protein_coding	Cpa6	intron	ENSMUSG00000042501	NonProperStrand	7	1	-inf
chr14	70743113	70743134	protein_coding	Slc39a14	intron	ENSMUSG00000022094	ProperStrand	17	chr9	56223967	56224051	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-11.0547
chr1	13657382	13657472	LTR	RMER10A	ERVL	chr1RMER10A13657318	NonProperStrand	1	chr1	13657504	13657604	SINE	B1_Mus1	Alu	chr1B1_Mus113657528	NonProperStrand	1	1	-inf
chr5	136563422	136563514	protein_coding	Rasa4	intron	ENSMUSG00000004952	NonProperStrand	21	chrX	13152171	13152199	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-12.2070
chr19	24168394	24168441	LTR	RLTR16	ERVK	chr19RLTR1624168214	NonProperStrand	4	chr4	102764760	102764817	protein_coding	Wdr78	intron	ENSMUSG00000035126	NonProperStrand	5	1	-inf
chr13	16147166	16147266	LINE	L1_Mus1	L1	chr13L1_Mus116147063	NonProperStrand	1	chr13	16147368	16147458	LTR	MTD-int	MaLR	chr13MTD-int16147288	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	72692093	72748680	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	2	-5.7072
chr14	30568281	30568343	LTR	MTE2b	MaLR	chr14MTE2b30568064	ProperStrand	2	chr14	30573488	30573582	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n30573333	ProperStrand	7	1	-21.1088
chr15	72994534	72994606	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	chr3	58653525	58653588	protein_coding	Clrn1	intron	ENSMUSG00000043850	ProperStrand	16	2	-inf
chr1	89930920	89931001	LINE	L1Md_A	L1	chr1L1Md_A89925217	ProperStrand	5	chr17	39847256	39847326	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr15	84475192	84475292	Simple_repeat	(CAG)n	Simple_repeat	chr15(CAG)n84475172	ProperStrand	1	chr15	84475022	84475112	Simple_repeat	(GAA)n	Simple_repeat	chr15(GAA)n84474992	ProperStrand	1	1	-inf
chr15	81491615	81491715	SINE	B3	B2	chr15B381491622	ProperStrand	1	chr15	81492049	81492139	SINE	B3A	B2	chr15B3A81492069	ProperStrand	1	1	-inf
chr17	39846419	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	130159579	130159595	protein_coding	Ubxn4	intron	ENSMUSG00000026353	ProperStrand	3	1	-4.3017
chr16	30388745	30388835	protein_coding-noncoding	Atp13a3	utr3	ENSMUSG00000022533	ProperStrand	3	chr16	30388615	30388715	protein_coding	Atp13a3	utr5	ENSMUSG00000022533	ProperStrand	59	1	-18.3348
chr6	88403502	88403544	SINE	B3	B2	chr6B388403510	ProperStrand	2	chr6	88385696	88385803	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	2	-inf
chr11	93898907	93898997	protein_coding	Spag9	intron	ENSMUSG00000020859	NonProperStrand	74	chr11	93898797	93898897	pseudogene	Gm11518	.	ENSMUSG00000081604	ProperStrand	1	1	-inf
chr1	118940420	118940449	LINE	L1Md_F2	L1	chr1L1Md_F2118939744	NonProperStrand	8	chr1	118938373	118938412	SINE	B4A	B4	chr1B4A118938254	ProperStrand	3	3	-inf
chr13	9422975	9423095	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	chr13	113835788	113835815	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	1	-7.2290
chr11	97044654	97047057	protein_coding	Kpnb1	intron	ENSMUSG00000001440	NonProperStrand	15	chr10	82169442	82169503	protein_coding	Hcfc2	intron	ENSMUSG00000020246	ProperStrand	29	1	-16.3059
chr7	30241661	30241727	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	ProperStrand	147	chr9	78520716	78520756	protein_coding	Cd109	intron	ENSMUSG00000046186	ProperStrand	25	1	-11.9956
chr14	79862088	79862135	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	30	chr16	48589255	48589349	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	1	-15.2883
chr1	49012959	49013049	LINE	L1_Mus2	L1	chr1L1_Mus249012301	ProperStrand	1	chr18	89707736	89707836	protein_coding	Dok6	intron	ENSMUSG00000073514	NonProperStrand	10	1	-inf
chr14	30568354	30569035	LTR	MT2A	ERVL	chr14MT2A30568732	ProperStrand	3	chr17	88056385	88056464	LTR	RMER16-int	ERVK	chr17RMER16-int88055642	NonProperStrand	2	1	-20.2824
chr17	39846411	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	137541420	137541696	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n137541139	ProperStrand	19	3	-3.2776
chr11	116757691	116757746	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr17	30148152	30148217	protein_coding	Zfand3	intron	ENSMUSG00000044477	ProperStrand	97	1	-11.6824
chr9	96102444	96102463	protein_coding	Tfdp2	intron	ENSMUSG00000032411	NonProperStrand	3	chr13	97190593	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr5	72792888	72792972	protein_coding	Corin	intron	ENSMUSG00000005220	ProperStrand	23	chr8	67484153	67484174	protein_coding	Tmem192	intron	ENSMUSG00000025521	NonProperStrand	3	2	-20.6169
chr1	143606560	143606665	LINE	Lx3_Mus	L1	chr1Lx3_Mus143605779	ProperStrand	1	chr17	39847136	39847175	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr18	4955915	4955986	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr4	132270079	132270130	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-7.8837
chr2	61723161	61723260	LINE	L1_Mus2	L1	chr2L1_Mus261723081	ProperStrand	1	chr2	61722948	61723038	LTR	LTRIS_Mus	ERV1	chr2LTRIS_Mus61722503	ProperStrand	2	1	-inf
chr17	39848576	39848617	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	178044077	178044176	protein_coding	Phactr3	intron	ENSMUSG00000027525	ProperStrand	26	1	-3.1396
chr6	3200905	3201572	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	123461798	123462190	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	140	-5.4484
chr9	123461792	123462159	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	149120028	149120048	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	45	-inf
chr11	95863933	95863949	protein_coding	Igf2bp1	intron	ENSMUSG00000013415	ProperStrand	6	chr5	142428567	142428626	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-13.5211
chr17	39847030	39847059	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	93365146	93365185	LTR	MTB	MaLR	chr1MTB93364778	NonProperStrand	1	1	-inf
chr9	21670558	21673200	SINE	B1_Mur3	Alu	chr9B1_Mur321672020	ProperStrand	3	chr19	5796874	5796974	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	2	-17.7688
chr19	44305077	44305157	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	chr15	83149727	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-8.1493
chr7	46850312	46850894	LINE	L1_Mus1	L1	chr7L1_Mus146850082	ProperStrand	37	chr2	5379266	5379340	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.4866
chr13	97487190	97487225	LTR	MTD	MaLR	chr13MTD97487052	ProperStrand	5	chr19	29760392	29760417	LTR	RLTR6_Mm	ERV1	chr19RLTR6_Mm29760105	NonProperStrand	1	1	-inf
chr17	39846453	39846483	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	55301841	55302889	SINE	B3	B2	chr13B355302695	ProperStrand	1	1	-inf
chr10	95309191	95309280	LINE	L1MB3	L1	chr10L1MB395309147	NonProperStrand	2	chr17	39847345	39847385	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39846433	39846465	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	13805237	13805332	LTR	RLTR23	ERV1	chr9RLTR2313804900	NonProperStrand	1	1	-inf
chr7	116298871	116298944	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	chr7	141067552	141067702	protein_coding	Fank1	intron	ENSMUSG00000053111	ProperStrand	73	1	-9.5630
chr7	30435762	30436026	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int30435973	NonProperStrand	2	chr7	30436853	30436869	SINE	B1_Mm	Alu	chr7B1_Mm30436844	ProperStrand	1	1	-inf
chr17	24164765	24164855	LTR	MTC-int	MaLR	chr17MTC-int24164662	ProperStrand	12	chr17	24164523	24164713	Other	RMER1A	Other	chr17RMER1A24163704	ProperStrand	20	3	-inf
chr2	135860345	135860397	LINE	L1_Mur3	L1	chr2L1_Mur3135859586	NonProperStrand	1	chrX	102185035	102185083	SINE	B3A	B2	chrXB3A102185029	ProperStrand	4	1	-inf
chr1	59949241	59949341	LTR	ORR1B2	MaLR	chr1ORR1B259949229	NonProperStrand	7	chr1	59949121	59949211	SINE	ID	ID	chr1ID59949147	NonProperStrand	7	7	-inf
chr15	23430212	23430228	LINE	L1_Mur2	L1	chr15L1_Mur223429777	NonProperStrand	4	chr8	95741855	95741874	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-17.8071
chr8	69972325	69972424	LTR	RLTR13C2	ERVK	chr8RLTR13C269971647	NonProperStrand	2	chr8	69972438	69972528	SINE	B4A	B4	chr8B4A69972450	NonProperStrand	1	1	-inf
chr17	39845957	39846002	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	6363415	6363503	protein_coding-noncoding	Gm16532	utr5	ENSMUSG00000045929	ProperStrand	2	1	-9.0607
chr2	34773200	34773268	LTR	ORR1A4-int	MaLR	chr2ORR1A4-int34772235	NonProperStrand	34	chr17	45566329	45566372	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-9.9435
chr12	102476315	102476337	LINE	L1Md_F2	L1	chr12L1Md_F2102473512	NonProperStrand	5	chr1	72394744	72394880	protein_coding	Xrcc5	intron	ENSMUSG00000026187	ProperStrand	76	1	-16.7660
chr5	121322208	121322227	protein_coding	Oas1h	intron	ENSMUSG00000001168	ProperStrand	13	chr11	51214170	51219502	protein_coding	Col23a1	intron	ENSMUSG00000063564	NonProperStrand	66	1	-14.9470
chr17	39847248	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	mmu-miR-6238	2	22	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	2	-3.0362
chr17	39847735	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	47223806	47223865	SINE	B2_Mm1a	B2	chr19B2_Mm1a47223814	NonProperStrand	1	1	-inf
chr11	3352392	3352471	lincRNA	8430429K09Rik	intron	ENSMUSG00000034587	NonProperStrand	38	chr13	97190561	97190600	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0179
chr7	3634857	3636722	protein_coding-noncoding	Mboat7	utr3	ENSMUSG00000035596	NonProperStrand	11	chr7	3634722	3634898	protein_coding	Mboat7	intron	ENSMUSG00000035596	NonProperStrand	14	8	-20.2545
chr8	44951961	44952092	LINE	L1Md_F3	L1	chr8L1Md_F344951540	NonProperStrand	18	chr11	50232030	50232052	protein_coding	Rufy1	intron	ENSMUSG00000020375	NonProperStrand	40	2	-inf
chr17	39847346	39847368	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	132182815	132182911	SINE	B2_Mm1t	B2	chr4B2_Mm1t132182769	NonProperStrand	2	2	-inf
chr17	39846462	39846534	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	30461121	30462968	protein_coding	1700025E21Rik	intron	ENSMUSG00000029784	ProperStrand	2	1	-5.3533
chrX	103277656	103277760	protein_coding	Atp7a	intron	ENSMUSG00000033792	NonProperStrand	68	chr4	119137036	119137076	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-7.4835
chr1	135768993	135769066	SINE	B3	B2	chr1B3135768938	NonProperStrand	1	chr2	154260120	154260136	SINE	B2_Mm2	B2	chr2B2_Mm2154260021	ProperStrand	3	1	-inf
chr10	79064885	79064985	LTR	MTC	MaLR	chr10MTC79064565	NonProperStrand	1	chr10	79065011	79065101	LTR	MTE2b	MaLR	chr10MTE2b79064976	ProperStrand	1	1	-inf
chr9	120130799	120131037	LTR	ORR1E	MaLR	chr9ORR1E120130701	ProperStrand	44	chr9	120130310	120130806	SINE	B4	B4	chr9B4120130322	NonProperStrand	37	15	-inf
chr17	49739923	49740023	LTR	RMER13B	ERVK	chr17RMER13B49739852	NonProperStrand	2	chr17	49740602	49740692	SINE	B3A	B2	chr17B3A49740494	ProperStrand	2	2	-inf
chr4	28908678	28908742	LINE	Lx8	L1	chr4Lx828908396	NonProperStrand	2	chr9	123461822	123461869	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr12	24536321	24536378	LTR	RLTR10A	ERVK	chr12RLTR10A24536209	NonProperStrand	1	chr7	29275121	29275188	SINE	B4	B4	chr7B429275117	ProperStrand	1	1	-inf
chr16	32674305	32674341	protein_coding	Tnk2	intron	ENSMUSG00000022791	ProperStrand	153	chr5	143064736	143064782	protein_coding	Mmd2	intron	ENSMUSG00000039533	ProperStrand	23	1	-12.0856
chr7	116261994	116262061	LTR	MERVL-int	ERVL	chr7MERVL-int116261974	ProperStrand	64	chr6	120203433	120203479	protein_coding	B4galnt3	intron	ENSMUSG00000041372	ProperStrand	61	1	-11.8593
chr15	98950875	98950987	LTR	RMER17D2	ERVK	chr15RMER17D298950684	NonProperStrand	31	chr1	170198781	170198827	protein_coding	Pbx1	intron	ENSMUSG00000052534	ProperStrand	32	1	-14.6294
chr11	23732219	23732315	LTR	MTA_Mm	MaLR	chr11MTA_Mm23732136	ProperStrand	5	chr17	39846832	39846876	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr15	8088743	8088815	protein_coding	Nup155	intron	ENSMUSG00000022142	NonProperStrand	40	chr1	64603762	64603793	protein_coding	Creb1	intron	ENSMUSG00000025958	ProperStrand	13	1	-15.9961
chr16	37881396	37881464	protein_coding	Lrrc58	utr3	ENSMUSG00000034158	ProperStrand	33	chr10	42196746	42196814	protein_coding	Lace1	intron	ENSMUSG00000038302	ProperStrand	56	2	-20.5344
chr10	78162396	78162496	LINE	L1Md_F2	L1	chr10L1Md_F278157046	ProperStrand	2	chr8	77572599	77572689	protein_coding	Tom1	intron	ENSMUSG00000042870	ProperStrand	14	1	-19.5799
chr8	106807187	106818540	protein_coding	Cmtm1	intron	ENSMUSG00000031876	NonProperStrand	30	chr8	106818536	106850245	protein_coding	Cmtm2b	intron	ENSMUSG00000035785	ProperStrand	3	2	-21.9899
chr18	12339516	12339607	protein_coding-noncoding	3110002H16Rik	utr5	ENSMUSG00000024410	NonProperStrand	1	chr18	12339093	12339193	protein_coding	3110002H16Rik	intron	ENSMUSG00000024410	NonProperStrand	2	1	-inf
chr12	4083341	4083424	protein_coding	Dnajc27	intron	ENSMUSG00000020657	ProperStrand	19	chr9	123461977	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.1531
chr1	127402786	127402833	SINE	RSINE1	B4	chr1RSINE1127402792	NonProperStrand	1	chr11	60443401	60443496	lincRNA	Gm17423	intron	ENSMUSG00000090281	ProperStrand	17	1	-inf
chr17	39843798	39843825	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr7	30823571	30823588	protein_coding	Zfp14	exon	ENSMUSG00000053985	ProperStrand	3	1	-9.1352
chr4	34810096	34810186	protein_coding	Zfp292	intron	ENSMUSG00000039967	ProperStrand	60	chr17	30620517	30620617	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-7.2404
chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	chr7	138882540	138882657	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-8.7665
chr4	116746588	116746688	protein_coding-noncoding	Eif2b3	utr5	ENSMUSG00000028683	NonProperStrand	1	chr4	116746863	116746953	protein_coding	Eif2b3	intron	ENSMUSG00000028683	NonProperStrand	3	1	-inf
chr2	98990335	98990435	LINE	L1_Mus1	L1	chr2L1_Mus198990312	ProperStrand	1	chr2	98989805	98989895	LINE	L1_Mus4	L1	chr2L1_Mus498989719	NonProperStrand	1	1	-inf
chr5	146260993	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	123461801	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	107	-inf
chr14	19769660	19769781	LINE	L1_Mus2	L1	chr14L1_Mus219767656	ProperStrand	23	chr1	72713584	72713618	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	61	1	-13.9325
chr11	109011645	109011694	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	70599532	70599571	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-5.3276
chr4	37498544	37498561	LINE	Lx9	L1	chr4Lx937498464	NonProperStrand	1	chr2	32793752	32793853	protein_coding	Lrsam1	intron	ENSMUSG00000026792	ProperStrand	24	1	-inf
chr4	155174328	155174373	LTR	RMER4A	ERVK	chr4RMER4A155174279	ProperStrand	1	chr4	155180405	155180507	protein_coding	Mrpl20	intron	ENSMUSG00000029066	NonProperStrand	18	1	-inf
chr11	76582982	76583081	LINE	MusHAL1	L1	chr11MusHAL176582926	NonProperStrand	2	chr17	39846415	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39847611	39847830	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	38447321	38447913	protein_coding	Adprh	exon	ENSMUSG00000002844	ProperStrand	17	4	-5.4631
chr15	12038548	12038586	SINE	ID4_	ID	chr15ID4_12038517	ProperStrand	1	chr17	56603726	56604156	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	1	-inf
chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	chr17	30248644	30248769	protein_coding	Zfand3	intron	ENSMUSG00000044477	NonProperStrand	157	1	-12.0339
chr17	82635551	82635641	LTR	MLT1E2	MaLR	chr17MLT1E282635546	NonProperStrand	1	chr17	82635279	82635379	LTR	MTA_Mm	MaLR	chr17MTA_Mm82635149	NonProperStrand	1	1	-inf
chr2	138678497	138678587	LINE	L1Md_A	L1	chr2L1Md_A138677912	ProperStrand	1	chr2	138678897	138678997	LTR	ORR1A2	MaLR	chr2ORR1A2138678911	NonProperStrand	1	1	-inf
chr5	134620346	134620434	LTR	MLT1D	MaLR	chr5MLT1D134620352	ProperStrand	9	chr2	5379293	5379360	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	3	-18.9029
chr13	23739133	23739262	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int23738136	NonProperStrand	71	chr13	23739213	23739423	LTR	MTA_Mm	MaLR	chr13MTA_Mm23739238	NonProperStrand	65	17	-inf
chr5	29791042	29791132	SINE	B1_Mus2	Alu	chr5B1_Mus229790991	ProperStrand	4	chr5	29791167	29791267	SINE	B2_Mm1t	B2	chr5B2_Mm1t29791163	ProperStrand	4	4	-inf
chr12	15701853	15701874	LTR	MYSERV16_I-int	ERVK	chr12MYSERV16_I-int15700971	ProperStrand	1	chr9	29330941	29331072	protein_coding	Ntm	intron	ENSMUSG00000059974	ProperStrand	39	1	-inf
chr3	95828139	95828268	protein_coding	Vps45	intron	ENSMUSG00000015747	ProperStrand	31	chr1	152567426	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	1	-12.6572
chr12	72223524	72236565	protein_coding	Timm9	intron	ENSMUSG00000021079	ProperStrand	11	chr9	123461876	123462014	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-7.1466
chr6	128243765	128243865	protein_coding	Tead4	intron	ENSMUSG00000030353	ProperStrand	34	chr11	105754138	105754227	protein_coding	Tanc2	intron	ENSMUSG00000053580	NonProperStrand	26	1	-14.8658
chr12	71526098	71526198	LINE	Lx7	L1	chr12Lx771525984	ProperStrand	1	chr12	71526273	71526363	LINE	Lx7	L1	chr12Lx771526205	ProperStrand	1	1	-inf
chr5	146261272	146261333	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr16	36087695	36087779	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	1	-7.0052
chr6	3201474	3201501	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	135216683	135216749	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n135216554	NonProperStrand	3	1	-9.0398
chr2	22963124	22963266	protein_coding	Acbd5	intron	ENSMUSG00000026781	NonProperStrand	6	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-11.3093
chr9	110281284	110281338	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr1	59191723	59191767	protein_coding	Mpp4	intron	ENSMUSG00000079550	ProperStrand	26	1	-9.2456
chr9	20911437	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	20	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr17	33645111	33645211	LTR	MTE-int	MaLR	chr17MTE-int33645086	NonProperStrand	3	chr17	33645230	33645320	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n33645217	NonProperStrand	3	3	-inf
chr11	58326432	58326510	LINE	L1Md_F2	L1	chr11L1Md_F258324555	ProperStrand	5	chr19	47162218	47162237	protein_coding	Usmg5	intron	ENSMUSG00000071528	NonProperStrand	1	1	-inf
chr9	22321414	22321504	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	chr4	133966473	133967813	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	4	-inf
chr14	89898848	89898948	LINE	L1_Mm	L1	chr14L1_Mm89898870	NonProperStrand	1	chr4	123283234	123283323	protein_coding	Macf1	intron	ENSMUSG00000028649	ProperStrand	35	1	-inf
chr6	87909734	87909783	LTR	RLTR44-int	ERVK	chr6RLTR44-int87909628	NonProperStrand	2	chr2	59324057	59324100	protein_coding	Dapl1	intron	ENSMUSG00000026989	ProperStrand	34	1	-19.8869
chr17	56096423	56096495	lincRNA	Gm16712	intron	ENSMUSG00000084841	NonProperStrand	8	chr10	76801889	76801932	protein_coding	Adarb1	intron	ENSMUSG00000020262	ProperStrand	178	1	-13.9828
chr12	71001729	71001793	protein_coding	Atl1	intron	ENSMUSG00000021066	NonProperStrand	8	chr15	103240435	103240507	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	1	-15.9103
chr7	81151069	81151159	protein_coding	St8sia2	intron	ENSMUSG00000025789	NonProperStrand	37	chr1	180569114	180569150	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	1	-10.8731
chr3	76613437	76613527	LINE	Lx2B	L1	chr3Lx2B76612724	NonProperStrand	1	chr3	76613778	76613878	LINE	Lx4B	L1	chr3Lx4B76613554	NonProperStrand	1	1	-inf
chr6	97147970	97147999	protein_coding	Uba3	intron	ENSMUSG00000030061	ProperStrand	3	chr1	131573995	131574034	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-15.3372
chr14	57833722	57833777	LINE	L1_Mus3	L1	chr14L1_Mus357827886	NonProperStrand	3	chr19	40294289	40294334	LINE	Lx2A1	L1	chr19Lx2A140293779	ProperStrand	9	1	-21.6921
chr16	64488330	64488430	DNA	RCHARR1	MER1_type	chr16RCHARR164488165	ProperStrand	1	chr16	64488585	64488675	LTR	BGLII_A	ERVK	chr16BGLII_A64488586	ProperStrand	1	1	-inf
chr5	110299880	110302059	LINE	Lx6	L1	chr5Lx6110300517	NonProperStrand	1	chr17	39847493	39847593	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	133465629	133465692	LINE	L1Md_T	L1	chr3L1Md_T133465567	NonProperStrand	1	chr17	39845847	39845920	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr10	86068554	86068601	LINE	L1Md_T	L1	chr10L1Md_T86067509	ProperStrand	1	chr1	178330618	178330655	LTR	MER21B	ERV1	chr1MER21B178330411	NonProperStrand	14	1	-inf
chr10	41743832	41743932	LTR	RMER10B	ERVL	chr10RMER10B41743567	NonProperStrand	3	chr10	41744027	41744117	SINE	ID_B1	B4	chr10ID_B141743935	ProperStrand	1	1	-inf
chr17	39847445	39847482	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	86489069	86489113	protein_coding	Rps6kl1	intron	ENSMUSG00000019235	ProperStrand	2	1	-5.4040
chr17	39847640	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	125482812	125482858	Simple_repeat	(TTCC)n	Simple_repeat	chr6(TTCC)n125482816	NonProperStrand	1	1	-inf
chr2	33257235	33257325	SINE	PB1D10	Alu	chr2PB1D1033257211	NonProperStrand	3	chr17	78655749	78656921	protein_coding	Crim1	intron	ENSMUSG00000024074	NonProperStrand	26	3	-inf
chr17	39847566	39847607	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	37992633	37992736	Simple_repeat	(AGTAG)n	Simple_repeat	chr7(AGTAG)n37992542	NonProperStrand	1	1	-inf
chr17	39846415	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	80078602	80078666	SINE	B4A	B4	chr10B4A80078567	ProperStrand	1	1	-inf
chr1	122357176	122357227	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr5	124463467	124463557	protein_coding	Vps37b	intron	ENSMUSG00000066278	NonProperStrand	26	1	-10.5974
chr11	69757630	69757688	protein_coding	Slc2a4	exon	ENSMUSG00000018566	ProperStrand	7	chr13	44869603	44869671	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.8338
chr17	39847981	39848056	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	154650522	154650592	protein_coding	Prkcz	intron	ENSMUSG00000029053	NonProperStrand	3	2	-8.1061
chr17	39848098	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	55173281	55173335	protein_coding	Nrg4	intron	ENSMUSG00000032311	NonProperStrand	23	1	-3.1127
chr17	39842995	39843089	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	39843358	39843723	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	24	-6.3578
chr13	21193834	21193934	LTR	MMERGLN-int	ERV1	chr13MMERGLN-int21193120	ProperStrand	3	chr2	20682136	20682226	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-15.0141
chr10	70125731	70125817	LINE	L1Md_F2	L1	chr10L1Md_F270125179	ProperStrand	6	chr10	70120244	70120310	LTR	RLTR10	ERVK	chr10RLTR1070120159	ProperStrand	1	1	-inf
chr13	112486516	112486546	protein_coding	Mier3	intron	ENSMUSG00000032727	ProperStrand	63	chr8	122616509	122616618	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-6.8357
chr10	45620550	45620657	LINE	L1_Mur3	L1	chr10L1_Mur345618794	NonProperStrand	1	chr17	80641953	80641983	protein_coding	Dhx57	intron	ENSMUSG00000035051	ProperStrand	50	1	-inf
chr9	17987803	17987836	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	2	-17.5698
chr17	39846882	39846982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	36230117	36230312	SINE	RSINE1	B4	chr8RSINE136230075	ProperStrand	2	2	-inf
chr4	3876878	3876969	protein_coding-noncoding	Chchd7	utr5	ENSMUSG00000042198	NonProperStrand	1	chr16	50408367	50408387	protein_coding	Bbx	intron	ENSMUSG00000022641	ProperStrand	76	1	-inf
chr4	101532507	101532597	LINE	L1_Mus3	L1	chr4L1_Mus3101531692	ProperStrand	5	chr4	101532666	101532766	SINE	B1_Mus2	Alu	chr4B1_Mus2101532602	ProperStrand	2	2	-inf
chr14	61839908	61839998	protein_coding	Sgcg	utr3	ENSMUSG00000035296	ProperStrand	1	chr14	61839724	61839824	protein_coding	Sacs	intron	ENSMUSG00000048279	NonProperStrand	5	1	-inf
chr4	34867838	34867924	Simple_repeat	(TTCC)n	Simple_repeat	chr4(TTCC)n34867835	NonProperStrand	1	chr4	34866972	34867012	pseudogene	Gm12361	.	ENSMUSG00000083956	NonProperStrand	4	1	-inf
chr14	19278154	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr5	3766563	3766636	protein_coding	Ankib1	intron	ENSMUSG00000040351	ProperStrand	49	1	-11.9554
chr17	39847065	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	32762850	32762940	protein_coding	Fam129b	intron	ENSMUSG00000026796	NonProperStrand	3	1	-5.4882
chr8	33851726	33851760	LINE	L1Md_A	L1	chr8L1Md_A33850474	ProperStrand	25	chr4	132310305	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-11.4919
chr9	44148402	44148440	protein_coding	Hmbs	intron	ENSMUSG00000032126	ProperStrand	11	chr15	100319711	100319817	protein_coding	Csrnp2	intron	ENSMUSG00000044636	NonProperStrand	1	1	-inf
chr13	73319904	73319941	LINE	Lx8	L1	chr13Lx873319740	ProperStrand	8	chr7	126471140	126471234	LINE	Lx5	L1	chr7Lx5126467219	ProperStrand	29	1	-17.5346
chr5	114669987	114670055	protein_coding	Acacb	intron	ENSMUSG00000042010	NonProperStrand	38	chr12	81780945	81781023	protein_coding	Slc39a9	utr3	ENSMUSG00000048833	NonProperStrand	63	1	-12.8473
chr11	78023460	78023513	protein_coding	Supt6h	intron	ENSMUSG00000002052	NonProperStrand	41	chr13	54190148	54190186	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-13.1599
chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chrX	20617873	20617928	protein_coding	Zfp182	intron	ENSMUSG00000054737	NonProperStrand	10	1	-8.0770
chr2	35675930	35676049	antisense	9030204H09Rik	.	ENSMUSG00000086449	ProperStrand	84	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-9.6036
chrX	42234732	42236363	LINE	Lx9	L1	chrXLx942236249	ProperStrand	1	chrX	42233974	42234731	SINE	B4	B4	chrXB442234552	NonProperStrand	1	1	-inf
chr17	39848139	39848164	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	13574361	13574436	protein_coding	St8sia6	utr3	ENSMUSG00000003418	NonProperStrand	14	1	-4.0485
chr10	12460847	12460915	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	chr8	25161191	25161270	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-7.3667
chr2	166851273	166851981	protein_coding	Ddx27	intron	ENSMUSG00000017999	ProperStrand	17	chr2	166868917	166868980	protein_coding	Znfx1	utr5	ENSMUSG00000039501	NonProperStrand	7	1	-18.7474
chr8	33695064	33697198	LINE	Lx9	L1	chr8Lx933694815	NonProperStrand	3	chr9	123462014	123462048	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr17	39847353	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	16811600	16811673	LTR	RMER19B	ERVK	chr7RMER19B16811295	ProperStrand	2	2	-inf
chr11	12438849	12438962	LTR	MLT2B4	ERVL	chr11MLT2B412438862	NonProperStrand	3	chr18	65477872	65477904	protein_coding	Alpk2	intron	ENSMUSG00000032845	NonProperStrand	17	2	-20.2353
chr6	84843016	84843088	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	chr15	83149702	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-8.1272
chr6	6153260	6153350	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr13	96542941	96543041	protein_coding	Iqgap2	intron	ENSMUSG00000021676	NonProperStrand	66	1	-9.2449
chr2	59174481	59174548	protein_coding	Pkp4	intron	ENSMUSG00000026991	ProperStrand	97	chr13	49178329	49178371	protein_coding	Wnk2	intron	ENSMUSG00000037989	ProperStrand	19	1	-13.3906
chr6	49261163	49261222	LTR	RMER6A	ERVK	chr6RMER6A49261136	ProperStrand	5	chr16	24933461	24933499	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	1	-14.2931
chr10	12814546	12814616	protein_coding	Plagl1	intron	ENSMUSG00000019817	NonProperStrand	27	chr10	128382448	128382527	protein_coding	Itga7	intron	ENSMUSG00000025348	ProperStrand	66	1	-13.4459
chr9	123461846	123461904	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr5	20937023	20937103	protein_coding	Fam185a	intron	ENSMUSG00000047221	NonProperStrand	15	1	-3.5950
chr6	92940798	93107071	lincRNA	9530026P05Rik	intron	ENSMUSG00000087573	ProperStrand	66	chr19	5798441	5798733	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	2	-7.1174
chr2	164695798	164695874	LINE	L1_Mur3	L1	chr2L1_Mur3164695787	NonProperStrand	1	chr2	164695714	164695783	LTR	RLTR18B	ERVK	chr2RLTR18B164695438	NonProperStrand	1	1	-inf
chr13	97190549	97190577	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr19	4918048	4918066	protein_coding	Dpp3	exon	ENSMUSG00000063904	ProperStrand	50	1	-5.4777
chr16	72780413	72780513	protein_coding	Robo1	intron	ENSMUSG00000022883	ProperStrand	177	chr7	112714013	112714103	protein_coding	Apbb1	intron	ENSMUSG00000037032	NonProperStrand	51	1	-10.1794
chr1	161035399	161035450	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr4	107821419	107821460	LTR	RLTR4_MM-int	ERV1	chr4RLTR4_MM-int107819336	ProperStrand	1	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr8	119525799	119525920	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	121	1	-9.1906
chr11	109011644	109011704	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	108517443	108517513	protein_coding	Txndc12	intron	ENSMUSG00000028567	ProperStrand	7	1	-10.4933
chr17	39847338	39847380	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	75615855	75615950	lincRNA	Gm13657	intron	ENSMUSG00000086813	NonProperStrand	4	1	-3.7035
chr12	59040421	59040523	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr13	111604212	111604261	SINE	B1_Mm	Alu	chr13B1_Mm111604169	ProperStrand	1	1	-inf
chr17	39843504	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	114851974	114852052	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	4	-3.3813
chr13	83741035	83741060	protein_coding	Mef2c	intron	ENSMUSG00000005583	ProperStrand	10	chr18	75378424	75378550	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	4	-inf
chr10	23785914	23785944	LINE	L1_Mus3	L1	chr10L1_Mus323784332	ProperStrand	1	chr11	75079261	75079372	protein_coding	Rtn4rl1	exon	ENSMUSG00000045287	ProperStrand	44	1	-inf
chr19	44636273	44636363	LTR	MLT1E	MaLR	chr19MLT1E44635780	NonProperStrand	1	chr19	44636530	44636630	SINE	B2_Mm1t	B2	chr19B2_Mm1t44636443	ProperStrand	1	1	-inf
chr17	39843823	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr6	91373613	91373631	SINE	B1F	Alu	chr6B1F91373610	ProperStrand	2	1	-10.2298
chr10	81624168	81624226	LTR	ORR1A0	MaLR	chr10ORR1A081624038	ProperStrand	1	chr17	39846656	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	45406363	45406438	LTR	MurERV4-int	ERVK	chr14MurERV4-int45406242	NonProperStrand	1	chr9	123461931	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	19419387	19419443	LINE	L1VL4	L1	chr7L1VL419419160	ProperStrand	2	chr5	123530802	123530874	lincRNA	Gm17627	intron	ENSMUSG00000066418	ProperStrand	58	1	-19.1639
chr17	39847848	39847938	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	120571707	120572736	protein_coding	Stra13	intron	ENSMUSG00000025144	ProperStrand	2	1	-5.4040
chr5	33532158	33532214	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr10	69344572	69344674	protein_coding	Ank3	intron	ENSMUSG00000069601	NonProperStrand	77	3	-inf
chr17	39846462	39846527	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	66311773	66311807	LTR	ORR1A2	MaLR	chr5ORR1A266311756	ProperStrand	1	1	-inf
chr4	123614134	123614199	protein_coding	Rragc	utr3	ENSMUSG00000028646	NonProperStrand	41	chrX	159377536	159378579	protein_coding	Ctps2	intron	ENSMUSG00000031360	ProperStrand	26	1	-14.4921
chr17	39846464	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	96176432	96176774	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	8	2	-4.2675
chr14	30626810	30626900	Other	RMER1A	Other	chr14RMER1A30626682	NonProperStrand	1	chr14	30626537	30626637	SINE	RSINE1	B4	chr14RSINE130626484	NonProperStrand	1	1	-inf
chr15	64285141	64285231	LINE	L1Md_A	L1	chr15L1Md_A64281152	NonProperStrand	5	chr12	79438145	79438245	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	2	-19.3518
chr2	73012893	73012913	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr10	82776494	82776574	protein_coding	Slc41a2	intron	ENSMUSG00000034591	NonProperStrand	10	1	-15.2175
chr15	28019511	28019586	LINE	L1MC4	L1	chr15L1MC428019450	ProperStrand	1	chr15	100592477	100592498	protein_coding	Slc4a8	intron	ENSMUSG00000023032	NonProperStrand	14	1	-inf
chr14	65125741	65136357	LTR	MERVL-int	ERVL	chr14MERVL-int65124121	NonProperStrand	3	chr14	65136379	65136469	SINE	ID_B1	B4	chr14ID_B165136359	NonProperStrand	1	1	-inf
chr13	114069814	114069904	LTR	IAPEz-int	ERVK	chr13IAPEz-int114063503	ProperStrand	37	chr13	114069915	114070015	LTR	IAPLTR1a_Mm	ERVK	chr13IAPLTR1a_Mm114069937	ProperStrand	2	1	-21.1015
chr17	39846818	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	136227080	136227201	protein_coding	Ppfia4	intron	ENSMUSG00000026458	ProperStrand	22	5	-5.8021
chr4	11570630	11570701	LINE	L1VL4	L1	chr4L1VL411567004	ProperStrand	3	chr5	31068748	31068782	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	1	-16.1194
chr13	23555180	23555279	protein_coding	Btn1a1	intron	ENSMUSG00000000706	NonProperStrand	212	chr3	9504486	9504528	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-4.0515
chr1	36071703	36071793	LTR	ORR1B1	MaLR	chr1ORR1B136071662	ProperStrand	12	chr1	36071801	36071901	LTR	RLTR24	ERV1	chr1RLTR2436071817	ProperStrand	5	4	-inf
chr3	79550218	79550246	LTR	RMER5	ERV1	chr3RMER579549804	ProperStrand	1	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr19	5834500	5834547	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	chr9	118674951	118675008	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.4401
chr7	24850318	24850358	LINE	Lx2B	L1	chr7Lx2B24850086	NonProperStrand	1	chr17	39846655	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	103118189	103118256	protein_coding	Map3k14	intron	ENSMUSG00000020941	NonProperStrand	62	chr2	126627688	126627721	protein_coding	Trpm7	intron	ENSMUSG00000027365	ProperStrand	25	1	-13.7335
chr10	10857069	10857169	LINE	L1VL4	L1	chr10L1VL410856956	NonProperStrand	1	chr10	10856865	10856955	LINE	L1_Mus1	L1	chr10L1_Mus110855518	ProperStrand	1	1	-inf
chr1	151664000	151664048	SINE	MIR	MIR	chr1MIR151663906	ProperStrand	1	chr18	77117867	77117973	protein_coding	Skor2	intron	ENSMUSG00000091519	ProperStrand	55	1	-inf
chr4	24902969	24903016	processed_transcript	Gm11906	.	ENSMUSG00000085885	ProperStrand	15	chr11	6091504	6091571	protein_coding	Nudcd3	intron	ENSMUSG00000053838	ProperStrand	33	1	-16.0760
chr16	18964310	18964405	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	chr7	64507557	64507582	protein_coding	Gabrg3	intron	ENSMUSG00000055026	NonProperStrand	33	1	-12.0122
chr15	35937183	35937271	LINE	L1MCa	L1	chr15L1MCa35937112	NonProperStrand	3	chr11	73254818	73254834	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int73252549	NonProperStrand	1	1	-inf
chr17	36977187	36977321	protein_coding	Trim26	intron	ENSMUSG00000024457	NonProperStrand	28	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.1650
chr17	66119070	66119088	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	chr18	84981323	84981405	protein_coding	Gm17266	intron	ENSMUSG00000092153	NonProperStrand	19	1	-14.0191
chr10	46976739	46976839	LTR	ORR1B2-int	MaLR	chr10ORR1B2-int46976276	ProperStrand	1	chr10	46976858	46976948	LTR	ORR1B2	MaLR	chr10ORR1B246976869	ProperStrand	1	1	-inf
chr6	3201504	3201540	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	107187633	107187659	protein_coding	Glis1	intron	ENSMUSG00000034762	ProperStrand	30	1	-4.1758
chr10	39654013	39654079	LINE	Lx2	L1	chr10Lx239653828	NonProperStrand	2	chr13	8974276	8974962	protein_coding	Gtpbp4	intron	ENSMUSG00000021149	ProperStrand	25	1	-inf
chr9	106176640	106176715	SINE	ID_B1	B4	chr9ID_B1106176620	ProperStrand	2	chr15	89111208	89111273	protein_coding	Ppp6r2	exon	ENSMUSG00000036561	NonProperStrand	43	1	-20.6040
chr5	51508870	51508970	LINE	L1Md_F2	L1	chr5L1Md_F251508714	NonProperStrand	1	chr5	51111805	51111895	LINE	Lx3C	L1	chr5Lx3C51111015	ProperStrand	1	1	-inf
chr7	103550414	103550514	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	chr6	63896058	63896148	protein_coding	Grid2	intron	ENSMUSG00000071424	NonProperStrand	44	1	-12.6492
chr1	158437785	158437875	LTR	MLT1J-int	MaLR	chr1MLT1J-int158437801	ProperStrand	1	chr1	158437997	158438097	LTR	RMER15	ERVL	chr1RMER15158437947	NonProperStrand	1	1	-inf
chr2	114156335	114158888	LINE	L2	L2	chr2L2114156740	NonProperStrand	5	chrX	152038726	152038816	protein_coding	Ptchd1	intron	ENSMUSG00000041552	NonProperStrand	20	5	-inf
chr14	33967534	33967634	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	chr12	21220019	21220109	protein_coding	Asap2	intron	ENSMUSG00000052632	NonProperStrand	7	1	-15.2351
chr9	40804772	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr11	20611310	20611343	protein_coding	Aftph	intron	ENSMUSG00000049659	NonProperStrand	43	1	-8.1059
chr14	57593391	57593443	LTR	ORR1B1-int	MaLR	chr14ORR1B1-int57592315	ProperStrand	1	chr1	157412876	157412938	protein_coding	Acbd6	intron	ENSMUSG00000033701	ProperStrand	22	1	-inf
chr4	145829458	145830094	LTR	RLTR6-int	ERV1	chr4RLTR6-int145825958	NonProperStrand	2	chr4	146467586	146468678	lincRNA	Gm16889	intron	ENSMUSG00000084976	ProperStrand	8	2	-inf
chr6	3201472	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chrX	4136307	4136359	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	2	-6.1061
chr8	73164060	73164079	SINE	ID_B1	B4	chr8ID_B173163954	ProperStrand	2	chr1	153241997	153242659	protein_coding	1200016B10Rik	intron	ENSMUSG00000052748	ProperStrand	80	1	-18.9494
chr16	96417400	96417500	LINE	Lx8	L1	chr16Lx896417328	NonProperStrand	1	chr16	96428354	96428444	protein_coding	Sh3bgr	intron	ENSMUSG00000040666	ProperStrand	1	1	-inf
chrX	93405164	93405226	LINE	Lx2	L1	chrXLx293404754	ProperStrand	1	chr11	4077051	4077093	protein_coding	Sf3a1	intron	ENSMUSG00000002129	ProperStrand	1	1	-inf
chr15	59064588	59064683	LTR	RLTR25B	ERVK	chr15RLTR25B59064528	ProperStrand	1	chr15	59064681	59064718	LTR	RLTR27	ERVK	chr15RLTR2759064665	ProperStrand	1	1	-inf
chr17	39846560	39846814	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	88718299	88718315	processed_transcript	4930556N13Rik	.	ENSMUSG00000092399	ProperStrand	4	2	-6.6967
chr10	30811151	30811215	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr1	71613804	71613858	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	1	-14.5943
chr17	39846583	39846713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	101266558	101266577	protein_coding	Krt83	intron	ENSMUSG00000047641	ProperStrand	1	1	-inf
chr12	8523683	8523773	LINE	L2c	L2	chr12L2c8523646	NonProperStrand	2	chr12	8523832	8523932	LINE	L2c	L2	chr12L2c8523821	NonProperStrand	2	2	-inf
chr15	64980656	64980756	LINE	L1_Mm	L1	chr15L1_Mm64980612	ProperStrand	1	chr15	64980277	64980367	LTR	ORR1C2	MaLR	chr15ORR1C264980124	ProperStrand	1	1	-inf
chr7	140748976	140749076	SINE	B1_Mur4	Alu	chr7B1_Mur4140748974	ProperStrand	1	chr7	140748649	140748739	SINE	B4	B4	chr7B4140748555	ProperStrand	1	1	-inf
chr15	12900255	12900377	LINE	L1Md_F2	L1	chr15L1Md_F212900159	ProperStrand	1	chr15	12900523	12900559	LINE	L1_Mus4	L1	chr15L1_Mus412900441	ProperStrand	2	1	-inf
chr7	142376928	142377110	Simple_repeat	(TCTCCC)n	Simple_repeat	chr7(TCTCCC)n142377033	NonProperStrand	10	chr11	76839995	76840023	protein_coding	Slc6a4	intron	ENSMUSG00000020838	NonProperStrand	8	1	-19.7993
chr3	86004980	86005070	LTR	ORR1D1-int	MaLR	chr3ORR1D1-int86004549	NonProperStrand	2	chr9	123461967	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr16	32993950	32994005	protein_coding	Lrch3	intron	ENSMUSG00000022801	ProperStrand	84	chr6	105700599	105700677	protein_coding	Cntn4	intron	ENSMUSG00000064293	ProperStrand	13	1	-14.4694
chr7	66038981	66039029	protein_coding	Atp10a	intron	ENSMUSG00000025324	ProperStrand	84	chr15	76429182	76429796	protein_coding	Cpsf1	intron	ENSMUSG00000034022	NonProperStrand	14	1	-14.3097
chr5	134238824	134240274	LTR	MLT2B3	ERVL	chr5MLT2B3134238803	ProperStrand	3	chr5	134240265	134242623	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n134240865	NonProperStrand	2	2	-inf
chr5	139313597	139313666	Simple_repeat	(TATG)n	Simple_repeat	chr5(TATG)n139313359	NonProperStrand	1	chr12	78350925	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr4	21860907	21860964	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	ProperStrand	29	chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.9107
chr11	65074423	65074495	protein_coding	Myocd	intron	ENSMUSG00000020542	ProperStrand	122	chr1	153219046	153219128	protein_coding	1200016B10Rik	intron	ENSMUSG00000052748	ProperStrand	80	1	-10.0192
chr17	39846851	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	125420912	125421022	protein_coding	Cd9	intron	ENSMUSG00000030342	ProperStrand	2	1	-5.3533
chr17	39846462	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	93091517	93091534	protein_coding	Msh3	intron	ENSMUSG00000014850	ProperStrand	2	1	-5.3533
chr6	26940754	26940844	LINE	L1Md_A	L1	chr6L1Md_A26938421	NonProperStrand	1	chr6	27492079	27492179	protein_coding	Grm8	intron	ENSMUSG00000024211	NonProperStrand	26	1	-inf
chr19	32796233	32796281	SINE	B1_Mus1	Alu	chr19B1_Mus132796232	ProperStrand	2	chr19	32796417	32796484	Simple_repeat	(GAA)n	Simple_repeat	chr19(GAA)n32796308	ProperStrand	2	2	-inf
chr11	112037962	112038062	LTR	MLT1J	MaLR	chr11MLT1J112037666	NonProperStrand	1	chr11	112038281	112038371	SINE	RSINE1	B4	chr11RSINE1112038301	ProperStrand	1	1	-inf
chr9	47687631	47687739	SINE	B3	B2	chr9B347687584	ProperStrand	3	chr5	34195731	34195747	protein_coding	Whsc1	intron	ENSMUSG00000057406	ProperStrand	3	1	-20.2168
chr4	149001238	149001338	protein_coding-noncoding	Clstn1	utr5	ENSMUSG00000039953	NonProperStrand	5	chr4	149001373	149001464	protein_coding	Clstn1	exon	ENSMUSG00000039953	NonProperStrand	81	5	-inf
chrX	160557714	160557798	LINE	L1MA6	L1	chrXL1MA6160557610	NonProperStrand	3	chrX	160576672	160576707	LINE	L1Md_F2	L1	chrXL1Md_F2160576591	NonProperStrand	5	1	-inf
chr2	163482642	163482742	LINE	Lx5	L1	chr2Lx5163482416	ProperStrand	1	chr2	163482818	163482908	SINE	B3	B2	chr2B3163482745	ProperStrand	1	1	-inf
chr13	46763379	46763434	SINE	B1_Mur4	Alu	chr13B1_Mur446763392	NonProperStrand	2	chr13	46749655	46749700	SINE	RSINE1	B4	chr13RSINE146749580	NonProperStrand	3	2	-inf
chr17	39847214	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	106338674	106338693	protein_coding	Ttc4	intron	ENSMUSG00000025413	ProperStrand	2	1	-6.5615
chr7	127689684	127689784	LINE	L1Md_F2	L1	chr7L1Md_F2127689634	NonProperStrand	1	chr7	127689500	127689590	SINE	B4A	B4	chr7B4A127689357	ProperStrand	1	1	-inf
chr2	147058519	147058583	lincRNA	Nkx2-2as	intron	ENSMUSG00000086509	ProperStrand	37	chr13	97190549	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0707
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	110057195	110057211	protein_coding	Abca6	intron	ENSMUSG00000044749	ProperStrand	4	1	-10.0813
chr14	68048632	68048732	processed_transcript	Gm10860	.	ENSMUSG00000093634	NonProperStrand	3	chr14	68048393	68048483	protein_coding	Ebf2	utr3	ENSMUSG00000022053	ProperStrand	8	1	-20.8155
chr9	123461957	123461980	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	134786285	134786364	protein_coding	Crebl2	intron	ENSMUSG00000032652	NonProperStrand	8	1	-4.8360
chr17	39845453	39845553	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr6	38049443	38049533	protein_coding	Atp6v0a4	intron	ENSMUSG00000038600	ProperStrand	24	1	-3.8866
chr6	91098671	91101336	LTR	ORR1A2	MaLR	chr6ORR1A291101065	ProperStrand	10	chr6	91101358	91116666	protein_coding	Hdac11	intron	ENSMUSG00000034245	NonProperStrand	9	2	-inf
chr11	8433996	8434020	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr8	14600219	14600253	protein_coding	Dlgap2	intron	ENSMUSG00000047495	ProperStrand	39	1	-8.8097
chr1	169924127	169924226	LINE	L1Md_F2	L1	chr1L1Md_F2169922572	NonProperStrand	1	chr1	169924297	169924387	LINE	L1Md_F2	L1	chr1L1Md_F2169924151	NonProperStrand	1	1	-inf
chr18	35375258	35375377	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	chr18	35374282	35374314	protein_coding	Lrrtm2	utr5	ENSMUSG00000071862	ProperStrand	7	1	-15.0855
chr19	23090987	23091048	LINE	Lx9	L1	chr19Lx923090907	NonProperStrand	2	chr13	119464573	119464615	protein_coding	Fgf10	intron	ENSMUSG00000021732	ProperStrand	18	1	-21.0482
chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr15	79530155	79537021	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	NonProperStrand	156	2	-4.7669
chr14	103154820	103154885	LINE	Lx9	L1	chr14Lx9103154674	NonProperStrand	1	chrX	20676018	20678216	LINE	L1VL2	L1	chrXL1VL220675726	NonProperStrand	5	1	-inf
chr17	70963742	70963777	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	154897146	154897519	protein_coding	Gnb1	intron	ENSMUSG00000029064	NonProperStrand	2	1	-13.6443
chr15	34261125	34261231	protein_coding	Matn2	intron	ENSMUSG00000022324	ProperStrand	45	chr1	63051856	63051887	protein_coding	Ino80d	intron	ENSMUSG00000040865	ProperStrand	58	1	-12.6719
chr11	73014740	73014757	protein_coding	Shpk	intron	ENSMUSG00000005951	ProperStrand	22	chr11	87456098	87456205	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-10.5666
chr4	125498701	125498756	SINE	B4A	B4	chr4B4A125498688	NonProperStrand	1	chr4	125498493	125498592	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n125498394	ProperStrand	1	1	-inf
chr4	155333399	155333453	protein_coding	Ube2j2	utr3	ENSMUSG00000023286	NonProperStrand	17	chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr15	82197647	82197747	LTR	MMVL30-int	ERV1	chr15MMVL30-int82194861	ProperStrand	22	chr15	82177551	82178770	protein_coding	1500032L24Rik	intron	ENSMUSG00000022452	ProperStrand	8	2	-inf
chrX	150647968	150648019	LINE	L1_Mus3	L1	chrXL1_Mus3150647405	NonProperStrand	47	chrX	150647329	150647432	LTR	MTA_Mm	MaLR	chrXMTA_Mm150647027	NonProperStrand	12	1	-15.7958
chr4	43968595	43970503	SINE	B2_Mm2	B2	chr4B2_Mm243968492	NonProperStrand	1	chr4	43970544	43977470	protein_coding	Glipr2	utr5	ENSMUSG00000028480	ProperStrand	11	1	-inf
chr17	39847442	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	86769988	86806567	protein_coding	Ypel2	intron	ENSMUSG00000018427	ProperStrand	11	3	-5.3922
chr9	40803582	40803668	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-3.4114
chrX	136214555	136214934	LINE	Lx3C	L1	chrXLx3C136214720	ProperStrand	1	chr12	105186149	105186198	protein_coding	Serpina1e	intron	ENSMUSG00000072849	ProperStrand	1	1	-inf
chr8	83918287	83918382	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr9	105819462	105819498	protein_coding	Col6a5	intron	ENSMUSG00000091345	ProperStrand	15	1	-9.3134
chr2	168601390	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	chr15	78915912	78915930	protein_coding	Eif3l	intron	ENSMUSG00000033047	NonProperStrand	2	1	-20.7615
chr4	45112694	45112784	SINE	PB1D7	Alu	chr4PB1D745112697	ProperStrand	1	chr4	44882852	44882952	protein_coding	Zcchc7	intron	ENSMUSG00000035649	NonProperStrand	6	1	-inf
chr12	11091994	11092011	LINE	Lx8	L1	chr12Lx811091971	ProperStrand	5	chr5	148315309	148315325	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-16.6700
chr10	75063649	75063746	protein_coding	Ggt5	intron	ENSMUSG00000006344	ProperStrand	42	chr16	11218895	11218912	protein_coding	Gspt1	utr3	ENSMUSG00000062203	ProperStrand	60	1	-12.7435
chr11	93887036	93887103	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	chr19	23911516	23911573	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	1	-9.3794
chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	31453611	31453718	protein_coding	Fubp3	intron	ENSMUSG00000026843	NonProperStrand	5	1	-3.1907
chr17	39848099	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	17529803	17529856	lincRNA	Gm16957	intron	ENSMUSG00000087696	ProperStrand	9	1	-4.9272
chr2	5229808	5229884	protein_coding	Camk1d	intron	ENSMUSG00000039145	NonProperStrand	14	chr11	20615583	20615655	protein_coding	Aftph	intron	ENSMUSG00000049659	NonProperStrand	43	1	-15.6614
chr7	68097629	68097729	LINE	L1Md_A	L1	chr7L1Md_A68096398	ProperStrand	16	chr2	37527013	37527103	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	2	-20.7653
chr17	39843535	39843577	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	99653716	99653775	protein_coding	Pgm2	intron	ENSMUSG00000025791	NonProperStrand	16	1	-5.0382
chr14	47317791	47317864	LTR	MTC	MaLR	chr14MTC47317649	NonProperStrand	2	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-14.0145
chr2	5379282	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr16	17261754	17261776	protein_coding	Hic2	utr3	ENSMUSG00000050240	ProperStrand	111	1	-3.3959
chr13	44741516	44741633	LTR	ORR1B1	MaLR	chr13ORR1B144741363	NonProperStrand	6	chr17	39847107	39847123	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.9545
chr17	39847101	39847137	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	4764474	4764495	SINE	RSINE1	B4	chr11RSINE14764326	NonProperStrand	1	1	-inf
chr1	107055977	107056077	LTR	MLT1F2	MaLR	chr1MLT1F2107055946	ProperStrand	1	chr1	107055614	107055704	LTR	MTD	MaLR	chr1MTD107055282	NonProperStrand	1	1	-inf
chr5	146261044	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	1	1	-inf
chr17	83458918	83458959	SINE	B3A	B2	chr17B3A83458868	ProperStrand	1	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-inf
chr4	101353644	101353720	LINE	L1Md_F2	L1	chr4L1Md_F2101352950	NonProperStrand	2	chr11	98028462	98029456	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	1	-17.9152
chr14	50815267	50815331	LINE	L1_Mus3	L1	chr14L1_Mus350814316	NonProperStrand	1	chr6	3201517	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr11	76539812	76539887	SINE	B3	B2	chr11B376539802	ProperStrand	1	chr2	130707927	130707990	processed_transcript	A730017L22Rik	.	ENSMUSG00000085566	ProperStrand	13	1	-inf
chr11	121274654	121274680	SINE	B1_Mur3	Alu	chr11B1_Mur3121274596	NonProperStrand	1	chr13	97190576	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr3	26321222	26321241	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr17	39847188	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	4	-6.7622
chr1	33952374	33952462	protein_coding	Bend6	intron	ENSMUSG00000042182	NonProperStrand	30	chr7	51994437	51994455	protein_coding	Zfp473	intron	ENSMUSG00000048012	NonProperStrand	2	1	-22.0647
chrX	87238364	87238404	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr14	18270002	18270339	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	56	1	-9.6212
chr10	61274966	61275066	LINE	L1MEc	L1	chr10L1MEc61274779	ProperStrand	1	chr10	61275157	61275247	LINE	L1MEc	L1	chr10L1MEc61275181	ProperStrand	1	1	-inf
chr1	155915254	155915344	Low_complexity	CT-rich	Low_complexity	chr1CT-rich155915208	NonProperStrand	2	chr1	155915552	155922314	SINE	B1F1	Alu	chr1B1F1155915559	ProperStrand	2	2	-inf
chr9	72749254	72749309	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	chr16	89487934	89487951	protein_coding	Krtap8-1	utr3	ENSMUSG00000059632	ProperStrand	2	2	-inf
chr11	70459495	70459595	protein_coding-noncoding	Slc25a11	utr3	ENSMUSG00000014606	ProperStrand	1	chr11	70459589	70459679	protein_coding	Slc25a11	exon	ENSMUSG00000014606	ProperStrand	1	1	-inf
chr10	19858146	19858236	protein_coding-noncoding	Map3k5	utr5	ENSMUSG00000071369	NonProperStrand	2	chr10	19858047	19858147	protein_coding	Map3k5	intron	ENSMUSG00000071369	NonProperStrand	6	2	-inf
chr14	45479146	45479244	lincRNA	Gm16976	intron	ENSMUSG00000085500	NonProperStrand	62	chr14	45477274	45477315	protein_coding	Ptgdr	intron	ENSMUSG00000071489	ProperStrand	4	2	-inf
chr17	47167588	47167690	LTR	RLTR15	ERVK	chr17RLTR1547167575	ProperStrand	1	chr17	47167901	47167991	LTR	RLTR15	ERVK	chr17RLTR1547167866	NonProperStrand	1	1	-inf
chr15	84844222	84844322	SINE	B1_Mus1	Alu	chr15B1_Mus184844163	NonProperStrand	1	chr15	84844362	84844452	SINE	RSINE1	B4	chr15RSINE184844360	ProperStrand	1	1	-inf
chr5	37035264	37035319	protein_coding	D5Ertd579e	intron	ENSMUSG00000029190	NonProperStrand	43	chr7	103550498	103550567	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-13.1047
chr9	119304854	119304893	SINE	RSINE1	B4	chr9RSINE1119304773	NonProperStrand	1	chr9	119294473	119294508	protein_coding	Xylb	intron	ENSMUSG00000035769	NonProperStrand	58	1	-inf
chr17	52007459	52007549	LTR	IAPEz-int	ERVK	chr17IAPEz-int52004115	ProperStrand	1	chr17	23696850	23696950	protein_coding	Zfp213	intron	ENSMUSG00000071256	ProperStrand	1	1	-inf
chr2	98666276	98666369	Low_complexity	GA-rich	Low_complexity	chr2GA-rich98666191	ProperStrand	2	chr6	103649179	103649288	protein_coding	Chl1	intron	ENSMUSG00000030077	ProperStrand	8	2	-inf
chr14	23777261	23777390	protein_coding	1700112E06Rik	intron	ENSMUSG00000063458	NonProperStrand	60	chr2	118833954	118833977	pseudogene	Gm14088	.	ENSMUSG00000081413	ProperStrand	2	1	-19.2869
chr7	144939836	144939870	LINE	L1MEg	L1	chr7L1MEg144939703	NonProperStrand	1	chr9	59673204	59673265	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr11	69741055	69741093	DNA	Charlie12	MER1_type	chr11Charlie1269740958	ProperStrand	2	chr13	97190552	97190580	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr1	187349387	187349457	LINE	L1PB4	L1	chr1L1PB4187349230	NonProperStrand	1	chr17	39847659	39847739	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	51392297	51392350	LINE	L1M2	L1	chrXL1M251392307	ProperStrand	1	chrX	51409347	51409426	LTR	IAPEz-int	ERVK	chrXIAPEz-int51409152	ProperStrand	1	1	-inf
chr11	32183882	32183972	protein_coding-noncoding	Hba-a1	utr5	ENSMUSG00000069919	ProperStrand	1	chr11	32184010	32184110	protein_coding	Hba-a1	exon	ENSMUSG00000069919	ProperStrand	1	1	-inf
chr2	59231606	59231673	LTR	ORR1D2	MaLR	chr2ORR1D259231452	ProperStrand	2	chr6	3201509	3201566	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr1	4782703	4783952	LTR	RMER16-int	ERVK	chr1RMER16-int4781013	ProperStrand	5	chr4	130366724	130366762	protein_coding	Sdc3	intron	ENSMUSG00000025743	ProperStrand	14	1	-20.0849
chr17	39846759	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	23820661	23820697	LTR	RMER17A2	ERVK	chr5RMER17A223820305	NonProperStrand	2	1	-5.3533
chr9	45378863	45378938	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	chr6	113317073	113317158	protein_coding	Tada3	exon	ENSMUSG00000048930	NonProperStrand	28	1	-11.4384
chr19	41919977	41920105	SINE	B1F2	Alu	chr19B1F241919996	ProperStrand	2	chr9	123461972	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr17	39846418	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	151977892	151977957	SINE	ID4_	ID	chr2ID4_151977898	NonProperStrand	1	1	-inf
chr9	94333628	94333718	LTR	MTD	MaLR	chr9MTD94333577	ProperStrand	1	chr9	94333791	94333891	LTR	MTD	MaLR	chr9MTD94333809	ProperStrand	1	1	-inf
chr17	39847160	39847212	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	8255034	8255050	protein_coding	Gm10302	intron	ENSMUSG00000070848	NonProperStrand	2	1	-6.5615
chr5	139274777	139274793	protein_coding	Fam20c	intron	ENSMUSG00000025854	NonProperStrand	41	chr10	58498652	58498767	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-10.8854
chr4	125845329	125845419	protein_coding-noncoding	Thrap3	utr3	ENSMUSG00000043962	NonProperStrand	1	chr4	125845759	125845859	protein_coding	Thrap3	intron	ENSMUSG00000043962	NonProperStrand	1	1	-inf
chr6	22798486	22798576	LINE	Lx	L1	chr6Lx22798346	NonProperStrand	1	chr6	22798717	22798817	LTR	MTA_Mm	MaLR	chr6MTA_Mm22798581	NonProperStrand	1	1	-inf
chr6	120325085	120325210	protein_coding	Kdm5a	intron	ENSMUSG00000030180	NonProperStrand	22	chr9	110281305	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.5855
chr5	76184517	76184610	LTR	LTR85c	Gypsy?	chr5LTR85c76184472	ProperStrand	3	chr5	76184705	76184735	LTR	LTR85c	Gypsy?	chr5LTR85c76184577	ProperStrand	1	1	-inf
chrX	112143146	112143246	LINE	Lx6	L1	chrXLx6112142456	ProperStrand	1	chrX	112143278	112143368	LTR	MTC-int	MaLR	chrXMTC-int112143275	NonProperStrand	1	1	-inf
chr5	23906057	23906157	protein_coding-noncoding	Abcb8	utr5	ENSMUSG00000028973	ProperStrand	1	chr5	23905821	23905911	protein_coding	Abcb8	exon	ENSMUSG00000028973	ProperStrand	1	1	-inf
chr2	22744845	22744910	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr13	97479862	97479917	LTR	MTA_Mm	MaLR	chr13MTA_Mm97479720	ProperStrand	2	1	-14.2535
chrX	8144667	8145032	LINE	L1Md_F2	L1	chrXL1Md_F28144136	ProperStrand	10	chrX	8143856	8144581	LINE	L1_Mm	L1	chrXL1_Mm8143798	NonProperStrand	4	1	-inf
chr9	123461823	123461864	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr6	30009894	30009913	protein_coding	Nrf1	intron	ENSMUSG00000058440	NonProperStrand	5	1	-5.8308
chr3	139475595	139475685	LTR	MT2_Mm	ERVL	chr3MT2_Mm139475501	ProperStrand	1	chr3	139475306	139475406	Low_complexity	GA-rich	Low_complexity	chr3GA-rich139475289	NonProperStrand	1	1	-inf
chr14	30810336	30810354	protein_coding	Il17rb	exon	ENSMUSG00000015966	ProperStrand	4	chr15	101194906	101194948	protein_coding	Krt80	intron	ENSMUSG00000037185	NonProperStrand	51	1	-18.2500
chr11	119784950	119785043	LINE	L1M4	L1	chr11L1M4119784924	NonProperStrand	1	chr11	119790856	119790897	SINE	B3A	B2	chr11B3A119790793	NonProperStrand	2	1	-inf
chr5	33515053	33515134	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr6	67080172	67080216	lincRNA	A430010J10Rik	intron	ENSMUSG00000091724	ProperStrand	3	1	-15.5095
chr5	33534967	33535088	LINE	L1MC	L1	chr5L1MC33534856	NonProperStrand	15	chr2	5379309	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.2965
chr4	63464268	63464365	LINE	L1Md_T	L1	chr4L1Md_T63463913	NonProperStrand	1	chr3	129556344	129556394	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-inf
chr2	23579445	23579535	LINE	L1_Mur3	L1	chr2L1_Mur323579438	ProperStrand	2	chr2	23579343	23579443	LINE	Lx6	L1	chr2Lx623578954	ProperStrand	2	2	-inf
chr4	91277450	91277540	LINE	L1Md_F3	L1	chr4L1Md_F391276644	ProperStrand	1	chr4	91277690	91277790	LINE	Lx3C	L1	chr4Lx3C91277627	ProperStrand	1	1	-inf
chr1	16616739	16616839	SINE	B1_Mus1	Alu	chr1B1_Mus116616708	ProperStrand	1	chr1	16616892	16616982	SINE	ID2	ID	chr1ID216616887	NonProperStrand	1	1	-inf
chr17	39846410	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	55091080	55091152	LTR	ORR1B1	MaLR	chr1ORR1B155090732	ProperStrand	2	1	-5.3533
chr9	87956877	87956967	LINE	Lx8	L1	chr9Lx887956571	ProperStrand	1	chr9	87956286	87956386	LTR	ORR1D2	MaLR	chr9ORR1D287956232	NonProperStrand	1	1	-inf
chr19	41990650	41990750	protein_coding	Pgam1	intron	ENSMUSG00000011752	ProperStrand	16	chr1	33627733	33627823	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	1	-12.9950
chr12	24842059	24842124	LTR	RLTR10C	ERVK	chr12RLTR10C24841997	ProperStrand	1	chr17	39847611	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	141631710	141631844	DNA	Charlie1a	MER1_type	chr7Charlie1a141631351	ProperStrand	11	chr15	54886923	54886944	protein_coding	Taf2	intron	ENSMUSG00000037343	ProperStrand	2	1	-20.5081
chr10	128804960	128805026	LTR	MMETn-int	ERVK	chr10MMETn-int128803443	ProperStrand	8	chr17	39847324	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr13	119316290	119316380	LINE	L1Md_A	L1	chr13L1Md_A119311150	ProperStrand	1	chr13	119316658	119316758	LINE	L1Md_A	L1	chr13L1Md_A119316571	ProperStrand	1	1	-inf
chr17	26930792	26930840	DNA	Tigger7	MER2_type	chr17Tigger726930762	NonProperStrand	1	chr17	26931194	26931272	Simple_repeat	(CA)n	Simple_repeat	chr17(CA)n26931038	ProperStrand	1	1	-inf
chr10	122074707	122074757	LINE	L1Md_A	L1	chr10L1Md_A122074226	NonProperStrand	10	chr8	48273113	48273173	protein_coding	Stox2	intron	ENSMUSG00000038143	ProperStrand	98	2	-inf
chr7	79741853	79741943	LTR	MTEb	MaLR	chr7MTEb79741778	NonProperStrand	1	chr7	79741684	79741784	LTR	ORR1C1	MaLR	chr7ORR1C179741356	NonProperStrand	1	1	-inf
chr1	36080083	36080128	LINE	L1MA7	L1	chr1L1MA736080070	ProperStrand	4	chr5	50075693	50075711	LTR	MLT1A0	MaLR	chr5MLT1A050075569	ProperStrand	1	1	-inf
chr3	74489771	74489861	LINE	Lx6	L1	chr3Lx674489001	ProperStrand	1	chr3	74489948	74490048	LTR	MTC	MaLR	chr3MTC74489907	ProperStrand	1	1	-inf
chr17	39847659	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	76151964	76155452	protein_coding	Rfesd	utr5	ENSMUSG00000043190	NonProperStrand	4	1	-3.7035
chr9	97020451	97020551	LTR	MERVL_2A-int	ERVL	chr9MERVL_2A-int97020422	NonProperStrand	1	chr9	97020322	97020412	LTR	MTE-int	MaLR	chr9MTE-int97020348	NonProperStrand	1	1	-inf
chr8	104061920	104061949	LINE	Lx7	L1	chr8Lx7104061622	NonProperStrand	1	chr10	119548566	119548646	protein_coding	Helb	intron	ENSMUSG00000020228	NonProperStrand	12	1	-inf
chr17	39845554	39845646	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr12	110458140	110458189	LTR	MYSERV6-int	ERVK	chr12MYSERV6-int110457874	NonProperStrand	2	1	-9.3724
chr13	109389982	109390015	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr18	77492286	77492329	protein_coding	St8sia5	intron	ENSMUSG00000025425	NonProperStrand	23	1	-9.9144
chr11	109011648	109011863	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	146261033	146261224	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	7	-5.9551
chr10	81398568	81398620	LTR	RLTR19-int	ERVK	chr10RLTR19-int81398458	ProperStrand	1	chr17	39847658	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	61330224	61330243	protein_coding	Fam190a	intron	ENSMUSG00000039578	NonProperStrand	37	chr5	34420077	34420109	protein_coding	Poln	intron	ENSMUSG00000045102	NonProperStrand	133	1	-11.3999
chr5	30783918	30783936	protein_coding	1700001C02Rik	intron	ENSMUSG00000029182	NonProperStrand	1	chr17	68778823	68778840	protein_coding	L3mbtl4	intron	ENSMUSG00000041565	ProperStrand	11	1	-inf
chr16	4661069	4661142	protein_coding-noncoding	Coro7	utr3	ENSMUSG00000039637	ProperStrand	1	chr9	123461935	123461984	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	66120447	66120470	SINE	B3A	B2	chr9B3A66120442	NonProperStrand	2	chr8	117408501	117408593	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-13.5579
chr8	88227643	88227699	SINE	B1_Mur2	Alu	chr8B1_Mur288227623	ProperStrand	1	chr1	155649076	155649134	protein_coding	Rgsl1	intron	ENSMUSG00000042641	NonProperStrand	24	1	-inf
chr4	140236075	140236126	lincRNA	Gm13025	intron	ENSMUSG00000086159	NonProperStrand	6	chr13	97190562	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr14	49751477	49751493	SINE	B2_Mm2	B2	chr14B2_Mm249751432	NonProperStrand	1	chr18	35899411	35899498	protein_coding	Tmem173	intron	ENSMUSG00000024349	NonProperStrand	2	1	-inf
chr5	142490132	142490226	protein_coding	Sdk1	intron	ENSMUSG00000039683	NonProperStrand	86	chr1	133657899	133657960	protein_coding	Slc26a9	intron	ENSMUSG00000042268	NonProperStrand	64	1	-11.1686
chr5	65489613	65489663	LTR	MTC-int	MaLR	chr5MTC-int65488863	ProperStrand	4	chr5	65491632	65491672	SINE	B3A	B2	chr5B3A65491602	NonProperStrand	1	1	-inf
chr17	39847615	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	111194991	111195031	SINE	B4A	B4	chr8B4A111194970	ProperStrand	1	1	-inf
chr17	39843817	39843897	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr10	59550302	59550375	protein_coding	Ascc1	intron	ENSMUSG00000044475	NonProperStrand	55	1	-3.1364
chr16	19538134	19538234	LINE	L1_Mur2	L1	chr16L1_Mur219537391	ProperStrand	1	chr16	19538380	19538470	LINE	L1_Mus1	L1	chr16L1_Mus119538317	ProperStrand	1	1	-inf
chr17	39847762	39847842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	49001032	49001067	protein_coding-noncoding	C330027C09Rik	utr5	ENSMUSG00000033031	ProperStrand	2	1	-5.4040
chr9	110172338	110172393	SINE	ID	ID	chr9ID110172350	NonProperStrand	1	chr11	100616041	100616082	protein_coding	Kcnh4	intron	ENSMUSG00000035355	ProperStrand	18	1	-inf
chr3	39868027	39868117	LINE	L1VL2	L1	chr3L1VL239867962	NonProperStrand	2	chr3	39870186	39870285	LINE	L1VL2	L1	chr3L1VL239868432	NonProperStrand	1	1	-inf
chr2	30819180	30819270	protein_coding-noncoding	Tor1a	utr3	ENSMUSG00000026849	NonProperStrand	11	chr2	30819293	30819393	protein_coding	Tor1a	exon	ENSMUSG00000026849	NonProperStrand	22	1	-17.5975
chr10	86703508	86704300	DNA	URR1A	MER1_type	chr10URR1A86703433	NonProperStrand	1	chr8	91554091	91554181	protein_coding	Sall1	exon	ENSMUSG00000031665	NonProperStrand	129	1	-inf
chr12	109584253	109584331	protein_coding	Cyp46a1	intron	ENSMUSG00000021259	ProperStrand	108	chr6	94206661	94206717	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-5.1349
chr11	69575930	69576030	SINE	B4	B4	chr11B469575879	ProperStrand	3	chr11	69576049	69576139	Simple_repeat	(TTTC)n	Simple_repeat	chr11(TTTC)n69576050	NonProperStrand	3	3	-inf
chr12	102662629	102662720	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	chr19	60221641	60221692	protein_coding	E330013P04Rik	intron	ENSMUSG00000053117	NonProperStrand	4	1	-13.4355
chr14	113235758	113235858	LINE	Lx5	L1	chr14Lx5113235607	ProperStrand	1	chr14	113235483	113235573	LTR	MTB	MaLR	chr14MTB113235210	ProperStrand	1	1	-inf
chr9	57546745	57546788	protein_coding	Cyp1a1	intron	ENSMUSG00000032315	ProperStrand	1	chr2	5379285	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr11	100453765	100453855	protein_coding	Dnajc7	intron	ENSMUSG00000014195	ProperStrand	28	chr12	67667896	67667996	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-13.1173
chr5	134284790	134284820	LTR	MT2A	ERVL	chr5MT2A134284765	ProperStrand	1	chr5	134284572	134284640	LTR	RLTR28	ERVL	chr5RLTR28134284244	ProperStrand	1	1	-inf
chr11	4141419	4141448	LTR	RMER15	ERVL	chr11RMER154141288	NonProperStrand	1	chr3	94487763	94487809	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-inf
chr7	37980293	37980393	LTR	ORR1D2	MaLR	chr7ORR1D237980047	ProperStrand	1	chr7	37980477	37980567	SINE	B3A	B2	chr7B3A37980400	NonProperStrand	4	1	-inf
chr17	39846816	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	48542696	48542758	Other	RMER1B	Other	chr4RMER1B48542524	NonProperStrand	1	1	-inf
chr8	36533064	36533155	protein_coding	Eri1	intron	ENSMUSG00000031527	ProperStrand	4	chr11	54939709	54940729	protein_coding	Slc36a3	intron	ENSMUSG00000049491	ProperStrand	154	1	-15.8269
chrX	59141152	59141171	LINE	L1_Mus2	L1	chrXL1_Mus259139932	ProperStrand	1	chr6	49236482	49236588	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-inf
chr5	131891866	131891928	LTR	MLT1A1-int	MaLR	chr5MLT1A1-int131891502	NonProperStrand	2	chr5	131925763	131925815	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-14.6616
chr17	39846802	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	145350978	145350997	LTR	RLTR10-int	ERVK	chr4RLTR10-int145349525	NonProperStrand	1	1	-inf
chr1	172542880	172542970	SINE	B2_Mm2	B2	chr1B2_Mm2172542778	ProperStrand	3	chr1	172543022	172543228	SINE	ID4_	ID	chr1ID4_172543033	NonProperStrand	3	3	-inf
chr8	41286056	41286107	LINE	L1Md_A	L1	chr8L1Md_A41282479	NonProperStrand	4	chr17	39846453	39846495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr9	27038964	27039056	LINE	L1_Mus1	L1	chr9L1_Mus127038752	NonProperStrand	3	chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	1	-19.2637
chr16	86762353	86762453	LINE	L1MB7	L1	chr16L1MB786762326	ProperStrand	1	chr16	86762094	86762184	LINE	L1Md_F2	L1	chr16L1Md_F286761830	NonProperStrand	1	1	-inf
chr3	95645493	95645573	protein_coding	Prpf3	intron	ENSMUSG00000015748	NonProperStrand	78	chr13	97190590	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6162
chr17	39846750	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	111588308	111588327	protein_coding	Trim30a	intron	ENSMUSG00000030921	NonProperStrand	4	2	-6.6967
chr10	31746559	31951131	LINE	L1_Mus2	L1	chr10L1_Mus231841483	ProperStrand	1	chr17	39846831	39846932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	78918218	78918301	protein_coding	Akap11	intron	ENSMUSG00000022016	NonProperStrand	27	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.6986
chr4	130329197	130329295	protein_coding	Pum1	intron	ENSMUSG00000028580	NonProperStrand	34	chr9	96737841	96737862	protein_coding	Acpl2	intron	ENSMUSG00000043587	ProperStrand	23	1	-15.1161
chr13	29953043	29953075	SINE	B3	B2	chr13B329952973	NonProperStrand	1	chr6	38705084	38705183	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	1	-inf
chr9	49039440	49039530	LINE	L1M2	L1	chr9L1M249039421	ProperStrand	2	chr9	49039645	49039745	LINE	L1_Mur3	L1	chr9L1_Mur349039625	ProperStrand	3	2	-inf
chr5	122619157	122619247	protein_coding-noncoding	Ppp1cc	utr5	ENSMUSG00000004455	NonProperStrand	1	chr5	122618629	122618729	protein_coding	Ppp1cc	intron	ENSMUSG00000004455	NonProperStrand	2	1	-inf
chr18	6670392	6670482	LTR	ORR1A3-int	MaLR	chr18ORR1A3-int6669824	NonProperStrand	1	chr18	6670937	6671037	LTR	ORR1A3	MaLR	chr18ORR1A36670951	NonProperStrand	1	1	-inf
chr17	39846401	39846645	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	149150731	149156281	antisense	Gm16188	.	ENSMUSG00000085368	NonProperStrand	13	3	-4.6386
chr4	70620460	70620550	LINE	Lx5	L1	chr4Lx570620461	ProperStrand	1	chr4	70620704	70620804	LINE	Lx5	L1	chr4Lx570620615	ProperStrand	1	1	-inf
chr4	99762873	99762911	SINE	B1_Mur1	Alu	chr4B1_Mur199762832	ProperStrand	4	chr9	123462079	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-10.7746
chr10	40258575	40258665	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr13	113838982	113839082	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	1	-3.1645
chr7	96529476	96529530	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	chr4	59724157	59724209	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	ProperStrand	123	1	-7.4690
chr1	119598429	119598530	LINE	Lx3B	L1	chr1Lx3B119597691	ProperStrand	3	chr1	119598548	119598638	LTR	IAPLTR1a_Mm	ERVK	chr1IAPLTR1a_Mm119598513	ProperStrand	3	3	-inf
chr9	123462102	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	5032123	5032139	protein_coding	Epn1	utr5	ENSMUSG00000035203	NonProperStrand	2	1	-8.0983
chr14	47672258	47672295	protein_coding	Samd4	intron	ENSMUSG00000021838	ProperStrand	53	chr2	76422988	76423038	protein_coding	Osbpl6	intron	ENSMUSG00000042359	ProperStrand	35	1	-13.3617
chr1	161035403	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr11	120812169	120812310	protein_coding	Slc16a3	utr5	ENSMUSG00000025161	NonProperStrand	149	1	-10.6047
chr17	29367405	29367958	protein_coding	Cpne5	intron	ENSMUSG00000024008	NonProperStrand	18	chr12	17739833	17739865	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-11.0368
chr15	79958999	79959089	LINE	L2b	L2	chr15L2b79959024	NonProperStrand	6	chr15	79958906	79959006	LTR	MTEb	MaLR	chr15MTEb79958738	NonProperStrand	3	3	-inf
chr5	135532286	135532324	protein_coding-noncoding	Wbscr22	utr3	ENSMUSG00000005378	ProperStrand	4	chr5	135532947	135533028	protein_coding	Wbscr22	intron	ENSMUSG00000005378	ProperStrand	3	1	-inf
chr18	31789736	31789826	Low_complexity	CT-rich	Low_complexity	chr18CT-rich31789500	ProperStrand	1	chr18	31789902	31790002	Low_complexity	CT-rich	Low_complexity	chr18CT-rich31789750	ProperStrand	1	1	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	46174752	46174877	LTR	MurERV4_19-int	ERVK	chr19MurERV4_19-int46174673	ProperStrand	2	2	-inf
chr18	84939150	84939186	Low_complexity	CT-rich	Low_complexity	chr18CT-rich84939152	ProperStrand	1	chr18	84941029	84941055	SINE	B4A	B4	chr18B4A84940932	NonProperStrand	1	1	-inf
chr10	48618975	48618992	LINE	Lx4B	L1	chr10Lx4B48618499	NonProperStrand	2	chr17	39846657	39846684	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	115604357	115604378	LINE	L1MA5	L1	chr11L1MA5115604228	ProperStrand	1	chr9	123461888	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	15544689	15544754	protein_coding	Slc36a4	utr3	ENSMUSG00000043885	ProperStrand	8	chr16	87409323	87409366	protein_coding	Ltn1	intron	ENSMUSG00000052299	ProperStrand	28	1	-17.6903
chr17	39848598	39848635	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr10	38965546	38965565	LTR	MER110A	ERV1	chr10MER110A38965518	ProperStrand	1	1	-inf
chr7	126559679	126559721	LTR	IAPEz-int	ERVK	chr7IAPEz-int126556580	ProperStrand	9	chr7	126559916	126560028	LTR	IAPEz-int	ERVK	chr7IAPEz-int126559856	ProperStrand	1	1	-inf
chr15	96345748	96345838	LTR	RMER19B	ERVK	chr15RMER19B96345576	ProperStrand	1	chr15	96345513	96345613	SINE	B1_Mus1	Alu	chr15B1_Mus196345465	NonProperStrand	1	1	-inf
chr17	39846580	39846660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	12682762	12682778	protein_coding	Gm4952	intron	ENSMUSG00000071633	NonProperStrand	3	1	-4.3017
chr2	32159853	32159945	protein_coding	Golga2	intron	ENSMUSG00000002546	ProperStrand	57	chr10	70389021	70389089	protein_coding	4930533K18Rik	intron	ENSMUSG00000047692	ProperStrand	31	1	-13.4629
chr3	98334723	98334782	LINE	L1Md_T	L1	chr3L1Md_T98334036	ProperStrand	3	chr6	3201485	3201534	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-9.0398
chr19	36891036	36891075	SINE	B3A	B2	chr19B3A36890979	NonProperStrand	1	chr2	10451417	10451446	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-inf
chr17	39847682	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	108264913	108264956	protein_coding	Orc1	intron	ENSMUSG00000028587	NonProperStrand	2	1	-5.4040
chr10	80502655	80502745	LTR	ORR1B1	MaLR	chr10ORR1B180502559	ProperStrand	1	chr10	80503071	80503171	SINE	B1_Mus1	Alu	chr10B1_Mus180503049	ProperStrand	1	1	-inf
chr17	39847611	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	51469136	51469191	SINE	B3	B2	chr6B351469112	ProperStrand	1	1	-inf
chrX	48121916	48121933	LINE	L1Md_F2	L1	chrXL1Md_F248119935	NonProperStrand	5	chr9	123461822	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chrX	73764654	73764675	LINE	L1_Mus3	L1	chrXL1_Mus373764479	NonProperStrand	2	chr2	154479390	154479488	protein_coding	Chmp4b	intron	ENSMUSG00000038467	ProperStrand	81	1	-18.6285
chr7	122971256	122971319	protein_coding	Sox6	intron	ENSMUSG00000051910	NonProperStrand	155	chr6	85619847	85619927	protein_coding	Alms1	intron	ENSMUSG00000063810	ProperStrand	47	1	-10.6097
chr8	83716633	83716701	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int83714337	ProperStrand	6	chr14	79630532	79630612	protein_coding	Zfp957	intron	ENSMUSG00000071262	NonProperStrand	20	1	-19.3610
chr13	97190562	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr12	80868433	80868514	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-3.0832
chr6	3201478	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	127993617	127993733	protein_coding	Eef2k	intron	ENSMUSG00000035064	NonProperStrand	12	1	-5.9865
chr9	48388721	48388821	SINE	B3	B2	chr9B348388648	ProperStrand	1	chr9	48388980	48389070	SINE	PB1D9	Alu	chr9PB1D948388952	ProperStrand	1	1	-inf
chr5	146261159	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr13	23571444	23571792	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	2	-9.7108
chr15	76249843	76249889	protein_coding	Heatr7a	intron	ENSMUSG00000022558	ProperStrand	9	chr12	109681520	109681592	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-11.6708
chr8	39061038	39061057	protein_coding	Sgcz	intron	ENSMUSG00000039539	ProperStrand	13	chr12	79768174	79768228	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-10.0130
chr4	16390593	16390693	LINE	L1_Mus1	L1	chr4L1_Mus116390509	NonProperStrand	1	chr4	16390002	16390092	Simple_repeat	(TTTC)n	Simple_repeat	chr4(TTTC)n16390002	ProperStrand	1	1	-inf
chr5	67504983	67505009	LINE	L1_Mus3	L1	chr5L1_Mus367504726	NonProperStrand	1	chrX	71441340	71441376	protein_coding	Tktl1	intron	ENSMUSG00000031397	NonProperStrand	6	1	-inf
chr18	67071957	67072057	LINE	L1_Rod	L1	chr18L1_Rod67071447	ProperStrand	1	chr18	67072248	67072338	LINE	L1_Rod	L1	chr18L1_Rod67072155	ProperStrand	1	1	-inf
chr5	138377539	138377629	LINE	L1_Mus1	L1	chr5L1_Mus1138376810	ProperStrand	1	chr5	138339168	138339268	protein_coding	Cyp3a13	intron	ENSMUSG00000029727	NonProperStrand	23	1	-inf
chr15	57724815	57724911	LTR	LTR65	ERV1	chr15LTR6557724748	NonProperStrand	1	chr2	121727520	121727578	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-inf
chr7	102441915	102441940	LINE	Lx4A	L1	chr7Lx4A102441216	NonProperStrand	4	chr4	33402149	33402231	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	100	1	-16.6944
chr10	108811981	108812039	LINE	Lx8	L1	chr10Lx8108811742	NonProperStrand	1	chr7	111076190	111076226	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-inf
chr17	39847440	39847516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	33031471	33031536	LTR	RLTR45	ERVK	chr6RLTR4533031068	ProperStrand	2	1	-5.4040
chr17	39848478	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	23675244	23675261	SINE	B1_Mur2	Alu	chr17B1_Mur223675191	ProperStrand	1	1	-inf
chr7	52582136	52582226	protein_coding	Trpm4	intron	ENSMUSG00000038260	NonProperStrand	2	chr15	10316591	10316691	protein_coding	Agxt2	intron	ENSMUSG00000089678	ProperStrand	3	1	-20.8297
chrX	101705359	101705436	LINE	L1MEf	L1	chrXL1MEf101705287	NonProperStrand	6	chr10	10686659	10686678	protein_coding	Grm1	intron	ENSMUSG00000019828	NonProperStrand	10	1	-21.3688
chr3	142345461	142345561	LTR	MMETn-int	ERVK	chr3MMETn-int142345282	ProperStrand	2	chr3	142345619	142345709	LTR	RLTRETN_Mm	ERVK	chr3RLTRETN_Mm142345587	ProperStrand	2	2	-inf
chr5	146261157	146261195	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	114413080	114413195	protein_coding	Ssh1	intron	ENSMUSG00000042121	NonProperStrand	37	1	-6.0103
chr9	54904067	54904163	LTR	LTR33C	ERVL	chr9LTR33C54904008	ProperStrand	1	chr9	123462104	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	65537492	65566053	LTR	RMER19C	ERVK	chr5RMER19C65565561	NonProperStrand	1	chr11	101442771	101442788	protein_coding	Nbr1	utr3	ENSMUSG00000017119	ProperStrand	27	1	-inf
chr17	39846815	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	119021734	119021781	SINE	B3A	B2	chr1B3A119021723	NonProperStrand	1	1	-inf
chr17	39847575	39847593	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	12707836	12707919	Simple_repeat	(GAAA)n	Simple_repeat	chr1(GAAA)n12707786	ProperStrand	1	1	-inf
chr5	140146902	140146992	SINE	B1F	Alu	chr5B1F140146864	ProperStrand	1	chr5	140146792	140146892	Satellite	ZP3AR	Satellite	chr5ZP3AR140146354	ProperStrand	2	1	-inf
chr6	131881748	131881848	LINE	L1Md_A	L1	chr6L1Md_A131874876	ProperStrand	1	chr6	131881995	131882085	LTR	MurERV4_19-int	ERVK	chr6MurERV4_19-int131881867	ProperStrand	1	1	-inf
chr10	28922296	28922396	LINE	L1Md_T	L1	chr10L1Md_T28921687	NonProperStrand	1	chr6	31784989	31785079	lincRNA	Gm13849	intron	ENSMUSG00000087379	NonProperStrand	3	1	-inf
chr6	3201478	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	94264848	94264976	LTR	IAPLTR2a	ERVK	chr8IAPLTR2a94264746	NonProperStrand	2	2	-inf
chr14	122236282	122236421	LTR	RLTR20B3	ERVK	chr14RLTR20B3122236229	ProperStrand	1	chr16	20233406	20233425	protein_coding	Map6d1	utr3	ENSMUSG00000041205	NonProperStrand	2	1	-inf
chr13	48509723	48509823	LTR	ORR1D1	MaLR	chr13ORR1D148509654	ProperStrand	1	chr9	60471528	60471618	protein_coding	Lrrc49	intron	ENSMUSG00000047766	NonProperStrand	6	1	-inf
chr3	35490871	35490888	LINE	L1Md_F2	L1	chr3L1Md_F235489634	NonProperStrand	1	chr8	113644332	113644432	protein_coding	Pdpr	intron	ENSMUSG00000033624	ProperStrand	8	1	-inf
chr10	80540583	80540664	protein_coding	Thop1	intron	ENSMUSG00000004929	NonProperStrand	9	chr11	73083073	73083101	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-17.0674
chr14	57604489	57605195	LTR	MERVL-int	ERVL	chr14MERVL-int57604486	NonProperStrand	1	chr14	57603730	57604462	LTR	MT2C_Mm	ERVL	chr14MT2C_Mm57604010	NonProperStrand	1	1	-inf
chr6	50256557	50256648	protein_coding	Osbpl3	intron	ENSMUSG00000029822	ProperStrand	33	chr7	126863608	126863666	protein_coding	Thumpd1	intron	ENSMUSG00000030942	NonProperStrand	18	1	-15.6845
chr11	6354444	6354534	LTR	RLTR10B2	ERVK	chr11RLTR10B26354271	ProperStrand	1	chr11	6354166	6354266	LTR	RLTR12B	ERVK	chr11RLTR12B6354087	ProperStrand	1	1	-inf
chr9	114554274	114554374	SINE	RSINE1	B4	chr9RSINE1114554295	NonProperStrand	1	chr9	114554186	114554276	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n114554202	ProperStrand	1	1	-inf
chr17	39844680	39844718	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr7	4708801	4708849	antisense	Fam71e2	.	ENSMUSG00000049952	NonProperStrand	6	1	-7.0808
chr13	119601475	119601515	LINE	L1_Mus1	L1	chr13L1_Mus1119601176	ProperStrand	1	chr17	39846736	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847277	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	83396207	83396258	SINE	MIRb	MIR	chr10MIRb83396145	ProperStrand	3	1	-5.4882
chr17	39847685	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	20724401	20724499	protein_coding-noncoding	Etl4	utr5	ENSMUSG00000036617	ProperStrand	5	1	-3.2379
chr9	123461905	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	30657816	30657833	protein_coding	Ccdc164	intron	ENSMUSG00000073102	NonProperStrand	4	1	-6.3300
chr17	39847277	39847351	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	92204727	92204800	LTR	ORR1B1	MaLR	chr6ORR1B192204747	ProperStrand	1	1	-inf
chr2	157325791	157325814	SINE	B2_Mm1a	B2	chr2B2_Mm1a157325688	NonProperStrand	2	chr19	37348225	37348270	protein_coding	Ide	intron	ENSMUSG00000056999	ProperStrand	48	1	-19.2501
chr17	39846656	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	33810089	33810117	Low_complexity	GA-rich	Low_complexity	chr3GA-rich33810095	ProperStrand	1	1	-inf
chr17	39846453	39846486	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	23576804	23576837	LTR	ORR1E-int	MaLR	chr5ORR1E-int23576550	NonProperStrand	3	1	-4.3017
chr6	83958030	83958049	DNA	URR1A	MER1_type	chr6URR1A83957990	ProperStrand	1	chr7	116294898	116294960	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	1	-inf
chr10	107545863	107545953	LTR	MTA_Mm	MaLR	chr10MTA_Mm107545855	NonProperStrand	1	chr10	107545642	107545742	LTR	RLTR20B3	ERVK	chr10RLTR20B3107545482	NonProperStrand	1	1	-inf
chr4	43541895	43541971	SINE	B4A	B4	chr4B4A43541896	NonProperStrand	1	chr4	43542284	43542357	SINE	PB1D10	Alu	chr4PB1D1043542231	ProperStrand	1	1	-inf
chr5	144107818	144107914	SINE	B1_Mur2	Alu	chr5B1_Mur2144107832	NonProperStrand	1	chr10	128084304	128084347	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	114	1	-inf
chr17	43079409	43079435	SINE	B1F	Alu	chr17B1F43079351	ProperStrand	1	chr17	43079698	43079775	SINE	RSINE1	B4	chr17RSINE143079652	NonProperStrand	1	1	-inf
chr1	33459415	33459519	DNA	Charlie2b	MER1_type	chr1Charlie2b33459355	NonProperStrand	1	chr11	95771810	95771850	protein_coding	B4galnt2	intron	ENSMUSG00000013418	NonProperStrand	47	1	-inf
chr8	78073679	78073752	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	chr9	65201724	65201807	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-6.9763
chr5	99978696	99978763	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	119	chr8	124692309	124692366	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-4.8772
chr19	32511273	32511373	LINE	Lx6	L1	chr19Lx632511076	NonProperStrand	1	chr19	32511511	32511601	LTR	ORR1A2	MaLR	chr19ORR1A232511537	NonProperStrand	1	1	-inf
chr5	105723693	105723789	LTR	ORR1A1	MaLR	chr5ORR1A1105723548	ProperStrand	1	chr5	105715284	105715324	protein_coding	Gbp6	intron	ENSMUSG00000079362	NonProperStrand	66	1	-inf
chr4	150598305	150598332	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr5	148315311	148315328	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-7.6728
chr17	39846389	39846406	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	125484972	125485012	SINE	B1_Mus2	Alu	chr6B1_Mus2125484863	ProperStrand	1	1	-inf
chr8	69894281	69894314	LTR	IAPLTR3-int	ERVK	chr8IAPLTR3-int69892619	NonProperStrand	11	chr2	71845408	71845512	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-13.8031
chr10	80829052	80829211	protein_coding	Fzr1	utr3	ENSMUSG00000020235	NonProperStrand	7	chr10	80826732	80828725	protein_coding	Mfsd12	utr3	ENSMUSG00000034854	ProperStrand	42	3	-inf
chr15	98933169	98934369	protein_coding	Dnajc22	intron	ENSMUSG00000038009	NonProperStrand	43	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.1358
chr9	65446507	65446535	LTR	MYSERV6-int	ERVK	chr9MYSERV6-int65446163	NonProperStrand	4	chr9	123461890	123461928	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr1	63451355	63451455	LTR	ORR1B1	MaLR	chr1ORR1B163451349	ProperStrand	3	chr1	63451258	63451348	SINE	MIR	MIR	chr1MIR63451173	ProperStrand	2	2	-inf
chr17	39847277	39847327	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	34335842	34335858	protein_coding-noncoding	Psmb8	utr5	ENSMUSG00000024338	NonProperStrand	2	1	-6.5615
chr8	45305846	45305862	LINE	L1MCb	L1	chr8L1MCb45305797	NonProperStrand	4	chr17	39846427	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr13	67342841	67342880	SINE	B4	B4	chr13B467342811	NonProperStrand	1	chr16	58680030	58680076	protein_coding	Cpox	utr3	ENSMUSG00000022742	ProperStrand	9	1	-inf
chrX	87238355	87238375	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr8	33801998	33802082	SINE	B3	B2	chr8B333801899	ProperStrand	1	1	-inf
chr10	4359052	4359184	LINE	L1_Mus2	L1	chr10L1_Mus24357960	NonProperStrand	20	chr4	32749088	32749107	protein_coding	Mdn1	intron	ENSMUSG00000058006	NonProperStrand	27	1	-15.8738
chr14	99308692	99308792	LTR	MLT1A0	MaLR	chr14MLT1A099308638	ProperStrand	6	chr14	99308544	99308634	Simple_repeat	(TG)n	Simple_repeat	chr14(TG)n99308535	ProperStrand	4	4	-inf
chr4	70226123	70226194	LINE	L1_Mur1	L1	chr4L1_Mur170225980	ProperStrand	4	chr17	39843496	39843557	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-7.9732
chr11	6416247	6416710	protein_coding-noncoding	Myo1g	utr3	ENSMUSG00000020437	NonProperStrand	10	chr11	6416105	6416859	protein_coding	Myo1g	exon	ENSMUSG00000020437	NonProperStrand	91	6	-inf
chr11	61577682	61577799	LTR	RMER5	ERV1	chr11RMER561577678	NonProperStrand	5	chr11	61577573	61577706	SINE	B1_Mm	Alu	chr11B1_Mm61577527	ProperStrand	5	5	-inf
chr17	39846717	39846753	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	23815307	23815333	Low_complexity	T-rich	Low_complexity	chr17T-rich23815289	ProperStrand	1	1	-inf
chr19	10895361	10895423	protein_coding	Cd6	intron	ENSMUSG00000024670	NonProperStrand	8	chr10	61424598	61424682	protein_coding	Col13a1	intron	ENSMUSG00000058806	NonProperStrand	58	1	-16.2548
chr7	132389755	132389855	LINE	Lx8	L1	chr7Lx8132389710	ProperStrand	1	chr7	132389489	132389579	LTR	MLT1L	MaLR	chr7MLT1L132389459	ProperStrand	1	1	-inf
chr15	36598301	36598996	DNA	URR1B	MER1_type	chr15URR1B36598649	ProperStrand	3	chr17	30482266	30482312	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-13.5963
chr6	114872010	114872074	protein_coding	Vgll4	intron	ENSMUSG00000030315	ProperStrand	98	chr12	80441443	80441488	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-10.6697
chr14	69779071	69779161	SINE	B2_Mm2	B2	chr14B2_Mm269778989	ProperStrand	1	chr14	69779164	69779264	SINE	RSINE1	B4	chr14RSINE169779188	ProperStrand	1	1	-inf
chr8	31893771	31893871	LINE	L1Md_F2	L1	chr8L1Md_F231891562	ProperStrand	1	chr8	32611925	32612015	LTR	ORR1E	MaLR	chr8ORR1E32611827	NonProperStrand	1	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr10	25390526	25390601	LTR	RLTR11A	ERVK	chr10RLTR11A25390516	ProperStrand	4	1	-12.4656
chr17	39842999	39843055	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr18	64504401	64504867	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	1	-6.5660
chr16	13786735	13786790	protein_coding	Rrn3	intron	ENSMUSG00000022682	ProperStrand	46	chr9	114534231	114534271	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-8.5434
chr4	132542214	132542247	protein_coding	Fgr	exon	ENSMUSG00000028874	ProperStrand	28	chr10	61330825	61330848	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-9.7877
chr13	17698367	17698457	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	chr1	180028954	180029054	protein_coding	Gm16432	intron	ENSMUSG00000066667	ProperStrand	31	1	-13.4629
chr5	134453612	134453709	LTR	ORR1B1-int	MaLR	chr5ORR1B1-int134453621	NonProperStrand	1	chr5	134445583	134445627	SINE	B3	B2	chr5B3134445441	ProperStrand	1	1	-inf
chr6	11150510	11150610	LINE	Lx3B	L1	chr6Lx3B11149775	ProperStrand	1	chr6	11150670	11150760	LINE	Lx3B	L1	chr6Lx3B11150632	NonProperStrand	1	1	-inf
chr11	62403809	62404442	protein_coding-noncoding	Trpv2	utr5	ENSMUSG00000018507	NonProperStrand	4	chr9	72670115	72671290	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	3	-inf
chr8	40321444	40321480	Low_complexity	polypyrimidine	Low_complexity	chr8polypyrimidine40321425	ProperStrand	1	chr1	153269518	153269564	protein_coding-noncoding	1200016B10Rik	utr3	ENSMUSG00000052748	ProperStrand	3	1	-inf
chr5	140133571	140133671	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n140133502	NonProperStrand	1	chr5	140133631	140133721	Simple_repeat	(CCA)n	Simple_repeat	chr5(CCA)n140133649	NonProperStrand	1	1	-inf
chr6	4103508	4103608	LTR	ORR1C1	MaLR	chr6ORR1C14103466	NonProperStrand	1	chr1	181016330	181016420	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-inf
chrX	18241740	18245977	LINE	L1_Mus3	L1	chrXL1_Mus318241548	NonProperStrand	3	chrX	18238885	18241742	LTR	ORR1E	MaLR	chrXORR1E18238835	ProperStrand	3	3	-inf
chr13	114037469	114037511	LINE	L1Md_F2	L1	chr13L1Md_F2114035903	NonProperStrand	21	chr6	148806393	148806488	protein_coding	Caprin2	intron	ENSMUSG00000030309	ProperStrand	14	1	-17.0431
chr5	115474514	115474531	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr9	22479730	22479795	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	126	1	-7.6730
chr9	114553912	114554011	SINE	B2_Mm1a	B2	chr9B2_Mm1a114553807	NonProperStrand	2	chr9	114554073	114554163	SINE	B3	B2	chr9B3114554014	NonProperStrand	3	2	-inf
chr6	124996101	124996239	protein_coding-noncoding	Ing4	utr5	ENSMUSG00000030330	NonProperStrand	1	chr4	94535965	94535986	protein_coding	Tek	intron	ENSMUSG00000006386	NonProperStrand	54	1	-inf
chr8	117397564	117397635	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr6	124828162	124828223	protein_coding	Cd4	intron	ENSMUSG00000023274	ProperStrand	35	1	-7.1944
chr17	39848598	39848704	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	100528528	100528545	antisense	1810009N23Rik	.	ENSMUSG00000090062	ProperStrand	8	1	-5.4397
chr17	6232573	6232698	protein_coding	Tulp4	exon	ENSMUSG00000034377	ProperStrand	56	chr8	107932717	107932736	protein_coding	Kctd19	intron	ENSMUSG00000051648	NonProperStrand	4	1	-17.8402
chr2	112780065	112780991	protein_coding	Ryr3	intron	ENSMUSG00000057378	ProperStrand	31	chr4	149621375	149621424	protein_coding	Eno1	intron	ENSMUSG00000063524	ProperStrand	12	1	-16.6507
chr3	129627028	129627066	protein_coding	Ccdc109b	intron	ENSMUSG00000027994	NonProperStrand	64	chr9	56223905	56223962	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-8.3691
chr16	23111667	23111687	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr1	59704791	59704872	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	1	-9.7490
chr9	37489953	37490035	LINE	L1MA4	L1	chr9L1MA437489905	NonProperStrand	17	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.9833
chr1	105329058	105329158	LINE	L1_Mur1	L1	chr1L1_Mur1105328206	ProperStrand	3	chr1	105329224	105329314	LINE	Lx3A	L1	chr1Lx3A105329193	NonProperStrand	3	3	-inf
chr3	149687900	149687990	LINE	L1Md_F2	L1	chr3L1Md_F2149687762	NonProperStrand	1	chr3	149687668	149687768	LINE	Lx8	L1	chr3Lx8149687591	ProperStrand	1	1	-inf
chr17	39843617	39843669	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	5961688	5973518	protein_coding	Upf2	intron	ENSMUSG00000043241	ProperStrand	9	2	-10.2358
chr18	7886009	7886073	protein_coding	Wac	intron	ENSMUSG00000024283	ProperStrand	36	chr1	153907338	153907429	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	NonProperStrand	52	1	-13.3445
chr2	25192734	25192834	protein_coding	Man1b1	intron	ENSMUSG00000036646	NonProperStrand	18	chrX	152285697	152285787	protein_coding	Gm15155	intron	ENSMUSG00000055109	NonProperStrand	93	1	-13.5877
chr6	122731420	122731459	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr1	177034693	177034722	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	1	-8.3123
chr10	19970191	19970296	protein_coding	Mtap7	exon	ENSMUSG00000019996	ProperStrand	21	chr2	5379312	5379353	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.6136
chr17	39845505	39845603	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr18	10052133	10052158	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	5	1	-7.0883
chr1	84102127	84102228	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	chr16	35554276	35554319	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	1	-8.0075
chr17	39848497	39848568	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	132050015	132050096	protein_coding	Sesn2	intron	ENSMUSG00000028893	ProperStrand	15	1	-4.1773
chr1	13270400	13270500	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	chr17	30729238	30731099	protein_coding	Glo1	utr3	ENSMUSG00000024026	NonProperStrand	25	1	-11.5351
chr17	39847165	39847233	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	32485967	32486025	SINE	B1_Mur1	Alu	chr19B1_Mur132485939	ProperStrand	1	1	-inf
chr17	39847102	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	77582992	77583076	LTR	MT2C_Mm	ERVL	chrXMT2C_Mm77582795	NonProperStrand	1	1	-inf
chr9	106444127	106444172	LINE	Lx8	L1	chr9Lx8106443631	ProperStrand	1	chr4	53860733	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-inf
chr17	35899747	35899790	lincRNA	Gm20442	intron	ENSMUSG00000092600	ProperStrand	6	chr15	98546531	98546584	protein_coding	Ccdc65	intron	ENSMUSG00000003354	NonProperStrand	19	1	-19.0482
chr7	132729826	132729902	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n132729734	NonProperStrand	1	chr7	132730011	132730058	Simple_repeat	(CACG)n	Simple_repeat	chr7(CACG)n132729942	NonProperStrand	1	1	-inf
chr16	16417671	16417745	protein_coding	Fgd4	utr3	ENSMUSG00000022788	ProperStrand	40	chr2	76852911	76853164	protein_coding	Ccdc141	exon	ENSMUSG00000044033	NonProperStrand	5	1	-18.1368
chr18	34914067	34914167	lincRNA	2010110K18Rik	intron	ENSMUSG00000085410	NonProperStrand	7	chr18	34914171	34931654	protein_coding	Fam53c	utr3	ENSMUSG00000034300	NonProperStrand	18	2	-inf
chr2	90530942	90540042	protein_coding-noncoding	Nup160	utr5	ENSMUSG00000051329	NonProperStrand	15	chr2	90541938	90550722	protein_coding	Nup160	intron	ENSMUSG00000051329	NonProperStrand	92	5	-21.7701
chr2	61760984	61761041	SINE	B1_Mus2	Alu	chr2B1_Mus261760921	NonProperStrand	3	chr13	97190597	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr12	99645565	99645662	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	1	-9.8759
chr19	6957999	6958182	SINE	B1_Mus2	Alu	chr19B1_Mus26958103	NonProperStrand	5	chr19	6958840	6958930	SINE	B4A	B4	chr19B4A6958759	ProperStrand	5	5	-inf
chr16	94570978	94571078	SINE	B1F	Alu	chr16B1F94570987	NonProperStrand	1	chr16	94570855	94570945	Simple_repeat	(TTCC)n	Simple_repeat	chr16(TTCC)n94570877	ProperStrand	1	1	-inf
chr5	30945385	30945475	SINE	B1_Mur2	Alu	chr5B1_Mur230945356	NonProperStrand	2	chr5	30935910	30945387	SINE	RSINE1	B4	chr5RSINE130935924	NonProperStrand	2	2	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr9	111278271	111278384	protein_coding	Trank1	intron	ENSMUSG00000062296	ProperStrand	13	1	-10.9559
chr6	18853618	18853718	LINE	L1Md_T	L1	chr6L1Md_T18849885	ProperStrand	2	chr9	123461991	123462041	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	87980214	87980263	LTR	RMER16-int	ERVK	chr17RMER16-int87979504	NonProperStrand	8	chr17	87983502	87983586	Simple_repeat	(GA)n	Simple_repeat	chr17(GA)n87983524	ProperStrand	1	1	-inf
chr1	153098734	153098820	LTR	MTD	MaLR	chr1MTD153098585	NonProperStrand	1	chr9	123461801	123461874	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	121796397	121796487	protein_coding	Ctdspl2	intron	ENSMUSG00000033411	NonProperStrand	29	chr4	83329318	83329372	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-12.2209
chr9	50521850	50521877	protein_coding	Dixdc1	intron	ENSMUSG00000032064	ProperStrand	17	chr16	28871752	28871775	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	1	-13.1777
chr4	141694998	141695088	protein_coding	Kazn	intron	ENSMUSG00000040606	ProperStrand	60	chr19	28679178	28679278	protein_coding	Glis3	intron	ENSMUSG00000052942	ProperStrand	174	1	-9.8866
chr17	39847551	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	47010176	47010213	SINE	B3	B2	chr17B347010084	ProperStrand	1	1	-inf
chr4	146919828	146919923	LTR	MMETn-int	ERVK	chr4MMETn-int146918987	NonProperStrand	3	chr4	147480238	147480304	protein_coding	2610109H07Rik	intron	ENSMUSG00000029005	NonProperStrand	12	1	-21.1865
chrX	73674644	73674709	LINE	L1_Mur2	L1	chrXL1_Mur273673023	ProperStrand	20	chr8	95718689	95718751	protein_coding	Ces1d	intron	ENSMUSG00000056973	NonProperStrand	52	1	-14.5439
chr12	86725653	86725678	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n86725649	NonProperStrand	4	chr9	123461930	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	4	-inf
chr4	16445564	16445654	LINE	L1MA4	L1	chr4L1MA416445370	ProperStrand	1	chr4	16445761	16445861	LINE	Lx2B	L1	chr4Lx2B16445675	NonProperStrand	2	1	-inf
chr18	47365489	47365539	protein_coding	Commd10	intron	ENSMUSG00000042705	NonProperStrand	9	chr4	59667735	59667811	protein_coding	E130308A19Rik	intron	ENSMUSG00000045071	ProperStrand	123	1	-14.4705
chr17	39847804	39847857	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	35957156	35957240	SINE	RSINE1	B4	chr17RSINE135957172	ProperStrand	1	1	-inf
chr2	113843259	113843316	lincRNA	A530058N18Rik	exon	ENSMUSG00000092201	NonProperStrand	22	chr5	65680961	65680997	protein_coding	Rfc1	intron	ENSMUSG00000029191	ProperStrand	34	1	-15.2187
chr3	40855667	40855707	Other	RMER1B	Other	chr3RMER1B40855435	ProperStrand	1	chr1	58901230	58901312	protein_coding	Casp8	exon	ENSMUSG00000026029	NonProperStrand	2	1	-inf
chr17	39845964	39846007	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr6	120364599	120364700	protein_coding	Kdm5a	intron	ENSMUSG00000030180	ProperStrand	18	1	-4.1448
chr16	35981728	35981763	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr1	167340268	167340326	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	1	-6.6860
chr5	20940254	20940354	protein_coding-noncoding	Fam185a	utr5	ENSMUSG00000047221	NonProperStrand	4	chr5	20940391	20940481	protein_coding	Fam185a	intron	ENSMUSG00000047221	NonProperStrand	15	3	-inf
chr2	32779752	32779826	protein_coding	Fam129b	utr3	ENSMUSG00000026796	ProperStrand	30	chr4	104721825	104721859	protein_coding	Prkaa2	intron	ENSMUSG00000028518	NonProperStrand	20	1	-15.6614
chr3	153381552	153381665	protein_coding	St6galnac3	intron	ENSMUSG00000052544	ProperStrand	282	chr16	3854747	3854765	protein_coding	Zfp174	exon	ENSMUSG00000054939	NonProperStrand	4	1	-14.5995
chr7	125477896	125477926	LINE	Lx7	L1	chr7Lx7125477627	NonProperStrand	1	chr3	138804781	138804870	LTR	MTC-int	MaLR	chr3MTC-int138804800	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr6	88271356	88271397	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	1	-3.5817
chr17	39843830	39843909	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr5	23852210	23852279	protein_coding	Kcnh2	intron	ENSMUSG00000038319	NonProperStrand	16	1	-5.4983
chr17	39846816	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	38021682	38021772	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n38021645	ProperStrand	2	1	-5.3533
chr11	98221151	98222642	protein_coding	Stard3	intron	ENSMUSG00000018167	ProperStrand	5	chr11	117077242	117077380	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-15.3563
chr11	62552838	62552943	LINE	L1M2	L1	chr11L1M262551810	NonProperStrand	43	chr11	62552949	62553061	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n62552955	ProperStrand	12	12	-inf
chr17	39847026	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	109554648	109554677	antisense	Gm16208	.	ENSMUSG00000085464	ProperStrand	2	2	-inf
chr2	173132322	173132340	SINE	ID_B1	B4	chr2ID_B1173132292	NonProperStrand	3	chr2	41344451	41344467	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-17.6473
chr17	39846823	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	143189214	143189277	SINE	RSINE1	B4	chr6RSINE1143189180	NonProperStrand	1	1	-inf
chr11	83271494	83271585	protein_coding	Mmp28	intron	ENSMUSG00000020682	NonProperStrand	10	chr11	101604937	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	2	-20.8056
chr18	52868015	52868105	LINE	L1Md_F2	L1	chr18L1Md_F252867876	NonProperStrand	1	chr18	52867711	52867812	LINE	L1Md_F	L1	chr18L1Md_F52865940	NonProperStrand	1	1	-inf
chr2	31485047	31485137	SINE	B3	B2	chr2B331484898	NonProperStrand	2	chr2	31485143	31485243	SINE	B3	B2	chr2B331485068	NonProperStrand	2	2	-inf
chr10	78228669	78228693	LINE	Lx2	L1	chr10Lx278228441	NonProperStrand	1	chr17	39847836	39847870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	85822875	85822911	SINE	B1_Mus2	Alu	chr11B1_Mus285822858	NonProperStrand	1	chr11	85823396	85823518	SINE	B2_Mm2	B2	chr11B2_Mm285823428	ProperStrand	1	1	-inf
chr11	75598516	75598545	protein_coding	Doc2b	intron	ENSMUSG00000020848	NonProperStrand	28	chr4	149946177	149946290	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	1	-10.5552
chrX	4899373	4899396	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr16	35981616	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-12.3299
chr5	131978238	132542140	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr13	44869570	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	4	-3.3800
chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	73188342	73188426	protein_coding	Olfr376	exon	ENSMUSG00000063881	NonProperStrand	5	1	-3.1907
chr7	79486016	79486095	DNA	MER58A	MER1_type	chr7MER58A79486014	ProperStrand	1	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	112258334	112258434	Low_complexity	CT-rich	Low_complexity	chr10CT-rich112257947	NonProperStrand	1	chr10	112258621	112258711	Low_complexity	CT-rich	Low_complexity	chr10CT-rich112258618	NonProperStrand	1	1	-inf
chr12	100965616	100965676	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	ProperStrand	245	chr17	56784321	56784400	protein_coding	Tmem146	intron	ENSMUSG00000040828	NonProperStrand	78	1	-8.6774
chr5	143918551	143918641	LTR	RMER4B	ERVK	chr5RMER4B143918514	ProperStrand	1	chr5	143918110	143918210	Low_complexity	CT-rich	Low_complexity	chr5CT-rich143918046	NonProperStrand	1	1	-inf
chr17	39847241	39847305	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	7029163	7032579	protein_coding	Plcb3	intron	ENSMUSG00000024960	ProperStrand	22	2	-3.0362
chr13	102862208	102862301	LINE	L2	L2	chr13L2102862136	NonProperStrand	1	chr17	39847281	39847345	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	34001131	34001231	LINE	Lx2	L1	chr11Lx234000544	NonProperStrand	1	chr11	34001254	34001344	LINE	Lx2	L1	chr11Lx234001235	NonProperStrand	1	1	-inf
chr7	65893672	65893772	LINE	Lx5	L1	chr7Lx565893600	ProperStrand	1	chr7	65893506	65893596	LTR	ORR1A4	MaLR	chr7ORR1A465893302	NonProperStrand	1	1	-inf
chr12	85374394	85374485	LTR	ORR1E	MaLR	chr12ORR1E85374381	NonProperStrand	11	chr12	85374191	85374291	SINE	B3	B2	chr12B385374171	ProperStrand	5	5	-inf
chr1	56149110	56149210	LINE	L1Md_F3	L1	chr1L1Md_F356148980	ProperStrand	1	chr1	56149691	56149781	LINE	L1Md_T	L1	chr1L1Md_T56149229	ProperStrand	1	1	-inf
chr2	179350238	179350256	protein_coding	Cdh4	intron	ENSMUSG00000000305	NonProperStrand	11	chr11	12305026	12305098	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-12.5097
chr15	98841794	98841894	Simple_repeat	(CATA)n	Simple_repeat	chr15(CATA)n98841789	NonProperStrand	1	chr9	123461905	123461995	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	75101560	75101660	DNA	MER44D	MER2_type	chr11MER44D75101513	NonProperStrand	2	chr11	75101473	75101563	DNA	Tigger7	MER2_type	chr11Tigger775101414	ProperStrand	2	2	-inf
chr11	75733076	75751947	protein_coding	Rph3al	utr5	ENSMUSG00000020847	NonProperStrand	157	chr3	96501001	96501061	protein_coding	Pias3	utr5	ENSMUSG00000028101	NonProperStrand	1	1	-inf
chr9	121990741	121990815	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n121990636	NonProperStrand	1	chr13	112661355	112661439	lincRNA	Gm15326	exon	ENSMUSG00000086111	ProperStrand	2	1	-inf
chr10	117360930	117360988	SINE	B4	B4	chr10B4117360845	NonProperStrand	1	chr7	26400280	26400328	protein_coding	Gm7092	intron	ENSMUSG00000074261	NonProperStrand	2	1	-inf
chr2	91061730	91061812	protein_coding	Ddb2	intron	ENSMUSG00000002109	NonProperStrand	9	chr14	122114956	122115028	protein_coding	Dock9	intron	ENSMUSG00000025558	NonProperStrand	173	1	-13.7876
chr8	111825921	111825981	LINE	L1MEg	L1	chr8L1MEg111825902	ProperStrand	4	chr18	60776307	60776373	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	1	-15.8033
chr16	31863277	31867899	protein_coding-noncoding	Dlg1	utr5	ENSMUSG00000022770	ProperStrand	2	chr11	119674564	119674596	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	231	1	-16.7439
chr17	23919698	23919798	protein_coding	Flywch2	intron	ENSMUSG00000023911	ProperStrand	1	chr17	23901177	23901267	protein_coding	Flywch1	intron	ENSMUSG00000040097	ProperStrand	2	1	-inf
chrX	154836616	154836716	LINE	L1_Mur2	L1	chrXL1_Mur2154835101	NonProperStrand	1	chrX	154836815	154836905	LINE	L1_Mur2	L1	chrXL1_Mur2154836716	NonProperStrand	1	1	-inf
chr8	69100769	69100848	LINE	L1Md_F2	L1	chr8L1Md_F269100786	NonProperStrand	3	chr8	69100653	69100730	LINE	L1VL4	L1	chr8L1VL469098527	ProperStrand	3	1	-20.2168
chr1	118940387	118940459	LINE	L1Md_F2	L1	chr1L1Md_F2118939744	NonProperStrand	8	chr1	118941362	118941415	LINE	L1Md_F2	L1	chr1L1Md_F2118941257	ProperStrand	49	1	-16.5916
chr2	102829375	102829439	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr11	107030279	107030327	protein_coding	Nol11	intron	ENSMUSG00000018433	NonProperStrand	2	1	-17.3471
chr2	5379274	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr11	70985982	71003893	protein_coding	Nlrp1b	intron	ENSMUSG00000070390	ProperStrand	51	2	-8.0411
chr15	101996599	101996689	SINE	B1_Mur3	Alu	chr15B1_Mur3101996588	ProperStrand	1	chr15	101996742	101996842	SINE	B3A	B2	chr15B3A101996665	NonProperStrand	1	1	-inf
chr17	39847843	39847908	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	50631668	50631721	protein_coding	Zfp354c	intron	ENSMUSG00000044807	NonProperStrand	1	1	-inf
chr13	85288291	85288369	LINE	Lx7	L1	chr13Lx785286761	NonProperStrand	3	chr6	5131233	5131288	protein_coding	Pon1	intron	ENSMUSG00000002588	NonProperStrand	23	1	-19.7972
chr18	24580073	24580090	LTR	ORR1C1	MaLR	chr18ORR1C124579904	ProperStrand	2	chr18	65101352	65101388	protein_coding	Nedd4l	intron	ENSMUSG00000024589	ProperStrand	160	1	-17.4578
chr17	70794781	70794871	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr14	79522360	79522460	protein_coding	1300010F03Rik	intron	ENSMUSG00000058997	ProperStrand	49	4	-inf
chrX	122866649	122866739	LINE	L1VL1	L1	chrXL1VL1122863602	NonProperStrand	1	chr7	55209729	55209829	LTR	ORR1C2	MaLR	chr7ORR1C255209750	ProperStrand	1	1	-inf
chr17	39847552	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	122014705	122014721	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	NonProperStrand	3	1	-4.3512
chr17	24943277	24943324	protein_coding	4930528F23Rik	intron	ENSMUSG00000024155	NonProperStrand	27	chr9	40803994	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-9.0446
chr18	80843477	80843534	protein_coding	Nfatc1	intron	ENSMUSG00000033016	ProperStrand	40	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.7175
chr5	33891609	33892042	LINE	L1M5	L1	chr5L1M533891823	NonProperStrand	3	chr5	33892004	33893462	Other	RMER1B	Other	chr5RMER1B33892862	NonProperStrand	3	3	-inf
chr6	39324600	39324641	protein_coding	Slc37a3	intron	ENSMUSG00000029924	ProperStrand	41	chr9	68782121	68782232	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-10.3554
chr18	34245180	34245233	LTR	IAPEz-int	ERVK	chr18IAPEz-int34243674	NonProperStrand	9	chr18	34243215	34243292	SINE	B3	B2	chr18B334243109	ProperStrand	1	1	-inf
chr1	127792874	127792964	protein_coding	Lypd1	intron	ENSMUSG00000026344	NonProperStrand	85	chr3	158031530	158031630	protein_coding	Lrrc7	intron	ENSMUSG00000028176	ProperStrand	64	2	-17.4885
chr18	6311691	6311781	LTR	ORR1E	MaLR	chr18ORR1E6311497	ProperStrand	1	chr18	6311924	6312024	SINE	B1F	Alu	chr18B1F6311925	NonProperStrand	1	1	-inf
chr2	73012890	73012911	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr7	99478922	99479275	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-6.9561
chr15	95909924	95910024	LTR	MTC	MaLR	chr15MTC95909713	NonProperStrand	1	chr15	95909832	95909922	lincRNA	D030018L15Rik	exon	ENSMUSG00000078925	NonProperStrand	36	1	-inf
chr15	51830011	51830054	DNA	URR1A	MER1_type	chr15URR1A51830008	ProperStrand	1	chr19	5800082	5800125	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr17	39847073	39847172	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	120080327	120085879	protein_coding	Plcg2	intron	ENSMUSG00000034330	NonProperStrand	14	2	-4.2566
chr7	101778688	101778778	LINE	Lx6	L1	chr7Lx6101778524	NonProperStrand	1	chr7	101779343	101779443	LTR	MTEb	MaLR	chr7MTEb101779364	NonProperStrand	1	1	-inf
chr11	34798012	34798102	LINE	Lx4A	L1	chr11Lx4A34797884	NonProperStrand	1	chr11	34798204	34798304	SINE	B2_Mm2	B2	chr11B2_Mm234798194	NonProperStrand	1	1	-inf
chr5	106919345	106919361	SINE	B1F2	Alu	chr5B1F2106919299	ProperStrand	2	chr6	124818562	124819403	protein_coding	Cd4	intron	ENSMUSG00000023274	ProperStrand	35	1	-19.6352
chr7	126876092	126878732	LTR	MuRRS4-int	ERV1	chr7MuRRS4-int126874420	NonProperStrand	8	chr6	58896525	58896637	protein_coding	Fam13a	intron	ENSMUSG00000037709	NonProperStrand	17	1	-18.6149
chr5	144156974	144164645	antisense	RP23-372N19.1	.	ENSMUSG00000093720	NonProperStrand	16	chr5	144148291	144148351	protein_coding	Grid2ip	intron	ENSMUSG00000010825	ProperStrand	61	1	-14.6761
chr9	114390516	114390606	SINE	B3A	B2	chr9B3A114390509	ProperStrand	2	chr9	114390361	114390461	SINE	RSINE1	B4	chr9RSINE1114390315	NonProperStrand	7	2	-inf
chr17	39847183	39847211	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	90249159	90249379	SINE	B3	B2	chr3B390249337	NonProperStrand	1	1	-inf
chr16	61056409	61056436	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	4	chr11	105922648	105922665	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	1	-inf
chr17	39848164	39848198	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	87781420	87781531	LTR	RLTR10A	ERVK	chr1RLTR10A87781366	ProperStrand	1	1	-inf
chr18	63078738	63078754	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr12	80244809	80244839	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	1	-11.2087
chr2	22744854	22744901	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	150579409	150579446	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-3.1742
chr5	134438997	134439097	SINE	B1_Mur4	Alu	chr5B1_Mur4134438934	NonProperStrand	1	chr5	134438824	134438914	SINE	B3A	B2	chr5B3A134438775	ProperStrand	1	1	-inf
chr3	88485008	88485074	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int88484225	ProperStrand	2	chr2	90847385	90847458	protein_coding	Celf1	intron	ENSMUSG00000005506	ProperStrand	35	2	-inf
chr5	88577019	88577065	LINE	L1Md_A	L1	chr5L1Md_A88574957	NonProperStrand	24	chr13	113829374	113829476	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	1	-11.5439
chr5	20201531	20201621	protein_coding	Magi2	intron	ENSMUSG00000040003	NonProperStrand	35	chr5	19470885	19470985	protein_coding	Magi2	intron	ENSMUSG00000040003	ProperStrand	33	1	-14.3257
chr1	118942859	118942953	LINE	L1Md_F2	L1	chr1L1Md_F2118941257	ProperStrand	49	chr7	17034359	17034377	LINE	L1Md_F3	L1	chr7L1Md_F317034170	ProperStrand	2	1	-19.6220
chr17	39847233	39847256	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	137533505	137533538	SINE	B1_Mur2	Alu	chr4B1_Mur2137533430	NonProperStrand	2	1	-6.5615
chrX	124170472	124170562	LINE	Lx4A	L1	chrXLx4A124170465	NonProperStrand	1	chrX	124170340	124170440	LTR	RMER4B	ERVK	chrXRMER4B124169966	ProperStrand	1	1	-inf
chr14	17153828	17153928	LTR	MTEa	MaLR	chr14MTEa17153745	ProperStrand	1	chr14	17153926	17154016	LTR	MTEa	MaLR	chr14MTEa17153917	ProperStrand	1	1	-inf
chr2	127649656	127649746	protein_coding-noncoding	Bub1	utr3	ENSMUSG00000027379	NonProperStrand	1	chr2	127649853	127649953	protein_coding	Bub1	intron	ENSMUSG00000027379	NonProperStrand	3	1	-inf
chr10	83594421	83594533	LTR	RMER17C	ERVK	chr10RMER17C83594328	ProperStrand	5	chr17	39846460	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr5	3847419	3847463	protein_coding	Krit1	intron	ENSMUSG00000000600	ProperStrand	9	chr1	175622694	175622726	protein_coding	Pydc3	intron	ENSMUSG00000066677	NonProperStrand	23	1	-17.9614
chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	57237495	57237560	protein_coding	Gm11110	intron	ENSMUSG00000079414	ProperStrand	5	1	-3.2379
chr16	31039142	31039195	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	chr15	99037503	99037589	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	1	-8.8371
chr14	56742308	56742384	DNA	Charlie12	MER1_type	chr14Charlie1256742153	ProperStrand	1	chr17	39846833	39846899	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr16	50728086	50728156	protein_coding	5330426P16Rik	utr3	ENSMUSG00000022639	ProperStrand	8	chr9	123461973	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr9	59563688	59563778	protein_coding-noncoding	Gramd2	utr5	ENSMUSG00000074259	ProperStrand	6	chr9	59563812	59563912	protein_coding	Gramd2	intron	ENSMUSG00000074259	ProperStrand	30	4	-inf
chr15	69074786	69074837	LINE	Lx2	L1	chr15Lx269073748	NonProperStrand	1	chr17	56322547	56322624	protein_coding	D17Wsu104e	intron	ENSMUSG00000019579	NonProperStrand	80	1	-inf
chr2	177478037	177478138	LINE	L1VL1	L1	chr2L1VL1177476150	NonProperStrand	6	chr17	39847172	39847262	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.9545
chr4	148287802	148287819	antisense	Gm15969	.	ENSMUSG00000086766	ProperStrand	2	chr14	60646588	60646732	protein_coding-noncoding	Atp8a2	utr3	ENSMUSG00000021983	NonProperStrand	3	2	-inf
chr9	123462122	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	35257528	35257607	protein_coding	Cdon	intron	ENSMUSG00000038119	NonProperStrand	12	1	-4.0248
chr13	22035881	22035945	antisense	Gm11280	.	ENSMUSG00000085393	NonProperStrand	6	chr9	123461965	123462012	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr13	50768272	50768362	LINE	L1M2	L1	chr13L1M250768125	ProperStrand	1	chr13	50768422	50768522	SINE	RSINE1	B4	chr13RSINE150768358	ProperStrand	1	1	-inf
chr12	85999406	85999496	LTR	ORR1B2	MaLR	chr12ORR1B285999397	NonProperStrand	1	chr12	85999735	85999835	SINE	ID_B1	B4	chr12ID_B185999689	ProperStrand	1	1	-inf
chr2	167343715	167343806	SINE	B2_Mm2	B2	chr2B2_Mm2167343700	NonProperStrand	3	chr2	167317714	167317769	protein_coding	Spata2	intron	ENSMUSG00000047030	ProperStrand	27	3	-inf
chr1	165989603	165989700	LTR	ORR1B1	MaLR	chr1ORR1B1165989623	ProperStrand	1	chr5	146261301	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-inf
chr3	137869163	137869263	LTR	RLTR10-int	ERVK	chr3RLTR10-int137869157	ProperStrand	4	chr3	137869036	137869126	LTR	RLTR10	ERVK	chr3RLTR10137868725	ProperStrand	1	1	-inf
chr6	113076296	113076364	protein_coding	Setd5	intron	ENSMUSG00000034269	NonProperStrand	20	chr14	52174130	52175318	protein_coding	Gm5622	intron	ENSMUSG00000079244	NonProperStrand	57	1	-14.3558
chr17	39843754	39843819	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr3	68503158	68503214	SINE	B4A	B4	chr3B4A68503117	ProperStrand	1	1	-inf
chr17	39847804	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	119579021	119579045	protein_coding	Scn10a	intron	ENSMUSG00000034533	NonProperStrand	3	1	-4.3512
chr14	21632739	21632782	LINE	L1MB3	L1	chr14L1MB321632671	NonProperStrand	1	chr9	123461905	123462019	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	108262087	108262121	protein_coding	Apoh	intron	ENSMUSG00000000049	NonProperStrand	36	chr5	136532290	136532372	protein_coding	2310043J07Rik	intron	ENSMUSG00000006143	NonProperStrand	16	1	-15.7611
chr13	96483397	96483444	protein_coding	Iqgap2	intron	ENSMUSG00000021676	ProperStrand	82	chr7	141103151	141103993	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-9.1811
chr16	35811697	35811728	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	chr1	61982670	61982691	protein_coding	Pard3b	intron	ENSMUSG00000052062	NonProperStrand	28	1	-11.2507
chr17	39846411	39847027	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	13898976	13913790	protein_coding	Mllt4	intron	ENSMUSG00000068036	ProperStrand	17	3	-3.6562
chr17	39846660	39846716	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	34700765	34700820	SINE	B2_Mm1t	B2	chr2B2_Mm1t34700636	ProperStrand	1	1	-inf
chr15	102073950	102073988	protein_coding-noncoding	Rarg	utr3	ENSMUSG00000001288	NonProperStrand	1	chr15	102073987	102074072	protein_coding	Rarg	intron	ENSMUSG00000001288	NonProperStrand	44	1	-inf
chr10	75070766	75070866	protein_coding	Ggt5	intron	ENSMUSG00000006344	ProperStrand	42	chr1	72711283	72711721	protein_coding	Ankar	exon	ENSMUSG00000039342	NonProperStrand	61	1	-12.7100
chr10	95607772	95607872	SINE	B1_Mur4	Alu	chr10B1_Mur495607716	ProperStrand	1	chr10	95608419	95608509	SINE	MIR	MIR	chr10MIR95608444	ProperStrand	1	1	-inf
chr18	8519867	8519957	LINE	L1Md_F2	L1	chr18L1Md_F28515712	ProperStrand	1	chr13	29539922	29540022	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	1	-inf
chr15	36216718	36216818	SINE	B1F	Alu	chr15B1F36216677	NonProperStrand	1	chr15	36216971	36217061	SINE	ID_B1	B4	chr15ID_B136216929	ProperStrand	1	1	-inf
chr4	127022866	127022899	SINE	ID	ID	chr4ID127022857	NonProperStrand	2	chr4	127021415	127021516	SINE	PB1D10	Alu	chr4PB1D10127021384	NonProperStrand	4	1	-22.1285
chr2	146971060	146971135	Other	RMER1B	Other	chr2RMER1B146970590	ProperStrand	1	chr2	165864128	165864189	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	1	-inf
chr1	153515492	153518887	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	chr2	52131784	52131847	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-9.1677
chr10	128492656	128492723	LINE	L1Md_F	L1	chr10L1Md_F128491087	ProperStrand	14	chr2	5538952	5538984	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.4379
chr8	86524522	86524539	SINE	ID_B1	B4	chr8ID_B186524431	NonProperStrand	1	chr3	96763978	96764029	protein_coding	Gja5	intron	ENSMUSG00000057123	ProperStrand	33	1	-inf
chr17	56570503	56570607	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	78	chr9	110281294	110281346	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.0409
chr11	102321950	102322040	protein_coding-noncoding	Itga2b	utr3	ENSMUSG00000034664	ProperStrand	6	chr11	102040014	102040114	protein_coding	Lsm12	intron	ENSMUSG00000020922	ProperStrand	2	1	-inf
chr12	69226429	69228103	LINE	Lx3C	L1	chr12Lx3C69226024	NonProperStrand	2	chr7	25804649	25804769	protein_coding	Grik5	intron	ENSMUSG00000003378	ProperStrand	16	1	-inf
chr8	94842626	94842657	LINE	Lx7	L1	chr8Lx794842410	ProperStrand	1	chr17	39846954	39846980	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	115252602	115253838	LTR	MTE-int	MaLR	chr9MTE-int115252578	ProperStrand	1	chr9	115252503	115252603	LTR	ORR1A2	MaLR	chr9ORR1A2115252244	ProperStrand	1	1	-inf
chr7	144496233	144496264	protein_coding	Ebf3	intron	ENSMUSG00000010476	ProperStrand	116	chr19	8906516	8906627	protein_coding	Hnrnpul2	utr3	ENSMUSG00000071659	ProperStrand	40	1	-11.5164
chr10	77102246	77102360	protein_coding	Ube2g2	intron	ENSMUSG00000009293	NonProperStrand	37	chr6	87459282	87459302	protein_coding	Arhgap25	intron	ENSMUSG00000030047	NonProperStrand	3	3	-inf
chr7	101408092	101409324	LINE	L1Md_F	L1	chr7L1Md_F101408010	ProperStrand	9	chr7	101409329	101411008	LINE	L1Md_F2	L1	chr7L1Md_F2101410333	ProperStrand	14	9	-inf
chr10	59388818	59388872	SINE	B2_Mm1a	B2	chr10B2_Mm1a59388759	NonProperStrand	1	chr1	167244076	167244118	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	1	-inf
chr17	39846039	39846124	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	107012885	107012939	SINE	B1_Mm	Alu	chr11B1_Mm107012792	NonProperStrand	7	1	-6.0522
chrX	21652168	21652268	LINE	Lx3C	L1	chrXLx3C21652010	ProperStrand	1	chrX	21652736	21652826	LINE	Lx3C	L1	chrXLx3C21652331	NonProperStrand	1	1	-inf
chr6	88016846	88016865	LTR	MLT1J	MaLR	chr6MLT1J88016635	ProperStrand	1	chr8	105791448	105791538	LTR	ORR1B1	MaLR	chr8ORR1B1105791401	NonProperStrand	1	1	-inf
chr17	87638567	87638614	SINE	B1_Mur2	Alu	chr17B1_Mur287638572	ProperStrand	4	chr11	96113839	96113896	protein_coding	Gm53	intron	ENSMUSG00000078706	ProperStrand	4	4	-inf
chr11	23034545	23034596	LTR	MTA_Mm-int	MaLR	chr11MTA_Mm-int23033872	NonProperStrand	1	chr17	39846583	39846651	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	32751670	32751702	Low_complexity	polypurine	Low_complexity	chr5polypurine32751663	NonProperStrand	1	chr5	32752128	32752220	SINE	B3A	B2	chr5B3A32752131	NonProperStrand	1	1	-inf
chr1	143608471	143608493	LINE	Lx	L1	chr1Lx143607105	NonProperStrand	1	chr17	39847868	39847908	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	39548746	39548846	LINE	Lx5	L1	chr1Lx539548764	NonProperStrand	5	chr4	132309980	132310070	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-14.8930
chr7	126795516	126795579	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr3	108554585	108554636	protein_coding	Aknad1	utr5	ENSMUSG00000049565	NonProperStrand	220	1	-6.1938
chr1	104867107	104867207	LTR	RLTR31A_Mm	ERVK	chr1RLTR31A_Mm104866944	NonProperStrand	1	chr1	104866603	104866693	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n104866601	ProperStrand	1	1	-inf
chr4	149022421	149022521	protein_coding	Clstn1	utr3	ENSMUSG00000039953	NonProperStrand	81	chr10	94693611	94693701	protein_coding	Cradd	intron	ENSMUSG00000045867	NonProperStrand	36	1	-12.4514
chr6	95284555	95284655	DNA	MER58A	MER1_type	chr6MER58A95284554	ProperStrand	1	chr6	95284747	95284837	DNA	RMER30	MER1_type	chr6RMER3095284751	ProperStrand	1	1	-inf
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	145911718	145912422	protein_coding	4930529M08Rik	intron	ENSMUSG00000037143	ProperStrand	37	1	-7.0595
chr17	39847028	39847157	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	79818774	79818790	protein_coding	Filip1	intron	ENSMUSG00000034898	NonProperStrand	4	1	-3.6552
chr15	30844420	30844511	protein_coding	Ctnnd2	intron	ENSMUSG00000022240	NonProperStrand	18	chr15	30843063	30843163	protein_coding	Ctnnd2	intron	ENSMUSG00000022240	ProperStrand	32	1	-15.7301
chrX	20806996	20807059	LINE	L1Md_F2	L1	chrXL1Md_F220806438	NonProperStrand	3	chr17	39846822	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39843814	39843841	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	126390818	126390835	LTR	RLTR28	ERVL	chr1RLTR28126390719	NonProperStrand	1	1	-inf
chr18	47883079	47883169	LINE	L1_Mm	L1	chr18L1_Mm47882950	NonProperStrand	1	chr18	47882834	47882934	LTR	MTB_Mm	MaLR	chr18MTB_Mm47882814	NonProperStrand	1	1	-inf
chr5	146261163	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	65756916	65757020	protein_coding	Csnk1g1	utr5	ENSMUSG00000032384	NonProperStrand	105	1	-3.9944
chr13	74015251	74015341	LTR	RLTR10-int	ERVK	chr13RLTR10-int74014380	NonProperStrand	1	chr13	74015463	74015563	LTR	RLTR10-int	ERVK	chr13RLTR10-int74015459	NonProperStrand	1	1	-inf
chr11	68011336	68011352	protein_coding	Stx8	intron	ENSMUSG00000020903	ProperStrand	40	chr4	48438748	48438861	protein_coding	Invs	intron	ENSMUSG00000028344	NonProperStrand	29	1	-14.3136
chr15	51780932	51781019	LINE	L1MEc	L1	chr15L1MEc51780501	ProperStrand	2	chr9	123461930	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	179964392	179964446	SINE	B2_Mm1t	B2	chr2B2_Mm1t179964276	NonProperStrand	1	chr2	179964526	179964584	SINE	B2_Mm2	B2	chr2B2_Mm2179964493	NonProperStrand	1	1	-inf
chr10	127108675	127108765	antisense	Gm16230	.	ENSMUSG00000087163	ProperStrand	1	chr10	127108580	127108680	protein_coding	Tmem194	intron	ENSMUSG00000040195	NonProperStrand	7	1	-inf
chr19	24119970	24120015	LINE	L1MB7	L1	chr19L1MB724119558	NonProperStrand	5	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.6307
chr3	137746405	137746421	LTR	MLT1G1	MaLR	chr3MLT1G1137746106	ProperStrand	1	chr5	113659496	113659616	protein_coding	Tmem211	intron	ENSMUSG00000066964	NonProperStrand	2	1	-inf
chr1	115104450	115104550	LINE	L1Md_F2	L1	chr1L1Md_F2115104221	ProperStrand	1	chr7	47188533	47188623	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	1	-inf
chr1	14003885	14003975	LINE	Lx9	L1	chr1Lx914003771	ProperStrand	1	chr1	13808331	13808431	LTR	ETnERV-int	ERVK	chr1ETnERV-int13805297	NonProperStrand	1	1	-inf
chr4	72197440	72197530	LTR	MTA_Mm	MaLR	chr4MTA_Mm72197449	NonProperStrand	1	chr4	72197322	72197422	LTR	RMER15	ERVL	chr4RMER1572197251	ProperStrand	1	1	-inf
chr5	146261005	146261041	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	89141037	89141156	Simple_repeat	(TTCTC)n	Simple_repeat	chr4(TTCTC)n89141068	ProperStrand	1	1	-inf
chr3	69073194	69073301	Low_complexity	CT-rich	Low_complexity	chr3CT-rich69073205	NonProperStrand	1	chr3	69073140	69073171	SINE	PB1D10	Alu	chr3PB1D1069073099	NonProperStrand	1	1	-inf
chr9	58027366	58027466	LTR	MLT2F	ERVL	chr9MLT2F58027176	ProperStrand	1	chr9	58027062	58027152	SINE	ID4	ID	chr9ID458027056	ProperStrand	1	1	-inf
chr17	39847519	39847602	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	94487880	94487901	protein_coding	Tek	intron	ENSMUSG00000006386	ProperStrand	3	1	-4.3512
chr14	118968977	118969043	protein_coding	Abcc4	intron	ENSMUSG00000032849	NonProperStrand	14	chr6	9010306	9010328	protein_coding	Nxph1	intron	ENSMUSG00000046178	NonProperStrand	10	1	-18.4132
chr11	103949540	103949560	SINE	B4A	B4	chr11B4A103949470	ProperStrand	1	chr11	103951636	103951658	SINE	ID_B1	B4	chr11ID_B1103951493	ProperStrand	1	1	-inf
chr18	35120986	35121053	LTR	RMER16-int	ERVK	chr18RMER16-int35120940	ProperStrand	1	chr18	35120868	35120944	SINE	B1_Mus1	Alu	chr18B1_Mus135120794	ProperStrand	1	1	-inf
chr17	39846411	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	84627011	84627035	LTR	RMER17C	ERVK	chr2RMER17C84626984	NonProperStrand	1	1	-inf
chr10	31374238	31374315	LINE	L1MDa	L1	chr10L1MDa31374167	NonProperStrand	1	chr15	79796337	79796404	protein_coding	Cbx7	intron	ENSMUSG00000053411	ProperStrand	55	1	-inf
chr7	28813956	28813978	LTR	RMER19C	ERVK	chr7RMER19C28813816	ProperStrand	18	chr7	28820694	28821236	LTR	RMER19C	ERVK	chr7RMER19C28820055	ProperStrand	29	1	-15.9264
chr13	49540459	49540515	protein_coding	Ippk	intron	ENSMUSG00000021385	NonProperStrand	66	chr15	83326367	83326448	protein_coding	Ttll1	intron	ENSMUSG00000022442	ProperStrand	5	1	-16.9726
chr17	39843652	39843708	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	70578672	70578760	protein_coding	Zfp3	intron	ENSMUSG00000043602	ProperStrand	24	1	-4.2456
chr4	129822322	129822422	LTR	MTC	MaLR	chr4MTC129822113	NonProperStrand	2	chr4	129829847	129829937	SINE	B1_Mus1	Alu	chr4B1_Mus1129829801	ProperStrand	1	1	-inf
chr4	101083066	101083108	LTR	MERVL-int	ERVL	chr4MERVL-int101080890	NonProperStrand	8	chr4	101078269	101078328	lincRNA	Gm12798	intron	ENSMUSG00000084758	ProperStrand	9	1	-23.8657
chr17	39843589	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr16	10864776	10864859	protein_coding	A630055G03Rik	intron	ENSMUSG00000037991	ProperStrand	46	1	-3.0334
chr4	148101267	148101306	SINE	RSINE1	B4	chr4RSINE1148101210	ProperStrand	1	chr6	113882535	113882610	protein_coding	Atp2b2	intron	ENSMUSG00000030302	ProperStrand	88	1	-inf
chr17	39846583	39846823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	106919345	106919361	SINE	B1F2	Alu	chr5B1F2106919299	ProperStrand	2	1	-5.3533
chr1	127219585	127219675	LTR	IAPEz-int	ERVK	chr1IAPEz-int127213706	NonProperStrand	1	chr9	75767403	75767503	lincRNA	Gm16662	intron	ENSMUSG00000085159	ProperStrand	4	1	-inf
chr4	108818184	108819152	protein_coding	Osbpl9	intron	ENSMUSG00000028559	ProperStrand	19	chr9	78480025	78480094	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	2	-15.5763
chr19	32129693	32142844	LTR	RMER12	ERVK	chr19RMER1232141729	NonProperStrand	5	chr19	32142880	32142970	LTR	RMER12	ERVK	chr19RMER1232142754	NonProperStrand	1	1	-inf
chr1	67015700	67015726	LINE	L1Md_F	L1	chr1L1Md_F67012767	ProperStrand	3	chr1	44595247	44595328	LINE	Lx2	L1	chr1Lx244594400	ProperStrand	2	1	-20.2824
chr1	176743498	176743586	protein_coding	Fmn2	intron	ENSMUSG00000028354	NonProperStrand	16	chr11	113829910	113829967	protein_coding	Sdk2	intron	ENSMUSG00000041592	ProperStrand	144	2	-19.6393
chr1	132738917	132738959	protein_coding	Pigr	intron	ENSMUSG00000026417	NonProperStrand	52	chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.4010
chr2	163684175	163684275	protein_coding	Kcnk15	exon	ENSMUSG00000035238	ProperStrand	1	chr7	142030488	142030578	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-inf
chr1	168334233	168334279	protein_coding	Pogk	intron	ENSMUSG00000040596	ProperStrand	7	chr1	168423827	168423895	protein_coding	Gm4846	intron	ENSMUSG00000086056	ProperStrand	12	1	-20.2970
chr12	33038914	33042359	LINE	L1_Mus1	L1	chr12L1_Mus133040063	ProperStrand	2	chr15	85177751	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-16.7741
chr13	23698425	23698454	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	ProperStrand	11	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-12.6026
chr12	73551565	73551655	protein_coding	Lrrc9	intron	ENSMUSG00000021090	NonProperStrand	7	chr17	22585403	22585502	protein_coding	Zfp946	intron	ENSMUSG00000071266	ProperStrand	2	1	-21.4874
chr4	86985246	86985262	SINE	B3	B2	chr4B386985233	ProperStrand	10	chr6	118400082	118400183	protein_coding	Zfp248	intron	ENSMUSG00000030145	ProperStrand	20	1	-17.9669
chr17	39847227	39847266	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	20638529	20638546	SINE	RSINE1	B4	chr9RSINE120638446	ProperStrand	1	1	-inf
chr4	45346523	45346554	protein_coding	Exosc3	intron	ENSMUSG00000028322	ProperStrand	19	chr3	88624284	88624406	pseudogene	5830417I10Rik	.	ENSMUSG00000078684	ProperStrand	52	1	-14.6432
chr15	50747053	50747076	LINE	L1_Mur3	L1	chr15L1_Mur350746604	NonProperStrand	1	chr17	39847440	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	50930253	50930627	LINE	L1Md_F2	L1	chr14L1Md_F250929679	NonProperStrand	2	chr9	123462079	123462136	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr4	134515580	134515670	SINE	B2_Mm1a	B2	chr4B2_Mm1a134515509	NonProperStrand	4	chr4	134515680	134515780	SINE	B3	B2	chr4B3134515703	NonProperStrand	5	4	-inf
chr14	99056754	99060263	LINE	Lx3_Mus	L1	chr14Lx3_Mus99056418	NonProperStrand	2	chr14	99060257	99061026	LTR	RMER6C	ERVK	chr14RMER6C99060685	NonProperStrand	3	2	-inf
chr4	135858989	135859011	SINE	B1F1	Alu	chr4B1F1135858981	NonProperStrand	1	chr2	145763753	145763785	protein_coding	4930529M08Rik	intron	ENSMUSG00000037143	ProperStrand	37	1	-inf
chr17	39847165	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	25080257	25080298	protein_coding-noncoding	Zfp61	utr3	ENSMUSG00000050605	NonProperStrand	1	1	-inf
chr16	18808854	18810462	protein_coding	Cdc45	intron	ENSMUSG00000000028	ProperStrand	28	chr11	33152823	33154016	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-8.9743
chr6	148936273	148936373	SINE	B2_Mm2	B2	chr6B2_Mm2148936156	ProperStrand	1	chr6	148934239	148934329	Simple_repeat	(GAAA)n	Simple_repeat	chr6(GAAA)n148934250	NonProperStrand	1	1	-inf
chr9	123462117	123462145	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	52190328	52190380	protein_coding	Gm17175	intron	ENSMUSG00000091142	ProperStrand	1	1	-inf
chr11	82792171	82792190	LINE	Lx	L1	chr11Lx82791898	NonProperStrand	3	chr15	58455829	58455931	protein_coding	Fer1l6	intron	ENSMUSG00000037106	ProperStrand	38	1	-19.2637
chr17	56062847	56063374	LINE	L1Md_F	L1	chr17L1Md_F56062996	ProperStrand	4	chr17	39847513	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr7	4141993	4142058	LINE	L1Md_T	L1	chr7L1Md_T4137819	NonProperStrand	40	chr6	3201527	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-3.6332
chr1	79836948	79836975	protein_coding	Serpine2	intron	ENSMUSG00000026249	ProperStrand	41	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.6121
chr14	27148601	27148645	LTR	RMER17B	ERVK	chr14RMER17B27147969	ProperStrand	1	chr17	39847188	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	9952875	10042456	protein_coding	Taf3	intron	ENSMUSG00000025782	ProperStrand	59	chr2	10042487	10042577	protein_coding	Itih2	intron	ENSMUSG00000037254	ProperStrand	40	2	-inf
chr14	66913574	66913664	LTR	RLTR15	ERVK	chr14RLTR1566913418	NonProperStrand	2	chr14	66919402	66919502	protein_coding	Trim35	intron	ENSMUSG00000022043	ProperStrand	16	1	-inf
chr15	89050601	89050701	LINE	L1M4	L1	chr15L1M489050564	NonProperStrand	1	chr15	89050255	89050345	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n89050185	ProperStrand	1	1	-inf
chr8	72341041	72341131	protein_coding-noncoding	Gmip	utr5	ENSMUSG00000036246	ProperStrand	2	chr8	72341211	72341311	protein_coding	Gmip	exon	ENSMUSG00000036246	ProperStrand	5	2	-inf
chr13	53858724	53858741	LTR	MLT1A0	MaLR	chr13MLT1A053858662	NonProperStrand	3	chr9	123462033	123462164	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr3	40820011	40820111	Low_complexity	GA-rich	Low_complexity	chr3GA-rich40820023	ProperStrand	1	chr3	40819653	40819743	SINE	B1_Mm	Alu	chr3B1_Mm40819674	NonProperStrand	1	1	-inf
chr4	40213246	40213346	protein_coding	Topors	intron	ENSMUSG00000036822	ProperStrand	3	chr5	4029944	4029972	protein_coding	Akap9	exon	ENSMUSG00000040407	ProperStrand	53	2	-20.4760
chr17	39846579	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	117447668	117447726	LTR	MTE2b	MaLR	chr5MTE2b117447554	ProperStrand	1	1	-inf
chr2	121137310	121137367	protein_coding	Ppip5k1	utr3	ENSMUSG00000033526	NonProperStrand	22	chr5	24834963	24835053	protein_coding	Mll3	intron	ENSMUSG00000038056	ProperStrand	134	1	-12.4426
chr7	58413939	58414029	LTR	MT2A	ERVL	chr7MT2A58413934	NonProperStrand	1	chr7	58414323	58414423	SINE	B3	B2	chr7B358414235	ProperStrand	1	1	-inf
chr9	40804747	40804822	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr6	12313921	12313939	protein_coding	Thsd7a	intron	ENSMUSG00000032625	NonProperStrand	12	1	-10.7099
chr17	39847565	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	129842094	129842133	protein_coding-noncoding	Tinagl1	utr3	ENSMUSG00000028776	NonProperStrand	1	1	-inf
chr8	106048667	106050344	LINE	L1MB7	L1	chr8L1MB7106048546	NonProperStrand	2	chr17	39846352	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr11	6348673	6348780	LTR	RLTR10B	ERVK	chr11RLTR10B6348440	ProperStrand	1	chr17	39847844	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	106194419	106194448	LINE	Lx8	L1	chrXLx8106194372	NonProperStrand	35	chr8	18671856	18671967	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-7.9872
chr17	33323325	33323389	LINE	L1VL4	L1	chr17L1VL433323153	NonProperStrand	2	chr17	33322136	33322210	LINE	L1_Mus1	L1	chr17L1_Mus133320665	ProperStrand	1	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	10580636	10590511	LTR	MTB	MaLR	chr2MTB10590424	ProperStrand	9	3	-6.1520
chr17	39847174	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	9428345	9428361	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	13	2	-4.4697
chr17	39843491	39843517	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr15	80817788	80817874	protein_coding	Sgsm3	intron	ENSMUSG00000042303	ProperStrand	42	1	-3.1977
chrX	73692722	73692812	LINE	L1Md_T	L1	chrXL1Md_T73692609	NonProperStrand	3	chrX	19491500	19491600	LINE	L1_Mus2	L1	chrXL1_Mus219490764	ProperStrand	1	1	-inf
chr17	39845997	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	115813525	115813615	protein_coding	Sap30bp	intron	ENSMUSG00000020755	NonProperStrand	6	1	-6.3814
chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	3815878	3815895	processed_transcript	Gm16066	.	ENSMUSG00000082848	ProperStrand	2	1	-5.3533
chr8	91651754	91651790	SINE	PB1D9	Alu	chr8PB1D991651745	ProperStrand	1	chr16	37952098	37952192	protein_coding	Gpr156	intron	ENSMUSG00000046961	ProperStrand	3	1	-inf
chr13	23751525	23751553	LINE	Lx8	L1	chr13Lx823751469	NonProperStrand	4	chr19	37314022	37314079	SINE	B4A	B4	chr19B4A37313984	NonProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr5	140285389	140285415	protein_coding	Tmem184a	intron	ENSMUSG00000036687	ProperStrand	37	1	-7.5346
chr9	123461921	123461987	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	63196282	63196338	protein_coding	Ndufs1	intron	ENSMUSG00000025968	ProperStrand	3	1	-7.0114
chr16	87071623	87071713	LINE	L1Md_F2	L1	chr16L1Md_F287071135	ProperStrand	1	chr16	87071847	87071948	LINE	L1_Mur3	L1	chr16L1_Mur387071822	NonProperStrand	1	1	-inf
chr14	19804853	19804953	LTR	MTE2a	MaLR	chr14MTE2a19804862	ProperStrand	3	chr14	19804763	19804853	SINE	B1F	Alu	chr14B1F19804700	ProperStrand	2	2	-inf
chr7	112689722	112689820	LINE	L1Md_F2	L1	chr7L1Md_F2112689464	ProperStrand	7	chr7	112692670	112692699	LINE	L1_Mus2	L1	chr7L1_Mus2112692331	NonProperStrand	9	1	-20.6217
chr12	105615848	105616056	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int105615807	NonProperStrand	7	chr12	105615549	105615968	LTR	RLTR9E	ERVK	chr12RLTR9E105615389	NonProperStrand	3	3	-inf
chr7	11446163	11446263	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int11442084	NonProperStrand	1	chr7	30964025	30964115	protein_coding	Gm5113	utr3	ENSMUSG00000066647	ProperStrand	7	1	-inf
chr17	39846758	39846787	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	107553837	107553854	protein_coding	Csf1	utr5	ENSMUSG00000014599	NonProperStrand	3	1	-4.3017
chr11	12305655	12305696	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr9	56223908	56223960	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-5.5608
chr17	4082130	4082262	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr13	50021444	50021563	LTR	MMETn-int	ERVK	chr13MMETn-int50020307	NonProperStrand	15	14	-inf
chr14	18283606	18283646	LINE	L1Md_F2	L1	chr14L1Md_F218283541	ProperStrand	2	chr17	35848606	35848661	SINE	B1_Mur2	Alu	chr17B1_Mur235848568	ProperStrand	1	1	-inf
chr6	57121907	57121997	LINE	L1_Mur1	L1	chr6L1_Mur157119616	NonProperStrand	1	chr6	57122284	57122384	LTR	RLTR20D	ERVK	chr6RLTR20D57122080	NonProperStrand	1	1	-inf
chr9	4073181	4073281	LTR	IAPEY2_LTR	ERVK	chr9IAPEY2_LTR4072903	ProperStrand	1	chr9	4074096	4074186	LTR	IAPEY3-int	ERVK	chr9IAPEY3-int4074016	ProperStrand	1	1	-inf
chr17	39847222	39847283	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	34864413	34864486	protein_coding-noncoding	Arhgef4	utr5	ENSMUSG00000037509	ProperStrand	1	1	-inf
chr15	62066737	62066814	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr10	81051002	81051055	protein_coding	Tle2	intron	ENSMUSG00000034771	NonProperStrand	28	1	-7.7407
chr11	120594992	120595092	LTR	RMER20B	ERVK	chr11RMER20B120594961	NonProperStrand	5	chr11	120595085	120595275	SINE	B4	B4	chr11B4120595087	ProperStrand	4	4	-inf
chr2	173781978	173782068	Simple_repeat	(TA)n	Simple_repeat	chr2(TA)n173781969	ProperStrand	2	chr2	173782154	173782254	Simple_repeat	(TCCA)n	Simple_repeat	chr2(TCCA)n173782148	ProperStrand	2	2	-inf
chr19	44067797	44067832	Other	RMER1C	Other	chr19RMER1C44067804	NonProperStrand	1	chr2	59193165	59193255	protein_coding	Pkp4	utr3	ENSMUSG00000026991	ProperStrand	97	1	-inf
chr17	39846285	39846353	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	4197668	4197718	protein_coding	Gm8108	intron	ENSMUSG00000091563	ProperStrand	1	1	-inf
chr14	66987082	66987157	LINE	L1M2	L1	chr14L1M266986768	NonProperStrand	3	chr18	36787037	36787104	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	1	-18.2919
chr11	113673379	113673457	protein_coding	Sdk2	intron	ENSMUSG00000041592	ProperStrand	144	chr4	83291064	83291132	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-8.0133
chrX	150565081	150565154	LINE	Lx7	L1	chrXLx7150564453	ProperStrand	6	chr16	11209929	11209994	lincRNA	2610020C07Rik	intron	ENSMUSG00000091524	ProperStrand	17	2	-inf
chr17	39846750	39846769	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	117563048	117563160	protein_coding	Dph2	exon	ENSMUSG00000028540	NonProperStrand	2	1	-5.3533
chr7	27578970	27579070	LTR	RMER19B	ERVK	chr7RMER19B27578308	ProperStrand	1	chr7	27579291	27579381	LTR	RMER19C	ERVK	chr7RMER19C27579108	ProperStrand	1	1	-inf
chr13	95331481	95331577	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	55	chr3	122435185	122435212	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-9.5929
chr12	33333234	33333276	LINE	L1Md_F2	L1	chr12L1Md_F233327712	NonProperStrand	2	chr17	39846721	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr2	90978956	91017932	protein_coding-noncoding	Madd	utr3	ENSMUSG00000040687	NonProperStrand	4	chr2	90978831	91018431	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	4	-inf
chr9	110945889	110945927	LINE	Lx3C	L1	chr9Lx3C110945252	ProperStrand	16	chr13	44927283	44927356	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-11.5093
chr6	92635308	92635408	protein_coding	Prickle2	intron	ENSMUSG00000030020	NonProperStrand	15	chr6	92654701	92654791	protein_coding	Prickle2	intron	ENSMUSG00000030020	ProperStrand	72	1	-14.4807
chr1	4785208	4785308	LINE	Lx6	L1	chr1Lx64785213	NonProperStrand	3	chr1	4785356	4785446	SINE	B1_Mus1	Alu	chr1B1_Mus14785344	ProperStrand	3	3	-inf
chr5	146261131	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	125101899	125101932	protein_coding-noncoding	Iffo1	utr5	ENSMUSG00000038271	ProperStrand	8	1	-9.1415
chr10	31574415	31574515	LTR	ORR1B1	MaLR	chr10ORR1B131574274	NonProperStrand	1	chr5	149049744	149049834	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-inf
chr14	33967728	33967818	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	chr13	17388347	17388447	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	1	-11.0167
chr5	88587400	88587429	LINE	L1_Mm	L1	chr5L1_Mm88586694	ProperStrand	5	chr5	88585134	88585228	LINE	L1_Mur3	L1	chr5L1_Mur388583674	ProperStrand	7	1	-21.1751
chr17	39847330	39848078	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	146260992	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	230	-inf
chr8	70206594	70206682	LINE	L1VL2	L1	chr8L1VL270205209	NonProperStrand	1	chr8	70204294	70204349	LINE	Lx7	L1	chr8Lx770202590	ProperStrand	2	1	-inf
chr4	101574283	101574312	LTR	MYSERV16_I-int	ERVK	chr4MYSERV16_I-int101573769	NonProperStrand	1	chr4	101571172	101571255	LTR	ORR1A1	MaLR	chr4ORR1A1101570997	ProperStrand	1	1	-inf
chr17	39847655	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	137526595	137526629	SINE	ID_B1	B4	chr5ID_B1137526603	ProperStrand	1	1	-inf
chr15	38090606	38090706	LINE	Lx8	L1	chr15Lx838090560	NonProperStrand	3	chr12	20425803	20425893	protein_coding	Gm10479	intron	ENSMUSG00000073184	ProperStrand	4	2	-inf
chr18	65648712	65648837	LINE	L1M2	L1	chr18L1M265648748	ProperStrand	2	chr17	39846464	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	58251605	58251623	protein_coding	Tsc22d2	intron	ENSMUSG00000027806	NonProperStrand	5	1	-3.1907
chr17	39848098	39848124	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	57483407	57483423	protein_coding	Galnt10	intron	ENSMUSG00000020520	NonProperStrand	21	1	-3.2798
chr11	75313045	75313096	protein_coding	Prpf8	intron	ENSMUSG00000020850	NonProperStrand	28	chr3	9478030	9478064	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-8.0177
chr17	39847662	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	72598435	72598491	Other	RMER1B	Other	chr9RMER1B72598133	ProperStrand	3	2	-8.1061
chr7	34210900	34210993	LINE	L1_Mus3	L1	chr7L1_Mus334210568	NonProperStrand	1	chr7	34210666	34210690	LINE	L1_Mus3	L1	chr7L1_Mus334210568	ProperStrand	2	1	-inf
chr10	112175187	112175251	LINE	L1Md_F2	L1	chr10L1Md_F2112174383	ProperStrand	1	chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847575	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	115613796	115614176	SINE	B3	B2	chr5B3115614044	ProperStrand	4	1	-3.7035
chr17	22680473	22680540	LINE	L1Md_F2	L1	chr17L1Md_F222680480	ProperStrand	1	chr17	22679078	22679135	LINE	L1_Mur2	L1	chr17L1_Mur222678088	NonProperStrand	1	1	-inf
chr17	39847674	39847714	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	96134610	96134702	protein_coding	Hoxb9	intron	ENSMUSG00000020875	NonProperStrand	1	1	-inf
chr8	4524037	4524075	protein_coding	Lass4	utr3	ENSMUSG00000008206	ProperStrand	11	chr11	119678389	119678422	protein_coding	Rptor	exon	ENSMUSG00000025583	ProperStrand	231	1	-12.7845
chr10	80287663	80287763	SINE	B1_Mur4	Alu	chr10B1_Mur480287650	NonProperStrand	2	chr10	80287562	80287652	SINE	B3	B2	chr10B380287528	NonProperStrand	2	2	-inf
chr18	90535044	90535130	LINE	L1Md_F2	L1	chr18L1Md_F290530529	NonProperStrand	6	chr17	39847277	39847323	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.9545
chrX	97376637	97376705	protein_coding	Eda	intron	ENSMUSG00000059327	NonProperStrand	44	chrX	102336764	102336795	pseudogene	Gm6292	.	ENSMUSG00000082245	NonProperStrand	1	1	-inf
chr17	47154421	47154511	LTR	MYSERV-int	ERVK	chr17MYSERV-int47153986	NonProperStrand	4	chr17	47154509	47154609	SINE	B2_Mm1t	B2	chr17B2_Mm1t47154509	ProperStrand	1	1	-inf
chr5	146261164	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	79035824	79035871	antisense	Gm10863	.	ENSMUSG00000075555	ProperStrand	40	1	-5.8562
chr2	157913142	157913219	protein_coding	Rprd1b	intron	ENSMUSG00000027651	NonProperStrand	14	chr2	157929127	157929172	protein_coding	Rprd1b	intron	ENSMUSG00000027651	ProperStrand	72	1	-14.6197
chr2	154436554	154500419	SINE	B1_Mur1	Alu	chr2B1_Mur1154436542	ProperStrand	1	chr2	154500419	154500455	protein_coding	Chmp4b	intron	ENSMUSG00000038467	ProperStrand	81	1	-inf
chr17	26081283	26081334	lincRNA	Gm17480	intron	ENSMUSG00000091321	ProperStrand	9	chr16	38547203	38547263	protein_coding	Poglut1	intron	ENSMUSG00000034064	ProperStrand	24	1	-17.7826
chr5	115251198	115251319	protein_coding	Ankrd13a	intron	ENSMUSG00000041870	NonProperStrand	64	chr13	97190561	97190591	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.9972
chr8	39100420	39100486	protein_coding	Sgcz	intron	ENSMUSG00000039539	NonProperStrand	40	chr8	124028411	124028463	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-7.7420
chr2	84493894	84493984	SINE	B1_Mus1	Alu	chr2B1_Mus184493902	NonProperStrand	1	chr2	125128393	125128493	protein_coding	Fbn1	intron	ENSMUSG00000027204	NonProperStrand	28	1	-inf
chr9	67501640	67501740	SINE	B1_Mur3	Alu	chr9B1_Mur367501596	NonProperStrand	2	chr9	67501737	67501827	SINE	B3	B2	chr9B367501738	NonProperStrand	2	2	-inf
chr10	39502228	39502306	protein_coding	Rev3l	intron	ENSMUSG00000019841	NonProperStrand	9	chr5	123732507	123732568	protein_coding	Wdr66	intron	ENSMUSG00000029442	NonProperStrand	48	1	-16.3479
chr17	70984767	70984871	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr12	85029730	85029772	protein_coding	Psen1	utr5	ENSMUSG00000019969	ProperStrand	26	2	-16.0123
chr5	79769507	79769524	LINE	Lx	L1	chr5Lx79768862	NonProperStrand	1	chr16	87487564	87487652	protein_coding	Cct8	intron	ENSMUSG00000025613	ProperStrand	46	1	-inf
chr8	104349599	104349621	LINE	L1Md_F2	L1	chr8L1Md_F2104349237	ProperStrand	3	chr8	104351571	104351646	LINE	Lx2B	L1	chr8Lx2B104351502	NonProperStrand	1	1	-inf
chr17	39847767	39847786	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	76023597	76023626	LTR	ORR1D1	MaLR	chr7ORR1D176023599	NonProperStrand	1	1	-inf
chr7	141448759	141451100	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	188	chr7	141447990	141451047	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	134	3	-18.1127
chr14	121167882	121167972	LINE	Lx2B	L1	chr14Lx2B121167869	NonProperStrand	7	chr14	121167966	121168066	LTR	RLTR9E	ERVK	chr14RLTR9E121167951	NonProperStrand	7	7	-inf
chr6	148926103	148928541	LINE	Lx9	L1	chr6Lx9148926064	ProperStrand	2	chr6	148930570	148930599	SINE	B4A	B4	chr6B4A148930562	ProperStrand	6	1	-inf
chr17	39843936	39844025	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr1	58016614	58016656	protein_coding	Kctd18	intron	ENSMUSG00000054770	NonProperStrand	14	1	-6.8501
chr2	90723430	90723694	LTR	RMER19C	ERVK	chr2RMER19C90723509	NonProperStrand	3	chr2	90722088	90723424	SINE	B3A	B2	chr2B3A90723101	ProperStrand	2	2	-inf
chr19	47614144	47614257	SINE	B1_Mus2	Alu	chr19B1_Mus247614100	ProperStrand	1	chr14	18759099	18759134	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	1	-inf
chr11	97956881	97956967	protein_coding-noncoding	Fbxl20	utr3	ENSMUSG00000020883	ProperStrand	3	chr11	97978071	97978147	protein_coding	Fbxl20	intron	ENSMUSG00000020883	ProperStrand	47	1	-18.8988
chr6	149176528	149176627	LTR	MERVL-int	ERVL	chr6MERVL-int149174545	ProperStrand	3	chr2	32634134	32634151	protein_coding	1700019L03Rik	intron	ENSMUSG00000038987	ProperStrand	1	1	-inf
chr9	123461858	123461879	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr19	21719597	21719644	protein_coding	1110059E24Rik	intron	ENSMUSG00000035171	NonProperStrand	12	1	-4.0248
chr6	3201465	3201539	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	125023744	125024111	protein_coding	Lpar5	intron	ENSMUSG00000067714	ProperStrand	6	1	-7.4430
chr1	132991498	132991532	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	chr12	54696857	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-8.3071
chr9	40389803	40389887	LINE	Lx9	L1	chr9Lx940389670	ProperStrand	4	chr17	39846759	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr7	131578195	131578268	LINE	L1_Mus4	L1	chr7L1_Mus4131577556	NonProperStrand	3	chr7	131577018	131577085	LINE	Lx8	L1	chr7Lx8131576847	ProperStrand	1	1	-inf
chr17	36180618	36180638	antisense	BC023719	.	ENSMUSG00000092365	ProperStrand	3	chr16	72664428	72664570	protein_coding	Robo1	intron	ENSMUSG00000022883	ProperStrand	177	2	-20.3850
chr2	19513680	19513780	LTR	ORR1E	MaLR	chr2ORR1E19513553	ProperStrand	1	chr2	19514154	19514244	SINE	B4A	B4	chr2B4A19514103	ProperStrand	1	1	-inf
chr6	113151201	113151233	LINE	L1Md_F2	L1	chr6L1Md_F2113150265	ProperStrand	2	chr9	123461934	123461976	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chrX	101443480	101444336	DNA	Charlie1a	MER1_type	chrXCharlie1a101443652	NonProperStrand	1	chr1	92841346	92841391	protein_coding	Mlph	intron	ENSMUSG00000026303	ProperStrand	33	1	-inf
chr6	3201425	3201515	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	132090465	132090565	protein_coding	Cds2	intron	ENSMUSG00000058793	NonProperStrand	40	1	-3.6332
chr17	39846405	39846451	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	65868574	65868632	LTR	MTB	MaLR	chr7MTB65868522	ProperStrand	1	1	-inf
chr11	116757692	116757748	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr6	52570920	52570986	protein_coding	Hibadh	intron	ENSMUSG00000029776	ProperStrand	66	1	-12.4566
chr14	50998770	50998791	LINE	Lx7	L1	chr14Lx750998370	NonProperStrand	1	chr17	39848721	39848801	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chr17	39846759	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	64231017	64231082	SINE	ID_B1	B4	chr9ID_B164230889	NonProperStrand	1	1	-inf
chr1	183125393	183125426	protein_coding	Wdr26	intron	ENSMUSG00000038733	ProperStrand	36	chr2	164425950	164426005	protein_coding	Wfdc8	intron	ENSMUSG00000070533	ProperStrand	51	1	-13.3848
chr15	59450011	59450050	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n59450005	ProperStrand	1	chr15	59418451	59418513	protein_coding	Nsmce2	intron	ENSMUSG00000059586	ProperStrand	74	1	-inf
chrX	60229206	60229296	LINE	L1Md_A	L1	chrXL1Md_A60228240	ProperStrand	2	chrX	60229351	60229451	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int60229281	ProperStrand	2	2	-inf
chr13	37241058	37241158	DNA	Tigger6a	MER2_type	chr13Tigger6a37241042	NonProperStrand	1	chr13	37241553	37241643	SINE	B1F	Alu	chr13B1F37241567	NonProperStrand	1	1	-inf
chr11	93959270	93959328	protein_coding	Spag9	intron	ENSMUSG00000020859	NonProperStrand	74	chr7	133013084	133013138	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	1	-8.4334
chr18	60953929	60954019	SINE	B1_Mm	Alu	chr18B1_Mm60953948	NonProperStrand	1	chr18	60953774	60953874	SINE	B2_Mm2	B2	chr18B2_Mm260953754	ProperStrand	1	1	-inf
chr13	21716395	21716495	LINE	Lx7	L1	chr13Lx721715740	ProperStrand	9	chr1	16131386	16131476	LINE	L1ME5	L1	chr1L1ME516131034	ProperStrand	1	1	-inf
chr10	40258619	40258677	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	83298487	83298841	protein_coding	Taf15	exon	ENSMUSG00000020680	NonProperStrand	2	1	-12.7698
chr13	86045785	86046660	LINE	L1MA4	L1	chr13L1MA486045619	NonProperStrand	3	chr17	39847442	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-8.1061
chr12	40440597	40440687	LINE	Lx7	L1	chr12Lx740440588	ProperStrand	1	chr12	40440410	40440510	LINE	Lx9	L1	chr12Lx940440144	NonProperStrand	1	1	-inf
chr2	156648655	156648745	LTR	ORR1A1-int	MaLR	chr2ORR1A1-int156647413	NonProperStrand	5	chr2	156648858	156648958	SINE	B1_Mus2	Alu	chr2B1_Mus2156648887	ProperStrand	2	2	-inf
chr5	146261116	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	131106119	131106137	protein_coding	Btk	intron	ENSMUSG00000031264	ProperStrand	7	1	-9.4279
chr17	39846759	39846813	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	92926127	92926176	protein_coding	Zc3h12b	intron	ENSMUSG00000035045	ProperStrand	5	1	-3.1907
chr5	144590452	144590530	protein_coding	Eif2ak1	intron	ENSMUSG00000029613	ProperStrand	1	chr13	44869609	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr18	46766424	46766524	protein_coding	Eif1a	intron	ENSMUSG00000057561	ProperStrand	4	chr13	67707165	67707255	protein_coding	AA987161	intron	ENSMUSG00000058093	NonProperStrand	2	1	-20.9262
chr15	72757300	72903598	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	chr15	72903649	72925563	protein_coding	Chrac1	intron	ENSMUSG00000068391	NonProperStrand	9	3	-inf
chr15	97825260	97825277	protein_coding	Col2a1	intron	ENSMUSG00000022483	ProperStrand	3	chr9	78479027	78479096	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-13.8660
chr9	69131228	69131328	protein_coding	Rora	intron	ENSMUSG00000032238	NonProperStrand	32	chr9	69002043	69002133	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-10.8569
chr17	28432383	28432473	protein_coding-noncoding	Ppard	utr5	ENSMUSG00000002250	NonProperStrand	2	chr17	28432253	28432353	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	1	-18.4181
chr8	70014242	70014266	Simple_repeat	(TC)n	Simple_repeat	chr8(TC)n70014228	NonProperStrand	1	chr8	70015032	70015115	protein_coding	Nat1	exon	ENSMUSG00000025588	NonProperStrand	2	1	-inf
chr17	39846576	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	83692477	83692536	protein_coding	Fam171b	intron	ENSMUSG00000048388	NonProperStrand	5	1	-3.1907
chr11	109011787	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	33599901	33599952	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	2	-7.3876
chr10	82955332	82955360	protein_coding	Aldh1l2	exon	ENSMUSG00000020256	ProperStrand	30	chr15	8358806	8358824	protein_coding	Nipbl	intron	ENSMUSG00000022141	NonProperStrand	21	1	-15.5525
chr1	72361403	72361440	protein_coding	Xrcc5	intron	ENSMUSG00000026187	ProperStrand	76	chrX	71302506	71302533	protein_coding	Mecp2	intron	ENSMUSG00000031393	NonProperStrand	9	1	-15.4533
chr11	68907470	68907490	SINE	B1_Mus2	Alu	chr11B1_Mus268907474	ProperStrand	1	chr9	59669027	59669057	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	39012055	39012112	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	1	-7.6572
chr17	39845495	39845625	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr13	32820308	32820325	protein_coding	Mylk4	intron	ENSMUSG00000044951	NonProperStrand	20	2	-7.1376
chr17	39846750	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	150574348	150574389	LTR	MTE2b	MaLR	chr5MTE2b150574028	NonProperStrand	1	1	-inf
chr17	66119070	66119087	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	chr8	61116606	61116690	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-9.2905
mmu-miR-1187	1	22	miRNA	mmu-miR-1187	.	mmu-miR-1187	ProperStrand	3	chr14	10873984	10874119	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	48	1	-18.5873
chr5	74093616	74093642	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	7	chr5	148526694	148526773	protein_coding	Flt1	intron	ENSMUSG00000029648	ProperStrand	93	1	-15.5762
chr15	74208429	74208519	LINE	L1MA6	L1	chr15L1MA674208101	ProperStrand	1	chr15	74208749	74208849	LTR	MTEb	MaLR	chr15MTEb74208731	ProperStrand	1	1	-inf
chr7	16356704	16356804	LINE	Lx2B	L1	chr7Lx2B16355905	NonProperStrand	7	chr16	32300051	32300141	protein_coding	Rnf168	utr3	ENSMUSG00000014074	NonProperStrand	1	1	-inf
chr9	15497748	15497768	LINE	Lx7	L1	chr9Lx715496731	ProperStrand	4	chr17	39846453	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-5.5459
chr2	37452919	37452969	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	chr2	76410122	76410183	protein_coding	Osbpl6	intron	ENSMUSG00000042359	ProperStrand	35	1	-12.5076
chr3	153911630	153911691	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr10	127341831	127341882	protein_coding	Sdr9c7	intron	ENSMUSG00000040127	NonProperStrand	24	1	-10.7186
chr11	87426796	87426886	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr2	121797568	121797668	protein_coding	Ctdspl2	intron	ENSMUSG00000033411	NonProperStrand	29	1	-13.2999
chr11	19616444	19616544	SINE	B1_Mur1	Alu	chr11B1_Mur119616452	ProperStrand	1	chr11	19616254	19616344	SINE	B3	B2	chr11B319616225	ProperStrand	1	1	-inf
chr15	9198584	9198684	LINE	L1_Mus3	L1	chr15L1_Mus39198461	ProperStrand	5	chr15	7194970	7195060	protein_coding	Egflam	intron	ENSMUSG00000042961	NonProperStrand	61	2	-inf
chr2	31081737	31081963	SINE	B4A	B4	chr2B4A31081672	ProperStrand	3	chr2	31066958	31072214	protein_coding	Gpr107	intron	ENSMUSG00000000194	NonProperStrand	164	3	-inf
chr6	94678735	94678847	SINE	RSINE1	B4	chr6RSINE194678758	ProperStrand	1	chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-inf
chr12	80242657	80242719	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr6	128003578	128003650	protein_coding	Tspan9	intron	ENSMUSG00000030352	ProperStrand	182	1	-7.6583
chr12	67667637	67667726	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr7	82893308	82893408	protein_coding	Akap13	intron	ENSMUSG00000066406	ProperStrand	108	1	-10.2633
chr16	35771688	35771769	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	chr2	75906975	75907021	protein_coding	Pde11a	intron	ENSMUSG00000075270	NonProperStrand	79	1	-9.1589
chr1	98080053	98080153	LINE	Lx2A	L1	chr1Lx2A98079828	NonProperStrand	1	chr1	98080170	98080260	LTR	RLTR40	ERVK	chr1RLTR4098080164	ProperStrand	1	1	-inf
chr12	102630023	102630123	LINE	L1M2	L1	chr12L1M2102629474	NonProperStrand	9	chr12	102628738	102628828	LINE	Lx4B	L1	chr12Lx4B102627938	NonProperStrand	4	1	-inf
chr4	85624910	85625010	LTR	MLT1D	MaLR	chr4MLT1D85624896	NonProperStrand	1	chr4	85624814	85624904	SINE	B1_Mus2	Alu	chr4B1_Mus285624750	NonProperStrand	1	1	-inf
chr2	5379296	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr15	81951256	81951357	protein_coding	Mei1	intron	ENSMUSG00000068117	NonProperStrand	96	1	-3.6625
chr6	5154318	5154356	LTR	MT2B	ERVL	chr6MT2B5153965	ProperStrand	1	chr6	5154449	5154526	SINE	B4A	B4	chr6B4A5154442	NonProperStrand	1	1	-inf
chr1	122357173	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr1	136364891	136364943	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-7.2766
chr7	97099047	97099111	LTR	IAPLTR3	ERVK	chr7IAPLTR397099030	ProperStrand	1	chr15	10701606	10701688	lincRNA	4930556M19Rik	intron	ENSMUSG00000092044	NonProperStrand	161	1	-inf
chr8	124931657	124931726	protein_coding	Zc3h18	intron	ENSMUSG00000017478	NonProperStrand	139	chr14	32313491	32313516	protein_coding	Eaf1	intron	ENSMUSG00000021890	NonProperStrand	5	1	-15.5178
chr5	7843990	7844090	LINE	L1Md_F2	L1	chr5L1Md_F27843436	ProperStrand	1	chr14	33967652	33967742	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr17	39843416	39843474	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	133967839	133967907	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	1	-3.3329
chr10	40258543	40258565	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr1	158078927	158078959	protein_coding	Fam163a	intron	ENSMUSG00000015484	ProperStrand	4	1	-10.9810
chr17	62450780	62450880	DNA	RCHARR1	MER1_type	chr17RCHARR162450802	NonProperStrand	1	chr17	62450579	62450669	LINE	Lx6	L1	chr17Lx662450173	NonProperStrand	1	1	-inf
chr14	57074843	57074860	protein_coding	Rnf17	intron	ENSMUSG00000000365	NonProperStrand	5	chr6	97841298	97841344	protein_coding	Mitf	intron	ENSMUSG00000035158	ProperStrand	50	1	-17.6459
chr7	19356325	19356386	LINE	L1_Mus1	L1	chr7L1_Mus119355869	ProperStrand	8	chr7	19355058	19355112	LTR	MT2_Mm	ERVL	chr7MT2_Mm19354914	ProperStrand	1	1	-inf
chr16	49540003	49540093	LINE	L1_Mus4	L1	chr16L1_Mus449538562	ProperStrand	1	chr16	34813635	34813735	protein_coding	Mylk	intron	ENSMUSG00000022836	ProperStrand	25	1	-inf
chr6	124932438	124932528	SINE	B1_Mur4	Alu	chr6B1_Mur4124932373	ProperStrand	9	chr6	124932535	124932635	SINE	B1_Mus1	Alu	chr6B1_Mus1124932562	ProperStrand	9	1	-20.8260
chr6	4760276	4760376	lincRNA	RP23-353M17.3	exon	ENSMUSG00000093570	NonProperStrand	55	chr5	64666192	64666282	protein_coding	Tbc1d1	intron	ENSMUSG00000029174	NonProperStrand	17	1	-14.7608
chr13	102769145	102769182	LTR	MTE-int	MaLR	chr13MTE-int102768051	NonProperStrand	2	chr19	5844186	5844233	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	1	-16.8069
chr3	95663045	95663132	lincRNA	Gm16884	intron	ENSMUSG00000087673	ProperStrand	40	chr7	109520119	109520180	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-10.6584
chr1	72178219	72178273	LTR	IAPEz-int	ERVK	chr1IAPEz-int72172467	ProperStrand	26	chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.1854
chr1	40003649	40003733	protein_coding	Map4k4	intron	ENSMUSG00000026074	ProperStrand	105	chr9	118674951	118674991	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.8809
chr11	109434405	109434455	protein_coding	Arsg	utr3	ENSMUSG00000020604	ProperStrand	62	chr11	109435448	109435503	protein_coding	Wipi1	intron	ENSMUSG00000041895	NonProperStrand	10	1	-15.6400
chr19	15905661	15905761	LINE	L1MA5	L1	chr19L1MA515905636	ProperStrand	2	chr19	15905807	15905897	LTR	ORR1C1	MaLR	chr19ORR1C115905737	NonProperStrand	13	1	-inf
chr1	74362616	74362650	protein_coding	Pnkd	intron	ENSMUSG00000026179	ProperStrand	15	chr9	64174883	64174960	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-11.7606
chrX	153393105	153394498	LINE	L1MCb	L1	chrXL1MCb153393312	ProperStrand	1	chrX	153394513	153394613	LINE	L1MCb	L1	chrXL1MCb153394406	ProperStrand	1	1	-inf
chr9	31033160	31033245	LTR	MTD	MaLR	chr9MTD31033090	NonProperStrand	1	chr9	31032963	31032988	SINE	MIRb	MIR	chr9MIRb31032965	NonProperStrand	1	1	-inf
chr9	59666292	59666322	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr16	34549627	34549647	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-3.5301
chr6	149498949	149499039	protein_coding	Bicd1	intron	ENSMUSG00000003452	ProperStrand	16	chr5	44966812	44966912	protein_coding	Ldb2	intron	ENSMUSG00000039706	ProperStrand	20	2	-inf
chr6	124686256	124686341	processed_transcript	Gm20531	.	ENSMUSG00000092482	ProperStrand	7	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.8338
chr6	29160161	29164552	protein_coding	Impdh1	intron	ENSMUSG00000003500	ProperStrand	15	chr4	134124359	134124399	protein_coding	Man1c1	intron	ENSMUSG00000037306	NonProperStrand	14	1	-17.7899
chr11	98028464	98029485	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	chr18	42294181	42294242	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	ProperStrand	23	1	-12.6232
chr1	150419988	150421733	LTR	MER74C	ERVL	chr1MER74C150421520	NonProperStrand	7	chr4	138332845	138332864	protein_coding	Pla2g2d	intron	ENSMUSG00000041202	ProperStrand	3	1	-inf
chr17	39847562	39847638	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	144344290	144345651	SINE	B1F1	Alu	chrXB1F1144344241	ProperStrand	1	1	-inf
chr5	146260993	146261022	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	74712021	74712040	SINE	B3	B2	chrXB374711955	ProperStrand	1	1	-inf
chr9	78573877	78573933	LINE	L1MB3	L1	chr9L1MB378573824	ProperStrand	1	chr17	39845962	39846001	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr11	69667833	69667930	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-5.9264
chr17	70963679	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr18	34946560	34946604	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-5.5239
chr2	59727204	59727248	Simple_repeat	(T)n	Simple_repeat	chr2(T)n59727214	ProperStrand	2	chr2	59741293	59741347	protein_coding	Baz2b	exon	ENSMUSG00000026987	NonProperStrand	156	2	-inf
chr12	19684362	19684438	LTR	RLTR6-int	ERV1	chr12RLTR6-int19681937	NonProperStrand	2	chr3	138530613	138530685	protein_coding	Tspan5	intron	ENSMUSG00000028152	ProperStrand	84	1	-18.6719
chr17	39847244	39847334	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	36617551	36617651	lincRNA	D430040D24Rik	intron	ENSMUSG00000087589	NonProperStrand	3	1	-5.4882
chr14	69719850	69720945	SINE	B3	B2	chr14B369720110	NonProperStrand	1	chr14	69719494	69719779	Simple_repeat	(TG)n	Simple_repeat	chr14(TG)n69719751	NonProperStrand	1	1	-inf
chr4	132553064	132553187	protein_coding	Fgr	exon	ENSMUSG00000028874	ProperStrand	28	chr13	44869573	44869611	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.9804
chr5	127598797	127598819	LINE	L1Md_A	L1	chr5L1Md_A127598262	ProperStrand	1	chr5	127599134	127599169	LINE	L1_Mm	L1	chr5L1_Mm127598966	NonProperStrand	4	1	-inf
chr14	66091427	66091448	LTR	ORR1A2	MaLR	chr14ORR1A266091258	NonProperStrand	1	chr17	39847846	39847877	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	5110738	5110760	LINE	L1Md_T	L1	chr7L1Md_T5104752	NonProperStrand	3	chr17	39847183	39847322	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr11	94988678	94988743	Low_complexity	GA-rich	Low_complexity	chr11GA-rich94988681	NonProperStrand	1	chr11	94988607	94988679	SINE	ID4_	ID	chr11ID4_94988607	NonProperStrand	1	1	-inf
chr7	132753129	132753150	protein_coding	Il21r	intron	ENSMUSG00000030745	NonProperStrand	38	chr7	132720091	132720217	protein_coding	Il4ra	exon	ENSMUSG00000030748	NonProperStrand	12	2	-inf
chr19	51142788	51142815	LINE	Lx3_Mus	L1	chr19Lx3_Mus51141674	ProperStrand	11	chr16	36775653	36775670	protein_coding	Slc15a2	intron	ENSMUSG00000022899	ProperStrand	16	1	-18.3136
chr7	100629851	100629914	LINE	Lx7	L1	chr7Lx7100629435	ProperStrand	10	chr17	39843589	39843639	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-5.9887
chr18	60828364	60828454	LTR	MLT2C1	ERVL	chr18MLT2C160828356	ProperStrand	7	chr18	60822957	60827406	Simple_repeat	(TG)n	Simple_repeat	chr18(TG)n60823210	NonProperStrand	4	4	-inf
chrX	48491275	48491367	protein_coding	Mbnl3	intron	ENSMUSG00000036109	ProperStrand	30	chr13	44869608	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.8435
chr5	33511277	33511357	LINE	L1MC3	L1	chr5L1MC333510876	NonProperStrand	69	chr5	121503690	121503760	SINE	B1_Mur4	Alu	chr5B1_Mur4121503637	ProperStrand	1	1	-inf
chr15	53748360	53748406	LTR	MLT1F	MaLR	chr15MLT1F53748291	ProperStrand	1	chr17	39847958	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	3201470	3201547	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	30626166	30626184	protein_coding	Zfp940	intron	ENSMUSG00000050855	ProperStrand	13	1	-5.8236
chr10	34198207	34198298	LINE	Lx	L1	chr10Lx34194351	ProperStrand	6	chr11	16754830	16754848	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	1	-19.2656
chr2	153361627	153361710	LINE	L2a	L2	chr2L2a153361554	ProperStrand	1	chr2	153380177	153380213	SINE	ID_B1	B4	chr2ID_B1153380108	ProperStrand	3	1	-inf
chr10	75006192	75006282	SINE	B1_Mm	Alu	chr10B1_Mm75006165	ProperStrand	3	chr10	75006349	75006449	SINE	B2_Mm2	B2	chr10B2_Mm275006376	ProperStrand	3	3	-inf
chr5	59016995	59017095	LINE	Lx2B	L1	chr5Lx2B59016868	ProperStrand	1	chr5	59017285	59017375	LINE	Lx2B	L1	chr5Lx2B59017225	NonProperStrand	1	1	-inf
chr11	107359227	107359294	protein_coding	Psmd12	utr3	ENSMUSG00000020720	NonProperStrand	27	chr13	112578192	112578269	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-5.7573
chr9	78446410	78446510	LTR	MTA_Mm	MaLR	chr9MTA_Mm78446201	ProperStrand	1	chr9	78446134	78446224	SINE	B1_Mur1	Alu	chr9B1_Mur178446078	ProperStrand	1	1	-inf
chr1	33460670	33460770	LINE	L1M4b	L1	chr1L1M4b33460233	ProperStrand	2	chr1	33460773	33460863	LINE	L1Md_F2	L1	chr1L1Md_F233460790	ProperStrand	2	1	-19.8939
chr17	39847172	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	21150498	21152487	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n21152417	NonProperStrand	1	1	-inf
chr17	39847173	39847219	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	47511585	47511621	protein_coding-noncoding	Mrps10	utr5	ENSMUSG00000034729	NonProperStrand	1	1	-inf
chr15	25763279	25763327	Simple_repeat	(GGA)n	Simple_repeat	chr15(GGA)n25763252	ProperStrand	1	chr4	141705683	141705741	protein_coding	Kazn	intron	ENSMUSG00000040606	ProperStrand	60	1	-inf
chr17	39846588	39846651	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	125986240	125986256	protein_coding	Def8	utr3	ENSMUSG00000001482	NonProperStrand	1	1	-inf
chr11	75321453	75321543	protein_coding	Prpf8	intron	ENSMUSG00000020850	NonProperStrand	28	chr11	75324790	75324890	protein_coding	Rilp	exon	ENSMUSG00000038195	NonProperStrand	1	1	-inf
chr4	139649460	139649574	protein_coding	Igsf21	intron	ENSMUSG00000040972	NonProperStrand	62	chrX	104370692	104370717	pseudogene	Gm14834	.	ENSMUSG00000082630	ProperStrand	1	1	-inf
chr4	123370244	123370315	SINE	B1_Mus1	Alu	chr4B1_Mus1123370167	ProperStrand	1	chr15	99339546	99339603	protein_coding	Faim2	intron	ENSMUSG00000023011	ProperStrand	19	1	-inf
chr2	5825669	5825759	protein_coding	Dhtkd1	intron	ENSMUSG00000025815	NonProperStrand	42	chr2	5838077	5838177	protein_coding	Dhtkd1	intron	ENSMUSG00000025815	ProperStrand	28	1	-14.2879
chr7	143287733	143287790	Simple_repeat	(CAGAGA)n	Simple_repeat	chr7(CAGAGA)n143287735	NonProperStrand	1	chr4	108178753	108178816	protein_coding	Zcchc11	intron	ENSMUSG00000034610	NonProperStrand	31	1	-inf
chr7	143255121	143255150	Simple_repeat	(CAAAC)n	Simple_repeat	chr7(CAAAC)n143255096	NonProperStrand	1	chr10	111497390	111497429	protein_coding	Glipr1l1	exon	ENSMUSG00000020213	ProperStrand	8	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	64295928	64296030	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-5.3460
chr17	35885685	35885953	lincRNA	Gm20442	intron	ENSMUSG00000092600	NonProperStrand	38	chr15	89188405	89188428	protein_coding	Ncaph2	intron	ENSMUSG00000008690	NonProperStrand	5	1	-18.2258
chr7	84119676	84119759	SINE	B2_Mm2	B2	chr7B2_Mm284119686	ProperStrand	1	chr18	39006312	39006385	protein_coding	Arhgap26	intron	ENSMUSG00000036452	ProperStrand	171	1	-inf
chr6	125480781	125480862	LINE	L1MC3	L1	chr6L1MC3125480534	ProperStrand	3	chr6	3201354	3201427	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-9.0398
chr4	150897185	150897325	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr9	99358336	99358352	protein_coding	1600029I14Rik	intron	ENSMUSG00000046242	NonProperStrand	4	1	-15.0582
chr2	129133427	129133517	lincRNA	Gm14023	exon	ENSMUSG00000085498	ProperStrand	20	chr2	129133532	129133632	protein_coding	Il1a	intron	ENSMUSG00000027399	NonProperStrand	5	2	-inf
chr11	115417995	115418063	SINE	B1_Mus2	Alu	chr11B1_Mus2115417906	ProperStrand	1	chr11	115418096	115418172	SINE	B3A	B2	chr11B3A115418075	ProperStrand	1	1	-inf
chr17	39847575	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	96422739	96422840	protein_coding	Lix1l	intron	ENSMUSG00000049288	ProperStrand	3	1	-4.3512
chr13	104830938	104831029	protein_coding	Nln	intron	ENSMUSG00000021710	NonProperStrand	18	chr9	109881546	109881567	protein_coding	Mtap4	exon	ENSMUSG00000032479	ProperStrand	91	1	-13.6317
chr5	146261180	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr12	76822206	76822222	protein_coding	Sgpp1	intron	ENSMUSG00000021054	NonProperStrand	17	1	-7.5728
chr17	39846579	39846646	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	86683781	86683838	SINE	B3	B2	chr11B386683770	NonProperStrand	1	1	-inf
chr16	47057473	47057490	LTR	MLT1D	MaLR	chr16MLT1D47057343	NonProperStrand	16	chr7	130542964	130543041	protein_coding	Lcmt1	intron	ENSMUSG00000030763	NonProperStrand	20	1	-16.9635
chr4	127021796	127021896	DNA	Kanga2_a	Tc2	chr4Kanga2_a127021765	NonProperStrand	14	chr4	127021697	127021787	SINE	B1_Mus1	Alu	chr4B1_Mus1127021617	NonProperStrand	3	1	-20.8283
chr1	179029608	179029737	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr3	83929915	83929939	protein_coding	Mnd1	intron	ENSMUSG00000033752	ProperStrand	41	1	-9.5786
chr5	118738466	118738815	LINE	Lx2	L1	chr5Lx2118738458	ProperStrand	4	chr5	118738827	118738927	SINE	B1_Mus1	Alu	chr5B1_Mus1118738762	ProperStrand	4	4	-inf
chr8	81143464	81143554	protein_coding	Slc10a7	intron	ENSMUSG00000031684	ProperStrand	5	chr8	81032598	81032698	protein_coding	Rbmxl1	utr5	ENSMUSG00000037070	ProperStrand	1	1	-inf
chr8	70028635	70028735	LTR	RLTR17	ERVK	chr8RLTR1770028598	ProperStrand	7	chr8	70029234	70030730	LTR	RMER3D-int	ERVK	chr8RMER3D-int70029286	ProperStrand	5	1	-22.8469
chr18	64888830	64888894	LINE	L1_Mur3	L1	chr18L1_Mur364888764	ProperStrand	2	chr18	64888401	64888472	LINE	Lx8	L1	chr18Lx864888127	NonProperStrand	2	2	-inf
chr4	151420366	151420456	protein_coding-noncoding	Nol9	utr5	ENSMUSG00000028948	ProperStrand	1	chr4	151420800	151420900	protein_coding	Nol9	intron	ENSMUSG00000028948	ProperStrand	1	1	-inf
chr6	87893834	87893868	LTR	RodERV21-int	ERV1	chr6RodERV21-int87893662	ProperStrand	1	chr6	87890194	87891962	SINE	B1_Mur2	Alu	chr6B1_Mur287890196	NonProperStrand	2	1	-inf
chr19	7073514	7073614	protein_coding	Fermt3	utr3	ENSMUSG00000024965	NonProperStrand	49	chr19	7073423	7073513	protein_coding	Trpt1	utr3	ENSMUSG00000047656	ProperStrand	15	7	-inf
chr12	4891367	4891408	protein_coding	Ubxn2a	intron	ENSMUSG00000020634	ProperStrand	19	chr4	129148884	129148915	protein_coding	Bsdc1	intron	ENSMUSG00000040859	NonProperStrand	2	1	-20.8001
chr11	50311863	50311937	LTR	ORR1E	MaLR	chr11ORR1E50311880	NonProperStrand	1	chr11	107094842	107094889	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-inf
chr12	31679807	31679881	LINE	L1Md_T	L1	chr12L1Md_T31676291	ProperStrand	3	chr13	112578192	112578238	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-10.4703
chr11	109011836	109011872	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	114855740	114855786	LINE	Lx3A	L1	chr8Lx3A114855692	NonProperStrand	1	1	-inf
chr12	67665422	67665512	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr14	36084142	36084242	protein_coding	Grid1	intron	ENSMUSG00000041078	NonProperStrand	14	1	-14.4090
chr2	121450769	121450859	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	chr4	43664345	43664446	protein_coding	Spag8	exon	ENSMUSG00000066196	NonProperStrand	1	1	-inf
chr5	115177744	115177832	protein_coding	Git2	utr3	ENSMUSG00000041890	ProperStrand	40	chr11	73083080	73083103	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-13.9932
chr10	4268232	4268350	LINE	L1_Mus3	L1	chr10L1_Mus34266383	ProperStrand	20	chr9	123461905	123461921	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr1	142679491	142679581	LINE	L1_Mus3	L1	chr1L1_Mus3142679348	NonProperStrand	2	chr1	142679258	142679358	SINE	B1_Mm	Alu	chr1B1_Mm142679203	NonProperStrand	2	2	-inf
chr15	85462357	85462450	SINE	B4A	B4	chr15B4A85462335	ProperStrand	2	chr9	123462056	123462096	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr4	82387683	82387733	LINE	L1Md_T	L1	chr4L1Md_T82383988	ProperStrand	2	chr16	4516056	4516086	protein_coding	Srl	intron	ENSMUSG00000022519	ProperStrand	96	1	-18.4079
chr11	68356527	68356549	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	chr11	65692406	65692491	protein_coding	Dnahc9	intron	ENSMUSG00000056752	ProperStrand	54	1	-10.3299
chr5	78584809	78584899	LINE	L1Md_T	L1	chr5L1Md_T78582981	ProperStrand	1	chr5	79006706	79006806	LINE	Lx3_Mus	L1	chr5Lx3_Mus79006437	ProperStrand	1	1	-inf
chr9	104190294	104190370	LTR	MT2B2	ERVL	chr9MT2B2104189960	NonProperStrand	1	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	53966941	53966959	LTR	RMER6A	ERVK	chr13RMER6A53966779	NonProperStrand	2	chr13	97190549	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr17	39846726	39846773	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	60556963	60557020	LTR	RMER15	ERVL	chr19RMER1560556885	NonProperStrand	1	1	-inf
chr9	20911438	20911455	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	20	chr18	24993381	24993464	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	1	-11.2716
chr7	101905912	101906002	LINE	L1Md_F2	L1	chr7L1Md_F2101905825	NonProperStrand	1	chr17	39847078	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	15072383	15072421	LTR	RLTRETN_Mm	ERVK	chr17RLTRETN_Mm15072178	NonProperStrand	2	chr11	55395932	55398606	protein_coding	Glra1	intron	ENSMUSG00000000263	ProperStrand	26	1	-20.6107
chr3	31041512	31043758	LINE	Lx	L1	chr3Lx31042351	ProperStrand	3	chr9	123462039	123462064	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr19	40271678	40271763	LINE	Lx6	L1	chr19Lx640271503	NonProperStrand	1	chr19	40271762	40271818	Other	RMER1B	Other	chr19RMER1B40271756	NonProperStrand	1	1	-inf
chr15	84726209	84726299	LTR	RLTR44-int	ERVK	chr15RLTR44-int84725648	NonProperStrand	4	chr15	84726334	84726434	LTR	RLTR44-int	ERVK	chr15RLTR44-int84726293	NonProperStrand	3	3	-inf
chr11	104309860	104309925	protein_coding	1700081L11Rik	intron	ENSMUSG00000018412	NonProperStrand	39	chr4	117155774	117155849	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-10.1118
chr15	55120665	55120755	LTR	RLTR25A	ERVK	chr15RLTR25A55119783	NonProperStrand	2	chr8	84872487	84872587	protein_coding	Il15	intron	ENSMUSG00000031712	NonProperStrand	64	1	-19.4042
chr17	39846467	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	105609995	105610052	LTR	MT2A	ERVL	chr8MT2A105609948	ProperStrand	1	1	-inf
chr17	39847026	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	142786414	142786433	SINE	B1F	Alu	chr2B1F142786414	ProperStrand	1	1	-inf
chr8	88158189	88158260	LINE	L1VL2	L1	chr8L1VL288153963	ProperStrand	2	chr1	128197025	128197054	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	1	-17.3841
chr4	133423168	133423294	protein_coding	Rps6ka1	intron	ENSMUSG00000003644	NonProperStrand	25	chr10	88475388	88475404	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	37	1	-14.7753
chr7	29939186	29939276	protein_coding-noncoding	Fam98c	utr3	ENSMUSG00000030590	NonProperStrand	1	chr7	29939359	29939459	protein_coding	Fam98c	utr5	ENSMUSG00000030590	NonProperStrand	1	1	-inf
chr5	108068750	108068838	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-7.9620
chr11	29223757	29223857	LINE	Lx2	L1	chr11Lx229223714	NonProperStrand	1	chr11	29223502	29223592	LTR	IAPEY3_LTR	ERVK	chr11IAPEY3_LTR29223269	NonProperStrand	1	1	-inf
chr9	22801984	22802074	LINE	L2a	L2	chr9L2a22801886	NonProperStrand	1	chr14	33967850	33967950	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr16	42904228	42904318	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr9	54462742	54462842	protein_coding	Acsbg1	intron	ENSMUSG00000032281	ProperStrand	10	1	-12.3017
chr5	124880467	124880504	SINE	B2_Mm1t	B2	chr5B2_Mm1t124880395	ProperStrand	1	chr1	92044563	92044590	protein_coding	Iqca	intron	ENSMUSG00000026301	NonProperStrand	3	1	-inf
chr10	40258543	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	1	-3.9975
chr11	87243504	87243559	protein_coding	Tex14	intron	ENSMUSG00000010342	ProperStrand	45	chr5	149048543	149048588	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-11.6165
chr7	30004096	30004171	LTR	RLTR4_MM-int	ERV1	chr7RLTR4_MM-int30003727	ProperStrand	1	chr7	30005507	30005526	LTR	RMER17C	ERVK	chr7RMER17C30005328	NonProperStrand	1	1	-inf
chr5	115561234	115561438	protein_coding	Acads	exon	ENSMUSG00000029545	NonProperStrand	165	chr6	120637726	120637743	protein_coding	Cecr2	intron	ENSMUSG00000071226	ProperStrand	59	1	-10.0266
chr17	47526567	47526667	protein_coding	Guca1b	intron	ENSMUSG00000023979	ProperStrand	21	chr17	27694403	27694493	protein_coding	Hmga1	intron	ENSMUSG00000046711	NonProperStrand	1	1	-inf
chr17	39847277	39847341	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	82818684	82818706	SINE	B3	B2	chr6B382818655	NonProperStrand	1	1	-inf
chr5	146261021	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	1	-5.3040
chr15	77769025	77769275	LTR	RLTR14	ERV1	chr15RLTR1477769170	ProperStrand	3	chr15	77768854	77768954	LTR	RLTR40	ERVK	chr15RLTR4077768709	NonProperStrand	5	1	-inf
chr10	18571126	18571211	protein_coding	Perp	intron	ENSMUSG00000019851	ProperStrand	18	chr8	89032107	89032182	protein_coding	Abcc12	intron	ENSMUSG00000036872	ProperStrand	128	1	-12.9454
chrX	5768288	5768388	LTR	RLTR14-int	ERV1	chrXRLTR14-int5768216	NonProperStrand	1	chrX	5768652	5768742	LTR	RLTR14-int	ERV1	chrXRLTR14-int5768615	NonProperStrand	1	1	-inf
chr13	3556972	3560002	protein_coding	Gdi2	intron	ENSMUSG00000021218	ProperStrand	39	chr16	37649050	37649101	protein_coding	Ndufb4	intron	ENSMUSG00000022820	ProperStrand	9	1	-16.8268
chr9	66120306	66120406	LTR	MLT1B	MaLR	chr9MLT1B66120277	NonProperStrand	1	chr9	66120418	66120508	SINE	B3A	B2	chr9B3A66120442	NonProperStrand	2	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr17	27100821	27100896	protein_coding	Syngap1	intron	ENSMUSG00000067629	ProperStrand	30	1	-7.3498
chr10	61655833	61655923	protein_coding	Tspan15	intron	ENSMUSG00000037031	NonProperStrand	51	chr6	32938066	32938166	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-9.8956
chr17	39847179	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	34600611	34600715	LTR	MTA_Mm-int	MaLR	chr17MTA_Mm-int34599633	NonProperStrand	1	1	-inf
chr15	26380710	26380728	LINE	Lx7	L1	chr15Lx726380154	ProperStrand	4	chr1	63303243	63303377	LTR	MER54A	ERVL	chr1MER54A63303107	NonProperStrand	2	1	-20.9262
chr17	39846962	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	129076218	129078909	LTR	ORR1A2	MaLR	chr4ORR1A2129076056	ProperStrand	5	1	-3.1907
chr13	112481918	112482018	protein_coding-noncoding	Mier3	utr5	ENSMUSG00000032727	NonProperStrand	1	chr13	112482211	112482301	protein_coding	Mier3	intron	ENSMUSG00000032727	NonProperStrand	1	1	-inf
chr17	39846464	39846486	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	174289398	174289518	protein_coding	Atp5e	utr5	ENSMUSG00000016252	ProperStrand	2	1	-5.3533
chr13	21787585	21787685	LINE	L1MEg2	L1	chr13L1MEg221787566	NonProperStrand	3	chr13	23746755	23746845	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n23746759	ProperStrand	2	2	-inf
chr4	57468300	57468400	protein_coding	Palm2	intron	ENSMUSG00000090053	NonProperStrand	9	chr4	57468430	57468520	pseudogene	Gm12539	.	ENSMUSG00000081615	ProperStrand	1	1	-inf
chr14	56754164	56754245	LINE	Lx3A	L1	chr14Lx3A56754020	ProperStrand	2	chrX	139346513	139346578	protein_coding	Ammecr1	intron	ENSMUSG00000042225	ProperStrand	23	2	-inf
chr17	39846433	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	179399687	179399731	LTR	ORR1E	MaLR	chr1ORR1E179399699	NonProperStrand	1	1	-inf
chr17	39846335	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	129006565	129006581	protein_coding	Klrb1f	utr3	ENSMUSG00000030154	NonProperStrand	1	1	-inf
chr4	57784298	57784370	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	chr17	33817668	33817709	protein_coding	Hnrnpm	intron	ENSMUSG00000059208	NonProperStrand	92	1	-9.6743
chr3	96558245	96558348	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	chr14	28523640	28523658	protein_coding	Erc2	intron	ENSMUSG00000040640	ProperStrand	22	2	-inf
chr15	41846507	41846574	LINE	Lx5	L1	chr15Lx541846295	NonProperStrand	1	chr5	135919906	135919989	protein_coding	Hip1	intron	ENSMUSG00000039959	ProperStrand	226	1	-inf
chr13	24996126	24996178	DNA	MER58B	MER1_type	chr13MER58B24996121	NonProperStrand	1	chr13	24988516	24988578	protein_coding	D130043K22Rik	intron	ENSMUSG00000006711	NonProperStrand	14	1	-inf
chr11	114671810	114672289	SINE	B4A	B4	chr11B4A114671799	ProperStrand	7	chr16	43230638	43230704	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	4	-inf
chr15	98088570	98088701	LTR	RLTR1B	ERV1	chr15RLTR1B98088414	ProperStrand	2	chr1	132504427	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	1	-21.0040
chr17	39843486	39843582	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr10	75529473	75529534	protein_coding	Slc5a4b	intron	ENSMUSG00000020226	NonProperStrand	34	1	-3.5863
chr6	72611626	72611679	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	chr5	66479705	66479748	protein_coding	Rbm47	intron	ENSMUSG00000070780	ProperStrand	141	1	-7.2402
chr6	71389254	71389300	protein_coding	Rmnd5a	intron	ENSMUSG00000002222	ProperStrand	14	chr7	29987603	29987653	protein_coding	Catsperg1	intron	ENSMUSG00000049676	NonProperStrand	19	1	-17.2245
chr17	39846433	39846552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	115781677	115786978	antisense	BC060267	.	ENSMUSG00000030321	NonProperStrand	8	2	-4.2675
chr2	25599907	25599942	LTR	MMERVK10C-int	ERVK	chr2MMERVK10C-int25598962	ProperStrand	1	chr2	25600778	25600842	LTR	MMERVK10C-int	ERVK	chr2MMERVK10C-int25599908	ProperStrand	3	1	-inf
chr15	37279478	37279549	protein_coding	Grhl2	intron	ENSMUSG00000022286	ProperStrand	17	chr6	149002960	149003041	protein_coding	Dennd5b	intron	ENSMUSG00000030313	ProperStrand	36	1	-15.6347
chr8	3946782	3946826	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	chr13	17747254	17747347	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	1	-15.6064
chr5	104061677	104061763	LTR	MERVL-int	ERVL	chr5MERVL-int104060230	NonProperStrand	3	chr11	85648200	85648232	protein_coding	Tbx2	exon	ENSMUSG00000000093	ProperStrand	8	1	-20.8155
chr11	33480515	33480534	LTR	MTD	MaLR	chr11MTD33480389	ProperStrand	7	chr17	39847183	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr1	173397054	173397144	SINE	B1_Mm	Alu	chr1B1_Mm173397040	ProperStrand	1	chr1	173397162	173397262	SINE	B4A	B4	chr1B4A173397174	ProperStrand	1	1	-inf
chr17	39847127	39847169	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	31813707	31813808	protein_coding	Spcs1	exon	ENSMUSG00000021917	ProperStrand	3	1	-5.4882
chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr14	122966692	122966764	protein_coding	Pcca	intron	ENSMUSG00000041650	NonProperStrand	44	1	-5.1476
chr17	39847230	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	34158830	34158894	protein_coding	Gm5895	intron	ENSMUSG00000090937	NonProperStrand	6	1	-3.9545
chr1	64708735	64708825	LINE	Lx6	L1	chr1Lx664707818	ProperStrand	2	chr1	64708863	64708963	Other	RMER1C	Other	chr1RMER1C64708847	NonProperStrand	2	2	-inf
chr18	21244341	21244395	protein_coding	Mep1b	intron	ENSMUSG00000024313	NonProperStrand	33	chr18	21299189	21299273	protein_coding	Fam59a	intron	ENSMUSG00000042680	ProperStrand	30	1	-14.6353
chr5	70088485	70088585	LINE	Lx2B	L1	chr5Lx2B70088366	NonProperStrand	1	chr5	70088589	70088679	LTR	RLTR10	ERVK	chr5RLTR1070088563	NonProperStrand	1	1	-inf
chr17	39847440	39847505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	104663993	104664013	protein_coding	Ddx24	utr5	ENSMUSG00000041645	ProperStrand	4	1	-3.7035
chr1	181977894	181977927	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	chr4	147064005	147064028	protein_coding	Zfp534	intron	ENSMUSG00000062518	NonProperStrand	13	2	-17.6498
chr1	158965456	158965546	LINE	L1MCa	L1	chr1L1MCa158965050	NonProperStrand	1	chr1	158965575	158965675	LTR	RLTR45	ERVK	chr1RLTR45158965538	NonProperStrand	1	1	-inf
chr1	77456435	77456516	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	chr1	33935448	33935519	protein_coding	Bend6	intron	ENSMUSG00000042182	NonProperStrand	30	2	-16.7760
chr2	5379250	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr15	81427662	81430711	protein_coding	Ep300	intron	ENSMUSG00000055024	ProperStrand	52	1	-4.8235
chr9	123462036	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	29940186	29940299	protein_coding	Pkn3	intron	ENSMUSG00000026785	ProperStrand	5	1	-5.8308
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr6	3201473	3201505	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	2	-5.1710
chr12	78350926	78350994	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	122374174	122374247	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-4.3563
chr12	98434155	98434245	LINE	Lx3A	L1	chr12Lx3A98434121	NonProperStrand	1	chr12	98433911	98434009	LTR	ORR1B1	MaLR	chr12ORR1B198433638	ProperStrand	1	1	-inf
chr8	84246549	84246649	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	chr1	89473976	89474034	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	1	-6.4800
chr15	73160907	73160997	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr15	92354294	92354319	protein_coding	Pdzrn4	intron	ENSMUSG00000036218	ProperStrand	35	1	-8.5100
chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	76103413	76103508	protein_coding	Cog3	utr3	ENSMUSG00000034893	ProperStrand	5	1	-3.1907
chr6	125015878	125015950	LINE	Lx9	L1	chr6Lx9125015754	NonProperStrand	2	chr11	78182879	78182925	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	1	-18.6969
chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr13	94865012	94865058	protein_coding	Lhfpl2	intron	ENSMUSG00000045312	NonProperStrand	30	1	-5.8435
chr4	152059708	152059802	LINE	L1Md_T	L1	chr4L1Md_T152059305	NonProperStrand	7	chr7	110389494	110389537	LINE	Lx2B	L1	chr7Lx2B110389232	NonProperStrand	1	1	-inf
chr14	66966196	66966239	protein_coding	Stmn4	intron	ENSMUSG00000022044	NonProperStrand	23	chr13	97190579	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr2	155965338	155965428	protein_coding-noncoding	Nfs1	utr3	ENSMUSG00000027618	NonProperStrand	2	chr2	155965478	155965578	protein_coding	Nfs1	intron	ENSMUSG00000027618	NonProperStrand	4	2	-inf
chr4	149120030	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr16	20111968	20112087	protein_coding	Klhl24	intron	ENSMUSG00000062901	ProperStrand	54	1	-6.7800
chr2	180906775	180906855	LTR	IAPEz-int	ERVK	chr2IAPEz-int180904990	NonProperStrand	6	chr9	123461971	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr17	39848162	39848200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	92250763	92250871	protein_coding	1700057G04Rik	intron	ENSMUSG00000074139	ProperStrand	3	1	-7.3534
chr9	118391981	118392044	protein_coding	Eomes	intron	ENSMUSG00000032446	NonProperStrand	12	chr16	10842162	10842181	protein_coding	A630055G03Rik	utr3	ENSMUSG00000037991	ProperStrand	46	1	-15.8646
chr17	39846492	39846551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	75540804	75540822	protein_coding	Lcp1	intron	ENSMUSG00000021998	ProperStrand	4	1	-3.6552
chr8	107367456	107367490	LINE	L1Md_F2	L1	chr8L1Md_F2107366854	ProperStrand	4	chr4	6370025	6370105	protein_coding	Nsmaf	intron	ENSMUSG00000028245	NonProperStrand	8	1	-inf
chr17	39846736	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	47092893	47093774	protein_coding	Ina	intron	ENSMUSG00000034336	ProperStrand	2	1	-5.3533
chr3	129227512	129227612	SINE	B1_Mm	Alu	chr3B1_Mm129227473	NonProperStrand	2	chr3	129227261	129227351	SINE	B3	B2	chr3B3129227216	ProperStrand	1	1	-inf
chr5	3693224	3693240	protein_coding	Ankib1	exon	ENSMUSG00000040351	NonProperStrand	8	chr5	17776752	17776778	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-14.2452
chr11	121335417	121335469	protein_coding	Tbcd	intron	ENSMUSG00000039230	NonProperStrand	30	chr8	122906332	122906398	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-7.5946
chr2	80664834	80664880	LINE	L1Md_F2	L1	chr2L1Md_F280661127	NonProperStrand	3	chr2	80666349	80666418	LINE	L1Md_T	L1	chr2L1Md_T80666199	NonProperStrand	1	1	-inf
chr9	47788095	47789699	DNA	RCHARR1	MER1_type	chr9RCHARR147787956	NonProperStrand	1	chr9	47827054	47827176	SINE	ID_B1	B4	chr9ID_B147826999	NonProperStrand	3	1	-inf
chr17	32139644	32139731	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	chr2	120150456	120150474	protein_coding	Vps39	intron	ENSMUSG00000027291	NonProperStrand	1	1	-inf
chr3	37289843	37289943	protein_coding	Fgf2	intron	ENSMUSG00000037225	NonProperStrand	2	chr3	37303867	37303957	protein_coding	Nudt6	utr3	ENSMUSG00000050174	ProperStrand	1	1	-inf
chr10	13239831	13239921	LTR	MTE-int	MaLR	chr10MTE-int13239747	ProperStrand	1	chr10	13239586	13239686	LTR	RLTR28	ERVL	chr10RLTR2813239463	NonProperStrand	1	1	-inf
chr17	39845954	39845984	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr17	35980066	35980086	protein_coding	Mdc1	intron	ENSMUSG00000061607	ProperStrand	27	1	-3.3782
mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	12	chr9	123461931	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr17	39846415	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	35981610	35981658	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	20	-4.7350
chr1	122357204	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr9	44743787	44743885	protein_coding	Ube4a	intron	ENSMUSG00000059890	ProperStrand	16	1	-11.5920
chr5	146261265	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr8	25201014	25201060	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-5.1002
chr10	116848359	116849032	LTR	RMER17C	ERVK	chr10RMER17C116848082	NonProperStrand	1	chr17	39846462	39846531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	41565796	41565896	LTR	ORR1C2	MaLR	chr3ORR1C241565801	NonProperStrand	1	chr3	41565590	41565680	SINE	B3A	B2	chr3B3A41565590	ProperStrand	8	1	-inf
chr17	39847174	39847225	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	81663798	81663846	protein_coding	Galntl1	intron	ENSMUSG00000021130	NonProperStrand	3	1	-5.4882
chr14	50817210	50817242	LINE	L1_Mus3	L1	chr14L1_Mus350817156	NonProperStrand	1	chr9	123461923	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	29173057	29173160	LTR	MTB	MaLR	chr11MTB29173032	ProperStrand	4	chr17	39846810	39846858	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr1	187305277	187305391	SINE	B2_Mm1a	B2	chr1B2_Mm1a187305226	NonProperStrand	1	chr9	123461898	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	118447114	118447169	protein_coding	Bub1b	intron	ENSMUSG00000040084	ProperStrand	5	chr17	30668193	30668258	protein_coding	Btbd9	intron	ENSMUSG00000062202	NonProperStrand	156	1	-15.2749
chr8	28512466	28512566	SINE	B4A	B4	chr8B4A28512406	ProperStrand	1	chr8	28512271	28512361	Simple_repeat	(GA)n	Simple_repeat	chr8(GA)n28512274	ProperStrand	1	1	-inf
chr9	100947784	100947859	SINE	B2_Mm2	B2	chr9B2_Mm2100947725	ProperStrand	1	chr7	99503879	99503919	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-inf
chr17	39848143	39848198	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	4239932	4239977	protein_coding	Map2k7	intron	ENSMUSG00000002948	ProperStrand	15	1	-3.9151
chr14	86985725	86986077	Simple_repeat	(GAAA)n	Simple_repeat	chr14(GAAA)n86986020	NonProperStrand	1	chr14	87090994	87091056	protein_coding	Diap3	intron	ENSMUSG00000022021	ProperStrand	76	1	-inf
chr10	96624727	96624827	DNA	MER82	MER2_type	chr10MER8296624752	ProperStrand	5	chr10	96624641	96624731	LTR	ORR1C1	MaLR	chr10ORR1C196624397	NonProperStrand	4	4	-inf
chr14	19932521	19932641	LINE	L1Md_T	L1	chr14L1Md_T19932483	NonProperStrand	1	chr14	19933600	19933625	LINE	L1VL4	L1	chr14L1VL419933487	ProperStrand	2	1	-inf
chr10	93230776	93230887	LINE	L2a	L2	chr10L2a93230712	NonProperStrand	1	chr17	39847659	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	17394066	17394128	LTR	RLTR25B	ERVK	chr17RLTR25B17393414	NonProperStrand	2	chr8	80766206	80766278	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-14.7383
chr4	47794999	47795099	LINE	L1M5	L1	chr4L1M547794906	NonProperStrand	1	chr4	47795279	47795369	LINE	Lx3_Mus	L1	chr4Lx3_Mus47795212	NonProperStrand	1	1	-inf
chr6	99764219	99764319	LINE	L1MEc	L1	chr6L1MEc99764185	NonProperStrand	4	chr6	99764344	99764434	SINE	RSINE1	B4	chr6RSINE199764319	NonProperStrand	4	4	-inf
chr10	121473484	121473506	protein_coding	Srgap1	intron	ENSMUSG00000020121	ProperStrand	69	chr4	141660925	141661035	protein_coding	Kazn	intron	ENSMUSG00000040606	ProperStrand	60	1	-11.7414
chr3	90337800	90337869	LTR	RLTR19-int	ERVK	chr3RLTR19-int90337678	NonProperStrand	1	chr3	90338567	90338626	Other	RMER1B	Other	chr3RMER1B90338565	NonProperStrand	2	1	-inf
chr6	87997228	87997259	SINE	B1_Mur4	Alu	chr6B1_Mur487997219	ProperStrand	15	chr9	56223577	56223694	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	3	-inf
chr19	29512565	29512665	protein_coding	Pdcd1lg2	intron	ENSMUSG00000016498	NonProperStrand	7	chr19	29515080	29515170	protein_coding	Pdcd1lg2	intron	ENSMUSG00000016498	ProperStrand	9	1	-20.6217
chr4	132352941	132352983	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	276	chr11	117077119	117077151	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-7.1259
chr1	192745639	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr6	143208051	143208088	lincRNA	D6Ertd474e	intron	ENSMUSG00000072679	ProperStrand	65	1	-12.3119
chr7	107211930	107211983	LINE	L1MEc	L1	chr7L1MEc107211865	NonProperStrand	1	chr2	152795761	152795841	protein_coding	Ttll9	intron	ENSMUSG00000074673	NonProperStrand	58	1	-inf
chr15	35937190	35937280	LINE	L1MCa	L1	chr15L1MCa35937112	NonProperStrand	3	chr17	39847063	39847163	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr1	161037358	161037434	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	8	chr11	29466695	29466750	protein_coding	1700034F02Rik	intron	ENSMUSG00000020461	ProperStrand	7	1	-20.8338
chr12	119325154	119325192	protein_coding	Dnahc11	intron	ENSMUSG00000018581	ProperStrand	13	chr11	32574851	32574942	protein_coding	Fbxw11	intron	ENSMUSG00000020271	ProperStrand	39	1	-16.0324
chr7	121987834	121987876	protein_coding	Insc	intron	ENSMUSG00000048782	NonProperStrand	66	chr15	81954724	81954817	protein_coding	Mei1	intron	ENSMUSG00000068117	NonProperStrand	96	1	-10.8858
chr2	154509176	154509269	protein_coding	Chmp4b	intron	ENSMUSG00000038467	ProperStrand	81	chr16	31009282	31009348	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	1	-8.1338
chr5	146261175	146261209	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	83537941	83537986	protein_coding	Scube1	intron	ENSMUSG00000016763	NonProperStrand	9	1	-8.8915
chr17	39846767	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	129845019	129845064	LTR	MLT1J	MaLR	chr5MLT1J129845013	ProperStrand	1	1	-inf
chr15	55132583	55132651	SINE	B2_Mm2	B2	chr15B2_Mm255132487	NonProperStrand	2	chrX	85144940	85149175	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	NonProperStrand	79	1	-19.2571
chr5	6461337	6461437	LINE	Lx9	L1	chr5Lx96461242	ProperStrand	1	chr5	6461499	6461589	LINE	Lx9	L1	chr5Lx96461494	NonProperStrand	1	1	-inf
chr17	35835868	35835953	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr5	140611373	140611440	protein_coding	Mad1l1	intron	ENSMUSG00000029554	NonProperStrand	52	1	-9.5996
chr15	69067604	69067694	LINE	L1Md_F2	L1	chr15L1Md_F269067506	ProperStrand	1	chr15	69067306	69067406	LINE	Lx2	L1	chr15Lx269066829	ProperStrand	1	1	-inf
chr19	4613873	4613981	protein_coding	Lrfn4	exon	ENSMUSG00000045045	ProperStrand	8	chr7	141264384	141264424	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-13.9133
chr7	110330933	110331014	LINE	Lx6	L1	chr7Lx6110329257	NonProperStrand	1	chr5	93175603	93175653	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	1	-inf
chr19	10541178	10541268	LTR	MLT1N2	MaLR	chr19MLT1N210541167	ProperStrand	2	chr19	10541316	10541416	LTR	MTD	MaLR	chr19MTD10541292	ProperStrand	2	2	-inf
chr9	48163043	48163114	LINE	Lx6	L1	chr9Lx648162590	NonProperStrand	2	chr7	107243589	107243620	protein_coding	Pold3	intron	ENSMUSG00000030726	NonProperStrand	33	1	-20.7426
chr2	5379231	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr16	19883804	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	3	-5.0174
chr12	83952767	83952830	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	72	chr9	110940133	110940216	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-10.5506
chr6	72765045	72765104	SINE	RSINE1	B4	chr6RSINE172764979	NonProperStrand	1	chr9	100883983	100884077	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	1	-inf
chr17	39846588	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	7386958	7386977	SINE	B4	B4	chr15B47386892	NonProperStrand	1	1	-inf
chr7	109881244	109881344	LINE	L1Md_F2	L1	chr7L1Md_F2109880987	NonProperStrand	1	chr7	109882646	109882736	Other	RMER1A	Other	chr7RMER1A109881703	NonProperStrand	5	1	-inf
chr17	39847381	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	36140603	36140654	SINE	B3	B2	chr12B336140613	ProperStrand	1	1	-inf
chr2	31036654	31037165	protein_coding	Gpr107	intron	ENSMUSG00000000194	ProperStrand	11	chr15	79597177	79597290	protein_coding	Dnalc4	intron	ENSMUSG00000022420	ProperStrand	15	1	-18.2570
chr5	86807542	86807642	LINE	L1Md_F2	L1	chr5L1Md_F286807487	ProperStrand	1	chrX	74015186	74015276	LINE	L1VL1	L1	chrXL1VL174014520	NonProperStrand	2	1	-inf
chr2	33374442	33374542	LINE	L1MB3	L1	chr2L1MB333374443	ProperStrand	2	chr2	33374288	33374378	SINE	RSINE1	B4	chr2RSINE133374289	ProperStrand	2	2	-inf
chr3	35899581	35899676	antisense	A330050B17Rik	.	ENSMUSG00000086392	NonProperStrand	2	chr3	35899237	35899289	protein_coding	Mccc1	intron	ENSMUSG00000027709	ProperStrand	5	1	-inf
chr17	19895663	19895763	LINE	L1_Mus3	L1	chr17L1_Mus319893168	ProperStrand	1	chrX	117142447	117142537	LINE	Lx9	L1	chrXLx9117142293	NonProperStrand	1	1	-inf
chr9	123461931	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	117346681	117346809	protein_coding	Gm11733	intron	ENSMUSG00000069588	ProperStrand	6	1	-5.4370
chr13	21783068	21783136	LINE	L1MC4a	L1	chr13L1MC4a21782980	NonProperStrand	5	chr17	39848019	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr2	33240728	33240801	LTR	MTA_Mm	MaLR	chr2MTA_Mm33240513	NonProperStrand	1	chr16	14376714	14376763	protein_coding	Abcc1	intron	ENSMUSG00000023088	ProperStrand	122	1	-inf
chr3	152785407	152785461	LTR	MTEb	MaLR	chr3MTEb152785284	NonProperStrand	1	chr5	140047625	140047683	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	1	-inf
chr1	33380334	33380424	LINE	L1_Mur1	L1	chr1L1_Mur133380326	NonProperStrand	1	chr1	33380227	33380327	LINE	Lx6	L1	chr1Lx633379984	NonProperStrand	1	1	-inf
chr12	17281003	17281053	protein_coding	Pdia6	intron	ENSMUSG00000020571	ProperStrand	22	chr12	101040262	101040320	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	ProperStrand	245	1	-11.2337
chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr3	96245987	96246053	protein_coding	BC107364	exon	ENSMUSG00000046317	NonProperStrand	4	1	-14.9946
chr3	75621451	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr2	90395158	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-10.5895
chr3	26512418	26512518	DNA	Kanga1	Tc2	chr3Kanga126512250	NonProperStrand	1	chr3	26512089	26512179	LINE	L1_Mus1	L1	chr3L1_Mus126511547	ProperStrand	1	1	-inf
chr1	189000549	189000614	protein_coding	Spata17	intron	ENSMUSG00000026611	ProperStrand	80	chr16	23110837	23110931	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-11.3141
chr11	79143184	79143274	LINE	L1MD	L1	chr11L1MD79143183	NonProperStrand	1	chr11	79143055	79143155	SINE	B1_Mur1	Alu	chr11B1_Mur179143037	ProperStrand	1	1	-inf
chr17	39848294	39848379	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	25188315	25188334	protein_coding	Dcdc2a	intron	ENSMUSG00000035910	NonProperStrand	8	2	-8.6933
chr11	48816449	48816525	protein_coding	Olfr56	intron	ENSMUSG00000040328	NonProperStrand	34	chr11	48806422	48806466	protein_coding	Tgtp1	intron	ENSMUSG00000078922	ProperStrand	8	1	-17.2797
chr12	44425162	44425252	LINE	L1Md_F3	L1	chr12L1Md_F344425004	NonProperStrand	1	chr12	44425540	44425640	LTR	RMER12B	ERVK	chr12RMER12B44425536	NonProperStrand	1	1	-inf
chr10	40258541	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-5.4228
chr16	35981700	35981749	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr2	101962839	101962905	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-8.7797
chr12	94409368	94409386	LINE	L1_Mus2	L1	chr12L1_Mus294408819	NonProperStrand	4	chr4	134004902	134004990	antisense	1700021N21Rik	.	ENSMUSG00000087343	ProperStrand	10	1	-inf
chr1	149653425	149653442	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int149652500	ProperStrand	16	chr17	39843596	39843728	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-5.0382
chr17	39848561	39848600	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	19690419	19690541	protein_coding	Gm6483	intron	ENSMUSG00000087153	ProperStrand	1	1	-inf
chr14	76516717	76516737	protein_coding	Nufip1	intron	ENSMUSG00000022009	ProperStrand	21	chr3	79456398	79456503	protein_coding	Rxfp1	intron	ENSMUSG00000034009	NonProperStrand	3	1	-19.6937
chr9	120127882	120127972	LTR	MLT1E1A	MaLR	chr9MLT1E1A120127793	NonProperStrand	2	chr9	120127971	120128071	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120127985	ProperStrand	1	1	-inf
chr17	14862414	14862514	LINE	L1ME1	L1	chr17L1ME114862373	ProperStrand	1	chr17	14862879	14862969	LINE	Lx9	L1	chr17Lx914862528	NonProperStrand	1	1	-inf
chr7	116189871	116190017	protein_coding-noncoding	Ric3	utr3	ENSMUSG00000048330	ProperStrand	16	chr15	81811224	81811242	protein_coding	1700029P11Rik	exon	ENSMUSG00000061633	NonProperStrand	1	1	-inf
chr6	125186539	125186633	protein_coding	Cd27	exon	ENSMUSG00000030336	ProperStrand	88	chr9	65201723	65201761	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-10.2874
chr17	39845969	39846051	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	107518454	107518526	protein_coding	Ppme1	intron	ENSMUSG00000030718	NonProperStrand	28	1	-3.3111
chr11	109011652	109011711	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	23111315	23111364	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-4.0673
chr3	41572610	41572683	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr6	128088055	128088130	protein_coding	Tspan9	intron	ENSMUSG00000030352	ProperStrand	182	1	-9.0747
chr6	3201517	3201559	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr3	135551147	135551250	protein_coding	Slc39a8	utr3	ENSMUSG00000053897	ProperStrand	45	1	-3.4154
chr2	131275776	131275866	LTR	ORR1D1-int	MaLR	chr2ORR1D1-int131275522	NonProperStrand	1	chr2	131274637	131274737	LTR	RMER17C	ERVK	chr2RMER17C131274313	NonProperStrand	1	1	-inf
chr9	68766585	68766688	protein_coding	Rora	intron	ENSMUSG00000032238	NonProperStrand	32	chr3	40702850	40702945	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	NonProperStrand	16	3	-inf
chr3	98155083	98155173	LTR	MTEa	MaLR	chr3MTEa98155038	ProperStrand	1	chr3	98155214	98155314	SINE	B3A	B2	chr3B3A98155195	ProperStrand	1	1	-inf
chr14	50785576	50785666	LTR	MERVK26-int	ERVK	chr14MERVK26-int50785598	NonProperStrand	1	chr14	50785357	50785457	LTR	MT2B	ERVL	chr14MT2B50785024	NonProperStrand	1	1	-inf
chr7	24084588	24084611	DNA	URR1B	MER1_type	chr7URR1B24084478	ProperStrand	1	chr7	24085237	24085367	LINE	Lx6	L1	chr7Lx624085047	NonProperStrand	1	1	-inf
chr6	90824913	90825003	LTR	MTA_Mm	MaLR	chr6MTA_Mm90824908	NonProperStrand	4	chr6	90824796	90824896	LTR	ORR1E	MaLR	chr6ORR1E90824574	NonProperStrand	3	3	-inf
chr1	110744556	110744656	LINE	Lx4A	L1	chr1Lx4A110743589	ProperStrand	1	chr1	110745017	110745107	LINE	Lx4A	L1	chr1Lx4A110744680	ProperStrand	1	1	-inf
chr18	64579195	64581905	SINE	RSINE1	B4	chr18RSINE164579137	ProperStrand	1	chr17	26069843	26069903	lincRNA	Gm16278	intron	ENSMUSG00000084862	ProperStrand	3	1	-inf
chr15	76890241	76890331	DNA	URR1A	MER1_type	chr15URR1A76890218	NonProperStrand	1	chr15	76890403	76890503	SINE	B1_Mus2	Alu	chr15B1_Mus276890354	ProperStrand	1	1	-inf
chr9	53528950	53529040	LINE	L4	RTE	chr9L453528898	ProperStrand	1	chr9	53528772	53528872	SINE	B3	B2	chr9B353528653	ProperStrand	1	1	-inf
chr17	39848250	39848320	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	104057374	104057393	protein_coding	Slain1	intron	ENSMUSG00000055717	NonProperStrand	2	1	-8.4422
chr19	11960809	11960899	SINE	B4A	B4	chr19B4A11960689	ProperStrand	1	chr19	11960474	11960574	SINE	MIRb	MIR	chr19MIRb11960485	ProperStrand	1	1	-inf
chr13	23739108	23739208	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int23738136	NonProperStrand	71	chr3	123507977	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	1	-12.1337
chr2	22744879	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	94644178	94644281	protein_coding	Ttc3	intron	ENSMUSG00000040785	ProperStrand	131	1	-5.2752
chr5	111346197	111346270	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	chr5	150403275	150403339	protein_coding	Wdr95	intron	ENSMUSG00000029658	ProperStrand	11	1	-13.1761
chr17	39847207	39847245	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	85341340	85341439	protein_coding	Gm4825	exon	ENSMUSG00000063548	ProperStrand	1	1	-inf
chr14	45459932	45460022	LTR	RMER17C	ERVK	chr14RMER17C45459949	NonProperStrand	3	chr9	65201724	65201824	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-17.4070
chr1	65565556	65565656	LINE	L1Md_F2	L1	chr1L1Md_F265564049	NonProperStrand	2	chr1	50245899	50245989	LTR	RLTR13B3	ERVK	chr1RLTR13B350245641	ProperStrand	1	1	-inf
chr8	73799104	73799204	protein_coding	Myo9b	intron	ENSMUSG00000004677	ProperStrand	5	chr8	73791632	73791722	protein_coding	Haus8	intron	ENSMUSG00000035439	ProperStrand	1	1	-inf
chr11	109011675	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	178971205	178971238	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	1	-3.0600
chr18	50820889	50821017	LINE	L1Md_A	L1	chr18L1Md_A50818348	ProperStrand	2	chr9	123462011	123462029	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr5	26848127	26848210	LINE	L1_Mus1	L1	chr5L1_Mus126848059	NonProperStrand	1	chr17	39847552	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	109520603	109521608	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-4.4896
chr18	37763251	37763318	LTR	MYSERV-int	ERVK	chr18MYSERV-int37763053	ProperStrand	1	chr8	121579213	121579247	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	1	-inf
chr11	97175957	97176047	SINE	B1_Mus2	Alu	chr11B1_Mus297175953	ProperStrand	1	chr11	97175765	97175865	SINE	B2_Mm1a	B2	chr11B2_Mm1a97175700	ProperStrand	1	1	-inf
chr7	102268249	102268349	DNA	Tigger9b	MER2_type	chr7Tigger9b102268244	NonProperStrand	5	chr7	102268137	102268227	LTR	RMER19A	ERVK	chr7RMER19A102267527	NonProperStrand	5	4	-inf
chr4	142202427	142202510	LINE	L1_Mur2	L1	chr4L1_Mur2142202392	ProperStrand	10	chr7	96356340	96356418	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-12.5645
chr12	94409368	94409384	LINE	L1_Mus2	L1	chr12L1_Mus294408819	NonProperStrand	4	chr7	26467790	26467920	protein_coding	B9d2	intron	ENSMUSG00000063439	ProperStrand	2	1	-20.9262
chr7	137007864	137007954	DNA	RMER30	MER1_type	chr7RMER30137007823	NonProperStrand	2	chr7	137007975	137008075	LINE	L1MC5	L1	chr7L1MC5137007991	NonProperStrand	2	2	-inf
chr13	15096484	15096574	LINE	L1Md_T	L1	chr13L1Md_T15096474	NonProperStrand	1	chr13	15120203	15120303	LINE	L1Md_T	L1	chr13L1Md_T15119476	NonProperStrand	1	1	-inf
chr17	39847674	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	30444445	30445376	SINE	B3A	B2	chr7B3A30445333	NonProperStrand	1	1	-inf
chr17	39847767	39847868	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	35251242	35252638	LTR	MTD	MaLR	chr18MTD35251237	NonProperStrand	2	1	-5.4040
chr10	50078282	50078372	LTR	ORR1A3-int	MaLR	chr10ORR1A3-int50077652	NonProperStrand	1	chr10	50078453	50078553	LTR	ORR1A3-int	MaLR	chr10ORR1A3-int50078411	NonProperStrand	1	1	-inf
chr9	22008345	22010169	LTR	LTRIS3	ERV1	chr9LTRIS322008247	NonProperStrand	2	chr9	22010539	22010584	LTR	RLTR9A	ERVK	chr9RLTR9A22010432	NonProperStrand	2	2	-inf
chr8	128102168	128102268	LTR	RMER19A	ERVK	chr8RMER19A128102149	ProperStrand	1	chr8	128102048	128102138	SINE	B1F	Alu	chr8B1F128101991	ProperStrand	1	1	-inf
chr18	80407605	80409018	protein_coding	Gm16286	intron	ENSMUSG00000024571	NonProperStrand	20	chr18	80419821	80420272	protein_coding	Txnl4a	utr3	ENSMUSG00000057130	NonProperStrand	74	4	-inf
chr18	24130916	24131006	protein_coding	Zscan30	intron	ENSMUSG00000024274	NonProperStrand	1	chr18	24131634	24131734	protein_coding	Zscan30	intron	ENSMUSG00000024274	ProperStrand	1	1	-inf
chr2	174274681	174274771	SINE	B3A	B2	chr2B3A174274654	ProperStrand	2	chr2	174274484	174274584	SINE	ID_B1	B4	chr2ID_B1174274400	ProperStrand	1	1	-inf
chr17	39846503	39846538	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	90258399	90258444	LTR	RMER15-int	ERVL	chr9RMER15-int90258203	NonProperStrand	4	1	-3.6552
chr6	128449185	128449260	protein_coding	Pzp	intron	ENSMUSG00000030359	NonProperStrand	26	chr2	153765001	153765032	protein_coding	Bpifb4	intron	ENSMUSG00000074665	ProperStrand	13	1	-16.8957
chr9	59391640	59391728	protein_coding	Hexa	intron	ENSMUSG00000025232	NonProperStrand	14	chr4	98377852	98377921	protein_coding	Inadl	intron	ENSMUSG00000061859	NonProperStrand	11	2	-21.2730
chr17	91286570	91286587	protein_coding	Nrxn1	intron	ENSMUSG00000024109	NonProperStrand	30	chr11	101024860	101024913	protein_coding	Plekhh3	exon	ENSMUSG00000035172	NonProperStrand	4	1	-19.5799
chr5	136932974	136932995	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	113	chr13	97190546	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.9146
chr17	28245869	28245953	LTR	MLT1J	MaLR	chr17MLT1J28245852	NonProperStrand	1	chr17	28245410	28245457	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n28245319	ProperStrand	1	1	-inf
chr13	44869584	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr1	72711765	72712197	protein_coding	Ankar	exon	ENSMUSG00000039342	NonProperStrand	61	2	-7.4285
chr1	93791756	93791856	LTR	ORR1E	MaLR	chr1ORR1E93791756	ProperStrand	1	chr1	93791973	93792063	LTR	RMER19B	ERVK	chr1RMER19B93791940	NonProperStrand	1	1	-inf
chr4	26136714	26136814	LINE	L1_Mur2	L1	chr4L1_Mur226136184	ProperStrand	1	chr6	72352042	72352132	SINE	B3A	B2	chr6B3A72351982	ProperStrand	1	1	-inf
chr17	39847636	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	167015413	167017746	lincRNA	1110018N20Rik	intron	ENSMUSG00000085151	ProperStrand	4	1	-3.7035
chr17	39848098	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	11081716	11081770	protein_coding	Txndc11	intron	ENSMUSG00000022498	NonProperStrand	4	1	-6.6701
chr15	79833272	79833292	protein_coding	Pdgfb	intron	ENSMUSG00000000489	NonProperStrand	2	chr16	21584496	21584595	protein_coding	Vps8	intron	ENSMUSG00000033653	ProperStrand	86	1	-18.6404
chr11	109011811	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	94737977	94738061	protein_coding	Cradd	intron	ENSMUSG00000045867	NonProperStrand	36	1	-7.1143
chr2	38285262	38285340	lincRNA	Gm13589	intron	ENSMUSG00000085950	NonProperStrand	6	chr16	23111703	23111727	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	7	1	-23.4069
chr6	121042598	121042684	LINE	L1MB8	L1	chr6L1MB8121042529	NonProperStrand	1	chr6	121042755	121042822	SINE	B1_Mus2	Alu	chr6B1_Mus2121042738	ProperStrand	1	1	-inf
chr12	11291551	11291632	protein_coding	Smc6	intron	ENSMUSG00000020608	ProperStrand	24	chr14	122614895	122614915	protein_coding	Clybl	intron	ENSMUSG00000025545	ProperStrand	59	1	-13.9164
chr12	117703320	117703397	LINE	L1_Mus2	L1	chr12L1_Mus2117703020	ProperStrand	1	chr12	117698012	117698074	protein_coding	Ncapg2	intron	ENSMUSG00000042029	ProperStrand	22	1	-inf
chr2	181139954	181140054	protein_coding	Zbtb46	intron	ENSMUSG00000027583	NonProperStrand	19	chr2	181140401	181140491	protein_coding	Zbtb46	intron	ENSMUSG00000027583	ProperStrand	7	1	-18.5508
chr11	68328536	68328651	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	chr1	59872887	59872904	protein_coding	Bmpr2	intron	ENSMUSG00000067336	NonProperStrand	6	1	-14.8915
chr2	128637144	128637172	SINE	PB1D10	Alu	chr2PB1D10128637130	NonProperStrand	2	chr14	117482380	117482427	protein_coding	Gpc6	intron	ENSMUSG00000058571	ProperStrand	66	1	-18.9169
chr12	78350924	78351002	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	38527893	38529573	protein_coding	Nsg1	utr3	ENSMUSG00000029126	ProperStrand	32	1	-7.1445
chr17	39847847	39847919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	49801200	49801238	SINE	B3	B2	chr7B349801153	NonProperStrand	3	1	-4.3512
chr6	52283284	52283383	SINE	B3	B2	chr6B352283265	ProperStrand	1	chr12	70962889	70962928	protein_coding	Map4k5	intron	ENSMUSG00000034761	ProperStrand	7	1	-inf
chr2	131281602	131281676	LTR	ORR1B1	MaLR	chr2ORR1B1131281537	ProperStrand	1	chr2	33055531	33055599	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-inf
chr10	7926442	7926504	protein_coding	Ust	utr3	ENSMUSG00000047712	ProperStrand	54	chr11	54938618	54938690	protein_coding	Slc36a3	intron	ENSMUSG00000049491	ProperStrand	154	1	-10.3428
chr5	69156562	69156652	LINE	L1Md_T	L1	chr5L1Md_T69156474	NonProperStrand	1	chr5	69156240	69156340	LTR	RMER15	ERVL	chr5RMER1569155926	ProperStrand	1	1	-inf
chr8	79978042	79978132	protein_coding	Arhgap10	intron	ENSMUSG00000037148	NonProperStrand	8	chr12	109496372	109496472	protein_coding	Ccdc85c	intron	ENSMUSG00000084883	ProperStrand	8	1	-19.9835
chr9	110604186	110614914	protein_coding	Ccdc12	intron	ENSMUSG00000019659	ProperStrand	25	chr8	119822335	119822435	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	NonProperStrand	22	1	-15.8496
chr3	90213223	90213283	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	chr4	48561626	48561676	protein_coding	5730528L13Rik	intron	ENSMUSG00000039693	ProperStrand	11	1	-16.9446
chr16	33914143	33914204	protein_coding	Itgb5	intron	ENSMUSG00000022817	ProperStrand	32	chr17	35960151	35960628	protein_coding	Flot1	utr5	ENSMUSG00000059714	NonProperStrand	20	2	-inf
chr10	14968139	14968229	LINE	Lx	L1	chr10Lx14967734	NonProperStrand	1	chr10	14968275	14968375	SINE	B1F	Alu	chr10B1F14968292	NonProperStrand	1	1	-inf
chr6	88302722	88302754	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	chr11	80448788	80448830	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	1	-7.9483
chr17	39845868	39845957	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr10	91182095	91182162	SINE	MIR	MIR	chr10MIR91182034	NonProperStrand	2	1	-9.0607
chr11	106773649	106773756	protein_coding	Smurf2	intron	ENSMUSG00000018363	ProperStrand	51	chr7	99956516	99956553	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-9.8473
chr8	47872940	47873016	protein_coding	Irf2	intron	ENSMUSG00000031627	NonProperStrand	109	chr2	32231690	32231747	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	193	1	-8.4840
chr7	72337552	72337642	LINE	L1Md_T	L1	chr7L1Md_T72333376	ProperStrand	1	chr17	21524714	21524814	protein_coding	Zfp677	intron	ENSMUSG00000062743	NonProperStrand	2	1	-inf
chr1	136336009	136336049	SINE	B1_Mus2	Alu	chr1B1_Mus2136335995	NonProperStrand	3	chr1	136317782	136317875	protein_coding	Adipor1	intron	ENSMUSG00000026457	NonProperStrand	20	3	-inf
chr19	41918007	41918049	SINE	B1_Mus2	Alu	chr19B1_Mus241917904	ProperStrand	9	chr19	41918247	41918318	SINE	B4A	B4	chr19B4A41918257	ProperStrand	3	1	-21.0885
chr17	39843427	39843481	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr18	46354908	46354974	protein_coding	Trim36	intron	ENSMUSG00000033949	ProperStrand	5	2	-12.3413
chr5	146261079	146261110	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	66229464	66229570	protein_coding	Ralbp1	intron	ENSMUSG00000024096	ProperStrand	9	1	-8.8915
chr12	102584446	102588516	LINE	L1Md_T	L1	chr12L1Md_T102583494	ProperStrand	5	chr12	102588479	102606095	LINE	L1Md_T	L1	chr12L1Md_T102585662	ProperStrand	6	1	-inf
chr16	90634647	90634737	LTR	ERVL-E-int	ERVL	chr16ERVL-E-int90634449	ProperStrand	1	chr16	90634940	90635040	LTR	ERVL-E-int	ERVL	chr16ERVL-E-int90634858	ProperStrand	1	1	-inf
chr13	97493193	97493287	LINE	L1_Rod	L1	chr13L1_Rod97492375	NonProperStrand	23	chr13	97190582	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr3	9378846	9378936	LINE	L1_Mur3	L1	chr3L1_Mur39378104	ProperStrand	1	chr3	9379269	9379369	LINE	L1_Mur3	L1	chr3L1_Mur39379155	ProperStrand	1	1	-inf
chr17	39847659	39847754	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	110029425	110029441	protein_coding	Wwp2	intron	ENSMUSG00000031930	NonProperStrand	2	1	-5.4040
chr19	8710004	8710051	LTR	MMERVK10C-int	ERVK	chr19MMERVK10C-int8709035	ProperStrand	11	chr19	8710088	8710145	LTR	MMERVK10C-int	ERVK	chr19MMERVK10C-int8710017	ProperStrand	1	1	-inf
chr11	70651979	70652012	LINE	L1M4	L1	chr11L1M470651982	ProperStrand	2	chr17	39846807	39846830	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	5009103	5009159	protein_coding	Ccdc106	exon	ENSMUSG00000035228	NonProperStrand	5	1	-3.2379
chr1	164453552	164457785	LINE	L1MEc	L1	chr1L1MEc164453530	NonProperStrand	6	chr1	164443270	164453508	LINE	Lx9	L1	chr1Lx9164443258	NonProperStrand	7	6	-inf
chr1	46809410	46809500	LINE	L1Md_A	L1	chr1L1Md_A46808287	NonProperStrand	13	chr6	140460416	140460516	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	1	-12.5979
chr6	34897687	34898560	protein_coding-noncoding	2010107G12Rik	utr3	ENSMUSG00000029847	ProperStrand	8	chr6	34899326	34901548	protein_coding	2010107G12Rik	intron	ENSMUSG00000029847	ProperStrand	21	3	-inf
chr7	6576764	6576815	LTR	IAPEy-int	ERVK	chr7IAPEy-int6575507	NonProperStrand	12	chr16	33586812	33586910	protein_coding	Slc12a8	intron	ENSMUSG00000035506	ProperStrand	102	1	-14.2431
chr6	108818740	108818822	Simple_repeat	(GGAA)n	Simple_repeat	chr6(GGAA)n108818735	ProperStrand	1	chr9	123461882	123461945	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	146846476	146846575	LTR	ORR1D1-int	MaLR	chr1ORR1D1-int146845369	NonProperStrand	1	chr1	146846927	146847017	LTR	ORR1D1	MaLR	chr1ORR1D1146846710	NonProperStrand	1	1	-inf
chr15	89305434	89305617	protein_coding	Arsa	exon	ENSMUSG00000022620	ProperStrand	26	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-13.7859
chr13	93498349	93498439	LINE	L1_Mus2	L1	chr13L1_Mus293496369	NonProperStrand	11	chr13	93472742	93498349	protein_coding	Serinc5	intron	ENSMUSG00000021703	NonProperStrand	22	1	-17.5975
chrX	52476255	52476309	LINE	L1_Mus1	L1	chrXL1_Mus152475414	NonProperStrand	3	chr15	39121978	39122042	protein_coding	Rims2	intron	ENSMUSG00000037386	ProperStrand	43	2	-inf
chr12	110691641	110692205	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	chr9	78480360	78480540	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-4.7416
chr10	77059112	77059128	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	ProperStrand	20	chr1	89734597	89734718	protein_coding	Sag	intron	ENSMUSG00000056055	ProperStrand	125	1	-12.7776
chr15	82171035	82171088	protein_coding-noncoding	Fam109b	utr5	ENSMUSG00000049687	ProperStrand	1	chr12	78350926	78351022	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr1	55025257	55025353	LTR	RMER19B	ERVK	chr1RMER19B55025218	ProperStrand	1	chr9	40804021	40804082	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr2	69869926	69870390	DNA	Ricksha	MuDR	chr2Ricksha69869716	NonProperStrand	1	chr2	69868823	69869902	LTR	RLTR31_Mm	ERVK	chr2RLTR31_Mm69868687	NonProperStrand	1	1	-inf
chr2	120386565	120386591	protein_coding	Zfp106	intron	ENSMUSG00000027288	ProperStrand	14	chr2	5379307	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.4379
chr12	41605449	41605539	LINE	L1Md_F2	L1	chr12L1Md_F241604745	ProperStrand	1	chr12	41605556	41605656	LTR	MTB_Mm	MaLR	chr12MTB_Mm41605581	NonProperStrand	3	1	-inf
chr15	103241571	103241929	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	chr13	44869577	44869640	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.2541
chr5	110415679	110415738	SINE	B2_Mm2	B2	chr5B2_Mm2110415655	NonProperStrand	1	chr9	123461964	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	56630379	56630439	LTR	ETnERV2-int	ERVK	chr14ETnERV2-int56630331	NonProperStrand	1	chr14	56630486	56630551	LTR	ETnERV2-int	ERVK	chr14ETnERV2-int56630435	NonProperStrand	1	1	-inf
chr16	18314887	18314966	protein_coding	D16H22S680E	intron	ENSMUSG00000013539	ProperStrand	15	chr8	80825602	80825649	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-10.0920
chr4	115811456	115811487	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	chr1	36155104	36155166	protein_coding	Hs6st1	intron	ENSMUSG00000045216	NonProperStrand	39	1	-13.5661
chr13	44905772	44905829	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	chr11	3812403	3812425	protein_coding	Slc35e4	intron	ENSMUSG00000048807	ProperStrand	4	1	-14.5079
chr17	39847623	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	61407399	61407432	LTR	ORR1E	MaLR	chr9ORR1E61407403	ProperStrand	1	1	-inf
chr3	14691321	14691411	LINE	Lx2B	L1	chr3Lx2B14691222	NonProperStrand	1	chr3	14690948	14691048	LTR	RLTR25A	ERVK	chr3RLTR25A14690532	NonProperStrand	1	1	-inf
chr11	72922838	72922960	protein_coding	Itgae	intron	ENSMUSG00000005947	ProperStrand	12	chr9	123461835	123461867	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr19	16256043	16256126	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	chr4	149120031	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.4237
chrX	59058601	59058701	LINE	L1VL4	L1	chrXL1VL459057831	ProperStrand	1	chrX	59059632	59059722	LINE	L1VL4	L1	chrXL1VL459059174	ProperStrand	1	1	-inf
chr17	39847736	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	65582286	65582314	LTR	ORR1E-int	MaLR	chr18ORR1E-int65581952	NonProperStrand	3	1	-4.3512
chr14	122219848	122219948	SINE	B1_Mus1	Alu	chr14B1_Mus1122219821	ProperStrand	2	chr14	122219676	122219766	SINE	ID_B1	B4	chr14ID_B1122219685	ProperStrand	2	2	-inf
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr7	4145749	4145839	LTR	IAPEz-int	ERVK	chr7IAPEz-int4144938	NonProperStrand	67	1	-12.7230
chr17	39845998	39846098	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chrX	159538379	159538469	SINE	B3	B2	chrXB3159538279	ProperStrand	1	1	-inf
chrX	74235803	74235859	LINE	L1Md_F2	L1	chrXL1Md_F274235532	NonProperStrand	8	chr2	5379268	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.6062
chr6	60501288	60501304	LTR	RLTR45-int	ERVK	chr6RLTR45-int60500125	NonProperStrand	1	chr9	123461931	123461974	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	60462527	60462617	LINE	L1Md_T	L1	chr5L1Md_T60461701	ProperStrand	1	chr5	60462990	60463090	LTR	MTA_Mm-int	MaLR	chr5MTA_Mm-int60462616	ProperStrand	1	1	-inf
chr17	39847598	39847698	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	23825124	23825145	pseudogene	Gm4732	.	ENSMUSG00000083099	NonProperStrand	3	1	-4.3512
chr4	139419184	139420421	LTR	MTEb-int	MaLR	chr4MTEb-int139418588	ProperStrand	5	chr4	139420428	139420528	SINE	PB1D7	Alu	chr4PB1D7139420431	ProperStrand	5	5	-inf
chr18	46165869	46165959	LINE	L1Md_A	L1	chr18L1Md_A46163912	NonProperStrand	3	chr14	64412292	64412392	protein_coding	Xkr6	intron	ENSMUSG00000035067	ProperStrand	7	2	-inf
chr11	106158407	106158480	LTR	IAPEz-int	ERVK	chr11IAPEz-int106155485	ProperStrand	7	chr11	106158643	106158706	LTR	IAPLTR1a_Mm	ERVK	chr11IAPLTR1a_Mm106158560	ProperStrand	1	1	-inf
chr11	86969753	86969834	protein_coding	Trim37	intron	ENSMUSG00000018548	NonProperStrand	72	chr2	5379293	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.2010
chr18	35388309	35388357	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	chr11	43684727	43684785	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	2	-16.6274
chr6	23715536	23715626	protein_coding	Cadps2	intron	ENSMUSG00000017978	NonProperStrand	18	chr6	23706173	23706273	protein_coding	Cadps2	intron	ENSMUSG00000017978	ProperStrand	17	1	-16.9863
chr12	99817954	99818044	Low_complexity	GA-rich	Low_complexity	chr12GA-rich99817970	ProperStrand	1	chr12	99818152	99818252	SINE	B4A	B4	chr12B4A99818150	ProperStrand	1	1	-inf
chr17	84766992	84767071	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	chr7	109519971	109519993	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-7.8314
chr5	146261159	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	71359328	71359452	protein_coding	Metap1d	intron	ENSMUSG00000041921	ProperStrand	13	1	-8.1236
chr17	39846734	39846838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	173778932	173778960	Simple_repeat	(TCTA)n	Simple_repeat	chr2(TCTA)n173778930	ProperStrand	1	1	-inf
chr18	84857080	84857180	DNA	Charlie2b	MER1_type	chr18Charlie2b84857107	NonProperStrand	2	chr18	84854426	84854516	protein_coding	Cndp2	intron	ENSMUSG00000024644	NonProperStrand	19	2	-inf
chr11	70085151	70085241	LINE	L1M3c	L1	chr11L1M3c70085118	NonProperStrand	1	chr11	70031489	70031589	protein_coding	Slc16a13	intron	ENSMUSG00000044367	ProperStrand	2	1	-inf
chr7	142380853	142380876	LINE	Lx8	L1	chr7Lx8142380797	NonProperStrand	4	chr17	39847179	39847253	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr11	96799259	96800075	lincRNA	D030028A08Rik	intron	ENSMUSG00000078700	ProperStrand	59	chr11	96790896	96798775	protein_coding	Prr15l	intron	ENSMUSG00000047040	ProperStrand	27	2	-inf
chr17	39847338	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	116331344	116331468	protein_coding	Sass6	intron	ENSMUSG00000027959	NonProperStrand	2	1	-5.4040
chr9	22819718	22819771	LTR	RLTR20A	ERVK	chr9RLTR20A22819487	ProperStrand	1	chr9	22821892	22821968	LTR	RLTR25A	ERVK	chr9RLTR25A22821818	ProperStrand	1	1	-inf
chrX	165966490	165966590	LINE	L1Md_F2	L1	chrXL1Md_F2165966474	NonProperStrand	1	chrX	165966365	165966455	LINE	L1VL4	L1	chrXL1VL4165966058	ProperStrand	1	1	-inf
chr17	39846647	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	106733880	106733965	protein_coding	Vprbp	intron	ENSMUSG00000040325	NonProperStrand	3	1	-4.3017
chr4	126004182	126004282	SINE	B1_Mus2	Alu	chr4B1_Mus2126004125	NonProperStrand	1	chr4	126004000	126004090	SINE	B2_Mm2	B2	chr4B2_Mm2126003991	NonProperStrand	1	1	-inf
chr15	87726321	87726422	SINE	B1_Mus1	Alu	chr15B1_Mus187726316	NonProperStrand	1	chr4	62394774	62394807	SINE	RSINE1	B4	chr4RSINE162394758	NonProperStrand	1	1	-inf
chr17	22454591	22454645	LINE	L1_Mur3	L1	chr17L1_Mur322453798	NonProperStrand	1	chr11	22139973	22140037	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-inf
chr15	97614325	97614415	SINE	B1_Mur2	Alu	chr15B1_Mur297614274	ProperStrand	1	chr15	97614421	97614521	SINE	B2_Mm2	B2	chr15B2_Mm297614432	ProperStrand	1	1	-inf
chr7	89315345	89315445	LTR	MTA_Mm-int	MaLR	chr7MTA_Mm-int89314393	ProperStrand	1	chr7	89315514	89315604	LTR	MTA_Mm	MaLR	chr7MTA_Mm89315490	ProperStrand	1	1	-inf
chr16	22392779	22392813	protein_coding	Etv5	exon	ENSMUSG00000013089	ProperStrand	260	chr9	110281293	110281317	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-4.6897
chr11	54926763	54929154	Simple_repeat	(TC)n	Simple_repeat	chr11(TC)n54929109	NonProperStrand	3	chr11	54918655	54920778	protein_coding	Gm2a	intron	ENSMUSG00000000594	NonProperStrand	51	3	-inf
chr15	97227333	97227423	LTR	ORR1C1	MaLR	chr15ORR1C197227125	NonProperStrand	1	chr15	97227047	97227147	LTR	RMER15	ERVL	chr15RMER1597226993	ProperStrand	1	1	-inf
chr11	69756347	69756388	protein_coding	Slc2a4	utr3	ENSMUSG00000018566	ProperStrand	7	chr1	156052413	156052442	protein_coding	Zfp648	exon	ENSMUSG00000066797	ProperStrand	11	1	-21.2235
chr8	22172869	22172947	LINE	L1Md_F2	L1	chr8L1Md_F222171608	ProperStrand	2	chr13	23463538	23463610	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	1	-21.6660
chr1	82887499	82887604	protein_coding	Agfg1	intron	ENSMUSG00000026159	ProperStrand	65	chr8	46058774	46058800	protein_coding	Fat1	intron	ENSMUSG00000070047	NonProperStrand	46	2	-20.8400
chr2	152265590	152265658	protein_coding	6820408C15Rik	intron	ENSMUSG00000032680	ProperStrand	28	chr10	89699904	89699930	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-11.9806
chr12	76229897	76229975	protein_coding	Kcnh5	intron	ENSMUSG00000034402	NonProperStrand	68	chr16	27451984	27452018	protein_coding	Ccdc50	utr3	ENSMUSG00000038127	ProperStrand	26	1	-13.4651
chr3	153912124	153912203	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr7	127997949	127998002	protein_coding	Eef2k	intron	ENSMUSG00000035064	ProperStrand	6	1	-13.6284
chr1	36936162	36936229	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	chr14	27043783	27043839	protein_coding	Gm2135	intron	ENSMUSG00000092159	ProperStrand	34	1	-10.5453
chr10	67174040	67174074	LTR	ORR1D1	MaLR	chr10ORR1D167173982	NonProperStrand	1	chr2	91016317	91016341	protein_coding	Madd	exon	ENSMUSG00000040687	NonProperStrand	97	1	-inf
chr5	115489486	115489561	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr12	105475957	105476036	protein_coding	Serpina3g	utr5	ENSMUSG00000041481	ProperStrand	5	1	-14.3270
chr11	87230940	87230957	protein_coding	Tex14	intron	ENSMUSG00000010342	ProperStrand	45	chr9	40803994	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	2	-12.8041
chr2	156108466	156108510	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	96	chr3	96769038	96769099	protein_coding	Gja5	intron	ENSMUSG00000057123	ProperStrand	33	1	-12.2861
chr3	94886505	94886606	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	ProperStrand	13	chr8	119450378	119450468	protein_coding	Cenpn	intron	ENSMUSG00000031756	ProperStrand	4	1	-inf
chr1	168299287	168299399	LTR	MYSERV6-int	ERVK	chr1MYSERV6-int168299091	NonProperStrand	2	chr1	168299428	168299519	LTR	MYSERV6-int	ERVK	chr1MYSERV6-int168299338	NonProperStrand	2	2	-inf
chr13	74360559	74360615	protein_coding	Ahrr	intron	ENSMUSG00000021575	NonProperStrand	16	chrX	101082959	101083215	pseudogene	Gm9164	.	ENSMUSG00000082322	ProperStrand	6	1	-20.2004
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr2	91781377	91781442	protein_coding	Dgkz	intron	ENSMUSG00000040479	NonProperStrand	16	1	-9.2358
chr6	3201516	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	121389352	121389426	SINE	B2_Mm1a	B2	chr9B2_Mm1a121389242	NonProperStrand	9	1	-6.5801
chr17	70963674	70963764	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr3	8853933	8854033	protein_coding	Mrps28	intron	ENSMUSG00000040269	ProperStrand	70	1	-5.9040
chr11	75163349	75163376	protein_coding	Smyd4	intron	ENSMUSG00000018809	ProperStrand	11	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.0129
chr15	72218064	72218154	LTR	RMER6B	ERVK	chr15RMER6B72218013	NonProperStrand	2	chr8	83435172	83435272	Simple_repeat	(GAAA)n	Simple_repeat	chr8(GAAA)n83435194	NonProperStrand	2	2	-inf
chr5	33432065	33432083	LINE	Lx7	L1	chr5Lx733431406	NonProperStrand	1	chr13	23574078	23574207	protein_coding	Btn2a2	intron	ENSMUSG00000053216	ProperStrand	18	1	-inf
chr16	21218263	21218331	protein_coding	Ephb3	exon	ENSMUSG00000005958	ProperStrand	32	chr13	97190590	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.3591
chr11	106466615	106466643	protein_coding	Tex2	intron	ENSMUSG00000040548	ProperStrand	28	chr17	28204554	28205143	protein_coding	Tcp11	intron	ENSMUSG00000062859	NonProperStrand	4	1	-23.3794
chr1	84782930	84782976	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr19	32229616	32229708	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-8.6129
chr2	28913471	28913571	SINE	B2_Mm1t	B2	chr2B2_Mm1t28913441	NonProperStrand	3	chr2	28913376	28913466	SINE	B3	B2	chr2B328913273	NonProperStrand	3	3	-inf
chrX	101447829	101447933	LINE	Lx7	L1	chrXLx7101447139	ProperStrand	5	chrX	101448114	101448163	LTR	RLTR45	ERVK	chrXRLTR45101448057	ProperStrand	3	3	-inf
chr2	125745829	125747403	protein_coding	Galk2	intron	ENSMUSG00000027207	NonProperStrand	12	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-15.3814
chr8	84101967	84102036	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	chr9	65196631	65196691	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-9.1161
chr13	44847117	44847186	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	chr7	3706684	3706737	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	64	1	-8.6969
chr19	5796873	5796915	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr1	52929081	52929170	protein_coding	Hibch	intron	ENSMUSG00000041426	NonProperStrand	34	1	-5.5414
chr2	26021554	26021616	LINE	L1Md_F2	L1	chr2L1Md_F226021264	ProperStrand	1	chr17	39848007	39848080	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	4082172	4082272	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr3	105337688	105337778	protein_coding	Kcnd3	intron	ENSMUSG00000040896	ProperStrand	7	1	-12.0771
chr8	80823376	80823515	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr1	70036481	70036500	protein_coding	Spag16	intron	ENSMUSG00000053153	ProperStrand	27	1	-8.8901
chr17	39848197	39848228	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	89324575	89329395	SINE	ID_B1	B4	chr6ID_B189324584	NonProperStrand	1	1	-inf
chr11	86721601	86721653	LINE	Lx4A	L1	chr11Lx4A86721440	ProperStrand	3	chr17	39846376	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39846825	39846880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	53284413	53284517	LTR	MTC	MaLR	chr18MTC53284352	ProperStrand	3	1	-4.3017
chr1	41963981	41964071	SINE	MIRb	MIR	chr1MIRb41963841	ProperStrand	1	chr15	55191060	55191160	protein_coding	Col14a1	intron	ENSMUSG00000022371	NonProperStrand	9	1	-inf
chr17	39847551	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	22200269	22200306	LTR	BGLII	ERVK	chr8BGLII22200022	ProperStrand	1	1	-inf
chr8	53592323	53592350	LINE	L1Md_F3	L1	chr8L1Md_F353591614	ProperStrand	1	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr6	134276743	134276843	LINE	L1Md_T	L1	chr6L1Md_T134276724	NonProperStrand	1	chr6	134276992	134277082	LINE	L1Md_T	L1	chr6L1Md_T134276952	NonProperStrand	1	1	-inf
chr11	97824426	97824493	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	chr19	7536832	7536910	protein_coding	Rtn3	intron	ENSMUSG00000024758	NonProperStrand	24	1	-12.2951
chr2	147065411	147065512	lincRNA	Nkx2-2as	intron	ENSMUSG00000086509	ProperStrand	37	chr3	84896776	84896834	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-10.9081
chr17	39843031	39843064	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr10	121390889	121390952	protein_coding	Srgap1	intron	ENSMUSG00000020121	NonProperStrand	108	1	-4.2556
chr10	62879860	62879926	LTR	MTC	MaLR	chr10MTC62879784	NonProperStrand	17	chr13	119464575	119464643	protein_coding	Fgf10	intron	ENSMUSG00000021732	NonProperStrand	5	3	-20.5949
chr10	80632994	80633084	SINE	B1_Mus1	Alu	chr10B1_Mus180632952	ProperStrand	4	chr10	80633108	80633208	SINE	B3	B2	chr10B380633087	NonProperStrand	4	4	-inf
chr12	112983544	112983644	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	NonProperStrand	45	chr17	33952456	33952546	protein_coding	Kank3	intron	ENSMUSG00000042099	NonProperStrand	107	2	-17.8576
chr16	73673334	73673359	LTR	ORR1A4-int	MaLR	chr16ORR1A4-int73673300	NonProperStrand	1	chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	133062919	133063009	SINE	B1F2	Alu	chr4B1F2133062907	ProperStrand	2	chr4	133063080	133063180	SINE	RSINE1	B4	chr4RSINE1133063086	ProperStrand	2	2	-inf
chr19	33117126	33117178	LINE	L1MA5A	L1	chr19L1MA5A33115732	NonProperStrand	10	chr17	56717745	56717812	protein_coding	Safb2	intron	ENSMUSG00000042625	ProperStrand	14	1	-18.3146
chr16	84846374	84846406	protein_coding	Gabpa	exon	ENSMUSG00000008976	ProperStrand	42	chr15	77122914	77122961	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	1	-10.9704
chr18	63778277	63779876	LTR	ORR1D1-int	MaLR	chr18ORR1D1-int63777100	ProperStrand	6	chr9	123461957	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr2	133315159	133315259	LINE	L1_Mur3	L1	chr2L1_Mur3133314294	ProperStrand	1	chr2	133315625	133315715	LINE	Lx7	L1	chr2Lx7133315496	NonProperStrand	1	1	-inf
chr7	109771407	109771497	LINE	L1Md_A	L1	chr7L1Md_A109770872	ProperStrand	4	chr7	123018961	123019061	protein_coding	Sox6	intron	ENSMUSG00000051910	ProperStrand	19	1	-20.0437
chr9	123461983	123462112	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	28071470	28071488	protein_coding	Opcml	intron	ENSMUSG00000062257	ProperStrand	17	1	-3.3592
chr17	39843671	39843711	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr18	61715354	61715426	protein_coding	Csnk1a1	utr5	ENSMUSG00000024576	NonProperStrand	46	1	-3.0334
chr11	72459031	72459047	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	chr8	61229846	61229872	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-8.4888
chr17	39847642	39847673	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	50777984	50778111	Simple_repeat	(GAA)n	Simple_repeat	chr10(GAA)n50777969	ProperStrand	1	1	-inf
chr13	49678068	49688618	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	chr13	49678266	49682255	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	13	2	-inf
chr18	27572565	27572584	SINE	B3A	B2	chr18B3A27572508	ProperStrand	1	chr9	65659460	65659591	protein_coding	Zfp609	intron	ENSMUSG00000040524	NonProperStrand	165	1	-inf
chr15	102717213	102717267	LINE	Lx	L1	chr15Lx102717183	ProperStrand	1	chr4	53860739	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-inf
chr17	39846823	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	12928290	12928365	protein_coding	C1ql3	intron	ENSMUSG00000049630	NonProperStrand	3	1	-4.3017
chr16	22404946	22404966	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr8	107059685	107059754	protein_coding	Car7	intron	ENSMUSG00000031883	NonProperStrand	3	1	-15.4562
chr14	27175052	27175152	LTR	MTA_Mm	MaLR	chr14MTA_Mm27174925	ProperStrand	1	chr14	27175345	27175435	LTR	MTD	MaLR	chr14MTD27175334	NonProperStrand	1	1	-inf
chr13	43478864	43478954	protein_coding	Sirt5	intron	ENSMUSG00000054021	ProperStrand	2	chr13	43495346	43495446	protein_coding	Nol7	intron	ENSMUSG00000063200	NonProperStrand	1	1	-inf
chr4	155294232	155294301	LTR	ETnERV2-int	ERVK	chr4ETnERV2-int155293136	NonProperStrand	3	chr4	155301040	155301093	LTR	MERVL-int	ERVL	chr4MERVL-int155299760	NonProperStrand	5	1	-inf
chr5	77336519	77336536	SINE	B2_Mm1t	B2	chr5B2_Mm1t77336385	ProperStrand	2	chr9	80203318	80203448	protein_coding	Impg1	intron	ENSMUSG00000032343	NonProperStrand	24	2	-inf
chr2	32961915	32962060	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	chr8	123944305	123946524	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	2	-5.5483
chr3	89094358	89094864	DNA	MER2	MER2_type	chr3MER289094407	ProperStrand	4	chr3	89094249	89094349	SINE	B1_Mus2	Alu	chr3B1_Mus289094245	NonProperStrand	6	4	-inf
chr14	60228416	60228484	LTR	ORR1D2	MaLR	chr14ORR1D260228430	NonProperStrand	1	chr14	60225859	60225899	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n60225862	NonProperStrand	1	1	-inf
chr5	36796413	36796512	lincRNA	2210406O10Rik	intron	ENSMUSG00000039563	ProperStrand	73	chr13	97190561	97190586	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.7433
chr11	109011646	109011692	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr6	49236492	49236558	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-3.5282
chr18	34350074	34350164	LINE	Lx5	L1	chr18Lx534350074	ProperStrand	3	chr18	34349937	34350037	LTR	RLTR25B	ERVK	chr18RLTR25B34349598	ProperStrand	4	3	-inf
chr16	33810930	33810946	protein_coding	Muc13	intron	ENSMUSG00000022824	ProperStrand	3	chr8	125997353	125997471	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-13.2835
chr10	77116453	77116524	LTR	ORR1A2	MaLR	chr10ORR1A277116295	NonProperStrand	1	chr16	11193609	11193690	protein_coding	Rsl1d1	exon	ENSMUSG00000005846	ProperStrand	13	1	-inf
chr13	112578187	112578303	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr19	10865382	10871862	protein_coding	Cd6	intron	ENSMUSG00000024670	ProperStrand	7	2	-13.8033
chr6	63253575	63991766	protein_coding	Grid2	intron	ENSMUSG00000071424	NonProperStrand	44	chr6	63255768	63942025	protein_coding	Grid2	intron	ENSMUSG00000071424	ProperStrand	24	4	-inf
chr4	94584354	94584408	protein_coding	4930579C15Rik	intron	ENSMUSG00000028575	ProperStrand	21	chr15	86216394	86216438	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-10.9169
chr7	118109157	118109986	protein_coding	Mrvi1	intron	ENSMUSG00000005611	ProperStrand	87	chr4	150847499	150847599	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-7.4808
chr9	31358685	31358781	LINE	L1_Mus2	L1	chr9L1_Mus231353545	NonProperStrand	7	chr5	149631337	149631395	LTR	MLT1A0	MaLR	chr5MLT1A0149631280	ProperStrand	1	1	-inf
chr13	107800227	107800317	protein_coding	Kif2a	intron	ENSMUSG00000021693	ProperStrand	61	chr15	34238818	34238918	protein_coding	Matn2	intron	ENSMUSG00000022324	ProperStrand	45	1	-12.5696
chr10	75531546	75531672	protein_coding	Slc5a4b	intron	ENSMUSG00000020226	NonProperStrand	34	chr15	81909498	81909520	protein_coding	Mei1	intron	ENSMUSG00000068117	ProperStrand	63	1	-13.0724
chr5	113817381	113817399	LTR	MERVL-int	ERVL	chr5MERVL-int113813487	NonProperStrand	3	chr16	28928869	28928989	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	1	-17.0163
chr7	97371130	97371148	SINE	PB1D10	Alu	chr7PB1D1097371114	NonProperStrand	1	chr4	53573584	53573707	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	1	-inf
chr11	103000942	103001020	protein_coding	Hexim2	utr3	ENSMUSG00000043372	NonProperStrand	23	chr1	95158801	95158820	protein_coding	Sned1	intron	ENSMUSG00000047793	ProperStrand	3	1	-19.7792
chr12	54860639	54860751	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-6.1835
chrX	52522504	52522549	LINE	L1Md_F	L1	chrXL1Md_F52520538	NonProperStrand	3	chr9	123462080	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr17	39846950	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	118402776	118402867	LTR	ORR1B2	MaLR	chr9ORR1B2118402609	NonProperStrand	1	1	-inf
chr14	21721543	21721633	SINE	B4A	B4	chr14B4A21721528	NonProperStrand	1	chr14	21721829	21721929	SINE	PB1D7	Alu	chr14PB1D721721815	ProperStrand	1	1	-inf
chr11	69851376	69851445	protein_coding	Dlg4	intron	ENSMUSG00000020886	NonProperStrand	14	chr2	41296112	41296128	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-15.0877
chr17	39848150	39848250	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	58422164	58422254	protein_coding	Fam194a	intron	ENSMUSG00000070471	NonProperStrand	6	1	-5.7734
chr7	35607835	35607934	LTR	MTC	MaLR	chr7MTC35607626	ProperStrand	1	chr9	123462141	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	69802135	69803468	LTR	MTE-int	MaLR	chr8MTE-int69803319	NonProperStrand	1	chr1	17070507	17070650	protein_coding	Jph1	intron	ENSMUSG00000042686	ProperStrand	39	1	-inf
chr3	75621450	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr13	97190597	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.9665
chr16	39462754	39462774	LINE	L1_Mur2	L1	chr16L1_Mur239462551	NonProperStrand	2	chr8	117363518	117363658	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	2	-inf
chr8	117363584	117363703	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr11	46843381	46843398	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	49	1	-6.5236
chr17	39847659	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	72635450	72635467	protein_coding	Smarcal1	intron	ENSMUSG00000039354	ProperStrand	4	1	-3.7035
chr3	83375359	83375377	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n83375276	NonProperStrand	7	chr2	44766647	44766742	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	85	1	-15.7510
chr17	39846593	39847147	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr17	39847063	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	5	-inf
chr15	58928013	58928088	SINE	B4A	B4	chr15B4A58927902	NonProperStrand	1	chr13	44869598	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr16	35981617	35981660	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr11	88477333	88477413	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-4.2020
chr18	77954207	77954742	SINE	B1_Mus1	Alu	chr18B1_Mus177954205	ProperStrand	4	chr18	77951334	77954192	protein_coding	8030462N17Rik	intron	ENSMUSG00000047466	NonProperStrand	40	4	-inf
chr16	32670848	32671303	protein_coding	Tnk2	intron	ENSMUSG00000022791	ProperStrand	153	chr3	108442412	108442473	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	57	1	-10.2471
chr4	107409044	107409175	lincRNA	1700047F07Rik	intron	ENSMUSG00000085549	ProperStrand	49	chr3	138477211	138477238	protein_coding	Tspan5	intron	ENSMUSG00000028152	NonProperStrand	34	1	-13.5803
chr4	43492777	43492925	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr4	43492925	43493064	SINE	B3	B2	chr4B343492960	NonProperStrand	660	356	-inf
chr12	110618362	110618464	LINE	Lx8	L1	chr12Lx8110618312	ProperStrand	3	chr12	110617942	110617965	LTR	ERVL-int	ERVL	chr12ERVL-int110617103	ProperStrand	9	1	-21.6921
chr17	50420136	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	28	1	-11.4853
chr17	33876379	33876420	LTR	IAPEz-int	ERVK	chr17IAPEz-int33875433	ProperStrand	5	chr5	38530009	38530072	protein_coding	Nsg1	exon	ENSMUSG00000029126	ProperStrand	32	2	-20.2664
chr6	3201466	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	31531227	31531309	protein_coding	Pde9a	intron	ENSMUSG00000041119	ProperStrand	48	1	-3.2972
chr9	123461822	123462007	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	2	-4.0153
chr1	88467461	88467481	protein_coding	Pde6d	intron	ENSMUSG00000026239	NonProperStrand	17	chr4	84661432	84661549	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	1	-14.1117
chr12	80246398	80246470	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr5	100049880	100049942	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	NonProperStrand	55	1	-10.0502
chr8	114758237	114758347	SINE	B4A	B4	chr8B4A114758079	ProperStrand	1	chr9	123461882	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	28747275	28747303	protein_coding	Srpk1	intron	ENSMUSG00000004865	NonProperStrand	24	chr19	29014288	29014337	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	59	1	-13.9164
chr19	9209835	9209935	lincRNA	Gm9750	exon	ENSMUSG00000024658	ProperStrand	3	chr19	9204518	9204608	protein_coding	Asrgl1	intron	ENSMUSG00000024654	NonProperStrand	1	1	-inf
chr1	24770327	24770377	protein_coding	Lmbrd1	intron	ENSMUSG00000073725	ProperStrand	48	chr10	110938687	110938727	protein_coding	Gm5176	utr3	ENSMUSG00000092020	ProperStrand	17	1	-15.0279
chr6	108242127	108242225	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr4	57722458	57722498	protein_coding	Palm2	exon	ENSMUSG00000090053	ProperStrand	22	1	-10.4586
chr11	77370887	77370923	protein_coding	Taok1	intron	ENSMUSG00000017291	NonProperStrand	17	chr11	77356454	77356500	pseudogene	Gm12734	.	ENSMUSG00000081451	ProperStrand	1	1	-inf
chr11	3139083	3139183	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	73	chr2	44861520	44861610	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	1	-12.3486
chr14	30572324	30573415	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n30572455	ProperStrand	3	chr5	17776747	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-16.4573
chr17	39846462	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	21286383	21286416	LTR	ORR1D1	MaLR	chr19ORR1D121286151	ProperStrand	1	1	-inf
chr9	61412493	61412923	SINE	B1_Mur3	Alu	chr9B1_Mur361412810	NonProperStrand	3	chr9	61412928	61413028	SINE	B4	B4	chr9B461412948	NonProperStrand	3	3	-inf
chr15	27486679	27486821	protein_coding	Ank	intron	ENSMUSG00000022265	ProperStrand	72	chr19	12901515	12901532	protein_coding	Lpxn	intron	ENSMUSG00000024696	ProperStrand	3	1	-18.0480
chr4	139338097	139338120	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	chr11	74905429	74905508	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-10.0069
chr3	20339963	20339982	LINE	L1Md_F2	L1	chr3L1Md_F220339289	NonProperStrand	1	chr17	39847451	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	117219164	117219274	LINE	L1Md_A	L1	chr14L1Md_A117216145	NonProperStrand	1	chr14	117187256	117187292	LINE	L1VL2	L1	chr14L1VL2117185496	ProperStrand	1	1	-inf
chr17	39848163	39848253	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	56035787	56035887	protein_coding	Rg9mtd1	intron	ENSMUSG00000044763	ProperStrand	14	1	-4.0485
chr10	37989464	37989564	LINE	L1Md_Gf	L1	chr10L1Md_Gf37989389	NonProperStrand	1	chr10	37989246	37989336	Simple_repeat	(GAA)n	Simple_repeat	chr10(GAA)n37989244	ProperStrand	1	1	-inf
chr18	12909971	12912800	protein_coding	Cabyr	intron	ENSMUSG00000024430	NonProperStrand	6	chr18	12911159	12914588	protein_coding	Osbpl1a	utr3	ENSMUSG00000044252	ProperStrand	48	2	-inf
chr2	13607226	13607247	protein_coding	St8sia6	intron	ENSMUSG00000003418	NonProperStrand	14	chr12	79351263	79351299	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-9.8594
chr17	9205652	9205742	LTR	RLTR20B3	ERVK	chr17RLTR20B39205580	ProperStrand	1	chr17	9205468	9205568	SINE	B1_Mus1	Alu	chr17B1_Mus19205462	ProperStrand	1	1	-inf
chr1	38446154	38446254	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	chr1	36735169	36735259	protein_coding	Fam178b	intron	ENSMUSG00000046337	NonProperStrand	23	1	-11.9223
chr5	45716267	45716306	LINE	L1_Mus4	L1	chr5L1_Mus445715201	NonProperStrand	1	chr17	39847636	39847665	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847678	39847778	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	49797697	49797789	SINE	B1_Mus2	Alu	chr11B1_Mus249797689	NonProperStrand	1	1	-inf
chr13	70844722	70844812	LINE	Lx9	L1	chr13Lx970844360	ProperStrand	1	chr13	70844862	70844962	LINE	Lx9	L1	chr13Lx970844839	NonProperStrand	1	1	-inf
chr15	98744831	98744881	protein_coding	Lmbr1l	intron	ENSMUSG00000022999	ProperStrand	55	chr13	44869578	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.6593
chr4	115811453	115811471	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	chr9	43041110	43041138	protein_coding	Oaf	intron	ENSMUSG00000032014	ProperStrand	13	2	-inf
chr11	88493874	88493958	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	chr5	107907240	107907933	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-4.7417
chr8	86028084	86028146	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int86028014	ProperStrand	2	chr15	53159281	53159370	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	2	-inf
chr6	91742052	91742150	protein_coding	Grip2	intron	ENSMUSG00000030098	NonProperStrand	217	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-9.2239
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr2	163074767	163075654	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-6.9744
chr10	127064284	127064374	SINE	B1_Mur2	Alu	chr10B1_Mur2127064201	ProperStrand	10	chr10	127064375	127064606	SINE	B2_Mm1t	B2	chr10B2_Mm1t127064355	ProperStrand	1	1	-inf
chr17	39848162	39848304	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	56101058	56101074	protein_coding	Dhrs4	intron	ENSMUSG00000022210	NonProperStrand	8	1	-5.1688
chr4	134004976	134005044	antisense	1700021N21Rik	.	ENSMUSG00000087343	ProperStrand	10	chr6	33839061	33839114	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-10.4587
chr17	39846694	39846748	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	41996307	42000306	SINE	B4A	B4	chr9B4A42000195	NonProperStrand	1	1	-inf
chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-10.0480
chr13	104748901	104748991	LINE	L2c	L2	chr13L2c104748926	ProperStrand	1	chr13	104748802	104748902	LTR	MT2A	ERVL	chr13MT2A104748770	ProperStrand	1	1	-inf
chr5	122460130	122460146	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	chr8	124353728	124353804	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-5.3677
chr15	99132250	99140440	protein_coding-noncoding	Prpf40b	utr5	ENSMUSG00000023007	ProperStrand	4	chr15	99132124	99133171	protein_coding	Prpf40b	intron	ENSMUSG00000023007	ProperStrand	26	4	-inf
chr6	94254734	94254791	SINE	B2_Mm1a	B2	chr6B2_Mm1a94254727	ProperStrand	1	chr8	124832439	124832505	protein_coding	Zfpm1	intron	ENSMUSG00000049577	ProperStrand	4	1	-inf
chr14	66090191	66090281	LTR	MLT1E1	MaLR	chr14MLT1E166090199	NonProperStrand	1	chr14	66089952	66090052	LTR	MTEb	MaLR	chr14MTEb66089857	ProperStrand	1	1	-inf
chr1	179202067	179202095	LTR	RLTR13C2	ERVK	chr1RLTR13C2179201480	NonProperStrand	1	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-inf
chr14	11611191	11611258	antisense	Gm16542	.	ENSMUSG00000089833	ProperStrand	103	chr14	11611606	11611669	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-6.7989
chr17	70963741	70963827	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	174279755	174279831	protein_coding	Tubb1	intron	ENSMUSG00000016255	NonProperStrand	27	1	-7.8016
chr4	87969030	87969064	protein_coding	BC057079	intron	ENSMUSG00000038368	NonProperStrand	76	chr8	87492272	87492340	protein_coding	Rnaseh2a	intron	ENSMUSG00000052926	NonProperStrand	82	1	-10.9188
chr10	70170086	70170134	DNA	URR1A	MER1_type	chr10URR1A70169985	ProperStrand	1	chr9	56223575	56223687	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-inf
chr6	139257589	139257610	SINE	B4	B4	chr6B4139257524	ProperStrand	1	chr16	4962901	4963015	protein_coding	Anks3	intron	ENSMUSG00000022515	ProperStrand	31	1	-inf
chrX	57948649	57948717	antisense	Gm14661	.	ENSMUSG00000067835	NonProperStrand	15	chr13	97190545	97190580	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.8902
chr14	21838519	21840419	protein_coding	Vcl	utr5	ENSMUSG00000021823	ProperStrand	63	chr1	36209056	36209146	protein_coding	Uggt1	intron	ENSMUSG00000037470	ProperStrand	31	1	-13.2609
chr6	25890291	25890381	LINE	L1_Mus3	L1	chr6L1_Mus325890234	NonProperStrand	1	chr6	25890622	25890722	Simple_repeat	(TTC)n	Simple_repeat	chr6(TTC)n25890604	ProperStrand	1	1	-inf
chr17	39847448	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	47310468	47310703	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n47310283	ProperStrand	11	4	-7.7182
chr15	37771087	37771111	LTR	RNERVK23-int	ERVK	chr15RNERVK23-int37770883	ProperStrand	1	chr15	37742038	37742165	SINE	B3A	B2	chr15B3A37742044	NonProperStrand	1	1	-inf
chr10	61468379	61468479	LINE	L1MEc	L1	chr10L1MEc61468271	NonProperStrand	1	chr10	61468084	61468174	SINE	B3	B2	chr10B361468102	NonProperStrand	1	1	-inf
chr3	58419349	58419423	LTR	RMER21B	ERV1	chr3RMER21B58419290	NonProperStrand	1	chr3	58418934	58419012	SINE	PB1D10	Alu	chr3PB1D1058418954	NonProperStrand	1	1	-inf
chr12	6131516	6131535	LTR	MER74A	ERVL	chr12MER74A6131262	ProperStrand	2	chr13	17985923	17985965	protein_coding	Rala	intron	ENSMUSG00000008859	ProperStrand	21	1	-20.6625
chr3	6930306	6930396	LINE	Lx9	L1	chr3Lx96930204	NonProperStrand	1	chr3	6930723	6930823	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n6930728	ProperStrand	1	1	-inf
chr14	118604326	118604373	LTR	MLT1A	MaLR	chr14MLT1A118604263	ProperStrand	1	chr5	124577127	124578459	protein_coding	Pitpnm2	intron	ENSMUSG00000029406	ProperStrand	10	1	-inf
chr17	39846847	39846968	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	26676484	26676519	Simple_repeat	(CA)n	Simple_repeat	chr17(CA)n26676380	ProperStrand	1	1	-inf
chr5	121435066	121435483	protein_coding	Rph3a	intron	ENSMUSG00000029608	NonProperStrand	86	chr5	148315311	148315328	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-10.7455
chr10	127463741	127463841	protein_coding-noncoding	Prim1	utr5	ENSMUSG00000025395	ProperStrand	5	chr10	127463648	127463738	protein_coding	Prim1	intron	ENSMUSG00000025395	ProperStrand	11	1	-21.8628
chr17	39847396	39847425	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	149398684	149398723	Low_complexity	AT_rich	Low_complexity	chr4AT_rich149398683	NonProperStrand	1	1	-inf
chr9	117709713	117709730	LTR	ORR1E	MaLR	chr9ORR1E117709582	NonProperStrand	6	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.1685
chr8	80704749	80705236	LINE	L1Md_F2	L1	chr8L1Md_F280704175	NonProperStrand	1	chr9	15326530	15326561	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-inf
chr11	67857526	67857594	protein_coding	Stx8	intron	ENSMUSG00000020903	NonProperStrand	8	chr16	32360276	32360354	protein_coding	Ubxn7	intron	ENSMUSG00000053774	ProperStrand	53	2	-23.2431
chr1	115028759	115028849	LINE	Lx2	L1	chr1Lx2115028312	NonProperStrand	1	chr1	115029335	115029435	LTR	RLTR26	ERVK	chr1RLTR26115029045	ProperStrand	1	1	-inf
chrX	23220360	23220471	LINE	L1_Mm	L1	chrXL1_Mm23219722	NonProperStrand	5	chr17	39847692	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr5	146261078	146261100	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	38051860	38051934	protein_coding	Stk32b	intron	ENSMUSG00000029123	NonProperStrand	34	1	-6.1779
chr9	69989682	69995513	Other	RMER1B	Other	chr9RMER1B69995068	NonProperStrand	2	chr9	69989572	69989662	protein_coding	Fam81a	utr5	ENSMUSG00000032224	NonProperStrand	4	2	-inf
chr9	88453875	88456709	protein_coding	Zfp949	intron	ENSMUSG00000032425	NonProperStrand	42	chr9	88480697	88482249	protein_coding	Trim43a	intron	ENSMUSG00000067399	NonProperStrand	40	2	-inf
chr1	80725041	80725141	protein_coding	Dock10	intron	ENSMUSG00000038608	ProperStrand	6	chr4	57207802	57207892	protein_coding	Ptpn3	intron	ENSMUSG00000038764	ProperStrand	95	1	-15.8894
chr2	5379316	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr3	96723557	96723574	protein_coding	Gja5	intron	ENSMUSG00000057123	ProperStrand	33	1	-5.7120
chr10	44489886	44489955	LTR	LTR85c	Gypsy?	chr10LTR85c44489466	NonProperStrand	1	chr10	44490704	44490746	LTR	MTD	MaLR	chr10MTD44490522	NonProperStrand	1	1	-inf
chr15	82346029	82346122	LTR	MMTV-int	ERVK	chr15MMTV-int82345264	NonProperStrand	1	chr17	39847160	39847220	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	92931445	92931535	protein_coding	Scarb2	intron	ENSMUSG00000029426	NonProperStrand	20	chr9	40195588	40195657	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-10.2994
chr1	178999125	178999201	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr15	79527375	79527458	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	NonProperStrand	156	2	-11.1202
chr17	39847990	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	123374415	123374788	Simple_repeat	(GA)n	Simple_repeat	chr4(GA)n123374714	NonProperStrand	2	1	-5.4040
chr11	99018134	99018234	LTR	LTR33A	ERVL	chr11LTR33A99018066	NonProperStrand	5	chr11	99018250	99018340	SINE	B3	B2	chr11B399018271	ProperStrand	2	1	-23.2669
chr17	39848778	39848823	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	128926772	128928902	protein_coding	Polr1b	utr5	ENSMUSG00000027395	NonProperStrand	6	1	-6.0469
chr11	6104496	6104534	SINE	B1_Mur1	Alu	chr11B1_Mur16104411	NonProperStrand	1	chr11	6099019	6099127	protein_coding	Nudcd3	intron	ENSMUSG00000053838	ProperStrand	33	1	-inf
chr17	39847361	39847378	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	19590758	19590856	protein_coding	Irf2bp1	exon	ENSMUSG00000044030	NonProperStrand	2	1	-5.4040
chr3	27212816	27212906	LINE	Lx	L1	chr3Lx27212057	ProperStrand	1	chr17	39846674	39846773	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	104395276	104395351	LINE	Lx	L1	chr8Lx104395088	ProperStrand	6	chr6	49236487	49236552	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-14.0901
chr8	79661379	79661479	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	chr3	88580021	88581050	pseudogene	5830417I10Rik	.	ENSMUSG00000078684	ProperStrand	52	1	-10.6096
chr1	178992438	178992524	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr16	16312861	16312937	protein_coding	Dnm1l	utr3	ENSMUSG00000022789	ProperStrand	30	1	-10.2104
chr6	131363124	131363177	LTR	MTEa	MaLR	chr6MTEa131362934	NonProperStrand	1	chr6	65568947	65568965	protein_coding	Tnip3	intron	ENSMUSG00000044162	ProperStrand	1	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr9	44150078	44150104	protein_coding	Hmbs	intron	ENSMUSG00000032126	ProperStrand	11	1	-15.2916
chr8	120946127	120946145	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	chr7	79417889	79417979	protein_coding	Mctp2	intron	ENSMUSG00000032776	NonProperStrand	86	1	-10.3335
chr17	39846649	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	101214408	101214466	SINE	MIRb	MIR	chrXMIRb101214355	ProperStrand	1	1	-inf
chr1	135587127	135587227	SINE	PB1D7	Alu	chr1PB1D7135587128	ProperStrand	3	chr1	135587287	135587377	Simple_repeat	(TTTC)n	Simple_repeat	chr1(TTTC)n135587303	NonProperStrand	3	3	-inf
chr2	103062160	103062207	SINE	B4	B4	chr2B4103062071	ProperStrand	1	chr6	94076123	94076221	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-inf
chr15	80918757	80918857	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	chr11	87457035	87457094	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-6.6009
chrX	144050479	144050579	LTR	RLTR22_Mur	ERVK	chrXRLTR22_Mur144050357	ProperStrand	1	chrX	144050973	144051063	LTR	RLTR22_Mur	ERVK	chrXRLTR22_Mur144050667	ProperStrand	1	1	-inf
chr12	19852679	19852753	SINE	RSINE1	B4	chr12RSINE119852658	NonProperStrand	3	chr12	19743107	19743157	Unknown	MurSatRep1	Unknown	chr12MurSatRep119743031	ProperStrand	2	2	-inf
chr17	39846647	39847000	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	85067669	85082271	protein_coding	Abcg5	intron	ENSMUSG00000040505	ProperStrand	18	3	-3.4595
chr17	21941509	21941545	LTR	IAPLTR3-int	ERVK	chr17IAPLTR3-int21938375	NonProperStrand	6	chrX	56356114	56356132	protein_coding	Fgf13	intron	ENSMUSG00000031137	ProperStrand	21	1	-19.2239
chr6	82723532	82723641	protein_coding	Hk2	intron	ENSMUSG00000000628	ProperStrand	54	chr17	75527458	75527480	protein_coding	Ltbp1	intron	ENSMUSG00000001870	ProperStrand	11	1	-15.6981
chr6	108276899	108276984	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr13	81566942	81566969	protein_coding	Gpr98	intron	ENSMUSG00000069170	ProperStrand	77	1	-7.9324
chr17	39843041	39843069	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr16	44128636	44128715	protein_coding	Atp6v1a	intron	ENSMUSG00000052459	ProperStrand	36	1	-6.3927
chr17	39847187	39847248	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	67974697	67974771	LTR	RLTR21	ERVK	chr17RLTR2167973592	ProperStrand	2	1	-6.5615
chr2	6540024	6540042	protein_coding	Celf2	intron	ENSMUSG00000002107	NonProperStrand	24	chr11	3242650	3243185	protein_coding	Pik3ip1	utr3	ENSMUSG00000034614	ProperStrand	11	1	-17.4015
chr19	9878199	9878392	LINE	Lx2A1	L1	chr19Lx2A19877968	NonProperStrand	7	chr19	9878410	9883779	LINE	Lx3A	L1	chr19Lx3A9883167	NonProperStrand	10	6	-inf
chr17	39847655	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	19932083	19932182	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n19932019	ProperStrand	4	1	-3.7035
chr17	63947555	63947690	LTR	RMER6C	ERVK	chr17RMER6C63947448	ProperStrand	1	chr2	71436651	71436672	LTR	ORR1E	MaLR	chr2ORR1E71436575	NonProperStrand	1	1	-inf
chr15	94200577	94200596	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	chr10	63245908	63245995	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-10.4136
chr3	34034002	34034117	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	1	-11.5320
chrX	87238364	87238391	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr11	3259357	3262507	protein_coding	Limk2	intron	ENSMUSG00000020451	ProperStrand	23	2	-17.8428
chr11	9868844	9868934	LTR	ORR1D1-int	MaLR	chr11ORR1D1-int9868809	ProperStrand	1	chr11	9869029	9869129	SINE	B1_Mus1	Alu	chr11B1_Mus19869023	ProperStrand	1	1	-inf
chr7	123589191	123589291	SINE	B1_Mus2	Alu	chr7B1_Mus2123589190	ProperStrand	1	chr7	123588978	123589068	SINE	MIR	MIR	chr7MIR123589003	NonProperStrand	1	1	-inf
chr1	161036093	161036114	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr8	31149863	31149891	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	1	-12.1931
chr11	75748741	75748831	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	chr4	131811036	131811136	protein_coding	Gmeb1	intron	ENSMUSG00000028901	NonProperStrand	4	1	-15.7900
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr19	7362185	7362241	protein_coding	Mark2	intron	ENSMUSG00000024969	ProperStrand	26	1	-8.4852
chr12	70623792	70623882	LTR	MLT1G	MaLR	chr12MLT1G70623600	NonProperStrand	1	chr12	70623952	70624052	SINE	B4	B4	chr12B470623950	ProperStrand	1	1	-inf
chr17	70856706	70856754	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	13745282	13745341	protein_coding	Runx1t1	intron	ENSMUSG00000006586	ProperStrand	16	1	-8.8669
chr16	10298382	10298434	protein_coding	Emp2	intron	ENSMUSG00000022505	NonProperStrand	4	chr3	32362680	32362740	protein_coding	Pik3ca	utr3	ENSMUSG00000027665	NonProperStrand	80	1	-17.1917
chr7	113279487	113279503	LINE	Lx5	L1	chr7Lx5113278089	NonProperStrand	8	chr9	123462036	123462058	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr9	115280949	115281006	LINE	Lx	L1	chr9Lx115280880	ProperStrand	1	chr17	39847539	39847606	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	10896207	10896259	protein_coding	Cd6	intron	ENSMUSG00000024670	NonProperStrand	8	chr9	123462133	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr17	70963685	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr5	5664121	5664187	protein_coding	A330021E22Rik	utr5	ENSMUSG00000040473	ProperStrand	5	1	-11.3439
chr16	21849180	21849204	LINE	L1MB8	L1	chr16L1MB821849121	NonProperStrand	1	chr17	39847659	39847756	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	80543665	80543692	protein_coding	Thop1	intron	ENSMUSG00000004929	NonProperStrand	9	chr10	53348607	53348732	protein_coding	Mcm9	intron	ENSMUSG00000058298	ProperStrand	11	1	-19.5805
chr13	112578216	112578297	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr7	141546527	141546602	protein_coding	D7Ertd443e	intron	ENSMUSG00000030994	NonProperStrand	96	1	-3.3325
chr6	88269262	88269347	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	chr7	19696304	19696377	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-8.5435
chr15	34515749	34515828	protein_coding	Nipal2	intron	ENSMUSG00000038879	NonProperStrand	22	chr2	90983939	90983982	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	1	-13.0911
chr1	114525589	114525689	LINE	L1Md_F2	L1	chr1L1Md_F2114525386	NonProperStrand	1	chr1	114525890	114525980	LTR	MT2A	ERVL	chr1MT2A114525876	NonProperStrand	1	1	-inf
chr4	118241748	118241820	protein_coding	Wdr65	intron	ENSMUSG00000028730	ProperStrand	288	chr14	27435024	27435089	protein_coding	Fam116a	intron	ENSMUSG00000040818	ProperStrand	34	1	-10.0250
chr6	28480366	28480386	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr16	38450415	38450445	protein_coding	Adprh	exon	ENSMUSG00000002844	ProperStrand	17	1	-9.0728
chr13	44738563	44738662	LTR	ORR1D1	MaLR	chr13ORR1D144738372	ProperStrand	3	chr13	44743977	44744039	Low_complexity	GA-rich	Low_complexity	chr13GA-rich44743865	ProperStrand	2	1	-20.2824
chr6	92186849	92186943	LTR	ORR1A2	MaLR	chr6ORR1A292186685	ProperStrand	1	chr2	5379281	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr12	74839048	74839064	protein_coding	Prkch	intron	ENSMUSG00000021108	ProperStrand	5	chr15	72881603	72881632	protein_coding	Trappc9	intron	ENSMUSG00000047921	ProperStrand	319	1	-13.8441
chr11	80261095	80261133	protein_coding	Psmd11	intron	ENSMUSG00000017428	ProperStrand	25	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.3954
chr7	94227681	94227700	LINE	L1Md_F3	L1	chr7L1Md_F394223998	ProperStrand	1	chr3	69085300	69085349	SINE	RSINE1	B4	chr3RSINE169085236	ProperStrand	11	1	-inf
chr9	64174844	64174926	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr17	33952300	33952462	protein_coding	Kank3	intron	ENSMUSG00000042099	NonProperStrand	107	1	-7.7882
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr15	85177758	85177780	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-11.5293
chr5	52154081	52154157	DNA	MER2	MER2_type	chr5MER252153997	ProperStrand	1	chr17	34952102	34952155	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	1	-inf
chr15	77099280	77102887	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	chr11	88534739	88534758	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	2	-7.5471
chr17	70963685	70963778	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	113688981	113689032	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-4.6877
chr3	152335777	152335795	lincRNA	AI115009	intron	ENSMUSG00000085901	ProperStrand	1	chr4	107252549	107252634	protein_coding	Glis1	intron	ENSMUSG00000034762	NonProperStrand	44	1	-inf
chr3	146416298	146416382	protein_coding	Prkacb	intron	ENSMUSG00000005034	NonProperStrand	52	chr6	85215483	85215557	protein_coding	Sfxn5	intron	ENSMUSG00000033720	ProperStrand	81	1	-11.7071
chr2	32542877	32542977	protein_coding-noncoding	Fpgs	utr3	ENSMUSG00000009566	ProperStrand	1	chr2	32543352	32543442	protein_coding	Fpgs	intron	ENSMUSG00000009566	ProperStrand	1	1	-inf
chr8	25762884	25762974	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	40	chr10	89409824	89409924	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-11.2572
chr12	69982015	69982115	LINE	Lx7	L1	chr12Lx769982010	ProperStrand	1	chr14	67022392	67023063	LINE	L1MC1	L1	chr14L1MC167022191	NonProperStrand	1	1	-inf
chr17	22614235	22614325	LINE	L1Md_F3	L1	chr17L1Md_F322612453	ProperStrand	1	chr17	22614623	22614723	LINE	L1Md_F3	L1	chr17L1Md_F322614325	ProperStrand	1	1	-inf
chr5	45010315	45010405	protein_coding	Ldb2	intron	ENSMUSG00000039706	NonProperStrand	8	chr13	8375673	8375773	protein_coding	Adarb2	intron	ENSMUSG00000052551	ProperStrand	25	1	-18.0021
chr14	20944953	20945043	LINE	HAL1	L1	chr14HAL120944552	ProperStrand	1	chr17	39847498	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	163406707	163406731	DNA	Kanga1a	Tc2	chr2Kanga1a163406368	NonProperStrand	1	chr13	112506751	112506849	protein_coding	Mier3	utr3	ENSMUSG00000032727	ProperStrand	63	1	-inf
mmu-miR-1946b	9	26	miRNA	mmu-miR-1946b	.	mmu-miR-1946b	ProperStrand	1	chr7	99913708	99913811	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-inf
chr3	86805598	86805688	LINE	L1_Rod	L1	chr3L1_Rod86805364	NonProperStrand	3	chr3	86799513	86805602	LTR	ORR1A4	MaLR	chr3ORR1A486799453	NonProperStrand	8	3	-inf
chr7	107209478	107209545	LINE	L1MEc	L1	chr7L1MEc107209439	NonProperStrand	5	chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr17	39847662	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	65328005	65328029	protein_coding	4931440P22Rik	intron	ENSMUSG00000074580	ProperStrand	1	1	-inf
chr18	24790492	24790558	protein_coding	Elp2	intron	ENSMUSG00000024271	ProperStrand	44	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.5843
chr15	20760709	20760809	LTR	RLTR13D4	ERVK	chr15RLTR13D420760283	ProperStrand	1	chr15	20760936	20761026	SINE	B1_Mus1	Alu	chr15B1_Mus120760881	ProperStrand	1	1	-inf
chr11	5073091	5073181	LINE	L1M4b	L1	chr11L1M4b5072737	NonProperStrand	1	chr11	5073289	5073389	SINE	B3A	B2	chr11B3A5073270	NonProperStrand	1	1	-inf
chr8	33424445	33424530	LINE	L1_Mus1	L1	chr8L1_Mus133424349	ProperStrand	1	chr17	39847891	39847955	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39848311	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	56191030	56191093	protein_coding	Chaf1a	intron	ENSMUSG00000002835	NonProperStrand	23	1	-3.1127
chr6	136804019	136804127	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	chr5	17776750	17776795	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	2	-17.9504
chr4	101709548	101709638	LTR	ORR1B1-int	MaLR	chr4ORR1B1-int101709541	ProperStrand	1	chr4	101709839	101709939	LTR	ORR1B1	MaLR	chr4ORR1B1101709678	ProperStrand	1	1	-inf
chr9	13837447	13837475	LINE	Lx6	L1	chr9Lx613837280	ProperStrand	1	chr9	123461931	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	103355802	103355902	LTR	MTEa	MaLR	chr2MTEa103355658	NonProperStrand	1	chr2	103355937	103356027	SINE	B4	B4	chr2B4103355946	NonProperStrand	1	1	-inf
chr14	31697109	31697199	LINE	L1_Mur2	L1	chr14L1_Mur231697089	NonProperStrand	1	chr14	31697000	31697100	SINE	B1_Mur2	Alu	chr14B1_Mur231696923	NonProperStrand	1	1	-inf
chr16	38521766	38521844	protein_coding	4930455C21Rik	intron	ENSMUSG00000002846	ProperStrand	13	chr16	38526733	38526809	protein_coding	Poglut1	exon	ENSMUSG00000034064	ProperStrand	24	1	-17.0084
chr9	123461953	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	4	-5.9078
chr12	87273141	87273182	protein_coding	Ttll5	intron	ENSMUSG00000012609	ProperStrand	42	chr10	20340193	20340231	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	1	-9.4384
chr17	39847050	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	35154412	35154471	LTR	RMER17C-int	ERVK	chr18RMER17C-int35153838	NonProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr8	86745299	86745390	protein_coding	Zswim4	intron	ENSMUSG00000035671	ProperStrand	18	1	-12.2509
chr19	23162412	23162433	SINE	B1_Mus1	Alu	chr19B1_Mus123162322	NonProperStrand	2	chr19	23148177	23148288	lincRNA	C330002G04Rik	intron	ENSMUSG00000087169	NonProperStrand	149	2	-inf
chr8	75013312	75013391	protein_coding	Slc35e1	intron	ENSMUSG00000019731	NonProperStrand	2	chr13	17721201	17721254	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	1	-19.3380
chr19	34970072	34970135	LINE	L1_Mur3	L1	chr19L1_Mur334969975	ProperStrand	2	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr11	117266670	117266770	LTR	RLTR41	ERV1	chr11RLTR41117266692	ProperStrand	1	chr17	39847460	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	35148876	35148976	protein_coding	Hdac9	intron	ENSMUSG00000004698	NonProperStrand	24	chr12	35036363	35036453	protein_coding	Hdac9	intron	ENSMUSG00000004698	ProperStrand	15	1	-16.7246
chr11	104457085	104457175	DNA	RCHARR1	MER1_type	chr11RCHARR1104457015	NonProperStrand	1	chr11	104457226	104457326	SINE	RSINE1	B4	chr11RSINE1104457240	ProperStrand	1	1	-inf
chr3	135453156	135453224	LINE	Lx9	L1	chr3Lx9135451662	ProperStrand	1	chr6	3201472	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr11	95721254	95721354	lincRNA	4833417C18Rik	intron	ENSMUSG00000086015	ProperStrand	3	chr13	97190572	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr4	133415805	133415824	protein_coding	Rps6ka1	intron	ENSMUSG00000003644	ProperStrand	1	chr9	123461822	123461878	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	35981721	35981765	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr8	80785181	80788560	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-5.4171
chr12	30757764	30757789	protein_coding	Tpo	intron	ENSMUSG00000020673	NonProperStrand	3	chr7	46781757	46781893	protein_coding	Zfp619	intron	ENSMUSG00000068959	NonProperStrand	3	1	-20.2168
chr11	5419039	5419096	LINE	Lx5	L1	chr11Lx55418878	NonProperStrand	2	chr17	39843727	39843795	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-10.2298
chr11	107399462	107399562	processed_transcript	A830035A12Rik	.	ENSMUSG00000059706	ProperStrand	30	chr5	34344192	34344282	protein_coding	Nat8l	utr3	ENSMUSG00000048142	ProperStrand	31	2	-inf
chr8	120578063	120578561	LINE	L1MC5	L1	chr8L1MC5120578277	NonProperStrand	1	chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	1	-inf
chr16	22401899	22411684	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr7	99935227	99942962	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-6.6018
chr6	88442499	88442530	protein_coding	Ruvbl1	intron	ENSMUSG00000030079	NonProperStrand	47	chr8	72466426	72466490	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	1	-10.5840
chr4	34797112	34797145	protein_coding	Zfp292	intron	ENSMUSG00000039967	ProperStrand	60	chr7	103550743	103550786	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-12.4317
chr8	58698364	58698454	LTR	RLTR25B	ERVK	chr8RLTR25B58698341	NonProperStrand	1	chr8	58698500	58698600	SINE	B4	B4	chr8B458698456	ProperStrand	1	1	-inf
chr15	97016213	97016799	LTR	MLT1J2	MaLR	chr15MLT1J297016766	ProperStrand	2	chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	6583503	6583555	LTR	ORR1D2	MaLR	chr11ORR1D26583208	ProperStrand	4	chr5	122910983	122911045	protein_coding	Atp2a2	intron	ENSMUSG00000029467	ProperStrand	38	3	-inf
chr1	9940611	9940701	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chrX	10092236	10092336	protein_coding	Tspan7	intron	ENSMUSG00000058254	ProperStrand	1	1	-inf
chr5	62613104	62613123	LINE	L1Md_T	L1	chr5L1Md_T62610830	NonProperStrand	3	chr2	168601392	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	1	-20.7706
chr8	84503678	84503735	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr2	104628471	104628573	protein_coding	Qser1	exon	ENSMUSG00000074994	NonProperStrand	35	1	-7.5912
chrX	119206673	119206763	LINE	L1_Mus3	L1	chrXL1_Mus3119206115	NonProperStrand	1	chrX	119206541	119206641	LINE	L1_Mus3	L1	chrXL1_Mus3119206115	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr8	127436109	127436232	protein_coding	Egln1	intron	ENSMUSG00000031987	NonProperStrand	13	1	-9.6648
chr13	13157168	13157268	LINE	L1_Mm	L1	chr13L1_Mm13157171	NonProperStrand	1	chr13	13156842	13156932	LINE	Lx2A1	L1	chr13Lx2A113156423	ProperStrand	1	1	-inf
chr1	132989002	132989092	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	chr5	24697803	24697903	protein_coding	Galntl5	intron	ENSMUSG00000028938	ProperStrand	26	1	-11.6361
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	17776747	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-4.9379
chr4	5509882	5509972	LINE	L1Md_F2	L1	chr4L1Md_F25509091	ProperStrand	1	chr4	5510223	5510323	LINE	Lx	L1	chr4Lx5510101	ProperStrand	1	1	-inf
chr13	15892675	15892775	LINE	L1MA4	L1	chr13L1MA415892694	NonProperStrand	1	chr13	15892830	15892920	LINE	L1Md_T	L1	chr13L1Md_T15892844	NonProperStrand	2	1	-inf
chr3	59398792	59398892	LINE	L1VL1	L1	chr3L1VL159398728	NonProperStrand	1	chr9	25235673	25235763	LINE	Lx8	L1	chr9Lx825235518	NonProperStrand	1	1	-inf
chr12	78351073	78351122	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	34630827	34630898	protein_coding	Zfyve28	utr5	ENSMUSG00000037224	NonProperStrand	46	1	-6.4208
chr1	168704798	168704888	LTR	MLT1B	MaLR	chr1MLT1B168704803	ProperStrand	1	chr1	168704887	168704987	LTR	MLT1J2	MaLR	chr1MLT1J2168704887	NonProperStrand	1	1	-inf
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	chr11	107272570	107272621	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-9.4038
chr5	146261152	146261195	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr14	70633757	70633790	protein_coding	Ppp3cc	intron	ENSMUSG00000022092	ProperStrand	66	1	-4.8783
chr6	94240926	94240969	LTR	MTD	MaLR	chr6MTD94240748	NonProperStrand	2	chr4	132332887	132332946	protein_coding	Rpa2	utr3	ENSMUSG00000028884	NonProperStrand	6	1	-inf
chr5	110409695	110409840	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110409450	NonProperStrand	6	chr1	163779870	163779886	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	19	1	-19.0482
chr11	36651370	36651388	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	chr6	83176109	83176127	protein_coding	Slc4a5	intron	ENSMUSG00000068323	ProperStrand	48	1	-8.8297
chr17	25007452	25007534	LINE	L1M4	L1	chr17L1M425007108	NonProperStrand	2	chr18	88868974	88869034	protein_coding	Socs6	intron	ENSMUSG00000056153	ProperStrand	33	1	-20.7426
chr8	67768148	67768266	LINE	L1Md_T	L1	chr8L1Md_T67765996	NonProperStrand	2	chr17	39846816	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr19	12767592	12767680	LINE	L1_Mur1	L1	chr19L1_Mur112767576	NonProperStrand	2	chr19	12769107	12769169	LTR	RLTR17	ERVK	chr19RLTR1712769122	ProperStrand	2	2	-inf
chr17	39847244	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	30133810	30133879	protein_coding	Lrrc8a	intron	ENSMUSG00000007476	ProperStrand	6	1	-3.9545
chr11	109011730	109011853	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	54190144	54190188	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	12	-inf
chr2	22744890	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	14799635	14799669	LTR	MLT1A0	MaLR	chr9MLT1A014799530	NonProperStrand	2	1	-14.2535
chr19	42123023	42123064	protein_coding	Hoga1	intron	ENSMUSG00000025176	ProperStrand	14	chr9	123462044	123462095	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr3	59905215	59905305	LINE	L1_Mur3	L1	chr3L1_Mur359905202	ProperStrand	1	chr3	59904860	59904960	LINE	Lx8	L1	chr3Lx859904430	ProperStrand	1	1	-inf
chr9	32924589	32924679	LINE	Lx7	L1	chr9Lx732924556	NonProperStrand	1	chr9	32924366	32924466	LTR	MTD	MaLR	chr9MTD32924051	NonProperStrand	1	1	-inf
chr11	28337932	28338032	protein_coding	Ccdc85a	intron	ENSMUSG00000032878	ProperStrand	14	chr11	69392611	69392701	protein_coding	Wrap53	utr5	ENSMUSG00000041346	ProperStrand	8	2	-19.7117
chrX	101585046	101585146	protein_coding	Abcb7	intron	ENSMUSG00000031333	NonProperStrand	37	chr4	116552202	116552292	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-11.2130
chr13	44869928	44870016	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr1	132504428	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	1	-5.9804
chr7	100830447	100830523	LINE	L1_Mus2	L1	chr7L1_Mus2100828822	ProperStrand	3	chr13	97190562	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr1	161036058	161036124	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr8	114777966	114777986	LINE	L1_Mus4	L1	chr8L1_Mus4114777946	ProperStrand	15	1	-15.5275
chr11	70463301	70463401	protein_coding-noncoding	Rnf167	utr5	ENSMUSG00000040746	NonProperStrand	1	chr11	70463417	70463507	protein_coding	Rnf167	exon	ENSMUSG00000040746	NonProperStrand	1	1	-inf
chr9	19105742	19105856	LINE	L1_Mus1	L1	chr9L1_Mus119105620	NonProperStrand	1	chr7	133022157	133022189	protein_coding	Gsg1l	utr3	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr13	65654437	65654537	LTR	ORR1B1	MaLR	chr13ORR1B165654252	NonProperStrand	1	chr9	123461905	123461995	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	78063203	78063303	LTR	MTEa	MaLR	chr10MTEa78063106	NonProperStrand	1	chr10	78059646	78063190	LTR	RMER19B	ERVK	chr10RMER19B78058889	ProperStrand	3	1	-inf
chr3	90087694	90088436	SINE	B1_Mus2	Alu	chr3B1_Mus290087664	ProperStrand	4	chr8	13641690	13641707	protein_coding	Rasa3	intron	ENSMUSG00000031453	NonProperStrand	7	1	-inf
chr19	9940051	9940111	LTR	MT2A	ERVL	chr19MT2A9940006	NonProperStrand	1	chr8	33792599	33792647	SINE	B1_Mm	Alu	chr8B1_Mm33792511	NonProperStrand	2	1	-inf
chr1	134581386	134617904	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-5.8894
chr17	39846453	39846563	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	79356804	79377811	protein_coding	C030046I01Rik	intron	ENSMUSG00000035781	ProperStrand	2	2	-inf
chr17	39848166	39848209	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	76478039	76478124	protein_coding	Cyhr1	exon	ENSMUSG00000053929	NonProperStrand	10	1	-4.7139
chr1	132990565	132990668	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	chr15	103290717	103290734	protein_coding	Nckap1l	intron	ENSMUSG00000022488	ProperStrand	25	1	-11.7163
chr9	123461811	123462000	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr11	61829435	61830590	protein_coding	Specc1	intron	ENSMUSG00000042331	ProperStrand	27	2	-4.4791
chr4	150248366	150248437	SINE	B1_Mus1	Alu	chr4B1_Mus1150248378	NonProperStrand	2	chr17	46800830	46800886	protein_coding	Cul7	intron	ENSMUSG00000038545	NonProperStrand	26	1	-20.6107
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	65660212	65660350	protein_coding	Zfp609	intron	ENSMUSG00000040524	NonProperStrand	165	1	-4.5998
chr10	107900676	107900766	LTR	ORR1A2	MaLR	chr10ORR1A2107900458	NonProperStrand	1	chr10	107900860	107900960	LTR	RMER6A	ERVK	chr10RMER6A107900862	ProperStrand	1	1	-inf
chr19	53313365	53313408	protein_coding	Add3	intron	ENSMUSG00000025026	ProperStrand	33	chr2	157591607	157591724	protein_coding	Ctnnbl1	intron	ENSMUSG00000027649	NonProperStrand	46	2	-inf
chr15	62167711	62167811	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr13	9746980	9747070	protein_coding	Zmynd11	intron	ENSMUSG00000021156	ProperStrand	40	1	-7.0249
chr17	39847118	39847167	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	103854410	103854508	SINE	PB1D10	Alu	chr11PB1D10103854411	NonProperStrand	1	1	-inf
chr5	146951267	146951922	LINE	Lx8	L1	chr5Lx8146951749	NonProperStrand	1	chr17	39845879	39845913	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr14	19278154	19278210	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr11	8548078	8548112	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	1	-7.4737
chr2	14146271	14146347	LINE	Lx5	L1	chr2Lx514145800	ProperStrand	1	chr4	83329318	83329372	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-inf
chr6	105439130	105439230	LTR	IAPEz-int	ERVK	chr6IAPEz-int105439060	NonProperStrand	1	chr6	105438975	105439065	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm105438724	NonProperStrand	1	1	-inf
chr14	12593107	12593174	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	30	chr2	5379278	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.9007
chr15	53270399	53270528	LTR	MTE2a	MaLR	chr15MTE2a53270338	ProperStrand	1	chr6	117870803	117870823	protein_coding	Hnrnpf	intron	ENSMUSG00000042079	ProperStrand	5	1	-inf
chr15	36599011	36599214	DNA	URR1B	MER1_type	chr15URR1B36598895	ProperStrand	3	chr13	67538801	67538872	protein_coding	Zfp874a	intron	ENSMUSG00000069206	ProperStrand	4	1	-inf
chr18	74063792	74063889	LTR	RLTR13D3	ERVK	chr18RLTR13D374062934	ProperStrand	13	chr14	22042435	22042479	protein_coding	Adk	intron	ENSMUSG00000039197	ProperStrand	22	1	-17.2387
chr1	161036080	161036138	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr9	20890780	20890824	protein_coding	Raver1	exon	ENSMUSG00000010205	NonProperStrand	43	1	-13.3690
chr17	13016854	13016886	antisense	Airn	.	ENSMUSG00000078247	ProperStrand	40	chr17	13775929	13776038	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	1	-11.1828
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr8	119944478	119944614	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-11.2823
chr3	116713899	116713999	LINE	L1Md_F2	L1	chr3L1Md_F2116713754	ProperStrand	1	chr3	116714760	116714850	LINE	L1Md_T	L1	chr3L1Md_T116714427	NonProperStrand	1	1	-inf
chr4	96382292	96382392	LINE	Lx9	L1	chr4Lx996382293	NonProperStrand	1	chr4	96382160	96382250	SINE	B3	B2	chr4B396382153	ProperStrand	1	1	-inf
chr19	35631447	35631537	LINE	Lx	L1	chr19Lx35631237	NonProperStrand	1	chr19	35631676	35631776	LINE	Lx	L1	chr19Lx35631237	ProperStrand	1	1	-inf
chr4	117177941	117178157	SINE	B3	B2	chr4B3117177796	ProperStrand	1	chr1	72226313	72226361	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-inf
chr4	141301327	141306515	SINE	RSINE1	B4	chr4RSINE1141301316	NonProperStrand	1	chr4	141306528	141306571	protein_coding	Agmat	intron	ENSMUSG00000040706	ProperStrand	58	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr16	55973035	55973139	protein_coding	Rpl24	intron	ENSMUSG00000022601	NonProperStrand	3	1	-16.1854
chr12	80221764	80221848	LTR	MTC	MaLR	chr12MTC80221575	ProperStrand	4	chr12	80222018	80222069	LTR	MTD	MaLR	chr12MTD80221976	ProperStrand	1	1	-inf
chr10	104830268	104830358	protein_coding	Tmtc2	intron	ENSMUSG00000036019	ProperStrand	11	chr3	31158397	31158497	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	23	1	-17.4714
chr3	69117508	69117641	SINE	B4A	B4	chr3B4A69117499	ProperStrand	1	chr6	80622877	80622894	protein_coding	Lrrtm4	intron	ENSMUSG00000052581	NonProperStrand	16	1	-inf
chr17	39847648	39847692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	96615368	96615422	LTR	ORR1A2	MaLR	chr7ORR1A296615187	ProperStrand	1	1	-inf
chr5	146261301	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr1	63177792	63178450	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	1	-7.4325
chr2	27399668	27399771	LTR	ORR1C1	MaLR	chr2ORR1C127399676	ProperStrand	1	chr2	27399842	27399898	LTR	RMER19B	ERVK	chr2RMER19B27399831	NonProperStrand	1	1	-inf
chr17	39847578	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	42035478	42037055	SINE	B4A	B4	chr9B4A42035264	NonProperStrand	1	1	-inf
chr5	121918874	121918942	protein_coding	Tmem116	intron	ENSMUSG00000029452	NonProperStrand	41	chr3	103133778	103133855	protein_coding	Trim33	intron	ENSMUSG00000033014	ProperStrand	59	1	-12.8262
chr7	99942970	99943058	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	chr9	110281285	110281332	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-5.1090
chr13	94991551	94991641	protein_coding	Scamp1	intron	ENSMUSG00000021687	NonProperStrand	23	chr4	98737577	98737677	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	1	-12.7654
chr5	136136985	136137041	SINE	B1_Mur3	Alu	chr5B1_Mur3136136960	NonProperStrand	1	chr5	136138587	136138669	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n136138494	ProperStrand	1	1	-inf
chr7	116663830	116663920	protein_coding-noncoding	Rpl27a	utr5	ENSMUSG00000046364	ProperStrand	1	chr7	116664032	116664132	protein_coding	Rpl27a	exon	ENSMUSG00000046364	ProperStrand	1	1	-inf
chr12	110803251	110803288	lincRNA	Meg3	exon	ENSMUSG00000021268	NonProperStrand	14	chr12	110807750	110807815	lincRNA	Gm17639	intron	ENSMUSG00000090521	ProperStrand	5	1	-20.5361
chr11	85780697	85780787	LTR	ORR1D2	MaLR	chr11ORR1D285780512	NonProperStrand	1	chr11	85781016	85781116	SINE	B4A	B4	chr11B4A85780879	NonProperStrand	1	1	-inf
chr17	39847271	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	150388439	150388553	SINE	B2_Mm1a	B2	chr2B2_Mm1a150388373	NonProperStrand	1	1	-inf
chr19	5295277	5295322	protein_coding	Sf3b2	exon	ENSMUSG00000024853	ProperStrand	58	chr4	141476162	141476264	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	1	-11.1459
chr6	3201509	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chrX	164075598	164075649	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	53	1	-3.1176
chr12	84465744	84465791	LINE	L1MEf	L1	chr12L1MEf84465626	ProperStrand	3	chr19	3669031	3669093	protein_coding	Lrp5	intron	ENSMUSG00000024913	ProperStrand	159	1	-16.4119
chr17	84223824	84223935	SINE	B1_Mus1	Alu	chr17B1_Mus184223771	NonProperStrand	1	chr13	81530741	81530762	protein_coding	Gpr98	exon	ENSMUSG00000069170	ProperStrand	77	1	-inf
chrX	17223201	17224013	LTR	MERVL-int	ERVL	chrXMERVL-int17223788	ProperStrand	3	chrX	17224025	17226400	LTR	MERVL-int	ERVL	chrXMERVL-int17223913	ProperStrand	3	3	-inf
chr11	6396240	6396257	SINE	RSINE1	B4	chr11RSINE16396175	ProperStrand	1	chr5	132144914	132144998	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-inf
chr9	64973357	64975690	protein_coding	Igdcc4	intron	ENSMUSG00000032816	ProperStrand	19	chr4	134926153	134926219	protein_coding	A330049M08Rik	utr3	ENSMUSG00000043924	NonProperStrand	31	1	-15.6942
chr8	87845401	87845464	DNA	Charlie5	MER1_type	chr8Charlie587845379	NonProperStrand	1	chr8	87855648	87855731	protein_coding	Mylk3	intron	ENSMUSG00000031698	ProperStrand	57	1	-inf
chr11	50308810	50308903	DNA	Charlie1	MER1_type	chr11Charlie150308463	NonProperStrand	4	chr17	39847531	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-6.7714
chr17	39843375	39843465	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	119142838	119142938	protein_coding	Gaa	intron	ENSMUSG00000025579	NonProperStrand	24	1	-4.2456
chr11	14546462	14546486	LINE	L1Md_F2	L1	chr11L1Md_F214541718	NonProperStrand	2	chr17	39847243	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr7	127231040	127231161	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	147	2	-5.8374
chr8	120518384	120518484	LINE	L2b	L2	chr8L2b120518380	NonProperStrand	6	chr8	120518200	120518290	LTR	RLTR19B	ERVK	chr8RLTR19B120518226	NonProperStrand	6	6	-inf
chr13	30539580	30539661	LINE	L1_Mur3	L1	chr13L1_Mur330537376	ProperStrand	1	chr17	39846432	39846486	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	122950343	122950433	LINE	Lx6	L1	chrXLx6122949920	NonProperStrand	1	chrX	126464784	126464884	protein_coding	Diap2	intron	ENSMUSG00000034480	NonProperStrand	11	1	-inf
chr5	139307830	139325308	LTR	RMER4B	ERVK	chr5RMER4B139307744	ProperStrand	1	chr5	139272946	139273036	protein_coding	Fam20c	intron	ENSMUSG00000025854	NonProperStrand	41	1	-inf
chr14	97800771	97800861	DNA	Looper	PiggyBac	chr14Looper97800670	NonProperStrand	1	chr14	97800928	97801028	LINE	Lx8	L1	chr14Lx897800929	ProperStrand	1	1	-inf
chr3	135554719	135554749	LTR	RMER15	ERVL	chr3RMER15135554721	NonProperStrand	1	chrX	93718696	93718767	protein_coding	Heph	intron	ENSMUSG00000031209	ProperStrand	33	1	-inf
chr15	53214135	53214202	LINE	L1_Mur3	L1	chr15L1_Mur353213336	ProperStrand	7	chr9	123461905	123461946	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr15	102477241	102477331	LTR	ERVL-int	ERVL	chr15ERVL-int102477187	ProperStrand	1	chr15	102477367	102477467	SINE	B4A	B4	chr15B4A102477362	ProperStrand	1	1	-inf
chr4	118083852	118083887	protein_coding	Med8	intron	ENSMUSG00000006392	NonProperStrand	2	chr7	132989294	132989394	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	1	-16.3143
chr5	110324591	110324701	LTR	ORR1A2-int	MaLR	chr5ORR1A2-int110324546	ProperStrand	2	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-14.6890
chr10	39590783	39590879	protein_coding	Rev3l	intron	ENSMUSG00000019841	ProperStrand	81	chr9	110281285	110281337	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-6.9661
chr5	105798730	105798806	LINE	L1Md_F2	L1	chr5L1Md_F2105797620	NonProperStrand	27	chr5	105795790	105795835	LTR	RLTR13A2	ERVK	chr5RLTR13A2105795801	ProperStrand	2	1	-21.2142
chr10	80930280	80930335	protein_coding-noncoding	Celf5	utr3	ENSMUSG00000034818	NonProperStrand	1	chr9	123461884	123461949	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	64664916	64665006	protein_coding	Pja2	intron	ENSMUSG00000024083	NonProperStrand	19	chr17	66720042	66720142	protein_coding	1110012J17Rik	intron	ENSMUSG00000052105	NonProperStrand	2	1	-20.8001
chr10	82127054	82127118	protein_coding	Glt8d2	intron	ENSMUSG00000020251	NonProperStrand	24	chr1	136364891	136364969	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-12.2347
chr17	6121996	6122096	protein_coding-noncoding	Tulp4	utr5	ENSMUSG00000034377	ProperStrand	12	chr7	28174678	28174866	protein_coding	Spnb4	intron	ENSMUSG00000011751	ProperStrand	12	7	-22.6645
chr11	63511834	63511934	LINE	Lx7	L1	chr11Lx763511714	NonProperStrand	1	chr11	63511993	63512083	SINE	B1_Mus2	Alu	chr11B1_Mus263511995	NonProperStrand	1	1	-inf
chr3	4344702	4344802	LINE	Lx3A	L1	chr3Lx3A4344300	ProperStrand	1	chr3	4345095	4345185	LINE	Lx3A	L1	chr3Lx3A4344981	ProperStrand	1	1	-inf
chr7	58399306	58399389	LINE	Lx3_Mus	L1	chr7Lx3_Mus58399112	NonProperStrand	2	chr11	116757718	116757743	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	1	-19.8653
chr1	156889796	156889877	LTR	ORR1D2	MaLR	chr1ORR1D2156889654	ProperStrand	1	chr7	16275690	16275762	Simple_repeat	(GGAAA)n	Simple_repeat	chr7(GGAAA)n16275643	NonProperStrand	1	1	-inf
chr17	39847174	39847212	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	28047210	28047253	protein_coding	Numbl	exon	ENSMUSG00000063160	NonProperStrand	2	1	-6.5615
chr12	111176167	111176217	LINE	L1M4	L1	chr12L1M4111175670	NonProperStrand	1	chr5	53656384	53656424	LTR	MTA_Mm	MaLR	chr5MTA_Mm53656286	ProperStrand	6	1	-inf
chr13	29967425	29967527	LINE	L1_Mus4	L1	chr13L1_Mus429967042	ProperStrand	15	chr13	29967534	29967624	LINE	Lx7	L1	chr13Lx729967532	ProperStrand	7	5	-20.2887
chr5	29736059	29748384	LINE	Lx	L1	chr5Lx29735871	ProperStrand	2	chr5	29752423	29753546	LTR	MYSERV6-int	ERVK	chr5MYSERV6-int29751588	ProperStrand	2	2	-inf
chr7	28174505	28174551	protein_coding	Spnb4	intron	ENSMUSG00000011751	NonProperStrand	106	chr11	58020691	58020790	protein_coding	Igtp	utr3	ENSMUSG00000078853	ProperStrand	36	1	-11.9108
chr17	39845721	39845849	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	56005875	56005907	protein_coding	Zfp119a	exon	ENSMUSG00000057835	ProperStrand	21	1	-4.1417
chr5	144852449	144852513	LTR	RLTR10-int	ERVK	chr5RLTR10-int144852011	ProperStrand	3	chr5	144851647	144851681	LTR	RLTR10	ERVK	chr5RLTR10144851559	ProperStrand	1	1	-inf
chr10	81280082	81280182	LTR	RLTR19-int	ERVK	chr10RLTR19-int81279867	ProperStrand	4	chr10	81280434	81280524	LTR	RMER19A	ERVK	chr10RMER19A81280277	ProperStrand	5	4	-inf
chr17	39847698	39847745	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	103312911	103312957	SINE	ID_B1	B4	chr9ID_B1103312834	NonProperStrand	1	1	-inf
chr17	39847616	39847722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	144433158	144433174	LTR	ETnERV3-int	ERVK	chr3ETnERV3-int144432250	NonProperStrand	1	1	-inf
chr9	62437018	62437096	SINE	B1_Mus1	Alu	chr9B1_Mus162436988	NonProperStrand	1	chr9	62360978	62361033	protein_coding	Coro2b	intron	ENSMUSG00000041729	NonProperStrand	105	1	-inf
chr9	119921292	119921392	SINE	B1_Mus2	Alu	chr9B1_Mus2119921288	NonProperStrand	2	chr9	119921153	119921243	SINE	PB1D10	Alu	chr9PB1D10119921109	ProperStrand	2	2	-inf
chr18	4966987	4967017	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr13	17704405	17704500	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	1	-9.2886
chr3	123507935	123507995	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr1	180093009	180093058	protein_coding	Gm16432	intron	ENSMUSG00000066667	ProperStrand	31	1	-13.8087
chr17	28170320	28170364	protein_coding	Anks1	intron	ENSMUSG00000024219	ProperStrand	72	chr7	105373348	105373371	protein_coding	Acer3	intron	ENSMUSG00000030760	NonProperStrand	2	1	-19.1829
chr3	129579489	129579581	LTR	RLTR9A	ERVK	chr3RLTR9A129579448	ProperStrand	3	chr3	129577576	129577620	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-15.9685
chr5	115257056	115257156	SINE	PB1D9	Alu	chr5PB1D9115257052	ProperStrand	3	chr5	115260125	115260215	protein_coding	1500011B03Rik	intron	ENSMUSG00000072694	ProperStrand	6	3	-inf
chr12	110540116	110540216	LINE	Lx	L1	chr12Lx110540130	ProperStrand	10	chr12	110540008	110540099	LTR	MTB	MaLR	chr12MTB110539725	ProperStrand	3	2	-20.5283
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	113901595	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-4.5827
chr10	40258530	40258620	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr14	54381336	54381385	LINE	L1MA5	L1	chr14L1MA554381223	ProperStrand	1	1	-inf
chr8	44952229	44952245	LINE	L1Md_F3	L1	chr8L1Md_F344951540	NonProperStrand	18	chr7	116212377	116212403	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-13.3039
chr13	75988550	75988651	SINE	B3A	B2	chr13B3A75988524	ProperStrand	1	chr13	33985288	33985378	protein_coding	Serpinb6c	intron	ENSMUSG00000052180	ProperStrand	6	1	-inf
chr17	39843654	39843687	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	131882863	131882936	protein_coding	Trnau1ap	intron	ENSMUSG00000028898	NonProperStrand	42	1	-3.1977
chr6	30477691	30477712	SINE	B1_Mur1	Alu	chr6B1_Mur130477637	NonProperStrand	1	chr11	22069121	22069253	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-inf
chr17	39847440	39847460	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	143031390	143031505	SINE	B4A	B4	chr5B4A143031353	ProperStrand	1	1	-inf
chr4	136527943	136528012	LINE	L2a	L2	chr4L2a136527727	ProperStrand	1	chr11	33303054	33303120	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-inf
chr6	49236467	49236606	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr11	105988782	105988799	protein_coding	Map3k3	intron	ENSMUSG00000020700	NonProperStrand	10	1	-12.9934
chr12	32836374	32836491	LINE	MusHAL1	L1	chr12MusHAL132835834	NonProperStrand	1	chr12	32837315	32837358	LINE	MusHAL1	L1	chr12MusHAL132836686	NonProperStrand	5	1	-inf
chr19	45529893	45529909	protein_coding	Btrc	intron	ENSMUSG00000025217	NonProperStrand	40	chr1	38555499	38555625	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	1	-10.7981
chrX	105232658	105232758	LINE	L1Md_F2	L1	chrXL1Md_F2105231132	ProperStrand	2	chrX	105233056	105233146	LINE	L1Md_F2	L1	chrXL1Md_F2105232893	ProperStrand	2	2	-inf
chrX	68711356	68711403	antisense	Gm16189	.	ENSMUSG00000085284	ProperStrand	10	chr12	85845861	85845943	protein_coding	Lin52	intron	ENSMUSG00000085793	ProperStrand	29	1	-17.1057
chr14	102193177	102193195	protein_coding	Lmo7	intron	ENSMUSG00000033060	NonProperStrand	6	chr10	88192803	88192918	pseudogene	Gm4925	.	ENSMUSG00000069540	NonProperStrand	1	1	-inf
chr18	65582986	65583076	LTR	MTE2a	MaLR	chr18MTE2a65582814	NonProperStrand	1	chr18	65582691	65582791	LTR	ORR1C2	MaLR	chr18ORR1C265582460	NonProperStrand	1	1	-inf
chr15	99498748	99498764	SINE	B2_Mm1a	B2	chr15B2_Mm1a99498607	NonProperStrand	8	chr7	111076059	111076179	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-15.3412
chr11	115678670	115678776	protein_coding	Tsen54	intron	ENSMUSG00000020781	NonProperStrand	20	chr12	79719565	79719616	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-9.1262
chr17	66119070	66119087	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	chrX	100024048	100024182	pseudogene	Gm4234	.	ENSMUSG00000081108	ProperStrand	14	1	-14.6524
chr8	121853309	121853423	LTR	MT2B2	ERVL	chr8MT2B2121853166	NonProperStrand	1	chr9	123461931	123461951	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39848035	39848067	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	85879759	85879781	protein_coding-noncoding	Adamtsl1	utr5	ENSMUSG00000066113	ProperStrand	1	1	-inf
chr1	153183282	153183357	SINE	RSINE1	B4	chr1RSINE1153183229	NonProperStrand	1	chr11	74921794	74921848	protein_coding	Smg6	intron	ENSMUSG00000038290	NonProperStrand	52	1	-inf
chr6	3201493	3201534	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chrX	84422604	84422711	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	ProperStrand	52	1	-3.1519
chr7	126798002	126798078	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr18	34940867	34940902	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-8.0765
chr5	100362210	100363377	LINE	Lx7	L1	chr5Lx7100361594	ProperStrand	5	chr17	39847736	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr14	78105129	78105229	protein_coding	Enox1	intron	ENSMUSG00000022012	NonProperStrand	14	chr14	78105763	78105853	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	1	-12.2899
chr5	146261024	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	90345476	90345574	protein_coding	S100a16	intron	ENSMUSG00000074457	ProperStrand	1	1	-inf
chr11	69967102	69967259	LTR	MurERV4_19-int	ERVK	chr11MurERV4_19-int69967190	NonProperStrand	1	chr8	70510101	70510195	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-inf
chrX	53194390	53194480	LTR	MurERV4-int	ERVK	chrXMurERV4-int53194355	ProperStrand	1	chrX	53194259	53194359	Simple_repeat	(TAGA)n	Simple_repeat	chrX(TAGA)n53194102	NonProperStrand	1	1	-inf
chr2	95733474	95733574	LINE	Lx9	L1	chr2Lx995733350	NonProperStrand	1	chr2	95733685	95733775	LINE	Lx9	L1	chr2Lx995733701	NonProperStrand	1	1	-inf
chr9	40224586	40224686	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	chr2	69521744	69521834	protein_coding	Kbtbd10	utr3	ENSMUSG00000075307	NonProperStrand	5	2	-inf
chr19	7199964	7200004	protein_coding	Macrod1	intron	ENSMUSG00000036278	NonProperStrand	109	chr13	44869632	44869662	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.3758
chr12	41214959	41215022	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	chr5	17776751	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-6.7389
chr9	123461953	123462081	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	64503617	64515345	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	3	-5.9814
chr2	90395158	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr15	58472205	58472224	protein_coding	Fer1l6	intron	ENSMUSG00000037106	ProperStrand	38	1	-10.6421
chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr13	78077380	78077459	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-9.1759
chr16	37652904	37652962	protein_coding	Ndufb4	intron	ENSMUSG00000022820	ProperStrand	9	chr8	73305038	73305103	protein_coding	Mast3	utr5	ENSMUSG00000031833	ProperStrand	91	3	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr13	97190561	97190587	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.2220
chr1	119549183	119549918	LINE	L1_Mus1	L1	chr1L1_Mus1119548993	NonProperStrand	1	chr7	140028058	140028171	protein_coding	Mettl10	intron	ENSMUSG00000030960	ProperStrand	18	1	-inf
chr13	44869604	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr12	103411294	103416255	protein_coding	Slc24a4	intron	ENSMUSG00000041771	NonProperStrand	43	1	-5.1358
chr18	49946396	49946463	LINE	Lx5	L1	chr18Lx549945890	NonProperStrand	1	chr4	129317680	129317736	protein_coding	Txlna	utr5	ENSMUSG00000053841	ProperStrand	9	1	-inf
chr10	12419484	12419502	protein_coding	Utrn	intron	ENSMUSG00000019820	NonProperStrand	15	chr14	20761944	20762027	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	1	-13.0852
chr12	78350926	78351011	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	21434804	21434827	protein_coding	Vps8	utr5	ENSMUSG00000033653	ProperStrand	86	1	-5.1929
chr11	120653931	120654031	protein_coding	Dus1l	intron	ENSMUSG00000025155	ProperStrand	2	chr11	74685981	74688985	protein_coding	Sgsm2	intron	ENSMUSG00000038351	ProperStrand	17	1	-20.8675
chr13	79778912	79779002	LINE	L1MA5	L1	chr13L1MA579778709	NonProperStrand	1	chr13	79779163	79779263	SINE	B3A	B2	chr13B3A79779140	NonProperStrand	1	1	-inf
chr13	97489369	97489444	Other	RMER1B	Other	chr13RMER1B97489338	ProperStrand	25	chr4	145469020	145469079	protein_coding	Gm13235	intron	ENSMUSG00000078500	ProperStrand	7	1	-18.3660
chr9	54490709	54490799	protein_coding	Acsbg1	intron	ENSMUSG00000032281	ProperStrand	10	chr9	103550111	103550213	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-14.0331
chr2	132251428	132251724	lincRNA	4921508D12Rik	intron	ENSMUSG00000027345	NonProperStrand	28	chr4	126180149	126180245	protein_coding	Eif2c4	intron	ENSMUSG00000042500	ProperStrand	92	1	-12.7048
chr6	57283649	57283749	LINE	L1Md_F2	L1	chr6L1Md_F257283047	NonProperStrand	1	chr6	57283958	57284048	LINE	L1Md_F2	L1	chr6L1Md_F257283856	NonProperStrand	1	1	-inf
chr6	102607943	102608033	LTR	RMER17A	ERVK	chr6RMER17A102607809	NonProperStrand	1	chr6	102608230	102608330	Simple_repeat	(GGAGA)n	Simple_repeat	chr6(GGAGA)n102608229	ProperStrand	1	1	-inf
chr9	110143076	110143176	SINE	B1_Mur1	Alu	chr9B1_Mur1110143079	NonProperStrand	1	chr9	110142967	110143056	SINE	RSINE1	B4	chr9RSINE1110142926	ProperStrand	1	1	-inf
chr9	80691281	80691381	LINE	L1_Mm	L1	chr9L1_Mm80691230	ProperStrand	1	chr15	33291884	33291974	protein_coding	Pgcp	intron	ENSMUSG00000039007	NonProperStrand	5	1	-inf
chr17	47323348	47323441	protein_coding	Trerf1	intron	ENSMUSG00000064043	ProperStrand	109	chr7	16218325	16218353	protein_coding	Obox3	intron	ENSMUSG00000066772	ProperStrand	22	1	-12.8575
chr17	40180697	40180787	LINE	Lx6	L1	chr17Lx640180608	ProperStrand	1	chr15	39245333	39245433	protein_coding	Rims2	intron	ENSMUSG00000037386	ProperStrand	43	1	-inf
chrX	114629796	114629896	LINE	L1_Mus2	L1	chrXL1_Mus2114629791	ProperStrand	1	chrX	114629486	114629576	LINE	Lx3_Mus	L1	chrXLx3_Mus114628245	NonProperStrand	1	1	-inf
chr17	67767405	67767495	LINE	L1VL2	L1	chr17L1VL267766560	NonProperStrand	2	chr17	67768376	67769419	SINE	B4A	B4	chr17B4A67768227	ProperStrand	11	2	-inf
chr5	3631778	3631816	protein_coding	Pex1	intron	ENSMUSG00000005907	NonProperStrand	5	chr5	3635771	3635793	protein_coding	Gatad1	intron	ENSMUSG00000007415	ProperStrand	11	1	-21.8628
chr5	146260994	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	1	-6.9599
chr17	39847277	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	80192660	80192781	LTR	ORR1A3-int	MaLR	chr18ORR1A3-int80191652	ProperStrand	8	1	-3.3803
chr5	107427866	107427956	LINE	MusHAL1	L1	chr5MusHAL1107427752	NonProperStrand	1	chr5	107770543	107770643	protein_coding	Brdt	intron	ENSMUSG00000029279	ProperStrand	4	1	-inf
chr2	34675318	34675385	protein_coding	Fbxw2	intron	ENSMUSG00000035949	ProperStrand	14	chr10	11159994	11160051	protein_coding	Epm2a	intron	ENSMUSG00000055493	ProperStrand	13	1	-18.1914
chr14	20456414	20456430	LTR	RodERV21-int	ERV1	chr14RodERV21-int20456143	ProperStrand	2	chrX	104128061	104128198	protein_coding	Lpar4	utr3	ENSMUSG00000049929	NonProperStrand	1	1	-inf
chr11	109011745	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	41098133	41098149	protein_coding	Ube2r2	intron	ENSMUSG00000036241	ProperStrand	9	1	-9.9559
chr7	96509206	96509351	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	chr16	30308259	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-8.9697
chr11	78217536	78217612	protein_coding	Slc13a2	intron	ENSMUSG00000001095	ProperStrand	33	chr13	29941644	29941730	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	1	-9.1511
chr5	140082192	140082292	Satellite	ZP3AR	Satellite	chr5ZP3AR140082184	NonProperStrand	4	chr5	140082358	140082448	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n140082363	NonProperStrand	4	4	-inf
chr19	8723999	8724032	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr7	137031486	137031599	LINE	Lx5	L1	chr7Lx5137031170	ProperStrand	9	1	-16.9404
chr9	31285302	31285393	LTR	MTA_Mm	MaLR	chr9MTA_Mm31285024	ProperStrand	1	chr9	31285440	31285491	LTR	RLTR23	ERV1	chr9RLTR2331285408	ProperStrand	1	1	-inf
chr5	76245179	76245269	LTR	MTEb	MaLR	chr5MTEb76245203	NonProperStrand	1	chr5	76244925	76245025	LTR	RLTR16	ERVK	chr5RLTR1676244943	ProperStrand	1	1	-inf
chr15	34345611	34345701	protein_coding	Matn2	intron	ENSMUSG00000022324	NonProperStrand	33	chr4	141038010	141038110	protein_coding	Spen	intron	ENSMUSG00000040761	ProperStrand	77	1	-12.7304
chr8	90993673	90993773	LINE	L1MA6	L1	chr8L1MA690993639	ProperStrand	1	chr8	112261086	112261176	protein_coding	Atxn1l	intron	ENSMUSG00000069895	NonProperStrand	1	1	-inf
chr8	18761411	18761443	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr2	73193437	73193502	protein_coding	Gpr155	intron	ENSMUSG00000041762	ProperStrand	10	1	-10.5565
chr14	18269288	18269944	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	56	chr12	78350929	78351015	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.0319
chr14	64698091	64698164	protein_coding	Prss55	exon	ENSMUSG00000034623	NonProperStrand	18	chr7	135016983	135017054	protein_coding	Zfp668	intron	ENSMUSG00000049728	NonProperStrand	18	1	-16.8929
chr13	29966796	29966886	SINE	B1_Mur1	Alu	chr13B1_Mur129966781	ProperStrand	4	chr13	29966663	29966763	SINE	ID_B1	B4	chr13ID_B129966536	ProperStrand	7	2	-inf
chr2	53150679	53150769	LINE	Lx2B	L1	chr2Lx2B53148694	NonProperStrand	1	chr2	53146156	53150685	LTR	RLTR31A_Mm	ERVK	chr2RLTR31A_Mm53145671	NonProperStrand	1	1	-inf
chr10	112948661	112948683	LTR	MT2C_Mm	ERVL	chr10MT2C_Mm112948434	ProperStrand	8	chr9	123461822	123461873	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-8.1879
chr15	79965220	79965320	protein_coding	Tab1	intron	ENSMUSG00000022414	NonProperStrand	44	chr14	21499202	21499292	protein_coding	Sec24c	intron	ENSMUSG00000039367	ProperStrand	81	1	-12.0442
chr5	146261005	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	100515114	100515180	protein_coding	Zfp385c	intron	ENSMUSG00000014198	ProperStrand	87	1	-4.3493
chr7	120679012	120679078	protein_coding	Far1	intron	ENSMUSG00000030759	ProperStrand	49	chr19	32256015	32256096	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-10.4746
chr18	14671257	14671305	SINE	B4	B4	chr18B414671018	ProperStrand	1	chr17	66079583	66080887	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	80	1	-inf
chr1	144538857	144538947	LINE	Lx2B	L1	chr1Lx2B144538808	ProperStrand	1	chr1	144538390	144538490	LINE	Lx6	L1	chr1Lx6144538391	ProperStrand	1	1	-inf
chr13	29422255	29422368	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr5	99751304	99751322	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	NonProperStrand	55	1	-8.1236
chr2	115887451	115887541	protein_coding-noncoding	Meis2	utr3	ENSMUSG00000027210	ProperStrand	1	chr2	115887133	115887233	protein_coding	Meis2	utr5	ENSMUSG00000027210	ProperStrand	9	1	-inf
chr16	13826472	13826530	protein_coding	Ntan1	intron	ENSMUSG00000022681	ProperStrand	11	chr11	96005753	96005802	protein_coding	Ttll6	intron	ENSMUSG00000038756	NonProperStrand	44	1	-16.1308
chr17	23823120	23823220	LTR	MT2_Mm	ERVL	chr17MT2_Mm23822986	NonProperStrand	3	chr4	21867339	21867429	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	ProperStrand	29	2	-21.0244
chr5	115289058	115289158	LTR	MYSERV6-int	ERVK	chr5MYSERV6-int115288574	ProperStrand	3	chr4	141171227	141171317	antisense	AI507597	.	ENSMUSG00000073731	ProperStrand	12	1	-21.1865
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr14	118994977	118995003	protein_coding	Abcc4	intron	ENSMUSG00000032849	ProperStrand	24	1	-13.9855
chr17	39847767	39847855	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	12133296	12133329	LTR	RLTR26	ERVK	chr18RLTR2612133166	ProperStrand	1	1	-inf
chr16	3901880	3901913	protein_coding	Nat15	utr5	ENSMUSG00000005982	ProperStrand	13	chr2	153118460	153118529	protein_coding	Kif3b	intron	ENSMUSG00000027475	ProperStrand	32	1	-16.4138
chr3	97865546	97865590	protein_coding	Notch2	intron	ENSMUSG00000027878	NonProperStrand	7	chrX	75760870	75760960	protein_coding	Prrg1	intron	ENSMUSG00000047996	ProperStrand	19	1	-18.4879
chr17	39847082	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	37098299	37098397	protein_coding	Vwa3b	intron	ENSMUSG00000050122	ProperStrand	7	1	-3.6430
chr18	35252649	35252683	SINE	B1F	Alu	chr18B1F35252561	ProperStrand	3	chr8	18699474	18699527	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-13.2613
chr8	46529524	46529614	LTR	IAPEz-int	ERVK	chr8IAPEz-int46529276	ProperStrand	1	chr2	29247560	29247660	protein_coding	Med27	intron	ENSMUSG00000026799	ProperStrand	19	1	-inf
chr6	3201508	3201536	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	54190150	54190168	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-3.2230
chr8	79707273	79708447	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	chr12	100130773	100130854	protein_coding	Eml5	intron	ENSMUSG00000051166	ProperStrand	43	1	-11.5510
chr11	69605771	69605803	protein_coding	Chrnb1	intron	ENSMUSG00000041189	ProperStrand	8	chr6	93728953	93728995	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-10.3951
chr6	39466432	39466522	protein_coding	Dennd2a	intron	ENSMUSG00000038456	ProperStrand	103	chr12	105031230	105031330	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	2	-12.9494
chr5	110489467	110489567	LTR	RLTR22_Mur	ERVK	chr5RLTR22_Mur110489289	NonProperStrand	4	chr5	110488798	110488888	SINE	B1_Mm	Alu	chr5B1_Mm110488803	ProperStrand	1	1	-inf
chr13	97190564	97190614	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr11	23361608	23361676	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-3.3559
chr2	57364301	57364567	LINE	L1_Mus2	L1	chr2L1_Mus257364508	NonProperStrand	1	chr2	57367388	57367488	LTR	RLTR25B	ERVK	chr2RLTR25B57366824	ProperStrand	5	1	-inf
chr9	31122447	31123780	protein_coding-noncoding	Prdm10	utr5	ENSMUSG00000042496	NonProperStrand	9	chr9	31122246	31123877	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	3	-inf
chr5	146260994	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	49236473	49236597	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	4	-9.1750
chr5	36610829	36610893	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	chr6	142858051	142858109	protein_coding	St8sia1	intron	ENSMUSG00000030283	ProperStrand	47	1	-10.1606
chr8	91376277	91376367	LTR	MTC	MaLR	chr8MTC91376025	NonProperStrand	1	chr8	91376370	91376470	LTR	ORR1D1	MaLR	chr8ORR1D191376364	NonProperStrand	1	1	-inf
chr19	8723994	8724062	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr7	133067567	133067607	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-6.1311
chr5	33511348	33511438	LINE	L1MC3	L1	chr5L1MC333510876	NonProperStrand	69	chr5	33520420	33520520	LTR	MTA_Mm	MaLR	chr5MTA_Mm33520344	NonProperStrand	42	1	-12.4615
chr3	116804899	116805034	LINE	Lx8	L1	chr3Lx8116804779	ProperStrand	1	chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	1	-inf
chr6	132341331	132341431	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int132341258	ProperStrand	1	chr6	132340976	132341066	LTR	RLTR13A	ERVK	chr6RLTR13A132340404	NonProperStrand	1	1	-inf
chr19	10199470	10199570	LINE	Lx4B	L1	chr19Lx4B10199348	ProperStrand	1	chr19	10199564	10199654	SINE	B4A	B4	chr19B4A10199548	NonProperStrand	3	1	-inf
chr14	21423557	21447881	SINE	B2_Mm1t	B2	chr14B2_Mm1t21442857	ProperStrand	1	chr14	21381601	21423576	protein_coding	Usp54	intron	ENSMUSG00000034235	NonProperStrand	7	1	-inf
chr5	124023327	124023374	SINE	B4	B4	chr5B4124023223	ProperStrand	1	chr5	117450592	117450634	SINE	MIRb	MIR	chr5MIRb117450503	ProperStrand	1	1	-inf
chr17	39847701	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	114482007	114482050	SINE	B1_Mm	Alu	chr8B1_Mm114482013	ProperStrand	1	1	-inf
chr17	39847298	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	27556495	27556528	protein_coding	Cyp2b19	utr3	ENSMUSG00000066704	ProperStrand	1	1	-inf
chr13	17939914	17939958	LINE	L1Md_A	L1	chr13L1Md_A17939391	ProperStrand	2	chr1	72849258	72849602	Low_complexity	CT-rich	Low_complexity	chr1CT-rich72849155	ProperStrand	18	2	-inf
chr16	50543610	50543723	lincRNA	G730013B05Rik	intron	ENSMUSG00000085617	ProperStrand	33	chr12	41390906	41390950	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	2	-15.5748
chr7	19357178	19357230	LINE	L1_Mus1	L1	chr7L1_Mus119355869	ProperStrand	8	chr13	21516577	21516625	protein_coding	Pgbd1	intron	ENSMUSG00000055313	ProperStrand	5	1	-22.1864
chr13	42155685	42155741	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	54	chr16	11590232	11590310	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-9.2583
chr18	69374725	69374798	LTR	MTEa	MaLR	chr18MTEa69374740	NonProperStrand	1	chr18	69383012	69383054	Simple_repeat	(GGAA)n	Simple_repeat	chr18(GGAA)n69382980	ProperStrand	1	1	-inf
chr7	141825295	141825395	LINE	L1_Mur2	L1	chr7L1_Mur2141825240	NonProperStrand	1	chr7	141824959	141825049	LINE	Lx4B	L1	chr7Lx4B141824537	NonProperStrand	1	1	-inf
chr4	126934598	126934656	Low_complexity	CT-rich	Low_complexity	chr4CT-rich126934610	NonProperStrand	1	chr4	126934726	126934779	SINE	B1_Mur4	Alu	chr4B1_Mur4126934735	ProperStrand	1	1	-inf
chr4	16216278	16216376	LINE	Lx2	L1	chr4Lx216215933	NonProperStrand	1	chr17	39846816	39847802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	162309288	162309346	LTR	IAPEz-int	ERVK	chrXIAPEz-int162307928	NonProperStrand	1	chr3	84894054	84894140	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-inf
chr2	126718091	126720028	protein_coding	2010106G01Rik	utr3	ENSMUSG00000027366	NonProperStrand	22	chr9	68802089	68802146	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-11.6199
chr5	104776967	104777067	LINE	L1MA4	L1	chr5L1MA4104776849	ProperStrand	7	chrX	162781162	162782290	protein_coding	Gpm6b	intron	ENSMUSG00000031342	NonProperStrand	61	7	-inf
chr19	30290985	30291085	SINE	B1_Mus1	Alu	chr19B1_Mus130290988	NonProperStrand	1	chr19	30291202	30291292	SINE	B2_Mm2	B2	chr19B2_Mm230291191	ProperStrand	1	1	-inf
chr2	20751671	20751761	LINE	Lx5	L1	chr2Lx520751277	ProperStrand	2	chr2	20751755	20751855	LINE	Lx5	L1	chr2Lx520751752	ProperStrand	2	2	-inf
chr19	30106827	30106859	protein_coding	Uhrf2	intron	ENSMUSG00000024817	NonProperStrand	92	chr19	10606938	10607855	protein_coding	Cpsf7	exon	ENSMUSG00000034820	ProperStrand	82	1	-10.5352
chr6	38566335	38566409	LTR	MYSERV6-int	ERVK	chr6MYSERV6-int38565907	NonProperStrand	5	chr13	97190562	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.2290
chr7	115859884	115859984	LINE	MusHAL1	L1	chr7MusHAL1115859256	ProperStrand	1	chr2	67232751	67232841	antisense	Gm13599	.	ENSMUSG00000087043	NonProperStrand	7	1	-inf
chr14	62359705	62359734	LTR	MTA_Mm	MaLR	chr14MTA_Mm62359689	NonProperStrand	1	chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr10	128830263	128830404	LTR	IAPEz-int	ERVK	chr10IAPEz-int128826236	NonProperStrand	10	1	-13.4734
chr10	39435948	39435995	lincRNA	E130307A14Rik	intron	ENSMUSG00000087177	NonProperStrand	100	chr7	99978225	99978335	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-8.4974
chr17	39848008	39848064	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	104903729	104903777	SINE	B3A	B2	chr3B3A104903642	NonProperStrand	1	1	-inf
chr3	88948734	88948834	protein_coding	Pklr	exon	ENSMUSG00000041237	ProperStrand	1	chr13	12540112	12540202	protein_coding	Lgals8	intron	ENSMUSG00000057554	NonProperStrand	2	1	-inf
chr11	116473418	116473508	protein_coding	Rhbdf2	intron	ENSMUSG00000020806	ProperStrand	55	chr1	136364889	136364954	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-10.5547
chr15	95504244	95504334	LINE	L1_Mur3	L1	chr15L1_Mur395503056	NonProperStrand	1	chr15	95504401	95504501	LINE	L1_Mur3	L1	chr15L1_Mur395504404	NonProperStrand	1	1	-inf
chr14	27171308	27171329	LTR	MTC-int	MaLR	chr14MTC-int27170927	NonProperStrand	2	chr14	27153020	27153111	LTR	RodERV21-int	ERV1	chr14RodERV21-int27152986	ProperStrand	3	1	-20.8297
chr9	123461965	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	25704885	25704930	protein_coding	Arhgef1	intron	ENSMUSG00000040940	ProperStrand	5	1	-5.8308
chr3	135605137	135605155	SINE	RSINE1	B4	chr3RSINE1135605065	NonProperStrand	8	chr6	65815108	65815226	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-13.6995
chr12	104748621	104748706	SINE	B4A	B4	chr12B4A104748608	NonProperStrand	1	chr5	75004463	75004510	protein_coding	Lnx1	intron	ENSMUSG00000029228	ProperStrand	20	1	-inf
chr17	56286146	56286246	SINE	ID_B1	B4	chr17ID_B156286063	ProperStrand	4	chr17	56286257	56286499	SINE	MIRm	MIR	chr17MIRm56286355	NonProperStrand	1	1	-inf
chr9	78356730	78356820	SINE	B1F	Alu	chr9B1F78356711	NonProperStrand	1	chr9	78357156	78357256	SINE	B3	B2	chr9B378357136	ProperStrand	1	1	-inf
chr17	39846428	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	87861141	87862629	protein_coding	Srsf1	exon	ENSMUSG00000018379	ProperStrand	5	2	-5.8332
chr12	50784425	50784515	LINE	Lx5	L1	chr12Lx550783623	NonProperStrand	1	chr12	67667942	67668042	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr19	41934792	41934874	SINE	PB1D10	Alu	chr19PB1D1041934809	ProperStrand	1	chr19	41940703	41941542	protein_coding	Rrp12	intron	ENSMUSG00000035049	NonProperStrand	6	1	-inf
chr11	61161345	61161398	protein_coding	Slc47a1	intron	ENSMUSG00000010122	ProperStrand	20	chr11	61153992	61154061	protein_coding	Slc47a2	intron	ENSMUSG00000069855	ProperStrand	19	1	-16.5700
chr9	98110053	98110153	LINE	L1M4c	L1	chr9L1M4c98110073	ProperStrand	3	chr9	97629320	97629410	protein_coding	Clstn2	intron	ENSMUSG00000032452	ProperStrand	20	1	-23.6265
chr7	34168380	34168479	LINE	L1_Mus3	L1	chr7L1_Mus334168371	ProperStrand	1	chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	152634973	152634994	protein_coding	Bcl2l1	intron	ENSMUSG00000007659	NonProperStrand	2	chr3	139011867	139012001	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	NonProperStrand	81	1	-18.6285
chr15	43250174	43251506	LTR	MTEa-int	MaLR	chr15MTEa-int43249849	ProperStrand	1	chr3	129547409	129547509	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-inf
chr17	39846649	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	105061711	105061778	SINE	B3	B2	chr4B3105061712	ProperStrand	1	1	-inf
chr1	91291358	91291409	LINE	L1MC4	L1	chr1L1MC491291275	ProperStrand	1	chr1	91291733	91291773	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n91291744	ProperStrand	1	1	-inf
chr1	89514649	89514713	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int89514121	ProperStrand	16	chr8	92434361	92434380	LTR	RLTR20A2	ERVK	chr8RLTR20A292434295	NonProperStrand	1	1	-inf
chr2	144373347	144373406	protein_coding	Rbbp9	intron	ENSMUSG00000027428	NonProperStrand	10	chr2	144393611	144393648	protein_coding	Sec23b	intron	ENSMUSG00000027429	ProperStrand	18	1	-18.0457
chr4	33853545	33853635	LINE	L1_Mus2	L1	chr4L1_Mus233853507	ProperStrand	1	chr4	33853347	33853447	LINE	Lx7	L1	chr4Lx733852502	ProperStrand	1	1	-inf
chr2	22744863	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	65872724	65872782	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-4.4159
chr5	21754864	21754916	protein_coding	Reln	intron	ENSMUSG00000042453	NonProperStrand	79	chr1	59652966	59653008	protein_coding	Gm973	intron	ENSMUSG00000047361	NonProperStrand	30	1	-12.8711
chr17	39847445	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	95935420	95956661	protein_coding	Ophn1	intron	ENSMUSG00000031214	ProperStrand	39	5	-3.1220
chr2	166080041	166080071	LTR	ORR1B1	MaLR	chr2ORR1B1166080007	ProperStrand	3	chr15	88825937	88825996	protein_coding	Mov10l1	intron	ENSMUSG00000015365	ProperStrand	151	1	-16.5684
chr17	39846411	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	143276147	143276202	pseudogene	Gm13086	.	ENSMUSG00000081448	NonProperStrand	1	1	-inf
chr9	37501118	37501218	DNA	Tigger5	MER2_type	chr9Tigger537501039	NonProperStrand	1	chr17	31558859	31558949	protein_coding	Pde9a	intron	ENSMUSG00000041119	NonProperStrand	22	1	-inf
chr9	122286362	122286396	protein_coding	Abhd5	intron	ENSMUSG00000032540	NonProperStrand	9	chr1	38050200	38050284	protein_coding	Txndc9	intron	ENSMUSG00000058407	NonProperStrand	7	1	-19.8944
chr6	39418505	39418569	protein_coding-noncoding	Dennd2a	utr3	ENSMUSG00000038456	ProperStrand	8	chr6	39418132	39418217	protein_coding	Dennd2a	intron	ENSMUSG00000038456	ProperStrand	103	4	-22.0144
chr2	30071441	30071518	LINE	L1M5	L1	chr2L1M530071423	ProperStrand	8	chr11	115669486	115669547	protein_coding	Caskin2	intron	ENSMUSG00000034471	ProperStrand	36	1	-17.2733
chr17	35384413	35384513	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	chr12	67667899	67667989	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-12.9873
chr11	50298600	50298700	LINE	L1M4	L1	chr11L1M450298503	NonProperStrand	1	chr11	50298717	50298807	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n50298742	NonProperStrand	1	1	-inf
chr7	5074855	5075479	SINE	B1_Mus1	Alu	chr7B1_Mus15075067	NonProperStrand	3	chr17	3695357	3695489	protein_coding	Nox3	exon	ENSMUSG00000023802	NonProperStrand	5	1	-inf
chr13	53270731	53270804	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.0796
chr1	84724424	84724463	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr5	125297333	125298650	protein_coding	Dnahc10	intron	ENSMUSG00000038011	NonProperStrand	81	1	-9.9617
chr17	39848598	39848684	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr12	13230367	13231498	protein_coding	Ddx1	intron	ENSMUSG00000037149	ProperStrand	27	1	-3.0710
chr12	102136846	102136862	protein_coding	Gpr68	intron	ENSMUSG00000047415	ProperStrand	5	chr9	15315524	15315587	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-15.6351
chr12	108925595	108925624	LTR	RLTR16	ERVK	chr12RLTR16108925530	ProperStrand	14	chr15	50667887	50668008	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	2	-20.1983
chr17	64048321	64048385	LTR	RLTR10C	ERVK	chr17RLTR10C64048069	ProperStrand	3	chr10	128098976	128098997	SINE	B3	B2	chr10B3128098942	ProperStrand	1	1	-inf
chr14	79862457	79862485	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	30	chr13	113843579	113843620	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	1	-11.0897
chr15	99207028	99207071	SINE	B1_Mus2	Alu	chr15B1_Mus299206971	ProperStrand	1	chr17	39843482	39843578	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr9	59884508	59884524	protein_coding	Thsd4	intron	ENSMUSG00000032289	ProperStrand	50	chr7	96511619	96511688	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-9.2679
chr17	39847037	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	117449352	117449382	Simple_repeat	(GGGA)n	Simple_repeat	chr5(GGGA)n117449359	ProperStrand	1	1	-inf
chr9	21401344	21401362	SINE	B1_Mus2	Alu	chr9B1_Mus221401227	ProperStrand	1	chr6	49200236	49200264	protein_coding	Tra2a	intron	ENSMUSG00000029817	ProperStrand	51	1	-inf
chr17	39848501	39848596	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr6	29911104	29911121	pseudogene	Gm13724	.	ENSMUSG00000082036	NonProperStrand	1	1	-inf
chr6	128354764	128354805	protein_coding	Nrip2	intron	ENSMUSG00000001520	NonProperStrand	12	chr4	54971430	54971516	protein_coding	Zfp462	intron	ENSMUSG00000060206	ProperStrand	174	1	-13.1706
chr3	32343551	32343604	protein_coding	Pik3ca	intron	ENSMUSG00000027665	NonProperStrand	80	chr8	107059683	107059758	protein_coding	Car7	intron	ENSMUSG00000031883	ProperStrand	12	1	-14.7342
chr17	39847330	39848095	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	3200794	3201597	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	3001	-inf
chr2	22744886	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	120996626	120996733	protein_coding	Mical3	intron	ENSMUSG00000003178	ProperStrand	108	1	-5.6508
chr2	130277696	130277766	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	chr9	40803993	40804082	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.8811
chrX	153550513	153550603	LINE	L1_Mus1	L1	chrXL1_Mus1153546808	NonProperStrand	1	chrX	152020081	152020181	protein_coding	Ptchd1	intron	ENSMUSG00000041552	ProperStrand	4	1	-inf
chr17	70963685	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	35312846	35312908	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-3.1950
chr9	123462134	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	49684298	49684398	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	13	1	-3.8693
chr1	63249020	63249088	lincRNA	Gm11607	intron	ENSMUSG00000086730	ProperStrand	24	chr19	24261563	24261641	protein_coding	Tjp2	intron	ENSMUSG00000024812	NonProperStrand	8	1	-18.1966
chr18	88092785	88092875	LINE	L1_Mus2	L1	chr18L1_Mus288092724	NonProperStrand	1	chr18	88093025	88093125	Other	RMER1A	Other	chr18RMER1A88092913	NonProperStrand	1	1	-inf
chr3	132698384	132698433	protein_coding	Gstcd	intron	ENSMUSG00000028018	NonProperStrand	33	chr3	153076392	153076495	protein_coding	St6galnac3	intron	ENSMUSG00000052544	NonProperStrand	18	1	-15.6845
chr3	105165283	105165301	LINE	L1MEe	L1	chr3L1MEe105165097	NonProperStrand	1	chr13	97190563	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr2	180217649	180217739	DNA	URR1A	MER1_type	chr2URR1A180217540	NonProperStrand	3	chr2	180216695	180216795	Low_complexity	CT-rich	Low_complexity	chr2CT-rich180216636	NonProperStrand	1	1	-inf
chr7	137034438	137034516	LINE	L1_Rod	L1	chr7L1_Rod137034385	ProperStrand	2	chr7	137033278	137033346	LINE	Lx5	L1	chr7Lx5137031170	ProperStrand	9	1	-inf
chr6	149339513	149339613	DNA	MER58B	MER1_type	chr6MER58B149339449	NonProperStrand	1	chr6	149340084	149340174	LTR	RLTR6_Mm	ERV1	chr6RLTR6_Mm149340041	ProperStrand	1	1	-inf
chr1	91036722	91036763	protein_coding	Sh3bp4	intron	ENSMUSG00000036206	ProperStrand	5	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-16.9808
chr9	123461906	123461975	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	40663024	40663082	protein_coding	Kctd16	intron	ENSMUSG00000051401	NonProperStrand	7	1	-5.1121
chr17	39843589	39843632	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	90415235	90415538	protein_coding	S100a5	exon	ENSMUSG00000001023	NonProperStrand	4	1	-7.9732
chr17	26141064	26141099	protein_coding-noncoding	Rab11fip3	utr3	ENSMUSG00000037098	NonProperStrand	2	chr17	26141566	26141667	protein_coding	Rab11fip3	intron	ENSMUSG00000037098	NonProperStrand	45	1	-19.8306
chr9	19657901	19658001	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr12	54133374	54133464	protein_coding	Akap6	intron	ENSMUSG00000061603	ProperStrand	14	1	-13.7130
chr2	29181566	29181602	LINE	L1MB3	L1	chr2L1MB329181514	NonProperStrand	2	chr9	105314749	105323131	protein_coding	Atp2c1	intron	ENSMUSG00000032570	ProperStrand	10	1	-20.4467
chr1	46646225	46646325	LINE	L1Md_T	L1	chr1L1Md_T46645438	NonProperStrand	1	chr1	46646573	46646663	LTR	RMER17A	ERVK	chr1RMER17A46646446	NonProperStrand	1	1	-inf
chr2	121986432	121986522	protein_coding	Patl2	intron	ENSMUSG00000027233	ProperStrand	5	chr18	33193458	33193558	protein_coding	Camk4	intron	ENSMUSG00000038128	NonProperStrand	36	1	-18.3288
chr2	175137234	175137308	LINE	L1_Mus3	L1	chr2L1_Mus3175136858	ProperStrand	1	chr15	34929985	34930069	protein_coding	Stk3	intron	ENSMUSG00000022329	ProperStrand	45	1	-inf
chr9	25544741	25544800	LTR	MER21B	ERV1	chr9MER21B25544635	NonProperStrand	2	chr8	12653603	12653683	protein_coding	Tubgcp3	intron	ENSMUSG00000000759	ProperStrand	46	2	-inf
chr2	22744850	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	53841487	53841560	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-4.2909
chr17	39847659	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	92933786	92933900	pseudogene	Gm18779	.	ENSMUSG00000092426	NonProperStrand	4	1	-3.7035
chr5	146261020	146261042	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	11906106	11907404	protein_coding	Phf14	intron	ENSMUSG00000029629	NonProperStrand	12	1	-8.2893
chr15	18357654	18357685	LINE	L1Md_F2	L1	chr15L1Md_F218355198	ProperStrand	1	chr17	39846666	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	128104925	128105025	SINE	B1_Mur1	Alu	chr10B1_Mur1128104874	ProperStrand	1	chr10	128105196	128105286	SINE	RSINE1	B4	chr10RSINE1128105206	ProperStrand	1	1	-inf
chr9	119911083	119912415	SINE	B1_Mur1	Alu	chr9B1_Mur1119912316	ProperStrand	3	chr9	119917271	119917368	SINE	B1_Mus1	Alu	chr9B1_Mus1119917255	NonProperStrand	2	2	-inf
chr9	110281296	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	135779831	135779847	protein_coding	Asap3	intron	ENSMUSG00000036995	NonProperStrand	1	1	-inf
chr17	39848300	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	141117808	141117850	SINE	PB1D9	Alu	chr4PB1D9141117796	NonProperStrand	1	1	-inf
chr11	40689987	40690077	DNA	RCHARR1	MER1_type	chr11RCHARR140689596	NonProperStrand	2	chr17	71657345	71657487	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	1	-17.8276
chr5	31076808	31076837	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-6.8749
chr3	5952000	5952100	LINE	Lx2	L1	chr3Lx25951979	ProperStrand	1	chr3	5951821	5951911	LINE	MusHAL1	L1	chr3MusHAL15951445	NonProperStrand	1	1	-inf
chr14	54617797	54617892	LINE	L1MCa	L1	chr14L1MCa54617204	NonProperStrand	15	chr9	118674951	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.7589
chr3	104802466	104802563	SINE	B3	B2	chr3B3104802373	ProperStrand	2	chr9	40803581	40803625	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-14.8938
chr10	4266575	4266665	LINE	L1_Mus3	L1	chr10L1_Mus34266383	ProperStrand	20	chr10	4313756	4313856	LTR	MTB	MaLR	chr10MTB4313454	NonProperStrand	5	5	-inf
chr13	52866605	52866621	LTR	ORR1E	MaLR	chr13ORR1E52866356	ProperStrand	1	chr17	39847747	39847795	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	1	-inf
chr11	83394884	83394966	LTR	MTE2a	MaLR	chr11MTE2a83394644	ProperStrand	1	chr17	39847734	39847802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	91917321	91917338	protein_coding	Itsn1	utr3	ENSMUSG00000022957	ProperStrand	147	chr1	89608853	89608966	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-6.2649
chr13	49706788	49706874	protein_coding	Ogn	intron	ENSMUSG00000021390	ProperStrand	39	chr2	90395137	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-10.5895
chr2	156008940	156008971	SINE	B2_Mm2	B2	chr2B2_Mm2156008912	ProperStrand	1	chr2	156008593	156008634	SINE	PB1D9	Alu	chr2PB1D9156008507	ProperStrand	1	1	-inf
chr3	23314220	23314320	LINE	L1_Mur3	L1	chr3L1_Mur323311896	ProperStrand	3	chr9	19657993	19658083	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	3	-inf
chr16	11219928	11219970	lincRNA	2610020C07Rik	intron	ENSMUSG00000091524	ProperStrand	17	chr2	29729526	29729614	protein_coding	Cercam	intron	ENSMUSG00000039787	ProperStrand	31	1	-15.9338
chr2	130866539	130866629	protein_coding-noncoding	Gfra4	utr3	ENSMUSG00000027316	ProperStrand	1	chr2	89678592	89678692	protein_coding	Olfr1256	intron	ENSMUSG00000075073	ProperStrand	1	1	-inf
chr4	95664219	95664287	protein_coding	Hook1	intron	ENSMUSG00000028572	ProperStrand	23	chr17	27563261	27563294	protein_coding	Grm4	utr3	ENSMUSG00000063239	NonProperStrand	125	1	-12.4915
chr9	110589212	110589308	protein_coding	Ccdc12	intron	ENSMUSG00000019659	ProperStrand	25	chr4	126184947	126184975	protein_coding	Eif2c4	intron	ENSMUSG00000042500	ProperStrand	92	1	-12.9366
chr6	49236471	49236619	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr9	123461792	123462176	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	83	-21.7178
chr2	5379278	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr12	118307748	118307818	protein_coding	Ptprn2	intron	ENSMUSG00000056553	ProperStrand	87	1	-3.8454
chr17	28960623	28960713	protein_coding-noncoding	Brpf3	utr5	ENSMUSG00000063952	ProperStrand	4	chr17	28960714	28960814	protein_coding	Brpf3	intron	ENSMUSG00000063952	ProperStrand	44	4	-inf
chr11	74911016	74911049	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	chr9	15314843	15314938	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-8.5413
chr13	73811893	73811965	protein_coding	Slc6a18	exon	ENSMUSG00000021612	NonProperStrand	42	chr13	97188678	97188751	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8202
chr2	119179364	119179886	protein_coding	Chac1	utr3	ENSMUSG00000027313	ProperStrand	1	chr9	63443142	63443232	protein_coding	Iqch	intron	ENSMUSG00000037801	NonProperStrand	1	1	-inf
chr17	39846658	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	44743959	44752171	protein_coding	Ube4a	intron	ENSMUSG00000059890	ProperStrand	16	3	-3.8697
chr13	4636390	4636480	LTR	MT2_Mm	ERVL	chr13MT2_Mm4636325	NonProperStrand	1	chr2	112706538	112706638	protein_coding	Ryr3	intron	ENSMUSG00000057378	ProperStrand	31	1	-inf
chr2	35670853	35670935	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	chr5	147080024	147080088	protein_coding	Cdk8	intron	ENSMUSG00000029635	ProperStrand	81	1	-7.0787
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr19	23955815	23955906	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	1	-10.9872
chr17	39847842	39847913	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	53708542	53708623	protein_coding	Smc3	intron	ENSMUSG00000024974	ProperStrand	5	1	-3.2379
chr12	7901147	7901237	LINE	L1_Mur1	L1	chr12L1_Mur17901069	NonProperStrand	1	chr12	7900966	7901066	LINE	Lx3C	L1	chr12Lx3C7900627	ProperStrand	1	1	-inf
chr10	7649200	7649290	protein_coding	Tab2	intron	ENSMUSG00000015755	ProperStrand	37	chr6	88503403	88503503	protein_coding	Kbtbd12	intron	ENSMUSG00000033182	ProperStrand	28	1	-14.5434
chr17	39846901	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	33658632	33658722	SINE	B3	B2	chr5B333658488	NonProperStrand	2	1	-5.3533
chr2	29627145	29627209	protein_coding	Trub2	intron	ENSMUSG00000039826	NonProperStrand	115	chr2	29664286	29664357	protein_coding	Slc27a4	intron	ENSMUSG00000059316	ProperStrand	43	2	-17.9167
chr16	35031371	35031468	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	chr11	48800884	48800933	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-7.0904
chr12	52522948	52523078	protein_coding	Scfd1	intron	ENSMUSG00000020952	ProperStrand	18	chr9	123461957	123461984	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.2529
chr9	123461881	123462033	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr17	33824327	33824472	protein_coding	March2	utr3	ENSMUSG00000079557	ProperStrand	31	2	-4.1009
chr2	150329064	150329164	LINE	L1Md_F2	L1	chr2L1Md_F2150327805	NonProperStrand	1	chr2	150332255	150332345	LINE	L1Md_T	L1	chr2L1Md_T150329272	NonProperStrand	4	1	-inf
chr14	34692652	34692698	LINE	L1_Mur3	L1	chr14L1_Mur334692574	NonProperStrand	3	chrX	20411156	20411217	protein_coding	Araf	intron	ENSMUSG00000001127	NonProperStrand	2	1	-20.2824
chr17	39847510	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	13550805	13550835	protein_coding	1700029H14Rik	utr3	ENSMUSG00000031452	NonProperStrand	5	1	-3.2379
chr14	24497699	24497767	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	chr11	4818565	4820397	pseudogene	AA413626	.	ENSMUSG00000084381	NonProperStrand	7	2	-inf
chr14	122181717	122181743	protein_coding	Dock9	intron	ENSMUSG00000025558	NonProperStrand	173	chr14	122311374	122311410	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	2	-13.6088
chr5	134452259	134452287	LTR	MTC	MaLR	chr5MTC134452202	NonProperStrand	1	chr5	134454260	134454387	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n134454207	NonProperStrand	2	1	-inf
chr4	139420567	139421096	SINE	B2_Mm2	B2	chr4B2_Mm2139420909	ProperStrand	1	chr3	133164171	133164190	protein_coding	Tet2	intron	ENSMUSG00000040943	NonProperStrand	3	1	-inf
chr11	74867660	74867708	protein_coding	Smg6	intron	ENSMUSG00000038290	NonProperStrand	52	chr1	182279701	182282662	protein_coding	Itpkb	intron	ENSMUSG00000038855	NonProperStrand	42	1	-13.0320
chr1	89506940	89506971	DNA	Tigger5	MER2_type	chr1Tigger589506847	ProperStrand	1	chr3	35962039	35962120	LINE	L1_Mur1	L1	chr3L1_Mur135961932	ProperStrand	1	1	-inf
chr12	102601792	102601863	LINE	L1MA4	L1	chr12L1MA4102601587	NonProperStrand	2	chr12	102601371	102601452	LINE	L1VL4	L1	chr12L1VL4102601072	ProperStrand	6	1	-inf
chr2	154559988	154560084	lincRNA	Gm14216	intron	ENSMUSG00000085691	ProperStrand	55	mmu-miR-106b-5p	0	21	miRNA	mmu-miR-106b-5p	.	mmu-miR-106b-5p	ProperStrand	2	1	-19.2955
chr9	37513008	37513108	LINE	Lx4B	L1	chr9Lx4B37511549	NonProperStrand	18	chr9	21755704	21755794	SINE	B3	B2	chr9B321755686	ProperStrand	4	2	-22.3603
chr12	111297162	111297209	LINE	L1MEc	L1	chr12L1MEc111296864	NonProperStrand	3	chr12	111297346	111297450	SINE	B3	B2	chr12B3111297236	NonProperStrand	3	3	-inf
chr14	118684734	118684834	LINE	L1Md_F2	L1	chr14L1Md_F2118684354	NonProperStrand	3	chr14	118684868	118684958	SINE	B1_Mur4	Alu	chr14B1_Mur4118684839	NonProperStrand	3	3	-inf
chr16	18795931	18797392	protein_coding	Cdc45	intron	ENSMUSG00000000028	ProperStrand	28	chr9	110281345	110281367	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.0952
chr7	27837497	27837597	LINE	L1Md_F2	L1	chr7L1Md_F227836847	NonProperStrand	1	chr7	27837901	27837991	LINE	L1_Mus2	L1	chr7L1_Mus227837834	NonProperStrand	1	1	-inf
chr19	7274365	7274926	protein_coding-noncoding	Otub1	utr3	ENSMUSG00000024767	NonProperStrand	8	chr19	7274450	7275003	protein_coding	Otub1	intron	ENSMUSG00000024767	NonProperStrand	11	2	-inf
chr13	44869596	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr3	36089537	36089599	protein_coding	Qrfpr	intron	ENSMUSG00000058400	NonProperStrand	16	1	-7.1067
chr4	132352758	132352858	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr4	132352891	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	276	10	-inf
chr6	50577040	50577170	LINE	L1_Mm	L1	chr6L1_Mm50576924	NonProperStrand	1	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-inf
chrX	99422480	99422580	LINE	L1Md_T	L1	chrXL1Md_T99422509	NonProperStrand	1	chrX	99422338	99422428	LTR	MT2A	ERVL	chrXMT2A99422257	ProperStrand	1	1	-inf
chr14	16952293	16952313	LINE	L1Md_A	L1	chr14L1Md_A16950456	NonProperStrand	1	chr6	98992446	98992531	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	1	-inf
chr11	82950443	82950533	LINE	Lx8	L1	chr11Lx882950450	NonProperStrand	1	chr11	82950732	82950832	LTR	MTC	MaLR	chr11MTC82950523	ProperStrand	1	1	-inf
chr11	68903737	68903776	protein_coding	Vamp2	utr3	ENSMUSG00000020894	ProperStrand	37	chr7	99479565	99479614	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-8.3947
chr10	81503533	81503627	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int81503258	ProperStrand	5	chr9	123462122	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr6	58676955	58676987	LINE	L1_Rod	L1	chr6L1_Rod58676621	ProperStrand	1	chr17	39846883	39846929	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr18	35214916	35215006	SINE	B1_Mus2	Alu	chr18B1_Mus235214890	NonProperStrand	1	chr18	35215015	35215115	SINE	PB1	Alu	chr18PB135215040	NonProperStrand	1	1	-inf
chr10	41520346	41520428	protein_coding	Cep57l1	intron	ENSMUSG00000019813	NonProperStrand	53	chr1	181985439	181985499	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-8.2816
chr17	39847260	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	6007356	6007541	protein_coding	Capn1	exon	ENSMUSG00000024942	ProperStrand	8	1	-3.3803
chr12	110562471	110562519	LINE	Lx9	L1	chr12Lx9110562475	ProperStrand	1	chr14	45176591	45176668	protein_coding	Gm5624	utr3	ENSMUSG00000092165	ProperStrand	2	1	-inf
chr10	34168952	34169016	LINE	L2	L2	chr10L234168834	NonProperStrand	1	chr1	24067244	24067273	protein_coding	Fam135a	intron	ENSMUSG00000026153	ProperStrand	12	1	-inf
chr17	38003436	38003545	LTR	ORR1A4-int	MaLR	chr17ORR1A4-int38002774	ProperStrand	2	chr17	38009160	38009191	SINE	B3	B2	chr17B338009089	ProperStrand	1	1	-inf
chr15	17471932	17472022	LINE	L1_Mus3	L1	chr15L1_Mus317471075	ProperStrand	1	chr15	17472142	17472242	LTR	MTA_Mm	MaLR	chr15MTA_Mm17472112	ProperStrand	1	1	-inf
chr2	22744845	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	117154535	117154583	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-4.1184
chr1	156067461	156067477	LTR	ORR1B1-int	MaLR	chr1ORR1B1-int156067429	ProperStrand	1	chr9	123462076	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	36478758	36478833	antisense	Fer1l5	.	ENSMUSG00000037432	ProperStrand	2	chr1	36479281	36479358	protein_coding	Lman2l	utr3	ENSMUSG00000001143	NonProperStrand	5	1	-inf
mmu-miR-294-3p	0	22	miRNA	mmu-miR-294-3p	.	mmu-miR-294-3p	ProperStrand	6	chr1	180938139	180938222	protein_coding	Smyd3	intron	ENSMUSG00000055067	NonProperStrand	144	1	-15.0279
chr7	134927791	134927895	protein_coding	Setd1a	intron	ENSMUSG00000042308	ProperStrand	59	chr4	25615283	25615309	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-11.9586
chr4	53472341	53472441	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	chr3	122508435	122508525	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	2	-13.7472
chr16	58463845	58463935	protein_coding-noncoding	Dcbld2	utr5	ENSMUSG00000035107	ProperStrand	1	chr16	58463928	58464028	protein_coding	Dcbld2	intron	ENSMUSG00000035107	ProperStrand	36	1	-inf
chr9	62362735	62362825	protein_coding	Coro2b	intron	ENSMUSG00000041729	NonProperStrand	105	chr9	62362850	62362950	rRNA	n-R5s84	.	ENSMUSG00000084540	ProperStrand	4	4	-inf
chr5	139286786	139286825	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n139286770	NonProperStrand	1	chr5	139285799	139285848	protein_coding	Fam20c	utr3	ENSMUSG00000025854	NonProperStrand	41	1	-inf
chr17	39843494	39843558	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	122028882	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	1	-3.3329
chrX	74017151	74017168	LINE	L1VL1	L1	chrXL1VL174016297	NonProperStrand	4	chr17	39846462	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr2	104986765	104986828	protein_coding	Wt1	intron	ENSMUSG00000016458	ProperStrand	2	chr17	30460511	30460587	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-14.6890
chr7	110390493	110390593	LINE	Lx2B	L1	chr7Lx2B110390312	ProperStrand	1	chr1	9940633	9940724	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	1	-inf
chr10	5830769	5830786	protein_coding	Gm221	intron	ENSMUSG00000019767	NonProperStrand	3	chr10	41219700	41219791	protein_coding	Ppil6	intron	ENSMUSG00000078451	NonProperStrand	20	1	-23.6265
chr1	122733083	122733183	LINE	L1_Mur2	L1	chr1L1_Mur2122732760	ProperStrand	1	chr1	122733365	122733455	SINE	B4A	B4	chr1B4A122733348	ProperStrand	1	1	-inf
chr17	39847640	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	131889507	131889610	LTR	MLT1A1	MaLR	chr5MLT1A1131889516	NonProperStrand	1	1	-inf
chr18	57547028	57547117	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	19	chr15	77261319	77261419	protein_coding	Apol7b	intron	ENSMUSG00000068252	ProperStrand	50	4	-inf
chr17	39846284	39846315	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	85936656	85936697	SINE	B1_Mus2	Alu	chr6B1_Mus285936606	ProperStrand	1	1	-inf
chr3	138776547	138776626	LTR	ORR1A2	MaLR	chr3ORR1A2138776489	ProperStrand	1	chr5	146261160	146261228	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr6	134541806	134541906	LTR	ORR1B1	MaLR	chr6ORR1B1134541555	ProperStrand	4	chr6	134541920	134542010	SINE	B3A	B2	chr6B3A134541922	NonProperStrand	3	2	-inf
chr13	119403947	119404010	LINE	L1MCb	L1	chr13L1MCb119403770	NonProperStrand	1	chr3	97764309	97764339	lincRNA	Gm5544	intron	ENSMUSG00000074388	NonProperStrand	7	1	-inf
chrX	35835832	35835922	LINE	L1_Mus4	L1	chrXL1_Mus435835829	NonProperStrand	1	chrX	35835405	35835505	lincRNA	Gm7598	exon	ENSMUSG00000087390	NonProperStrand	1	1	-inf
chr10	128559296	128559327	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n128559158	NonProperStrand	3	chr14	52158498	52158519	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-17.0662
chr16	87487624	87487691	protein_coding	Cct8	intron	ENSMUSG00000025613	ProperStrand	46	chr9	70241795	70241884	protein_coding	Myo1e	intron	ENSMUSG00000032220	ProperStrand	78	2	-18.6946
chr4	155341574	155341649	LTR	MTD-int	MaLR	chr4MTD-int155341072	ProperStrand	3	chr4	155336717	155336757	protein_coding	Fam132a	exon	ENSMUSG00000023571	NonProperStrand	3	1	-20.2168
chr2	61772317	61772417	LINE	L1MC	L1	chr2L1MC61772246	NonProperStrand	1	chr2	61769149	61769239	LINE	Lx2A	L1	chr2Lx2A61767480	ProperStrand	2	1	-inf
chr7	128707138	128709154	LINE	L1Md_F2	L1	chr7L1Md_F2128708371	NonProperStrand	2	chr7	128709170	128709836	LINE	L1Md_F2	L1	chr7L1Md_F2128709154	NonProperStrand	3	2	-inf
chr7	6823349	6823449	SINE	B1_Mus1	Alu	chr7B1_Mus16823286	NonProperStrand	1	chr7	6823110	6823200	SINE	ID_B1	B4	chr7ID_B16823073	ProperStrand	1	1	-inf
chr14	15639080	15639180	Low_complexity	G-rich	Low_complexity	chr14G-rich15639010	NonProperStrand	1	chr14	15639311	15639401	Simple_repeat	(CAGGG)n	Simple_repeat	chr14(CAGGG)n15639179	NonProperStrand	1	1	-inf
chr17	39847249	39847359	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	76393439	76393460	protein_coding	Gtf2f2	intron	ENSMUSG00000067995	NonProperStrand	2	1	-6.5615
chr4	145044290	145044356	LTR	MYSERV6-int	ERVK	chr4MYSERV6-int145044210	ProperStrand	7	chr6	115676359	115676435	SINE	B1_Mus2	Alu	chr6B1_Mus2115676303	ProperStrand	5	1	-22.8469
chr17	39846660	39846759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	60805105	60805195	lincRNA	Gm13582	intron	ENSMUSG00000075325	ProperStrand	1	1	-inf
chr1	33876488	33876588	LINE	Lx8	L1	chr1Lx833875823	ProperStrand	1	chr1	33876629	33876719	SINE	B1_Mm	Alu	chr1B1_Mm33876565	NonProperStrand	1	1	-inf
chr17	39846462	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	140330845	140330866	LTR	MTD	MaLR	chr5MTD140330743	NonProperStrand	1	1	-inf
chr13	97150337	97150374	Simple_repeat	(GAA)n	Simple_repeat	chr13(GAA)n97150334	ProperStrand	5	chr18	34620984	34621011	protein_coding	Fam13b	intron	ENSMUSG00000036501	ProperStrand	59	1	-17.2748
chr11	6313949	6313979	SINE	B2_Mm1t	B2	chr11B2_Mm1t6313833	NonProperStrand	2	chr11	6339109	6339237	protein_coding	H2afv	intron	ENSMUSG00000041126	NonProperStrand	22	2	-inf
chr17	39847841	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	19733105	19733176	protein_coding	Qpctl	intron	ENSMUSG00000030407	ProperStrand	8	2	-4.3369
chr17	39845260	39845361	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr8	41865398	41865420	LINE	L1Md_T	L1	chr8L1Md_T41861260	NonProperStrand	1	1	-inf
chr13	22042525	22042567	protein_coding	Zfp184	intron	ENSMUSG00000006720	NonProperStrand	16	chrX	52563371	52563428	pseudogene	Gm14625	.	ENSMUSG00000083051	NonProperStrand	37	1	-15.7140
chr8	22545840	22545940	LINE	L1_Mur1	L1	chr8L1_Mur122545837	NonProperStrand	2	chr8	22548262	22548352	LTR	RMER3D-int	ERVK	chr8RMER3D-int22547769	ProperStrand	2	2	-inf
chr17	29032670	29032705	LTR	RMER10A	ERVL	chr17RMER10A29032520	ProperStrand	4	chr4	108719126	108719171	protein_coding	Nrd1	intron	ENSMUSG00000053510	NonProperStrand	9	1	-inf
chr17	47616519	47616559	SINE	B1_Mus2	Alu	chr17B1_Mus247616521	NonProperStrand	1	chr17	47616080	47616166	SINE	B3	B2	chr17B347616066	ProperStrand	1	1	-inf
chr17	39847847	39847895	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	78868534	78868582	SINE	B3A	B2	chr2B3A78868452	ProperStrand	1	1	-inf
chr15	89116071	89116171	protein_coding	Ppp6r2	intron	ENSMUSG00000036561	NonProperStrand	43	chr13	32811900	32811990	protein_coding	Mylk4	intron	ENSMUSG00000044951	NonProperStrand	20	1	-14.9313
chr4	149120029	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr8	119539297	119539323	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	121	1	-5.1961
chr19	10619322	10621625	protein_coding	Cpsf7	utr3	ENSMUSG00000034820	ProperStrand	82	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.3594
chr3	88110797	88110825	protein_coding	Cct3	intron	ENSMUSG00000001416	ProperStrand	26	chr1	153456000	153456112	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	1	-12.5162
chr8	25700513	25700581	protein_coding	Ido1	intron	ENSMUSG00000031551	NonProperStrand	4	chr9	121278479	121278518	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	242	1	-14.9152
chr7	49801401	49801501	LTR	ORR1C1	MaLR	chr7ORR1C149801401	NonProperStrand	2	chr7	49801187	49801277	SINE	B3	B2	chr7B349801153	NonProperStrand	3	2	-inf
chr17	35834983	35835046	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr5	25300425	25300483	protein_coding	Actr3b	intron	ENSMUSG00000056367	NonProperStrand	66	1	-9.1207
chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	63888703	63888803	protein_coding	Cox10	intron	ENSMUSG00000042148	ProperStrand	8	2	-8.1879
chr17	39847183	39847251	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	127440503	127440569	SINE	B1_Mur3	Alu	chr2B1_Mur3127440459	ProperStrand	1	1	-inf
chr17	39847458	39847492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	86987777	86987829	SINE	ID_B1	B4	chr6ID_B186987640	NonProperStrand	1	1	-inf
chr6	124715482	124715506	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	chr11	93894025	93894133	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	1	-9.7154
chr8	82800791	82800813	DNA	BLACKJACK	AcHobo	chr8BLACKJACK82800742	NonProperStrand	2	chr8	91623996	91624058	LINE	L1_Mus1	L1	chr8L1_Mus191623255	NonProperStrand	22	2	-inf
chr9	7420016	7420106	LINE	L1_Mus1	L1	chr9L1_Mus17418253	ProperStrand	1	chr9	7420322	7420422	LINE	L1_Mus1	L1	chr9L1_Mus17420079	ProperStrand	1	1	-inf
chr10	95541768	95542291	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n95542238	ProperStrand	2	chr4	129514748	129514839	protein_coding	Ptp4a2	intron	ENSMUSG00000028788	ProperStrand	78	1	-18.6632
chr13	69613003	69615454	LINE	Lx2	L1	chr13Lx269615356	NonProperStrand	2	chr9	118674951	118675006	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr19	59645653	59645670	LINE	L1_Mus4	L1	chr19L1_Mus459645548	ProperStrand	1	chr15	6749346	6749426	protein_coding	Rictor	utr3	ENSMUSG00000050310	ProperStrand	30	1	-inf
chr17	39843374	39843474	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr13	31668883	31668973	lincRNA	1700018A04Rik	intron	ENSMUSG00000038408	ProperStrand	22	1	-4.4135
chr15	68598369	68598387	LINE	L1Md_F2	L1	chr15L1Md_F268597049	NonProperStrand	2	chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr19	11803558	11818733	Other	RMER1A	Other	chr19RMER1A11817828	NonProperStrand	1	chr17	70963692	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr2	80567050	80567081	LINE	Lx8	L1	chr2Lx880566512	ProperStrand	1	chr16	39790940	39791029	SINE	ID2	ID	chr16ID239790960	ProperStrand	1	1	-inf
chr11	78180991	78181200	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr2	101945581	101945658	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-9.7583
chr5	146260995	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	17776747	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	2	-5.5846
chr1	49633858	49633948	LINE	Lx9	L1	chr1Lx949633714	ProperStrand	1	chr14	33967391	33967491	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-inf
chr6	52538071	52538126	protein_coding	Hibadh	intron	ENSMUSG00000029776	ProperStrand	66	chr19	25391392	25391437	protein_coding	Kank1	intron	ENSMUSG00000032702	ProperStrand	85	1	-11.1301
chr13	24239614	24239649	protein_coding	Lrrc16a	intron	ENSMUSG00000021338	ProperStrand	112	chr19	6086854	6086960	protein_coding	Cdca5	intron	ENSMUSG00000024791	ProperStrand	15	1	-13.5892
chr16	96154964	96154999	LTR	MTB	MaLR	chr16MTB96154836	ProperStrand	5	chr16	96159669	96159794	LTR	RMER6C	ERVK	chr16RMER6C96159353	NonProperStrand	1	1	-inf
chr13	54190149	54190184	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	chrX	134593655	134595215	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-11.5972
chr17	39847327	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	38347072	38347169	protein_coding	Cox17	utr5	ENSMUSG00000046516	ProperStrand	6	1	-3.9545
chr7	12922331	12922996	LINE	L1Md_T	L1	chr7L1Md_T12921579	ProperStrand	21	chr3	152312010	152312063	protein_coding	Ak5	intron	ENSMUSG00000039058	ProperStrand	61	1	-14.1176
chr4	40976762	40976836	SINE	B2_Mm2	B2	chr4B2_Mm240976755	ProperStrand	7	chr9	123461957	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr11	68902400	68903298	protein_coding-noncoding	Vamp2	utr5	ENSMUSG00000020894	ProperStrand	20	chr11	68903247	68904458	protein_coding	Vamp2	exon	ENSMUSG00000020894	ProperStrand	37	11	-inf
chr7	49784732	49784813	LINE	L1Md_F2	L1	chr7L1Md_F249782375	NonProperStrand	29	chr5	146261284	146261339	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-9.3402
chr3	142356160	142356260	Other	RMER1C	Other	chr3RMER1C142356180	ProperStrand	1	chr3	121471526	121471616	protein_coding	Abcd3	exon	ENSMUSG00000028127	NonProperStrand	2	1	-inf
chr19	5797946	5797982	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chrX	6106965	6107011	protein_coding	Shroom4	intron	ENSMUSG00000068270	ProperStrand	12	1	-7.6418
chr17	39846749	39846789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	77060239	77060338	SINE	B1_Mur1	Alu	chr18B1_Mur177060243	ProperStrand	1	1	-inf
chr8	98200257	98200274	LTR	RLTR28	ERVL	chr8RLTR2898200155	ProperStrand	1	chr2	5379232	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr15	58979373	58979444	DNA	MER2	MER2_type	chr15MER258979242	NonProperStrand	4	chr2	25285031	25285057	protein_coding	Abca2	intron	ENSMUSG00000026944	ProperStrand	5	1	-inf
chr7	47186408	47186529	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	chr7	103550698	103550859	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	3	-inf
chr17	39846956	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	41712309	41712360	protein_coding	Il11ra1	exon	ENSMUSG00000073889	NonProperStrand	5	1	-3.1907
chr17	39848462	39848502	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	120629153	120629271	LTR	MTB_Mm	MaLR	chr11MTB_Mm120628883	ProperStrand	1	1	-inf
chr19	49685741	49685767	LINE	L1Md_F2	L1	chr19L1Md_F249685627	NonProperStrand	3	chr5	17776758	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-16.4573
chr6	105492393	105492483	SINE	B1_Mm	Alu	chr6B1_Mm105492415	NonProperStrand	2	chr6	65391178	65391278	protein_coding	C130060K24Rik	exon	ENSMUSG00000029917	NonProperStrand	6	1	-inf
chr14	27483408	27483508	protein_coding	Arf4	intron	ENSMUSG00000021877	NonProperStrand	3	chr11	61888120	61888210	protein_coding	Specc1	intron	ENSMUSG00000042331	NonProperStrand	50	1	-18.9930
chr16	35466334	35466397	protein_coding	Pdia5	intron	ENSMUSG00000022844	ProperStrand	150	chr8	123430484	123430572	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-4.4346
chr17	39847696	39847796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	49069002	49069092	protein_coding	Wwc2	intron	ENSMUSG00000031563	ProperStrand	4	1	-3.7035
chr2	89287388	89287488	LINE	L1Md_T	L1	chr2L1Md_T89287061	NonProperStrand	1	chr2	89287703	89287793	LINE	L1_Mur2	L1	chr2L1_Mur289287609	NonProperStrand	1	1	-inf
chr8	67832138	67832238	LINE	Lx5	L1	chr8Lx567832071	ProperStrand	1	chr8	67831927	67832017	LTR	RLTR31A_Mm	ERVK	chr8RLTR31A_Mm67831606	ProperStrand	1	1	-inf
chr17	39845956	39846030	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr19	12011591	12011621	protein_coding	Patl1	intron	ENSMUSG00000046139	NonProperStrand	6	1	-6.3814
chr14	65984940	65985040	protein_coding	Zfp395	intron	ENSMUSG00000034522	NonProperStrand	6	chr14	65985108	65985198	protein_coding	Zfp395	intron	ENSMUSG00000034522	ProperStrand	10	1	-21.3688
chr16	15123419	15123509	LINE	Lx7	L1	chr16Lx715122839	ProperStrand	1	chr16	15123681	15123781	LINE	Lx7	L1	chr16Lx715123692	ProperStrand	1	1	-inf
chr9	104205238	104205328	protein_coding	Acpp	intron	ENSMUSG00000032561	ProperStrand	41	chr8	23174156	23174256	protein_coding	Alg11	intron	ENSMUSG00000063362	NonProperStrand	23	3	-inf
chr4	54853296	54853386	LINE	L1MB3	L1	chr4L1MB354853084	ProperStrand	1	chr4	54853783	54853883	LINE	L1MB3	L1	chr4L1MB354853799	ProperStrand	1	1	-inf
chr17	39846750	39846850	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	21315977	21316067	protein_coding	Zmynd17	utr5	ENSMUSG00000021815	NonProperStrand	5	1	-3.1907
chr2	109206524	109206614	LINE	L1M5	L1	chr2L1M5109206443	ProperStrand	1	chr2	109206274	109206374	LTR	ORR1A4	MaLR	chr2ORR1A4109206087	ProperStrand	3	1	-inf
chr9	103100035	103100135	protein_coding-noncoding	Srprb	utr3	ENSMUSG00000032553	NonProperStrand	1	chr9	103099629	103099719	protein_coding	Srprb	intron	ENSMUSG00000032553	NonProperStrand	1	1	-inf
chr2	180221089	180221179	LTR	RMER15	ERVL	chr2RMER15180221105	ProperStrand	1	chr2	180220911	180221011	SINE	B2_Mm2	B2	chr2B2_Mm2180220920	ProperStrand	3	1	-inf
chr7	24393883	24393929	LINE	Lx4B	L1	chr7Lx4B24393566	ProperStrand	1	chr9	123461931	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	103342484	103342562	lincRNA	5830418P13Rik	intron	ENSMUSG00000086236	ProperStrand	54	chr9	59675639	59675711	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-6.4969
chr8	24384938	24385028	LINE	L1_Rod	L1	chr8L1_Rod24384705	NonProperStrand	1	chr8	24385111	24385211	LTR	MURVY-LTR	ERV1	chr8MURVY-LTR24385044	ProperStrand	1	1	-inf
chr12	11648960	11649060	LINE	L1Md_A	L1	chr12L1Md_A11648574	ProperStrand	1	chr12	11648470	11648560	LINE	L1Md_F2	L1	chr12L1Md_F211646063	NonProperStrand	1	1	-inf
chr18	74009467	74009563	LTR	ORR1A2	MaLR	chr18ORR1A274009375	NonProperStrand	1	chr18	74002210	74002273	SINE	MIRb	MIR	chr18MIRb74002168	ProperStrand	1	1	-inf
chr9	56788781	56788871	LTR	RLTR14	ERV1	chr9RLTR1456788712	NonProperStrand	1	chr9	56789176	56789276	SINE	B3	B2	chr9B356789050	ProperStrand	1	1	-inf
chr17	39847256	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	61945986	61946019	Low_complexity	AT_rich	Low_complexity	chr9AT_rich61945960	NonProperStrand	1	1	-inf
chr17	66119070	66119087	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	chr11	48857020	48857056	protein_coding	9930111J21Rik2	intron	ENSMUSG00000069892	ProperStrand	9	1	-15.5848
chr1	72824906	72849141	LTR	MLT1B	MaLR	chr1MLT1B72824512	ProperStrand	1	chr13	97190591	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	NonProperStrand	13	1	-inf
chr17	39846415	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	27901370	27901456	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	ProperStrand	7	2	-4.6854
chr12	40778120	40778220	LTR	MLT1D	MaLR	chr12MLT1D40778133	ProperStrand	1	chr15	27421126	27421216	protein_coding	Ank	intron	ENSMUSG00000022265	ProperStrand	72	1	-inf
chr6	84806703	84806736	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	chr14	79041989	79042104	protein_coding	Dgkh	intron	ENSMUSG00000034731	NonProperStrand	61	1	-9.7745
chr2	155899828	155904685	protein_coding-noncoding	Cpne1	utr3	ENSMUSG00000074643	ProperStrand	2	chr2	155899925	155904814	protein_coding	Cpne1	intron	ENSMUSG00000074643	ProperStrand	12	2	-inf
chr10	18850126	18850226	LTR	MYSERV16_I-int	ERVK	chr10MYSERV16_I-int18850066	NonProperStrand	1	chr10	18849924	18850014	SINE	B1_Mus1	Alu	chr10B1_Mus118849852	ProperStrand	1	1	-inf
chr17	39847056	39847125	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	33666800	33666895	LTR	RLTR45	ERVK	chr8RLTR4533666544	ProperStrand	1	1	-inf
chrX	151047930	151066219	LINE	L1Md_F2	L1	chrXL1Md_F2151046414	NonProperStrand	16	chrX	151066219	151066319	LINE	L1_Mur3	L1	chrXL1_Mur3151065805	ProperStrand	5	5	-inf
chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	chr3	52818150	52818167	protein_coding	Cog6	intron	ENSMUSG00000027742	ProperStrand	4	1	-20.8085
chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	chr9	56223819	56223908	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-9.1675
chr3	72495327	72495427	LINE	Lx	L1	chr3Lx72494506	NonProperStrand	1	chr3	72495508	72495598	LTR	RLTR27	ERVK	chr3RLTR2772495469	ProperStrand	1	1	-inf
chr16	11143901	11143967	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	chr11	60174130	60174209	protein_coding	Lrrc48	intron	ENSMUSG00000056598	ProperStrand	98	1	-8.0881
chr11	32525336	32525426	DNA	Charlie4a	MER1_type	chr11Charlie4a32525151	ProperStrand	1	chr11	32525495	32525595	SINE	B1_Mus1	Alu	chr11B1_Mus132525455	ProperStrand	1	1	-inf
chr2	113834814	113834914	DNA	MER3	MER1_type	chr2MER3113834757	ProperStrand	1	chr2	113837449	113837539	protein_coding	Gjd2	exon	ENSMUSG00000068615	ProperStrand	1	1	-inf
chr5	110802530	110802603	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	ProperStrand	131	chr17	33840654	33840737	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-11.6622
chr5	140084867	140084967	LTR	ORR1B1	MaLR	chr5ORR1B1140084649	NonProperStrand	4	chr5	140084973	140085063	SINE	B4	B4	chr5B4140084992	ProperStrand	4	4	-inf
chr9	100955802	100955861	SINE	B1_Mur1	Alu	chr9B1_Mur1100955709	NonProperStrand	1	chr9	100928752	100928797	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	1	-inf
chr19	29099065	29099165	protein_coding	Cdc37l1	intron	ENSMUSG00000024780	ProperStrand	8	chr19	29106164	29106254	protein_coding	Ak3	intron	ENSMUSG00000024782	ProperStrand	1	1	-inf
chr7	127802876	127802966	protein_coding	Uqcrc2	utr3	ENSMUSG00000030884	ProperStrand	67	chr7	127803002	127803102	protein_coding	Pdzd9	utr3	ENSMUSG00000030887	NonProperStrand	2	1	-19.1908
chr8	69946437	69946493	LTR	RLTR13C1	ERVK	chr8RLTR13C169945885	ProperStrand	1	chr8	110105786	110105832	protein_coding	Psmd7	intron	ENSMUSG00000039067	NonProperStrand	2	1	-inf
chr12	108906741	108906831	SINE	B3	B2	chr12B3108906766	ProperStrand	5	chr12	108906916	108907021	Simple_repeat	(GGAA)n	Simple_repeat	chr12(GGAA)n108906945	ProperStrand	2	2	-inf
chr17	6770983	6771024	Low_complexity	G-rich	Low_complexity	chr17G-rich6770936	NonProperStrand	1	chr9	123461884	123461958	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	123504889	123504951	protein_coding	Slc6a20b	intron	ENSMUSG00000025243	NonProperStrand	3	chr2	5379265	5379340	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.8312
chr7	34207860	34208277	LINE	L1Md_F2	L1	chr7L1Md_F234207113	ProperStrand	22	chr14	64935609	64935685	protein_coding	Msra	intron	ENSMUSG00000054733	ProperStrand	122	1	-12.6311
chr17	88734850	88734950	DNA	RCHARR1	MER1_type	chr17RCHARR188734877	ProperStrand	1	chr17	88734504	88734594	SINE	B3A	B2	chr17B3A88734462	NonProperStrand	1	1	-inf
chr7	5089987	5090022	LINE	L1_Mus2	L1	chr7L1_Mus25084963	NonProperStrand	16	chr7	5083896	5083935	LINE	Lx2B	L1	chr7Lx2B5082312	NonProperStrand	9	1	-18.8138
chr8	80852472	80852583	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr10	63319689	63319733	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-6.1971
chr17	39846461	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	24565664	24566266	LTR	ORR1A0	MaLR	chr7ORR1A024566178	NonProperStrand	2	1	-5.3533
chr4	139986121	139986139	lincRNA	Gm13021	intron	ENSMUSG00000086437	NonProperStrand	1	chr13	3882760	3882824	protein_coding	Net1	utr3	ENSMUSG00000021215	ProperStrand	33	1	-inf
chr4	75030627	75030717	LINE	Lx3A	L1	chr4Lx3A75030549	ProperStrand	1	chr4	75030271	75030371	LTR	IAPEY3_LTR	ERVK	chr4IAPEY3_LTR75030078	ProperStrand	1	1	-inf
chr9	59312635	59312657	protein_coding	Arih1	intron	ENSMUSG00000025234	NonProperStrand	60	chr7	29400885	29400966	protein_coding	C330005M16Rik	intron	ENSMUSG00000037469	ProperStrand	34	1	-13.1719
chr19	21823905	21826098	LTR	MTE2b	MaLR	chr19MTE2b21826018	ProperStrand	1	chr19	21857866	21857894	protein_coding	Tmem2	intron	ENSMUSG00000024754	ProperStrand	11	1	-inf
chr5	57661385	57661485	LINE	L1Md_F2	L1	chr5L1Md_F257661311	ProperStrand	1	chr5	57661030	57661120	LTR	RLTR45	ERVK	chr5RLTR4557661049	ProperStrand	1	1	-inf
chr4	148880531	148880660	SINE	ID_B1	B4	chr4ID_B1148880449	ProperStrand	1	chr4	148880670	148880695	SINE	RSINE1	B4	chr4RSINE1148880658	NonProperStrand	1	1	-inf
chr19	47644059	47644076	DNA	MER20	MER1_type	chr19MER2047644011	NonProperStrand	1	chr17	39846759	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	25328658	25328761	protein_coding	2310033E01Rik	intron	ENSMUSG00000011632	ProperStrand	2	chr17	6983106	6983133	protein_coding	Ezr	intron	ENSMUSG00000052397	ProperStrand	3	2	-inf
chr9	23469135	23469155	LINE	Lx8	L1	chr9Lx823469098	NonProperStrand	1	chr15	76327526	76327626	protein_coding	Hsf1	intron	ENSMUSG00000022556	ProperStrand	4	1	-inf
chr15	102178792	102178830	protein_coding	Aaas	intron	ENSMUSG00000036678	ProperStrand	23	chr9	57595909	57596008	protein_coding	Edc3	intron	ENSMUSG00000038957	ProperStrand	18	1	-16.4026
chr15	32488298	32488398	protein_coding	Sema5a	intron	ENSMUSG00000022231	ProperStrand	17	chr1	85213656	85213746	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	NonProperStrand	16	3	-22.0574
chr2	67207700	67207790	antisense	Gm13599	.	ENSMUSG00000087043	NonProperStrand	7	chr13	89836933	89837033	protein_coding	Vcan	intron	ENSMUSG00000021614	NonProperStrand	3	1	-inf
chr12	70070489	70070553	Other	RMER1B	Other	chr12RMER1B70069921	NonProperStrand	5	chr9	123461847	123461921	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr4	129782450	129782511	protein_coding	Pef1	intron	ENSMUSG00000028779	ProperStrand	5	chr6	95541508	95541580	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-15.3091
chr9	27019420	27029434	SINE	B4	B4	chr9B427019429	ProperStrand	2	chr9	27015281	27019377	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n27019325	NonProperStrand	2	2	-inf
chr19	16347161	16347261	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	chr15	102435027	102435117	protein_coding	Atf7	intron	ENSMUSG00000052414	NonProperStrand	47	4	-21.4210
chr10	50767666	50767756	Simple_repeat	(GA)n	Simple_repeat	chr10(GA)n50767687	ProperStrand	1	chr6	35065474	35065574	protein_coding	Cnot4	intron	ENSMUSG00000038784	ProperStrand	34	1	-inf
chr5	146260997	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	160588991	160589007	protein_coding	Ace2	intron	ENSMUSG00000015405	NonProperStrand	17	1	-7.5728
chr17	39847257	39847295	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	98313417	98314175	protein_coding	Hsd3b4	intron	ENSMUSG00000056351	ProperStrand	8	1	-3.3803
chrX	87238383	87238409	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr9	44391879	44391915	SINE	B4A	B4	chr9B4A44391707	NonProperStrand	3	1	-15.8403
chr2	121764528	121764602	LINE	Lx9	L1	chr2Lx9121764483	NonProperStrand	1	chr17	39846458	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	138326572	140007932	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr12	79364085	79396320	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	2	-6.4736
chr1	150043946	150044046	LINE	L1_Mur1	L1	chr1L1_Mur1150043461	ProperStrand	1	chr1	150044286	150044376	LINE	Lx3A	L1	chr1Lx3A150044173	NonProperStrand	1	1	-inf
chr17	39847636	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	58218672	58218762	SINE	B4A	B4	chr9B4A58218663	ProperStrand	1	1	-inf
chr17	36276454	36276554	Simple_repeat	(GAA)n	Simple_repeat	chr17(GAA)n36276345	ProperStrand	1	chr17	36274774	36274864	pseudogene	Gm9574	.	ENSMUSG00000073980	NonProperStrand	1	1	-inf
chr7	97298120	97298138	protein_coding	Picalm	intron	ENSMUSG00000039361	ProperStrand	9	chr2	118834126	118834262	pseudogene	Gm14088	.	ENSMUSG00000081413	ProperStrand	2	1	-20.8824
chr4	137319905	137320005	protein_coding	Alpl	intron	ENSMUSG00000028766	ProperStrand	39	chr18	21119324	21119349	protein_coding	Rnf125	intron	ENSMUSG00000033107	NonProperStrand	13	1	-16.0341
chr8	4312582	4324940	protein_coding	Elavl1	utr5	ENSMUSG00000040028	ProperStrand	23	chr4	115021534	115021551	pseudogene	Gm12836	.	ENSMUSG00000083190	ProperStrand	7	1	-18.3763
chr2	27995728	27995886	LTR	MTA_Mm	MaLR	chr2MTA_Mm27995817	ProperStrand	2	chr2	27973871	27974460	lincRNA	F730016J06Rik	intron	ENSMUSG00000086425	ProperStrand	14	2	-inf
chr9	65692876	65692976	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	chr10	39683593	39683617	protein_coding	BC021785	intron	ENSMUSG00000038528	ProperStrand	17	1	-13.9090
chr16	32924547	32924647	protein_coding	Lrch3	intron	ENSMUSG00000022801	ProperStrand	84	chr16	32924430	32924520	pseudogene	Gm6611	.	ENSMUSG00000091997	ProperStrand	4	3	-inf
chr2	168192459	168192608	Simple_repeat	(TATG)n	Simple_repeat	chr2(TATG)n168192483	NonProperStrand	8	chr2	168192360	168192464	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n168192345	NonProperStrand	7	7	-inf
chr6	40929550	40939184	LINE	L1Md_F	L1	chr6L1Md_F40928087	ProperStrand	1	chr3	41475314	41475415	protein_coding	Sclt1	exon	ENSMUSG00000059834	ProperStrand	236	1	-inf
chr9	97201694	97201784	LINE	Lx9	L1	chr9Lx997201671	NonProperStrand	1	chr9	97201405	97201505	LTR	MLT2B2	ERVL	chr9MLT2B297201022	ProperStrand	1	1	-inf
chr12	55299082	55299147	protein_coding	Egln3	intron	ENSMUSG00000035105	ProperStrand	24	chr2	162391006	162391061	protein_coding	Ptprt	intron	ENSMUSG00000053141	NonProperStrand	55	1	-14.0548
chr2	179911932	179912035	protein_coding	Lama5	intron	ENSMUSG00000015647	ProperStrand	62	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-6.5061
chr4	106852135	106852654	protein_coding	Tmem59	intron	ENSMUSG00000028618	NonProperStrand	3	chr4	106849911	106851481	protein_coding	2210012G02Rik	intron	ENSMUSG00000028619	ProperStrand	16	2	-inf
chr4	63297677	63297780	lincRNA	Gm11482	intron	ENSMUSG00000086817	ProperStrand	1	chr18	77697713	77697757	protein_coding	Rnf165	utr3	ENSMUSG00000025427	ProperStrand	16	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr17	5161918	5162035	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-3.2541
chr13	21896929	21896998	LINE	Lx8	L1	chr13Lx821896936	ProperStrand	3	chr17	39847659	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39847471	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	145745108	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	1	1	-inf
chr13	21780248	21780343	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr2	109947225	109947267	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	1	-9.8015
chr17	39846376	39846397	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	149629407	149629828	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n149629771	NonProperStrand	1	1	-inf
chr9	19657841	19657941	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr6	122968501	122968591	protein_coding	Clec4a4	intron	ENSMUSG00000059639	ProperStrand	1	1	-inf
chr11	102455098	102455180	LTR	RMER15	ERVL	chr11RMER15102454959	ProperStrand	2	chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr10	62271630	62271730	protein_coding	Tet1	utr3	ENSMUSG00000047146	ProperStrand	49	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-12.4998
chr1	161849878	161849990	protein_coding	Tnr	intron	ENSMUSG00000015829	NonProperStrand	16	chr9	53644613	53646667	protein_coding	Slc35f2	intron	ENSMUSG00000042195	ProperStrand	1	1	-inf
chr6	57258359	57258376	LINE	L1Md_F2	L1	chr6L1Md_F257254310	NonProperStrand	2	chr13	113992623	113992756	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	2	-inf
chr15	89358221	89358285	protein_coding	Shank3	intron	ENSMUSG00000022623	ProperStrand	86	chr2	44923383	44923418	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	25	1	-13.0726
chr12	40559683	40559755	LINE	Lx5	L1	chr12Lx540558893	NonProperStrand	1	chr1	74160958	74160997	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	1	-inf
chr7	117628329	117628429	protein_coding	Sbf2	intron	ENSMUSG00000038371	NonProperStrand	46	chr7	127131233	127131323	protein_coding	Dnahc3	intron	ENSMUSG00000052273	NonProperStrand	37	1	-13.5374
chr12	34590905	34591005	LTR	RMER17C-int	ERVK	chr12RMER17C-int34590571	NonProperStrand	1	chr17	39848097	39848187	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr9	123461957	123461992	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chrX	72257078	72257193	protein_coding	Gab3	intron	ENSMUSG00000032750	ProperStrand	5	1	-5.8308
chr6	4729708	4729808	LINE	L1_Mm	L1	chr6L1_Mm4729602	ProperStrand	1	chr6	4682913	4683003	protein_coding	Sgce	intron	ENSMUSG00000004631	NonProperStrand	2	1	-inf
chr1	75487718	75487744	protein_coding	Obsl1	utr3	ENSMUSG00000026211	NonProperStrand	1	chr9	59670527	59670604	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr11	79075020	79075042	LTR	ORR1E	MaLR	chr11ORR1E79075020	NonProperStrand	1	chr17	39846722	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	3201503	3201547	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	128357741	128357833	protein_coding-noncoding	Nrip2	utr5	ENSMUSG00000001520	NonProperStrand	3	1	-9.0398
chr17	32703082	32703098	LINE	L1Md_F2	L1	chr17L1Md_F232702362	ProperStrand	1	chr2	127805386	127806253	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	1	-inf
chr4	123506366	123506480	protein_coding	Rhbdl2	intron	ENSMUSG00000043333	NonProperStrand	52	chr2	130029916	130029944	protein_coding	Tmc2	intron	ENSMUSG00000060332	ProperStrand	5	1	-17.5041
chr11	60538020	60538349	protein_coding-noncoding	Flii	utr3	ENSMUSG00000002812	NonProperStrand	11	chr11	60537808	60538448	protein_coding	Flii	intron	ENSMUSG00000002812	NonProperStrand	22	10	-inf
chr7	65435276	65435368	LINE	L1_Rod	L1	chr7L1_Rod65434758	ProperStrand	1	chr7	65435606	65435706	LINE	L1_Rod	L1	chr7L1_Rod65435452	ProperStrand	1	1	-inf
chr4	45108068	45108109	LINE	Lx6	L1	chr4Lx645106017	ProperStrand	2	chr14	52160999	52161071	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-18.0731
chr15	64129269	64129299	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr8	123032543	123032616	protein_coding	Gse1	intron	ENSMUSG00000031822	NonProperStrand	68	1	-8.3956
chr17	39847250	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	46992450	46992502	LTR	RLTR26	ERVK	chr7RLTR2646991946	NonProperStrand	1	1	-inf
chr11	88680215	88680307	SINE	B1_Mur2	Alu	chr11B1_Mur288680239	NonProperStrand	5	chr11	88680062	88680221	SINE	B2_Mm1t	B2	chr11B2_Mm1t88680022	ProperStrand	6	5	-inf
chr4	117034500	117034583	protein_coding	Rnf220	intron	ENSMUSG00000028677	NonProperStrand	93	chr13	44869615	44869662	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.6673
chr11	50276844	50276923	LTR	ORR1A2-int	MaLR	chr11ORR1A2-int50276300	ProperStrand	1	chrX	152065239	152065309	protein_coding	Gm15155	intron	ENSMUSG00000055109	ProperStrand	121	1	-inf
chr17	70963685	70963785	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	59431947	59431979	protein_coding	Susd1	intron	ENSMUSG00000038578	ProperStrand	13	1	-9.2955
chr10	111210801	111210880	LINE	L1Md_F2	L1	chr10L1Md_F2111209457	NonProperStrand	1	chr17	39847207	39847252	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr14	120947489	120947573	LINE	L1_Mus2	L1	chr14L1_Mus2120945935	NonProperStrand	12	chr9	64175425	64175499	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-12.2246
chr1	17091671	17091708	SINE	ID4	ID	chr1ID417091627	NonProperStrand	1	chr9	123461822	123461877	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	28438122	28438170	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr4	151122332	151122428	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	1	-12.4886
chr11	88637644	88637726	DNA	RCHARR1	MER1_type	chr11RCHARR188637394	NonProperStrand	3	chr11	88625954	88626031	SINE	B1_Mur4	Alu	chr11B1_Mur488625930	ProperStrand	2	1	-20.2824
chr9	45774002	45774460	protein_coding	Pafah1b2	utr3	ENSMUSG00000003131	ProperStrand	11	chr9	123461931	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr5	71581397	71581417	LINE	L1Md_T	L1	chr5L1Md_T71575064	ProperStrand	1	chr2	32613138	32613204	protein_coding-noncoding	Tor2a	utr5	ENSMUSG00000009563	ProperStrand	1	1	-inf
chr6	13871139	13871457	lincRNA	1110019D14Rik	intron	ENSMUSG00000084931	NonProperStrand	8	chr11	61153212	61153291	protein_coding	Slc47a2	intron	ENSMUSG00000069855	ProperStrand	19	1	-18.4261
chr3	134482018	134482118	LINE	L1Md_T	L1	chr3L1Md_T134478307	NonProperStrand	1	chr3	134288657	134288747	lincRNA	Gm16742	intron	ENSMUSG00000084777	ProperStrand	11	1	-inf
chr17	39847836	39847908	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	29615079	29615141	protein_coding-noncoding	Opa1	utr5	ENSMUSG00000038084	ProperStrand	1	1	-inf
chr3	67446266	67446366	SINE	B1F2	Alu	chr3B1F267446265	NonProperStrand	1	chr3	67446182	67446272	SINE	B4A	B4	chr3B4A67446038	NonProperStrand	1	1	-inf
chr17	39847341	39848072	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	112974699	112974718	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	64	-16.1393
chr14	49872331	49872431	LINE	Lx9	L1	chr14Lx949872315	NonProperStrand	1	chr14	49872012	49872102	LTR	RLTR9A	ERVK	chr14RLTR9A49871923	ProperStrand	1	1	-inf
chr6	72753129	72753219	SINE	B3	B2	chr6B372753124	ProperStrand	7	chr6	72753003	72753103	SINE	ID_B1	B4	chr6ID_B172752906	ProperStrand	7	7	-inf
chr7	4743556	4743656	SINE	B1_Mus2	Alu	chr7B1_Mus24743542	ProperStrand	1	chr7	4743455	4743545	SINE	B3A	B2	chr7B3A4743355	ProperStrand	1	1	-inf
chr2	23526990	23527090	LTR	ORR1A2-int	MaLR	chr2ORR1A2-int23526996	NonProperStrand	1	chr2	23527123	23527213	LTR	RMER2	ERV1	chr2RMER223527090	ProperStrand	2	1	-inf
chr16	32002434	32002549	protein_coding	Senp5	intron	ENSMUSG00000022772	ProperStrand	10	chr8	72482051	72482080	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	1	-13.7606
chr10	47381090	47381180	LINE	L1_Mur2	L1	chr10L1_Mur247380189	NonProperStrand	1	chr10	47381244	47381344	LINE	Lx2	L1	chr10Lx247381173	ProperStrand	1	1	-inf
chr12	119325153	119325192	protein_coding	Dnahc11	intron	ENSMUSG00000018581	ProperStrand	13	chr8	12943697	12943790	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-11.7400
chr6	3201480	3201568	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	20405047	20405080	SINE	B1_Mur4	Alu	chr9B1_Mur420405041	NonProperStrand	1	1	-inf
chr5	70804101	70804120	LINE	Lx2	L1	chr5Lx270803843	ProperStrand	1	chr2	168601398	168601415	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	1	-inf
chr11	12381736	12381830	LTR	ERVL-int	ERVL	chr11ERVL-int12381383	ProperStrand	2	chr13	44869575	44869629	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr12	33152996	33153049	LINE	L1MA10	L1	chr12L1MA1033152908	ProperStrand	1	chr15	79534661	79534743	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	NonProperStrand	156	1	-inf
chr3	13634430	13634530	LINE	Lx8	L1	chr3Lx813634178	ProperStrand	1	chr3	13635286	13635376	LINE	Lx8	L1	chr3Lx813635219	ProperStrand	1	1	-inf
chr13	112578195	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr11	67568192	67568279	protein_coding	Glp2r	intron	ENSMUSG00000049928	NonProperStrand	14	1	-7.0807
chr17	39846005	39846104	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr5	30652728	30652769	protein_coding	Ccdc164	exon	ENSMUSG00000073102	ProperStrand	13	1	-4.7829
chr12	84185988	84186052	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	chr13	53249141	53249175	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	1	-7.4510
chr15	98931493	98931516	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	chr7	133084801	133084888	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-5.8340
chr2	53130477	53130567	LINE	Lx	L1	chr2Lx53130305	ProperStrand	1	chr17	39847663	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	4136310	4136351	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr4	115811452	115811483	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	1	-13.4658
chr5	115490319	115490398	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr6	93785519	93785588	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	2	-6.0067
chr15	44788540	44788556	LINE	L1Md_F	L1	chr15L1Md_F44786249	ProperStrand	1	chr10	83414098	83414198	LTR	ORR1E	MaLR	chr10ORR1E83413869	NonProperStrand	7	1	-inf
chr17	39847611	39847636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	106115789	106115824	protein_coding	Twf2	intron	ENSMUSG00000023277	NonProperStrand	2	1	-5.4040
chr1	22977577	22977667	LINE	Lx2B	L1	chr1Lx2B22977405	ProperStrand	1	chr1	22977302	22977402	LTR	MTD	MaLR	chr1MTD22977220	NonProperStrand	1	1	-inf
chr11	69936587	69936614	LINE	L1_Mm	L1	chr11L1_Mm69936394	ProperStrand	3	chr9	123461931	123461983	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr17	39846591	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	36094030	36094051	protein_coding	Ptgs1	intron	ENSMUSG00000047250	ProperStrand	13	4	-6.6926
chr9	114561097	114561197	SINE	B3A	B2	chr9B3A114561086	ProperStrand	22	chr9	114561236	114561326	SINE	B4A	B4	chr9B4A114561233	ProperStrand	3	3	-inf
chr2	162949527	162959523	lincRNA	Gm11454	intron	ENSMUSG00000086152	NonProperStrand	2	chr11	107208210	107208283	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-16.1956
chr11	16754829	16754846	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-14.4601
chr17	39847956	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	127195396	127195496	SINE	B3	B2	chr4B3127195344	NonProperStrand	1	1	-inf
chr5	110380657	110380763	DNA	Tigger7	MER2_type	chr5Tigger7110380655	ProperStrand	1	chr5	110380870	110380897	LTR	MTC	MaLR	chr5MTC110380823	ProperStrand	1	1	-inf
chr6	89317820	89317836	LINE	L1MDa	L1	chr6L1MDa89317724	ProperStrand	3	chr17	39847572	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr5	146260994	146261024	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	34454676	34454693	protein_coding	Apc	intron	ENSMUSG00000005871	NonProperStrand	35	1	-6.1204
chr12	101918943	101919025	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	chr7	139522590	139522628	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-7.1467
chr7	35001017	35001068	protein_coding	Gpi1	intron	ENSMUSG00000036427	NonProperStrand	43	chr13	97190562	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.7739
chr10	99002553	99002643	Low_complexity	CT-rich	Low_complexity	chr10CT-rich99002475	NonProperStrand	1	chr10	87926345	87926445	protein_coding	Chpt1	intron	ENSMUSG00000060002	ProperStrand	3	1	-inf
chr5	88670608	88670680	LINE	L1Md_A	L1	chr5L1Md_A88667948	NonProperStrand	3	chr5	72290569	72290639	protein_coding	Gabrb1	intron	ENSMUSG00000029212	ProperStrand	56	1	-18.2742
chr17	71631279	71631365	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	chr11	69669654	69669730	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-7.3695
chr18	25472437	25472509	protein_coding	AW554918	intron	ENSMUSG00000033632	NonProperStrand	14	chr9	15313801	15313860	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-13.4173
chr9	123461933	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	155451620	155451682	protein_coding	Myh7b	exon	ENSMUSG00000074652	NonProperStrand	20	1	-3.0591
chr11	50892829	50892929	LINE	Lx4B	L1	chr11Lx4B50892426	ProperStrand	1	chr11	50889809	50889899	LTR	RMER17B	ERVK	chr11RMER17B50889290	ProperStrand	1	1	-inf
chr7	111070676	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	chr17	66119070	66119087	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-12.1766
chr7	19043547	19045038	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int19043772	NonProperStrand	23	chr7	19042779	19044936	LTR	RLTR46	ERVK	chr7RLTR4619043448	NonProperStrand	18	15	-20.8493
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr3	89995891	89996023	protein_coding	Nup210l	intron	ENSMUSG00000027939	NonProperStrand	45	1	-12.7068
chr2	180257437	180257671	protein_coding	Ntsr1	intron	ENSMUSG00000027568	ProperStrand	19	chr13	97190551	97190586	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.4076
chr10	82955333	82955360	protein_coding	Aldh1l2	exon	ENSMUSG00000020256	ProperStrand	30	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.9563
chr11	60349994	60350094	protein_coding-noncoding	Alkbh5	utr5	ENSMUSG00000042650	NonProperStrand	1	chr11	60350099	60350189	protein_coding	Alkbh5	intron	ENSMUSG00000042650	NonProperStrand	11	1	-inf
chr17	39847664	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	21798089	21798179	SINE	B1_Mus2	Alu	chr19B1_Mus221798060	ProperStrand	1	1	-inf
chr8	31149863	31149891	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr2	32963155	32963220	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-8.4022
chr11	59226470	59226494	protein_coding	Snap47	intron	ENSMUSG00000009894	ProperStrand	12	chr14	52300465	52300577	pseudogene	Gm17186	.	ENSMUSG00000090603	ProperStrand	7	1	-20.6365
chr14	56727817	56727859	LINE	Lx5	L1	chr14Lx556727101	NonProperStrand	2	chr7	116157313	116157345	protein_coding	Tub	intron	ENSMUSG00000031028	NonProperStrand	50	1	-20.0295
chrX	4136307	4136359	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr18	77525539	77525633	protein_coding	Loxhd1	intron	ENSMUSG00000032818	NonProperStrand	260	1	-9.8509
chr3	30678642	30678709	LINE	Lx9	L1	chr3Lx930678624	NonProperStrand	1	chr4	133375231	133375297	LTR	ORR1B1-int	MaLR	chr4ORR1B1-int133375168	NonProperStrand	1	1	-inf
chr17	39843474	39843511	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr6	125144113	125144140	protein_coding	Mrpl51	utr3	ENSMUSG00000030335	ProperStrand	8	1	-6.4530
chr1	161035403	161035467	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr17	39843823	39843909	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-3.3462
chr1	52457782	52457847	LINE	L1Md_T	L1	chr1L1Md_T52456764	NonProperStrand	3	chr5	66141253	66141294	SINE	ID_B1	B4	chr5ID_B166141250	NonProperStrand	1	1	-inf
chr5	82290601	82290691	LINE	L1_Mus3	L1	chr5L1_Mus382290433	NonProperStrand	1	chr5	82290349	82290449	LINE	Lx3_Mus	L1	chr5Lx3_Mus82289304	NonProperStrand	1	1	-inf
chr6	3201509	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	57037817	57037834	protein_coding	2310005G13Rik	utr3	ENSMUSG00000046748	ProperStrand	2	1	-10.1342
chr17	39847026	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	75765494	75765537	Simple_repeat	(A)n	Simple_repeat	chr11(A)n75765491	ProperStrand	1	1	-inf
chr12	78350926	78351023	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	36582586	36582604	protein_coding	Sorcs2	intron	ENSMUSG00000029093	NonProperStrand	21	1	-7.9946
chr11	97988919	97988958	protein_coding	Fbxl20	intron	ENSMUSG00000020883	ProperStrand	47	chr15	89355094	89355203	protein_coding	Shank3	intron	ENSMUSG00000022623	NonProperStrand	7	1	-16.9628
chr9	109063063	109063148	protein_coding	Fbxw21	intron	ENSMUSG00000047237	ProperStrand	6	chr8	126944918	126944981	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-15.5005
chr2	27518740	27518830	SINE	B1_Mus1	Alu	chr2B1_Mus127518740	NonProperStrand	3	chr2	27518892	27518992	SINE	B3A	B2	chr2B3A27518883	NonProperStrand	3	3	-inf
chr7	136115456	136115556	LINE	Lx3C	L1	chr7Lx3C136115457	NonProperStrand	1	chr7	136115126	136115216	SINE	PB1D9	Alu	chr7PB1D9136115124	NonProperStrand	1	1	-inf
chr17	39846580	39846658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	50565237	50565308	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm50565170	NonProperStrand	3	1	-4.3017
chr18	24622821	24622921	Other	RMER1A	Other	chr18RMER1A24622810	NonProperStrand	1	chr18	24623469	24623559	Other	RMER1A	Other	chr18RMER1A24623487	NonProperStrand	1	1	-inf
chr15	38517793	38517923	LTR	RLTR28	ERVL	chr15RLTR2838517758	ProperStrand	1	chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39845582	39845640	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	177771073	177771152	LTR	ORR1A0	MaLR	chr2ORR1A0177771066	ProperStrand	1	1	-inf
chr8	72345182	72345292	protein_coding	Gmip	utr3	ENSMUSG00000036246	NonProperStrand	19	chr17	36231263	36231299	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	1	-15.6942
chr8	79143776	79143839	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	chr19	5800964	5801000	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-3.0637
chr18	64898041	64898131	LINE	Lx8	L1	chr18Lx864897951	NonProperStrand	2	chr18	64898128	64898228	SINE	B1_Mus1	Alu	chr18B1_Mus164898118	ProperStrand	3	2	-inf
chr17	24600379	24602097	LTR	BGLII_A	ERVK	chr17BGLII_A24600374	ProperStrand	11	chr17	24599917	24600017	SINE	B1_Mus1	Alu	chr17B1_Mus124599910	ProperStrand	9	8	-inf
chr12	67266487	67266573	LINE	L1Md_A	L1	chr12L1Md_A67265871	NonProperStrand	1	chr16	57512830	57512906	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	1	-inf
chr5	146261301	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	23623090	23623206	protein_coding	Klhl7	intron	ENSMUSG00000028986	NonProperStrand	38	2	-13.9840
chr7	34220381	34220463	LTR	RMER19B	ERVK	chr7RMER19B34220148	ProperStrand	1	chr9	103540426	103540455	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-inf
chr17	39847026	39847123	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	7993042	7994819	protein_coding	Apob	intron	ENSMUSG00000020609	NonProperStrand	5	1	-3.1907
chr14	19278151	19278209	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr8	13450903	13450924	protein_coding	Fam70b	intron	ENSMUSG00000038457	NonProperStrand	2	1	-19.0294
chr10	82877290	82879206	LTR	MURVY-int	ERV1	chr10MURVY-int82873167	NonProperStrand	7	chr3	89442255	89442277	protein_coding	Kcnn3	intron	ENSMUSG00000000794	ProperStrand	88	1	-15.6804
chr17	31847218	31847235	SINE	B1_Mur3	Alu	chr17B1_Mur331847134	ProperStrand	5	chr15	80078499	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-13.2485
chr8	72341054	72341492	protein_coding-noncoding	Gmip	utr5	ENSMUSG00000036246	NonProperStrand	6	chr8	72341171	72341575	protein_coding	Gmip	intron	ENSMUSG00000036246	NonProperStrand	19	6	-inf
chrX	144338605	144338707	LINE	Lx5	L1	chrXLx5144338624	ProperStrand	2	chrX	144338453	144338543	SINE	B1F	Alu	chrXB1F144338459	ProperStrand	3	1	-20.8297
chr11	109011788	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	122723717	122723739	LTR	MT2B	ERVL	chr5MT2B122723602	NonProperStrand	1	1	-inf
chr12	78426011	78426111	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr12	67667915	67668005	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	2	-8.9380
chr17	39846373	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	82478279	82478298	protein_coding	Gm4787	exon	ENSMUSG00000072974	NonProperStrand	1	1	-inf
chr6	124715275	124715407	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	chr2	167029647	167031335	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	4	-inf
chr9	123461883	123461953	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	86478548	86478633	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	2	-3.5608
chr6	82892041	82892141	LTR	ORR1D2	MaLR	chr6ORR1D282891857	NonProperStrand	1	chr6	82892275	82892365	SINE	B2_Mm1a	B2	chr6B2_Mm1a82892220	NonProperStrand	1	1	-inf
chr16	90033053	90033128	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr4	43145234	43145311	protein_coding	Unc13b	intron	ENSMUSG00000028456	ProperStrand	85	1	-5.6298
chr12	67322647	67322663	LINE	L1_Mus1	L1	chr12L1_Mus167322633	NonProperStrand	1	chr11	22976212	22976230	SINE	B3A	B2	chr11B3A22976057	ProperStrand	1	1	-inf
chr9	64214574	64253224	SINE	B4A	B4	chr9B4A64214558	ProperStrand	1	chr9	64253348	64253385	protein_coding	Megf11	intron	ENSMUSG00000036466	NonProperStrand	40	1	-inf
chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chr12	78350926	78351057	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-5.6795
chr9	123461884	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr13	23698389	23698444	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	ProperStrand	11	1	-4.1956
chr13	116349694	116349784	LINE	Lx5	L1	chr13Lx5116349681	NonProperStrand	1	chr13	116349450	116349550	LTR	MTEa-int	MaLR	chr13MTEa-int116349466	ProperStrand	1	1	-inf
chr16	12721535	12721575	LTR	RLTRETN_Mm	ERVK	chr16RLTRETN_Mm12721378	ProperStrand	1	chr17	39846503	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	129550781	129550848	SINE	B2_Mm2	B2	chr5B2_Mm2129550716	NonProperStrand	1	chr7	30569837	30569977	protein_coding	Zfp30	intron	ENSMUSG00000047473	NonProperStrand	18	1	-inf
chr11	109011791	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	13340701	13340733	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	1	-3.5124
chr17	21740424	21740514	LINE	L1Md_A	L1	chr17L1Md_A21740416	ProperStrand	2	chr11	105140567	105140667	protein_coding	Tlk2	intron	ENSMUSG00000020694	NonProperStrand	5	2	-inf
chr8	4145175	4145265	LINE	Lx7	L1	chr8Lx74144909	ProperStrand	1	chr8	4338075	4338175	protein_coding	Ccl25	intron	ENSMUSG00000023235	ProperStrand	4	1	-inf
chr12	43227163	43227184	LINE	L1Md_F2	L1	chr12L1Md_F243225246	NonProperStrand	1	chr1	36231670	36231701	protein_coding	Uggt1	intron	ENSMUSG00000037470	ProperStrand	31	1	-inf
chr1	75194884	75194932	processed_transcript	Ankzf1	.	ENSMUSG00000026199	ProperStrand	3	chr4	117154095	117154162	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-15.6007
chr19	7293266	7293358	SINE	B2_Mm1t	B2	chr19B2_Mm1t7293259	ProperStrand	1	chr9	123462079	123462142	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	133667447	133667464	protein_coding	Ubxn11	intron	ENSMUSG00000012126	NonProperStrand	37	chr11	88572491	88572620	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	2	-11.6216
chr14	78491766	78491802	LINE	Lx9	L1	chr14Lx978491697	NonProperStrand	1	chr4	137601847	137601961	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-inf
chr15	62609144	62609234	LINE	Lx7	L1	chr15Lx762609027	ProperStrand	1	chr15	62608890	62608990	SINE	B3	B2	chr15B362608826	ProperStrand	1	1	-inf
chr3	103047046	103047145	LTR	MT2A	ERVL	chr3MT2A103046726	NonProperStrand	3	chr13	44869626	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr17	39847440	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	68084165	68084211	protein_coding	Lama1	intron	ENSMUSG00000032796	ProperStrand	3	1	-4.3512
chr6	3201469	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	83961847	83961941	protein_coding	Acaca	intron	ENSMUSG00000020532	ProperStrand	53	1	-3.1176
chr6	12047870	12067216	LTR	RLTR10	ERVK	chr6RLTR1012047594	NonProperStrand	2	chr6	12007026	12047836	protein_coding	Phf14	intron	ENSMUSG00000029629	ProperStrand	37	2	-inf
chr5	146261266	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr11	23645320	23645396	protein_coding	Rel	intron	ENSMUSG00000020275	ProperStrand	11	1	-11.3338
chrX	48121916	48121933	LINE	L1Md_F2	L1	chrXL1Md_F248119935	NonProperStrand	5	chr6	54633584	54633633	protein_coding	2410066E13Rik	intron	ENSMUSG00000038065	ProperStrand	7	1	-21.1751
chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	130238732	130238788	lincRNA	Gm16795	intron	ENSMUSG00000087251	ProperStrand	2	1	-5.3533
chr6	33960393	33960429	LTR	MERVL_2A-int	ERVL	chr6MERVL_2A-int33959313	ProperStrand	3	chr19	3456507	3456625	protein_coding	Ppp6r3	utr3	ENSMUSG00000024908	ProperStrand	213	1	-15.8356
chr17	39847341	39847369	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	135863197	135863732	pseudogene	Gm13013	.	ENSMUSG00000081330	NonProperStrand	2	1	-5.4040
chr17	39846601	39846645	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	24634361	24634395	LTR	ORR1A0	MaLR	chr5ORR1A024634086	NonProperStrand	1	1	-inf
chr10	86303445	86303503	antisense	Gm16268	.	ENSMUSG00000089959	NonProperStrand	2	chr10	86344919	86345010	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	81	1	-18.6285
chr18	36618579	36618638	LINE	L2a	L2	chr18L2a36618462	NonProperStrand	1	chr2	180037396	180037445	SINE	ID_B1	B4	chr2ID_B1180037409	NonProperStrand	1	1	-inf
chr6	82754258	82754348	SINE	ID_B1	B4	chr6ID_B182754275	NonProperStrand	4	chr6	82754145	82754245	SINE	RSINE1	B4	chr6RSINE182754125	NonProperStrand	4	4	-inf
chr17	39846644	39846752	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	38018403	38018420	SINE	B1_Mur1	Alu	chr15B1_Mur138018384	NonProperStrand	2	1	-5.3533
chr17	39847908	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	21703108	21703198	SINE	ID_B1	B4	chr9ID_B121703039	ProperStrand	5	1	-3.2379
chr15	62197398	62197431	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr8	11612584	11612627	protein_coding	Ankrd10	exon	ENSMUSG00000031508	ProperStrand	164	1	-4.2724
chr4	150575228	150575276	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr6	119761261	119773743	protein_coding	Erc1	intron	ENSMUSG00000030172	ProperStrand	98	1	-7.2442
chr11	109011645	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	85177750	85209138	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	5	-14.7753
chr1	161037418	161037435	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	8	chr8	70522529	70522550	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-11.5358
chr8	22379364	22380846	LINE	L1_Mus1	L1	chr8L1_Mus122378976	NonProperStrand	7	chr8	22377620	22377666	pseudogene	Gm15303	.	ENSMUSG00000082957	NonProperStrand	2	1	-21.4874
chr13	62438308	62438453	LTR	MMETn-int	ERVK	chr13MMETn-int62437959	ProperStrand	4	chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	1	-18.6637
chr1	20458366	20458387	protein_coding	Pkhd1	intron	ENSMUSG00000043760	ProperStrand	14	chr19	8903413	8903501	protein_coding	Hnrnpul2	intron	ENSMUSG00000071659	ProperStrand	40	1	-15.8130
chr3	52104924	52104951	protein_coding	Foxo1	intron	ENSMUSG00000044167	ProperStrand	6	chr12	109650635	109650710	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-12.5456
chr1	118868146	118868268	LINE	L1Md_F2	L1	chr1L1Md_F2118865948	NonProperStrand	11	chr9	108339522	108339538	protein_coding	BC048562	intron	ENSMUSG00000050641	NonProperStrand	1	1	-inf
chr10	12864151	12864229	LINE	L1MB3	L1	chr10L1MB312864158	NonProperStrand	1	chr10	12864105	12864153	SINE	B3	B2	chr10B312863953	ProperStrand	1	1	-inf
chr4	66459779	66459879	LINE	Lx3C	L1	chr4Lx3C66459771	NonProperStrand	1	chr4	66459393	66459483	LINE	MusHAL1	L1	chr4MusHAL166458941	ProperStrand	1	1	-inf
chr9	123462036	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	20494641	20494723	pseudogene	Gm17030	.	ENSMUSG00000090660	ProperStrand	3	1	-7.0114
chr18	25191771	25191824	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	chr6	8686167	8686210	protein_coding	Ica1	intron	ENSMUSG00000062995	ProperStrand	18	1	-11.4879
chr6	32613221	32613311	DNA	MER112	MER1_type	chr6MER11232613189	ProperStrand	1	chr6	32613411	32613511	DNA	URR1A	MER1_type	chr6URR1A32613331	ProperStrand	1	1	-inf
chr12	81140360	81140450	LINE	Lx8	L1	chr12Lx881140109	ProperStrand	2	chr12	81140474	81140574	LINE	Lx8	L1	chr12Lx881140498	ProperStrand	4	2	-inf
chr2	75610639	75610725	DNA	MER115	Tip100	chr2MER11575610528	ProperStrand	2	chr3	94863810	94863853	protein_coding	Pip5k1a	utr3	ENSMUSG00000028126	NonProperStrand	30	2	-inf
chr8	104391407	104391459	LINE	L1_Mus4	L1	chr8L1_Mus4104391318	NonProperStrand	5	chr16	33470553	33470645	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	1	-15.6092
chr6	114701931	114701950	protein_coding	Atg7	intron	ENSMUSG00000030314	NonProperStrand	3	chr15	81915696	81915810	protein_coding	Mei1	intron	ENSMUSG00000068117	NonProperStrand	96	1	-17.4336
chr10	122565824	122565914	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	chr2	60323935	60324035	protein_coding	Pla2r1	intron	ENSMUSG00000054580	NonProperStrand	8	1	-17.2652
chr15	10610440	10610516	protein_coding	Rai14	intron	ENSMUSG00000022246	ProperStrand	160	chr11	35969285	35969350	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-6.4339
chr6	88417486	88417533	protein_coding	Ruvbl1	intron	ENSMUSG00000030079	NonProperStrand	47	chr9	110281286	110281305	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.0514
chr8	53177332	53177422	LINE	Lx3B	L1	chr8Lx3B53176710	NonProperStrand	1	chr5	144625415	144625515	protein_coding	Eif2ak1	intron	ENSMUSG00000029613	NonProperStrand	1	1	-inf
chr8	106031575	106031604	LTR	RMER6C	ERVK	chr8RMER6C106031468	NonProperStrand	1	chr11	53138971	53139084	protein_coding	Zcchc10	intron	ENSMUSG00000018239	NonProperStrand	1	1	-inf
chr2	33245196	33245221	LTR	RLTR22_Mus	ERVK	chr2RLTR22_Mus33245166	ProperStrand	1	chr2	33245475	33245572	LTR	RMER10B	ERVL	chr2RMER10B33245502	NonProperStrand	1	1	-inf
chr11	116757693	116757737	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr11	60132254	60132345	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	1	-10.3144
chr17	39847215	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	21768985	21769787	SINE	B2_Mm1t	B2	chr9B2_Mm1t21768972	NonProperStrand	1	1	-inf
chr12	107389406	107389496	LTR	MT2A	ERVL	chr12MT2A107389017	ProperStrand	1	chr12	107389630	107389730	SINE	B1_Mm	Alu	chr12B1_Mm107389600	NonProperStrand	1	1	-inf
chr16	57155236	57155308	protein_coding	Tomm70a	utr3	ENSMUSG00000022752	ProperStrand	50	chr4	117153833	117153912	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-9.6109
chr16	17195642	17195732	protein_coding	Ube2l3	intron	ENSMUSG00000038965	ProperStrand	43	chr5	139754953	139755023	protein_coding	Adap1	intron	ENSMUSG00000056413	ProperStrand	64	1	-12.5653
chr12	108556985	108557071	LINE	L1_Mur2	L1	chr12L1_Mur2108556413	NonProperStrand	2	chr9	118674951	118675008	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr11	27162160	27162250	LINE	Lx7	L1	chr11Lx727161965	NonProperStrand	1	chr11	27162309	27162409	LINE	Lx7	L1	chr11Lx727162321	ProperStrand	1	1	-inf
chr17	39848124	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	17827048	17827163	protein_coding	Reps1	intron	ENSMUSG00000019854	ProperStrand	14	1	-4.0485
chr7	80225246	80225346	LINE	L1Md_A	L1	chr7L1Md_A80222876	NonProperStrand	13	chr9	40239131	40239221	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-11.1878
chr9	123461884	123461919	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr19	8889164	8890019	protein_coding	Ttc9c	intron	ENSMUSG00000071660	NonProperStrand	10	1	-4.3847
chr12	112751575	112751675	SINE	B2_Mm1t	B2	chr12B2_Mm1t112751493	ProperStrand	1	chr12	112751294	112751384	SINE	ID_B1	B4	chr12ID_B1112751219	ProperStrand	1	1	-inf
chr17	17618585	17618664	LINE	L1Md_F2	L1	chr17L1Md_F217618361	ProperStrand	1	chr13	103742062	103742111	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	1	-inf
chr10	96752714	96752815	LTR	ORR1E	MaLR	chr10ORR1E96752547	ProperStrand	1	chr17	39846701	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	118875258	118875348	LTR	RMER4A	ERVK	chr1RMER4A118875200	NonProperStrand	3	chr1	118875108	118875208	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n118875100	NonProperStrand	3	3	-inf
chrX	73717523	73717539	LINE	Lx4A	L1	chrXLx4A73716724	ProperStrand	12	chr2	73012739	73012765	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	1	-14.8390
chrX	60446967	60447057	LINE	L1_Mur3	L1	chrXL1_Mur360446051	ProperStrand	1	chrX	60447096	60447196	LINE	Lx7	L1	chrXLx760447036	ProperStrand	1	1	-inf
chr5	33508599	33508634	SINE	B3	B2	chr5B333508603	NonProperStrand	26	chr15	73159278	73159323	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	1	-9.1112
chr17	39843708	39843761	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr5	118128284	118128327	protein_coding	Ksr2	intron	ENSMUSG00000061578	NonProperStrand	228	3	-2.9996
chr17	39848098	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	84626568	84628328	protein_coding	Thada	intron	ENSMUSG00000024251	NonProperStrand	14	1	-4.0485
chr16	23110755	23110818	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr4	116555666	116555749	protein_coding	Zswim5	intron	ENSMUSG00000033948	ProperStrand	54	1	-10.1216
chr2	102829379	102829436	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr12	78350926	78351018	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-3.8408
chr10	128420144	128420195	SINE	B1_Mur2	Alu	chr10B1_Mur2128420146	NonProperStrand	1	chr10	128424024	128424085	SINE	B1_Mur3	Alu	chr10B1_Mur3128424028	NonProperStrand	1	1	-inf
chr19	53641613	53641713	LTR	RMER4A	ERVK	chr19RMER4A53641625	ProperStrand	7	chr19	53641308	53641612	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n53641459	ProperStrand	6	5	-inf
chr17	39846846	39847030	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	155657753	155657829	protein_coding	Fam83c	intron	ENSMUSG00000074647	ProperStrand	4	2	-6.6967
chr2	71414062	71414152	SINE	B3	B2	chr2B371414065	NonProperStrand	2	chr2	71414175	71414275	Simple_repeat	(GAGTG)n	Simple_repeat	chr2(GAGTG)n71414158	ProperStrand	9	2	-inf
chr14	17334968	17334986	protein_coding	Rarb	intron	ENSMUSG00000017491	ProperStrand	11	chr12	76822206	76822222	protein_coding	Sgpp1	intron	ENSMUSG00000021054	NonProperStrand	17	1	-17.9409
chr3	99219680	99219770	LTR	IAPEz-int	ERVK	chr3IAPEz-int99219638	NonProperStrand	1	chr3	99219490	99219590	LTR	IAPLTR1a_Mm	ERVK	chr3IAPLTR1a_Mm99219301	NonProperStrand	1	1	-inf
chr17	4082099	4082216	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	90395137	90395190	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	3	-12.5667
chr9	17987797	17987834	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr6	4757558	4757663	lincRNA	RP23-353M17.3	exon	ENSMUSG00000093570	NonProperStrand	55	1	-11.3167
chr11	116143462	116144444	protein_coding	Galr2	exon	ENSMUSG00000020793	NonProperStrand	3	chr8	85558308	85558380	protein_coding	Rnf150	intron	ENSMUSG00000047747	ProperStrand	60	1	-18.4556
chr17	39846786	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	110831490	110833795	SINE	B3	B2	chr8B3110831488	ProperStrand	1	1	-inf
chr1	119347801	119347915	LINE	L1Md_F2	L1	chr1L1Md_F2119343595	NonProperStrand	2	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr11	101523952	101524052	SINE	B1_Mus2	Alu	chr11B1_Mus2101523941	NonProperStrand	2	chr11	101524050	101524140	SINE	B2_Mm2	B2	chr11B2_Mm2101524069	NonProperStrand	2	2	-inf
chr9	123461850	123461876	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	36094032	36094048	protein_coding	Ptgs1	intron	ENSMUSG00000047250	ProperStrand	13	1	-3.8693
chr17	39847273	39848828	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	39844012	39848490	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1597	-20.2010
chrX	102502097	102502130	LINE	L1Md_F3	L1	chrXL1Md_F3102501909	NonProperStrand	1	chr17	39847438	39847461	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846932	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	57100412	57100428	protein_coding	Acer1	intron	ENSMUSG00000045019	ProperStrand	5	1	-3.1907
chr12	80192421	80193693	LINE	L1MDa	L1	chr12L1MDa80192813	ProperStrand	5	chr12	80191294	80192392	LTR	RLTR24	ERV1	chr12RLTR2480191308	ProperStrand	3	3	-inf
chr17	39848263	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	41478333	41478423	protein_coding-noncoding	Sclt1	utr3	ENSMUSG00000059834	ProperStrand	16	1	-3.7913
chr4	72192381	72192407	LINE	L1_Mur3	L1	chr4L1_Mur372191748	ProperStrand	2	chr17	39847183	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr1	183362529	183362620	protein_coding	Cnih3	intron	ENSMUSG00000026514	NonProperStrand	48	chr1	183362370	183362494	pseudogene	Gm16539	.	ENSMUSG00000089927	ProperStrand	3	3	-inf
chr13	44869593	44869712	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr17	29994849	29994867	protein_coding	Mdga1	intron	ENSMUSG00000043557	ProperStrand	16	1	-7.1067
chr17	39848134	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	37966465	37966535	protein_coding-noncoding	Svopl	utr3	ENSMUSG00000029830	NonProperStrand	8	1	-5.1688
chr17	4082494	4082584	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr14	78522676	78536785	LTR	RMER16-int	ERVK	chr14RMER16-int78535776	ProperStrand	3	1	-17.2804
chr13	44869628	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr3	89230481	89230497	protein_coding	Shc1	exon	ENSMUSG00000042626	ProperStrand	8	1	-8.5479
chr5	85357524	85357624	LINE	Lx7	L1	chr5Lx785357513	NonProperStrand	1	chr7	47188346	47188436	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	1	-inf
chr13	112578195	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr19	7088715	7088777	protein_coding	Fermt3	intron	ENSMUSG00000024965	NonProperStrand	49	1	-4.5930
chr16	32688410	32688510	SINE	B2_Mm2	B2	chr16B2_Mm232688405	NonProperStrand	1	chr16	32688004	32688094	SINE	B3	B2	chr16B332687904	ProperStrand	1	1	-inf
chr11	77793367	77793467	LINE	Lx9	L1	chr11Lx977793276	ProperStrand	7	chr11	77793137	77793227	SINE	B1_Mus2	Alu	chr11B1_Mus277793130	ProperStrand	1	1	-inf
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	116329864	116329964	antisense	Gm11739	.	ENSMUSG00000086826	ProperStrand	3	1	-4.3017
chr5	24652917	24653007	LTR	RLTR26	ERVK	chr5RLTR2624652666	NonProperStrand	1	chr5	24912796	24912896	protein_coding	Mll3	intron	ENSMUSG00000038056	NonProperStrand	7	1	-inf
chr11	108570787	108570806	protein_coding	Ccdc46	intron	ENSMUSG00000020728	NonProperStrand	33	chr4	155421753	155421847	protein_coding	Ttll10	intron	ENSMUSG00000029074	NonProperStrand	13	1	-16.3790
chr2	22744837	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	122357168	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	3	-9.2991
chr14	18269974	18270035	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	56	chr17	13677343	13677414	protein_coding	Tcte2	intron	ENSMUSG00000038347	ProperStrand	59	1	-12.1958
chr12	35625764	35625854	LINE	L1Md_F2	L1	chr12L1Md_F235625367	NonProperStrand	1	chr12	35625984	35626084	LTR	MuRRS-int	ERV1	chr12MuRRS-int35625904	ProperStrand	1	1	-inf
chr8	84680446	84680543	LINE	Lx6	L1	chr8Lx684678128	ProperStrand	5	chr17	39848126	39848159	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-6.1691
chr16	4044742	4044810	protein_coding	Trap1	intron	ENSMUSG00000005981	ProperStrand	68	chr2	156724812	156724890	pseudogene	Gm14278	.	ENSMUSG00000080880	NonProperStrand	97	1	-10.8051
chr5	114498935	114499035	protein_coding	Svop	intron	ENSMUSG00000042078	ProperStrand	15	chr15	94535187	94535277	protein_coding	Tmem117	intron	ENSMUSG00000063296	ProperStrand	43	1	-15.5315
chr14	31061725	31064758	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr4	95878124	95878197	protein_coding	Cyp2j7-ps	intron	ENSMUSG00000081362	NonProperStrand	27	2	-17.8312
chr8	22325017	22325107	LINE	L1_Mus1	L1	chr8L1_Mus122324864	NonProperStrand	1	chr8	22325331	22325431	LINE	L1_Mus1	L1	chr8L1_Mus122325291	ProperStrand	1	1	-inf
chr14	101696265	101696322	LINE	L1MA6	L1	chr14L1MA6101696111	ProperStrand	1	chr5	146260993	146261022	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr7	123349468	123349553	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	chr18	10151066	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	2	-17.0425
chr5	33519145	33519245	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr6	43336250	43336340	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	1	-10.0143
chr6	94569432	94569568	protein_coding	Lrig1	intron	ENSMUSG00000030029	NonProperStrand	43	chr7	139063952	139063974	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-9.5164
chr1	87363782	87363850	LINE	L1Md_F	L1	chr1L1Md_F87361511	ProperStrand	2	chr6	92813271	92813344	protein_coding	Adamts9	intron	ENSMUSG00000030022	ProperStrand	32	1	-19.8685
chr17	23548772	23548808	LINE	L1_Mur1	L1	chr17L1_Mur123547451	ProperStrand	4	chr17	25080259	25080327	protein_coding	Hn1l	utr3	ENSMUSG00000024165	NonProperStrand	6	1	-inf
chr11	78210331	78210383	antisense	Gm11194	.	ENSMUSG00000085747	NonProperStrand	1	chr11	78210701	78210797	protein_coding	Slc13a2	utr3	ENSMUSG00000001095	ProperStrand	33	1	-inf
chr12	69213083	69213183	LINE	Lx8	L1	chr12Lx869213027	NonProperStrand	1	chr12	69213248	69213338	LINE	Lx8	L1	chr12Lx869213216	NonProperStrand	2	1	-inf
chr1	32378551	32378651	protein_coding	Khdrbs2	intron	ENSMUSG00000026058	NonProperStrand	21	chr2	86842723	86842813	protein_coding	Olfr1102	exon	ENSMUSG00000049843	ProperStrand	2	1	-20.4508
chr17	4082254	4082344	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr1	44374859	44374959	LINE	L1_Mus1	L1	chr1L1_Mus144374716	ProperStrand	1	1	-inf
chr17	39847030	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	32327666	32327756	SINE	MIRb	MIR	chr17MIRb32327639	ProperStrand	1	1	-inf
chr12	80224896	80224986	LTR	MERVL-int	ERVL	chr12MERVL-int80224802	ProperStrand	30	chr12	80224685	80224785	LTR	ORR1A3-int	MaLR	chr12ORR1A3-int80224706	ProperStrand	4	3	-inf
chr5	74540436	74540505	DNA	MER2B	MER2_type	chr5MER2B74540398	NonProperStrand	2	chr5	74537344	74537404	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n74537320	ProperStrand	2	2	-inf
chr12	29011599	29011637	LINE	Lx8	L1	chr12Lx829011426	NonProperStrand	1	chr9	108565148	108565351	protein_coding	Slc25a20	intron	ENSMUSG00000032602	ProperStrand	44	1	-inf
chr9	77923878	77923978	LINE	L1_Mur3	L1	chr9L1_Mur377923831	NonProperStrand	8	chr9	77923761	77923851	SINE	B2_Mm2	B2	chr9B2_Mm277923638	NonProperStrand	7	7	-inf
chr5	35805162	35805221	SINE	MIR	MIR	chr5MIR35805167	NonProperStrand	1	chr7	66065201	66065245	protein_coding	Atp10a	intron	ENSMUSG00000025324	ProperStrand	84	1	-inf
chr8	111155179	111155220	LTR	MLT1I	MaLR	chr8MLT1I111155144	ProperStrand	4	chr11	88554342	88554373	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	2	-19.1046
chr4	150376012	150376099	SINE	ID4_	ID	chr4ID4_150376012	ProperStrand	1	chr18	6077312	6077341	protein_coding	Arhgap12	intron	ENSMUSG00000041225	ProperStrand	63	1	-inf
chr11	5788535	5791806	SINE	B2_Mm1a	B2	chr11B2_Mm1a5788554	NonProperStrand	2	chr11	5797088	5797114	protein_coding	Myl7	intron	ENSMUSG00000020469	NonProperStrand	8	1	-23.4058
chr1	36075947	36076010	LTR	ORR1A4	MaLR	chr1ORR1A436075812	NonProperStrand	2	chr13	97190563	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr6	8821047	8821137	LINE	L1MA5	L1	chr6L1MA58820923	ProperStrand	1	chr6	8821285	8821385	LINE	L1MA5	L1	chr6L1MA58821162	ProperStrand	1	1	-inf
chr11	19950678	19950758	LTR	MTB-int	MaLR	chr11MTB-int19950632	ProperStrand	1	chr17	39846977	39847027	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	97348897	97348997	protein_coding-noncoding	Ciapin1	utr3	ENSMUSG00000031781	ProperStrand	1	chr8	97349228	97349318	protein_coding	Ciapin1	intron	ENSMUSG00000031781	ProperStrand	1	1	-inf
chr10	81108841	81108931	protein_coding	Ankrd24	intron	ENSMUSG00000054708	ProperStrand	17	chr10	81108940	81115107	protein_coding	Gm10778	intron	ENSMUSG00000074860	ProperStrand	46	7	-inf
chr5	62926704	62926804	LINE	L1Md_T	L1	chr5L1Md_T62926614	ProperStrand	1	chr5	62926237	62926327	LINE	Lx5	L1	chr5Lx562925827	ProperStrand	1	1	-inf
chr1	152900546	152900583	LINE	L2b	L2	chr1L2b152900268	ProperStrand	1	chr1	152900684	152900768	LTR	MTD	MaLR	chr1MTD152900697	NonProperStrand	1	1	-inf
chr12	85002013	85002032	protein_coding	Rbm25	intron	ENSMUSG00000010608	ProperStrand	19	chr13	97190546	97190575	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.4076
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	53488935	53488970	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	1	-7.1148
chr7	5409579	5409669	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	chr18	33276814	33276914	protein_coding	Camk4	intron	ENSMUSG00000038128	ProperStrand	6	1	-20.1678
chr9	123461899	123461945	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	46146439	46146489	protein_coding	Tstd2	exon	ENSMUSG00000035495	NonProperStrand	8	1	-4.8360
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	5	-6.3465
chr7	63938629	63938701	LINE	L1Md_T	L1	chr7L1Md_T63934844	ProperStrand	27	chr9	17987799	17987838	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	1	-12.7570
chr2	43321980	43322080	LTR	MT2A	ERVL	chr2MT2A43321782	NonProperStrand	1	chr2	43321704	43321794	LTR	ORR1A2	MaLR	chr2ORR1A243321468	ProperStrand	1	1	-inf
chr14	120938571	120938628	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n120938477	ProperStrand	9	chr11	106454952	106455019	protein_coding	Tex2	intron	ENSMUSG00000040548	ProperStrand	28	1	-17.4330
chr2	109980165	109980245	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	chr1	131573996	131574035	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-6.1014
chr6	3201470	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	66226731	66226787	protein_coding	Scn1a	intron	ENSMUSG00000064329	ProperStrand	19	1	-5.0638
chr17	39847672	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	122294141	122294244	LTR	MTC	MaLR	chr5MTC122294165	NonProperStrand	1	1	-inf
chr16	49796611	49796711	antisense	Gm15518	.	ENSMUSG00000087066	ProperStrand	2	chr16	49875935	49876025	protein_coding	Cd47	intron	ENSMUSG00000055447	ProperStrand	2	1	-19.8939
chr17	39847260	39847324	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	46761213	46761235	antisense	Gm14697	.	ENSMUSG00000086948	NonProperStrand	3	1	-5.4882
chr12	99645561	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr17	39847438	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	9	-5.3164
chr5	110324637	110324728	LTR	ORR1A2-int	MaLR	chr5ORR1A2-int110324546	ProperStrand	2	chr5	110324727	110324754	LTR	ORR1A2-int	MaLR	chr5ORR1A2-int110324717	ProperStrand	1	1	-inf
chr17	39847207	39847261	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	137347723	137347745	protein_coding	Ptpro	intron	ENSMUSG00000030223	ProperStrand	3	1	-5.4882
chrX	150807087	150807136	LINE	L1VL4	L1	chrXL1VL4150806730	NonProperStrand	1	chrX	150811906	150811965	LINE	L1_Mm	L1	chrXL1_Mm150811045	NonProperStrand	1	1	-inf
chr2	166152345	166152442	LINE	L1MB3	L1	chr2L1MB3166152352	NonProperStrand	9	chr2	166152211	166152331	SINE	B3	B2	chr2B3166152121	NonProperStrand	8	7	-inf
chr13	48871185	48871201	LINE	L1MB3	L1	chr13L1MB348870583	NonProperStrand	1	chr17	39845958	39845984	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr7	34215780	34215880	LINE	L1M2	L1	chr7L1M234215676	ProperStrand	13	chr15	82162535	82162625	protein_coding	Naga	intron	ENSMUSG00000022453	NonProperStrand	23	1	-17.0936
chr9	108087795	108088302	protein_coding	Bsn	intron	ENSMUSG00000032589	ProperStrand	35	chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-11.5427
chr17	39847159	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	122357166	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	16	-3.1750
chr9	62795574	62795632	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	chr2	5379274	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.3959
chr9	35165667	35165749	SINE	MIRb	MIR	chr9MIRb35165521	ProperStrand	1	chr19	5843446	5843509	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	1	-inf
chr13	100723610	100723689	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	chr6	140470080	140470111	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	1	-10.1533
chr5	146260994	146261038	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	38967780	38967875	protein_coding	Tbc1d12	intron	ENSMUSG00000048720	ProperStrand	51	1	-5.3791
chr4	109714019	109714042	LINE	L1Md_A	L1	chr4L1Md_A109712267	NonProperStrand	2	chr2	167063485	167063555	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-18.6285
chr17	88019331	88019377	DNA	Charlie12	MER1_type	chr17Charlie1288019297	NonProperStrand	1	chr17	88017110	88017166	LTR	LTR37B	ERV1	chr17LTR37B88017011	NonProperStrand	1	1	-inf
chr7	143575424	143575521	LINE	L1MCa	L1	chr7L1MCa143575364	NonProperStrand	5	chr7	68103280	68103326	LINE	L1Md_F3	L1	chr7L1Md_F368103148	ProperStrand	3	1	-inf
chr9	20663458	20663566	SINE	B1_Mur2	Alu	chr9B1_Mur220663466	NonProperStrand	3	chr9	20655556	20662301	Simple_repeat	(T)n	Simple_repeat	chr9(T)n20655532	ProperStrand	1	1	-inf
chr17	39847103	39847286	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	60842899	60865321	protein_coding	Eif3a	intron	ENSMUSG00000024991	ProperStrand	3	2	-9.8423
chr14	60694125	60694202	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr14	60706192	60706259	protein_coding	4930563I02Rik	intron	ENSMUSG00000086112	ProperStrand	10	1	-13.2532
chr2	18988922	18989022	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n18988822	NonProperStrand	2	chr2	18989108	18989198	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n18989046	NonProperStrand	8	2	-inf
chr17	39846940	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	65925043	65925093	LTR	RMER16-int	ERVK	chr6RMER16-int65924847	ProperStrand	2	1	-5.3533
chr17	39847207	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	70453180	70453237	protein_coding	Gp1ba	exon	ENSMUSG00000050675	ProperStrand	1	1	-inf
chr5	76966725	76966825	protein_coding	Exoc1	exon	ENSMUSG00000036435	ProperStrand	20	chr8	25157423	25157513	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	3	-21.9108
chr11	47223655	47223673	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	49	chr15	81704908	81704936	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	1	-11.9295
chr7	65997010	65997057	protein_coding	Atp10a	intron	ENSMUSG00000025324	ProperStrand	84	chr12	54068621	54068733	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-8.9537
chr1	63210157	63210206	protein_coding	Ndufs1	intron	ENSMUSG00000025968	NonProperStrand	47	chr9	65201724	65201821	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	3	-inf
chr2	151503139	151504160	LTR	ORR1B1	MaLR	chr2ORR1B1151503880	ProperStrand	2	chr2	151504158	151505409	antisense	BC052486	.	ENSMUSG00000087035	NonProperStrand	5	2	-inf
chr17	39847636	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	106954314	106954389	SINE	B1_Mur1	Alu	chr13B1_Mur1106954298	NonProperStrand	1	1	-inf
chr5	33522285	33522376	Simple_repeat	(CATATA)n	Simple_repeat	chr5(CATATA)n33522246	NonProperStrand	1	chr7	98174844	98174944	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-inf
chr7	30025510	30025579	protein_coding	Yif1b	intron	ENSMUSG00000030588	ProperStrand	27	chr2	5379278	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.1101
chr7	138654586	138654605	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr6	100613681	100613746	protein_coding	Shq1	intron	ENSMUSG00000035378	ProperStrand	53	1	-9.0955
chr10	60229405	60229495	protein_coding	Unc5b	intron	ENSMUSG00000020099	ProperStrand	2	chr5	114851993	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-16.7741
chr19	6309796	6310237	protein_coding	Cdc42bpg	exon	ENSMUSG00000024769	ProperStrand	92	chr9	20509988	20510073	protein_coding	Olfm2	intron	ENSMUSG00000032172	ProperStrand	64	2	-17.3415
chr17	39846759	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	33228427	33228524	SINE	B4A	B4	chr2B4A33228402	NonProperStrand	5	1	-3.1907
chr2	132708305	132708405	LTR	RLTR31_Mur	ERVK	chr2RLTR31_Mur132708312	NonProperStrand	1	chr2	132708220	132708310	SINE	B2_Mm2	B2	chr2B2_Mm2132708114	ProperStrand	1	1	-inf
chr17	39845565	39845624	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	10911724	10911793	protein_coding	Pacrg	intron	ENSMUSG00000037196	NonProperStrand	22	1	-4.0524
chr3	88543669	88543773	LTR	RMER15	ERVL	chr3RMER1588543620	ProperStrand	1	chr3	88543480	88543509	protein_coding	Gm10253	utr5	ENSMUSG00000068924	NonProperStrand	1	1	-inf
chr1	30860480	30860582	protein_coding	Phf3	utr3	ENSMUSG00000048874	ProperStrand	18	chr5	116975538	116975571	protein_coding	Srrm4	intron	ENSMUSG00000063919	ProperStrand	4	1	-20.0512
chr17	39846656	39846703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	75644897	75644989	SINE	MIR	MIR	chr12MIR75644771	ProperStrand	1	1	-inf
chr1	61660085	61660155	LTR	RMER20B	ERVK	chr1RMER20B61659796	ProperStrand	3	chr1	61717224	61717304	protein_coding	Pard3b	intron	ENSMUSG00000052062	ProperStrand	43	3	-inf
chr17	39847844	39847898	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	10263124	10263196	lincRNA	Gm13261	intron	ENSMUSG00000086748	NonProperStrand	2	1	-5.4040
chr4	101659192	101659282	LTR	MT2C_Mm	ERVL	chr4MT2C_Mm101659157	NonProperStrand	1	chr3	113052946	113053046	protein_coding	Amy2a5	intron	ENSMUSG00000074268	NonProperStrand	1	1	-inf
chr5	145290637	145290657	SINE	B1F2	Alu	chr5B1F2145290563	ProperStrand	1	chr8	78543964	78544056	SINE	B4A	B4	chr8B4A78543969	NonProperStrand	2	1	-inf
chr3	97919871	97919957	protein_coding	Notch2	intron	ENSMUSG00000027878	ProperStrand	21	chr1	172506812	172506862	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	2	-18.8760
chr6	33424712	33424802	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr7	4811894	4811994	protein_coding	Isoc2b	intron	ENSMUSG00000052605	ProperStrand	64	1	-6.6852
chr9	100478907	100478996	LINE	L1M4	L1	chr9L1M4100478872	NonProperStrand	1	chr9	100479360	100479399	SINE	RSINE1	B4	chr9RSINE1100479337	NonProperStrand	1	1	-inf
chr5	146280767	146280858	LINE	L1Md_F2	L1	chr5L1Md_F2146277668	NonProperStrand	11	chr5	146276765	146276812	LTR	RMER17D2	ERVK	chr5RMER17D2146276210	ProperStrand	4	1	-inf
chr17	39846726	39846780	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	140105294	140105357	SINE	B1_Mur1	Alu	chr5B1_Mur1140105268	NonProperStrand	1	1	-inf
chr13	18988960	18989060	LTR	MTE2b	MaLR	chr13MTE2b18988947	NonProperStrand	3	chr13	18988866	18988956	Other	RMER1A	Other	chr13RMER1A18988796	ProperStrand	3	3	-inf
chr11	107385807	107385874	lincRNA	C330019F10Rik	intron	ENSMUSG00000085864	ProperStrand	30	chr6	12026559	12026643	protein_coding	Phf14	intron	ENSMUSG00000029629	ProperStrand	37	1	-14.4063
chr18	49501719	49501819	LINE	L1Md_F2	L1	chr18L1Md_F249501671	NonProperStrand	1	chr18	49502074	49502164	LTR	MLT1C	MaLR	chr18MLT1C49502055	NonProperStrand	1	1	-inf
chr9	123461837	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr12	4958170	4990969	protein_coding	Atad2b	intron	ENSMUSG00000052812	ProperStrand	35	2	-3.7764
chr11	76212606	76212649	protein_coding	Nxn	utr5	ENSMUSG00000020844	ProperStrand	42	chr13	36568307	36568384	protein_coding	Fars2	intron	ENSMUSG00000021420	NonProperStrand	24	1	-14.6068
chr1	13330472	13330570	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	chr16	91374835	91374862	protein_coding	Ifnar2	intron	ENSMUSG00000022971	ProperStrand	7	1	-14.1905
chr1	179232468	179232551	Simple_repeat	(GAA)n	Simple_repeat	chr1(GAA)n179232433	NonProperStrand	1	chr2	92337571	92337618	lincRNA	Gm13814	intron	ENSMUSG00000085261	ProperStrand	42	1	-inf
chr9	35624054	35624144	LTR	MMETn-int	ERVK	chr9MMETn-int35622477	NonProperStrand	7	chr9	35624170	35624270	LTR	MMETn-int	ERVK	chr9MMETn-int35624076	NonProperStrand	7	7	-inf
chr14	86687203	86687302	LINE	Lx5	L1	chr14Lx586686450	NonProperStrand	1	chr4	117202595	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	1	-inf
chr6	146645978	146646015	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n146645982	ProperStrand	1	chr8	39086215	39086256	protein_coding	Sgcz	intron	ENSMUSG00000039539	NonProperStrand	40	1	-inf
chr17	39847216	39847263	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	109204558	109204576	protein_coding	Vav3	intron	ENSMUSG00000033721	NonProperStrand	6	1	-3.9545
chr12	32954365	32954390	LINE	L1_Mur1	L1	chr12L1_Mur132954356	NonProperStrand	2	chr17	84190848	84190898	protein_coding	Mta3	intron	ENSMUSG00000055817	ProperStrand	24	1	-20.2563
chr6	112906969	112906994	LINE	L2	L2	chr6L2112906854	NonProperStrand	1	chr6	112938560	112938608	LTR	RMER17B	ERVK	chr6RMER17B112937856	NonProperStrand	3	1	-inf
chr2	131292330	131292420	LINE	L1_Mur3	L1	chr2L1_Mur3131292283	NonProperStrand	1	chr2	131292457	131292557	LTR	ORR1C2	MaLR	chr2ORR1C2131292425	ProperStrand	1	1	-inf
chr9	106834218	106835556	protein_coding	Dock3	intron	ENSMUSG00000039716	NonProperStrand	44	chr2	75676171	75676278	protein_coding	Agps	intron	ENSMUSG00000042410	NonProperStrand	122	1	-11.2224
chr3	129707359	129711301	protein_coding	Sec24b	intron	ENSMUSG00000001052	ProperStrand	10	chr9	123461977	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr17	39846659	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	52557166	52557218	LTR	RLTR46	ERVK	chrXRLTR4652557177	ProperStrand	1	1	-inf
chr9	114671394	114671473	protein_coding	Cmtm7	intron	ENSMUSG00000032436	ProperStrand	11	chr8	87551661	87551719	protein_coding	2310036O22Rik	intron	ENSMUSG00000041203	ProperStrand	1	1	-inf
chr15	76592314	76592369	protein_coding	Arhgap39	intron	ENSMUSG00000033697	NonProperStrand	6	chr16	4636651	4636715	protein_coding	Coro7	intron	ENSMUSG00000039637	ProperStrand	312	1	-13.4823
chr15	75784556	75784626	LTR	RMER16-int	ERVK	chr15RMER16-int75783922	NonProperStrand	1	chr15	75839893	75839980	protein_coding	Fam83h	utr5	ENSMUSG00000046761	ProperStrand	26	1	-inf
chr16	41116648	41116748	LINE	L1MA4	L1	chr16L1MA441116670	ProperStrand	1	chr16	41116455	41116545	LINE	Lx9	L1	chr16Lx941116297	ProperStrand	1	1	-inf
chr17	39846452	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	96588937	96588982	SINE	B1_Mur3	Alu	chr15B1_Mur396588883	ProperStrand	1	1	-inf
chr8	84422755	84422830	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr5	138503775	138503812	pseudogene	Smok3c	.	ENSMUSG00000079156	NonProperStrand	1	1	-inf
chr18	74778382	74778488	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	68	chr1	79603508	79603539	protein_coding	Ap1s3	utr3	ENSMUSG00000054702	ProperStrand	24	1	-13.6280
chr9	18346477	18346515	LINE	L1Md_F2	L1	chr9L1Md_F218346319	ProperStrand	1	chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	75362577	75362627	LTR	RLTR17	ERVK	chr17RLTR1775362342	ProperStrand	1	chr7	139492135	139492208	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-inf
chr2	145667764	145667831	protein_coding	Rin2	intron	ENSMUSG00000001768	NonProperStrand	2	chr4	117579115	117579192	protein_coding	Ipo13	intron	ENSMUSG00000033365	NonProperStrand	67	1	-19.1379
chr17	39843002	39843053	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr13	49702545	49703262	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	1	-5.8649
chr14	105725531	105725547	LINE	L1MCb	L1	chr14L1MCb105725521	ProperStrand	1	chr2	164443056	164443182	protein_coding	Wfdc6b	intron	ENSMUSG00000070531	NonProperStrand	21	1	-inf
chr17	34952235	34952295	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr12	82397435	82397512	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	2	-14.7658
chr14	19278160	19278199	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr18	10151034	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-12.5794
chr2	53256160	53256260	LINE	L1MC1	L1	chr2L1MC153256127	ProperStrand	1	chr2	53256641	53256731	pseudogene	Gm13501	.	ENSMUSG00000082472	ProperStrand	1	1	-inf
chr11	79738260	79738280	LTR	RLTR18	ERVK	chr11RLTR1879738162	NonProperStrand	2	chr16	98063178	98063238	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	1	-19.5799
chr9	123085437	123085542	protein_coding	Cdcp1	intron	ENSMUSG00000035498	ProperStrand	55	chr9	115139689	115139729	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	1	-9.8753
chr15	35109107	35109207	LINE	Lx	L1	chr15Lx35108895	NonProperStrand	1	chr15	35761202	35761292	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	1	-inf
chr5	135380476	135380573	protein_coding	Wbscr28	intron	ENSMUSG00000040576	NonProperStrand	2	chr3	31120307	31120366	protein_coding	Slc7a14	intron	ENSMUSG00000069072	NonProperStrand	43	1	-20.6040
chr12	51925052	51925100	LINE	Lx	L1	chr12Lx51923263	NonProperStrand	2	chr3	32365837	32365941	protein_coding	Pik3ca	utr3	ENSMUSG00000027665	ProperStrand	5	1	-inf
chr3	61359135	61359225	LINE	L1Md_A	L1	chr3L1Md_A61359029	ProperStrand	1	chr3	61358730	61358830	SINE	B4A	B4	chr3B4A61358728	NonProperStrand	1	1	-inf
chr5	33532831	33532911	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr19	41953801	41953941	protein_coding	Rrp12	intron	ENSMUSG00000035049	ProperStrand	51	1	-11.3434
chr12	110556259	110556308	LTR	RMER19B	ERVK	chr12RMER19B110555681	ProperStrand	1	chr17	39847446	39847505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	167425252	167425305	processed_transcript	Gm11476	.	ENSMUSG00000085596	ProperStrand	21	chr12	3724410	3724492	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	1	-12.6930
chr15	48261416	48261506	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr1	58161081	58161181	protein_coding	Aox1	intron	ENSMUSG00000063558	ProperStrand	6	1	-14.9310
chr12	80254276	80254383	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr12	32382563	32382580	protein_coding	Cog5	intron	ENSMUSG00000035933	NonProperStrand	2	1	-17.3471
chr6	41277375	41277475	LINE	Lx2	L1	chr6Lx241277379	ProperStrand	1	chr6	41277285	41277375	LINE	Lx2B	L1	chr6Lx2B41277167	NonProperStrand	1	1	-inf
chr1	33501840	33501942	LINE	L1Md_F	L1	chr1L1Md_F33500535	ProperStrand	5	chr4	123404440	123404477	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int123402099	NonProperStrand	3	1	-inf
chr1	119461433	119461451	LINE	Lx2B	L1	chr1Lx2B119461299	ProperStrand	7	chr17	39843479	39843590	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-6.7356
chr3	95183023	95183052	LTR	RLTR45-int	ERVK	chr3RLTR45-int95182039	NonProperStrand	1	chr17	29302143	29302182	protein_coding	Cpne5	intron	ENSMUSG00000024008	NonProperStrand	18	1	-inf
chr6	122736683	122736736	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr1	187236380	187236423	protein_coding	Eprs	intron	ENSMUSG00000026615	ProperStrand	26	1	-10.6985
chr4	123412592	123412689	protein_coding	Akirin1	utr3	ENSMUSG00000023075	ProperStrand	9	chr9	123461991	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr10	62827277	62827321	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr16	17848061	17848156	protein_coding	Gm20518	intron	ENSMUSG00000092470	ProperStrand	59	1	-9.3805
chrX	20675581	20675668	LINE	L1_Mur2	L1	chrXL1_Mur220674220	ProperStrand	4	chr17	39843709	39843760	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-8.4460
chr12	85343487	85343538	LTR	MTC	MaLR	chr12MTC85343344	NonProperStrand	4	chr4	97822262	97822358	protein_coding	Nfia	intron	ENSMUSG00000028565	ProperStrand	16	1	-inf
chr9	57441602	57441702	protein_coding	Ulk3	intron	ENSMUSG00000032308	NonProperStrand	19	chr9	59657921	59658011	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	2	-13.7278
chr16	15636759	15637177	protein_coding	Mcm4	intron	ENSMUSG00000022673	ProperStrand	19	chr19	10629539	10629639	protein_coding	Tmem216	utr5	ENSMUSG00000024667	NonProperStrand	60	1	-14.3582
chr17	39847673	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	46380325	46380964	protein_coding	Nfkb2	intron	ENSMUSG00000025225	NonProperStrand	3	1	-4.3512
chr18	77475495	77475514	protein_coding	St8sia5	intron	ENSMUSG00000025425	ProperStrand	1	chr4	135247496	135247618	protein_coding	Il28ra	intron	ENSMUSG00000062157	NonProperStrand	41	1	-inf
chr11	75492095	75492267	SINE	B1F	Alu	chr11B1F75492084	NonProperStrand	2	chr13	97190561	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chrX	90078731	90078821	LINE	L1MC1	L1	chrXL1MC190078578	NonProperStrand	1	chrX	90078325	90078425	LTR	RLTR16	ERVK	chrXRLTR1690078097	NonProperStrand	1	1	-inf
chr16	4785022	4785071	protein_coding	5730403B10Rik	intron	ENSMUSG00000004071	ProperStrand	45	chr5	30064141	30064180	protein_coding	Dnajb6	intron	ENSMUSG00000029131	NonProperStrand	15	1	-15.4228
chr12	78350936	78351023	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr14	30463228	30463244	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	112	1	-4.6838
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	41019563	41019644	LTR	RMER19B	ERVK	chr8RMER19B41019107	NonProperStrand	1	1	-inf
chr17	39848637	39848688	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	47758149	47758251	protein_coding-noncoding	Med20	utr5	ENSMUSG00000092558	ProperStrand	21	1	-3.5346
chr10	17903724	17903743	LINE	Lx8	L1	chr10Lx817903716	NonProperStrand	2	chr11	97728971	97729080	protein_coding	Fbxo47	intron	ENSMUSG00000070336	ProperStrand	56	1	-19.4250
chr5	52750245	52750334	LINE	L1MC4a	L1	chr5L1MC4a52750175	NonProperStrand	1	chr5	52749985	52750046	Low_complexity	CT-rich	Low_complexity	chr5CT-rich52749972	ProperStrand	1	1	-inf
chr8	114827032	114827116	LINE	Lx3A	L1	chr8Lx3A114826788	ProperStrand	6	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr5	138300858	138301162	LTR	RLTR10B2	ERVK	chr5RLTR10B2138300917	ProperStrand	6	chr5	138300190	138300850	SINE	ID_B1	B4	chr5ID_B1138300740	NonProperStrand	3	3	-inf
chr17	39847894	39847966	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	125281311	125281393	protein_coding	Scnn1a	intron	ENSMUSG00000030340	NonProperStrand	5	1	-3.2379
chr17	39847799	39847860	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	80205904	80206005	Simple_repeat	(TAGA)n	Simple_repeat	chr17(TAGA)n80205900	NonProperStrand	4	1	-3.7035
chr17	39846731	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	93825778	93825816	protein_coding	Hdac4	utr3	ENSMUSG00000073617	NonProperStrand	4	1	-3.6552
chr8	43137639	43137702	LINE	L1_Mus3	L1	chr8L1_Mus343136987	ProperStrand	1	chr14	72556667	72556711	SINE	B1F	Alu	chr14B1F72556624	NonProperStrand	1	1	-inf
chr5	146261163	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	114244791	114244810	LTR	IAPLTR2_Mm	ERVK	chrXIAPLTR2_Mm114244505	NonProperStrand	2	1	-12.4657
chr17	39847867	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	120773747	120779149	protein_coding	Tmco2	intron	ENSMUSG00000078577	ProperStrand	1	1	-inf
chr17	45569571	45569616	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr8	107164309	107164364	protein_coding	Fam96b	intron	ENSMUSG00000031879	NonProperStrand	1	1	-inf
chr9	48171561	48171657	protein_coding	Fam55d	intron	ENSMUSG00000044229	ProperStrand	43	chr12	41806799	41806828	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	1	-12.5653
chr16	10042495	10042595	LTR	MTC	MaLR	chr16MTC10042304	NonProperStrand	1	chr16	10042720	10042810	SINE	B4A	B4	chr16B4A10042712	ProperStrand	1	1	-inf
chr11	24139120	24139197	SINE	B1_Mur3	Alu	chr11B1_Mur324139108	ProperStrand	1	chr4	106579637	106579659	SINE	B1_Mus1	Alu	chr4B1_Mus1106579596	NonProperStrand	1	1	-inf
chr2	85434326	85434426	LINE	L1_Mur3	L1	chr2L1_Mur385433817	NonProperStrand	1	chr2	85434621	85434711	LINE	L1_Mur3	L1	chr2L1_Mur385434432	NonProperStrand	2	1	-inf
chr5	121205006	121205145	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.5116
chr12	112117500	112117518	protein_coding	Cinp	intron	ENSMUSG00000021276	NonProperStrand	26	chr19	3815387	3815403	protein_coding	Suv420h1	exon	ENSMUSG00000045098	ProperStrand	19	1	-16.0482
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr2	5379265	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	9	-8.6319
chr7	16327733	16327833	LINE	Lx3C	L1	chr7Lx3C16327191	ProperStrand	20	chr7	16330650	16336751	protein_coding	Obox5	intron	ENSMUSG00000074366	NonProperStrand	30	1	-15.6560
chr18	19967903	19968003	LINE	Lx7	L1	chr18Lx719967762	ProperStrand	1	chr18	19968421	19968511	Simple_repeat	(GA)n	Simple_repeat	chr18(GA)n19968417	NonProperStrand	1	1	-inf
chr17	39846733	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	36939365	36939383	protein_coding	Hars	intron	ENSMUSG00000001380	ProperStrand	3	1	-4.3017
chr13	12297728	12297772	protein_coding	Mtr	intron	ENSMUSG00000021311	ProperStrand	8	chr4	83329338	83329376	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-14.8887
chr17	39845837	39845927	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr9	114554094	114554194	SINE	B3	B2	chr9B3114554014	NonProperStrand	3	1	-7.9693
chr17	39847767	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	24409699	24409735	antisense	4933426D04Rik	.	ENSMUSG00000086446	ProperStrand	1	1	-inf
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	69682761	69682777	SINE	MIR	MIR	chr11MIR69682658	ProperStrand	1	1	-inf
chr13	119737125	119737155	LTR	LTR40a	ERVL	chr13LTR40a119736836	NonProperStrand	1	chr17	39846452	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	115669785	115669875	SINE	B2_Mm1t	B2	chr6B2_Mm1t115669765	ProperStrand	1	chr6	115669603	115669703	SINE	B3A	B2	chr6B3A115669495	NonProperStrand	1	1	-inf
chr11	19215648	19215689	LINE	L1_Mus3	L1	chr11L1_Mus319214896	ProperStrand	1	chr5	34950438	34950489	protein_coding	Add1	intron	ENSMUSG00000029106	ProperStrand	14	1	-inf
chr5	33533032	33533087	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr5	33511978	33512036	SINE	B4A	B4	chr5B4A33511798	ProperStrand	3	1	-17.3746
chr3	111088777	111088867	LINE	Lx	L1	chr3Lx111087581	ProperStrand	1	chr6	33781382	33781482	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-inf
chr2	22744876	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	57453631	57564256	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	3	-8.5447
chr3	153936374	153936421	LINE	Lx4A	L1	chr3Lx4A153936329	ProperStrand	1	chr3	153933077	153933134	protein_coding	Slc44a5	utr3	ENSMUSG00000028360	NonProperStrand	290	1	-inf
chr11	50815341	50815372	LINE	L1M4c	L1	chr11L1M4c50815328	NonProperStrand	1	chr4	132463811	132463865	protein_coding	Fam76a	intron	ENSMUSG00000028878	ProperStrand	25	1	-inf
chr17	39848248	39848347	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	123700075	123700931	protein_coding	Fyco1	utr3	ENSMUSG00000025241	ProperStrand	2	1	-8.4422
chr14	96073418	96073508	LINE	Lx4B	L1	chr14Lx4B96073327	ProperStrand	1	chr14	96073174	96073274	LTR	RMER12	ERVK	chr14RMER1296072664	ProperStrand	1	1	-inf
chr1	43758214	43758304	LTR	ORR1C2	MaLR	chr1ORR1C243757981	NonProperStrand	1	chr1	43757700	43757733	Low_complexity	GA-rich	Low_complexity	chr1GA-rich43757610	NonProperStrand	1	1	-inf
chrX	161042245	161042335	LINE	L1_Mur2	L1	chrXL1_Mur2161041203	NonProperStrand	1	chrX	161042431	161042531	LTR	ORR1A4	MaLR	chrXORR1A4161042374	ProperStrand	1	1	-inf
chr2	103661894	103661994	SINE	B2_Mm2	B2	chr2B2_Mm2103661902	NonProperStrand	1	chr2	103571032	103571122	protein_coding	Nat10	intron	ENSMUSG00000027185	NonProperStrand	54	1	-inf
chr8	107382968	107382996	LINE	L1Md_T	L1	chr8L1Md_T107381590	ProperStrand	1	chr8	107386756	107386851	LINE	L1Md_T	L1	chr8L1Md_T107384090	ProperStrand	1	1	-inf
chr13	63400761	63400798	protein_coding	2010111I01Rik	utr3	ENSMUSG00000021458	NonProperStrand	40	chr13	63277434	63277514	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	1	-9.6419
chr2	136673675	136673765	LTR	RMER15	ERVL	chr2RMER15136673594	NonProperStrand	1	chr2	136673943	136674043	LTR	RMER15	ERVL	chr2RMER15136673949	NonProperStrand	1	1	-inf
chr11	88862027	88864534	protein_coding	Trim25	intron	ENSMUSG00000000275	NonProperStrand	36	chr11	88845734	88846531	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	3	-inf
chr19	6975040	6975140	SINE	B3	B2	chr19B36975063	NonProperStrand	2	chr19	6977117	6977207	SINE	MIRb	MIR	chr19MIRb6977121	NonProperStrand	1	1	-inf
chr17	39847284	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	44796161	44796187	SINE	B3A	B2	chr13B3A44796166	NonProperStrand	3	1	-5.4882
chr2	102829376	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr6	100236094	100236166	protein_coding	Rybp	intron	ENSMUSG00000072872	ProperStrand	21	1	-12.0023
chr17	39847823	39847952	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	10437965	10437981	protein_coding	Snx16	exon	ENSMUSG00000027534	NonProperStrand	3	1	-4.3512
chr1	151623330	151623420	LINE	Lx8	L1	chr1Lx8151623315	NonProperStrand	1	chr1	151623528	151623628	LTR	MLT1H1	MaLR	chr1MLT1H1151623530	ProperStrand	1	1	-inf
chr4	137633443	137633472	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr4	141312980	141313019	protein_coding	Agmat	intron	ENSMUSG00000040706	ProperStrand	58	5	-21.5431
chr9	123462082	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	89277035	89277098	protein_coding	Plxna1	intron	ENSMUSG00000030084	ProperStrand	9	1	-4.5963
chr18	46136643	46136743	LINE	L1MC2	L1	chr18L1MC246136606	NonProperStrand	1	chr18	46136810	46136900	SINE	RSINE1	B4	chr18RSINE146136761	NonProperStrand	1	1	-inf
chr7	11876874	11876964	LINE	Lx2	L1	chr7Lx211876462	NonProperStrand	1	chr7	11877054	11877154	LTR	RLTR13D3	ERVK	chr7RLTR13D311877012	NonProperStrand	1	1	-inf
chr4	43550599	43550682	protein_coding	Tln1	intron	ENSMUSG00000028465	ProperStrand	46	chr16	20686346	20686558	protein_coding	Eif4g1	intron	ENSMUSG00000045983	ProperStrand	123	1	-11.1163
chr11	69669714	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr16	5014625	5014693	protein_coding	Glyr1	utr3	ENSMUSG00000022536	ProperStrand	66	1	-8.8257
chr16	13813576	13813630	protein_coding	Rrn3	utr3	ENSMUSG00000022682	ProperStrand	46	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.4960
chr7	122019935	122020022	LINE	L1ME3	L1	chr7L1ME3122019942	NonProperStrand	1	chr14	19278161	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-inf
chr17	74724638	74724696	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n74724541	ProperStrand	1	chr17	74777725	74780865	protein_coding	Spast	intron	ENSMUSG00000024068	ProperStrand	20	1	-inf
chr2	22744886	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr12	38835699	38835751	protein_coding	Dgkb	intron	ENSMUSG00000036095	ProperStrand	31	1	-8.1297
chr5	33230210	33230300	protein_coding-noncoding	Depdc5	utr5	ENSMUSG00000037426	ProperStrand	1	chr5	33230324	33230424	protein_coding	Depdc5	intron	ENSMUSG00000037426	ProperStrand	5	1	-inf
chr14	105156874	105157005	LINE	L1_Mm	L1	chr14L1_Mm105156865	ProperStrand	3	chr17	39847355	39847376	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr4	21235345	21235435	LTR	ORR1D2-int	MaLR	chr4ORR1D2-int21234276	ProperStrand	1	chr4	21235576	21235676	LTR	ORR1D2-int	MaLR	chr4ORR1D2-int21235511	ProperStrand	1	1	-inf
chr5	121281085	121281816	LTR	ORR1A4	MaLR	chr5ORR1A4121281037	NonProperStrand	1	chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	1	-inf
chr16	91482041	91482091	Low_complexity	GA-rich	Low_complexity	chr16GA-rich91482004	NonProperStrand	1	chr15	63993823	63993883	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	1	-inf
chr6	3201408	3201553	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	6	-3.3368
chr11	79441000	79496636	protein_coding	Rab11fip4	intron	ENSMUSG00000017639	ProperStrand	32	chr13	97190561	97190632	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-10.3245
chr17	56788807	56788888	protein_coding	Tmem146	intron	ENSMUSG00000040828	NonProperStrand	78	chr8	14940630	14940701	protein_coding	Arhgef10	intron	ENSMUSG00000071176	ProperStrand	37	1	-12.4716
chr7	49047214	49047304	LINE	L1Md_T	L1	chr7L1Md_T49047238	ProperStrand	1	chr7	49046895	49046995	LINE	L1_Mur1	L1	chr7L1_Mur149045498	ProperStrand	1	1	-inf
chr1	105980319	105980419	LINE	Lx6	L1	chr1Lx6105980326	NonProperStrand	1	chr1	105980424	105980514	LTR	RLTR12B	ERVK	chr1RLTR12B105980444	NonProperStrand	1	1	-inf
chr3	96889739	96889829	LTR	MMETn-int	ERVK	chr3MMETn-int96888824	ProperStrand	1	chr3	96889871	96889971	SINE	B2_Mm1t	B2	chr3B2_Mm1t96889877	ProperStrand	1	1	-inf
chr10	112787851	112787870	LTR	MLT1A0-int	MaLR	chr10MLT1A0-int112787402	NonProperStrand	3	chr17	39847222	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr17	7822299	7822399	LTR	MTD	MaLR	chr17MTD7822268	ProperStrand	1	chr17	7822732	7822822	LTR	ORR1D1	MaLR	chr17ORR1D17822679	NonProperStrand	1	1	-inf
chr19	8874147	8874173	SINE	B1_Mus2	Alu	chr19B1_Mus28874076	ProperStrand	1	chr19	8872066	8872253	protein_coding	Polr2g	intron	ENSMUSG00000071662	NonProperStrand	28	1	-inf
chr4	69051723	69051775	LINE	L1_Mus1	L1	chr4L1_Mus169051717	ProperStrand	1	chr6	8332216	8332304	protein_coding	Gm16039	intron	ENSMUSG00000089862	ProperStrand	20	1	-inf
chr5	27103822	27103875	LINE	Lx8	L1	chr5Lx827103576	ProperStrand	1	chr10	41528973	41529036	protein_coding	Cep57l1	intron	ENSMUSG00000019813	NonProperStrand	53	1	-inf
chr12	8291347	8291397	protein_coding	1110057K04Rik	utr3	ENSMUSG00000037669	ProperStrand	64	chr8	95852263	95852365	protein_coding	Ces1g	exon	ENSMUSG00000057074	ProperStrand	20	1	-14.1244
chr15	99301507	99301611	protein_coding	Bcdin3d	intron	ENSMUSG00000037525	NonProperStrand	16	chr18	75592768	75592817	protein_coding	Ctif	utr3	ENSMUSG00000052928	ProperStrand	59	2	-inf
chr12	88481445	88481536	protein_coding	Pomt2	intron	ENSMUSG00000034126	NonProperStrand	15	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-16.5449
chr2	44581183	44581222	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	85	chr4	149726595	149726694	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	1	-8.3196
chr8	72483672	72483689	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	chr15	79565687	79565813	protein_coding	Sun2	intron	ENSMUSG00000042524	ProperStrand	7	1	-14.5216
chr17	39847844	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	128559090	128559261	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n128559158	NonProperStrand	3	1	-4.3512
chr8	33881763	33881865	DNA	Tigger12A	MER2_type	chr8Tigger12A33881700	NonProperStrand	1	chr8	33881985	33882032	Simple_repeat	(CTTTG)n	Simple_repeat	chr8(CTTTG)n33881918	NonProperStrand	2	1	-inf
chr13	51110145	51110235	LTR	MER21B	ERV1	chr13MER21B51109951	ProperStrand	2	chr13	51110257	51110357	SINE	B1_Mus1	Alu	chr13B1_Mus151110251	ProperStrand	2	2	-inf
chr17	4082116	4082208	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr15	31458978	31459079	protein_coding	March6	intron	ENSMUSG00000039100	ProperStrand	11	1	-11.1156
chr12	69211392	69212269	LINE	L1_Mus3	L1	chr12L1_Mus369211195	NonProperStrand	2	chr12	69226416	69228164	LINE	Lx3C	L1	chr12Lx3C69226024	NonProperStrand	2	1	-19.8939
chr2	58083752	58083770	LINE	L1_Mus3	L1	chr2L1_Mus358081863	ProperStrand	8	chr11	101604951	101605036	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-16.6160
chr3	75621452	75621469	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr17	39843588	39843615	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-3.3329
chr8	70895399	70895444	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr2	63836607	63836640	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-10.0634
chr17	39846955	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	88806759	88806776	SINE	MIRb	MIR	chr17MIRb88806718	ProperStrand	1	1	-inf
chr14	63138393	63138472	LINE	Lx7	L1	chr14Lx763138376	ProperStrand	1	chr17	39847277	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	122313914	122314004	DNA	URR1A	MER1_type	chr8URR1A122313923	ProperStrand	1	chr8	122314116	122314216	SINE	B1_Mur4	Alu	chr8B1_Mur4122314073	NonProperStrand	1	1	-inf
chr17	39846375	39846429	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	90347864	90347908	SINE	PB1	Alu	chr5PB190347784	NonProperStrand	1	1	-inf
chr10	46851857	46851957	DNA	RMER30	MER1_type	chr10RMER3046851780	ProperStrand	1	chr10	47194193	47194283	LTR	MTB_Mm	MaLR	chr10MTB_Mm47193996	NonProperStrand	1	1	-inf
chr12	52519667	52519691	protein_coding	Scfd1	intron	ENSMUSG00000020952	ProperStrand	18	chr4	149984768	149984864	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	2	-17.9331
chr5	103417157	103417247	protein_coding-noncoding	Mapk10	utr3	ENSMUSG00000046709	ProperStrand	1	chr5	103416836	103416936	protein_coding	Mapk10	intron	ENSMUSG00000046709	ProperStrand	9	1	-inf
chr2	22744863	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	37553440	37553484	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	1	-6.2150
chr17	70784046	70784129	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr2	163393012	163393076	protein_coding	Hnf4a	intron	ENSMUSG00000017950	NonProperStrand	3	1	-14.8056
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr16	31272687	31272807	protein_coding	Ppp1r2	intron	ENSMUSG00000047714	ProperStrand	18	1	-10.2836
chr8	83573250	83573316	LINE	Lx3_Mus	L1	chr8Lx3_Mus83571406	ProperStrand	29	chr15	81173158	81173214	protein_coding	Slc25a17	intron	ENSMUSG00000022404	ProperStrand	110	6	-20.1097
chr7	30022291	30022344	SINE	B2_Mm1t	B2	chr7B2_Mm1t30022268	NonProperStrand	4	chr7	30015164	30017231	protein_coding	Kcnk6	intron	ENSMUSG00000046410	NonProperStrand	14	1	-20.8232
chr17	39846464	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	126491073	126491092	protein_coding	Gabpb1	intron	ENSMUSG00000027361	ProperStrand	3	1	-4.3017
chr11	40753968	40754068	SINE	B3A	B2	chr11B3A40753868	ProperStrand	1	chr11	40754097	40754187	Simple_repeat	(TCTCC)n	Simple_repeat	chr11(TCTCC)n40754082	NonProperStrand	1	1	-inf
chr18	80738329	80738383	LTR	MTEa-int	MaLR	chr18MTEa-int80738341	NonProperStrand	1	chr18	80738162	80738259	LTR	MTEa	MaLR	chr18MTEa80738116	NonProperStrand	1	1	-inf
chr8	104258200	104258308	LINE	L1_Mur2	L1	chr8L1_Mur2104258063	ProperStrand	2	chr8	104261243	104261272	SINE	B1_Mus1	Alu	chr8B1_Mus1104261241	ProperStrand	1	1	-inf
chr18	36647988	36648030	Low_complexity	CT-rich	Low_complexity	chr18CT-rich36647975	ProperStrand	3	chr13	113993221	113993273	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-14.8536
chr15	98529290	98529316	LTR	MT2B	ERVL	chr15MT2B98529076	ProperStrand	2	chr15	98528867	98528955	SINE	B2_Mm1a	B2	chr15B2_Mm1a98528877	ProperStrand	1	1	-inf
chr19	4158798	4158888	protein_coding-noncoding	Rps6kb2	utr3	ENSMUSG00000024830	ProperStrand	4	chr19	4158684	4158786	protein_coding	Rps6kb2	utr5	ENSMUSG00000024830	ProperStrand	6	4	-inf
chr3	98151048	98151138	LTR	MTC	MaLR	chr3MTC98150686	ProperStrand	1	chr3	98151139	98151239	LTR	MTD	MaLR	chr3MTD98151115	NonProperStrand	1	1	-inf
chr5	65408815	65408937	protein_coding	Fam114a1	intron	ENSMUSG00000029185	ProperStrand	13	chr3	101713957	101713975	protein_coding	Slc22a15	intron	ENSMUSG00000033147	ProperStrand	2	1	-inf
chr17	39847160	39847275	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	12	2	-4.7040
chr15	81624606	81626341	protein_coding	Zc3h7b	utr3	ENSMUSG00000022390	ProperStrand	45	chr7	30125394	30125461	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	NonProperStrand	39	1	-13.4740
chr5	29107004	29107104	lincRNA	9530036O11Rik	intron	ENSMUSG00000086663	NonProperStrand	35	chr10	73472354	73472444	protein_coding	Pcdh15	intron	ENSMUSG00000052613	NonProperStrand	45	2	-21.5625
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr3	116633866	116634909	protein_coding	Palmd	intron	ENSMUSG00000033377	ProperStrand	33	1	-13.3361
chr7	97516359	97516467	protein_coding	Sytl2	intron	ENSMUSG00000030616	ProperStrand	31	chr9	110281290	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.8892
chr7	88367752	88367842	protein_coding	Pde8a	intron	ENSMUSG00000025584	NonProperStrand	8	chr7	88367349	88367448	pseudogene	Gm7180	.	ENSMUSG00000083774	ProperStrand	1	1	-inf
chr16	53467465	53467555	DNA	URR1B	MER1_type	chr16URR1B53467397	ProperStrand	1	chr16	53467167	53467267	LTR	MERVL_2A-int	ERVL	chr16MERVL_2A-int53465944	ProperStrand	1	1	-inf
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr15	47539993	47540117	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-9.7630
chr17	39843403	39843487	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	108565200	108565250	protein_coding	Rab3b	intron	ENSMUSG00000003411	NonProperStrand	12	1	-5.6158
chr17	39847843	39847913	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	57154374	57154434	LTR	MTA_Mm-int	MaLR	chr9MTA_Mm-int57153685	NonProperStrand	1	1	-inf
chr10	83381165	83381235	Simple_repeat	(TC)n	Simple_repeat	chr10(TC)n83381180	ProperStrand	3	chr3	86042843	86042890	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-16.7034
chr19	4765034	4765101	protein_coding	Rbm4b	intron	ENSMUSG00000033760	NonProperStrand	33	chr11	50922432	50922448	pseudogene	Gm12202	.	ENSMUSG00000080918	NonProperStrand	1	1	-inf
chr4	84839222	84839322	LINE	L1Md_F2	L1	chr4L1Md_F284838690	NonProperStrand	1	chr4	84839474	84839564	LINE	L1Md_F2	L1	chr4L1Md_F284839247	NonProperStrand	1	1	-inf
chr7	56132526	56134649	lincRNA	Gm2788	intron	ENSMUSG00000085995	ProperStrand	6	chr7	56131859	56132468	protein_coding	E2f8	intron	ENSMUSG00000046179	NonProperStrand	4	1	-inf
chrX	144385728	144385871	SINE	ID_B1	B4	chrXID_B1144385722	NonProperStrand	1	mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	12	1	-inf
chr9	40804747	40804837	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr6	120666165	120666188	protein_coding	Cecr2	intron	ENSMUSG00000071226	ProperStrand	59	1	-7.4730
chr9	15448263	15448353	LINE	Lx5	L1	chr9Lx515447786	ProperStrand	1	chr9	15448516	15448616	LTR	ORR1A2	MaLR	chr9ORR1A215448395	ProperStrand	1	1	-inf
chr10	39650222	39650301	LINE	L1_Mus3	L1	chr10L1_Mus339648820	NonProperStrand	9	chr13	97190562	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.9531
chr13	21780424	21780524	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr17	70963685	70963775	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-6.8682
chr11	93949985	93950033	protein_coding	Spag9	intron	ENSMUSG00000020859	NonProperStrand	74	chr12	105031074	105031114	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	1	-8.7828
chr17	39846353	39846416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	91642688	91642761	LTR	MTE2b	MaLR	chr8MTE2b91642675	NonProperStrand	1	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr4	44182678	44182756	protein_coding	Rnf38	intron	ENSMUSG00000035696	ProperStrand	57	1	-10.7004
chr17	39848634	39848713	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	60820113	60820140	Simple_repeat	(TATG)n	Simple_repeat	chr2(TATG)n60819950	NonProperStrand	1	1	-inf
chr10	58445076	58445166	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	NonProperStrand	17	chr10	58301347	58301447	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-12.6792
chr13	119450704	119450732	LTR	MLT1A0	MaLR	chr13MLT1A0119450488	ProperStrand	1	chr11	120346508	120346732	protein_coding	Mrpl12	exon	ENSMUSG00000039640	NonProperStrand	89	1	-inf
chr17	39847551	39847578	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	102569656	102569673	SINE	B3A	B2	chr12B3A102569599	ProperStrand	1	1	-inf
chr18	53288888	53288978	SINE	B1_Mur1	Alu	chr18B1_Mur153288826	ProperStrand	2	chr18	53288988	53289088	SINE	B1_Mur3	Alu	chr18B1_Mur353288975	ProperStrand	2	2	-inf
chrX	73689928	73689997	LINE	L1_Mur1	L1	chrXL1_Mur173687574	ProperStrand	2	chrX	73690525	73690584	LINE	L1_Mus4	L1	chrXL1_Mus473690400	NonProperStrand	1	1	-inf
chr5	118695306	118712432	protein_coding	2410131K14Rik	utr5	ENSMUSG00000032840	ProperStrand	127	chr5	118692457	118694136	protein_coding	Rnft2	intron	ENSMUSG00000032850	NonProperStrand	136	2	-14.0886
chr18	33988302	33988353	protein_coding	Epb4.1l4a	intron	ENSMUSG00000024376	ProperStrand	71	chr17	66484587	66484655	protein_coding	Ddx11	intron	ENSMUSG00000035842	ProperStrand	5	1	-16.9025
chr6	125164386	125164463	DNA	Kanga1d	Tc2	chr6Kanga1d125164279	NonProperStrand	5	chr7	114057771	114057831	protein_coding	Olfr1532-ps1	exon	ENSMUSG00000073899	NonProperStrand	1	1	-inf
chr17	29994848	29994867	protein_coding	Mdga1	intron	ENSMUSG00000043557	ProperStrand	16	chr18	84521686	84521800	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-12.2157
chr16	78910751	78910851	LTR	ORR1D2	MaLR	chr16ORR1D278910705	ProperStrand	1	chr16	78910257	78910347	LTR	RLTR11A	ERVK	chr16RLTR11A78910126	NonProperStrand	1	1	-inf
chr9	44138451	44138469	protein_coding	Dpagt1	intron	ENSMUSG00000032123	NonProperStrand	3	chr9	21625070	21625134	protein_coding	Dock6	intron	ENSMUSG00000032198	NonProperStrand	39	1	-19.1271
chr8	95755007	95755097	SINE	B3	B2	chr8B395755013	NonProperStrand	1	chr8	95753069	95754998	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-inf
chr11	84360926	84361011	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n84360914	ProperStrand	2	chr14	23225930	23225947	protein_coding	1700112E06Rik	intron	ENSMUSG00000063458	ProperStrand	19	1	-20.1864
chr11	87566165	87566265	SINE	B3	B2	chr11B387566057	ProperStrand	1	chr11	87574262	87574352	protein_coding	Bzrap1	utr5	ENSMUSG00000034156	ProperStrand	10	1	-inf
chr17	4082153	4082250	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr9	17987811	17987834	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	1	-6.7900
chr11	60538844	60538908	protein_coding	Flii	intron	ENSMUSG00000002812	NonProperStrand	22	chr11	60558301	60558383	protein_coding	Top3a	intron	ENSMUSG00000002814	NonProperStrand	55	1	-14.2310
chr12	68727390	68727480	LINE	L1Md_F2	L1	chr12L1Md_F268727390	ProperStrand	1	chr12	68727611	68727711	LINE	L1Md_F2	L1	chr12L1Md_F268727513	ProperStrand	1	1	-inf
chr7	56231583	56231654	SINE	B3	B2	chr7B356231476	NonProperStrand	1	chr6	122729374	122729414	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-inf
chr17	39846430	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	135521764	135521875	protein_coding-noncoding	Slc39a8	utr5	ENSMUSG00000053897	NonProperStrand	1	1	-inf
chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	43662224	43662299	protein_coding	Npr2	intron	ENSMUSG00000028469	NonProperStrand	2	1	-5.3533
chr1	156757725	156757825	LINE	L1MA4	L1	chr1L1MA4156757389	NonProperStrand	1	chr1	156758408	156758498	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n156758424	NonProperStrand	1	1	-inf
chr5	129519557	129519617	DNA	MER2	MER2_type	chr5MER2129519336	NonProperStrand	3	chr5	129521550	129521600	LINE	L2b	L2	chr5L2b129521550	NonProperStrand	1	1	-inf
chr17	39847206	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	52365216	52365243	pseudogene	Gm7958	.	ENSMUSG00000084229	NonProperStrand	1	1	-inf
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr7	141882955	141882983	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-4.6948
chr19	8888599	8888659	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	chrX	8062480	8062550	protein_coding	Ssxb6	intron	ENSMUSG00000079702	NonProperStrand	21	1	-12.4931
chr9	64177801	64177951	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr16	20296158	20296241	protein_coding	Parl	intron	ENSMUSG00000033918	ProperStrand	33	1	-10.1489
chr13	73764508	73764589	protein_coding	Tert	exon	ENSMUSG00000021611	ProperStrand	54	chr18	84980896	84980967	protein_coding	Gm17266	intron	ENSMUSG00000092153	NonProperStrand	19	1	-14.5640
chr12	71097958	71098043	LINE	Lx7	L1	chr12Lx771097488	ProperStrand	2	chr18	56717554	56717607	protein_coding	Aldh7a1	intron	ENSMUSG00000053644	NonProperStrand	85	1	-18.7124
chr16	88148926	88149016	protein_coding	Grik1	intron	ENSMUSG00000022935	NonProperStrand	10	chr16	67225553	67230294	protein_coding	Cadm2	intron	ENSMUSG00000064115	NonProperStrand	20	1	-17.9669
chr17	39846726	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	119038794	119038889	protein_coding	Zfyve19	intron	ENSMUSG00000068580	ProperStrand	4	1	-3.6552
chr15	78283948	78283998	protein_coding	Tmprss6	intron	ENSMUSG00000016942	ProperStrand	3	chr10	93484602	93484627	protein_coding	Vezt	intron	ENSMUSG00000036099	NonProperStrand	24	1	-20.7706
chr13	103053712	103053744	LINE	L1_Mus4	L1	chr13L1_Mus4103053297	NonProperStrand	1	chr17	70963690	70963790	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr14	81680611	81680701	LINE	HAL1-3A_ME	L1	chr14HAL1-3A_ME81680552	ProperStrand	1	chr14	81680477	81680577	Low_complexity	CT-rich	Low_complexity	chr14CT-rich81680373	NonProperStrand	1	1	-inf
chr3	41600071	41600162	LINE	L1Md_F2	L1	chr3L1Md_F241599914	ProperStrand	8	chr3	41601377	41601477	LINE	L1Md_F2	L1	chr3L1Md_F241600916	ProperStrand	9	5	-inf
chr5	108093039	108093125	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr9	110281282	110281337	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-8.0514
chr11	116473322	116473361	protein_coding	Rhbdf2	intron	ENSMUSG00000020806	ProperStrand	55	chr1	78467977	78469278	protein_coding	Farsb	intron	ENSMUSG00000026245	ProperStrand	84	1	-11.5211
chr18	67378846	67378863	protein_coding	Gnal	intron	ENSMUSG00000024524	NonProperStrand	3	chr5	36550076	36550180	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-16.0255
chr2	146873395	146873485	protein_coding-noncoding	Xrn2	utr5	ENSMUSG00000027433	ProperStrand	2	chr2	146873547	146873647	protein_coding	Xrn2	intron	ENSMUSG00000027433	ProperStrand	27	2	-inf
chr13	90852986	90853076	LINE	L1_Mus3	L1	chr13L1_Mus390852913	NonProperStrand	1	chr13	90853185	90853285	SINE	RSINE1	B4	chr13RSINE190853182	NonProperStrand	1	1	-inf
chr2	175140498	175140568	LINE	L1_Mur3	L1	chr2L1_Mur3175140511	ProperStrand	1	chr17	39847978	39848036	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	103995976	103996066	LINE	L1MDa	L1	chr8L1MDa103995704	NonProperStrand	1	chr8	103996425	103996525	LINE	Lx3C	L1	chr8Lx3C103996425	NonProperStrand	1	1	-inf
chr17	39846299	39846433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	119244064	119244081	protein_coding	Cacna2d4	intron	ENSMUSG00000041460	NonProperStrand	5	1	-3.1907
chr2	16221432	16221522	LTR	ORR1E	MaLR	chr2ORR1E16221420	NonProperStrand	1	chr7	5409488	5409588	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	1	-inf
chr17	66369423	66369547	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	chrX	7158974	7158990	protein_coding	Ppp1r3f	intron	ENSMUSG00000039556	ProperStrand	6	1	-14.1141
chr1	6715084	6715105	protein_coding	St18	intron	ENSMUSG00000033740	NonProperStrand	13	chr16	28865881	28865943	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	1	-13.7355
chr17	6123349	6123459	protein_coding-noncoding	Tulp4	utr5	ENSMUSG00000034377	ProperStrand	12	chr19	7456120	7456158	protein_coding	AI846148	intron	ENSMUSG00000024970	ProperStrand	33	1	-16.5510
chr17	39846470	39846497	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	144359808	144359891	SINE	B3	B2	chrXB3144359705	ProperStrand	1	1	-inf
chr7	105862165	105862207	protein_coding	Prkrir	intron	ENSMUSG00000030753	NonProperStrand	4	chr12	81757766	81757870	protein_coding	Slc39a9	intron	ENSMUSG00000048833	NonProperStrand	63	1	-17.6816
chr12	78350921	78351045	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	48586985	48587021	protein_coding	Morc1	intron	ENSMUSG00000022652	ProperStrand	96	2	-8.2085
chr15	8057442	8057480	LTR	RMER6B	ERVK	chr15RMER6B8057052	ProperStrand	1	chr15	8056441	8056547	SINE	B2_Mm1t	B2	chr15B2_Mm1t8056370	ProperStrand	1	1	-inf
chr16	14467045	14467088	protein_coding-noncoding	Abcc1	utr5	ENSMUSG00000023088	ProperStrand	5	chrX	20658425	20658458	protein_coding	Zfp300	utr3	ENSMUSG00000031079	NonProperStrand	18	1	-20.3145
chr11	8634605	8634705	LTR	MMETn-int	ERVK	chr11MMETn-int8634503	ProperStrand	2	chr11	8634763	8634853	SINE	B2_Mm1a	B2	chr11B2_Mm1a8634785	ProperStrand	2	2	-inf
chr2	164246018	164246118	SINE	B2_Mm2	B2	chr2B2_Mm2164245968	ProperStrand	1	chr2	164245887	164245977	SINE	B3	B2	chr2B3164245776	ProperStrand	1	1	-inf
chr1	17166558	17166648	LTR	MERVL_2A-int	ERVL	chr1MERVL_2A-int17166349	NonProperStrand	1	chr1	17166676	17166776	LTR	MERVL_2A-int	ERVL	chr1MERVL_2A-int17166659	NonProperStrand	1	1	-inf
chr1	83888222	83888275	LINE	Lx5	L1	chr1Lx583888153	NonProperStrand	1	chr1	83887134	83887164	LTR	ORR1C1	MaLR	chr1ORR1C183887120	ProperStrand	1	1	-inf
chr5	114852016	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr9	62377336	62377614	protein_coding	Coro2b	intron	ENSMUSG00000041729	NonProperStrand	105	1	-8.1837
chr2	29021920	29021938	protein_coding	Setx	intron	ENSMUSG00000043535	ProperStrand	1	chr8	94181972	94182008	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	1	-inf
chr18	37014687	37014754	LTR	ORR1A0-int	MaLR	chr18ORR1A0-int37014111	ProperStrand	1	chr9	123461991	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	5667934	5667982	protein_coding	Steap2	utr3	ENSMUSG00000015653	NonProperStrand	2	chr18	60776517	60776941	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	1	-17.5337
chr11	3319648	3319695	protein_coding	Rnf185	intron	ENSMUSG00000020448	NonProperStrand	8	chr4	41256085	41256180	protein_coding	Dcaf12	intron	ENSMUSG00000028436	ProperStrand	14	1	-18.6834
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr10	62279185	62279211	protein_coding	Tet1	exon	ENSMUSG00000047146	ProperStrand	49	1	-6.9732
chr1	92129765	92129833	DNA	URR1B	MER1_type	chr1URR1B92129729	NonProperStrand	1	chr1	92132447	92132491	LTR	ORR1D2	MaLR	chr1ORR1D292132337	ProperStrand	8	1	-inf
chr1	67201419	67201490	protein_coding	Cps1	intron	ENSMUSG00000025991	NonProperStrand	3	chr2	32217257	32217329	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	193	1	-16.0350
chr17	39844632	39844722	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr7	5097170	5097270	LINE	L1_Mur2	L1	chr7L1_Mur25096984	ProperStrand	3	1	-8.6751
chr13	44869579	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chrX	139122546	139122597	protein_coding	Tmem164	intron	ENSMUSG00000047045	NonProperStrand	26	1	-6.1280
chr17	39847276	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	114952972	114953033	Simple_repeat	(TTC)n	Simple_repeat	chr7(TTC)n114952765	ProperStrand	3	1	-5.4882
chr17	39845505	39845591	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr18	7106115	7106136	protein_coding	Armc4	intron	ENSMUSG00000061802	ProperStrand	7	1	-6.3587
chr7	28820702	28821402	LINE	Lx3C	L1	chr7Lx3C28821078	ProperStrand	11	chr7	28821266	28821904	LINE	Lx3C	L1	chr7Lx3C28821181	ProperStrand	34	8	-inf
chr17	39847443	39847512	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	69054690	69054749	protein_coding	G6pc2	intron	ENSMUSG00000005232	ProperStrand	5	1	-3.2379
chr12	80205059	80209429	LTR	RLTR14	ERV1	chr12RLTR1480209155	NonProperStrand	1	chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-12.0500
chr2	5379308	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr14	32340411	32340476	protein_coding	Colq	intron	ENSMUSG00000057606	NonProperStrand	51	1	-4.8610
chr16	96356553	96356653	SINE	B1_Mus1	Alu	chr16B1_Mus196356531	ProperStrand	1	chr16	96356440	96356530	SINE	B2_Mm2	B2	chr16B2_Mm296356353	ProperStrand	1	1	-inf
chr1	191621810	191621826	protein_coding	Ptpn14	intron	ENSMUSG00000026604	ProperStrand	53	chr4	155495752	155495805	protein_coding	9430015G10Rik	intron	ENSMUSG00000059939	ProperStrand	31	1	-13.6084
chr6	60205385	60205485	LINE	Lx2B	L1	chr6Lx2B60205359	NonProperStrand	1	chr6	58932873	58932963	processed_transcript	BB365896	.	ENSMUSG00000092323	ProperStrand	4	1	-inf
chr12	40205504	40205563	LINE	Lx5	L1	chr12Lx540204776	NonProperStrand	3	chr17	39847438	39847487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr16	8947538	8947638	LTR	RLTR20A2	ERVK	chr16RLTR20A28947429	ProperStrand	1	chr16	8947126	8947216	SINE	B4	B4	chr16B48947105	NonProperStrand	1	1	-inf
chr6	65927957	65936005	LINE	Lx8	L1	chr6Lx865927782	ProperStrand	1	chr6	65886090	65901775	protein_coding	Prdm5	utr3	ENSMUSG00000029913	ProperStrand	205	1	-inf
chrX	20676033	20678240	LINE	L1VL2	L1	chrXL1VL220675726	NonProperStrand	5	chr3	107311576	107311622	protein_coding	Slc6a17	intron	ENSMUSG00000027894	ProperStrand	46	1	-17.7828
chr3	57845146	57845175	LINE	L1_Mur3	L1	chr3L1_Mur357844923	NonProperStrand	1	chr3	57844785	57844897	SINE	B1_Mus1	Alu	chr3B1_Mus157844744	NonProperStrand	1	1	-inf
chr8	84476724	84476804	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr9	15382356	15382377	protein_coding	Ccdc67	intron	ENSMUSG00000039977	ProperStrand	1	1	-inf
chr1	135569668	135569787	SINE	B1_Mus2	Alu	chr1B1_Mus2135569662	ProperStrand	5	chr1	135569563	135569679	SINE	B2_Mm1t	B2	chr1B2_Mm1t135569483	ProperStrand	5	5	-inf
chr9	56223609	56223626	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	chr10	21954544	21954565	protein_coding	H60b	intron	ENSMUSG00000075297	ProperStrand	30	1	-9.8949
chr1	126685118	126685218	Simple_repeat	(TATATG)n	Simple_repeat	chr1(TATATG)n126685038	ProperStrand	1	chr1	126684913	126685003	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n126684916	ProperStrand	1	1	-inf
chr17	23768170	23768270	protein_coding	Mmp25	intron	ENSMUSG00000023903	ProperStrand	4	chr4	45379137	45379227	protein_coding	Dcaf10	intron	ENSMUSG00000035572	NonProperStrand	18	3	-inf
chr7	133320205	133320305	protein_coding	Xpo6	intron	ENSMUSG00000000131	NonProperStrand	2	chr7	133319700	133319790	pseudogene	Gm17136	.	ENSMUSG00000057945	ProperStrand	1	1	-inf
chr10	20327102	20327174	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr8	124284788	124284864	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	1	-6.1076
chr11	102686035	102686087	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n102685974	NonProperStrand	1	chr2	164889466	164889607	protein_coding	Cd40	intron	ENSMUSG00000017652	ProperStrand	36	1	-inf
chr7	52763035	52763096	protein_coding	Tulp2	intron	ENSMUSG00000023467	ProperStrand	1	chr4	117154103	117154161	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-inf
chr1	182329928	182329952	protein_coding	Itpkb	intron	ENSMUSG00000038855	NonProperStrand	42	chr4	11178071	11178185	protein_coding	Ints8	intron	ENSMUSG00000040738	ProperStrand	18	1	-15.1922
chr17	39847439	39847521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	78527403	78527451	LTR	RMER17A-int	ERVK	chrXRMER17A-int78527171	NonProperStrand	1	1	-inf
chr3	49273003	49273103	LINE	Lx3C	L1	chr3Lx3C49272216	ProperStrand	1	chr3	49273287	49273377	LINE	Lx6	L1	chr3Lx649273266	ProperStrand	1	1	-inf
chr17	39847636	39847653	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	46819395	46819518	Simple_repeat	(TAGA)n	Simple_repeat	chr1(TAGA)n46819408	NonProperStrand	1	1	-inf
chr7	29152981	29152997	protein_coding	Plekhg2	intron	ENSMUSG00000037552	ProperStrand	4	chr9	65201724	65201750	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-16.7526
chr2	161112746	161112771	LTR	MTEa	MaLR	chr2MTEa161112612	ProperStrand	2	chr2	161113224	161113317	pseudogene	Gm11448	.	ENSMUSG00000081151	ProperStrand	2	2	-inf
chr17	39845437	39845568	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr4	91542643	91542662	LINE	Lx4A	L1	chr4Lx4A91541959	NonProperStrand	1	1	-inf
chr11	95387606	95387715	LINE	L1M2	L1	chr11L1M295387295	ProperStrand	1	chr17	39846955	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	68906787	68906887	SINE	B1_Mur2	Alu	chr11B1_Mur268906773	NonProperStrand	4	chr11	68906675	68906765	SINE	PB1D9	Alu	chr11PB1D968906630	ProperStrand	4	4	-inf
chr4	62611168	62611268	LTR	MTC-int	MaLR	chr4MTC-int62611001	NonProperStrand	4	chr13	114819440	114819457	protein_coding	Arl15	intron	ENSMUSG00000042348	NonProperStrand	11	2	-inf
chr14	21402054	21402082	protein_coding-noncoding	Usp54	utr3	ENSMUSG00000034235	NonProperStrand	1	chr14	21397999	21398099	protein_coding	Usp54	intron	ENSMUSG00000034235	NonProperStrand	7	1	-inf
chr19	4203316	4203416	SINE	B2_Mm2	B2	chr19B2_Mm24203317	ProperStrand	3	chr19	4203216	4203306	SINE	PB1D10	Alu	chr19PB1D104203207	ProperStrand	3	3	-inf
chr15	53220191	53220225	LINE	Lx7	L1	chr15Lx753219884	ProperStrand	1	chr15	53222333	53222401	LTR	BGLII_B	ERVK	chr15BGLII_B53222195	NonProperStrand	1	1	-inf
chr15	44376500	44376604	protein_coding	Pkhd1l1	intron	ENSMUSG00000038725	NonProperStrand	20	chr11	120346774	120346815	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	1	-13.4589
chr4	155184192	155184215	SINE	B1_Mus1	Alu	chr4B1_Mus1155184137	ProperStrand	1	chr4	155187246	155187334	protein_coding	Ccnl2	intron	ENSMUSG00000029068	NonProperStrand	19	1	-inf
chr17	39846411	39846519	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	49588251	49588269	protein_coding	Kif5c	exon	ENSMUSG00000026764	NonProperStrand	5	1	-3.1907
chr6	4002936	4003036	DNA	RCHARR1	MER1_type	chr6RCHARR14002844	NonProperStrand	1	chr14	23468663	23468753	protein_coding	1700112E06Rik	intron	ENSMUSG00000063458	ProperStrand	19	1	-inf
chr7	112886371	112886471	protein_coding	Ilk	intron	ENSMUSG00000030890	NonProperStrand	1	chr7	112768167	112768257	protein_coding	Trim3	intron	ENSMUSG00000036989	NonProperStrand	139	1	-inf
chr14	20177750	20177803	LTR	MuRRS-int	ERV1	chr14MuRRS-int20177703	ProperStrand	2	chr14	20178094	20178147	LTR	MuRRS-int	ERV1	chr14MuRRS-int20177903	NonProperStrand	13	1	-inf
chr5	146260998	146261023	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	77082509	77082630	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	1	-3.3975
chr19	32818872	32818968	SINE	PB1	Alu	chr19PB132818877	NonProperStrand	1	chr19	32818751	32818794	SINE	RSINE1	B4	chr19RSINE132818736	NonProperStrand	1	1	-inf
chr17	39848099	39848120	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	22709233	22709262	pseudogene	Gm12057	.	ENSMUSG00000084081	NonProperStrand	4	1	-6.6701
chr6	51199112	51199212	LINE	Lx7	L1	chr6Lx751199082	ProperStrand	1	chr6	51199521	51199612	LINE	Lx7	L1	chr6Lx751199302	ProperStrand	1	1	-inf
chr3	87855384	87855412	protein_coding	Gpatch4	intron	ENSMUSG00000028069	NonProperStrand	5	chr1	72255081	72255195	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-16.5203
chr15	79707022	79707123	LTR	RLTR13D5	ERVK	chr15RLTR13D579706383	NonProperStrand	3	chr17	39847844	39847897	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39847877	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	83427236	83427326	LTR	RMER20B	ERVK	chr8RMER20B83426985	ProperStrand	1	1	-inf
chr2	4608173	4608273	LINE	L1MC2	L1	chr2L1MC24608073	NonProperStrand	1	chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	165995854	165995918	protein_coding	Sell	intron	ENSMUSG00000026581	NonProperStrand	23	chr1	87666228	87666287	protein_coding	A630001G21Rik	intron	ENSMUSG00000052760	ProperStrand	4	1	-20.8085
chr5	146260998	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	29455258	29455417	protein_coding	Kcp	intron	ENSMUSG00000059022	NonProperStrand	14	1	-7.9707
chr14	120389833	120389933	LINE	L1_Mus3	L1	chr14L1_Mus3120389822	ProperStrand	9	chr14	120389689	120389779	LTR	RMER19A	ERVK	chr14RMER19A120389518	NonProperStrand	2	2	-inf
chr18	10500073	10500163	protein_coding-noncoding	Greb1l	utr5	ENSMUSG00000042942	NonProperStrand	1	chr18	10499707	10499807	protein_coding	Greb1l	intron	ENSMUSG00000042942	NonProperStrand	5	1	-inf
chr4	91244029	91244090	SINE	MIRc	MIR	chr4MIRc91243915	NonProperStrand	1	chr9	123461802	123461848	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	29127852	29127942	lincRNA	9530036O11Rik	intron	ENSMUSG00000086663	NonProperStrand	35	chr5	29098840	29098940	lincRNA	9530036O11Rik	intron	ENSMUSG00000086663	ProperStrand	16	1	-15.8121
chr9	118674951	118674985	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr2	104788268	104788349	protein_coding	Ccdc73	intron	ENSMUSG00000045106	NonProperStrand	61	1	-5.9383
chr10	78052010	78052055	protein_coding	Syde1	exon	ENSMUSG00000032714	NonProperStrand	32	chr1	72711720	72711745	protein_coding	Ankar	exon	ENSMUSG00000039342	NonProperStrand	61	1	-13.2598
chr1	187337460	187337550	Simple_repeat	(TCTA)n	Simple_repeat	chr1(TCTA)n187337470	ProperStrand	2	chr1	187337642	187337742	Simple_repeat	(TCTA)n	Simple_repeat	chr1(TCTA)n187337619	ProperStrand	2	2	-inf
chr17	39846638	39846679	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	100837937	100837988	LTR	MTA_Mm	MaLR	chr7MTA_Mm100837903	ProperStrand	1	1	-inf
chr10	4383912	4384006	LINE	L1Md_F2	L1	chr10L1Md_F24382964	ProperStrand	9	chr17	39847181	39847229	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.1539
chr14	85124868	85124958	LINE	Lx5	L1	chr14Lx585123858	NonProperStrand	1	chr14	85125118	85125218	LINE	Lx5	L1	chr14Lx585124887	NonProperStrand	1	1	-inf
chr13	13994276	13994376	LINE	L1Md_F	L1	chr13L1Md_F13988926	ProperStrand	3	chr13	13994735	13994825	LINE	L1VL1	L1	chr13L1VL113994571	ProperStrand	2	2	-inf
chr16	30958402	31004138	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	chr16	30969541	30973523	sense_intronic	Gm15742	.	ENSMUSG00000087605	ProperStrand	35	10	-inf
chr15	77163649	77163687	DNA	Charlie1a	MER1_type	chr15Charlie1a77163604	NonProperStrand	1	chr15	77163533	77163583	SINE	B2_Mm1a	B2	chr15B2_Mm1a77163411	NonProperStrand	1	1	-inf
chr19	3341982	3342060	protein_coding	Cpt1a	intron	ENSMUSG00000024900	ProperStrand	91	chr6	33654782	33654828	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-5.9909
chr2	151785512	151785612	SINE	B1_Mus2	Alu	chr2B1_Mus2151785534	ProperStrand	1	chr2	151785303	151785393	SINE	B4A	B4	chr2B4A151785301	ProperStrand	1	1	-inf
chr10	40258556	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chrX	134605732	134605752	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-3.6014
chr14	13957601	13957687	LINE	Lx7	L1	chr14Lx713956685	NonProperStrand	1	chr17	39847284	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr9	8169529	8169619	LINE	L1Md_F2	L1	chr9L1Md_F28167726	ProperStrand	1	chrX	19778543	19778643	protein_coding	Slc9a7	intron	ENSMUSG00000037341	ProperStrand	1	1	-inf
chr7	105862245	105862301	protein_coding	Prkrir	intron	ENSMUSG00000030753	NonProperStrand	4	chr10	80692459	80692525	protein_coding	Atcay	intron	ENSMUSG00000034958	ProperStrand	37	1	-18.9252
chr18	67886977	67887077	SINE	B1_Mus1	Alu	chr18B1_Mus167887003	ProperStrand	1	chr18	67886881	67886971	SINE	B1_Mus2	Alu	chr18B1_Mus267886868	NonProperStrand	1	1	-inf
chr12	63414340	63414440	LINE	L1Md_T	L1	chr12L1Md_T63414205	ProperStrand	2	chr7	103550783	103550873	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-19.2365
chr2	153764491	153764529	protein_coding	Bpifb4	intron	ENSMUSG00000074665	ProperStrand	13	chr2	28889382	28889423	protein_coding	1700101E01Rik	intron	ENSMUSG00000079502	NonProperStrand	122	1	-13.7172
chr5	124345868	124345887	LTR	RMER4B	ERVK	chr5RMER4B124345872	NonProperStrand	3	chr8	109172462	109172539	protein_coding	Cdh1	intron	ENSMUSG00000000303	ProperStrand	54	1	-18.4138
chr1	181492549	181492649	protein_coding	Cnst	intron	ENSMUSG00000038949	NonProperStrand	2	chr8	3390024	3390114	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	NonProperStrand	12	1	-inf
chr4	117119524	117119624	antisense	Gm12828	.	ENSMUSG00000086876	ProperStrand	2	chr11	116686530	116686618	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	93	2	-inf
chr11	40684774	40684790	DNA	URR1A	MER1_type	chr11URR1A40684729	ProperStrand	1	chr17	65800474	65800596	protein_coding	Tmem232	intron	ENSMUSG00000045036	NonProperStrand	58	1	-inf
chr3	119379281	119379300	LINE	L1_Mus3	L1	chr3L1_Mus3119377048	NonProperStrand	4	chr17	39846746	39846775	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr15	14655269	14655288	LINE	L1Md_A	L1	chr15L1Md_A14651855	ProperStrand	1	chr17	39847736	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846469	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	18225044	18225164	SINE	B1_Mus1	Alu	chr12B1_Mus118225053	ProperStrand	1	1	-inf
chr6	31144192	31144309	protein_coding	AB041803	intron	ENSMUSG00000044471	ProperStrand	114	chr6	145389026	145389044	protein_coding	Ifltd1	intron	ENSMUSG00000054966	NonProperStrand	5	1	-15.9063
chr17	39847174	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	151050110	151050220	LTR	MYSERV6-int	ERVK	chrXMYSERV6-int151049743	ProperStrand	3	1	-5.4882
chr1	100964387	100964404	LTR	MT-int	MaLR	chr1MT-int100964277	ProperStrand	1	chr13	29657551	29657616	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	1	-inf
chr15	75867047	75867147	Low_complexity	GA-rich	Low_complexity	chr15GA-rich75867052	ProperStrand	2	chr15	75866955	75867045	snRNA	ENSMUSG00000089396_U1	.	ENSMUSG00000089396	ProperStrand	2	2	-inf
chr13	29338034	29338071	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr7	109520561	109521608	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-5.7986
chr10	40258625	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	150937688	150939895	LTR	IAPEz-int	ERVK	chr2IAPEz-int150937677	NonProperStrand	1	1	-inf
chr5	113333342	113333442	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int113332930	ProperStrand	11	chr5	113333531	113333621	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int113333356	ProperStrand	10	1	-19.4454
chr17	56180827	56180927	protein_coding	Chaf1a	intron	ENSMUSG00000002835	NonProperStrand	23	chr3	88555859	88555950	protein_coding	Syt11	utr5	ENSMUSG00000068923	NonProperStrand	69	4	-inf
chr5	121956766	121956856	protein_coding	Tmem116	intron	ENSMUSG00000029452	NonProperStrand	41	chr8	25841935	25842035	protein_coding	Adam5	intron	ENSMUSG00000031554	ProperStrand	56	1	-12.9307
chr13	100699213	100699230	SINE	RSINE1	B4	chr13RSINE1100699089	NonProperStrand	4	chr11	12259046	12259096	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-14.7289
chr10	70649354	70649444	LTR	MTEb-int	MaLR	chr10MTEb-int70649328	ProperStrand	1	chr10	70649097	70649197	LTR	ORR1E	MaLR	chr10ORR1E70649119	ProperStrand	1	1	-inf
chrX	99825128	99825146	protein_coding	Phka1	intron	ENSMUSG00000034055	ProperStrand	9	chr13	97190547	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.9531
chr5	41594290	41594380	DNA	Charlie1	MER1_type	chr5Charlie141594237	NonProperStrand	1	chr5	41594129	41594229	SINE	B1F	Alu	chr5B1F41594102	ProperStrand	1	1	-inf
chr5	146261174	146261198	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	80802743	80802761	protein_coding	Dmd	intron	ENSMUSG00000045103	ProperStrand	47	1	-5.5389
chr17	39846377	39846433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	34842874	34842920	Simple_repeat	(TAGA)n	Simple_repeat	chr19(TAGA)n34842880	NonProperStrand	1	1	-inf
chr1	6046577	6046667	LINE	Lx4A	L1	chr1Lx4A6046525	NonProperStrand	1	chr1	6046869	6046969	LTR	MTB_Mm	MaLR	chr1MTB_Mm6046794	ProperStrand	1	1	-inf
chr17	39846580	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	57112140	57112159	SINE	B4A	B4	chr12B4A57111957	NonProperStrand	5	1	-3.1907
chr9	123462079	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	43568324	43568396	protein_coding	Gpr116	intron	ENSMUSG00000056492	ProperStrand	6	1	-5.4370
chr17	39847521	39847578	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	52746979	52747053	LTR	ETnERV3-int	ERVK	chrXETnERV3-int52746187	NonProperStrand	1	1	-inf
chr12	86506503	86514314	protein_coding	Pgf	intron	ENSMUSG00000004791	NonProperStrand	195	chr12	86488559	86488610	protein_coding	Rps6kl1	intron	ENSMUSG00000019235	NonProperStrand	221	2	-11.3451
chr17	39847551	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	5155187	5155225	LTR	ERVL-E-int	ERVL	chr2ERVL-E-int5155175	ProperStrand	1	1	-inf
chr17	74831098	74831154	protein_coding	Nlrc4	intron	ENSMUSG00000039193	NonProperStrand	8	chr5	107904750	107904822	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-14.5964
chr4	89283093	89283189	LINE	L1Md_T	L1	chr4L1Md_T89278590	ProperStrand	3	chr17	39846710	39846749	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr6	89317821	89317837	LINE	L1MDa	L1	chr6L1MDa89317724	ProperStrand	3	chr17	39847026	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr11	77062152	77062258	protein_coding	Ssh2	intron	ENSMUSG00000037926	NonProperStrand	17	1	-9.1112
chr7	118402665	118402765	LTR	ORR1B1	MaLR	chr7ORR1B1118402429	ProperStrand	2	chr7	118402824	118402914	SINE	B1F1	Alu	chr7B1F1118402784	ProperStrand	2	2	-inf
chr8	55920098	55920188	LINE	L1_Rod	L1	chr8L1_Rod55920032	ProperStrand	1	chr8	55919589	55919689	LTR	RMER15	ERVL	chr8RMER1555919481	ProperStrand	1	1	-inf
chr9	123461931	123461954	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chrX	49493465	49493482	protein_coding	Gpc4	intron	ENSMUSG00000031119	ProperStrand	4	1	-6.3300
chr13	33917976	33918058	LTR	ORR1A3-int	MaLR	chr13ORR1A3-int33917695	NonProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr17	39847207	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	3264332	3264351	protein_coding	Ighmbp2	intron	ENSMUSG00000024831	NonProperStrand	3	1	-5.4882
chr4	6423339	6423429	LTR	RMER3D-int	ERVK	chr4RMER3D-int6422881	NonProperStrand	4	chr4	6420076	6421092	Simple_repeat	(TC)n	Simple_repeat	chr4(TC)n6420049	NonProperStrand	4	4	-inf
chr11	80010629	80010658	protein_coding	Rnf135	intron	ENSMUSG00000020707	ProperStrand	16	chr4	117116402	117116472	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-11.9289
chr17	24597075	24597152	LTR	MTA_Mm-int	MaLR	chr17MTA_Mm-int24597084	NonProperStrand	2	chr17	24601894	24601961	SINE	ID_B1	B4	chr17ID_B124601859	NonProperStrand	2	2	-inf
chr1	41075253	41075343	LINE	L1MCa	L1	chr1L1MCa41075060	NonProperStrand	1	chr1	41075586	41075686	LINE	Lx8	L1	chr1Lx841075469	NonProperStrand	1	1	-inf
chr5	71643736	71643836	LINE	L1_Mus2	L1	chr5L1_Mus271643648	ProperStrand	1	chr5	71644047	71644137	LINE	L1_Rod	L1	chr5L1_Rod71644068	NonProperStrand	1	1	-inf
chr5	34352407	34352453	protein_coding	Poln	intron	ENSMUSG00000045102	NonProperStrand	133	chr9	24487379	24487453	protein_coding	Dpy19l2	intron	ENSMUSG00000085576	ProperStrand	89	1	-9.6327
chr17	39847128	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	93107480	93107549	protein_coding	Msh3	intron	ENSMUSG00000014850	NonProperStrand	7	1	-3.6430
chr5	114852385	114852409	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr9	99513722	99513820	protein_coding	A4gnt	intron	ENSMUSG00000037953	NonProperStrand	8	1	-13.4426
chr17	26254141	26254189	protein_coding	Tmem8	intron	ENSMUSG00000024180	ProperStrand	23	chr11	35951313	35951351	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-10.3185
chr13	98842459	98842517	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr16	50416241	50416285	protein_coding	Bbx	intron	ENSMUSG00000022641	ProperStrand	76	1	-9.8467
chr7	141451055	141451329	LINE	Lx2	L1	chr7Lx2141451081	ProperStrand	221	chr7	141448741	141451088	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	188	152	-inf
chr17	56048738	56048838	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int56048700	ProperStrand	1	chr17	56048561	56048651	SINE	B2_Mm2	B2	chr17B2_Mm256048524	ProperStrand	1	1	-inf
chr12	76907003	76910240	LTR	MTD	MaLR	chr12MTD76907018	NonProperStrand	1	chr17	39847804	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	115184073	115184095	protein_coding-noncoding	Git2	utr3	ENSMUSG00000041890	ProperStrand	2	chr5	115184186	115184218	protein_coding	Git2	intron	ENSMUSG00000041890	ProperStrand	40	1	-20.0320
chr14	42610021	42610078	LINE	Lx2	L1	chr14Lx242608125	NonProperStrand	1	chr5	145118510	145118557	protein_coding	Bri3	intron	ENSMUSG00000047843	ProperStrand	118	1	-inf
chr7	55989777	55989877	LINE	L1Md_T	L1	chr7L1Md_T55989490	NonProperStrand	1	chr7	55989901	55989993	LINE	L1_Mur2	L1	chr7L1_Mur255989888	NonProperStrand	1	1	-inf
chr16	20662650	20662722	protein_coding	Psmd2	intron	ENSMUSG00000006998	ProperStrand	34	chr9	65694169	65694215	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	1	-12.4934
chr11	16754830	16754850	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	chr2	32285422	32285451	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	1	-15.0590
chr19	7483103	7483193	SINE	B1_Mus2	Alu	chr19B1_Mus27483066	NonProperStrand	2	chr19	7435130	7483031	SINE	B3	B2	chr19B37438063	NonProperStrand	2	2	-inf
chr7	92774823	92774893	LINE	L1Md_F2	L1	chr7L1Md_F292774617	NonProperStrand	1	chr7	92772087	92772167	protein_coding	Vmn2r71	intron	ENSMUSG00000091205	ProperStrand	5	1	-inf
chr11	50246043	50246070	SINE	B1_Mur1	Alu	chr11B1_Mur150246024	ProperStrand	1	chr11	50248719	50248805	SINE	B1_Mus2	Alu	chr11B1_Mus250248675	ProperStrand	1	1	-inf
chr6	105454905	105454995	LINE	L1Md_A	L1	chr6L1Md_A105454798	NonProperStrand	1	chr6	105454703	105454803	LTR	MTC-int	MaLR	chr6MTC-int105454675	NonProperStrand	1	1	-inf
chr17	39848099	39848158	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	19132392	19132455	protein_coding	Pde7a	intron	ENSMUSG00000069094	ProperStrand	17	1	-3.6758
chr3	20213268	20213368	SINE	B2_Mm2	B2	chr3B2_Mm220213135	NonProperStrand	1	chr3	20213414	20213504	protein_coding	Agtr1b	utr3	ENSMUSG00000054988	ProperStrand	2	1	-inf
chr10	77993432	77995249	LINE	Lx4B	L1	chr10Lx4B77992672	ProperStrand	21	chr7	132998830	132998904	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	1	-10.9776
chr2	121663394	121663484	LTR	ORR1B2	MaLR	chr2ORR1B2121663305	NonProperStrand	2	chr16	10842087	10842187	protein_coding	A630055G03Rik	utr3	ENSMUSG00000037991	ProperStrand	46	2	-inf
chr7	34211290	34211380	LINE	L1M3	L1	chr7L1M334211300	NonProperStrand	2	chr7	34211202	34211302	LINE	L1_Mus3	L1	chr7L1_Mus334210921	NonProperStrand	2	1	-19.8939
chr17	39846883	39847011	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	79737757	79737780	protein_coding	Fam198b	intron	ENSMUSG00000027955	NonProperStrand	1	1	-inf
chr1	10719731	10719748	LINE	L1Md_F2	L1	chr1L1Md_F210719037	NonProperStrand	1	chr4	149120027	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr14	59438169	59438259	SINE	B3A	B2	chr14B3A59438170	ProperStrand	1	chr14	56225354	56225454	protein_coding-noncoding	Irf9	utr5	ENSMUSG00000002325	ProperStrand	1	1	-inf
chr11	106247779	106247803	protein_coding	Icam2	intron	ENSMUSG00000001029	NonProperStrand	12	chr9	123461890	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr14	7920245	7920693	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	chr14	7920363	7920554	protein_coding	Gm3696	exon	ENSMUSG00000092167	NonProperStrand	3	3	-inf
chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	chr12	22155402	22155535	pseudogene	Gm4425	.	ENSMUSG00000092465	ProperStrand	2	1	-19.7188
chrX	97103178	97103251	LTR	IAPEz-int	ERVK	chrXIAPEz-int97097251	ProperStrand	1	chr9	123461931	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	89133006	89133057	protein_coding	Eif4e2	intron	ENSMUSG00000026254	ProperStrand	80	chr13	44869594	44869672	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.9477
chr7	127273807	127273866	protein_coding	Zp2	intron	ENSMUSG00000030911	ProperStrand	28	chr14	79572240	79572289	protein_coding	1300010F03Rik	intron	ENSMUSG00000058997	ProperStrand	49	1	-13.9748
chr9	20516242	20516289	protein_coding	Olfm2	intron	ENSMUSG00000032172	ProperStrand	64	chr1	132492199	132492236	snRNA	ENSMUSG00000064395_U6	.	ENSMUSG00000064395	NonProperStrand	1	1	-inf
chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr3	88580994	88588037	pseudogene	5830417I10Rik	.	ENSMUSG00000078684	ProperStrand	52	2	-8.8588
chr1	69616142	69616213	protein_coding	Ikzf2	intron	ENSMUSG00000025997	ProperStrand	19	chr4	119281833	119281903	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	1	-12.9483
chr17	39846788	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	35005103	35005174	protein_coding	Gpi1	intron	ENSMUSG00000036427	ProperStrand	1	1	-inf
chr8	33875297	33875340	Simple_repeat	(CAGAGA)n	Simple_repeat	chr8(CAGAGA)n33875287	NonProperStrand	1	chr5	137043070	137043123	protein_coding	Cux1	utr5	ENSMUSG00000029705	ProperStrand	30	1	-inf
chr17	39847521	39847564	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	62194242	62194357	protein_coding	4933430I17Rik	intron	ENSMUSG00000058046	NonProperStrand	5	1	-3.2379
chr9	114800274	114800374	SINE	B4A	B4	chr9B4A114800298	ProperStrand	1	chr9	114800104	114800194	SINE	RSINE1	B4	chr9RSINE1114800126	ProperStrand	1	1	-inf
chr15	78405339	78405362	LINE	L1M5	L1	chr15L1M578405125	ProperStrand	1	chr15	78399710	78399824	protein_coding	Rac2	intron	ENSMUSG00000033220	ProperStrand	4	1	-inf
chr2	25434383	25434502	lincRNA	Gm17550	exon	ENSMUSG00000092018	ProperStrand	8	chr6	23073796	23073818	protein_coding	Aass	intron	ENSMUSG00000029695	ProperStrand	5	1	-22.1864
chr8	61652918	61653018	LINE	L1_Mus3	L1	chr8L1_Mus361651094	NonProperStrand	1	chr8	73842863	73842953	protein_coding	Myo9b	intron	ENSMUSG00000004677	ProperStrand	5	1	-inf
chr17	39846889	39846933	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	68704333	68704353	Low_complexity	AT_rich	Low_complexity	chr5AT_rich68704316	NonProperStrand	1	1	-inf
chrX	36797797	36797871	LINE	L1Md_F2	L1	chrXL1Md_F236792266	NonProperStrand	41	chr7	16564424	16564498	protein_coding	Gltscr1	exon	ENSMUSG00000070808	ProperStrand	25	1	-14.5734
chr9	115146578	115146643	SINE	B1_Mus2	Alu	chr9B1_Mus2115146594	NonProperStrand	1	chr9	115112745	115112801	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	1	-inf
chr19	9893323	9893423	LINE	L1Md_F2	L1	chr19L1Md_F29892644	NonProperStrand	16	chr13	112578188	112578278	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-6.8081
chr17	39843711	39843787	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	47606887	47606907	protein_coding	AI661453	utr3	ENSMUSG00000034382	NonProperStrand	23	1	-4.7802
chr9	57735220	57735311	LINE	L1_Mus1	L1	chr9L1_Mus157735085	ProperStrand	1	chr11	97329599	97329633	protein_coding	Arhgap23	intron	ENSMUSG00000049807	NonProperStrand	18	1	-inf
chr19	36230368	36230468	LINE	L1_Mur3	L1	chr19L1_Mur336229780	ProperStrand	2	chr19	36230705	36230795	SINE	B3A	B2	chr19B3A36230601	ProperStrand	2	2	-inf
chr7	74352493	74352512	lincRNA	1700112J16Rik	intron	ENSMUSG00000086357	NonProperStrand	2	chr15	80080366	80080402	protein_coding	Smcr7l	exon	ENSMUSG00000022412	NonProperStrand	429	1	-15.5409
chr10	128132764	128132816	protein_coding	Rab5b	intron	ENSMUSG00000000711	NonProperStrand	89	chr2	20674475	20674566	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	2	-12.5536
chr13	111783742	111783832	LTR	ORR1D1	MaLR	chr13ORR1D1111783758	NonProperStrand	1	chr13	111783679	111783779	SINE	B4A	B4	chr13B4A111783570	NonProperStrand	1	1	-inf
chr2	156172838	156172950	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	NonProperStrand	55	chr2	156172947	156173039	pseudogene	Gm14253	.	ENSMUSG00000082321	ProperStrand	4	4	-inf
chr15	77599134	77599224	protein_coding	Myh9	intron	ENSMUSG00000022443	ProperStrand	2	chr15	77096662	77096762	protein_coding	Rbfox2	intron	ENSMUSG00000033565	NonProperStrand	14	1	-19.5799
chr9	32238333	32238423	protein_coding	Fli1	intron	ENSMUSG00000016087	NonProperStrand	57	chr16	90971572	90973910	protein_coding	Synj1	intron	ENSMUSG00000022973	NonProperStrand	3	1	-18.4465
chr17	39847636	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	69825317	69825417	protein_coding	Acadvl	intron	ENSMUSG00000018574	ProperStrand	5	1	-3.2379
chr15	99250057	99250147	SINE	B1_Mus1	Alu	chr15B1_Mus199250029	ProperStrand	5	chr15	99249900	99250000	SINE	PB1D7	Alu	chr15PB1D799249876	ProperStrand	5	5	-inf
chr17	39847659	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	3415981	3416064	protein_coding	Selm	intron	ENSMUSG00000075702	NonProperStrand	1	1	-inf
chr5	114851974	114852051	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr2	5379268	5379374	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	24	-20.9354
chr16	20454045	20454135	LTR	RLTR17	ERVK	chr16RLTR1720454054	ProperStrand	1	chr16	20453932	20454032	LTR	RMER12	ERVK	chr16RMER1220453360	NonProperStrand	2	1	-inf
chr17	39846462	39846529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	88826224	88826287	SINE	B1_Mus2	Alu	chr10B1_Mus288826161	NonProperStrand	1	1	-inf
chr10	79035178	79035223	LINE	Lx3C	L1	chr10Lx3C79035020	NonProperStrand	1	chr17	39847736	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847762	39847820	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	100481104	100481153	SINE	B3A	B2	chr9B3A100481118	ProperStrand	1	1	-inf
chr5	143904280	143904380	LTR	MT2B	ERVL	chr5MT2B143904276	NonProperStrand	1	chr5	143904376	143904466	SINE	B1_Mur3	Alu	chr5B1_Mur3143904376	ProperStrand	1	1	-inf
chr11	49798579	49798662	LINE	L1M4b	L1	chr11L1M4b49798556	ProperStrand	2	chr11	109011676	109011718	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	1	-13.5340
chr18	77157474	77157506	LINE	Lx6	L1	chr18Lx677157294	ProperStrand	4	chr18	77152959	77153044	LINE	Lx	L1	chr18Lx77150241	NonProperStrand	4	1	-inf
chr9	37500183	37500202	LTR	MLT1A1	MaLR	chr9MLT1A137500081	ProperStrand	3	chr9	123461822	123461945	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr2	131331978	131332073	protein_coding	Smox	intron	ENSMUSG00000027333	NonProperStrand	7	chrX	48361675	48361706	protein_coding	Rap2c	intron	ENSMUSG00000050029	NonProperStrand	18	1	-18.9495
chr11	97428135	97428235	antisense	Gm11612	.	ENSMUSG00000086394	ProperStrand	8	chr11	97427974	97428064	protein_coding	Srcin1	intron	ENSMUSG00000038453	NonProperStrand	68	3	-21.2560
chr12	109565086	109565105	protein_coding	Hhipl1	intron	ENSMUSG00000021260	ProperStrand	179	chr4	104495199	104495275	protein_coding	C8a	intron	ENSMUSG00000035031	NonProperStrand	68	1	-9.5786
chr17	39846104	39846173	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	127272884	127272943	protein_coding	Fam89a	intron	ENSMUSG00000043068	NonProperStrand	1	1	-inf
chr3	63912674	63912764	LINE	L1Md_F2	L1	chr3L1Md_F263912640	NonProperStrand	1	chr3	63912910	63913010	LINE	L1Md_F2	L1	chr3L1Md_F263912890	ProperStrand	1	1	-inf
chr1	34049557	34049597	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr8	60951427	60951477	protein_coding	Galntl6	intron	ENSMUSG00000061864	ProperStrand	140	1	-5.1256
chr18	19039209	19039299	LINE	Lx3A	L1	chr18Lx3A19037376	NonProperStrand	1	chr7	103550697	103550797	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr9	110281305	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr2	24756787	24756927	protein_coding	Ehmt1	intron	ENSMUSG00000036893	ProperStrand	27	2	-14.5586
chr9	123462028	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	133702465	133708935	protein_coding	Eif3c	intron	ENSMUSG00000030738	ProperStrand	8	1	-4.8360
chr7	24970438	24970538	LTR	MYSERV6-int	ERVK	chr7MYSERV6-int24970011	NonProperStrand	1	chr7	24970542	24970632	SINE	B2_Mm2	B2	chr7B2_Mm224970564	NonProperStrand	1	1	-inf
chr17	39847531	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	106433613	106433697	Other	RMER1C	Other	chr9RMER1C106433127	NonProperStrand	2	1	-5.4040
chr14	34024079	34024095	LINE	L1M2	L1	chr14L1M234023894	NonProperStrand	1	chr2	22744844	22744925	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-inf
chr3	90507553	90509241	LINE	L1_Rod	L1	chr3L1_Rod90507354	ProperStrand	7	chr3	90509232	90509350	LINE	L1_Rod	L1	chr3L1_Rod90508841	ProperStrand	12	6	-inf
chr5	33512535	33512621	DNA	Charlie25	MER1_type	chr5Charlie2533512493	ProperStrand	21	chr8	111664470	111664519	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	ProperStrand	53	1	-14.4013
chr17	39846378	39846406	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	87990467	87990522	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int87990155	ProperStrand	5	1	-3.1907
chr6	76409883	76409973	LTR	MTEb	MaLR	chr6MTEb76409746	NonProperStrand	1	chr6	76409598	76409698	SINE	B1_Mus1	Alu	chr6B1_Mus176409578	ProperStrand	1	1	-inf
chr14	105126721	105126811	LINE	L1Md_F2	L1	chr14L1Md_F2105126717	ProperStrand	3	chr14	105126586	105126686	LTR	ORR1B2	MaLR	chr14ORR1B2105126412	NonProperStrand	3	3	-inf
chr17	39847276	39847341	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	120037992	120038088	LTR	IAPLTR2a	ERVK	chr6IAPLTR2a120037933	ProperStrand	8	2	-5.9593
chr7	19050606	19050696	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int19050577	NonProperStrand	2	chr7	19050712	19050812	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int19050701	NonProperStrand	2	2	-inf
chr5	88584101	88584166	LINE	L1_Mur3	L1	chr5L1_Mur388583674	ProperStrand	7	chr9	118674951	118674986	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.3618
chr10	117060807	117061362	LINE	L2	L2	chr10L2117061294	NonProperStrand	9	chr10	117060697	117060799	SINE	B1_Mus1	Alu	chr10B1_Mus1117060722	ProperStrand	6	6	-inf
chr11	70648028	70648046	LTR	ORR1D1	MaLR	chr11ORR1D170647963	ProperStrand	2	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr1	134310012	134310076	SINE	ID_B1	B4	chr1ID_B1134309926	NonProperStrand	1	chr11	54981669	54983302	protein_coding-noncoding	Slc36a2	utr3	ENSMUSG00000020264	ProperStrand	1	1	-inf
chr5	110477604	110477653	SINE	B2_Mm1t	B2	chr5B2_Mm1t110477505	ProperStrand	1	chr2	5959775	5959853	protein_coding	Upf2	intron	ENSMUSG00000043241	ProperStrand	9	1	-inf
chr3	41569053	41569088	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr6	127767631	127767676	LINE	L2	L2	chr6L2127767631	NonProperStrand	1	1	-inf
chr13	112255728	112255828	protein_coding	Gpbp1	intron	ENSMUSG00000032745	NonProperStrand	2	chr1	74739358	74739448	protein_coding	Ttll4	intron	ENSMUSG00000033257	NonProperStrand	3	1	-20.8297
chr10	79048590	79048641	protein_coding	Theg	intron	ENSMUSG00000020317	ProperStrand	12	chr9	123461848	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr8	83723593	83723683	LTR	MMETn-int	ERVK	chr8MMETn-int83722276	NonProperStrand	20	chr9	95939250	95939266	protein_coding	Xrn1	intron	ENSMUSG00000032410	NonProperStrand	2	1	-20.0050
chr17	39847687	39848051	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	93453581	93496601	protein_coding	Vezt	intron	ENSMUSG00000036099	NonProperStrand	24	4	-3.9273
chr8	47641476	47641576	protein_coding-noncoding	Mlf1ip	utr5	ENSMUSG00000031629	ProperStrand	1	chr8	47641109	47641199	protein_coding	Mlf1ip	intron	ENSMUSG00000031629	ProperStrand	2	1	-inf
chr8	84674851	84675077	LINE	L1MA6	L1	chr8L1MA684674546	ProperStrand	5	chr8	84673254	84674814	LINE	L1Md_F2	L1	chr8L1Md_F284672902	ProperStrand	2	2	-inf
chr6	34906521	34906568	protein_coding	2010107G12Rik	intron	ENSMUSG00000029847	ProperStrand	21	chr13	16987003	16987031	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	1	-14.3632
chr13	48724670	48724689	LTR	ORR1B1-int	MaLR	chr13ORR1B1-int48724572	NonProperStrand	1	chr17	39845972	39846030	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr14	18478277	18478403	LTR	ORR1A0-int	MaLR	chr14ORR1A0-int18478144	NonProperStrand	1	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-inf
chr17	39846931	39846996	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	116065276	116065302	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n116065277	ProperStrand	1	1	-inf
chr7	139996012	139996079	protein_coding	Fam53b	intron	ENSMUSG00000030956	ProperStrand	12	chr7	127217644	127217716	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	147	1	-13.5088
chr11	49801752	49801852	SINE	B3	B2	chr11B349801766	NonProperStrand	4	chr11	49801606	49801696	SINE	RSINE1	B4	chr11RSINE149801516	NonProperStrand	2	1	-20.9262
chr16	35045972	35046072	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	chr9	22665384	22665474	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	126	2	-13.2838
chr5	122500282	122501581	antisense	Gm15637	.	ENSMUSG00000087386	NonProperStrand	35	chr5	122489364	122499304	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	2	-17.8605
chr17	39846802	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	51835886	51840807	SINE	B1_Mm	Alu	chr15B1_Mm51835905	NonProperStrand	1	1	-inf
chr14	86996314	86996356	LTR	IAPEz-int	ERVK	chr14IAPEz-int86990666	NonProperStrand	3	chr4	83329317	83329372	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-17.1058
chr5	33506836	33506937	LINE	Lx8	L1	chr5Lx833506547	NonProperStrand	23	chr5	33506952	33507070	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n33506976	NonProperStrand	9	3	-inf
chr15	38021592	38021672	LINE	L1_Mur2	L1	chr15L1_Mur238021501	ProperStrand	1	chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	84846217	84846316	LINE	L1Md_F2	L1	chr8L1Md_F284845460	NonProperStrand	20	chr8	65028742	65028772	LINE	L1_Mur2	L1	chr8L1_Mur265028167	ProperStrand	3	3	-inf
chr16	8695077	8695137	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr5	125177805	125177875	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	301	1	-5.4758
chr9	17987797	17987828	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr12	78350926	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-5.0414
chr17	39846588	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	47311100	47319416	SINE	B4A	B4	chr14B4A47310888	ProperStrand	2	1	-5.3533
chr6	33019106	33019203	LTR	MTA_Mm	MaLR	chr6MTA_Mm33018998	NonProperStrand	1	chr9	123461935	123461954	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847444	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	62749795	62749893	protein_coding	Pias1	intron	ENSMUSG00000032405	NonProperStrand	3	1	-4.3512
chr17	39847456	39847593	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr6	3201427	3201545	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	5	3	-inf
chr4	45105289	45105353	LINE	Lx6	L1	chr4Lx645102752	ProperStrand	5	chr4	45105411	45105501	SINE	B1_Mus1	Alu	chr4B1_Mus145105367	NonProperStrand	1	1	-inf
chr17	80926997	80927087	protein_coding	Cdkl4	intron	ENSMUSG00000033966	NonProperStrand	6	chr4	35997531	35997631	protein_coding	Lingo2	intron	ENSMUSG00000045083	ProperStrand	25	1	-18.8476
chr9	99310370	99310414	protein_coding	Mras	intron	ENSMUSG00000032470	ProperStrand	17	chr8	70895856	70895890	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-13.1275
chr10	85124664	85124690	LTR	ORR1E	MaLR	chr10ORR1E85124577	ProperStrand	1	chr17	39847836	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	156893403	156893493	DNA	Tigger5	MER2_type	chr1Tigger5156893416	ProperStrand	1	chr1	156895736	156895836	LTR	MTE2a	MaLR	chr1MTE2a156895483	NonProperStrand	1	1	-inf
chr19	36892308	36892327	LINE	Lx8	L1	chr19Lx836892085	ProperStrand	2	chr4	117202570	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	1	-20.6107
chr9	31205246	31210626	protein_coding-noncoding	Nfrkb	utr5	ENSMUSG00000042185	NonProperStrand	3	chr9	31205283	31210889	protein_coding	Nfrkb	intron	ENSMUSG00000042185	NonProperStrand	30	2	-20.6592
chr14	75845654	75846254	LTR	MTB_Mm	MaLR	chr14MTB_Mm75846072	NonProperStrand	17	chr13	6593737	6593802	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	5	-20.4701
chr6	108282581	108282681	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr1	136920830	136920920	protein_coding	Lgr6	intron	ENSMUSG00000042793	ProperStrand	106	2	-11.7056
chr13	109911343	109911394	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr2	32177772	32177862	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	1	-5.3811
chr13	56463735	56464960	LTR	RMER6B	ERVK	chr13RMER6B56463474	ProperStrand	5	chr13	98887530	98887655	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	1	-15.4909
chrX	41860328	41860428	LINE	Lx3_Mus	L1	chrXLx3_Mus41860021	ProperStrand	1	chrX	41860631	41860721	LINE	Lx3_Mus	L1	chrXLx3_Mus41860522	ProperStrand	1	1	-inf
chr12	99183082	99183182	LINE	MusHAL1	L1	chr12MusHAL199182807	ProperStrand	1	chr15	10603721	10603811	protein_coding	Rai14	intron	ENSMUSG00000022246	NonProperStrand	12	1	-inf
chr5	132525634	132525689	protein_coding-noncoding	Auts2	utr3	ENSMUSG00000029673	ProperStrand	7	chr12	78350926	78350986	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-10.2853
chr17	39846479	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	24679797	24679889	SINE	B1_Mus2	Alu	chr17B1_Mus224679741	NonProperStrand	1	1	-inf
chr11	78271478	78271575	LTR	RMER5	ERV1	chr11RMER578271322	NonProperStrand	13	chr11	36851694	36851712	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-11.4929
chr3	95659285	95659321	protein_coding	Prpf3	utr5	ENSMUSG00000015748	NonProperStrand	78	chr19	10627209	10627581	protein_coding	Tmem216	intron	ENSMUSG00000024667	NonProperStrand	60	1	-11.4949
chr7	19453902	19454002	SINE	B1_Mus1	Alu	chr7B1_Mus119453849	NonProperStrand	4	chr7	19454095	19454185	SINE	B3A	B2	chr7B3A19454002	ProperStrand	4	4	-inf
chr11	109011733	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	115267320	115276704	LTR	ORR1B2	MaLR	chr9ORR1B2115267191	NonProperStrand	1	1	-inf
chr15	75900726	75901185	protein_coding	Puf60	intron	ENSMUSG00000002524	ProperStrand	31	chr15	75896856	75900727	protein_coding	Scrib	intron	ENSMUSG00000022568	ProperStrand	50	2	-inf
chr8	33852619	33854058	LINE	L1Md_A	L1	chr8L1Md_A33850474	ProperStrand	25	chr17	39846821	39846995	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	4	-3.6620
chr9	78367271	78367787	SINE	B1_Mm	Alu	chr9B1_Mm78367670	NonProperStrand	55	chr9	78367081	78367181	SINE	B1_Mus2	Alu	chr9B1_Mus278367013	NonProperStrand	13	2	-inf
chr18	53137900	53137990	LINE	L1MB7	L1	chr18L1MB753137885	NonProperStrand	1	chr18	53138308	53138408	LTR	MER110A	ERV1	chr18MER110A53138127	NonProperStrand	1	1	-inf
chr9	71485740	71485830	protein_coding	Cgnl1	intron	ENSMUSG00000032232	ProperStrand	38	chr17	24634400	24634501	protein_coding	Caskin1	intron	ENSMUSG00000033597	ProperStrand	20	1	-15.1882
chr5	116441287	116441334	protein_coding	Cit	intron	ENSMUSG00000029516	ProperStrand	37	chr5	34232231	34233349	protein_coding	Whsc1	intron	ENSMUSG00000057406	NonProperStrand	47	1	-13.4936
chr14	30571010	30571097	LTR	MLT1E3	MaLR	chr14MLT1E330570757	NonProperStrand	4	chr12	74299511	74299527	protein_coding	Mnat1	intron	ENSMUSG00000021103	ProperStrand	9	1	-inf
chr2	164149060	164149150	LINE	Lx6	L1	chr2Lx6164149038	ProperStrand	3	chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	25064132	25064232	protein_coding-noncoding	Mapk8ip3	utr3	ENSMUSG00000024163	NonProperStrand	9	chr17	25064041	25064131	protein_coding	Mapk8ip3	intron	ENSMUSG00000024163	NonProperStrand	44	1	-16.5665
chr2	121971772	121971896	protein_coding	Patl2	intron	ENSMUSG00000027233	NonProperStrand	13	chr7	5033165	5033186	protein_coding	Epn1	intron	ENSMUSG00000035203	ProperStrand	7	1	-19.7600
chr1	156617428	156617549	LINE	L1Md_F2	L1	chr1L1Md_F2156615712	NonProperStrand	3	chr17	39847520	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39847440	39847468	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	18595287	18595367	protein_coding	Mcph1	utr5	ENSMUSG00000039842	NonProperStrand	5	1	-3.2379
chr17	39846576	39846648	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	136216303	136216374	protein_coding	Tmem120a	intron	ENSMUSG00000039886	NonProperStrand	5	1	-3.1907
chr9	97107470	97107560	LINE	L1_Mur3	L1	chr9L1_Mur397107100	ProperStrand	1	chr17	39846453	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	98852479	98852569	SINE	B2_Mm2	B2	chr15B2_Mm298852497	NonProperStrand	2	chr15	98852336	98852436	SINE	ID_B1	B4	chr15ID_B198852316	NonProperStrand	2	2	-inf
chr9	84051487	84051525	LINE	L1_Mus1	L1	chr9L1_Mus184050883	NonProperStrand	1	chrX	74235870	74235942	LINE	L1Md_F2	L1	chrXL1Md_F274235532	NonProperStrand	8	1	-inf
chr11	60208699	60208814	LINE	Lx8	L1	chr11Lx860208639	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr15	59032653	59032753	LINE	L2b	L2	chr15L2b59032616	ProperStrand	3	chr15	59032767	59032857	LTR	ORR1D2	MaLR	chr15ORR1D259032742	NonProperStrand	5	3	-inf
chr14	107482710	107482726	LINE	Lx2	L1	chr14Lx2107482351	ProperStrand	1	chr15	47539994	47540119	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-inf
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr15	47539994	47540119	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-9.5056
chr5	132347444	132347578	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr15	55637952	55637969	protein_coding	Sntb1	intron	ENSMUSG00000060429	ProperStrand	29	1	-8.6665
chr9	21740714	21740814	SINE	B1_Mur4	Alu	chr9B1_Mur421740716	NonProperStrand	2	chr9	21740529	21740619	SINE	RSINE1	B4	chr9RSINE121740546	ProperStrand	3	2	-inf
chr5	146261275	146261303	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-7.9111
chr11	106141668	106141686	protein_coding	Tcam1	intron	ENSMUSG00000020712	NonProperStrand	2	chr9	47574637	47574717	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	1	-16.9302
chr9	110281287	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr11	48800428	48800453	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-4.8670
chr15	93298819	93298881	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	chr17	30474414	30474444	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-7.4138
chr17	39846594	39846706	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	158003404	158003422	protein_coding	Fam163a	intron	ENSMUSG00000015484	ProperStrand	4	1	-3.6552
chr11	100964181	100964279	protein_coding	Fam134c	intron	ENSMUSG00000017802	ProperStrand	36	chr12	78350927	78350985	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.9087
chr10	128438936	128439036	LTR	RLTR6-int	ERV1	chr10RLTR6-int128438457	NonProperStrand	8	chr16	8745774	8745866	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	3	-21.4125
chr2	180689332	180689422	antisense	Gm14341	.	ENSMUSG00000087293	NonProperStrand	32	chr2	180689113	180689213	protein_coding	Nkain4	intron	ENSMUSG00000027574	ProperStrand	35	1	-14.3830
chr14	32332780	32332870	LTR	MTD	MaLR	chr14MTD32332530	NonProperStrand	3	chr14	32332871	32333778	LTR	RMER10A	ERVL	chr14RMER10A32333527	ProperStrand	2	2	-inf
chr2	102829380	102829446	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr15	79089235	79089291	protein_coding	Baiap2l2	intron	ENSMUSG00000018126	NonProperStrand	26	1	-11.5663
chr17	39847842	39847932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	103773053	103775423	SINE	B4	B4	chr2B4103773677	NonProperStrand	1	1	-inf
chr11	109011794	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr19	7431995	7432023	protein_coding	AI846148	utr3	ENSMUSG00000024970	ProperStrand	33	1	-7.2886
chr11	109011692	109011715	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr19	42395465	42395548	protein_coding	Crtac1	intron	ENSMUSG00000042401	ProperStrand	106	1	-4.9891
chr6	108422231	108422304	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr5	145183806	145183822	protein_coding	Bri3	intron	ENSMUSG00000047843	ProperStrand	118	1	-7.0837
chr3	110594613	110594713	LTR	MTA_Mm-int	MaLR	chr3MTA_Mm-int110594462	NonProperStrand	1	chr3	110594329	110594419	LTR	MTA_Mm	MaLR	chr3MTA_Mm110594069	NonProperStrand	1	1	-inf
chr2	152313104	152313165	protein_coding	Defb22	intron	ENSMUSG00000027468	NonProperStrand	5	chr1	118459136	118459191	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	NonProperStrand	63	1	-17.1206
chr1	54366372	54366462	protein_coding	Ccdc150	intron	ENSMUSG00000025983	NonProperStrand	15	chr1	54460798	54460898	protein_coding	Gtf3c3	intron	ENSMUSG00000041303	NonProperStrand	3	1	-inf
chr1	89643072	89643162	LTR	MERVL-int	ERVL	chr1MERVL-int89638707	NonProperStrand	22	chr1	89643252	89643352	LTR	MERVL-int	ERVL	chr1MERVL-int89643132	NonProperStrand	5	3	-inf
chr13	9834328	9834373	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chrX	48121918	48121935	LINE	L1Md_F2	L1	chrXL1Md_F248119935	NonProperStrand	5	1	-14.2762
chr3	22099024	22099108	protein_coding	Tbl1xr1	intron	ENSMUSG00000027630	NonProperStrand	10	chr3	86547276	86547292	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-14.0169
chr19	46409803	46409903	lincRNA	Gm17393	exon	ENSMUSG00000091234	ProperStrand	6	chr19	46409160	46409250	protein_coding	Cuedc2	intron	ENSMUSG00000036748	NonProperStrand	9	1	-inf
chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	86554079	86554187	SINE	RSINE1	B4	chr6RSINE186554083	NonProperStrand	1	1	-inf
chr11	96073635	96073968	SINE	RSINE1	B4	chr11RSINE196073608	NonProperStrand	2	chr11	96075019	96075605	SINE	RSINE1	B4	chr11RSINE196075510	ProperStrand	3	1	-20.8297
chr2	118609558	118609658	protein_coding	Disp2	intron	ENSMUSG00000040035	ProperStrand	47	chr13	17718012	17718102	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	3	-inf
chr1	89640737	89640769	LTR	MERVL-int	ERVL	chr1MERVL-int89638707	NonProperStrand	22	chr1	89638214	89638330	LTR	MT2_Mm	ERVL	chr1MT2_Mm89638089	NonProperStrand	3	1	-inf
chr9	17987811	17987834	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr11	78337827	78339388	protein_coding	Tnfaip1	utr3	ENSMUSG00000017615	NonProperStrand	23	2	-21.0006
chr3	116870582	116870606	LINE	L1Md_F2	L1	chr3L1Md_F2116869942	NonProperStrand	2	chr13	109678979	109679005	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-15.4433
chr14	75847914	75848016	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr6	129186204	129186226	lincRNA	2310001H17Rik	intron	ENSMUSG00000085930	ProperStrand	2	1	-22.0647
chr19	5347256	5347280	protein_coding	Cst6	utr3	ENSMUSG00000024846	NonProperStrand	2	chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	30321928	30321945	SINE	PB1D9	Alu	chr2PB1D930321890	NonProperStrand	2	chr5	33614655	33614780	protein_coding	Ctbp1	intron	ENSMUSG00000037373	ProperStrand	23	1	-20.7239
chr4	149649245	149649262	SINE	B1_Mur1	Alu	chr4B1_Mur1149649186	ProperStrand	2	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr15	25807780	25807830	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	163	chr17	30643313	30644610	protein_coding	Btbd9	intron	ENSMUSG00000062202	NonProperStrand	156	1	-8.1059
chr13	112578205	112578305	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr9	62792485	62792575	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-3.0707
chr17	39847103	39847329	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	6	-3.9170
chr4	136190755	136190778	lincRNA	Lactbl1	intron	ENSMUSG00000070683	ProperStrand	6	chr9	105666135	105666222	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-19.0481
chr17	39846462	39846483	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	149160859	149161636	LTR	ORR1A2-int	MaLR	chr4ORR1A2-int149160753	NonProperStrand	1	1	-inf
chr17	39848134	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	3908929	3909041	protein_coding	Ndufs8	utr3	ENSMUSG00000059734	ProperStrand	2	1	-8.4422
chr17	39846745	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	27733919	27734000	SINE	B3	B2	chr7B327733889	ProperStrand	1	1	-inf
chr7	91374406	91374496	LINE	L1MB8	L1	chr7L1MB891374414	ProperStrand	1	chr7	91374023	91374123	LTR	IAPLTR2a	ERVK	chr7IAPLTR2a91373975	ProperStrand	1	1	-inf
chr10	40258543	40258623	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr9	65201725	65201798	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-4.4306
chr8	70895779	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-6.4081
chr4	101080993	101081075	LTR	MERVL-int	ERVL	chr4MERVL-int101080890	NonProperStrand	8	chr14	7909748	7912966	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	2	-inf
chr11	109011655	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	164437484	164437538	SINE	B2_Mm2	B2	chr1B2_Mm2164437369	NonProperStrand	2	1	-13.5345
chrX	157542893	157542936	LTR	MMERGLN-int	ERV1	chrXMMERGLN-int157539252	ProperStrand	2	chr12	109546448	109546498	protein_coding	Hhipl1	intron	ENSMUSG00000021260	ProperStrand	179	1	-17.3078
chr10	28187140	28187238	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	chr3	108012693	108012718	protein_coding	Atxn7l2	intron	ENSMUSG00000048997	ProperStrand	4	1	-15.8744
chr9	123461791	123462184	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	110281274	110281363	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	25	-11.6121
chr4	139454124	139454214	LTR	RMER19A	ERVK	chr4RMER19A139454098	ProperStrand	3	chr4	139454243	139454343	Simple_repeat	(TATG)n	Simple_repeat	chr4(TATG)n139454203	ProperStrand	4	3	-inf
chr7	19930688	19930788	protein_coding	Ercc1	intron	ENSMUSG00000003549	ProperStrand	9	chr8	123204715	123204805	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	6	-20.4502
chr2	132140718	132140813	LTR	ORR1D2	MaLR	chr2ORR1D2132140636	ProperStrand	1	chr8	4214754	4214780	protein_coding	BC068157	exon	ENSMUSG00000064125	ProperStrand	1	1	-inf
chr13	84260560	84260620	LTR	MYSERV6-int	ERVK	chr13MYSERV6-int84260311	NonProperStrand	1	chr17	39847762	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	96220466	96220554	LTR	RLTR33	ERVK	chr3RLTR3396220444	ProperStrand	5	1	-3.1907
chr9	123462046	123462083	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	145603990	145604062	protein_coding	2410004B18Rik	intron	ENSMUSG00000036873	ProperStrand	7	1	-5.1121
chr4	43492784	43492910	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr5	148315310	148315326	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-6.5474
chr1	179368002	179368091	lincRNA	Gm17407	intron	ENSMUSG00000078909	ProperStrand	35	chr17	91272048	91272089	protein_coding	Nrxn1	intron	ENSMUSG00000024109	NonProperStrand	30	1	-14.5134
chr1	168310470	168310570	antisense	Gm15853	.	ENSMUSG00000089853	ProperStrand	3	chr1	168310613	168310704	protein_coding	Tada1	intron	ENSMUSG00000026563	NonProperStrand	6	2	-inf
chr1	92079518	92079583	Simple_repeat	(ATGGTG)n	Simple_repeat	chr1(ATGGTG)n92079524	NonProperStrand	2	chr9	123461957	123461988	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr17	39845953	39846070	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr9	98992735	98998990	protein_coding	Pik3cb	intron	ENSMUSG00000032462	NonProperStrand	19	1	-4.0407
chr8	103495224	103495324	LINE	Lx8	L1	chr8Lx8103495189	ProperStrand	1	chr8	103495377	103495467	LINE	Lx8	L1	chr8Lx8103495394	ProperStrand	1	1	-inf
chr11	113512592	113512700	protein_coding	Cog1	intron	ENSMUSG00000018661	NonProperStrand	7	chr3	90220975	90220991	protein_coding	Ints3	intron	ENSMUSG00000027933	NonProperStrand	20	1	-18.9516
chr9	123461871	123461903	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr7	111122573	111122670	pseudogene	Gm4886	.	ENSMUSG00000082281	ProperStrand	1	1	-inf
chr17	39847274	39847295	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	102310497	102310528	protein_coding	2610029G23Rik	intron	ENSMUSG00000031226	NonProperStrand	4	1	-4.8204
chr8	31149862	31149962	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr17	39847442	39847892	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	10	-4.3018
chr3	75621448	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr3	37481319	37481352	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	1	-14.9385
chr7	130190845	130190935	DNA	Charlie25	MER1_type	chr7Charlie25130190172	ProperStrand	1	chr7	130191136	130191236	SINE	B4A	B4	chr7B4A130191152	NonProperStrand	1	1	-inf
chr10	127846088	127846112	protein_coding	Obfc2b	intron	ENSMUSG00000025374	NonProperStrand	1	chr3	51496078	51496174	protein_coding	Maml3	intron	ENSMUSG00000061143	ProperStrand	37	1	-inf
chr5	29374435	29374474	LINE	L1_Mus3	L1	chr5L1_Mus329374229	ProperStrand	7	chr5	29367064	29367161	LTR	MMETn-int	ERVK	chr5MMETn-int29367047	ProperStrand	2	1	-21.4874
chr2	151556101	151556161	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	58	chr14	7933886	7933936	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-9.6271
chr17	70963679	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	61491196	61491245	protein_coding	Slc5a10	intron	ENSMUSG00000042371	ProperStrand	108	1	-5.0590
chr5	131873307	131873407	LTR	MTE2a	MaLR	chr5MTE2a131873271	ProperStrand	2	chr14	20756682	20756772	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	2	-inf
chr17	39843488	39843562	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr10	43302069	43302119	protein_coding	Cd24a	intron	ENSMUSG00000047139	ProperStrand	13	1	-5.4538
chr16	38754053	38754129	protein_coding	B4galt4	exon	ENSMUSG00000022793	ProperStrand	1	chr10	63330565	63330647	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-inf
chr18	36468629	36468729	LINE	L2b	L2	chr18L2b36468647	ProperStrand	1	chr18	36468542	36468632	LTR	ORR1A4	MaLR	chr18ORR1A436468321	NonProperStrand	1	1	-inf
chr19	5952491	5952581	protein_coding	Pola2	intron	ENSMUSG00000024833	ProperStrand	80	chr11	23335616	23335716	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-9.5662
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr2	119801627	119801653	protein_coding	Mapkbp1	intron	ENSMUSG00000033902	ProperStrand	29	1	-8.0247
chr12	78350873	78350926	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr13	11956961	11957005	protein_coding	Ryr2	intron	ENSMUSG00000021313	ProperStrand	81	1	-5.3092
chr13	97124537	97124576	LTR	RLTR10A	ERVK	chr13RLTR10A97124466	ProperStrand	1	chrX	106202891	106203266	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	1	-inf
chr5	107188556	107188574	LINE	Lx3B	L1	chr5Lx3B107188487	ProperStrand	5	chr17	39846277	39846786	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-9.1539
chr17	39846583	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	103811391	103811408	protein_coding	Gm5127	intron	ENSMUSG00000073010	ProperStrand	1	1	-inf
chr5	56710153	56710253	LINE	Lx4A	L1	chr5Lx4A56710089	NonProperStrand	1	chr5	56709804	56709894	LINE	Lx5	L1	chr5Lx556708757	ProperStrand	1	1	-inf
chr13	51128127	51128217	LTR	IAPEz-int	ERVK	chr13IAPEz-int51128112	NonProperStrand	1	chr13	51128030	51128130	LTR	IAPLTR2_Mm	ERVK	chr13IAPLTR2_Mm51127670	NonProperStrand	1	1	-inf
chr15	53264038	53264138	LINE	Lx7	L1	chr15Lx753263343	ProperStrand	21	chr15	53312099	53312188	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-10.4669
chr17	39847203	39847262	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	156144535	156145626	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	ProperStrand	4	1	-4.8204
chr12	102626662	102626787	LINE	Lx2	L1	chr12Lx2102626215	NonProperStrand	1	chr12	102628507	102628538	LINE	Lx4B	L1	chr12Lx4B102627938	NonProperStrand	4	1	-inf
chr1	133383604	133383694	protein_coding	Srgap2	intron	ENSMUSG00000026425	ProperStrand	73	chr4	58908593	58908693	protein_coding	AI314180	intron	ENSMUSG00000050812	ProperStrand	16	1	-14.3206
chr17	39847271	39847294	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	45267199	45267220	lincRNA	Gm12162	intron	ENSMUSG00000085476	ProperStrand	1	1	-inf
chr13	55312599	55312660	protein_coding	Nsd1	intron	ENSMUSG00000021488	ProperStrand	81	chr3	27137053	27137097	protein_coding	Nceh1	intron	ENSMUSG00000027698	NonProperStrand	62	1	-11.3529
chr13	114131514	114131575	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	chr4	117890360	117890426	protein_coding	Ptprf	intron	ENSMUSG00000033295	ProperStrand	98	1	-10.1777
chr17	39847926	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	24109763	24109804	lincRNA	Gm12066	intron	ENSMUSG00000085579	ProperStrand	3	1	-4.3512
chr12	85344274	85344307	LTR	IAPLTR2a	ERVK	chr12IAPLTR2a85343976	ProperStrand	1	chr13	36004182	36004284	LTR	RMER19C	ERVK	chr13RMER19C36004134	ProperStrand	1	1	-inf
chr3	104502713	104502813	LTR	RLTR42-int	ERVK	chr3RLTR42-int104502718	NonProperStrand	2	chr3	104502850	104502940	SINE	B2_Mm2	B2	chr3B2_Mm2104502876	ProperStrand	2	2	-inf
chr18	40380321	40380397	LTR	MLT1C	MaLR	chr18MLT1C40380081	NonProperStrand	1	chr13	44869601	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr3	137865184	137865576	LINE	L1Md_A	L1	chr3L1Md_A137863249	NonProperStrand	43	chr15	98519311	98519384	LTR	ORR1C1	MaLR	chr15ORR1C198519301	ProperStrand	4	1	-18.6449
chr12	118484250	118484350	protein_coding	Ptprn2	intron	ENSMUSG00000056553	NonProperStrand	35	chr12	117914755	117914845	protein_coding	Ptprn2	intron	ENSMUSG00000056553	ProperStrand	87	1	-12.3645
chr17	39846207	39846282	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	99017070	99017153	SINE	B1_Mur3	Alu	chr11B1_Mur399017062	ProperStrand	1	1	-inf
chrX	19619699	19619747	LINE	L1Md_F3	L1	chrXL1Md_F319619412	ProperStrand	1	chr13	116855288	116862222	LTR	RLTR13B2	ERVK	chr13RLTR13B2116861898	ProperStrand	1	1	-inf
chr8	84658650	84658727	LINE	L1MD	L1	chr8L1MD84658397	ProperStrand	1	chr1	162684194	162688119	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	1	-inf
chr9	45943093	45943170	protein_coding	Sik3	intron	ENSMUSG00000034135	NonProperStrand	65	chr15	101266750	101266783	protein_coding	Krt83	intron	ENSMUSG00000047641	NonProperStrand	30	1	-13.2641
chr5	136232967	136233057	protein_coding	Styxl1	intron	ENSMUSG00000019178	ProperStrand	11	chr19	16757557	16757657	protein_coding	Vps13a	intron	ENSMUSG00000046230	ProperStrand	15	1	-18.2570
chr9	26082904	26082994	LTR	MTE-int	MaLR	chr9MTE-int26082684	NonProperStrand	1	chr9	26083364	26083464	LTR	MTE-int	MaLR	chr9MTE-int26083221	ProperStrand	1	1	-inf
chr17	39847155	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	120933121	120933289	SINE	PB1D10	Alu	chr14PB1D10120933192	ProperStrand	1	1	-inf
chr4	130190050	130190140	LINE	L1_Mur2	L1	chr4L1_Mur2130190072	ProperStrand	1	chr4	130189689	130189789	SINE	B3A	B2	chr4B3A130189621	NonProperStrand	1	1	-inf
chr13	19463983	19463999	protein_coding	Stard3nl	intron	ENSMUSG00000003062	NonProperStrand	4	chr6	71882555	71882667	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	2	-inf
chr1	161035398	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr7	134935568	134935626	protein_coding	Setd1a	intron	ENSMUSG00000042308	ProperStrand	59	1	-12.4653
chr17	39846932	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	87756245	87756303	Simple_repeat	(TTC)n	Simple_repeat	chr11(TTC)n87756256	ProperStrand	1	1	-inf
chr8	114985609	114985703	LINE	L1M4	L1	chr8L1M4114985624	ProperStrand	1	chr8	114983035	114983070	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n114983028	ProperStrand	1	1	-inf
chr18	50146492	50155135	protein_coding	Tnfaip8	intron	ENSMUSG00000062210	ProperStrand	33	chr17	29678899	29678944	protein_coding	Tmem217	intron	ENSMUSG00000079580	NonProperStrand	32	1	-14.4996
chr3	127292798	127292855	protein_coding	4930422G04Rik	intron	ENSMUSG00000051278	NonProperStrand	4	chr7	19152499	19152566	protein_coding	Psg27	utr5	ENSMUSG00000070797	NonProperStrand	12	1	-22.2547
chr16	35928011	35928111	protein_coding	Dtx3l	utr3	ENSMUSG00000049502	NonProperStrand	5	chr3	103932487	103932577	protein_coding	Magi3	intron	ENSMUSG00000052539	NonProperStrand	69	1	-16.9564
chr16	86916470	86916570	LINE	L1Md_F2	L1	chr16L1Md_F286915758	NonProperStrand	1	chr14	33967381	33967471	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-inf
chr9	73019724	73019763	LTR	LTRIS4	ERV1	chr9LTRIS473019599	NonProperStrand	1	chrX	94540413	94540525	protein_coding	Eda2r	intron	ENSMUSG00000034457	ProperStrand	8	1	-inf
chr4	124760773	124760858	antisense	Gm12932	.	ENSMUSG00000086342	NonProperStrand	1	chr4	124764944	124764969	protein_coding	Meaf6	intron	ENSMUSG00000028863	ProperStrand	23	1	-inf
chr5	113872403	113872480	LTR	RLTR11A	ERVK	chr5RLTR11A113871910	ProperStrand	2	chr16	37564501	37564571	protein_coding	Rabl3	intron	ENSMUSG00000022827	ProperStrand	16	1	-inf
chr17	46018869	46021043	LTR	MTEa	MaLR	chr17MTEa46018933	NonProperStrand	1	chrX	163978881	163978954	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	53	1	-inf
chr15	59505176	59505266	LINE	L1_Mur3	L1	chr15L1_Mur359504565	ProperStrand	2	chr15	59505298	59505398	LINE	L1_Mur3	L1	chr15L1_Mur359505310	ProperStrand	2	2	-inf
chr6	30256827	30256875	lincRNA	1700095J07Rik	intron	ENSMUSG00000084861	NonProperStrand	16	chr13	99958890	99958994	protein_coding	Zfp366	intron	ENSMUSG00000050919	NonProperStrand	32	1	-15.9908
chr17	39847037	39847174	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	33610453	33610469	protein_coding	Ctbp1	intron	ENSMUSG00000037373	NonProperStrand	3	1	-4.3017
chr14	18886736	18886781	LINE	L1_Mus2	L1	chr14L1_Mus218885546	NonProperStrand	1	chr16	35981622	35981647	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-inf
chr3	137924030	137924112	protein_coding-noncoding	Adh1	utr5	ENSMUSG00000074207	ProperStrand	1	chr3	137924186	137924218	protein_coding	Adh1	intron	ENSMUSG00000074207	ProperStrand	6	1	-inf
chr15	67650994	67651094	LINE	Lx7	L1	chr15Lx767649644	ProperStrand	1	chr15	67651304	67651394	LINE	Lx7	L1	chr15Lx767651327	ProperStrand	1	1	-inf
chr10	62809636	62809716	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr15	84240763	84240828	protein_coding	1810041L15Rik	intron	ENSMUSG00000062760	NonProperStrand	118	1	-7.9943
chr3	153911610	153911652	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr9	64176659	64176721	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-5.8212
chr17	39847471	39847541	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	80591582	80591622	LTR	RLTR33	ERVK	chr17RLTR3380591502	NonProperStrand	1	1	-inf
chr17	39846951	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	40745539	40748546	LTR	MLT1F	MaLR	chr4MLT1F40745521	NonProperStrand	2	1	-5.3533
chr3	67254421	67254498	protein_coding	Gfm1	intron	ENSMUSG00000027774	ProperStrand	14	chr15	83149716	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-13.2997
chr2	181637077	181640657	LTR	MMERVK10C-int	ERVK	chr2MMERVK10C-int181637076	NonProperStrand	10	chr2	181636991	181637081	LTR	RLTR10C	ERVK	chr2RLTR10C181636652	NonProperStrand	7	7	-inf
chr12	57294766	57294802	LTR	RMER19C	ERVK	chr12RMER19C57294160	ProperStrand	1	chr1	136914666	136914692	protein_coding	Lgr6	intron	ENSMUSG00000042793	ProperStrand	106	1	-inf
chr17	39846822	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	35893907	35894009	SINE	MIR	MIR	chr12MIR35893797	ProperStrand	1	1	-inf
chr8	120673990	120674011	LTR	RMER15	ERVL	chr8RMER15120673933	NonProperStrand	19	chr4	107879885	107880913	protein_coding	Zyg11a	intron	ENSMUSG00000034645	NonProperStrand	13	1	-17.5680
chr13	114094245	114094305	LINE	L1Md_F2	L1	chr13L1Md_F2114088300	NonProperStrand	18	chr13	114068032	114068102	LTR	IAPEz-int	ERVK	chr13IAPEz-int114063503	ProperStrand	37	1	-15.4557
chr17	39847702	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	102094701	102094759	SINE	ID_B1	B4	chr15ID_B1102094715	ProperStrand	5	1	-3.2379
chr17	39847444	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	5043888	5043977	protein_coding	Brms1	intron	ENSMUSG00000080268	ProperStrand	5	1	-3.2379
chr11	116757717	116757747	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr14	27465444	27465464	protein_coding	Arf4	intron	ENSMUSG00000021877	ProperStrand	19	1	-14.9789
chr11	109011656	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	91674007	91674094	protein_coding	Son	utr5	ENSMUSG00000022961	ProperStrand	70	1	-5.7965
chr2	115660830	115660930	LINE	Lx5	L1	chr2Lx5115660835	ProperStrand	4	chr2	115660743	115660833	SINE	B4A	B4	chr2B4A115660710	NonProperStrand	2	2	-inf
chr11	77834100	77834166	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	chr2	166869023	166870265	protein_coding	Znfx1	intron	ENSMUSG00000039501	NonProperStrand	7	1	-14.5608
chr15	76074339	76074388	SINE	RSINE1	B4	chr15RSINE176074296	NonProperStrand	1	chr9	99568812	99568851	protein_coding	Dzip1l	utr3	ENSMUSG00000037784	NonProperStrand	6	1	-inf
chrX	77591487	77591577	LINE	Lx3B	L1	chrXLx3B77590187	ProperStrand	4	chr17	39847060	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr11	103646417	103646437	protein_coding	Wnt3	intron	ENSMUSG00000000125	ProperStrand	8	chr9	123461977	123462061	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr6	49252615	49252644	LTR	RLTR40	ERVK	chr6RLTR4049252224	ProperStrand	4	chr4	54958567	54958696	protein_coding	Zfp462	intron	ENSMUSG00000060206	ProperStrand	174	2	-inf
chr10	46973796	46973896	LINE	L1VL4	L1	chr10L1VL446973591	NonProperStrand	6	chr17	4082194	4082284	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	6	-inf
chr6	104379019	104379109	LINE	Lx4B	L1	chr6Lx4B104378793	NonProperStrand	1	chr1	79607192	79607292	protein_coding	Ap1s3	intron	ENSMUSG00000054702	ProperStrand	24	1	-inf
chr17	39846307	39846353	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	3921970	3922063	protein_coding	Aldh3b1	intron	ENSMUSG00000024885	NonProperStrand	4	1	-3.6552
chr11	82943616	82943637	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	14	chr17	39847452	39848035	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-4.4446
chr13	3538257	3538299	protein_coding	Gdi2	intron	ENSMUSG00000021218	ProperStrand	39	chr13	44869595	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.3266
chr10	30811159	30811214	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr2	5379271	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.5903
chr17	39846491	39846538	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	33383893	33383930	protein_coding	Ercc6	intron	ENSMUSG00000054051	NonProperStrand	5	1	-3.1907
chr14	60639759	60639859	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr9	120987116	120987164	protein_coding	Ulk4	intron	ENSMUSG00000040936	ProperStrand	30	1	-10.9879
chr2	156624520	156624595	LTR	MYSERV6-int	ERVK	chr2MYSERV6-int156624502	ProperStrand	4	chr2	156622500	156622565	LTR	RMER16-int	ERVK	chr2RMER16-int156622247	ProperStrand	3	1	-inf
chr17	39846818	39846871	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	122125278	122125383	protein_coding	Duoxa2	intron	ENSMUSG00000027225	NonProperStrand	1	1	-inf
chr10	93200389	93200434	protein_coding	Ntn4	intron	ENSMUSG00000020019	ProperStrand	13	chr16	93716698	93716805	protein_coding	Dopey2	intron	ENSMUSG00000022946	ProperStrand	55	1	-15.3195
chr17	39846847	39846922	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	30388655	30388694	protein_coding-noncoding	Atp13a3	utr3	ENSMUSG00000022533	ProperStrand	3	1	-4.3017
chr16	20651818	20652255	protein_coding	Psmd2	exon	ENSMUSG00000006998	ProperStrand	34	chr12	84448948	84449046	protein_coding	Dpf3	intron	ENSMUSG00000021221	ProperStrand	24	1	-15.0335
chr17	39847348	39847391	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	179300022	179300130	LTR	MTEb	MaLR	chr1MTEb179299921	NonProperStrand	1	1	-inf
chr16	38560312	38560402	protein_coding	Tmem39a	intron	ENSMUSG00000002845	ProperStrand	41	chr9	44531189	44531289	protein_coding	Phldb1	intron	ENSMUSG00000048537	ProperStrand	1	1	-inf
chr11	94296058	94296910	protein_coding	Cacna1g	intron	ENSMUSG00000020866	ProperStrand	40	chr12	55052392	55052426	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	1	-11.1537
chr2	177478969	177479054	LINE	L1VL1	L1	chr2L1VL1177476150	ProperStrand	8	chr2	134626468	134626501	protein_coding	Plcb1	intron	ENSMUSG00000051177	NonProperStrand	12	1	-19.4872
chr1	167276409	167276492	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	chr8	84498236	84498270	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-3.2255
chr1	153456739	153457591	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	chr5	125131217	125131282	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	301	1	-7.6008
chr12	55269056	55269156	LINE	L1MDb	L1	chr12L1MDb55269024	NonProperStrand	2	chr12	55268946	55269036	SINE	B3	B2	chr12B355268811	NonProperStrand	2	2	-inf
chr5	67476361	67476432	LTR	RMER19C	ERVK	chr5RMER19C67476174	ProperStrand	3	chr11	80046921	80046967	protein_coding	Rhot1	exon	ENSMUSG00000017686	NonProperStrand	25	1	-19.8841
chr5	115609247	115609515	SINE	PB1D7	Alu	chr5PB1D7115609214	ProperStrand	6	chr5	115606638	115609263	protein_coding	Mlec	intron	ENSMUSG00000048578	NonProperStrand	54	1	-16.9865
chr17	24681489	24681581	LTR	RMER4B	ERVK	chr17RMER4B24681366	NonProperStrand	2	chr17	24681576	24681767	Simple_repeat	(CAG)n	Simple_repeat	chr17(CAG)n24681598	ProperStrand	9	2	-inf
chr9	70017789	70017871	lincRNA	Gm17406	exon	ENSMUSG00000091654	NonProperStrand	7	chrX	163954477	163956484	protein_coding	Frmpd4	intron	ENSMUSG00000049176	NonProperStrand	76	1	-15.9907
chr6	124741224	124741273	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr19	47285296	47285406	protein_coding	Neurl1a	intron	ENSMUSG00000006435	NonProperStrand	150	1	-13.4679
chr8	13779060	13779150	protein_coding-noncoding	Cdc16	utr5	ENSMUSG00000038416	NonProperStrand	2	chr8	13778948	13779048	protein_coding	Cdc16	intron	ENSMUSG00000038416	NonProperStrand	6	2	-inf
chr17	39846883	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	74931138	74931172	lincRNA	4833412C05Rik	intron	ENSMUSG00000085850	ProperStrand	3	1	-4.3017
chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	104820814	104820946	LTR	RLTR26	ERVK	chr5RLTR26104820576	ProperStrand	2	1	-5.3533
chr10	110784287	110784374	SINE	B1_Mus2	Alu	chr10B1_Mus2110784289	ProperStrand	2	chr13	55460046	55460102	protein_coding	Lman2	intron	ENSMUSG00000021484	NonProperStrand	69	1	-18.8980
chr7	66063834	66069207	protein_coding	Atp10a	exon	ENSMUSG00000025324	ProperStrand	84	chr14	66859611	66859718	protein_coding	Ptk2b	intron	ENSMUSG00000059456	ProperStrand	38	1	-12.2686
chr3	10481754	10481844	LINE	L1_Mus3	L1	chr3L1_Mus310481448	ProperStrand	1	chr3	10481171	10481271	LTR	MT2C_Mm	ERVL	chr3MT2C_Mm10481026	ProperStrand	1	1	-inf
chr17	39847461	39847530	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	99104454	99104530	protein_coding	Fam186b	intron	ENSMUSG00000078907	NonProperStrand	1	1	-inf
chr1	189002126	189002240	protein_coding	Spata17	intron	ENSMUSG00000026611	ProperStrand	80	chr1	89461838	89461855	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	1	-7.8289
chr17	39848540	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	33264786	33264863	protein_coding	Pm20d2	intron	ENSMUSG00000054659	ProperStrand	1	1	-inf
chr5	36002221	36002243	protein_coding	Htra3	intron	ENSMUSG00000029096	ProperStrand	6	chr6	113383771	113383835	protein_coding	Cidec	intron	ENSMUSG00000030278	NonProperStrand	13	1	-inf
chr13	53587922	53588012	LTR	RMER15	ERVL	chr13RMER1553587869	NonProperStrand	1	chr13	53587718	53587818	SINE	ID_B1	B4	chr13ID_B153587662	NonProperStrand	1	1	-inf
chr2	109250182	109250272	LTR	MTC	MaLR	chr2MTC109250079	ProperStrand	1	chr2	109250002	109250102	LTR	ORR1A1	MaLR	chr2ORR1A1109249755	NonProperStrand	1	1	-inf
chr10	80123531	80123631	SINE	B1_Mus1	Alu	chr10B1_Mus180123546	NonProperStrand	2	chr10	80123436	80123526	SINE	B2_Mm2	B2	chr10B2_Mm280123347	NonProperStrand	3	2	-inf
chr6	35236794	35236870	protein_coding-noncoding	Slc13a4	utr3	ENSMUSG00000029843	NonProperStrand	5	chr6	35241415	35243851	protein_coding	Slc13a4	intron	ENSMUSG00000029843	NonProperStrand	32	1	-18.3156
chr17	39847552	39847636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	100761049	100761111	LTR	MTC	MaLR	chr7MTC100761049	NonProperStrand	1	1	-inf
chr13	23739167	23739221	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int23738136	NonProperStrand	71	chr3	90000951	90001866	protein_coding	Nup210l	intron	ENSMUSG00000027939	NonProperStrand	45	1	-12.2645
chr8	4266476	4266576	protein_coding-noncoding	Timm44	utr3	ENSMUSG00000002949	ProperStrand	5	chr8	4266573	4266663	protein_coding	Timm44	exon	ENSMUSG00000002949	ProperStrand	12	3	-inf
chr7	92878763	92878784	LINE	L1Md_F	L1	chr7L1Md_F92876571	ProperStrand	3	chr10	72904599	72904630	protein_coding	Pcdh15	intron	ENSMUSG00000052613	ProperStrand	94	1	-17.5006
chr9	72067337	72067391	SINE	B1F	Alu	chr9B1F72067289	NonProperStrand	1	chr15	50649255	50649299	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	1	-inf
chr11	109011786	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	48368676	48368759	protein_coding	Rap2c	intron	ENSMUSG00000050029	NonProperStrand	18	1	-8.5158
chr11	109011791	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	6675538	6675587	SINE	B3	B2	chr11B36675541	NonProperStrand	1	1	-inf
chr12	67606765	67606865	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr12	42233118	42233208	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	1	-11.3141
chr17	39847598	39847722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	63431709	63431728	protein_coding	Fancc	intron	ENSMUSG00000021461	NonProperStrand	5	1	-3.2379
chr5	146261170	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	11933381	11933476	protein_coding	Grb10	intron	ENSMUSG00000020176	ProperStrand	14	1	-7.9707
chr18	67310968	67310995	protein_coding	Gnal	intron	ENSMUSG00000024524	ProperStrand	146	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.8577
chr14	54949909	54950087	LTR	RLTR23	ERV1	chr14RLTR2354949882	NonProperStrand	2	chr14	54949436	54949846	Simple_repeat	(GGA)n	Simple_repeat	chr14(GGA)n54949429	NonProperStrand	1	1	-inf
chr6	81961646	81961746	LTR	MTEa	MaLR	chr6MTEa81961651	ProperStrand	2	chr7	130684201	130684291	LTR	MLT1K	MaLR	chr7MLT1K130684167	ProperStrand	4	2	-inf
chr5	146261266	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr1	71645588	71648018	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	1	-9.7725
chr10	27895088	27895188	protein_coding	Ptprk	intron	ENSMUSG00000019889	NonProperStrand	21	chr7	103550791	103550881	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-14.1548
chr9	108833678	108833880	SINE	B1_Mur1	Alu	chr9B1_Mur1108833631	ProperStrand	3	chr9	108833899	108833999	SINE	B1_Mur2	Alu	chr9B1_Mur2108833855	NonProperStrand	3	3	-inf
chr11	75400695	75400795	SINE	PB1D10	Alu	chr11PB1D1075400656	NonProperStrand	1	chr5	148522877	148522967	protein_coding	Flt1	intron	ENSMUSG00000029648	ProperStrand	93	1	-inf
chr7	135705652	135705697	LTR	RLTR18	ERVK	chr7RLTR18135705648	ProperStrand	1	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr16	14453833	14453906	protein_coding	Abcc1	intron	ENSMUSG00000023088	ProperStrand	122	chr5	141719478	141719542	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-7.3444
chr7	131117138	131117238	LTR	MTD-int	MaLR	chr7MTD-int131116992	NonProperStrand	1	chr7	131117265	131117355	SINE	B1_Mur4	Alu	chr7B1_Mur4131117276	ProperStrand	1	1	-inf
chr11	57661931	57662021	LINE	L1MA4	L1	chr11L1MA457661903	NonProperStrand	1	chr11	57658473	57658573	SINE	ID_B1	B4	chr11ID_B157658464	NonProperStrand	2	1	-inf
chr14	54656981	54657085	LINE	L1MC3	L1	chr14L1MC354656782	NonProperStrand	1	chr14	54655876	54655909	LTR	MT2A	ERVL	chr14MT2A54655789	ProperStrand	1	1	-inf
chr14	118562519	118562553	protein_coding	Gpr180	utr3	ENSMUSG00000022131	NonProperStrand	17	chr9	123462035	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	99737432	99737521	protein_coding	Ankrd42	intron	ENSMUSG00000041343	ProperStrand	3	1	-4.3017
chr14	122203902	122203992	SINE	B3	B2	chr14B3122203763	ProperStrand	9	chr14	122203986	122204086	SINE	B3	B2	chr14B3122203985	ProperStrand	5	4	-inf
chr19	8832471	8832505	protein_coding	Nxf1	intron	ENSMUSG00000010097	ProperStrand	13	chr13	45687836	45687904	protein_coding	Atxn1	intron	ENSMUSG00000046876	ProperStrand	103	1	-14.0553
chr6	90464178	90464242	protein_coding	Aldh1l1	intron	ENSMUSG00000030088	ProperStrand	124	chr6	95541074	95541158	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-8.6766
chr8	11814972	11815012	protein_coding	Arhgef7	exon	ENSMUSG00000031511	ProperStrand	147	chr9	65201724	65201795	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-9.2602
chr11	106155077	106155101	LTR	IAPEz-int	ERVK	chr11IAPEz-int106154362	NonProperStrand	3	chr11	106149558	106149666	protein_coding	Tcam1	utr3	ENSMUSG00000020712	ProperStrand	4	1	-inf
chr17	39847230	39847275	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	47964203	47964249	lincRNA	6720401G13Rik	intron	ENSMUSG00000085396	NonProperStrand	9	1	-3.1539
chr18	35557091	35557224	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr4	34570107	34570123	protein_coding	Rars2	intron	ENSMUSG00000028292	ProperStrand	13	1	-11.5257
chr14	95449951	95450051	LINE	L1Md_T	L1	chr14L1Md_T95448409	NonProperStrand	1	chr14	95450118	95450208	LTR	RMER12	ERVK	chr14RMER1295450101	NonProperStrand	1	1	-inf
chr7	26628076	26628166	LINE	Lx5	L1	chr7Lx526628037	NonProperStrand	1	chr7	26627840	26627940	LTR	RLTR25B	ERVK	chr7RLTR25B26627753	NonProperStrand	1	1	-inf
chr2	165829477	165829573	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	chr11	120346957	120346994	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	1	-8.0377
chr13	29957097	29957200	SINE	B2_Mm2	B2	chr13B2_Mm229957042	NonProperStrand	14	chr13	29957202	29957308	SINE	B3	B2	chr13B329957221	ProperStrand	6	6	-inf
chr11	86725198	86725247	DNA	URR1A	MER1_type	chr11URR1A86725138	ProperStrand	1	chr8	85855121	85855202	protein_coding	Elmod2	utr5	ENSMUSG00000035151	NonProperStrand	47	1	-inf
chr10	91117049	91117264	LINE	L1Md_F2	L1	chr10L1Md_F291116775	ProperStrand	13	chr12	109723821	109723846	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-10.8989
chr13	109517444	109517544	protein_coding	Pde4d	intron	ENSMUSG00000021699	NonProperStrand	44	chr18	75765201	75765291	protein_coding	Ctif	intron	ENSMUSG00000052928	NonProperStrand	13	1	-15.7779
chr1	31304680	31304779	LINE	L1_Rod	L1	chr1L1_Rod31304615	NonProperStrand	2	chr1	31304936	31305026	SINE	B1_Mus2	Alu	chr1B1_Mus231304853	NonProperStrand	2	2	-inf
chr18	60576156	60576245	LINE	L1Md_F	L1	chr18L1Md_F60575962	ProperStrand	3	chr3	10264170	10264270	protein_coding	Fabp12	intron	ENSMUSG00000027530	NonProperStrand	4	1	-inf
chr9	14560021	14560051	LTR	ORR1D2	MaLR	chr9ORR1D214559756	ProperStrand	1	chr11	106061387	106061467	protein_coding	Ccdc47	utr3	ENSMUSG00000078622	NonProperStrand	4	1	-inf
chr9	37652682	37652758	LINE	L1MEc	L1	chr9L1MEc37652064	NonProperStrand	8	chr9	37653068	37653139	SINE	MIRb	MIR	chr9MIRb37653067	ProperStrand	5	2	-inf
chr12	59072884	59072919	Simple_repeat	(TC)n	Simple_repeat	chr12(TC)n59072880	ProperStrand	1	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr13	112578183	112578246	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr11	102465978	102466016	protein_coding	Fzd2	utr5	ENSMUSG00000050288	NonProperStrand	1	1	-inf
chr17	39846659	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	85663525	85663619	protein_coding	Gm11444	intron	ENSMUSG00000069785	NonProperStrand	4	1	-3.6552
chr7	105381970	105382004	protein_coding	Acer3	intron	ENSMUSG00000030760	ProperStrand	49	chr7	99503885	99503918	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-9.9958
chr2	6181964	6181984	antisense	A230108P19Rik	.	ENSMUSG00000087125	ProperStrand	7	chr7	144305029	144305149	protein_coding	Mgmt	intron	ENSMUSG00000054612	ProperStrand	24	1	-18.3337
chrX	53622392	53622492	LTR	MLT1G	MaLR	chrXMLT1G53622372	ProperStrand	1	chrX	53622216	53622306	SINE	B1_Mur4	Alu	chrXB1_Mur453622215	NonProperStrand	1	1	-inf
chr5	144849984	144850049	SINE	B1_Mur4	Alu	chr5B1_Mur4144850002	ProperStrand	4	chr9	114759501	114759556	SINE	B3	B2	chr9B3114759415	NonProperStrand	4	4	-inf
chr15	23757456	23757474	LTR	RLTR1B-int	ERV1	chr15RLTR1B-int23754959	NonProperStrand	1	chr5	114851994	114852018	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr11	120954189	120955237	SINE	ID_B1	B4	chr11ID_B1120954162	NonProperStrand	2	chr11	120958209	120958309	lincRNA	Gm11791	intron	ENSMUSG00000084853	NonProperStrand	13	1	-inf
chr8	94262590	94262680	LTR	RMER17C	ERVK	chr8RMER17C94262577	ProperStrand	6	chr8	94262786	94262886	Simple_repeat	(TCTCCC)n	Simple_repeat	chr8(TCTCCC)n94262751	ProperStrand	4	3	-inf
chr11	115166850	115166940	LINE	L1MB1	L1	chr11L1MB1115166638	ProperStrand	4	chr11	115169265	115169365	protein_coding	Otop2	intron	ENSMUSG00000050201	ProperStrand	7	1	-inf
chr5	49972055	49979005	LINE	Lx	L1	chr5Lx49978776	NonProperStrand	2	chr15	76652828	76652894	SINE	B1_Mur1	Alu	chr15B1_Mur176652792	NonProperStrand	1	1	-inf
chr17	39845847	39846112	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	101971192	101991906	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	5	-6.3375
chr5	147450679	147453256	LINE	Lx8	L1	chr5Lx8147450588	ProperStrand	3	chr5	147430939	147450672	LTR	MTD	MaLR	chr5MTD147430880	ProperStrand	3	3	-inf
chr6	103365193	103365293	LTR	MTD	MaLR	chr6MTD103365216	ProperStrand	1	chr6	103365665	103365755	LTR	RLTR9A	ERVK	chr6RLTR9A103365541	ProperStrand	1	1	-inf
chrX	101640146	101640252	LTR	ORR1B1	MaLR	chrXORR1B1101640014	ProperStrand	4	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-16.1601
chr7	19633290	19633334	protein_coding	Sympk	intron	ENSMUSG00000023118	NonProperStrand	12	chr6	128226466	128226560	protein_coding	Tead4	intron	ENSMUSG00000030353	ProperStrand	34	1	-16.4752
chr2	29406287	29406316	LINE	L1Md_F2	L1	chr2L1Md_F229406247	ProperStrand	1	chr16	23111320	23111422	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-inf
chr2	50166624	50166761	lincRNA	Gm13483	intron	ENSMUSG00000085862	ProperStrand	8	chr4	134427127	134427144	protein_coding	Rhd	intron	ENSMUSG00000028825	ProperStrand	2	2	-inf
chrX	13661442	13661542	LINE	Lx3B	L1	chrXLx3B13661121	ProperStrand	1	chrX	13660612	13660702	LINE	Lx6	L1	chrXLx613658193	NonProperStrand	2	1	-inf
chr17	62757789	62757889	LINE	L1_Mur3	L1	chr17L1_Mur362757387	NonProperStrand	2	chr17	62757913	62758003	LINE	Lx9	L1	chr17Lx962757866	NonProperStrand	2	2	-inf
chr2	32682900	32682980	protein_coding	Stxbp1	intron	ENSMUSG00000026797	ProperStrand	48	chr15	80934959	80935014	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	1	-10.5162
chr17	39844024	39844059	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr2	73136749	73136794	protein_coding	Cir1	intron	ENSMUSG00000041777	ProperStrand	15	1	-6.7094
chr2	102829375	102829446	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr14	52081843	52084135	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-8.5039
chr17	83379350	83379440	LINE	L1Md_T	L1	chr17L1Md_T83375221	NonProperStrand	23	chr5	123612665	123612765	lincRNA	Gm17627	intron	ENSMUSG00000066418	ProperStrand	58	1	-14.0362
chr3	56597553	56597643	LINE	Lx4A	L1	chr3Lx4A56597458	ProperStrand	1	chr3	56597285	56597385	LTR	MTD	MaLR	chr3MTD56597191	ProperStrand	1	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	72402939	72403007	SINE	B1_Mus1	Alu	chr8B1_Mus172402870	NonProperStrand	1	1	-inf
chr5	105596711	105596778	LINE	L1Md_F2	L1	chr5L1Md_F2105593913	ProperStrand	1	chr17	39847326	39847380	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr10	111478090	111478172	LINE	L1MA7	L1	chr10L1MA7111477858	NonProperStrand	1	chr12	42716594	42716619	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	1	-inf
chr11	6620383	6620443	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	14	chr17	39848197	39848247	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-4.0485
chr15	99976310	99976428	protein_coding	Dip2b	intron	ENSMUSG00000023026	ProperStrand	60	chr4	132311647	132311666	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	ProperStrand	5	1	-17.2161
chr1	71599238	71599289	LTR	RMER19C	ERVK	chr1RMER19C71598754	ProperStrand	1	chr2	125247883	125249179	protein_coding	Fbn1	intron	ENSMUSG00000027204	NonProperStrand	28	1	-inf
chr4	133266868	133266887	protein_coding	Arid1a	intron	ENSMUSG00000007880	NonProperStrand	3	chr4	147064121	147064197	protein_coding	Zfp534	intron	ENSMUSG00000062518	NonProperStrand	13	1	-inf
chr2	131918591	131918727	protein_coding	Slc23a2	intron	ENSMUSG00000027340	ProperStrand	27	chr3	96263084	96263102	tRNA	tRNA750-AsnGTT	.	112918	ProperStrand	2	1	-21.2142
chr9	72076687	72076765	DNA	URR1A	MER1_type	chr9URR1A72076705	ProperStrand	1	chr17	39846453	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847174	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	66275794	66275852	SINE	B3	B2	chr14B366275779	ProperStrand	1	1	-inf
chr2	84624321	84624411	LTR	LTR53	ERVL	chr2LTR5384624198	NonProperStrand	5	chr2	84622024	84624311	SINE	B1_Mus2	Alu	chr2B1_Mus284622040	ProperStrand	1	1	-inf
chr13	5445859	5445959	LINE	L1Md_A	L1	chr13L1Md_A5445158	ProperStrand	1	chr9	19657693	19657783	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr9	8203384	8203474	LINE	Lx7	L1	chr9Lx78202343	NonProperStrand	1	chr9	8203850	8203950	Other	RMER1A	Other	chr9RMER1A8203476	NonProperStrand	1	1	-inf
chr10	28182425	28182495	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	chr15	39618301	39618390	protein_coding	Dpys	intron	ENSMUSG00000022304	NonProperStrand	13	1	-13.2894
chr2	27539864	27539924	protein_coding	Rxra	intron	ENSMUSG00000015846	NonProperStrand	11	chr13	74444572	74444622	protein_coding	Pdcd6	intron	ENSMUSG00000021576	ProperStrand	6	1	-inf
chr17	39847847	39847952	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	134463262	134463297	LTR	MTD	MaLR	chr5MTD134463144	ProperStrand	1	1	-inf
chr17	4082101	4082156	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	32165526	32165584	protein_coding	Dnm1	utr3	ENSMUSG00000026825	NonProperStrand	224	1	-5.0706
chr19	5798096	5798181	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr10	7449942	7450005	protein_coding	Katna1	intron	ENSMUSG00000019794	NonProperStrand	10	1	-8.0211
chr4	147947013	147947085	protein_coding	Exosc10	intron	ENSMUSG00000017264	ProperStrand	19	chr9	123461891	123461947	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.1531
chr3	146419286	146419314	protein_coding	Prkacb	intron	ENSMUSG00000005034	NonProperStrand	52	chr16	23110101	23110236	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	123	1	-10.8690
chr9	74425832	74425932	LTR	MTD	MaLR	chr9MTD74425854	NonProperStrand	1	chr9	74426051	74426141	SINE	B4	B4	chr9B474426050	NonProperStrand	1	1	-inf
chr12	99165096	99165186	LTR	RMER17C	ERVK	chr12RMER17C99165115	ProperStrand	1	chr12	99164844	99164944	SINE	B3A	B2	chr12B3A99164727	NonProperStrand	1	1	-inf
chr5	10734888	10734905	LTR	RMER19C	ERVK	chr5RMER19C10734535	ProperStrand	1	chr3	94871116	94871189	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	NonProperStrand	30	1	-inf
chr14	59368093	59368156	LINE	L1M4	L1	chr14L1M459368035	NonProperStrand	1	chrX	12655575	12655624	protein_coding	Usp9x	intron	ENSMUSG00000031010	NonProperStrand	21	1	-inf
chr3	133109295	133109355	LINE	L1Md_F2	L1	chr3L1Md_F2133109044	NonProperStrand	1	chr4	45036823	45036899	protein_coding	Polr1e	intron	ENSMUSG00000028318	NonProperStrand	4	1	-inf
chr16	33047588	33047652	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr6	134069477	134069551	protein_coding	Etv6	intron	ENSMUSG00000030199	ProperStrand	187	1	-11.4336
chr19	47246774	47246874	LTR	RLTR6-int	ERV1	chr19RLTR6-int47246787	ProperStrand	3	chr19	47246622	47246712	LTR	RMER16-int	ERVK	chr19RMER16-int47246607	ProperStrand	3	3	-inf
chr9	113881698	113889991	protein_coding	Ubp1	intron	ENSMUSG00000009741	ProperStrand	58	chr9	113889993	113890093	protein_coding	Fbxl2	intron	ENSMUSG00000032507	NonProperStrand	56	1	-12.2298
chr19	58843935	58843959	protein_coding	Pnliprp2	intron	ENSMUSG00000025091	NonProperStrand	24	chr5	115490327	115490398	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-11.0077
chr17	39846718	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	35059348	35059444	lincRNA	Gm16984	intron	ENSMUSG00000085962	ProperStrand	3	1	-4.3017
chr12	12702060	12702150	SINE	B4	B4	chr12B412702005	ProperStrand	1	chr12	12702265	12702365	SINE	ID_B1	B4	chr12ID_B112702247	ProperStrand	1	1	-inf
chr13	93482154	93482247	LINE	L1MA8	L1	chr13L1MA893482026	ProperStrand	1	chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	81159117	81159207	Unknown	MurSatRep1	Unknown	chr10MurSatRep181158786	NonProperStrand	3	chr9	123462014	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr9	7999622	7999678	protein_coding-noncoding	Yap1	utr3	ENSMUSG00000053110	ProperStrand	9	chr7	3620937	3621094	protein_coding	Tmc4	intron	ENSMUSG00000019734	ProperStrand	4	1	-inf
chr7	65296420	65296453	LINE	L1Md_T	L1	chr7L1Md_T65293403	NonProperStrand	2	chr17	39846647	39846714	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	140275227	140275265	protein_coding-noncoding	Mafk	utr5	ENSMUSG00000018143	NonProperStrand	2	chr5	140275787	140275873	protein_coding	Mafk	intron	ENSMUSG00000018143	NonProperStrand	6	1	-inf
chr14	109421833	109421933	LINE	L1_Mus2	L1	chr14L1_Mus2109420293	NonProperStrand	1	chr14	75092356	75092446	protein_coding	Htr2a	intron	ENSMUSG00000034997	NonProperStrand	4	1	-inf
chr2	24912074	24912157	protein_coding-noncoding	Nelf	utr5	ENSMUSG00000006476	NonProperStrand	3	chr2	24882425	24882454	protein_coding	Pnpla7	intron	ENSMUSG00000036833	NonProperStrand	78	1	-17.8658
chr17	32153554	32153771	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	chr4	155250838	155250928	protein_coding	Cpsf3l	intron	ENSMUSG00000029034	ProperStrand	5	1	-16.0992
chr1	134614856	134631686	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr13	97190561	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-4.6867
chr6	128838448	128838532	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	chr13	97190552	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.5176
chr13	18723215	18745263	LINE	L1Md_F2	L1	chr13L1Md_F218726599	NonProperStrand	1	chr11	6419519	6419565	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	1	-inf
chr10	39663108	39663223	LTR	RMER17D2	ERVK	chr10RMER17D239662963	NonProperStrand	2	chr17	39847172	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr9	97059635	97059716	LTR	MYSERV16_I-int	ERVK	chr9MYSERV16_I-int97058640	ProperStrand	2	chr13	97190543	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr6	3201509	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	1	-3.4992
chr2	36122269	36122359	LTR	ORR1C2	MaLR	chr2ORR1C236122281	NonProperStrand	1	chr16	11159385	11159485	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	23	1	-inf
chr12	113186649	113186767	SINE	B1_Mur1	Alu	chr12B1_Mur1113186652	NonProperStrand	1	chr8	86667821	86667837	protein_coding	Cc2d1a	intron	ENSMUSG00000036686	NonProperStrand	7	1	-inf
chr17	39847804	39847830	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	31923102	31924580	protein_coding	Fam78a	utr3	ENSMUSG00000050592	ProperStrand	1	1	-inf
chr17	39847562	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	93831930	93832020	LTR	RMER15	ERVL	chrXRMER1593831765	ProperStrand	5	1	-3.2379
chr10	23785753	23785821	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr9	40803618	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.5058
chr16	23111311	23111431	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr17	25374505	25374521	protein_coding	Gnptg	intron	ENSMUSG00000035521	NonProperStrand	1	1	-inf
chr9	107327154	107327173	protein_coding	Cacna2d2	intron	ENSMUSG00000010066	ProperStrand	6	chr2	5472460	5472542	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr13	97492027	97492100	LINE	L1_Rod	L1	chr13L1_Rod97492007	NonProperStrand	7	chr13	97493052	97493085	LINE	L1_Rod	L1	chr13L1_Rod97492375	NonProperStrand	23	1	-18.4679
chr13	40939638	40939699	LTR	MTD	MaLR	chr13MTD40939583	NonProperStrand	1	chr17	39846388	39846449	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	31174443	31174522	lincRNA	2210408F21Rik	intron	ENSMUSG00000087380	NonProperStrand	67	chr6	31166173	31166242	protein_coding	AB041803	intron	ENSMUSG00000044471	ProperStrand	114	1	-10.5112
chr18	15347064	15347083	LINE	L1Md_A	L1	chr18L1Md_A15344878	NonProperStrand	3	chr17	39847178	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr8	107057477	107057524	protein_coding	Nae1	intron	ENSMUSG00000031878	NonProperStrand	10	chr3	9544345	9544387	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-10.1346
chr2	97891077	97891177	LINE	Lx2A	L1	chr2Lx2A97890581	ProperStrand	1	chr2	97891304	97891394	LINE	Lx4B	L1	chr2Lx4B97891305	NonProperStrand	1	1	-inf
chr11	68287175	68287231	protein_coding	Pik3r5	intron	ENSMUSG00000020901	NonProperStrand	75	chr2	91940296	91940619	protein_coding	Phf21a	intron	ENSMUSG00000058318	NonProperStrand	121	1	-10.1652
chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr18	60776439	60776512	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	1	-4.1393
chr2	156161628	156161859	antisense	Gm14252	.	ENSMUSG00000085546	ProperStrand	14	chr18	74900650	74900677	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	68	1	-14.7303
chr7	105862155	105862245	protein_coding	Prkrir	intron	ENSMUSG00000030753	ProperStrand	5	chr5	67284462	67284562	protein_coding	Limch1	intron	ENSMUSG00000037736	ProperStrand	57	2	-inf
chr9	46056130	46056157	Low_complexity	GA-rich	Low_complexity	chr9GA-rich46056055	ProperStrand	1	chr8	72378100	72378232	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	1	-inf
chr10	85392568	85392693	antisense	Ascl4	.	ENSMUSG00000085111	ProperStrand	16	chr10	85458462	85458482	protein_coding	Bpifc	intron	ENSMUSG00000050108	NonProperStrand	43	1	-15.3901
chr17	26631783	26631816	LTR	RLTR11A	ERVK	chr17RLTR11A26631446	NonProperStrand	1	chr17	26632793	26632863	SINE	MIRm	MIR	chr17MIRm26632790	NonProperStrand	2	1	-inf
chr7	28276345	28276380	SINE	ID_B1	B4	chr7ID_B128276292	NonProperStrand	1	chr16	70455033	70455078	protein_coding	Gbe1	intron	ENSMUSG00000022707	ProperStrand	19	1	-inf
chr7	67292879	67292945	LINE	L1_Mur3	L1	chr7L1_Mur367292546	NonProperStrand	1	chr17	70963690	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr13	97129275	97129329	LINE	L1Md_A	L1	chr13L1Md_A97127548	NonProperStrand	10	chr7	13311271	13311340	protein_coding	Vmn2r56	intron	ENSMUSG00000090762	NonProperStrand	118	1	-14.3313
chr13	29062713	29062803	LINE	L1_Mur3	L1	chr13L1_Mur329062477	ProperStrand	1	chr13	29062973	29063073	SINE	B2_Mm1t	B2	chr13B2_Mm1t29062989	ProperStrand	1	1	-inf
chr1	134308734	134308818	SINE	B1_Mm	Alu	chr1B1_Mm134308756	NonProperStrand	2	chr9	110281288	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	2	-inf
chr9	123461822	123461878	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr1	75196209	75196275	protein_coding	Glb1l	exon	ENSMUSG00000026200	NonProperStrand	13	1	-3.8693
chr17	39845390	39845505	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	76110439	76110457	LINE	L1MA5A	L1	chr7L1MA5A76110089	ProperStrand	1	1	-inf
chr5	103737980	103738044	SINE	B1F1	Alu	chr5B1F1103737991	ProperStrand	1	chr5	44087361	44087415	protein_coding	Cc2d2a	intron	ENSMUSG00000039765	NonProperStrand	40	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	75544275	75544297	protein_coding	Ltbp1	intron	ENSMUSG00000001870	NonProperStrand	24	1	-8.6476
chr11	60122386	60122486	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	chr2	130832986	130833076	protein_coding	Atrn	intron	ENSMUSG00000027312	NonProperStrand	36	2	-16.9270
chr19	8723993	8724060	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr11	69600774	69600831	protein_coding	Chrnb1	intron	ENSMUSG00000041189	ProperStrand	8	1	-17.1774
chr19	5947751	5947779	protein_coding	Pola2	intron	ENSMUSG00000024833	ProperStrand	80	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-6.0034
chr4	139477218	139478984	LINE	L1M4	L1	chr4L1M4139477855	NonProperStrand	7	chr4	139479025	139479514	lincRNA	Gm13028	intron	ENSMUSG00000087628	ProperStrand	21	2	-20.2889
chr13	23534216	23534306	LINE	L1MA6	L1	chr13L1MA623534197	ProperStrand	3	chr17	39846360	39848695	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-7.6307
chr2	22744873	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chrX	21079918	21079969	SINE	RSINE1	B4	chrXRSINE121079872	NonProperStrand	1	1	-inf
chr17	47862692	47862738	SINE	B4A	B4	chr17B4A47862691	NonProperStrand	1	chr3	86088105	86088195	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-inf
chr19	5152227	5209035	protein_coding	Pacs1	intron	ENSMUSG00000024855	ProperStrand	45	chr9	123462051	123462179	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.1297
chr17	39847937	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	33158391	33158409	protein_coding	Ogdhl	intron	ENSMUSG00000021913	ProperStrand	1	1	-inf
chrX	12650925	12650990	protein_coding	Usp9x	intron	ENSMUSG00000031010	NonProperStrand	21	chr8	95785053	95785128	protein_coding	Ces1f	intron	ENSMUSG00000031725	ProperStrand	45	1	-14.7355
chr11	3151315	3151405	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	73	chr9	72311400	72311500	protein_coding	Tex9	intron	ENSMUSG00000032219	NonProperStrand	6	4	-inf
chr1	66159293	66159383	LINE	L1_Rod	L1	chr1L1_Rod66159289	NonProperStrand	1	chr1	66159114	66159214	LINE	Lx4A	L1	chr1Lx4A66158606	NonProperStrand	1	1	-inf
chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	58921215	58921249	LTR	MLT1A	MaLR	chr9MLT1A58921180	ProperStrand	1	1	-inf
chr10	17124521	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr17	28061792	28061809	protein_coding	Anks1	intron	ENSMUSG00000024219	NonProperStrand	25	1	-11.5787
chr18	48782372	48782389	LINE	L1Md_F2	L1	chr18L1Md_F248782324	NonProperStrand	1	chr16	22125639	22125739	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-inf
chr4	87947105	87947163	protein_coding	BC057079	intron	ENSMUSG00000038368	NonProperStrand	76	chr13	97190545	97190586	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6660
chr12	110492775	110492851	LINE	L1M2	L1	chr12L1M2110492499	ProperStrand	1	chr12	110493224	110493307	LINE	L1M2	L1	chr12L1M2110493134	ProperStrand	2	1	-inf
chr13	112578192	112578273	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr5	124404250	124404320	protein_coding	Ccdc62	exon	ENSMUSG00000061882	NonProperStrand	30	1	-5.5489
chr8	127143531	127143621	SINE	B2_Mm2	B2	chr8B2_Mm2127143430	NonProperStrand	2	chr8	127143654	127143754	SINE	B4	B4	chr8B4127143632	NonProperStrand	2	2	-inf
chr2	95276610	95276700	LINE	L1_Mm	L1	chr2L1_Mm95276464	ProperStrand	1	chr2	95276290	95276390	LINE	L1_Mus2	L1	chr2L1_Mus295275920	ProperStrand	1	1	-inf
chr11	109011645	109011987	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	123461802	123462184	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	53	-inf
chr2	20929510	20929600	LTR	MTE-int	MaLR	chr2MTE-int20929352	ProperStrand	1	chr11	106572196	106572296	protein_coding	Pecam1	intron	ENSMUSG00000020717	ProperStrand	95	1	-inf
chr8	123183302	123183370	protein_coding	Cox4nb	intron	ENSMUSG00000031819	ProperStrand	2	chr19	12011636	12011677	protein_coding	Patl1	intron	ENSMUSG00000046139	NonProperStrand	6	1	-inf
chr13	71184133	71184233	LINE	L1M4b	L1	chr13L1M4b71184140	ProperStrand	1	chr13	71183968	71184058	LTR	ORR1C1	MaLR	chr13ORR1C171183704	NonProperStrand	1	1	-inf
chr9	59330987	59331107	protein_coding	Arih1	intron	ENSMUSG00000025234	ProperStrand	6	chr5	53556810	53556836	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	1	-15.0279
chr6	39513988	39514078	LTR	MTEb	MaLR	chr6MTEb39513974	ProperStrand	1	chr15	99283874	99283974	protein_coding	Nckap5l	intron	ENSMUSG00000023009	NonProperStrand	3	1	-inf
chr8	70402411	70427678	protein_coding-noncoding	Psd3	utr3	ENSMUSG00000030465	ProperStrand	2	chr8	70402615	70427497	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	2	-inf
chr17	88451949	88452065	protein_coding	Fbxo11	intron	ENSMUSG00000005371	NonProperStrand	15	chr15	99180891	99180918	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	1	-13.8589
chr10	128048068	128048336	LINE	Lx7	L1	chr10Lx7128047532	ProperStrand	18	chr17	39847611	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-3.5412
chr17	39843923	39847867	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr2	154884327	154884360	SINE	B2_Mm1a	B2	chr2B2_Mm1a154884289	NonProperStrand	5	1	-9.0377
chr1	118967400	118967517	LINE	L1_Mm	L1	chr1L1_Mm118967282	NonProperStrand	2	chr1	118967053	118967091	LINE	L1_Mus2	L1	chr1L1_Mus2118966327	ProperStrand	3	2	-inf
chr12	32956535	32956627	LINE	L1_Mur1	L1	chr12L1_Mur132954356	NonProperStrand	2	chr2	5379293	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr4	70219045	70219106	LTR	ORR1C2-int	MaLR	chr4ORR1C2-int70218818	NonProperStrand	1	chr4	70221285	70221374	LTR	RMER6A	ERVK	chr4RMER6A70221217	NonProperStrand	1	1	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	75003871	75003887	Simple_repeat	(TATG)n	Simple_repeat	chr13(TATG)n75003837	ProperStrand	1	1	-inf
chr1	93485285	93485370	SINE	B4A	B4	chr1B4A93485278	ProperStrand	1	chr1	93486034	93486066	Simple_repeat	(GAAA)n	Simple_repeat	chr1(GAAA)n93485991	ProperStrand	1	1	-inf
chr8	78091174	78091274	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	chr16	11904449	11904539	protein_coding	Cpped1	intron	ENSMUSG00000065979	ProperStrand	72	1	-7.5685
chr17	39848250	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	106066809	106066844	protein_coding-noncoding	Ccdc47	utr3	ENSMUSG00000078622	NonProperStrand	17	3	-9.2628
chr5	146261141	146261183	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr14	45285963	45286075	protein_coding	Gm8257	intron	ENSMUSG00000079265	ProperStrand	33	1	-6.2373
chr14	55634362	55634378	protein_coding	Ngdn	utr5	ENSMUSG00000022204	NonProperStrand	18	chr8	95781437	95781532	protein_coding	Ces1f	intron	ENSMUSG00000031725	ProperStrand	45	1	-15.0491
chr5	143023672	143023762	protein_coding	Radil	intron	ENSMUSG00000029576	ProperStrand	24	chr4	11981671	11981771	protein_coding	Tmem67	intron	ENSMUSG00000049488	NonProperStrand	13	2	-inf
chr6	49236499	49236592	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr5	114852013	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-6.6291
chr10	65857884	65857902	Simple_repeat	(CAGAGA)n	Simple_repeat	chr10(CAGAGA)n65857850	NonProperStrand	1	chr3	138453782	138454682	protein_coding	Tspan5	intron	ENSMUSG00000028152	ProperStrand	84	1	-inf
chr9	110237938	110238010	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr2	156082565	156082637	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	96	1	-6.6297
chr13	108061020	108061052	LINE	L1_Mur3	L1	chr13L1_Mur3108060929	NonProperStrand	8	chr13	108063734	108063804	LTR	MTB-int	MaLR	chr13MTB-int108063284	NonProperStrand	2	1	-inf
chr4	74397865	74397954	LINE	Lx7	L1	chr4Lx774397486	NonProperStrand	1	chr4	74343465	74343506	LTR	MTA_Mm	MaLR	chr4MTA_Mm74343401	NonProperStrand	1	1	-inf
chr6	30304303	30304403	SINE	B1_Mur1	Alu	chr6B1_Mur130304255	NonProperStrand	2	chr6	30304413	30304503	SINE	B1_Mus2	Alu	chr6B1_Mus230304434	NonProperStrand	2	2	-inf
chr17	39847803	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	138193330	138193381	protein_coding-noncoding	Tsc22d4	utr5	ENSMUSG00000029723	ProperStrand	1	1	-inf
chr14	112955181	112955230	SINE	B1_Mus2	Alu	chr14B1_Mus2112955160	NonProperStrand	1	chr16	28919338	28919439	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	1	-inf
chr2	181372056	181372083	protein_coding	Prpf6	intron	ENSMUSG00000002455	ProperStrand	86	chr10	79618103	79618120	protein_coding	Midn	exon	ENSMUSG00000035621	NonProperStrand	3	1	-17.6885
chrX	159538840	159538930	LTR	MER68	ERVL	chrXMER68159538810	NonProperStrand	4	chrX	159538947	159539047	SINE	RSINE1	B4	chrXRSINE1159538954	NonProperStrand	4	4	-inf
chr4	43492778	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr8	121597428	121597554	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	1	-6.1427
chr12	99645572	99645672	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr2	5005104	5006426	LTR	ORR1A4	MaLR	chr2ORR1A45006332	NonProperStrand	1	1	-inf
chr13	19087856	19087877	protein_coding	Amph	intron	ENSMUSG00000021314	ProperStrand	15	chr1	63591066	63591175	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-10.8724
chr4	147483763	147483853	protein_coding	2610109H07Rik	intron	ENSMUSG00000029005	NonProperStrand	12	chr4	146916344	146916444	protein_coding	Gm16503	utr3	ENSMUSG00000078160	NonProperStrand	4	2	-inf
chr11	13859848	13859948	LINE	L1VL1	L1	chr11L1VL113859546	NonProperStrand	1	chr13	29896430	29896520	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	1	-inf
chr10	81179230	81179368	LTR	ORR1E-int	MaLR	chr10ORR1E-int81179217	ProperStrand	3	chr2	62673607	62673636	protein_coding	Kcnh7	intron	ENSMUSG00000059742	NonProperStrand	29	1	-19.5983
chr7	81343262	81343362	LTR	MTC	MaLR	chr7MTC81342988	NonProperStrand	5	chr7	81343347	81343437	SINE	B4	B4	chr7B481343372	NonProperStrand	2	1	-23.2669
chr13	109681566	109681666	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr7	104862139	104862229	protein_coding	Clns1a	intron	ENSMUSG00000025439	NonProperStrand	2	1	-15.4419
chr12	110544125	110544226	LINE	Lx	L1	chr12Lx110542426	ProperStrand	5	chr15	88863292	88863382	protein_coding	Mov10l1	intron	ENSMUSG00000015365	ProperStrand	151	1	-15.3563
chr12	84371534	84372145	protein_coding	Dpf3	intron	ENSMUSG00000021221	NonProperStrand	34	chr10	39640583	39640667	protein_coding	2010001E11Rik	utr3	ENSMUSG00000039339	ProperStrand	3	1	-19.2628
chr14	118496370	118496475	LINE	L1_Mus3	L1	chr14L1_Mus3118495163	NonProperStrand	1	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	115497412	115497530	SINE	B1_Mm	Alu	chr11B1_Mm115497435	ProperStrand	3	chr5	97126065	97126085	protein_coding	Fras1	intron	ENSMUSG00000034687	ProperStrand	39	1	-19.1271
chr13	44869603	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr19	10859163	10859224	protein_coding	A430093F15Rik	intron	ENSMUSG00000067577	NonProperStrand	15	1	-7.2385
chr10	17124520	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.8492
chr11	109011646	109011686	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	66379088	66379198	protein_coding	9130230L23Rik	utr3	ENSMUSG00000054598	ProperStrand	75	1	-5.6614
chr4	140584434	140584524	protein_coding-noncoding	Crocc	utr3	ENSMUSG00000040860	ProperStrand	1	chr4	140584319	140584419	protein_coding	Crocc	exon	ENSMUSG00000040860	ProperStrand	30	1	-inf
chr14	21505921	21506054	protein_coding	Sec24c	intron	ENSMUSG00000039367	ProperStrand	81	chr14	21483312	21483331	protein_coding	Synpo2l	intron	ENSMUSG00000039376	NonProperStrand	44	1	-12.0444
chr13	54101020	54101055	LINE	L1MDa	L1	chr13L1MDa54100990	ProperStrand	2	chr13	54099477	54099502	LINE	Lx8	L1	chr13Lx854099178	ProperStrand	6	2	-inf
chr17	39847172	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	40994029	40994045	LTR	MTA_Mm	MaLR	chr19MTA_Mm40993963	ProperStrand	1	1	-inf
chr14	75352944	75352985	DNA	Charlie18a	MER1_type	chr14Charlie18a75352829	ProperStrand	1	chr17	39846750	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846758	39846947	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	34197369	34236357	protein_coding	Ankrd22	utr3	ENSMUSG00000024774	NonProperStrand	9	2	-3.9140
chr10	53967863	53967963	LINE	L1_Mur1	L1	chr10L1_Mur153967587	NonProperStrand	1	chr10	53968052	53968142	SINE	B3	B2	chr10B353967988	ProperStrand	1	1	-inf
chr12	51603341	51603388	protein_coding	Prkd1	intron	ENSMUSG00000002688	NonProperStrand	11	chr6	128799448	128799486	protein_coding	BC035044	utr3	ENSMUSG00000090164	ProperStrand	6	1	-inf
chr10	41453291	41453342	protein_coding	Cep57l1	intron	ENSMUSG00000019813	NonProperStrand	53	chr10	20158299	20158401	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	1	-8.9703
chr8	83718631	83718663	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int83714337	ProperStrand	6	chr6	4932939	4932981	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-13.8648
chr8	95747048	95747084	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.8024
chr14	59561300	59561405	LTR	RMER19C	ERVK	chr14RMER19C59560833	ProperStrand	3	chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr7	80338890	80339028	LTR	RMER19C	ERVK	chr7RMER19C80338639	ProperStrand	1	chr2	142683086	142683109	protein_coding	Kif16b	exon	ENSMUSG00000038844	ProperStrand	33	1	-inf
chr1	182841968	182842092	LTR	ORR1C2	MaLR	chr1ORR1C2182841999	NonProperStrand	1	chr8	72366893	72366919	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	1	-inf
chr11	93909858	93909958	protein_coding-noncoding	Spag9	utr5	ENSMUSG00000020859	ProperStrand	5	chr11	93909702	93909792	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	5	-inf
chr13	119706562	119706665	LINE	L1Md_F2	L1	chr13L1Md_F2119706478	NonProperStrand	24	chr9	45518626	45518667	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	1	-11.7526
chr3	72675026	72675043	LINE	Lx3_Mus	L1	chr3Lx3_Mus72672666	ProperStrand	1	chr12	3912211	3912327	protein_coding	Dnmt3a	utr3	ENSMUSG00000020661	ProperStrand	101	1	-inf
chr1	163513713	163513803	LINE	Lx6	L1	chr1Lx6163513124	ProperStrand	1	chr1	163513900	163514000	LINE	Lx6	L1	chr1Lx6163513732	ProperStrand	1	1	-inf
chr17	39847318	39847379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	15924910	15924975	LTR	RMER10B	ERVL	chr19RMER10B15924823	ProperStrand	1	1	-inf
chr11	69667833	69667905	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr14	14111585	14111635	protein_coding	Gm5087	intron	ENSMUSG00000051729	ProperStrand	16	1	-11.7005
chr17	70963742	70963789	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	45375648	45375745	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	1	-4.1597
chr15	12127574	12127664	LINE	Lx7	L1	chr15Lx712127490	ProperStrand	1	chr15	12127317	12127417	SINE	ID_B1	B4	chr15ID_B112127295	ProperStrand	1	1	-inf
chr12	37698057	37698157	LINE	Lx2B	L1	chr12Lx2B37697652	NonProperStrand	1	chr12	37698237	37698327	LINE	Lx2B	L1	chr12Lx2B37698059	NonProperStrand	1	1	-inf
chr18	61257017	61257033	SINE	B4A	B4	chr18B4A61257010	NonProperStrand	1	chr1	131214503	131214590	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-inf
chr15	86026179	86026255	SINE	B2_Mm2	B2	chr15B2_Mm286026039	ProperStrand	2	chr2	35274173	35274254	protein_coding	Ggta1	intron	ENSMUSG00000035778	NonProperStrand	8	2	-inf
chr17	39846583	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	57263267	57263294	Other	RMER1C	Other	chr17RMER1C57263166	NonProperStrand	2	1	-5.3533
chr11	69747125	69747185	SINE	B1_Mus2	Alu	chr11B1_Mus269747100	NonProperStrand	2	chr11	69746900	69746975	SINE	B2_Mm2	B2	chr11B2_Mm269746879	ProperStrand	1	1	-inf
chr11	56222866	56222956	Simple_repeat	(TCCA)n	Simple_repeat	chr11(TCCA)n56222778	ProperStrand	1	chr11	56222992	56223092	Simple_repeat	(TCCA)n	Simple_repeat	chr11(TCCA)n56222988	ProperStrand	1	1	-inf
chr4	40261022	40261040	lincRNA	4930509K18Rik	intron	ENSMUSG00000087137	ProperStrand	2	chr9	101101785	101101932	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	ProperStrand	13	1	-inf
chr12	78350926	78351000	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr14	27402751	27402804	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-5.8316
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	51880729	51880846	protein_coding	Ppargc1a	intron	ENSMUSG00000029167	ProperStrand	1	1	-inf
chr5	146261162	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	91726741	91726862	protein_coding	Cryzl1	intron	ENSMUSG00000058240	ProperStrand	22	1	-7.0496
chr6	88510903	88510972	protein_coding	Kbtbd12	intron	ENSMUSG00000033182	ProperStrand	28	chr13	44869601	44869672	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.9804
chr12	64850365	64850455	LINE	L1_Mus3	L1	chr12L1_Mus364850317	ProperStrand	1	chr2	130872943	130873043	SINE	B3A	B2	chr2B3A130872947	ProperStrand	6	1	-inf
chr6	112840295	112840362	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	95	chr8	80821578	80821655	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-6.3753
chr15	83149758	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	chr5	7177801	7177827	snRNA	ENSMUSG00000064851_U12	.	ENSMUSG00000064851	ProperStrand	1	1	-inf
chr15	25932129	25932151	SINE	B3	B2	chr15B325932041	ProperStrand	1	chr9	123461935	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	160754664	160754744	LTR	MLT1B	MaLR	chr2MLT1B160754494	NonProperStrand	1	chr3	34663485	34663552	SINE	B1_Mus1	Alu	chr3B1_Mus134663406	NonProperStrand	1	1	-inf
chrX	20987178	20987248	LINE	L1_Mus3	L1	chrXL1_Mus320987094	NonProperStrand	1	chr17	39846395	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	9617665	9617717	DNA	MER2	MER2_type	chr4MER29617672	ProperStrand	1	chr17	39847469	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	82231403	82231475	Simple_repeat	(CATA)n	Simple_repeat	chr15(CATA)n82231237	NonProperStrand	1	chr11	67466592	67466655	protein_coding	Gas7	intron	ENSMUSG00000033066	ProperStrand	38	1	-inf
chr2	84590019	84590072	SINE	PB1D10	Alu	chr2PB1D1084590028	ProperStrand	1	chr17	45655494	45655543	protein_coding	Aars2	exon	ENSMUSG00000023938	NonProperStrand	1	1	-inf
chr13	9834324	9834518	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr9	56223573	56223772	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	2	-9.1709
chr15	11993838	11996006	LTR	MLT1K	MaLR	chr15MLT1K11995935	NonProperStrand	1	chr17	39846462	39846512	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	108925320	108925448	LINE	Lx8	L1	chr12Lx8108925244	NonProperStrand	17	chr9	103577598	103577624	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-12.9272
chr11	116852253	116852586	SINE	B2_Mm2	B2	chr11B2_Mm2116852159	ProperStrand	11	chr13	97190547	97190586	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.5318
chr17	11656521	11656540	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr4	151822438	151822551	protein_coding	Kcnab2	intron	ENSMUSG00000028931	ProperStrand	216	1	-7.1874
chr12	48889675	48889775	LTR	MurERV4_19-int	ERVK	chr12MurERV4_19-int48889033	NonProperStrand	1	chr12	51528091	51528181	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	1	-inf
chr12	80226238	80227748	LTR	MERVL-int	ERVL	chr12MERVL-int80224802	ProperStrand	30	chr12	80233794	80235146	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	2	-17.7789
chr2	57340071	57340096	LINE	Lx	L1	chr2Lx57339543	ProperStrand	2	chr17	28026473	28026590	protein_coding	Uhrf1bp1	intron	ENSMUSG00000039512	ProperStrand	171	1	-17.3956
chr17	39847944	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	166914084	166914103	LTR	MLT1F	MaLR	chr2MLT1F166914025	NonProperStrand	1	1	-inf
chr17	39847554	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	97098784	97098806	LTR	MTEa	MaLR	chr9MTEa97098497	ProperStrand	1	1	-inf
chr15	12578469	12578569	protein_coding	Pdzd2	intron	ENSMUSG00000022197	ProperStrand	76	chr11	107223143	107223233	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-8.2611
chr17	17031333	17031404	LINE	Lx5	L1	chr17Lx517031066	NonProperStrand	1	chr17	39846353	39846433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	128040903	128040993	DNA	RCHARR1	MER1_type	chr10RCHARR1128040602	NonProperStrand	4	chr10	128041014	128041114	SINE	ID_B1	B4	chr10ID_B1128041026	ProperStrand	2	2	-inf
chr17	39847976	39848055	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	33943023	33943092	protein_coding	Fam53a	utr3	ENSMUSG00000037339	NonProperStrand	4	1	-3.7035
chr12	18944072	18944172	LTR	RLTR13C2	ERVK	chr12RLTR13C218943667	ProperStrand	1	chr12	23532049	23532139	LTR	RLTR6-int	ERV1	chr12RLTR6-int23525430	ProperStrand	1	1	-inf
chr17	39847474	39847514	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr9	123461943	123462023	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	1	-13.9276
chr2	9987153	9987243	protein_coding	Atp5c1	intron	ENSMUSG00000025781	ProperStrand	8	chr3	66908539	66908639	protein_coding	Rsrc1	intron	ENSMUSG00000034544	NonProperStrand	7	1	-20.8338
chr1	122357184	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr8	3613460	3613664	protein_coding	Xab2	exon	ENSMUSG00000019470	ProperStrand	13	2	-19.5325
chr19	7034757	7035593	protein_coding	Plcb3	intron	ENSMUSG00000024960	ProperStrand	22	chr9	44210126	44210156	protein_coding	Slc37a4	intron	ENSMUSG00000032114	NonProperStrand	1	1	-inf
chr17	39847277	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	28720312	28720424	protein_coding	Lhfpl5	utr3	ENSMUSG00000062252	ProperStrand	17	2	-3.7154
chr4	134473525	134473580	SINE	B1_Mm	Alu	chr4B1_Mm134473450	NonProperStrand	4	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-18.3525
chr11	88645059	88645098	LTR	MLT1A	MaLR	chr11MLT1A88645058	ProperStrand	2	chr17	39847080	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr4	3835229	3835521	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr4	137642615	137642705	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-7.9366
chr11	5431168	5431214	protein_coding	Ccdc117	utr3	ENSMUSG00000020482	ProperStrand	26	chr5	74064558	74064594	protein_coding	Spata18	intron	ENSMUSG00000029155	NonProperStrand	27	1	-15.3443
chr15	95848730	95848830	LINE	L1MA4A	L1	chr15L1MA4A95848721	ProperStrand	3	chr15	95848627	95848717	LINE	L1MD	L1	chr15L1MD95848556	ProperStrand	3	3	-inf
chr3	14847258	14847358	LINE	L1M2	L1	chr3L1M214846915	ProperStrand	1	chr3	14847656	14847746	LINE	L1M2	L1	chr3L1M214847516	ProperStrand	1	1	-inf
chr5	33531565	33531635	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr5	33527103	33527178	LTR	RLTR10	ERVK	chr5RLTR1033527106	NonProperStrand	14	1	-13.9779
chr4	44137510	44137607	LINE	Lx8	L1	chr4Lx844137470	ProperStrand	1	chr9	123462082	123462129	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	125162323	125162508	SINE	B3	B2	chr6B3125162279	ProperStrand	16	chr17	30282235	30282325	protein_coding	Zfand3	intron	ENSMUSG00000044477	NonProperStrand	157	6	-inf
chr6	92183908	92183967	LINE	L1Md_F2	L1	chr6L1Md_F292183852	NonProperStrand	1	chr2	128624970	128627184	protein_coding	Mertk	exon	ENSMUSG00000014361	NonProperStrand	15	1	-inf
chr5	8154920	8154962	protein_coding	Adam22	intron	ENSMUSG00000040537	ProperStrand	77	chr17	34997903	34997935	protein_coding	Cfb	intron	ENSMUSG00000090231	ProperStrand	14	1	-14.4854
chr3	142344659	142344735	LTR	MMETn-int	ERVK	chr3MMETn-int142343280	ProperStrand	2	chr9	123462082	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr9	122859416	122859462	protein_coding	1110059G10Rik	intron	ENSMUSG00000032551	ProperStrand	14	chr7	48822708	48824677	protein_coding	Gm6871	intron	ENSMUSG00000090744	NonProperStrand	10	1	-18.4132
chr6	38793340	38793399	protein_coding	Hipk2	intron	ENSMUSG00000061436	ProperStrand	80	chr16	11358963	11359036	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	1	-11.1337
chr11	109011657	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	89337676	89337695	protein_coding	Gm8607	intron	ENSMUSG00000092138	NonProperStrand	5	1	-11.2339
chr12	54696780	54696886	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr13	97190544	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-6.0569
chr17	39846353	39846395	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	107219378	107219480	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int107218996	ProperStrand	3	1	-4.3017
chrX	133769695	133769795	LTR	RMER4A	ERVK	chrXRMER4A133769643	NonProperStrand	1	chrX	133769476	133769566	SINE	B3A	B2	chrXB3A133769456	NonProperStrand	1	1	-inf
chr2	60781948	60782008	protein_coding	Rbms1	intron	ENSMUSG00000026970	ProperStrand	24	chr9	72689993	72690049	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	2	-16.6010
chr17	78947238	78947338	protein_coding	Vit	intron	ENSMUSG00000024076	ProperStrand	15	chr14	64697003	64697093	protein_coding	Prss55	intron	ENSMUSG00000034623	NonProperStrand	18	2	-inf
chr2	22744856	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	35981717	35981787	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	1	-4.9503
chr17	39847207	39847234	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	68540222	68540242	pseudogene	Gm10040	.	ENSMUSG00000058360	ProperStrand	9	1	-3.1539
chr15	25393174	25393225	LTR	MTB_Mm	MaLR	chr15MTB_Mm25392856	NonProperStrand	1	chr17	39846755	39846816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847511	39847541	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	127412796	127412816	protein_coding	Gnpat	intron	ENSMUSG00000031985	ProperStrand	5	1	-3.2379
chr2	177082187	177082287	LINE	L1Md_F2	L1	chr2L1Md_F2177082198	NonProperStrand	5	chr2	177082102	177082192	SINE	B1_Mus1	Alu	chr2B1_Mus1177082025	NonProperStrand	1	1	-inf
chr8	91643784	91643867	LINE	Lx8	L1	chr8Lx891643196	ProperStrand	8	chr13	23684595	23684666	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	NonProperStrand	15	1	-19.1188
chr11	120897081	120897181	antisense	Gm11775	.	ENSMUSG00000086835	NonProperStrand	7	chr9	123462058	123462149	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr11	109011792	109011872	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	11629212	11758244	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	2	-3.9952
chr6	3201470	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	116434331	116434394	protein_coding	Ube2o	intron	ENSMUSG00000020802	NonProperStrand	55	1	-3.0510
chr17	39848165	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	85843237	85843263	protein_coding	Elmod2	intron	ENSMUSG00000035151	NonProperStrand	47	2	-3.4487
chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	2	-15.4935
chr17	39846807	39846839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	120241947	120243845	SINE	B1_Mm	Alu	chr1B1_Mm120243742	NonProperStrand	1	1	-inf
chr16	91906867	91908406	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	chr2	121170858	121170999	protein_coding	Ppip5k1	intron	ENSMUSG00000033526	ProperStrand	5	1	-15.3943
chr2	7615950	7616050	LINE	Lx6	L1	chr2Lx67614524	NonProperStrand	1	chr2	7616345	7616435	Low_complexity	CT-rich	Low_complexity	chr2CT-rich7616358	NonProperStrand	1	1	-inf
chr1	111632984	111633074	LTR	MYSERV16_I-int	ERVK	chr1MYSERV16_I-int111632117	ProperStrand	1	chr1	111633305	111633405	LTR	RLTR20D	ERVK	chr1RLTR20D111633297	ProperStrand	1	1	-inf
chr14	121047709	121047797	LINE	L1Md_F2	L1	chr14L1Md_F2121042531	NonProperStrand	6	chr14	121053144	121053221	LTR	RMER15	ERVL	chr14RMER15121053079	NonProperStrand	2	2	-inf
chr15	34440790	34440860	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	chr11	68322322	68322394	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-11.1485
chr6	29415261	29415352	SINE	B1_Mur3	Alu	chr6B1_Mur329415256	NonProperStrand	6	chr6	29415355	29415455	SINE	B4	B4	chr6B429415262	NonProperStrand	6	6	-inf
chr8	85050206	85050276	LINE	L1Md_A	L1	chr8L1Md_A85049904	NonProperStrand	3	chr6	144959905	144959965	protein_coding	Bcat1	intron	ENSMUSG00000030268	ProperStrand	35	1	-19.1629
chr13	108144028	108144049	LINE	L1Md_F2	L1	chr13L1Md_F2108138655	ProperStrand	5	chr13	108144231	108144303	LINE	L1Md_T	L1	chr13L1Md_T108144155	ProperStrand	4	1	-inf
chr17	39845642	39845682	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	49194110	49194160	LTR	RLTR18	ERVK	chr2RLTR1849194044	NonProperStrand	1	1	-inf
chr13	97190561	97190613	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr15	83149717	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-3.5311
chr15	9192737	9192765	LTR	MTA_Mm	MaLR	chr15MTA_Mm9192583	NonProperStrand	1	chr8	122575589	122575651	protein_coding	Crispld2	utr3	ENSMUSG00000031825	NonProperStrand	122	1	-inf
chr13	64274273	64274309	protein_coding	Habp4	intron	ENSMUSG00000021476	NonProperStrand	9	chr9	95862881	95862928	protein_coding	Xrn1	intron	ENSMUSG00000032410	ProperStrand	28	1	-17.4330
chr2	4926122	4926222	protein_coding-noncoding	Mcm10	utr3	ENSMUSG00000026669	NonProperStrand	1	chr2	4926035	4926125	protein_coding	Mcm10	exon	ENSMUSG00000026669	NonProperStrand	4	1	-inf
chr16	23108592	23111866	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr16	23108592	23113394	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	123	30	-inf
chr5	119835651	119835751	LTR	ORR1E	MaLR	chr5ORR1E119835629	ProperStrand	1	chr5	120049317	120049407	SINE	B1F	Alu	chr5B1F120049255	ProperStrand	1	1	-inf
chr3	28300781	28300826	protein_coding	Tnik	intron	ENSMUSG00000027692	ProperStrand	40	chr9	96585432	96585534	protein_coding	Zbtb38	utr3	ENSMUSG00000040433	ProperStrand	17	1	-15.4059
chr18	60049551	60049641	LINE	L1MA7	L1	chr18L1MA760049053	ProperStrand	1	chr18	60049743	60049843	SINE	B4A	B4	chr18B4A60049724	ProperStrand	1	1	-inf
chr3	105946479	105946584	LINE	L1Md_F	L1	chr3L1Md_F105946239	ProperStrand	2	chr9	123461966	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr11	113901597	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	chr16	32389246	32389273	protein_coding	Ubxn7	utr3	ENSMUSG00000053774	ProperStrand	53	1	-10.7043
chr5	122987844	122987927	SINE	ID	ID	chr5ID122987829	NonProperStrand	1	chr5	122987942	122988008	SINE	PB1D10	Alu	chr5PB1D10122987907	NonProperStrand	1	1	-inf
chr15	62212791	62212837	LTR	ORR1B1	MaLR	chr15ORR1B162212502	NonProperStrand	2	chr3	86138053	86138486	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-18.6200
chr4	153722192	153722209	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	43	chr17	30166331	30166406	protein_coding	Zfand3	intron	ENSMUSG00000044477	ProperStrand	97	1	-11.7290
chr8	86908173	86908249	LINE	Lx7	L1	chr8Lx786905168	NonProperStrand	1	chr8	86908829	86908895	LINE	Lx7	L1	chr8Lx786908598	NonProperStrand	1	1	-inf
chr12	9510998	9511098	LTR	MERVL-int	ERVL	chr12MERVL-int9510964	NonProperStrand	1	chr12	9510757	9510847	LTR	MT2_Mm	ERVL	chr12MT2_Mm9510341	NonProperStrand	1	1	-inf
chr14	12493840	12493861	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	30	chr15	80215667	80215697	protein_coding	Cacna1i	intron	ENSMUSG00000022416	NonProperStrand	8	1	-17.5308
chr10	82403668	82403761	LTR	IAPEz-int	ERVK	chr10IAPEz-int82403467	ProperStrand	2	chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	48875738	48875844	protein_coding	Peli2	exon	ENSMUSG00000021846	NonProperStrand	2	2	-inf
chr8	127501110	127501210	LINE	Lx8	L1	chr8Lx8127501116	ProperStrand	1	chr8	127501018	127501108	SINE	B1_Mur1	Alu	chr8B1_Mur1127501007	NonProperStrand	1	1	-inf
chr2	59821591	59821644	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	chr6	32889852	32889957	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-7.6600
chr11	77843647	77845461	lincRNA	A030003K02Rik	intron	ENSMUSG00000087050	NonProperStrand	1	chr11	77843134	77843519	protein_coding	Phf12	utr3	ENSMUSG00000037791	ProperStrand	154	1	-inf
chr18	38588679	38588711	protein_coding	Ndfip1	intron	ENSMUSG00000024425	NonProperStrand	104	chr1	72212893	72212963	protein_coding	Mreg	intron	ENSMUSG00000039395	ProperStrand	8	1	-15.0599
chr2	58083752	58083773	LINE	L1_Mus3	L1	chr2L1_Mus358081863	ProperStrand	8	chr17	39847440	39847956	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-4.3369
chr3	111084378	111084468	LINE	L1Md_F2	L1	chr3L1Md_F2111084172	ProperStrand	1	chr3	111084579	111084679	LINE	Lx	L1	chr3Lx111084456	NonProperStrand	1	1	-inf
chr11	69669692	69669735	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr5	107904561	107904624	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-7.4584
chr1	118501335	118502858	LTR	RLTR25A	ERVK	chr1RLTR25A118501026	ProperStrand	1	chr1	118508874	118508939	LTR	RMER17A	ERVK	chr1RMER17A118508859	NonProperStrand	1	1	-inf
chr19	43524467	43524504	protein_coding	Cnnm1	intron	ENSMUSG00000025189	NonProperStrand	10	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.0770
chr15	85858696	85858766	protein_coding	Celsr1	intron	ENSMUSG00000016028	NonProperStrand	18	chr18	35884916	35884975	protein_coding	1700066B19Rik	intron	ENSMUSG00000073598	NonProperStrand	5	1	-19.9608
chr2	72336090	72336172	LTR	MLT1B	MaLR	chr2MLT1B72335992	NonProperStrand	1	chr1	63048432	63048488	protein_coding	Ino80d	intron	ENSMUSG00000040865	ProperStrand	58	1	-inf
chr11	109011789	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	35981639	35981660	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-4.0456
chrX	68229317	68229417	LTR	MLT2B1	ERVL	chrXMLT2B168229235	NonProperStrand	1	chrX	68229687	68229777	LTR	ORR1E	MaLR	chrXORR1E68229556	ProperStrand	1	1	-inf
chr4	43492783	43492877	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr1	176788179	176788235	protein_coding	Grem2	intron	ENSMUSG00000050069	ProperStrand	22	1	-9.1117
chr13	98789737	98789764	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr6	119570588	119570620	protein_coding	Erc1	intron	ENSMUSG00000030172	ProperStrand	98	1	-9.3372
chr6	3201481	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	19709134	19709254	protein_coding	Fbxo46	intron	ENSMUSG00000050428	NonProperStrand	48	1	-3.2972
chr2	173263300	173263408	SINE	B3	B2	chr2B3173263203	NonProperStrand	2	chr8	121579214	121579243	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	1	-16.1024
chr13	97131220	97131933	LINE	L1Md_A	L1	chr13L1Md_A97127548	ProperStrand	4	chr17	39846962	39847011	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr4	3834941	3835001	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr1	87719519	87719590	protein_coding	Cab39	intron	ENSMUSG00000036707	ProperStrand	38	1	-12.9465
chr15	40486872	40486889	protein_coding	Zfpm2	utr5	ENSMUSG00000022306	ProperStrand	10	chr9	123462076	123462175	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr11	115578801	115578845	SINE	B3	B2	chr11B3115578736	ProperStrand	6	chr4	32768825	32770889	protein_coding	Mdn1	intron	ENSMUSG00000058006	ProperStrand	53	1	-17.0058
chr5	144123469	144123543	protein_coding	Grid2ip	intron	ENSMUSG00000010825	ProperStrand	61	chr14	47653047	47653084	protein_coding	Samd4	intron	ENSMUSG00000021838	ProperStrand	53	2	-18.6908
chr9	78575529	78575629	LINE	L1MB3	L1	chr9L1MB378575502	ProperStrand	5	chr9	78575648	78575738	SINE	ID_B1	B4	chr9ID_B178575648	ProperStrand	5	5	-inf
chr1	171503046	171503160	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr16	59475964	59479206	protein_coding	Mina	intron	ENSMUSG00000022724	ProperStrand	14	1	-16.0721
chr17	39847558	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	68306461	68306526	protein_coding-noncoding	Pik3r5	utr5	ENSMUSG00000020901	NonProperStrand	3	2	-8.1061
chr11	107551321	107551421	protein_coding	Helz	utr3	ENSMUSG00000020721	NonProperStrand	200	chr11	107549357	107549447	protein_coding	Helz	utr3	ENSMUSG00000020721	ProperStrand	27	1	-11.2219
chr2	177481889	177481977	LINE	L1Md_F3	L1	chr2L1Md_F3177479434	ProperStrand	1	chr2	177490843	177490909	LTR	RLTR25A	ERVK	chr2RLTR25A177490556	ProperStrand	1	1	-inf
chr6	3201496	3201531	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	12638326	12638451	protein_coding-noncoding	Tubgcp3	utr3	ENSMUSG00000000759	ProperStrand	3	1	-9.0398
chr7	65330395	65330440	LINE	L1Md_T	L1	chr7L1Md_T65326087	NonProperStrand	4	chr7	65332197	65332286	LINE	L1Md_T	L1	chr7L1Md_T65331566	NonProperStrand	1	1	-inf
chr8	95864248	95864303	LINE	L1M5	L1	chr8L1M595864158	NonProperStrand	8	chr8	95864986	95865034	LINE	Lx5	L1	chr8Lx595864721	NonProperStrand	11	1	-20.8373
chr11	100705585	100705833	protein_coding	Stat5b	intron	ENSMUSG00000020919	ProperStrand	21	chr2	91670944	91670960	protein_coding	Ambra1	intron	ENSMUSG00000040506	NonProperStrand	61	1	-14.1176
chr12	99260515	99260572	DNA	MER58D	MER1_type	chr12MER58D99260414	ProperStrand	1	chr12	99253704	99253790	LTR	MER57A-int	ERV1	chr12MER57A-int99253255	ProperStrand	1	1	-inf
chr7	128090972	128091062	DNA	MER33	MER1_type	chr7MER33128090904	ProperStrand	1	chr7	128090823	128090923	protein_coding	Polr3e	utr3	ENSMUSG00000030880	NonProperStrand	2	1	-inf
chr16	7099455	7099472	protein_coding	Rbfox1	intron	ENSMUSG00000008658	NonProperStrand	9	chr11	74843702	74843838	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-13.9937
chr17	32535799	32535889	protein_coding-noncoding	Rasal3	utr3	ENSMUSG00000052142	ProperStrand	1	chr17	32535557	32535657	protein_coding	Rasal3	intron	ENSMUSG00000052142	ProperStrand	2	1	-inf
chr15	87732697	87732787	DNA	MER45B	Tip100	chr15MER45B87732681	NonProperStrand	1	chr15	87732204	87732304	SINE	PB1D7	Alu	chr15PB1D787732221	ProperStrand	1	1	-inf
chr9	63985046	63991630	protein_coding	Zwilch	intron	ENSMUSG00000032400	ProperStrand	48	chr9	63980449	63984944	protein_coding	Lctl	intron	ENSMUSG00000032401	NonProperStrand	22	2	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr8	43147630	43147656	LINE	L1Md_F2	L1	chr8L1Md_F243142991	NonProperStrand	9	1	-16.0438
chr3	139696444	139696460	LINE	L1_Mur3	L1	chr3L1_Mur3139695970	NonProperStrand	1	chr4	134819678	134819724	protein_coding	Clic4	intron	ENSMUSG00000037242	ProperStrand	53	1	-inf
chr5	36510349	36510406	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	chr5	22523715	22523818	protein_coding	Lhfpl3	intron	ENSMUSG00000058361	NonProperStrand	52	1	-9.9570
chr1	39571217	39571288	LTR	RMER6D	ERVK	chr1RMER6D39571099	ProperStrand	2	chr12	78350925	78351006	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-13.3256
chr17	56601239	56601260	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	chr1	37420212	37420263	protein_coding	Inpp4a	intron	ENSMUSG00000026113	NonProperStrand	20	1	-12.2328
chr7	16364249	16364311	LINE	L1Md_F2	L1	chr7L1Md_F216363754	NonProperStrand	3	chr6	43336250	43336336	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	1	-19.1271
chr5	88635262	88637268	LINE	L1_Mus2	L1	chr5L1_Mus288633655	NonProperStrand	1	chr5	88637286	88639007	LINE	L1_Mus2	L1	chr5L1_Mus288635590	NonProperStrand	5	1	-inf
chr12	32837201	32837321	LINE	MusHAL1	L1	chr12MusHAL132836686	NonProperStrand	5	chr6	71688651	71688672	protein_coding	Reep1	intron	ENSMUSG00000052852	ProperStrand	7	1	-21.1751
chr5	29435084	29435157	LINE	Lx8	L1	chr5Lx829434701	ProperStrand	1	chr2	44773030	44773074	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	85	1	-inf
chr13	97190547	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr4	9852176	9852195	protein_coding	Gm17492	exon	ENSMUSG00000090384	ProperStrand	1	1	-inf
chr17	39846566	39846666	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	129219884	129219974	protein_coding	Hdac1	utr5	ENSMUSG00000028800	ProperStrand	3	1	-4.3017
chr14	12061311	12061411	LTR	MYSERV16_I-int	ERVK	chr14MYSERV16_I-int12060958	ProperStrand	3	chr14	12068822	12068912	LTR	RMER17C-int	ERVK	chr14RMER17C-int12068825	ProperStrand	3	3	-inf
chr3	104784813	104784893	LTR	MYSERV-int	ERVK	chr3MYSERV-int104784714	ProperStrand	2	chr3	104783750	104784050	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int104782307	ProperStrand	14	1	-19.5799
chr15	77331680	77331754	LINE	L1Md_A	L1	chr15L1Md_A77328917	ProperStrand	1	chr4	118248950	118257493	protein_coding	Wdr65	intron	ENSMUSG00000028730	ProperStrand	288	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	71838609	71838628	Simple_repeat	(TATG)n	Simple_repeat	chr14(TATG)n71838452	ProperStrand	1	1	-inf
chr2	22744867	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	7935220	7935272	protein_coding	Yap1	intron	ENSMUSG00000053110	ProperStrand	74	1	-6.3932
chr1	100180180	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr12	109650627	109650696	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-6.4498
chr18	16485130	16485148	LINE	Lx2	L1	chr18Lx216482397	NonProperStrand	2	chr17	39847011	39847038	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr12	106311120	106311137	LINE	L1_Mur3	L1	chr12L1_Mur3106310407	NonProperStrand	2	chr17	27020733	27020749	antisense	Gm20468	.	ENSMUSG00000092539	ProperStrand	19	1	-20.1864
chr9	22710328	22710429	Other	RMER1B	Other	chr9RMER1B22710184	NonProperStrand	1	chr4	43492783	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-inf
chr9	40803999	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr2	132130780	132130851	protein_coding	Cds2	intron	ENSMUSG00000058793	NonProperStrand	40	1	-8.2512
chr2	80893248	80893348	LINE	L1Md_F2	L1	chr2L1Md_F280887035	ProperStrand	1	chr2	80893575	80893665	LINE	L1Md_F	L1	chr2L1Md_F80893425	ProperStrand	1	1	-inf
chr17	39846752	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	100271757	100271822	SINE	ID_B1	B4	chr6ID_B1100271675	NonProperStrand	1	1	-inf
chr17	39847216	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	12909671	12909779	antisense	Gm15351	.	ENSMUSG00000086770	ProperStrand	6	1	-3.9545
chr11	68094203	68094224	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	chr1	153332431	153332562	protein_coding	Rnf2	intron	ENSMUSG00000026484	ProperStrand	71	1	-8.9151
chr10	40258502	40258587	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr10	110922461	110922536	protein_coding	Nap1l1	intron	ENSMUSG00000058799	ProperStrand	52	1	-5.6365
chr7	46851022	46851951	LINE	L1_Mur3	L1	chr7L1_Mur346851370	ProperStrand	16	chr7	46851949	46854061	LTR	MTC	MaLR	chr7MTC46853906	NonProperStrand	44	13	-inf
chr16	31203674	31203774	LINE	L1M2	L1	chr16L1M231203323	ProperStrand	1	chr16	31203143	31203233	SINE	B3A	B2	chr16B3A31203059	NonProperStrand	1	1	-inf
chr6	48456148	48456238	LTR	ORR1B2	MaLR	chr6ORR1B248456143	NonProperStrand	1	chr6	48456820	48456920	Simple_repeat	(TTTC)n	Simple_repeat	chr6(TTTC)n48456763	ProperStrand	1	1	-inf
chr7	73428534	73428632	protein_coding	Lrrk1	intron	ENSMUSG00000015133	ProperStrand	120	chr2	63852283	63852333	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-10.1290
chr15	85177752	85177786	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr18	60747341	60747427	protein_coding	Myoz3	intron	ENSMUSG00000049173	ProperStrand	22	1	-11.3342
chr2	90395158	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-6.8539
chr12	46522138	46522228	LINE	L1Md_F2	L1	chr12L1Md_F246521543	ProperStrand	1	chr12	46522296	46522396	LTR	LTRIS_Mm	ERV1	chr12LTRIS_Mm46522274	NonProperStrand	1	1	-inf
chr11	109011723	109011751	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-6.1327
chr3	116595166	116605200	protein_coding	Frrs1	intron	ENSMUSG00000033386	ProperStrand	12	chr4	25612488	25612607	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-15.2157
chr2	61816275	61816294	LINE	L1MDa	L1	chr2L1MDa61816254	NonProperStrand	1	chr4	48638981	48650347	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	114	1	-inf
chr18	80128853	80128940	LINE	Lx8	L1	chr18Lx880128441	ProperStrand	10	chr18	80128388	80128456	LTR	ORR1D2	MaLR	chr18ORR1D280128076	ProperStrand	9	1	-20.1232
chr1	100180177	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr3	129995947	129995974	protein_coding	Col25a1	intron	ENSMUSG00000058897	NonProperStrand	112	1	-9.4118
chr10	95374994	95375033	LINE	Lx6	L1	chr10Lx695374933	NonProperStrand	1	chr4	98736870	98736982	protein_coding	Dock7	exon	ENSMUSG00000028556	NonProperStrand	109	1	-inf
chr11	95962616	95962707	protein_coding	Calcoco2	intron	ENSMUSG00000006056	ProperStrand	64	chr2	32280734	32281716	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	4	-inf
chr19	14461694	14461745	LINE	L1MC5	L1	chr19L1MC514461321	NonProperStrand	1	chr19	14461912	14462007	LTR	MLT1F2	MaLR	chr19MLT1F214461747	NonProperStrand	1	1	-inf
chr9	123461905	123461933	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr14	52178056	52178146	pseudogene	Gm16290	.	ENSMUSG00000089836	ProperStrand	1	1	-inf
chrX	77547827	77547893	LINE	Lx3_Mus	L1	chrXLx3_Mus77547782	NonProperStrand	15	chr9	123461801	123461871	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr17	39847331	39848080	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	5379231	5622741	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	259	-21.6447
chr10	30811176	30811215	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr13	54190147	54190176	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-15.5202
chr10	79859437	79859647	protein_coding	Mbd3	intron	ENSMUSG00000035478	NonProperStrand	98	chr13	97190606	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.1821
chr5	43710510	43710610	LINE	L1Md_A	L1	chr5L1Md_A43704847	NonProperStrand	6	chr18	83830876	83830966	LTR	MTEa	MaLR	chr18MTEa83830686	ProperStrand	1	1	-inf
chr17	39844668	39844782	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	mmu-miR-2137	1	21	miRNA	mmu-miR-2137	.	mmu-miR-2137	ProperStrand	2	1	-9.7687
chr9	97080713	97080803	LTR	RMER12	ERVK	chr9RMER1297080705	ProperStrand	4	chr9	97080611	97080711	SINE	B2_Mm1a	B2	chr9B2_Mm1a97080513	NonProperStrand	2	2	-inf
chr9	17987797	17987835	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr2	165808122	165808196	lincRNA	Gm11464	intron	ENSMUSG00000087351	NonProperStrand	32	1	-12.4116
chr17	46790632	46798884	protein_coding-noncoding	Cul7	utr5	ENSMUSG00000038545	NonProperStrand	3	chr17	46790755	46798686	protein_coding	Cul7	exon	ENSMUSG00000038545	NonProperStrand	26	3	-inf
chr7	116018096	116018196	SINE	PB1D10	Alu	chr7PB1D10116018103	ProperStrand	1	chr9	59675641	59675731	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr6	115571703	115571793	protein_coding-noncoding	Raf1	utr3	ENSMUSG00000000441	NonProperStrand	7	chr6	115571812	115571912	protein_coding	Raf1	intron	ENSMUSG00000000441	NonProperStrand	32	1	-17.6818
chr13	23585553	23585668	LTR	MER34	ERV1	chr13MER3423585483	ProperStrand	1	chr17	39847381	39847424	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	45406104	45406120	protein_coding	Dscaml1	intron	ENSMUSG00000032087	NonProperStrand	13	chr17	30463580	30463705	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-10.3423
chr3	145373520	145373547	LINE	Lx9	L1	chr3Lx9145372444	ProperStrand	2	chr14	65549444	65549542	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	1	-19.1037
chr3	19233142	19233709	SINE	B3	B2	chr3B319233156	ProperStrand	1	chr7	141984949	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-inf
chr17	39847223	39847252	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	19257396	19257435	LTR	ORR1A2-int	MaLR	chr7ORR1A2-int19256896	NonProperStrand	19	2	-3.4167
chr1	100184187	100184277	LTR	RLTR6-int	ERV1	chr1RLTR6-int100183963	NonProperStrand	1	chr1	100183733	100183833	LTR	RLTR6_Mm	ERV1	chr1RLTR6_Mm100183423	NonProperStrand	1	1	-inf
chr16	96610408	96610424	protein_coding	Igsf5	intron	ENSMUSG00000000159	NonProperStrand	8	chr5	107907344	107907475	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-14.5964
chrX	150993386	150993491	LINE	L1_Mm	L1	chrXL1_Mm150992634	NonProperStrand	1	chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	24180815	24180915	antisense	Gm10701	.	ENSMUSG00000074465	ProperStrand	2	chr10	119901499	119901589	protein_coding	Hmga2	intron	ENSMUSG00000056758	ProperStrand	5	1	-inf
chr14	28063408	28063510	protein_coding	Arhgef3	intron	ENSMUSG00000021895	ProperStrand	16	chr19	23221281	23221302	protein_coding	Klf9	intron	ENSMUSG00000033863	ProperStrand	3	1	-inf
chr6	3201473	3201507	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	93864192	93864216	protein_coding	Morc3	intron	ENSMUSG00000039456	ProperStrand	53	1	-3.1176
chr2	156161914	156162744	antisense	Gm14252	.	ENSMUSG00000085546	ProperStrand	14	chr9	123462101	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr17	39847552	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	8722668	8722726	protein_coding	Abcb1a	intron	ENSMUSG00000040584	ProperStrand	3	1	-4.3512
chr10	117743823	117743855	LINE	L1M5	L1	chr10L1M5117743748	NonProperStrand	1	chr10	117741815	117741898	LINE	L1MA4	L1	chr10L1MA4117741233	ProperStrand	1	1	-inf
chr10	58601815	58601843	LTR	ORR1C2	MaLR	chr10ORR1C258601768	NonProperStrand	1	chr13	97190569	97190607	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr2	30013505	30013731	LTR	MYSERV-int	ERVK	chr2MYSERV-int30013608	NonProperStrand	6	chr2	30011300	30013503	SINE	B2_Mm1a	B2	chr2B2_Mm1a30011457	ProperStrand	2	2	-inf
chr6	148842740	148842815	protein_coding	Caprin2	intron	ENSMUSG00000030309	ProperStrand	14	chr7	3706759	3706824	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	64	1	-14.8557
chr6	3201465	3201502	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	84670351	84670531	SINE	PB1D7	Alu	chr2PB1D784670434	ProperStrand	9	1	-6.5801
chr14	21537946	21538046	protein_coding	2310021P13Rik	intron	ENSMUSG00000021819	ProperStrand	60	chr14	21556624	21556714	protein_coding	Camk2g	exon	ENSMUSG00000021820	NonProperStrand	161	1	-10.0419
chr1	167264383	167264402	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	chr1	176835188	176835217	protein_coding	Grem2	intron	ENSMUSG00000050069	ProperStrand	22	1	-10.6019
chr19	53143297	53143397	LINE	HAL1-3A_ME	L1	chr19HAL1-3A_ME53143284	ProperStrand	5	chr19	53143077	53143167	SINE	RSINE1	B4	chr19RSINE153143092	ProperStrand	2	2	-inf
chr2	181515416	181515521	protein_coding	Myt1	intron	ENSMUSG00000010505	ProperStrand	44	chr9	65201725	65201772	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-11.6824
chr7	125684945	125685012	protein_coding	Tmc7	intron	ENSMUSG00000042246	ProperStrand	40	chr8	124000082	124000159	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	2	-11.3078
chr2	132056280	132056343	SINE	PB1D7	Alu	chr2PB1D7132056289	NonProperStrand	1	chr2	132091257	132094165	protein_coding	Cds2	intron	ENSMUSG00000058793	NonProperStrand	40	1	-inf
chr12	20645461	20645551	LINE	L1_Mur2	L1	chr12L1_Mur220644894	NonProperStrand	2	chr12	20645607	20645707	LINE	L1_Mur2	L1	chr12L1_Mur220645510	NonProperStrand	2	2	-inf
chr8	11988775	11988793	LINE	L1MB3	L1	chr8L1MB311988541	ProperStrand	1	chr15	81914987	81915004	protein_coding	Mei1	intron	ENSMUSG00000068117	ProperStrand	63	1	-inf
chr6	44518664	44518754	LINE	Lx	L1	chr6Lx44518615	ProperStrand	1	chr6	44518522	44518622	LTR	RMER6C	ERVK	chr6RMER6C44518228	ProperStrand	1	1	-inf
chr9	46094673	46094751	protein_coding	Bud13	intron	ENSMUSG00000032077	ProperStrand	11	chr9	46084123	46084187	protein_coding	Zfp259	intron	ENSMUSG00000032078	ProperStrand	9	1	-19.6928
chr4	116743446	116743508	protein_coding	Eif2b3	exon	ENSMUSG00000028683	ProperStrand	53	chr6	71831749	71831842	protein_coding	Ptcd3	intron	ENSMUSG00000063884	NonProperStrand	31	1	-13.6084
chr2	85044263	85044322	Simple_repeat	(TATAA)n	Simple_repeat	chr2(TATAA)n85044276	ProperStrand	1	chr8	105178669	105194517	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	1	-inf
chr15	100528525	100528542	antisense	1810009N23Rik	.	ENSMUSG00000090062	ProperStrand	8	chr13	97190554	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.2032
chr13	12440839	12440909	SINE	B1_Mur3	Alu	chr13B1_Mur312440845	ProperStrand	1	chr9	123461957	123462000	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	25359457	25359547	LINE	Lx7	L1	chr15Lx725358757	ProperStrand	1	chr15	36795992	36796092	LTR	ORR1B1	MaLR	chr15ORR1B136795777	NonProperStrand	1	1	-inf
chr5	146261152	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr12	24898201	24898285	Unknown	MurSatRep1	Unknown	chr12MurSatRep124898071	NonProperStrand	1	1	-inf
chr10	24176572	24176653	LINE	L1VL4	L1	chr10L1VL424175218	ProperStrand	2	chr14	33968858	33968885	protein_coding	Wdfy4	exon	ENSMUSG00000051506	NonProperStrand	110	1	-18.1493
chr16	5847037	5847137	LTR	MT2A	ERVL	chr16MT2A5847007	NonProperStrand	1	chr16	5847451	5847541	LTR	MT2A	ERVL	chr16MT2A5847414	NonProperStrand	1	1	-inf
chr18	77157410	77157465	LINE	Lx6	L1	chr18Lx677157294	ProperStrand	4	chr4	151449559	151449613	protein_coding	Plekhg5	intron	ENSMUSG00000039713	NonProperStrand	15	1	-inf
chr11	107417472	107417557	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	chr12	118306567	118306594	protein_coding	Ptprn2	intron	ENSMUSG00000056553	ProperStrand	87	2	-14.0668
chr15	55066196	55066220	protein_coding	Deptor	intron	ENSMUSG00000022419	NonProperStrand	21	chr7	123284131	123284187	protein_coding	Plekha7	exon	ENSMUSG00000045659	ProperStrand	186	1	-11.8803
chr9	102718229	102718319	LINE	Lx7	L1	chr9Lx7102717224	ProperStrand	9	chr9	102718556	102718656	Low_complexity	CT-rich	Low_complexity	chr9CT-rich102718487	ProperStrand	2	1	-20.8824
chr2	91542486	91542529	protein_coding	Atg13	intron	ENSMUSG00000027244	NonProperStrand	12	chr8	80821124	80821166	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	1	-10.5550
chr1	165174451	165174475	Low_complexity	CT-rich	Low_complexity	chr1CT-rich165174401	NonProperStrand	1	chr1	165178438	165178474	protein_coding	Prrx1	exon	ENSMUSG00000026586	ProperStrand	33	1	-inf
chr10	128084457	128085156	lincRNA	Gm17336	exon	ENSMUSG00000091431	ProperStrand	114	chr7	34159297	34159353	protein_coding	Gm5895	intron	ENSMUSG00000090937	NonProperStrand	6	1	-15.5055
chr2	31477919	31478009	LTR	ORR1C2	MaLR	chr2ORR1C231477741	NonProperStrand	1	chr2	31478057	31478157	SINE	B1_Mus1	Alu	chr2B1_Mus131478057	NonProperStrand	1	1	-inf
chr15	95807587	95807681	LTR	RMER17C	ERVK	chr15RMER17C95807600	NonProperStrand	1	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-inf
chr8	70896258	70896300	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr13	97190546	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.7417
chr4	42982496	42982560	SINE	B1_Mus1	Alu	chr4B1_Mus142982471	NonProperStrand	1	chr8	123806071	123806125	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-inf
chr17	39846941	39846989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	192059760	192059812	Simple_repeat	(TCTA)n	Simple_repeat	chr1(TCTA)n192059660	NonProperStrand	1	1	-inf
chr17	86395234	86395314	protein_coding	Srbd1	intron	ENSMUSG00000024135	NonProperStrand	31	chr9	80172003	80172057	protein_coding	Impg1	intron	ENSMUSG00000032343	NonProperStrand	24	2	-inf
chr17	39847188	39847247	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	42845451	42845472	protein_coding	Hps1	intron	ENSMUSG00000025188	NonProperStrand	1	1	-inf
chr11	45655850	45655940	SINE	PB1D10	Alu	chr11PB1D1045655847	NonProperStrand	1	chr19	24931535	24931635	protein_coding	Pgm5	intron	ENSMUSG00000041731	NonProperStrand	9	1	-inf
chr6	3201470	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	69350451	69350517	protein_coding	Dnahc2	intron	ENSMUSG00000005237	ProperStrand	29	1	-4.2407
chr4	146904947	146905037	LINE	L1_Mur2	L1	chr4L1_Mur2146904776	ProperStrand	5	chr11	19936697	19936797	SINE	B1_Mus2	Alu	chr11B1_Mus219936621	NonProperStrand	9	1	-inf
chr1	24261301	24261401	LINE	L1MA4	L1	chr1L1MA424260664	NonProperStrand	1	chr1	31264576	31264666	protein_coding	4931428L18Rik	intron	ENSMUSG00000086727	ProperStrand	3	1	-inf
chr10	60278956	60279047	protein_coding	Unc5b	intron	ENSMUSG00000020099	NonProperStrand	10	chr13	49449377	49449986	protein_coding	Bicd2	intron	ENSMUSG00000037933	ProperStrand	34	1	-16.8504
chr13	55299686	55299766	LTR	MTB_Mm	MaLR	chr13MTB_Mm55299414	NonProperStrand	1	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr2	150242421	150242511	protein_coding	Zfp442	intron	ENSMUSG00000068130	ProperStrand	9	chr7	73229117	73229217	protein_coding	H47	intron	ENSMUSG00000075701	ProperStrand	1	1	-inf
chr9	123461924	123461944	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	57765665	57765787	protein_coding	Ubl7	intron	ENSMUSG00000055720	ProperStrand	2	1	-8.0983
chr14	79769859	79769928	protein_coding	Naa16	intron	ENSMUSG00000022020	ProperStrand	11	chr10	80249185	80249237	protein_coding	Dot1l	exon	ENSMUSG00000061589	ProperStrand	91	1	-14.6583
chr17	39847245	39847343	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	19628834	19628886	SINE	B3A	B2	chr3B3A19628825	NonProperStrand	1	1	-inf
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	120793807	120793888	protein_coding	Ccdc57	intron	ENSMUSG00000048445	ProperStrand	62	3	-15.3274
chr5	150799580	150799652	SINE	B1_Mus2	Alu	chr5B1_Mus2150799533	ProperStrand	1	chr5	24908334	24908396	protein_coding	Mll3	intron	ENSMUSG00000038056	ProperStrand	134	1	-inf
chr2	4585354	4585454	LTR	MT2C_Mm	ERVL	chr2MT2C_Mm4585096	ProperStrand	1	chr2	4585723	4585813	SINE	PB1	Alu	chr2PB14585710	NonProperStrand	1	1	-inf
chr16	22247224	22258240	protein_coding-noncoding	Tra2b	utr3	ENSMUSG00000022858	ProperStrand	2	chr16	22248478	22258127	protein_coding	Tra2b	intron	ENSMUSG00000022858	ProperStrand	57	2	-inf
chr3	8936837	8936864	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-3.6209
chr6	43406633	43406687	protein_coding	Tpk1	intron	ENSMUSG00000029735	ProperStrand	82	chr9	121312165	121312209	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	242	1	-8.6020
chr17	39847080	39847125	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	134541929	134541984	SINE	B3A	B2	chr6B3A134541922	NonProperStrand	3	1	-5.4882
chr1	150913816	150913906	DNA	MER20	MER1_type	chr1MER20150913714	ProperStrand	1	chr1	150913976	150914076	LINE	Lx4A	L1	chr1Lx4A150913969	NonProperStrand	1	1	-inf
chr3	123692345	123692435	LTR	MTB	MaLR	chr3MTB123692340	NonProperStrand	1	chr3	123692243	123692343	Simple_repeat	(TCTCCC)n	Simple_repeat	chr3(TCTCCC)n123692220	NonProperStrand	1	1	-inf
chr9	44335349	44335392	SINE	MIR3	MIR	chr9MIR344335277	NonProperStrand	16	chr9	123461931	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr10	55989447	55989466	LINE	L1_Mm	L1	chr10L1_Mm55987659	NonProperStrand	1	chr9	123462033	123462138	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847174	39847292	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	130704911	130704944	SINE	ID_B1	B4	chr4ID_B1130704853	ProperStrand	4	1	-4.8204
chr3	146770256	146770342	LINE	L1Md_A	L1	chr3L1Md_A146770128	ProperStrand	3	chr8	27129527	27129592	SINE	B3A	B2	chr8B3A27129407	ProperStrand	1	1	-inf
chr10	4132635	4134048	LINE	L1Md_T	L1	chr10L1Md_T4132275	ProperStrand	4	chr17	39846432	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr15	42032476	42032576	LTR	IAPLTR3-int	ERVK	chr15IAPLTR3-int42032470	ProperStrand	1	chr4	116574460	116574550	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-inf
chr11	48806006	48806067	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr11	88425232	88425284	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-3.6261
chr17	25439803	25439893	SINE	B4	B4	chr17B425439822	ProperStrand	1	chr17	25439600	25439700	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n25439468	NonProperStrand	1	1	-inf
chr3	71523750	71523850	LINE	L1M2	L1	chr3L1M271523725	NonProperStrand	1	chr3	71523528	71523618	LINE	Lx7	L1	chr3Lx771522612	NonProperStrand	1	1	-inf
chr3	96064993	96065093	LINE	L1MD1	L1	chr3L1MD196064955	ProperStrand	1	chr3	96064730	96064820	LINE	L1MD3	L1	chr3L1MD396064712	NonProperStrand	1	1	-inf
chr17	39846570	39846599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	114774442	114774481	LTR	ORR1A2	MaLR	chr9ORR1A2114774439	ProperStrand	4	1	-3.6552
chr17	46704852	46704959	protein_coding	Ptk7	intron	ENSMUSG00000023972	ProperStrand	15	chr5	131701196	131701231	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	1	-11.5956
chr6	129886102	129886192	LTR	IAPEz-int	ERVK	chr6IAPEz-int129886018	ProperStrand	1	chr6	129885915	129886014	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm129885681	ProperStrand	1	1	-inf
chr6	104177036	104177126	LINE	L1Md_F2	L1	chr6L1Md_F2104176984	ProperStrand	1	chr6	104176742	104176842	LTR	RLTR6_Mm	ERV1	chr6RLTR6_Mm104176393	ProperStrand	1	1	-inf
chr19	36366142	36366238	DNA	Arthur1C	Tip100	chr19Arthur1C36366026	NonProperStrand	1	chr19	36365185	36365205	Simple_repeat	(TC)n	Simple_repeat	chr19(TC)n36365179	ProperStrand	1	1	-inf
chr9	123461905	123461975	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	114670281	114687164	protein_coding	Acacb	intron	ENSMUSG00000042010	NonProperStrand	38	2	-3.5608
chr7	125403820	125403909	DNA	MER45A	Tip100	chr7MER45A125403757	NonProperStrand	1	chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	1	-inf
chr2	157229930	157229947	SINE	B3A	B2	chr2B3A157229766	ProperStrand	1	chr19	3768438	3768551	protein_coding	Suv420h1	intron	ENSMUSG00000045098	ProperStrand	19	1	-inf
chr1	156064707	156064757	LINE	L1MA4	L1	chr1L1MA4156064390	NonProperStrand	3	chr17	39847636	39847679	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr14	70312492	70312562	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	65	chr2	73366349	73366374	protein_coding	Wipf1	intron	ENSMUSG00000075284	ProperStrand	9	2	-inf
chr9	20937359	20937459	SINE	B2_Mm1t	B2	chr9B2_Mm1t20937333	ProperStrand	10	chr9	20937513	20937603	SINE	PB1D9	Alu	chr9PB1D920937500	ProperStrand	5	5	-inf
chr12	81148809	81148909	Low_complexity	GA-rich	Low_complexity	chr12GA-rich81148826	ProperStrand	1	chr12	81148724	81148814	SINE	B4A	B4	chr12B4A81148515	ProperStrand	2	1	-inf
chr4	129233277	129233367	protein_coding-noncoding	Lck	utr3	ENSMUSG00000000409	ProperStrand	3	chr4	129233150	129233250	protein_coding	Lck	exon	ENSMUSG00000000409	ProperStrand	39	3	-inf
chr11	68998592	68998618	protein_coding	Alox8	exon	ENSMUSG00000020891	ProperStrand	38	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.4812
chr11	62713243	62713261	protein_coding	Fam18b	intron	ENSMUSG00000014177	NonProperStrand	2	chr11	87125467	87125548	protein_coding	Ppm1e	intron	ENSMUSG00000046442	ProperStrand	15	1	-22.6177
chr17	39846954	39846993	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	103751474	103751503	LTR	RLTR11B	ERVK	chr5RLTR11B103751388	ProperStrand	4	1	-3.6552
chr6	82730052	82730129	SINE	B1_Mur2	Alu	chr6B1_Mur282730048	NonProperStrand	1	chr6	82729939	82729989	Simple_repeat	(GA)n	Simple_repeat	chr6(GA)n82729896	NonProperStrand	1	1	-inf
chr2	59764406	59764483	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	chr14	27417087	27417154	protein_coding	Fam116a	intron	ENSMUSG00000040818	ProperStrand	34	1	-11.2515
chr19	5364728	5364754	protein_coding	Banf1	utr3	ENSMUSG00000024844	ProperStrand	37	chr9	62811283	62811356	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-11.7625
chr14	73925216	73925316	protein_coding	Sucla2	utr5	ENSMUSG00000022110	ProperStrand	2	chr14	73924901	73924991	protein_coding	Nudt15	exon	ENSMUSG00000033405	NonProperStrand	1	1	-inf
chr1	89499019	89499058	Simple_repeat	(CATA)n	Simple_repeat	chr1(CATA)n89498796	ProperStrand	2	chr1	55077979	55078028	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	1	-19.6352
chr7	30022719	30022762	SINE	B1F	Alu	chr7B1F30022705	NonProperStrand	2	chr7	30022761	30022869	SINE	B1_Mur4	Alu	chr7B1_Mur430022789	ProperStrand	2	2	-inf
chr17	64451869	64451969	protein_coding	Fer	intron	ENSMUSG00000000127	NonProperStrand	23	chr17	64309767	64309857	protein_coding	Fer	intron	ENSMUSG00000000127	ProperStrand	20	1	-16.2021
chrX	36707879	36707969	LINE	L1_Mur2	L1	chrXL1_Mur236707811	ProperStrand	1	chrX	36707630	36707730	SINE	B1F	Alu	chrXB1F36707656	ProperStrand	1	1	-inf
chr13	23764083	23764178	LINE	Lx2B	L1	chr13Lx2B23764080	NonProperStrand	27	chr19	5796164	5796215	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-5.9978
chr11	109011643	109011987	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	39847341	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	134	-inf
chr6	117924650	117924670	SINE	B3	B2	chr6B3117924621	NonProperStrand	10	chr7	137452844	137452961	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-11.8026
chr5	27125245	27125316	LINE	Lx8	L1	chr5Lx827125259	ProperStrand	2	chr17	39847552	39847581	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	117966569	117966641	protein_coding	Dnahc17	intron	ENSMUSG00000033987	ProperStrand	36	chr3	144500657	144500706	protein_coding	Clca4	exon	ENSMUSG00000037033	ProperStrand	58	1	-13.1241
chr17	34952012	34952075	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	2	-8.5574
chr17	39847440	39847723	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	116309529	116309548	protein_coding-noncoding	Akr1a1	utr3	ENSMUSG00000028692	NonProperStrand	5	2	-5.9065
chr4	43492944	43493060	SINE	B3	B2	chr4B343492960	NonProperStrand	660	chr4	43492898	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	8	-inf
chr17	39847681	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	28970322	28970420	protein_coding	Dyrk1b	exon	ENSMUSG00000002409	ProperStrand	2	1	-5.4040
chr17	39847990	39848079	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	81104467	81104492	pseudogene	Gm11765	.	ENSMUSG00000081391	NonProperStrand	1	1	-inf
chr2	90395138	90395167	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr6	38194688	38194743	protein_coding	D630045J12Rik	intron	ENSMUSG00000063455	ProperStrand	34	1	-10.8672
chr12	33161812	33161914	LINE	L1_Mus1	L1	chr12L1_Mus133157854	ProperStrand	17	chr9	48243198	48243223	LINE	L1_Mur3	L1	chr9L1_Mur348241782	NonProperStrand	2	1	-21.3416
chr13	8767063	8767152	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	chr18	53730751	53730772	protein_coding	Prdm6	intron	ENSMUSG00000069378	NonProperStrand	20	1	-14.9764
chr14	27397628	27397698	SINE	B3	B2	chr14B327397589	ProperStrand	2	chr14	27400591	27400666	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-19.5353
chr17	37006145	37009459	Simple_repeat	(TAAA)n	Simple_repeat	chr17(TAAA)n37006154	ProperStrand	1	chr17	37009497	37009597	protein_coding	Trim10	intron	ENSMUSG00000073400	ProperStrand	39	1	-inf
chr9	37508727	37508796	LINE	Lx4B	L1	chr9Lx4B37507683	NonProperStrand	6	chr9	37510453	37510532	LINE	Lx4B	L1	chr9Lx4B37510109	NonProperStrand	5	1	-inf
chr10	117142069	117142200	protein_coding	Mdm2	intron	ENSMUSG00000020184	ProperStrand	19	chr1	58016674	58016691	protein_coding	Kctd18	intron	ENSMUSG00000054770	NonProperStrand	14	1	-17.2367
chr2	170513978	170514011	SINE	B1_Mm	Alu	chr2B1_Mm170513905	NonProperStrand	2	chr8	11509736	11509782	protein_coding	Carkd	intron	ENSMUSG00000031505	ProperStrand	13	1	-inf
chr15	46256020	46256120	LINE	L1Md_F2	L1	chr15L1Md_F246255210	NonProperStrand	1	chr3	40702776	40702866	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	1	-inf
chr2	138698472	138698562	LINE	Lx3C	L1	chr2Lx3C138698421	NonProperStrand	1	chr2	138698052	138698152	pseudogene	Gm14065	.	ENSMUSG00000081009	NonProperStrand	1	1	-inf
chr6	67299706	67299792	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr11	72217248	72217267	protein_coding	Smtnl2	intron	ENSMUSG00000045667	ProperStrand	26	1	-11.2496
chr3	133316261	133316318	LTR	MTB	MaLR	chr3MTB133316117	NonProperStrand	1	chr13	112578200	112578267	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chrX	132169704	132169721	LINE	L1Md_A	L1	chrXL1Md_A132166166	ProperStrand	1	chr17	33883296	33883377	protein_coding	Rab11b	utr3	ENSMUSG00000077450	ProperStrand	25	1	-inf
chr11	98087280	98087357	protein_coding	Cdk12	intron	ENSMUSG00000003119	ProperStrand	24	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.4786
chr17	53680882	53680993	SINE	B3A	B2	chr17B3A53680830	NonProperStrand	1	chr9	123462079	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	7868735	7868825	protein_coding-noncoding	Birc3	utr3	ENSMUSG00000032000	ProperStrand	2	chr9	7868552	7868652	protein_coding	Birc3	intron	ENSMUSG00000032000	ProperStrand	9	2	-inf
chr10	19894044	19894113	protein_coding	Mtap7	intron	ENSMUSG00000019996	NonProperStrand	44	chr4	150381985	150382029	protein_coding	Per3	intron	ENSMUSG00000028957	NonProperStrand	46	1	-13.1852
chr6	6212298	6212347	lincRNA	RP23-360N5.1	exon	ENSMUSG00000093482	NonProperStrand	44	chr7	24197818	24197857	protein_coding	Nlrp5	intron	ENSMUSG00000015721	NonProperStrand	13	1	-15.7779
chr3	96002608	96002698	LTR	RLTRETN_Mm	ERVK	chr3RLTRETN_Mm96002404	NonProperStrand	1	chr3	96002332	96002432	protein_coding	Bola1	utr5	ENSMUSG00000015943	ProperStrand	2	1	-inf
chr14	34330481	34330578	LINE	L1Md_F2	L1	chr14L1Md_F234330027	ProperStrand	2	chr2	34772333	34772390	LTR	ORR1A4-int	MaLR	chr2ORR1A4-int34772235	NonProperStrand	34	1	-19.8869
chr2	166856556	166859267	protein_coding	Ddx27	intron	ENSMUSG00000017999	ProperStrand	17	chr13	44869578	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.9833
chr13	67310411	67310501	LTR	RLTR9D	ERVK	chr13RLTR9D67310429	ProperStrand	1	chr13	67310125	67310225	protein_coding	Zfp455	utr3	ENSMUSG00000051037	NonProperStrand	1	1	-inf
chr16	27703412	27703502	LINE	Lx5	L1	chr16Lx527702679	ProperStrand	1	chr16	27703877	27703977	Other	RMER1C	Other	chr16RMER1C27703706	NonProperStrand	1	1	-inf
chr13	114127027	114127081	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	chr7	15972741	15972789	protein_coding	Obox2	intron	ENSMUSG00000074369	NonProperStrand	66	1	-10.9713
chr5	88570242	88570342	LINE	L1_Mur1	L1	chr5L1_Mur188570212	ProperStrand	4	chr5	88570075	88570165	LINE	Lx3_Mus	L1	chr5Lx3_Mus88569358	NonProperStrand	9	4	-inf
chr1	100180180	100180217	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr7	25752206	25752289	SINE	B1_Mur3	Alu	chr7B1_Mur325752194	NonProperStrand	1	1	-inf
chr8	95801156	95801256	protein_coding	Ces1f	intron	ENSMUSG00000031725	ProperStrand	45	chr18	24818511	24818601	protein_coding	Mocos	intron	ENSMUSG00000039616	ProperStrand	48	1	-13.0530
chr14	27334366	27334467	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr14	27334285	27334375	protein_coding	Gm2178	exon	ENSMUSG00000078128	ProperStrand	2	2	-inf
chr1	4962660	4962731	protein_coding	Rgs20	intron	ENSMUSG00000002459	ProperStrand	8	chr7	133092316	133092341	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-9.2646
chr2	74313557	74313576	LINE	L1Md_A	L1	chr2L1Md_A74312665	NonProperStrand	1	chrX	23347192	23347253	protein_coding	Wdr44	intron	ENSMUSG00000036769	ProperStrand	1	1	-inf
chr14	27195823	27195913	antisense	4933413J09Rik	.	ENSMUSG00000021874	ProperStrand	66	chr6	28804958	28805058	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-6.3446
chr10	39415783	39415884	lincRNA	E130307A14Rik	intron	ENSMUSG00000087177	NonProperStrand	100	chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	1	-11.6215
chr13	99394661	99394725	LTR	RMER13A	ERVK	chr13RMER13A99394445	ProperStrand	1	chr13	99380725	99380811	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n99380719	ProperStrand	1	1	-inf
chr3	73826942	73827032	LINE	L1Md_F3	L1	chr3L1Md_F373826762	NonProperStrand	1	chr3	73827124	73827224	LINE	L1Md_F3	L1	chr3L1Md_F373827092	NonProperStrand	1	1	-inf
chr11	114675769	114675869	LTR	MTD	MaLR	chr11MTD114675725	ProperStrand	4	chr11	114675643	114675733	Unknown	YREP_Mm	Unknown	chr11YREP_Mm114675537	NonProperStrand	3	3	-inf
chr2	165317359	165317382	protein_coding-noncoding	2810408M09Rik	utr3	ENSMUSG00000039725	ProperStrand	1	chr2	165318318	165318414	protein_coding	2810408M09Rik	intron	ENSMUSG00000039725	ProperStrand	10	1	-inf
chr8	3454900	3454917	protein_coding	Arhgef18	utr3	ENSMUSG00000004568	NonProperStrand	4	chr8	87888722	87888845	protein_coding	Mylk3	exon	ENSMUSG00000031698	ProperStrand	57	1	-18.0173
chr7	107513368	107513391	protein_coding	Ppme1	intron	ENSMUSG00000030718	NonProperStrand	28	chr13	74324582	74324698	protein_coding	Exoc3	intron	ENSMUSG00000034152	ProperStrand	24	1	-15.4344
chr6	39410958	39411048	SINE	B1_Mur3	Alu	chr6B1_Mur339410971	ProperStrand	2	chr6	39410825	39410925	SINE	ID_B1	B4	chr6ID_B139410829	ProperStrand	1	1	-inf
chr6	30344893	30344993	LTR	RMER4A	ERVK	chr6RMER4A30344782	ProperStrand	1	chr6	30344532	30344622	SINE	B1_Mus1	Alu	chr6B1_Mus130344540	NonProperStrand	1	1	-inf
chr4	116685608	116687440	DNA	Charlie1a	MER1_type	chr4Charlie1a116685426	ProperStrand	1	chr17	39847174	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr16	57138096	57138163	protein_coding	Tomm70a	intron	ENSMUSG00000022752	ProperStrand	50	chr10	21321635	21321693	protein_coding	1700020N01Rik	intron	ENSMUSG00000050844	ProperStrand	28	1	-13.9350
chr4	155535369	155535392	LTR	IAP-d-int	ERVK	chr4IAP-d-int155535257	NonProperStrand	1	chr4	155557185	155557270	protein_coding	Agrn	intron	ENSMUSG00000041936	NonProperStrand	37	1	-inf
chr5	112280705	112280741	LTR	MTB_Mm	MaLR	chr5MTB_Mm112280465	ProperStrand	1	chr5	112279408	112279457	LTR	RMER19B	ERVK	chr5RMER19B112279081	NonProperStrand	9	1	-inf
chr2	127821432	127821499	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	chr19	46867933	46868008	protein_coding	Cnnm2	intron	ENSMUSG00000064105	ProperStrand	55	1	-12.8239
chr4	91240030	91240063	LINE	L1Md_T	L1	chr4L1Md_T91237207	ProperStrand	36	chr4	91234946	91235029	LINE	Lx8	L1	chr4Lx891234586	NonProperStrand	1	1	-inf
chr12	33153690	33153780	LINE	L1MA4	L1	chr12L1MA433153622	ProperStrand	1	chr12	33153777	33153877	LTR	MTC	MaLR	chr12MTC33153794	ProperStrand	2	1	-inf
chr19	59846256	59846276	LTR	MTEa	MaLR	chr19MTEa59846190	ProperStrand	1	chr6	144999842	144999913	protein_coding	Bcat1	intron	ENSMUSG00000030268	ProperStrand	35	1	-inf
chr2	60881616	60881716	LINE	L1MD1	L1	chr2L1MD160881433	NonProperStrand	2	chr2	60881723	60881813	LTR	RLTR9E	ERVK	chr2RLTR9E60881745	NonProperStrand	2	2	-inf
chr3	62669468	62669568	LINE	L1_Mus4	L1	chr3L1_Mus462669478	NonProperStrand	1	chr3	62669347	62669437	LINE	L1_Rod	L1	chr3L1_Rod62669279	NonProperStrand	1	1	-inf
chr17	39843709	39843770	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr14	21621210	21621251	SINE	B3	B2	chr14B321621013	ProperStrand	1	1	-inf
chr17	39847937	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	80881525	80881598	SINE	B4A	B4	chr13B4A80881510	NonProperStrand	1	1	-inf
chr16	36679449	36679539	LINE	L1VL2	L1	chr16L1VL236678429	NonProperStrand	2	chr16	36662846	36662946	protein_coding	Cd86	intron	ENSMUSG00000022901	NonProperStrand	4	2	-inf
chr3	95118299	95118660	antisense	RP24-372P19.1	.	ENSMUSG00000093424	NonProperStrand	11	chr3	95118686	95119153	protein_coding	Gm10691	utr5	ENSMUSG00000074414	NonProperStrand	8	8	-inf
chr1	165608473	165608540	LTR	RLTR10	ERVK	chr1RLTR10165608138	ProperStrand	1	chr17	5287555	5287632	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-inf
chr17	35578066	35578151	protein_coding-noncoding	H2-Q7	utr5	ENSMUSG00000060550	ProperStrand	1	chr17	35576780	35576828	protein_coding	H2-Q7	intron	ENSMUSG00000060550	ProperStrand	1	1	-inf
chr18	24474709	24474799	LTR	ORR1B1	MaLR	chr18ORR1B124474417	NonProperStrand	2	chr18	24474830	24474930	LTR	ORR1D1-int	MaLR	chr18ORR1D1-int24474795	NonProperStrand	2	2	-inf
chr11	69640297	69641450	protein_coding	Nlgn2	exon	ENSMUSG00000051790	NonProperStrand	22	chr8	61092299	61092318	protein_coding	Galntl6	intron	ENSMUSG00000061864	ProperStrand	140	1	-12.3544
chr1	179668416	179668450	protein_coding	1700016C15Rik	intron	ENSMUSG00000015962	ProperStrand	6	chr9	123461989	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr17	45569803	45570301	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr8	107057790	107057864	protein_coding	Nae1	intron	ENSMUSG00000031878	NonProperStrand	10	1	-12.4618
chr16	17087132	17087189	protein_coding	Ppil2	utr3	ENSMUSG00000022771	ProperStrand	23	chr13	97190541	97190612	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr13	73627711	73627728	protein_coding	Lpcat1	intron	ENSMUSG00000021608	ProperStrand	27	chr1	82359350	82359474	protein_coding	Rhbdd1	intron	ENSMUSG00000026142	ProperStrand	165	1	-11.6071
chr1	166160299	166160402	LINE	L1Md_F2	L1	chr1L1Md_F2166159749	ProperStrand	3	chr1	166159515	166159570	LTR	RLTR4_Mm	ERV1	chr1RLTR4_Mm166158985	ProperStrand	1	1	-inf
chr1	170870229	170870272	LINE	L1M4c	L1	chr1L1M4c170870239	ProperStrand	1	chr4	43492953	43493060	SINE	B3	B2	chr4B343492960	NonProperStrand	660	1	-inf
chr17	39846721	39846758	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	86121345	86121423	LTR	MT2C_Mm	ERVL	chr17MT2C_Mm86121269	ProperStrand	1	1	-inf
chr17	39847312	39847380	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	29111236	29111254	protein_coding	Rbm28	intron	ENSMUSG00000029701	NonProperStrand	1	1	-inf
chr4	119282794	119282862	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	chr17	74623008	74623057	protein_coding	Memo1	intron	ENSMUSG00000058704	NonProperStrand	64	1	-10.4839
chr1	37335327	37335417	LTR	MTEa	MaLR	chr1MTEa37335316	NonProperStrand	3	chr1	37335512	37335612	LTR	RLTR25B	ERVK	chr1RLTR25B37335479	NonProperStrand	3	3	-inf
chr3	83766574	83766590	protein_coding	D930015E06Rik	intron	ENSMUSG00000033767	ProperStrand	10	chr18	50195859	50195965	protein_coding	Tnfaip8	intron	ENSMUSG00000062210	ProperStrand	33	1	-16.9089
chr16	17600046	17600107	LTR	ORR1C2	MaLR	chr16ORR1C217599896	NonProperStrand	1	chr10	90038676	90038706	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-inf
chr17	39843589	39843634	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	146261238	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	3	-5.5637
chr4	133372790	133372840	lincRNA	Gm12974	intron	ENSMUSG00000084789	ProperStrand	1	chrX	52488756	52488809	protein_coding	Slxl1	intron	ENSMUSG00000067909	NonProperStrand	19	1	-inf
chr1	74281120	74281330	LTR	LTR31	ERV1	chr1LTR3174281095	ProperStrand	3	chr2	131146656	131146713	protein_coding	Rnf24	intron	ENSMUSG00000048911	ProperStrand	37	1	-19.4598
chr17	39842998	39843070	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr13	57649833	57649905	protein_coding	Spock1	intron	ENSMUSG00000056222	ProperStrand	34	2	-10.5440
chr6	140645445	140645542	SINE	B3A	B2	chr6B3A140645402	NonProperStrand	1	chr19	53221902	53221943	protein_coding	Add3	intron	ENSMUSG00000025026	ProperStrand	33	1	-inf
chr17	86120779	86120815	LTR	MTC	MaLR	chr17MTC86120611	NonProperStrand	1	chr11	85621542	85621602	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-inf
chrX	101654895	101654975	LINE	Lx8	L1	chrXLx8101654814	NonProperStrand	2	chrX	101655025	101655057	Simple_repeat	(TTCC)n	Simple_repeat	chrX(TTCC)n101655005	ProperStrand	2	1	-19.8939
chr14	78593840	78593925	LTR	BGLII_Mus	ERVK	chr14BGLII_Mus78593606	NonProperStrand	1	chr9	59662050	59662117	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr10	58333111	58333174	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	chr1	79707395	79707485	protein_coding	Wdfy1	intron	ENSMUSG00000073643	ProperStrand	46	1	-10.6531
chr19	47734852	47734897	protein_coding	Col17a1	intron	ENSMUSG00000025064	NonProperStrand	7	chr10	119471130	119471231	protein_coding	Grip1	intron	ENSMUSG00000034813	ProperStrand	62	1	-16.4140
chr1	122357170	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr1	10037825	10037919	protein_coding	Cspp1	intron	ENSMUSG00000056763	NonProperStrand	8	1	-13.0457
chr17	39847480	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	94571351	94571418	SINE	B1_Mur3	Alu	chr11B1_Mur394571333	NonProperStrand	1	1	-inf
chr17	39847674	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	80095103	80095152	SINE	ID_B1	B4	chr15ID_B180095043	NonProperStrand	1	1	-inf
chr17	39847831	39847908	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	33520733	33520814	Simple_repeat	(CATATA)n	Simple_repeat	chr5(CATATA)n33520740	NonProperStrand	2	1	-5.4040
chr18	44443194	44443230	LTR	MTEb	MaLR	chr18MTEb44443175	NonProperStrand	2	chr9	123462127	123462173	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr11	116541596	116541723	protein_coding-noncoding	St6galnac2	utr3	ENSMUSG00000057286	ProperStrand	22	chr19	9006005	9006021	protein_coding	Eml3	intron	ENSMUSG00000071647	ProperStrand	68	1	-13.8064
chr2	22744852	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	22556376	22556392	protein_coding	Dgkg	intron	ENSMUSG00000022861	ProperStrand	8	1	-10.9272
chr11	59824352	59824378	protein_coding	Pemt	intron	ENSMUSG00000000301	ProperStrand	36	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.5896
chr16	39840869	39840959	LTR	MTE-int	MaLR	chr16MTE-int39840867	ProperStrand	1	chr16	39840568	39840668	LTR	ORR1E	MaLR	chr16ORR1E39840519	ProperStrand	1	1	-inf
chr10	78008768	78008841	LTR	RLTR21	ERVK	chr10RLTR2178008594	ProperStrand	1	chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr8	40551630	40551646	SINE	PB1D10	Alu	chr8PB1D1040551559	NonProperStrand	2	chr11	22828805	22828941	protein_coding	Commd1	intron	ENSMUSG00000051355	ProperStrand	127	2	-inf
chr4	132246534	132246553	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr13	44869604	44869664	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.3758
chr1	71612055	71612145	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	chr13	9299816	9299916	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-8.9975
chr10	51521896	51521926	LINE	Lx7	L1	chr10Lx751521251	ProperStrand	8	chr6	137745552	137745610	protein_coding	Dera	intron	ENSMUSG00000030225	ProperStrand	23	1	-18.1293
chr11	109011821	109011855	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	12383832	12383856	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	1	-4.3252
chr7	112889419	112889496	protein_coding-noncoding	Ilk	utr5	ENSMUSG00000030890	ProperStrand	1	chr7	112886727	112886804	protein_coding	Ilk	intron	ENSMUSG00000030890	ProperStrand	16	1	-inf
chr5	115563389	115563410	protein_coding	Acads	intron	ENSMUSG00000029545	NonProperStrand	165	chr7	119869365	119869447	protein_coding	Tead1	intron	ENSMUSG00000055320	NonProperStrand	51	1	-10.3199
chr13	60665541	60665571	LTR	MTB	MaLR	chr13MTB60665202	ProperStrand	1	chr15	93314678	93314794	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	1	-inf
chr4	125711869	125711885	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	chr16	44206825	44206889	protein_coding	Gm608	intron	ENSMUSG00000068284	ProperStrand	29	1	-13.5966
chr4	136051181	136051198	protein_coding	Luzp1	intron	ENSMUSG00000001089	NonProperStrand	42	chr6	64501046	64501063	protein_coding	Grid2	intron	ENSMUSG00000071424	NonProperStrand	44	1	-13.3698
chr7	75408949	75409039	protein_coding	Pgpep1l	utr5	ENSMUSG00000030553	ProperStrand	3	chr7	75887639	75887739	protein_coding	Arrdc4	intron	ENSMUSG00000042659	ProperStrand	1	1	-inf
chr3	34046092	34046472	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr2	5379277	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.4629
chr11	43540836	43540915	SINE	B1_Mur1	Alu	chr11B1_Mur143540839	NonProperStrand	1	chr9	78478853	78479012	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-inf
chrX	38419384	38419429	LINE	L2b	L2	chrXL2b38419168	NonProperStrand	1	chrX	38405668	38405773	LINE	Lx7	L1	chrXLx738405198	ProperStrand	1	1	-inf
chr17	39846870	39846933	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	65602888	65602954	LTR	LTR50	ERVL	chr17LTR5065602853	NonProperStrand	1	1	-inf
chr17	39847037	39847136	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	47704818	47704838	LTR	MTC	MaLR	chr18MTC47704551	NonProperStrand	1	1	-inf
chr7	28317088	28317266	protein_coding	Pld3	utr3	ENSMUSG00000003363	ProperStrand	44	chr7	28316038	28316066	protein_coding	Hipk4	utr3	ENSMUSG00000040424	NonProperStrand	21	1	-14.7737
chr17	39846316	39846976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	80717360	80723735	protein_coding	Matk	intron	ENSMUSG00000004933	NonProperStrand	27	5	-4.7197
chr16	37717774	37717874	LINE	L1_Mus2	L1	chr16L1_Mus237716955	ProperStrand	1	chr16	37568178	37568268	protein_coding	Rabl3	intron	ENSMUSG00000022827	ProperStrand	16	1	-inf
chr4	95488338	95488428	protein_coding-noncoding	Fggy	utr5	ENSMUSG00000028573	NonProperStrand	1	chr4	95488177	95488277	protein_coding	Fggy	utr3	ENSMUSG00000028573	NonProperStrand	15	1	-inf
chr1	113904090	113904233	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	16	chr2	5379245	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	3	-16.3707
chr11	50382585	50382715	LINE	L1MA5	L1	chr11L1MA550382333	NonProperStrand	5	chr17	39847028	39847046	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr3	16257746	16257765	LINE	L1Md_T	L1	chr3L1Md_T16251437	ProperStrand	1	chr9	123462046	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	24155853	24155928	LINE	L1_Mus3	L1	chr17L1_Mus324155551	ProperStrand	2	chr9	123461977	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847041	39847154	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	45026491	45026526	LTR	ORR1D2	MaLR	chr8ORR1D245026316	NonProperStrand	1	1	-inf
chr3	89099307	89099335	SINE	B2_Mm2	B2	chr3B2_Mm289099157	NonProperStrand	1	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr6	92114029	92114052	protein_coding	Nr2c2	intron	ENSMUSG00000005893	ProperStrand	51	chr16	14396737	14396855	protein_coding	Abcc1	intron	ENSMUSG00000023088	ProperStrand	122	1	-10.9245
chr5	30060682	30060772	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr13	31485217	31485316	lincRNA	Gm11376	intron	ENSMUSG00000087140	ProperStrand	5	3	-inf
chr15	33060637	33060737	protein_coding	Pgcp	intron	ENSMUSG00000039007	NonProperStrand	5	chr15	33185614	33185704	protein_coding	Pgcp	intron	ENSMUSG00000039007	ProperStrand	10	1	-22.6756
chr8	44942433	44942464	LINE	Lx4B	L1	chr8Lx4B44942371	ProperStrand	1	chr17	39846656	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr15	85177762	85177786	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-5.2050
chr1	192745569	192745640	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr1	131800705	131800727	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-9.4141
chr17	39846753	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	78710847	78710889	SINE	RSINE1	B4	chr8RSINE178710832	NonProperStrand	1	1	-inf
chr5	146261162	146261189	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	124863381	124863398	protein_coding	Sbno1	intron	ENSMUSG00000038095	NonProperStrand	18	1	-7.4564
chr3	153627306	153627362	LTR	RLTR20A2	ERVK	chr3RLTR20A2153627244	ProperStrand	1	chr13	97190561	97190613	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr13	13467182	13467282	protein_coding	Gpr137b	intron	ENSMUSG00000021306	NonProperStrand	23	chr14	33968044	33968134	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	2	-19.4503
chr12	59040478	59040520	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr17	32197879	32197989	protein_coding	Rrp1b	utr3	ENSMUSG00000058392	NonProperStrand	36	1	-11.0603
chr17	39847889	39847959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	94314614	94314693	LTR	MTEb	MaLR	chr8MTEb94314549	NonProperStrand	1	1	-inf
chr4	19549993	19550072	protein_coding	Wwp1	intron	ENSMUSG00000041058	ProperStrand	17	chr17	30459618	30459682	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-9.7881
chr16	42902419	42902437	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr12	76225923	76226064	protein_coding	Kcnh5	intron	ENSMUSG00000034402	NonProperStrand	68	1	-8.3895
chr2	39384414	39384431	LTR	IAPEz-int	ERVK	chr2IAPEz-int39383001	NonProperStrand	4	chr2	127818082	127818165	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	1	-18.5642
chr17	39847326	39847364	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	8109532	8112317	protein_coding	Nup155	utr3	ENSMUSG00000022142	ProperStrand	9	1	-3.1539
chr14	40606370	40606460	LTR	RLTR25A	ERVK	chr14RLTR25A40605433	NonProperStrand	1	chr14	40606788	40606888	SINE	B1_Mm	Alu	chr14B1_Mm40606753	ProperStrand	1	1	-inf
chr17	39843784	39843808	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	121308253	121308287	protein_coding	Fn3k	intron	ENSMUSG00000025175	ProperStrand	37	1	-3.8677
chrX	164940576	164940663	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	53	chr11	58129641	58129711	protein_coding	Zfp672	exon	ENSMUSG00000049755	ProperStrand	5	1	-17.4741
chr5	138262918	138263050	protein_coding	Zcwpw1	intron	ENSMUSG00000037108	NonProperStrand	16	chr5	138263330	138263355	protein_coding	Pilra	utr3	ENSMUSG00000046245	ProperStrand	9	1	-18.8138
chr4	18771273	18771373	processed_transcript	Gm11867	.	ENSMUSG00000087402	NonProperStrand	11	chr4	18771372	18771462	pseudogene	Gm11868	.	ENSMUSG00000050550	ProperStrand	1	1	-inf
chr17	39843678	39843710	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	52478457	52481690	protein_coding	Smc2	intron	ENSMUSG00000028312	ProperStrand	32	2	-6.2883
chrX	102185651	102186486	LINE	L1_Mus1	L1	chrXL1_Mus1102185986	ProperStrand	15	chrX	102186525	102187402	SINE	PB1D10	Alu	chrXPB1D10102187362	NonProperStrand	5	2	-inf
chr12	54696812	54696946	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr9	86699124	86699143	protein_coding	Snap91	intron	ENSMUSG00000033419	ProperStrand	34	1	-11.5262
chr11	51995048	51995173	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.9324
chr15	77188174	77188274	LTR	MLT1I	MaLR	chr15MLT1I77188014	ProperStrand	1	chr15	77188283	77188371	SINE	B4A	B4	chr15B4A77188278	ProperStrand	1	1	-inf
chr6	94274898	94274966	SINE	B4A	B4	chr6B4A94274734	NonProperStrand	1	chr6	94213047	94213125	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-inf
chr5	146261252	146261292	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr12	104436292	104436342	protein_coding	Prima1	intron	ENSMUSG00000041669	NonProperStrand	8	1	-15.5072
chr17	39844665	39844700	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr15	37354397	37354449	processed_transcript	Gm15941	.	ENSMUSG00000086992	NonProperStrand	5	1	-7.4813
chr11	120346401	120346423	protein_coding-noncoding	Mrpl12	utr5	ENSMUSG00000039640	NonProperStrand	20	chr6	38175035	38175158	protein_coding	D630045J12Rik	intron	ENSMUSG00000063455	ProperStrand	34	1	-15.4099
chr1	54540782	54540807	protein_coding	Pgap1	intron	ENSMUSG00000070889	NonProperStrand	6	chr8	22057511	22057602	protein_coding	Gm6040	intron	ENSMUSG00000071165	ProperStrand	2	1	-inf
chr17	4082116	4082206	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr6	20188932	20189032	LINE	Lx2B	L1	chr6Lx2B20188217	NonProperStrand	1	1	-inf
chr19	22851982	22852014	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	36	chrX	141249677	141249694	protein_coding	Zcchc16	intron	ENSMUSG00000071679	NonProperStrand	8	1	-17.2495
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr16	11251622	11251648	protein_coding	Gspt1	intron	ENSMUSG00000062203	ProperStrand	60	1	-12.3912
chr4	84503481	84503581	SINE	B1_Mur3	Alu	chr4B1_Mur384503449	NonProperStrand	1	chr4	84503705	84503795	SINE	B2_Mm2	B2	chr4B2_Mm284503586	NonProperStrand	1	1	-inf
chr17	39843592	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr19	36084269	36084338	protein_coding	Htr7	intron	ENSMUSG00000024798	NonProperStrand	9	1	-6.2068
chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr11	113275739	113275806	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-6.6967
chr1	71602444	71603706	SINE	B1F1	Alu	chr1B1F171602456	ProperStrand	2	chr1	71603746	71603836	protein_coding	Atic	utr5	ENSMUSG00000026192	NonProperStrand	79	2	-inf
chr17	4082262	4082300	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr5	114851974	114852003	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-4.9948
chr11	54690584	54690610	LINE	L1MB7	L1	chr11L1MB754690486	ProperStrand	3	chr17	39845992	39846049	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-7.9693
chr17	39846017	39846138	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr14	12450758	12450775	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	30	1	-3.1847
chr2	32814953	32817311	protein_coding	Lrsam1	intron	ENSMUSG00000026792	ProperStrand	24	chr2	32817240	32818433	protein_coding	Rpl12	utr5	ENSMUSG00000038900	NonProperStrand	3	3	-inf
chr3	106721428	106721477	LINE	L1_Mur2	L1	chr3L1_Mur2106721300	ProperStrand	1	chr3	106721597	106721677	LINE	L1_Mur2	L1	chr3L1_Mur2106721567	ProperStrand	1	1	-inf
chr6	3201469	3201496	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	94789929	94789946	SINE	PB1D10	Alu	chr10PB1D1094789915	NonProperStrand	4	1	-8.3508
chr12	112746202	112746292	LTR	MTD-int	MaLR	chr12MTD-int112746184	NonProperStrand	1	chr17	39847667	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	114830350	114830420	LTR	MLT2B1	ERVL	chr8MLT2B1114830357	NonProperStrand	1	chr15	57975972	57976029	protein_coding	Wdyhv1	intron	ENSMUSG00000022359	NonProperStrand	10	1	-inf
chr17	39843815	39843909	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr13	89297900	89297918	protein_coding	Edil3	intron	ENSMUSG00000034488	NonProperStrand	21	1	-4.9585
chr11	46071728	46071869	protein_coding	Cyfip2	intron	ENSMUSG00000020340	NonProperStrand	77	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-6.0785
chr15	67104200	67104217	LINE	L1MC4	L1	chr15L1MC467104147	NonProperStrand	1	chr10	61344236	61344326	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-inf
chr6	3201474	3201517	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	70038627	70038675	protein_coding	Gm9755	exon	ENSMUSG00000030735	ProperStrand	2	1	-10.1342
chr19	17352078	17352168	Low_complexity	CT-rich	Low_complexity	chr19CT-rich17352081	NonProperStrand	2	chr19	17351930	17352030	Simple_repeat	(TCTCC)n	Simple_repeat	chr19(TCTCC)n17351901	NonProperStrand	2	2	-inf
chr17	36852577	36852629	LINE	L1Md_T	L1	chr17L1Md_T36851179	ProperStrand	2	chr13	97190561	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr12	102338437	102338466	LTR	IAPEz-int	ERVK	chr12IAPEz-int102338366	ProperStrand	1	chr9	96722679	96722802	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n96722607	NonProperStrand	1	1	-inf
chr10	105528664	105528770	LINE	L1Md_T	L1	chr10L1Md_T105524899	ProperStrand	1	chr17	39847636	39847675	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847277	39848063	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	138309602	138312090	protein_coding	Pla2g2f	intron	ENSMUSG00000028749	NonProperStrand	14	2	-4.2566
chr17	39846452	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	141447644	141447928	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n141447615	ProperStrand	7	2	-4.6854
chrX	105905586	105905642	LINE	L1Md_F2	L1	chrXL1Md_F2105904770	NonProperStrand	1	chr5	146261160	146261206	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr12	116698014	116698031	LINE	Lx2B	L1	chr12Lx2B116697762	NonProperStrand	1	chr17	39847318	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr13	60654302	60654402	SINE	B3	B2	chr13B360654288	ProperStrand	2	chr13	60654186	60654276	SINE	B3A	B2	chr13B3A60654141	NonProperStrand	2	2	-inf
chr14	65521115	65521143	protein_coding	Hmbox1	intron	ENSMUSG00000021972	NonProperStrand	2	chr1	63584176	63584209	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-15.5176
chr2	29929579	29929628	SINE	B3A	B2	chr2B3A29929526	NonProperStrand	1	chr6	51478554	51478613	protein_coding	Snx10	intron	ENSMUSG00000038301	ProperStrand	60	1	-inf
chr2	166951008	166951308	protein_coding	Kcnb1	intron	ENSMUSG00000050556	ProperStrand	24	chr11	105483380	105483399	protein_coding	Tanc2	intron	ENSMUSG00000053580	NonProperStrand	26	2	-inf
chr10	128086401	128088328	lincRNA	Gm17336	exon	ENSMUSG00000091431	ProperStrand	114	chr13	44869618	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.2943
chr10	36631275	36631405	LTR	ORR1C2	MaLR	chr10ORR1C236631159	NonProperStrand	1	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-inf
chr11	50265792	50265906	SINE	B2_Mm2	B2	chr11B2_Mm250265752	ProperStrand	1	chr11	50292140	50292163	Simple_repeat	(CATA)n	Simple_repeat	chr11(CATA)n50292145	NonProperStrand	1	1	-inf
chr15	99737476	99737549	SINE	B2_Mm1a	B2	chr15B2_Mm1a99737394	NonProperStrand	2	chr15	99771883	99771941	protein_coding	1700030F18Rik	intron	ENSMUSG00000045350	ProperStrand	53	2	-inf
chr1	36083415	36083515	LTR	MLT1F	MaLR	chr1MLT1F36083422	NonProperStrand	1	chr1	36083210	36083300	SINE	B4	B4	chr1B436083224	NonProperStrand	2	1	-inf
chr5	146261005	146261038	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	74634948	74634964	protein_coding	Myo5b	intron	ENSMUSG00000025885	ProperStrand	25	1	-6.7922
chr12	110803092	110803214	lincRNA	Meg3	exon	ENSMUSG00000021268	ProperStrand	59	chr16	35956924	35956940	protein_coding	Parp9	exon	ENSMUSG00000022906	NonProperStrand	1	1	-inf
chr17	39846755	39846786	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	36111294	36111310	protein_coding	Prr3	intron	ENSMUSG00000038500	ProperStrand	2	1	-5.3533
chr3	49118737	49118779	Simple_repeat	(TTTTG)n	Simple_repeat	chr3(TTTTG)n49118725	ProperStrand	1	chr4	117058792	117058841	protein_coding	Rnf220	intron	ENSMUSG00000028677	NonProperStrand	93	1	-inf
chr10	40258542	40258573	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr16	48571553	48571594	protein_coding	Morc1	intron	ENSMUSG00000022652	ProperStrand	96	1	-4.4503
chr5	27047901	27047992	LINE	L1_Mus2	L1	chr5L1_Mus227047328	ProperStrand	8	chr7	129447287	129447343	protein_coding	Prkcb	intron	ENSMUSG00000052889	ProperStrand	36	1	-17.2733
chr4	62922197	62922298	protein_coding	Col27a1	intron	ENSMUSG00000045672	ProperStrand	3	chr4	57492823	57492913	protein_coding	Palm2	intron	ENSMUSG00000090053	ProperStrand	22	1	-21.7474
chr11	32539610	32539653	SINE	B1_Mur4	Alu	chr11B1_Mur432539542	NonProperStrand	1	chr4	34670412	34670465	protein_coding	1700003M02Rik	intron	ENSMUSG00000028294	NonProperStrand	23	1	-inf
chr10	18634607	18634640	LINE	Lx5	L1	chr10Lx518634040	ProperStrand	1	chr17	39847244	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39845984	39846048	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr1	93454775	93454811	protein_coding	Asb1	utr3	ENSMUSG00000026311	NonProperStrand	27	1	-3.3782
chr11	6528030	6528085	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.7128
chr17	39846580	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	54654567	54656295	protein_coding	4833439L19Rik	exon	ENSMUSG00000025871	NonProperStrand	16	3	-3.8697
chr4	141124717	141124793	SINE	B1_Mm	Alu	chr4B1_Mm141124659	NonProperStrand	1	chr4	141122656	141122728	SINE	B2_Mm2	B2	chr4B2_Mm2141122630	ProperStrand	2	1	-inf
chr3	95163895	95163995	LTR	MTA_Mm	MaLR	chr3MTA_Mm95163916	ProperStrand	2	chr3	95163769	95163859	LTR	RLTR6-int	ERV1	chr3RLTR6-int95163737	ProperStrand	4	2	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr10	61425570	61425650	protein_coding	Col13a1	intron	ENSMUSG00000058806	NonProperStrand	58	1	-10.3474
chr9	73086772	73086862	LTR	MT2B	ERVL	chr9MT2B73086457	ProperStrand	1	chr9	73086909	73087009	LTR	RMER17B	ERVK	chr9RMER17B73086934	NonProperStrand	1	1	-inf
chr11	3224645	3224745	lincRNA	Gm12592	intron	ENSMUSG00000053263	NonProperStrand	3	chr11	3242637	3243191	protein_coding	Pik3ip1	utr3	ENSMUSG00000034614	ProperStrand	11	1	-inf
chr10	62879650	62879728	Simple_repeat	(CAAAC)n	Simple_repeat	chr10(CAAAC)n62879645	NonProperStrand	1	chr10	62839732	62839800	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	1	-inf
chr6	108317246	108317272	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr2	62974410	62974434	protein_coding	Kcnh7	intron	ENSMUSG00000059742	NonProperStrand	29	1	-9.8962
chr19	5395584	5395602	LINE	L1M2	L1	chr19L1M25395364	ProperStrand	3	chr4	98736993	98737072	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	1	-17.1730
chr15	14343113	14343213	LINE	L1_Mus2	L1	chr15L1_Mus214342979	ProperStrand	1	chr15	14343399	14343489	LINE	L1_Mus2	L1	chr15L1_Mus214343375	NonProperStrand	1	1	-inf
chr11	29502734	29502824	Simple_repeat	(GAA)n	Simple_repeat	chr11(GAA)n29502649	NonProperStrand	1	chr11	29502415	29502515	pseudogene	Gm12091	.	ENSMUSG00000085893	ProperStrand	1	1	-inf
chr7	110049674	110051015	LINE	L1Md_T	L1	chr7L1Md_T110050797	NonProperStrand	1	chr6	135799194	135799212	protein_coding	Grin2b	intron	ENSMUSG00000030209	ProperStrand	8	1	-inf
chr17	39843865	39847626	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	139487397	139487482	lincRNA	Gm13028	intron	ENSMUSG00000087628	ProperStrand	21	1	-4.9585
chr11	102481471	102481533	lincRNA	2810433D01Rik	exon	ENSMUSG00000086283	ProperStrand	4	chr7	15949473	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	1	-20.0437
chr2	179587674	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr7	28894153	28894195	protein_coding	Fcgbp	intron	ENSMUSG00000047730	NonProperStrand	69	1	-10.3161
chr11	50324565	50324597	misc_RNA	7SK	.	ENSMUSG00000089366	ProperStrand	1	chr9	110281291	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	chr7	112847428	112847525	protein_coding	Dnhd1	intron	ENSMUSG00000030882	ProperStrand	238	1	-11.2007
chr2	98667127	98667227	LINE	L1Md_F2	L1	chr2L1Md_F298667138	ProperStrand	27	chr2	98662846	98662936	LINE	L1_Mus2	L1	chr2L1_Mus298662782	NonProperStrand	1	1	-inf
chr8	116031074	116031174	LINE	Lx6	L1	chr8Lx6116031025	NonProperStrand	1	chr8	116031269	116031359	LTR	RLTR10B2	ERVK	chr8RLTR10B2116031149	NonProperStrand	1	1	-inf
chr11	21352814	21352914	LINE	Lx3B	L1	chr11Lx3B21352543	NonProperStrand	2	chr11	21352931	21353021	LINE	Lx3B	L1	chr11Lx3B21352924	NonProperStrand	3	2	-inf
chr17	39847552	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	102319273	102319303	LTR	MLT1A-int	MaLR	chr7MLT1A-int102318993	ProperStrand	1	1	-inf
chr15	4060579	4060642	protein_coding	Oxct1	intron	ENSMUSG00000022186	ProperStrand	51	chr9	42442877	42442893	protein_coding	Grik4	intron	ENSMUSG00000032017	ProperStrand	153	1	-10.4710
chr9	103354182	103354204	protein_coding	Bfsp2	intron	ENSMUSG00000032556	ProperStrand	72	chr4	145458969	145459085	protein_coding	Gm13235	intron	ENSMUSG00000078500	ProperStrand	7	1	-16.0795
chr5	146261285	146261303	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	67608333	67608426	protein_coding	C2cd4b	exon	ENSMUSG00000091956	NonProperStrand	1	1	-inf
chrX	52509339	52509429	LINE	L1Md_F3	L1	chrXL1Md_F352508043	NonProperStrand	1	chrX	52509625	52509725	LINE	L1_Mm	L1	chrXL1_Mm52509497	ProperStrand	1	1	-inf
chr9	63238218	63238277	SINE	B3	B2	chr9B363238213	ProperStrand	2	chr9	63237913	63238001	SINE	RSINE1	B4	chr9RSINE163237881	ProperStrand	2	2	-inf
chr13	113602440	113602558	protein_coding	Ppap2a	intron	ENSMUSG00000021759	NonProperStrand	111	chr8	107060239	107060260	protein_coding	Car7	intron	ENSMUSG00000031883	ProperStrand	12	1	-14.0713
chr12	9460354	9460454	SINE	B3	B2	chr12B39460236	ProperStrand	1	chr12	9460859	9460949	SINE	B3	B2	chr12B39460711	ProperStrand	1	1	-inf
chr2	31154492	31154524	LTR	ORR1C1	MaLR	chr2ORR1C131154399	NonProperStrand	1	chr2	31155880	31155922	SINE	RSINE1	B4	chr2RSINE131155851	NonProperStrand	1	1	-inf
chr11	115351818	115351918	protein_coding	Nt5c	utr3	ENSMUSG00000020736	NonProperStrand	1	chr11	115351673	115351763	protein_coding	Armc7	utr3	ENSMUSG00000057219	ProperStrand	1	1	-inf
chr1	118984992	118985082	LINE	Lx4A	L1	chr1Lx4A118985015	ProperStrand	3	chr1	118987034	118987134	LTR	RLTR10-int	ERVK	chr1RLTR10-int118986055	NonProperStrand	34	2	-20.5930
chr6	3201479	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	2	-4.7657
chr13	46294006	46294106	LINE	L1Md_F2	L1	chr13L1Md_F246293416	NonProperStrand	1	chr3	71050559	71050649	LINE	L1_Mur3	L1	chr3L1_Mur371050374	ProperStrand	1	1	-inf
chr17	39845833	39846174	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr17	39843915	39846294	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	64	-10.1724
chr11	69643132	69643161	protein_coding	Nlgn2	intron	ENSMUSG00000051790	ProperStrand	4	chr17	30690452	30690513	protein_coding	Btbd9	intron	ENSMUSG00000062202	NonProperStrand	156	1	-15.7796
chr4	82310593	82310626	protein_coding	Nfib	intron	ENSMUSG00000008575	ProperStrand	35	chr11	104549316	104549427	protein_coding	Gm11639	intron	ENSMUSG00000040838	NonProperStrand	2	1	-19.9529
chr16	18249521	18249621	protein_coding-noncoding	Trmt2a	utr5	ENSMUSG00000022721	NonProperStrand	2	chr16	18249675	18249765	protein_coding	Trmt2a	exon	ENSMUSG00000022721	NonProperStrand	8	2	-inf
chr19	5800793	5800868	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr3	154628186	154628251	protein_coding	Tnni3k	intron	ENSMUSG00000040086	NonProperStrand	21	1	-6.5006
chr6	115775083	115775206	antisense	BC060267	.	ENSMUSG00000030321	NonProperStrand	8	chr9	123462045	123462076	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr1	168340845	168340886	SINE	B3A	B2	chr1B3A168340827	ProperStrand	1	chr1	168339520	168339586	protein_coding	Pogk	utr5	ENSMUSG00000040596	ProperStrand	7	1	-inf
chr9	123461882	123461928	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr19	47089956	47090059	protein_coding	Ina	exon	ENSMUSG00000034336	NonProperStrand	2	1	-8.0983
chr4	125041049	125042674	SINE	B4	B4	chr4B4125040907	NonProperStrand	2	chr4	125043590	125043609	SINE	B4A	B4	chr4B4A125043332	ProperStrand	2	1	-19.8939
chr17	39846766	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	7675195	7676241	LTR	MMERGLN-int	ERV1	chr6MMERGLN-int7669533	NonProperStrand	9	2	-3.9140
chr19	10209947	10210037	SINE	B4A	B4	chr19B4A10209916	NonProperStrand	1	chr19	10209786	10209886	SINE	ID_B1	B4	chr19ID_B110209759	NonProperStrand	1	1	-inf
chr9	95657331	95657358	protein_coding	Pls1	intron	ENSMUSG00000049493	NonProperStrand	16	chr4	56894274	56894408	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	140	1	-13.0093
chr9	93699694	93699722	LTR	MTB_Mm	MaLR	chr9MTB_Mm93699335	ProperStrand	1	chr1	10219888	10220008	protein_coding	Arfgef1	intron	ENSMUSG00000067851	ProperStrand	23	1	-inf
chr17	26786343	26786362	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr1	133660401	133660467	protein_coding	Slc26a9	exon	ENSMUSG00000042268	NonProperStrand	64	1	-10.1494
chr9	123462128	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	23836185	23836281	protein_coding	Kcnh2	intron	ENSMUSG00000038319	ProperStrand	11	1	-4.1956
chr13	14623639	14625205	LTR	MERVL_2A-int	ERVL	chr13MERVL_2A-int14622520	ProperStrand	1	chr17	39846380	39846396	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	5800857	5800925	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr16	32444187	32444249	protein_coding	Pcyt1a	intron	ENSMUSG00000005615	ProperStrand	19	3	-15.4005
chr17	39846847	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	11481634	11481681	protein_coding	Ms4a4c	intron	ENSMUSG00000024675	NonProperStrand	1	1	-inf
chr14	75847923	75847983	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr3	101589092	101589794	LTR	MTD	MaLR	chr3MTD101589758	ProperStrand	6	1	-18.2959
chr13	55567898	55567949	protein_coding	Prr7	intron	ENSMUSG00000034686	NonProperStrand	61	chr8	127207626	127207733	protein_coding	Ttc13	intron	ENSMUSG00000037300	NonProperStrand	38	1	-12.9125
chr17	39846750	39846839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	73195713	73195729	LTR	MERVL_2A-int	ERVL	chr6MERVL_2A-int73194477	ProperStrand	1	1	-inf
chr15	21524272	21524371	LINE	Lx6	L1	chr15Lx621522995	ProperStrand	1	chr15	21524619	21524709	Low_complexity	CT-rich	Low_complexity	chr15CT-rich21524557	NonProperStrand	1	1	-inf
chr11	73033787	73033827	protein_coding	Shpk	intron	ENSMUSG00000005951	ProperStrand	22	chr17	84192327	84193360	protein_coding	Mta3	intron	ENSMUSG00000055817	NonProperStrand	65	1	-13.9013
chr14	75847904	75847987	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr5	146261010	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	2	-10.4303
chr12	111224871	111224971	LINE	L1ME1	L1	chr12L1ME1111224866	NonProperStrand	1	chr12	111224596	111224686	SINE	B4A	B4	chr12B4A111224538	NonProperStrand	1	1	-inf
chr10	31822513	31822532	LTR	RLTR12B	ERVK	chr10RLTR12B31822482	NonProperStrand	1	chr15	32636694	32636791	LTR	MLT1A0	MaLR	chr15MLT1A032636700	ProperStrand	1	1	-inf
chr5	146261139	146261199	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr13	103717603	103717688	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	1	-3.4485
chr17	39846131	39846207	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr18	46236046	46236130	SINE	B1_Mus1	Alu	chr18B1_Mus146235968	NonProperStrand	1	1	-inf
chr10	43295553	43295653	SINE	MIRc	MIR	chr10MIRc43295558	ProperStrand	2	chr17	8380465	8380555	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	ProperStrand	10	2	-inf
chr9	15315209	15315316	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	chr12	105031148	105031193	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	1	-7.6436
chr10	112474236	112474336	LINE	Lx7	L1	chr10Lx7112473932	ProperStrand	1	chr9	68766566	68766656	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-inf
chr11	109011747	109011780	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	120816852	120816960	protein_coding	Slc16a3	intron	ENSMUSG00000025161	NonProperStrand	149	1	-4.3379
chr10	82113249	82113319	protein_coding	Tdg	utr3	ENSMUSG00000034674	ProperStrand	4	chr8	83954901	83954984	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-15.7609
chr12	110485795	110485861	LINE	L1_Mus1	L1	chr12L1_Mus1110484847	ProperStrand	31	chr6	3201493	3201534	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-4.1133
chr11	120591534	120591624	protein_coding-noncoding	Cbr2	utr3	ENSMUSG00000025150	NonProperStrand	1	chr11	120591725	120591825	protein_coding	Cbr2	exon	ENSMUSG00000025150	NonProperStrand	2	1	-inf
chr2	5379242	5379356	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-5.7728
chr2	90395139	90395184	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr1	190098750	190098766	protein_coding	Ush2a	intron	ENSMUSG00000026609	NonProperStrand	33	1	-10.9278
chr1	145150631	145150721	LINE	L1_Mus3	L1	chr1L1_Mus3145150484	ProperStrand	1	chr1	145150215	145150315	LTR	MTB_Mm	MaLR	chr1MTB_Mm145150225	ProperStrand	1	1	-inf
chr19	8837983	8838002	protein_coding	Nxf1	intron	ENSMUSG00000010097	NonProperStrand	2	chr2	32278926	32279036	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	1	-19.6352
chr14	42357606	42357681	LINE	Lx2	L1	chr14Lx242355988	NonProperStrand	1	chr19	6057675	6057761	protein_coding	Mrpl49	utr5	ENSMUSG00000007338	ProperStrand	8	1	-inf
chr8	25991716	25991835	protein_coding	Adam32	intron	ENSMUSG00000037437	ProperStrand	31	chr10	44215478	44217344	protein_coding	Prdm1	intron	ENSMUSG00000038151	ProperStrand	2	1	-20.3967
chr18	28359081	28359181	LINE	Lx7	L1	chr18Lx728358865	ProperStrand	1	chr18	28358751	28358841	Simple_repeat	(TAGA)n	Simple_repeat	chr18(TAGA)n28358774	ProperStrand	1	1	-inf
chr18	37808788	37808805	LTR	RLTR6-int	ERV1	chr18RLTR6-int37808781	ProperStrand	1	chr2	119926433	119926575	protein_coding	Ehd4	intron	ENSMUSG00000027293	NonProperStrand	78	1	-inf
chr19	36328979	36329079	LTR	MLT2F	ERVL	chr19MLT2F36328775	ProperStrand	1	chr19	36329418	36329508	SINE	PB1D10	Alu	chr19PB1D1036329382	ProperStrand	1	1	-inf
chr10	40258543	40258599	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	132310694	132310760	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-3.1928
chr11	29703083	29703152	protein_coding	Eml6	exon	ENSMUSG00000044072	NonProperStrand	99	chr14	64820947	64821013	protein_coding	Msra	intron	ENSMUSG00000054733	ProperStrand	122	1	-9.5920
chr2	73150770	73152177	protein_coding	Scrn3	intron	ENSMUSG00000008226	NonProperStrand	24	chr2	73148199	73150761	protein_coding	Cir1	utr5	ENSMUSG00000041777	ProperStrand	15	2	-inf
chr14	50810524	50811829	LINE	L1_Mus3	L1	chr14L1_Mus350811446	NonProperStrand	1	chr14	50810148	50810523	LINE	L1_Rod	L1	chr14L1_Rod50809600	NonProperStrand	4	1	-inf
chr17	39847341	39847383	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	30651418	30651470	lincRNA	Gm12100	intron	ENSMUSG00000087474	ProperStrand	1	1	-inf
chr5	122871418	122871458	SINE	B1_Mur4	Alu	chr5B1_Mur4122871391	ProperStrand	1	chr5	122879392	122879504	protein_coding	Anapc7	intron	ENSMUSG00000029466	NonProperStrand	20	1	-inf
chr19	9893845	9893942	LINE	L1Md_F2	L1	chr19L1Md_F29892644	NonProperStrand	16	chr19	9893947	9893991	LINE	L1Md_T	L1	chr19L1Md_T9893937	NonProperStrand	3	2	-inf
chr9	101093527	101093586	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	NonProperStrand	66	chr2	119902897	119902984	protein_coding	Spnb5	intron	ENSMUSG00000074899	NonProperStrand	17	1	-14.3923
chr3	96578241	96578330	protein_coding	Rnf115	intron	ENSMUSG00000028098	NonProperStrand	25	chr1	131488949	131489049	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	2	-17.2960
chr13	23739460	23739531	LTR	MTA_Mm	MaLR	chr13MTA_Mm23739238	NonProperStrand	65	chr15	103245741	103245806	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	1	-11.6096
chr1	122357165	122357235	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr10	126994188	126994268	protein_coding	Lrp1	intron	ENSMUSG00000040249	NonProperStrand	55	1	-9.0833
chrX	73794831	73794948	LINE	L1Md_T	L1	chrXL1Md_T73791969	NonProperStrand	3	chr3	108666930	108666946	protein_coding	Fndc7	intron	ENSMUSG00000045326	NonProperStrand	10	1	-20.3377
chr16	62806644	62811910	protein_coding	Arl13b	intron	ENSMUSG00000022911	ProperStrand	24	chr8	122791771	122791826	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-8.7729
chr17	39847174	39847212	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	54559224	54559322	SINE	RSINE1	B4	chr13RSINE154559206	ProperStrand	2	1	-6.5615
chr10	40258554	40258587	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	165809306	165809349	lincRNA	Gm11464	intron	ENSMUSG00000087351	NonProperStrand	32	1	-6.5975
chr8	65193222	65193312	LTR	RLTR25A	ERVK	chr8RLTR25A65192871	NonProperStrand	1	chr8	65193417	65193518	LTR	RLTR25A	ERVK	chr8RLTR25A65193258	NonProperStrand	1	1	-inf
chr2	152464770	152464869	LINE	Lx5	L1	chr2Lx5152464684	NonProperStrand	1	chr2	152464595	152464685	LTR	RMER20A	ERVK	chr2RMER20A152464314	NonProperStrand	1	1	-inf
chr17	4082170	4082195	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chrX	47831930	47832028	LINE	L1_Mur2	L1	chrXL1_Mur247831709	ProperStrand	1	1	-inf
chr6	148855489	148855589	SINE	B1_Mm	Alu	chr6B1_Mm148855459	ProperStrand	2	chr6	148850520	148850610	SINE	B4A	B4	chr6B4A148850441	NonProperStrand	2	2	-inf
chr5	120197952	120198007	SINE	B1_Mus1	Alu	chr5B1_Mus1120197963	NonProperStrand	4	chr15	98931522	98931587	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	1	-18.6637
chr9	95776713	95776755	protein_coding	Atr	intron	ENSMUSG00000032409	NonProperStrand	12	chr8	89053871	89053977	protein_coding	Abcc12	intron	ENSMUSG00000036872	NonProperStrand	35	1	-16.4121
chr3	144435419	144435519	LINE	L1Md_F2	L1	chr3L1Md_F2144435277	ProperStrand	4	chr3	144437598	144437688	LINE	L1Md_T	L1	chr3L1Md_T144437420	ProperStrand	11	4	-inf
chr5	31175385	31175485	protein_coding-noncoding	Tmem214	utr5	ENSMUSG00000038828	ProperStrand	1	chr5	31175517	31175607	protein_coding	Tmem214	intron	ENSMUSG00000038828	ProperStrand	1	1	-inf
chr1	9940616	9940706	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr8	123300900	123301000	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-9.1475
chr17	39847897	39847920	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	84903402	84903518	protein_coding	Fam69c	intron	ENSMUSG00000047992	ProperStrand	3	1	-4.3512
chr18	27583609	27583628	LINE	L1_Mus3	L1	chr18L1_Mus327583056	ProperStrand	1	chr17	39847222	39847270	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	91644549	91644687	LINE	L1M4c	L1	chr8L1M4c91644566	ProperStrand	11	chr8	91644451	91644541	LINE	Lx8	L1	chr8Lx891644318	ProperStrand	8	6	-inf
chr13	89697510	89697530	protein_coding	Hapln1	intron	ENSMUSG00000021613	ProperStrand	3	chr9	123461979	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr15	75807283	75807373	DNA	URR1B	MER1_type	chr15URR1B75807214	ProperStrand	1	chr15	75807098	75807198	SINE	PB1D10	Alu	chr15PB1D1075807096	ProperStrand	1	1	-inf
chr7	90208576	90208644	SINE	B1_Mm	Alu	chr7B1_Mm90208486	ProperStrand	3	chr15	53176491	53176543	protein_coding	Ext1	exon	ENSMUSG00000061731	ProperStrand	117	2	-19.3401
chr1	65571921	65571940	LTR	RLTR19-int	ERVK	chr1RLTR19-int65571878	ProperStrand	1	chr17	56598945	56599001	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	1	-inf
chr7	116245929	116245998	LTR	MLT1H	MaLR	chr7MLT1H116245846	ProperStrand	3	chr7	116243477	116243517	LTR	MTEa	MaLR	chr7MTEa116243182	NonProperStrand	4	1	-inf
chr3	152409054	152409087	protein_coding	Pigk	intron	ENSMUSG00000039047	ProperStrand	95	chr13	9338893	9339015	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-8.6287
chr7	12930799	12930841	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chrX	136740302	136740376	lincRNA	Gm15046	intron	ENSMUSG00000086441	ProperStrand	51	1	-11.7718
chr17	39848170	39848255	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	127021410	127021463	SINE	PB1D10	Alu	chr4PB1D10127021384	NonProperStrand	4	1	-6.6701
chr8	64849632	64849732	LINE	L1_Mus3	L1	chr8L1_Mus364849186	ProperStrand	2	chr8	64849761	64849851	LTR	ORR1A4	MaLR	chr8ORR1A464849703	ProperStrand	3	1	-20.8297
chr17	39847806	39847906	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	54953790	54953880	SINE	B2_Mm2	B2	chr4B2_Mm254953792	NonProperStrand	1	1	-inf
chr2	90865910	90866000	SINE	B3	B2	chr2B390865835	ProperStrand	2	chr8	12900720	12900913	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-16.0837
chr18	6509616	6509740	protein_coding	Epc1	intron	ENSMUSG00000024240	ProperStrand	56	chr5	135911236	135911258	protein_coding	Hip1	intron	ENSMUSG00000039959	ProperStrand	226	1	-9.5029
chr17	39846524	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	129201867	129201939	LTR	MTC	MaLR	chr2MTC129201535	ProperStrand	1	1	-inf
chr10	5914365	5914445	protein_coding	Rmnd1	utr5	ENSMUSG00000019763	NonProperStrand	1	chr7	27819796	27819866	protein_coding	Cyp2a12	intron	ENSMUSG00000060407	NonProperStrand	1	1	-inf
chr3	91098385	91098443	LINE	L1_Mur3	L1	chr3L1_Mur391098396	ProperStrand	1	chr17	39847552	39847642	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	121972871	121972941	LINE	Lx9	L1	chr10Lx9121972610	ProperStrand	1	chr17	39847177	39847259	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	55482758	55482834	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr3	153384612	153384694	protein_coding	St6galnac3	intron	ENSMUSG00000052544	ProperStrand	282	1	-9.8960
chr3	87906657	87906690	protein_coding	Iqgap3	intron	ENSMUSG00000028068	ProperStrand	72	chr9	110281284	110281333	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.1999
chr17	39844605	39844634	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr11	21557369	21557486	protein_coding	Wdpcp	intron	ENSMUSG00000020319	NonProperStrand	15	1	-5.1802
chr5	143909906	143909996	SINE	B2_Mm2	B2	chr5B2_Mm2143909881	ProperStrand	1	chr7	127444698	127444715	protein_coding	Abca14	intron	ENSMUSG00000062017	NonProperStrand	27	1	-inf
chr16	32362086	32362120	protein_coding	Ubxn7	intron	ENSMUSG00000053774	ProperStrand	53	chr13	77869789	77869827	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-12.0202
chr1	74973633	74973733	protein_coding	Ccdc108	exon	ENSMUSG00000047021	NonProperStrand	1	chr1	74967349	74967439	protein_coding	Ccdc108	intron	ENSMUSG00000047021	ProperStrand	15	1	-inf
chr17	24170429	24170456	LTR	RMER10A	ERVL	chr17RMER10A24170243	ProperStrand	1	chr17	24170568	24170605	SINE	B2_Mm1a	B2	chr17B2_Mm1a24170505	NonProperStrand	1	1	-inf
chr11	113167856	113167970	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	chr2	76711145	76711161	protein_coding	Ttn	exon	ENSMUSG00000051747	NonProperStrand	37	1	-9.9535
chr18	44404586	44404683	LINE	L1Md_T	L1	chr18L1Md_T44401773	ProperStrand	9	chr18	44401103	44401148	LTR	RMER12B	ERVK	chr18RMER12B44401080	ProperStrand	1	1	-inf
chr9	123461802	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr8	95877850	95888288	protein_coding	Ces1h	intron	ENSMUSG00000074156	ProperStrand	31	2	-4.1009
chr15	85396754	85396854	protein_coding	Wnt7b	intron	ENSMUSG00000022382	NonProperStrand	94	chr15	50667622	50667712	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	2	-17.6515
chr6	67281698	67281788	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr6	136820697	136821198	protein_coding	Mgp	exon	ENSMUSG00000030218	ProperStrand	7	1	-13.9849
chr4	44222020	44222137	protein_coding	Rnf38	intron	ENSMUSG00000035696	ProperStrand	57	chr12	38861381	38865556	protein_coding	Dgkb	intron	ENSMUSG00000036095	NonProperStrand	29	1	-13.5966
chr3	96976335	96976435	protein_coding	Acp6	intron	ENSMUSG00000028093	ProperStrand	2	chr3	97524279	97524369	protein_coding	Pde4dip	intron	ENSMUSG00000038170	NonProperStrand	39	1	-19.8733
chr17	39847659	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	137765254	137765285	SINE	B4A	B4	chr4B4A137765219	NonProperStrand	1	1	-inf
chr1	191372595	191396239	SINE	B4	B4	chr1B4191372586	NonProperStrand	1	chr13	44869573	44869637	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr19	4779835	4779878	SINE	B1_Mur2	Alu	chr19B1_Mur24779822	ProperStrand	1	chr5	92181981	92181997	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-inf
chr12	44273405	44273495	LINE	Lx3B	L1	chr12Lx3B44273411	ProperStrand	1	chr12	44273237	44273337	Simple_repeat	(TTC)n	Simple_repeat	chr12(TTC)n44273266	NonProperStrand	1	1	-inf
chr18	23730758	23730858	protein_coding	Dtna	intron	ENSMUSG00000024302	ProperStrand	32	chr14	33967483	33967573	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-12.0748
chr9	57595909	57595999	protein_coding	Edc3	intron	ENSMUSG00000038957	ProperStrand	18	chr19	38941880	38941980	protein_coding	Tbc1d12	intron	ENSMUSG00000048720	ProperStrand	51	1	-14.8014
chr5	104509889	104510025	protein_coding	Sparcl1	intron	ENSMUSG00000029309	NonProperStrand	16	chr6	113327538	113327554	protein_coding	Tada3	utr5	ENSMUSG00000048930	NonProperStrand	28	1	-16.2767
chr5	124547075	124547113	LTR	RMER19B	ERVK	chr5RMER19B124547044	ProperStrand	1	chr8	117398589	117398639	protein_coding	Wwox	utr3	ENSMUSG00000004637	ProperStrand	1161	1	-inf
chr15	53297843	53297927	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	chr17	34910711	34910730	pseudogene	Tnxa	.	ENSMUSG00000092200	NonProperStrand	1	1	-inf
chr17	39848099	39848180	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	101195137	101195200	LTR	RMER13A	ERVK	chrXRMER13A101194711	NonProperStrand	1	1	-inf
chr5	143033155	143033240	LTR	RLTR41	ERV1	chr5RLTR41143033070	ProperStrand	3	chr5	143050951	143051026	protein_coding	Mmd2	intron	ENSMUSG00000039533	ProperStrand	23	1	-19.7972
chr9	44389067	44389275	SINE	B3	B2	chr9B344388939	ProperStrand	1	chr13	112578194	112578284	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr11	109011675	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	35278655	35278764	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-3.0963
chr10	53537406	53537492	LINE	Lx3C	L1	chr10Lx3C53533457	ProperStrand	1	chr17	39846453	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	105696388	105696488	LINE	HAL1-3A_ME	L1	chr12HAL1-3A_ME105696359	NonProperStrand	2	chr12	105696216	105696306	SINE	B3	B2	chr12B3105696235	ProperStrand	2	2	-inf
chr17	39847165	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	87003692	87003710	protein_coding	Tmprss11f	intron	ENSMUSG00000048764	ProperStrand	6	1	-3.9545
chr19	23810776	23810866	LINE	L1MA7	L1	chr19L1MA723810393	ProperStrand	1	chr19	23810866	23810966	LTR	MTE2b	MaLR	chr19MTE2b23810894	NonProperStrand	1	1	-inf
chr8	95864299	95864401	LINE	L1M5	L1	chr8L1M595864158	NonProperStrand	8	chr8	95864401	95864491	LINE	L1_Mur2	L1	chr8L1_Mur295864400	ProperStrand	5	4	-inf
chr17	85205907	85205974	LTR	MLT1J-int	MaLR	chr17MLT1J-int85205745	ProperStrand	1	chr17	85205665	85205758	Simple_repeat	(CAGAGA)n	Simple_repeat	chr17(CAGAGA)n85205633	ProperStrand	1	1	-inf
chrX	151169664	151169717	LINE	L1Md_F2	L1	chrXL1Md_F2151169525	ProperStrand	1	chr8	25041510	25041553	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-inf
chr12	33219503	33219566	LINE	L1M2	L1	chr12L1M233219383	NonProperStrand	1	chr12	33222479	33222552	LINE	L1Md_A	L1	chr12L1Md_A33219995	ProperStrand	11	1	-inf
chr15	51933353	51933443	LINE	L1Md_A	L1	chr15L1Md_A51932182	ProperStrand	1	chr15	51933564	51933664	LINE	L1Md_A	L1	chr15L1Md_A51933541	ProperStrand	1	1	-inf
chr10	117826644	117826734	LINE	Lx6	L1	chr10Lx6117825829	ProperStrand	1	chr10	117827175	117827275	Simple_repeat	(CAT)n	Simple_repeat	chr10(CAT)n117827151	ProperStrand	1	1	-inf
chr17	39846521	39846554	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	24680018	24680114	SINE	B3A	B2	chr17B3A24679951	ProperStrand	1	1	-inf
chr16	57925815	57925834	Simple_repeat	(CAAAT)n	Simple_repeat	chr16(CAAAT)n57925794	NonProperStrand	1	chr17	30481459	30481558	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-inf
chr17	24235682	24235723	protein_coding	Pdpk1	intron	ENSMUSG00000024122	ProperStrand	64	chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.3693
chr9	123461854	123461934	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr11	101321504	101321574	protein_coding	Vat1	utr3	ENSMUSG00000034993	NonProperStrand	9	1	-4.5963
chr5	52639179	52639281	DNA	Charlie4a	MER1_type	chr5Charlie4a52639172	NonProperStrand	1	chr17	39846430	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	119075525	119075639	LINE	L1M4	L1	chr1L1M4119074826	ProperStrand	1	chr9	20911439	20911455	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	20	1	-inf
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr19	30103071	30110710	protein_coding	Uhrf2	intron	ENSMUSG00000024817	NonProperStrand	92	1	-5.9647
chr14	55886576	55886666	LINE	L1Md_F2	L1	chr14L1Md_F255886595	NonProperStrand	2	chr14	55886690	55886790	Other	RMER1C	Other	chr14RMER1C55886677	ProperStrand	4	2	-inf
chr2	24912277	24912723	protein_coding-noncoding	Nelf	utr5	ENSMUSG00000006476	NonProperStrand	3	chr2	24912356	24912603	protein_coding	Nelf	intron	ENSMUSG00000006476	NonProperStrand	4	2	-inf
chr15	77292424	77292514	LTR	RMER16-int	ERVK	chr15RMER16-int77290810	NonProperStrand	3	chr15	77292318	77292418	processed_transcript	4930571N24Rik	.	ENSMUSG00000086467	NonProperStrand	43	3	-inf
chr5	24517733	24517822	protein_coding	Prkag2	intron	ENSMUSG00000028944	ProperStrand	69	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.6964
chr17	39846352	39846396	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	175004664	175004782	LTR	ORR1A1	MaLR	chr2ORR1A1175004575	ProperStrand	1	1	-inf
chr17	39843828	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr18	63078738	63078754	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	1	-4.2032
chr5	146261266	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr6	88897389	88897479	SINE	B3	B2	chr6B388897403	NonProperStrand	8	1	-12.0079
chr18	63371451	63371551	protein_coding	Fam38b	intron	ENSMUSG00000041482	NonProperStrand	10	chr18	63343389	63343479	protein_coding	Fam38b	intron	ENSMUSG00000041482	ProperStrand	15	1	-18.4263
chr5	146261070	146261102	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	5602477	5602558	protein_coding	Rnaseh2c	exon	ENSMUSG00000024925	ProperStrand	7	1	-9.4279
chr9	62519994	62520055	DNA	MER81	AcHobo	chr9MER8162519961	NonProperStrand	1	chr9	123461834	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	40804047	40804083	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr4	56873568	56873631	protein_coding	Ctnnal1	intron	ENSMUSG00000038816	ProperStrand	58	1	-7.5071
chr9	123461957	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	44140662	44140863	protein_coding	Dpagt1	exon	ENSMUSG00000032123	ProperStrand	4	1	-6.3300
chr1	93758617	93758717	LTR	RMER15	ERVL	chr1RMER1593758632	NonProperStrand	1	chr1	93758517	93758607	SINE	PB1D10	Alu	chr1PB1D1093758469	NonProperStrand	1	1	-inf
chr11	6473536	6473604	protein_coding	Ccm2	intron	ENSMUSG00000000378	NonProperStrand	28	chr14	100280637	100280699	protein_coding	Klf12	intron	ENSMUSG00000072294	ProperStrand	41	1	-14.3414
chr17	45570266	45570388	protein_coding	Cdc5l	utr5	ENSMUSG00000023932	ProperStrand	300	chr7	29508591	29508623	protein_coding	Fbxo17	intron	ENSMUSG00000030598	NonProperStrand	54	1	-9.0109
chr6	120761830	120761872	protein_coding	Atp6v1e1	intron	ENSMUSG00000019210	NonProperStrand	42	chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-10.1452
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	chr9	118674951	118674988	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.4179
chr13	38426739	38426828	LINE	L1MC1	L1	chr13L1MC138426668	ProperStrand	1	chr13	38272101	38272201	protein_coding	Dsp	intron	ENSMUSG00000054889	NonProperStrand	4	1	-inf
chr12	65061309	65061363	LINE	L1_Rod	L1	chr12L1_Rod65061240	ProperStrand	1	chr9	65201725	65201818	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-inf
chr12	86451314	86451391	DNA	URR1A	MER1_type	chr12URR1A86451248	ProperStrand	3	chr12	86452063	86452139	protein_coding	Dlst	intron	ENSMUSG00000004789	NonProperStrand	77	2	-inf
chr19	46830099	46830160	LTR	MuRRS4-int	ERV1	chr19MuRRS4-int46830033	ProperStrand	1	chr19	46826595	46826646	SINE	PB1D7	Alu	chr19PB1D746826560	NonProperStrand	1	1	-inf
chr12	70234019	70234036	LINE	Lx6	L1	chr12Lx670233665	ProperStrand	1	chr17	39847223	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr6	82042911	82042932	protein_coding	Fam176a	utr3	ENSMUSG00000035104	ProperStrand	1	1	-inf
chr5	36775624	36775714	LTR	ORR1E	MaLR	chr5ORR1E36775603	ProperStrand	1	chr5	36775329	36775429	Other	RMER1B	Other	chr5RMER1B36775007	ProperStrand	1	1	-inf
chr11	6433743	6433810	LTR	IAPEz-int	ERVK	chr11IAPEz-int6433080	NonProperStrand	4	chr17	39847659	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr5	130117538	130117638	Simple_repeat	(GAAA)n	Simple_repeat	chr5(GAAA)n130117511	ProperStrand	3	chr5	130117434	130117524	Simple_repeat	(GGGAGA)n	Simple_repeat	chr5(GGGAGA)n130117376	ProperStrand	3	3	-inf
chr4	81526179	81526269	LINE	L1Md_A	L1	chr4L1Md_A81520593	NonProperStrand	1	chr4	81526332	81526432	LINE	L1Md_A	L1	chr4L1Md_A81526312	NonProperStrand	1	1	-inf
chr17	39846932	39847039	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	123489316	123489335	protein_coding	Morn3	exon	ENSMUSG00000029477	ProperStrand	1	1	-inf
chr9	123462053	123462077	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	25922011	25922084	protein_coding	Zfp622	intron	ENSMUSG00000052253	ProperStrand	13	1	-3.8693
chr7	49787984	49788046	LINE	L1Md_F2	L1	chr7L1Md_F249782375	NonProperStrand	29	chr7	49788775	49788867	Unknown	MurSatRep1	Unknown	chr7MurSatRep149788334	NonProperStrand	2	2	-inf
chr12	111376125	111376178	LTR	ORR1D1	MaLR	chr12ORR1D1111376036	ProperStrand	1	chr3	97168029	97168488	LTR	RMER15	ERVL	chr3RMER1597168377	ProperStrand	5	1	-inf
chr17	39847212	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	118138324	118138340	protein_coding	Ret	intron	ENSMUSG00000030110	NonProperStrand	2	1	-6.5615
chr1	37444118	37444135	protein_coding	Inpp4a	intron	ENSMUSG00000026113	ProperStrand	55	chr13	44869593	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.6593
chr15	79917179	79917221	LTR	RMER15	ERVL	chr15RMER1579916994	NonProperStrand	1	chr2	132829571	132829646	LTR	MTE-int	MaLR	chr2MTE-int132829554	ProperStrand	1	1	-inf
chr10	79894938	79895038	protein_coding	Tcf3	intron	ENSMUSG00000020167	NonProperStrand	6	chr5	100475359	100475450	protein_coding	Enoph1	intron	ENSMUSG00000029326	NonProperStrand	28	1	-18.5473
chr10	96884297	96884332	LINE	L1MB1	L1	chr10L1MB196884166	ProperStrand	1	chr9	123461965	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	52801095	52801185	LINE	L1_Mus1	L1	chrXL1_Mus152801067	NonProperStrand	1	chrX	52800981	52801081	LTR	IAPLTR2_Mm	ERVK	chrXIAPLTR2_Mm52800639	NonProperStrand	1	1	-inf
chr1	151570685	151570785	LINE	L1_Mus2	L1	chr1L1_Mus2151570368	NonProperStrand	1	chr9	80586913	80587003	LINE	Lx9	L1	chr9Lx980586841	ProperStrand	1	1	-inf
chr17	39843728	39843754	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr6	6566271	6566307	lincRNA	RP24-129K7.2	exon	ENSMUSG00000093675	ProperStrand	18	1	-5.2633
chr5	29737373	29737463	LTR	MTB_Mm	MaLR	chr5MTB_Mm29737081	ProperStrand	2	chr5	29737486	29737586	LTR	RLTR22_Mur	ERVK	chr5RLTR22_Mur29737482	ProperStrand	4	2	-inf
chr10	81020127	81020149	SINE	B1_Mus1	Alu	chr10B1_Mus181020090	NonProperStrand	1	chr19	23930731	23930841	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	1	-inf
chr17	93346530	93346598	LINE	L1Md_A	L1	chr17L1Md_A93342272	NonProperStrand	1	chr17	39846499	39846554	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	105054590	105055669	LINE	L1Md_F3	L1	chr9L1Md_F3105050009	NonProperStrand	6	chr9	105055682	105057121	LINE	Lx5	L1	chr9Lx5105056200	NonProperStrand	4	4	-inf
chr17	28249226	28249326	LTR	RMER19A	ERVK	chr17RMER19A28249168	NonProperStrand	1	chr17	28249099	28249189	SINE	B1F1	Alu	chr17B1F128249042	NonProperStrand	1	1	-inf
chr16	42905183	42905249	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr8	60903082	60903126	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-6.2696
chr13	119702922	119702965	LINE	Lx7	L1	chr13Lx7119702791	ProperStrand	1	chr9	123461957	123461996	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	119701659	119701749	protein_coding	Erc1	intron	ENSMUSG00000030172	ProperStrand	98	chr5	45010288	45010388	protein_coding	Ldb2	intron	ENSMUSG00000039706	ProperStrand	20	1	-13.2663
chr11	6528035	6528115	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr5	34601528	34604719	protein_coding	Zfyve28	intron	ENSMUSG00000037224	NonProperStrand	46	1	-13.6504
chr3	108379807	108379905	protein_coding	Taf13	intron	ENSMUSG00000048100	NonProperStrand	2	chr12	80641034	80643809	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-19.3454
chr3	69001604	69001704	LTR	MTA_Mm-int	MaLR	chr3MTA_Mm-int69001524	ProperStrand	1	chr3	69001446	69001536	LTR	MTA_Mm	MaLR	chr3MTA_Mm69001128	ProperStrand	1	1	-inf
chrX	144339223	144339279	LINE	L1_Mus1	L1	chrXL1_Mus1144339103	NonProperStrand	1	chr9	123461988	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr16	37649117	37654182	protein_coding	Ndufb4	exon	ENSMUSG00000022820	ProperStrand	9	1	-16.3501
chr4	88370819	88370909	LTR	MT2B	ERVL	chr4MT2B88370842	ProperStrand	2	chr4	88370910	88371010	SINE	B1_Mur4	Alu	chr4B1_Mur488370855	ProperStrand	2	2	-inf
chr13	112578186	112578269	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr12	17396034	17396107	protein_coding	Nol10	intron	ENSMUSG00000061458	ProperStrand	49	1	-4.5930
chr7	19257900	19258820	LTR	ORR1A2-int	MaLR	chr7ORR1A2-int19256896	NonProperStrand	19	chr11	107452347	107452395	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	1	-11.9398
chr9	47726726	47726816	SINE	B4A	B4	chr9B4A47726738	NonProperStrand	1	chr9	47726530	47726630	SINE	ID4	ID	chr9ID447726547	ProperStrand	1	1	-inf
chr8	107409114	107409190	LINE	L1VL4	L1	chr8L1VL4107409112	ProperStrand	1	chr8	107409028	107409095	LINE	L1_Mus1	L1	chr8L1_Mus1107408193	ProperStrand	1	1	-inf
chr1	106173870	106173923	LINE	L1Md_T	L1	chr1L1Md_T106170353	NonProperStrand	19	chr12	78350878	78350941	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-8.1984
chr8	73196812	73196838	SINE	B1_Mus1	Alu	chr8B1_Mus173196780	NonProperStrand	1	chr8	73200760	73200875	protein_coding	Lsm4	intron	ENSMUSG00000031848	NonProperStrand	8	1	-inf
chr11	77786661	77786716	protein_coding	Sez6	exon	ENSMUSG00000000632	ProperStrand	109	chr7	133097079	133097161	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-4.0397
chr17	66151645	66151661	protein_coding	Ppp4r1	intron	ENSMUSG00000061950	ProperStrand	30	chr17	5066123	5066245	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-9.9471
chr1	8089020	8089039	LINE	Lx9	L1	chr1Lx98088325	NonProperStrand	1	chr9	120130473	120130512	SINE	B4	B4	chr9B4120130322	NonProperStrand	37	1	-inf
chr2	90767249	90767349	SINE	B1_Mur2	Alu	chr2B1_Mur290767253	NonProperStrand	2	chr2	90767172	90767262	SINE	ID_B1	B4	chr2ID_B190767140	NonProperStrand	2	2	-inf
chr15	11986498	11986528	LTR	IAPEz-int	ERVK	chr15IAPEz-int11986107	ProperStrand	22	chr3	79479614	79480616	protein_coding	Rxfp1	intron	ENSMUSG00000034009	ProperStrand	199	1	-11.6500
chr18	40824393	40824483	SINE	B4A	B4	chr18B4A40824336	ProperStrand	1	chr18	40824642	40824742	SINE	B4A	B4	chr18B4A40824545	ProperStrand	1	1	-inf
chr17	39846352	39846472	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	118432692	118432708	LTR	ETnERV2-int	ERVK	chr4ETnERV2-int118432474	ProperStrand	3	1	-4.3017
chr9	118415470	118415560	protein_coding	Golga4	utr5	ENSMUSG00000038708	ProperStrand	8	chr19	45929716	45929816	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	1	-14.3386
chr17	39845311	39845424	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr1	59786787	59786806	SINE	B1_Mus1	Alu	chr1B1_Mus159786788	NonProperStrand	1	1	-inf
chr4	150242156	150244063	LINE	L2	L2	chr4L2150243950	NonProperStrand	21	chrX	152273392	152273418	protein_coding	Gm15155	intron	ENSMUSG00000055109	ProperStrand	121	1	-12.7433
chr3	83931797	83931813	protein_coding	Mnd1	intron	ENSMUSG00000033752	NonProperStrand	5	chr13	97190591	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.2290
chr10	105559482	105559583	LINE	L1MA8	L1	chr10L1MA8105559120	NonProperStrand	1	chr10	105559571	105559661	LINE	L1MA8	L1	chr10L1MA8105559510	NonProperStrand	1	1	-inf
chr17	39848206	39848306	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	33524233	33524323	LTR	MT2A	ERVL	chr5MT2A33524064	NonProperStrand	2	1	-8.4422
chr2	27146367	27146458	protein_coding	Vav2	intron	ENSMUSG00000009621	NonProperStrand	14	chr2	5554309	5554409	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	7	-20.0749
chr11	107339364	107339454	SINE	B2_Mm1a	B2	chr11B2_Mm1a107339364	NonProperStrand	1	chr11	107339277	107339377	SINE	B4A	B4	chr11B4A107339226	ProperStrand	1	1	-inf
chr17	39847183	39847304	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	82883571	82883596	protein_coding	Slfn2	exon	ENSMUSG00000072620	NonProperStrand	8	2	-5.9593
chr11	115622996	115623083	LTR	IAPLTR1_Mm	ERVK	chr11IAPLTR1_Mm115622962	ProperStrand	1	chrX	144883520	144883539	Simple_repeat	(CAAA)n	Simple_repeat	chrX(CAAA)n144883512	ProperStrand	4	1	-inf
chr5	34699364	34699454	SINE	B3	B2	chr5B334699306	NonProperStrand	2	chr17	65684847	65684947	protein_coding	Tmem232	intron	ENSMUSG00000045036	ProperStrand	160	1	-17.4578
chr5	146261153	146261222	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	19961239	19961317	SINE	B3	B2	chr11B319961148	ProperStrand	2	1	-12.4657
chr1	125020871	125020961	LINE	Lx7	L1	chr1Lx7125019945	ProperStrand	1	chr1	125021034	125021134	LINE	Lx7	L1	chr1Lx7125020958	ProperStrand	1	1	-inf
chr17	39848197	39848287	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	65408761	65408861	protein_coding	Fam114a1	intron	ENSMUSG00000029185	ProperStrand	13	1	-4.1930
chr19	28001145	28001188	protein_coding	Rfx3	intron	ENSMUSG00000040929	ProperStrand	67	chr5	114720263	114720337	protein_coding	Foxn4	intron	ENSMUSG00000042002	NonProperStrand	16	3	-inf
chr10	84951050	84951097	protein_coding	Btbd11	intron	ENSMUSG00000020042	ProperStrand	82	chr16	29586076	29586145	protein_coding	Opa1	intron	ENSMUSG00000038084	ProperStrand	37	1	-12.3709
chr4	150337428	150337460	LINE	Lx4A	L1	chr4Lx4A150337307	ProperStrand	3	chrX	73659264	73659285	LTR	MYSERV16_I-int	ERVK	chrXMYSERV16_I-int73659058	NonProperStrand	1	1	-inf
chr8	94246544	94246591	LTR	MLT1F	MaLR	chr8MLT1F94246516	ProperStrand	1	chr4	44210513	44210602	protein_coding	Rnf38	intron	ENSMUSG00000035696	ProperStrand	57	1	-inf
chr11	53290878	53290984	protein_coding	Sowaha	utr3	ENSMUSG00000044352	ProperStrand	16	chrX	105969182	105969223	protein_coding	Brwd3	intron	ENSMUSG00000063663	NonProperStrand	26	1	-16.4237
chr4	41009243	41009261	LINE	Lx9	L1	chr4Lx941009101	NonProperStrand	1	chr19	43889760	43889791	protein_coding	Abcc2	intron	ENSMUSG00000025194	NonProperStrand	51	1	-inf
chr10	30597763	30600629	LINE	L1Md_F	L1	chr10L1Md_F30597594	ProperStrand	1	chr10	30594097	30594137	LINE	L1_Mur3	L1	chr10L1_Mur330592632	NonProperStrand	4	1	-inf
chr16	5246761	5246873	protein_coding	Fam86	intron	ENSMUSG00000022544	NonProperStrand	4	chr9	110281285	110281329	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-13.2304
chr7	35015543	35015629	antisense	Gm12762	.	ENSMUSG00000086526	ProperStrand	1	chr18	84412244	84412320	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-inf
chr11	76581857	76581979	LINE	Lx2	L1	chr11Lx276581771	ProperStrand	2	chr11	76582221	76582246	LTR	MTB	MaLR	chr11MTB76582096	NonProperStrand	2	2	-inf
chr6	124914050	124914117	protein_coding	Cops7a	intron	ENSMUSG00000030127	ProperStrand	17	chr1	11444364	11444435	protein_coding	A830018L16Rik	intron	ENSMUSG00000057715	ProperStrand	31	1	-15.9338
chr17	39847618	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	34143795	34143893	LTR	MT2A	ERVL	chr8MT2A34143812	ProperStrand	1	1	-inf
chr3	150813393	150813414	LINE	L1Md_A	L1	chr3L1Md_A150813365	ProperStrand	1	chr14	21611304	21611411	protein_coding	Camk2g	intron	ENSMUSG00000021820	NonProperStrand	161	1	-inf
chrX	79660319	79660409	LINE	L1VL4	L1	chrXL1VL479658934	ProperStrand	1	chrX	79660454	79660554	LINE	L1_Mus3	L1	chrXL1_Mus379660452	ProperStrand	1	1	-inf
chr8	77794179	77794269	LINE	L1_Mus1	L1	chr8L1_Mus177794065	NonProperStrand	1	chr8	78499900	78500000	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	1	-inf
chr2	124540065	124540165	LINE	Lx8	L1	chr2Lx8124539374	NonProperStrand	1	chr2	124540223	124540313	SINE	PB1D10	Alu	chr2PB1D10124540196	NonProperStrand	1	1	-inf
chr17	39847751	39847789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	26682721	26695419	antisense	1700049J03Rik	.	ENSMUSG00000011052	NonProperStrand	5	1	-3.2379
chr13	44839161	44839270	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	chr7	28351506	28351551	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-8.1295
chr8	87725896	87725935	LINE	L1_Mus3	L1	chr8L1_Mus387724608	NonProperStrand	4	chr8	87713305	87713393	LTR	RMER16-int	ERVK	chr8RMER16-int87711642	NonProperStrand	5	2	-inf
chr17	39848498	39848594	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr14	56487107	56487165	protein_coding	Nynrin	intron	ENSMUSG00000075592	ProperStrand	13	1	-4.4576
chr9	46819654	46819744	LINE	Lx5	L1	chr9Lx546818933	NonProperStrand	1	chr9	46819793	46819893	LINE	Lx8	L1	chr9Lx846819780	ProperStrand	1	1	-inf
chr9	123461798	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr10	39687930	39688012	protein_coding	BC021785	utr3	ENSMUSG00000038528	NonProperStrand	2	1	-8.0983
chr1	39825978	39826068	DNA	MER2	MER2_type	chr1MER239825933	NonProperStrand	1	chr1	39826222	39826322	SINE	B2_Mm1a	B2	chr1B2_Mm1a39826154	NonProperStrand	1	1	-inf
chr13	101859103	101859193	LINE	L1_Mur2	L1	chr13L1_Mur2101857873	ProperStrand	1	chr13	101859254	101859354	LINE	Lx4A	L1	chr13Lx4A101859198	ProperStrand	1	1	-inf
chr17	39846415	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	55338378	55338396	protein_coding	Etfa	intron	ENSMUSG00000032314	ProperStrand	3	1	-4.3017
chr17	46294424	46294514	SINE	ID4_	ID	chr17ID4_46294409	ProperStrand	1	chr17	46294586	46294686	SINE	PB1D10	Alu	chr17PB1D1046294611	ProperStrand	1	1	-inf
chr8	104395347	104395447	LINE	Lx	L1	chr8Lx104395088	ProperStrand	6	chr8	104395456	104395546	LTR	RLTR10	ERVK	chr8RLTR10104395436	NonProperStrand	2	2	-inf
chr15	62053355	62053409	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr14	64770317	64770381	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	1	-4.3670
chr16	91741488	91741584	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	chr12	67661690	67661731	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-9.7757
chr3	16183468	16183485	LINE	Lx5	L1	chr3Lx516183160	ProperStrand	1	chr17	39846580	39846705	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	24350913	24350929	lincRNA	Gm12068	intron	ENSMUSG00000087085	NonProperStrand	4	chr13	97190601	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr3	133511384	133511484	LINE	MusHAL1	L1	chr3MusHAL1133510947	ProperStrand	2	chr3	133511617	133511707	LINE	MusHAL1	L1	chr3MusHAL1133511521	ProperStrand	5	1	-inf
chr17	55687096	55687186	LINE	L1ME2z	L1	chr17L1ME2z55687047	NonProperStrand	1	chr17	55686959	55687061	LTR	MER34A	ERV1	chr17MER34A55686818	ProperStrand	1	1	-inf
chr7	84151718	84151783	LINE	Lx8	L1	chr7Lx884151607	NonProperStrand	1	chr7	84114325	84114372	LTR	RMER15	ERVL	chr7RMER1584114231	ProperStrand	1	1	-inf
chr7	113549425	113549525	LINE	L1_Mur3	L1	chr7L1_Mur3113549373	ProperStrand	1	chr7	113549107	113549197	LINE	Lx8	L1	chr7Lx8113548954	NonProperStrand	1	1	-inf
chr13	9834326	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr19	37397271	37397335	protein_coding	Ide	intron	ENSMUSG00000056999	NonProperStrand	32	1	-10.3753
chr10	39877314	39877398	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n39877164	ProperStrand	1	chr13	44869601	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr13	112578185	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr2	68863982	68864047	protein_coding	Lass6	intron	ENSMUSG00000027035	ProperStrand	71	1	-3.8893
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	172611572	172611682	SINE	B4A	B4	chr2B4A172611555	ProperStrand	1	1	-inf
chr14	61198979	61199069	LINE	L1Md_F2	L1	chr14L1Md_F261198539	ProperStrand	2	chr14	61199068	61199168	LTR	ORR1C1	MaLR	chr14ORR1C161199065	NonProperStrand	2	2	-inf
chr9	46270354	46270454	LINE	L1M4b	L1	chr9L1M4b46270373	NonProperStrand	4	chr9	46270258	46270348	SINE	B3	B2	chr9B346270175	NonProperStrand	4	4	-inf
chr4	89145965	89145985	LTR	LTR16E1	ERVL	chr4LTR16E189145769	ProperStrand	2	chr11	33160846	33161142	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	2	-inf
chr6	145037720	145037820	SINE	B1F1	Alu	chr6B1F1145037704	ProperStrand	1	chr6	145037588	145037678	SINE	ID_B1	B4	chr6ID_B1145037599	ProperStrand	1	1	-inf
chr9	37514449	37514524	LINE	L1VL2	L1	chr9L1VL237514238	NonProperStrand	6	chr9	37514087	37514115	LINE	Lx4B	L1	chr9Lx4B37511549	NonProperStrand	18	1	-19.4534
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	117631567	117631633	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	89	1	-5.3276
chr9	123461820	123461872	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	153342401	153342459	protein_coding	8430427H17Rik	intron	ENSMUSG00000061411	ProperStrand	8	1	-4.8360
chr9	123461931	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	65553161	65554477	protein_coding	Lekr1	intron	ENSMUSG00000074579	ProperStrand	25	2	-4.6937
chr13	100718112	100718212	SINE	B4	B4	chr13B4100718138	NonProperStrand	1	chr13	100718218	100718308	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n100718225	NonProperStrand	1	1	-inf
chr1	161035849	161035912	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr1	89928650	89928703	LINE	L1Md_A	L1	chr1L1Md_A89925217	ProperStrand	5	1	-18.0093
chr17	39847440	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	25575455	25575471	LTR	RLTR6-int	ERV1	chr2RLTR6-int25575016	NonProperStrand	11	2	-3.4077
chr2	3524738	3524777	LINE	L1_Mus3	L1	chr2L1_Mus33523322	NonProperStrand	1	chr4	119111680	119111761	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-inf
chr16	4867421	4867501	protein_coding	4930562C15Rik	utr3	ENSMUSG00000022518	NonProperStrand	3	chr2	122066167	122066240	protein_coding	Sord	intron	ENSMUSG00000027227	NonProperStrand	25	1	-19.8841
chr19	8497906	8497996	LINE	L1_Mur1	L1	chr19L1_Mur18497777	NonProperStrand	1	chr19	8497505	8497605	LTR	RLTR13D3	ERVK	chr19RLTR13D38497363	ProperStrand	1	1	-inf
chr17	39847596	39847624	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	103171839	103171977	LTR	ORR1A4	MaLR	chr3ORR1A4103171905	NonProperStrand	3	1	-4.3512
chr10	81528887	81528940	LINE	L1_Mur2	L1	chr10L1_Mur281528830	NonProperStrand	6	chr17	39847160	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.9545
chr7	143289585	143289650	SINE	B4A	B4	chr7B4A143289552	ProperStrand	3	chr17	6430187	6431914	protein_coding	Dynlt1b	intron	ENSMUSG00000091454	ProperStrand	3	1	-20.2168
chr4	133965818	133965896	protein_coding	Pafah2	intron	ENSMUSG00000037366	NonProperStrand	39	chr12	79669356	79669415	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-7.7749
chr12	81745980	81746070	protein_coding	Slc39a9	intron	ENSMUSG00000048833	ProperStrand	4	chr12	82613835	82613935	protein_coding	Synj2bp	intron	ENSMUSG00000090935	ProperStrand	2	1	-20.9262
chr17	39846900	39846990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	29947079	29947179	protein_coding-noncoding	Zdhhc12	utr3	ENSMUSG00000015335	NonProperStrand	3	1	-4.3017
chr17	39848479	39848588	LINE	L1Md_T	L1	chr17L1Md_T39848464	NonProperStrand	9	chr17	39848115	39848475	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	14	7	-20.5683
chr11	100479252	100479291	protein_coding	Dnajc7	intron	ENSMUSG00000014195	ProperStrand	28	chr11	100481476	100481750	protein_coding	Nkiras2	intron	ENSMUSG00000017837	NonProperStrand	16	1	-16.2851
chr2	69491762	69491797	protein_coding	Bbs5	intron	ENSMUSG00000063145	NonProperStrand	2	chr2	69516516	69516561	protein_coding	Kbtbd10	intron	ENSMUSG00000075307	NonProperStrand	5	1	-inf
chr12	4556470	4556563	LINE	Lx8	L1	chr12Lx84556256	NonProperStrand	2	chr16	13369105	13369130	protein_coding	Mkl2	intron	ENSMUSG00000009569	NonProperStrand	14	1	-19.5799
chr13	101742690	101742728	LTR	ORR1D1	MaLR	chr13ORR1D1101742613	NonProperStrand	1	chr13	101743004	101743067	Simple_repeat	(TCTA)n	Simple_repeat	chr13(TCTA)n101742780	NonProperStrand	1	1	-inf
chr17	39845876	39845941	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr6	49259765	49259840	SINE	B3A	B2	chr6B3A49259734	ProperStrand	2	1	-9.0607
chr9	21847195	21847249	protein_coding	Elavl3	intron	ENSMUSG00000003410	ProperStrand	162	chr5	150436754	150436818	protein_coding	Hsph1	intron	ENSMUSG00000029657	NonProperStrand	3	1	-16.4257
chr17	39847152	39847239	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	19961399	19961416	protein_coding	Ppp1r13l	intron	ENSMUSG00000040734	ProperStrand	1	1	-inf
chr7	84633081	84633153	LINE	Lx	L1	chr7Lx84632394	ProperStrand	1	chr9	123461957	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	34909844	34909953	SINE	B2_Mm1t	B2	chr5B2_Mm1t34909831	NonProperStrand	1	chr5	34909779	34909799	SINE	B2_Mm2	B2	chr5B2_Mm234909676	NonProperStrand	1	1	-inf
chr12	80224803	80224903	LTR	MERVL-int	ERVL	chr12MERVL-int80224802	NonProperStrand	1	chr12	80224436	80224526	LTR	MT2_Mm	ERVL	chr12MT2_Mm80224176	NonProperStrand	1	1	-inf
chr17	3437301	3437317	protein_coding	Tiam2	exon	ENSMUSG00000023800	ProperStrand	4	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-17.8110
chr7	132983903	132983956	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	ProperStrand	47	chr6	94164995	94165056	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	2	-10.9269
chr5	136650654	136650744	LTR	ORR1D1	MaLR	chr5ORR1D1136650652	NonProperStrand	1	chr5	136650852	136650952	LTR	ORR1D1	MaLR	chr5ORR1D1136650817	NonProperStrand	1	1	-inf
chr11	97162298	97162395	SINE	B1_Mus2	Alu	chr11B1_Mus297162170	NonProperStrand	12	chr11	97161894	97161911	Simple_repeat	(TTG)n	Simple_repeat	chr11(TTG)n97161888	NonProperStrand	1	1	-inf
chr15	51829150	51829210	LTR	RMER6B	ERVK	chr15RMER6B51829165	ProperStrand	1	chr4	14800132	14800210	protein_coding	Tmem55a	intron	ENSMUSG00000028221	NonProperStrand	17	1	-inf
chr13	9834316	9834409	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr13	19463983	19463999	protein_coding	Stard3nl	intron	ENSMUSG00000003062	NonProperStrand	4	1	-14.7868
chrX	155305618	155305637	LINE	L1MA9	L1	chrXL1MA9155305556	NonProperStrand	1	chr17	39846759	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	112333728	112333818	LINE	L1_Mus2	L1	chr3L1_Mus2112331362	ProperStrand	1	chr14	33968115	33968215	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr17	39847215	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	81626637	81626661	SINE	B2_Mm1t	B2	chr10B2_Mm1t81626639	ProperStrand	1	1	-inf
chr13	51130436	51130499	LTR	IAPEz-int	ERVK	chr13IAPEz-int51129338	ProperStrand	4	chr9	98957096	98957112	protein_coding	Pik3cb	intron	ENSMUSG00000032462	ProperStrand	11	1	-inf
chr19	44938444	44938534	LINE	L1Md_F3	L1	chr19L1Md_F344938316	NonProperStrand	3	chr19	44938215	44938314	SINE	B1_Mm	Alu	chr19B1_Mm44938169	NonProperStrand	3	3	-inf
chr2	27383702	27383802	protein_coding-noncoding	Wdr5	utr5	ENSMUSG00000026917	NonProperStrand	1	chr2	27383925	27384015	protein_coding	Wdr5	intron	ENSMUSG00000026917	NonProperStrand	37	1	-inf
chr17	39847844	39847885	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	4528754	4528831	antisense	Gm11961	.	ENSMUSG00000056288	ProperStrand	2	1	-5.4040
chr10	85014159	85014262	protein_coding	Btbd11	intron	ENSMUSG00000020042	ProperStrand	82	chr2	59696877	59696915	protein_coding	Wdsub1	intron	ENSMUSG00000026988	NonProperStrand	22	1	-13.4303
chr17	39847513	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	120127787	120127823	LTR	MLT1E1A	MaLR	chr9MLT1E1A120127793	NonProperStrand	2	1	-5.4040
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr2	91767767	91767843	protein_coding	Chrm4	exon	ENSMUSG00000040495	ProperStrand	12	1	-16.3711
chr11	98465167	98465267	LINE	Lx8	L1	chr11Lx898465167	NonProperStrand	1	chr11	98465411	98465501	SINE	B3	B2	chr11B398465335	NonProperStrand	1	1	-inf
chr5	138164751	138164827	SINE	B4	B4	chr5B4138164692	NonProperStrand	1	chr9	123461891	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr12	80441461	80441488	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-6.2107
chr17	4082215	4082244	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr14	19278155	19278194	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-7.1903
chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr13	97190543	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	11	-11.7779
chr17	39845294	39845384	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr13	66679502	66679602	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int66678628	NonProperStrand	4	4	-inf
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	34849721	34849809	protein_coding	Cga	intron	ENSMUSG00000028298	NonProperStrand	13	1	-4.1930
chr12	19926010	19926110	LTR	MTD-int	MaLR	chr12MTD-int19925778	ProperStrand	1	chr17	39847636	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	4082493	4082570	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	102829371	102829438	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-5.5488
chr6	49236479	49236595	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-7.5948
chr12	99312660	99312760	LTR	ERVL-B4-int	ERVL	chr12ERVL-B4-int99311875	NonProperStrand	2	chr12	99312767	99312857	LTR	ERVL-B4-int	ERVL	chr12ERVL-B4-int99312689	NonProperStrand	2	2	-inf
chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	41307476	41307493	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n41307467	NonProperStrand	1	1	-inf
chr10	53524819	53524919	LINE	L1Md_F2	L1	chr10L1Md_F253524828	ProperStrand	1	chr10	53524682	53524772	LINE	L1_Mus3	L1	chr10L1_Mus353523629	ProperStrand	1	1	-inf
chr5	64810434	64810457	LTR	ORR1A2	MaLR	chr5ORR1A264810433	NonProperStrand	1	chr5	64810456	64810591	SINE	B2_Mm1t	B2	chr5B2_Mm1t64810494	ProperStrand	2	1	-inf
chr4	13886852	13886919	lincRNA	Gm11823	intron	ENSMUSG00000086927	NonProperStrand	7	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.8922
chr10	4291156	4291229	LTR	MTEa	MaLR	chr10MTEa4291060	NonProperStrand	1	chr12	3454626	3454709	protein_coding	Asxl2	intron	ENSMUSG00000037486	ProperStrand	73	1	-inf
chr17	56392511	56392614	LINE	L1MEg	L1	chr17L1MEg56392517	ProperStrand	1	chr17	56392205	56392229	SINE	B2_Mm2	B2	chr17B2_Mm256392170	ProperStrand	1	1	-inf
chr18	77774054	77775787	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr7	111076175	111076206	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-8.9726
chr17	39847160	39847212	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	72217853	72217911	protein_coding	Smtnl2	intron	ENSMUSG00000045667	NonProperStrand	6	1	-3.9545
chr12	101918203	101918293	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	chr1	134832826	134832926	protein_coding	Lrrn2	intron	ENSMUSG00000026443	NonProperStrand	31	1	-12.3511
chr9	19657908	19658008	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chr5	74901498	74901588	protein_coding	Scfd2	intron	ENSMUSG00000062110	ProperStrand	53	1	-13.9657
chr8	102865414	102865655	LTR	MLT1A1-int	MaLR	chr8MLT1A1-int102865373	ProperStrand	15	chr5	115560742	115561236	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	165	14	-22.6840
chr5	110381888	110381931	LTR	ORR1D-int	MaLR	chr5ORR1D-int110381801	ProperStrand	2	chr5	110382541	110382645	LTR	RMER17A	ERVK	chr5RMER17A110382484	NonProperStrand	2	2	-inf
chr8	28851666	28851756	LINE	L1ME3A	L1	chr8L1ME3A28851556	NonProperStrand	1	chr8	28851358	28851458	LTR	MTEa	MaLR	chr8MTEa28851206	NonProperStrand	1	1	-inf
chr15	38057239	38057306	LINE	Lx2B	L1	chr15Lx2B38056699	ProperStrand	7	chr17	39847180	39847221	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr7	92761007	92761036	LINE	L1VL4	L1	chr7L1VL492760821	NonProperStrand	2	chr7	92746173	92746212	LINE	Lx5	L1	chr7Lx592745769	ProperStrand	1	1	-inf
chr10	19554230	19554330	LTR	ORR1E	MaLR	chr10ORR1E19554203	NonProperStrand	1	chr10	19554343	19554433	SINE	PB1D9	Alu	chr10PB1D919554315	ProperStrand	1	1	-inf
chr10	23785377	23785448	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr19	5853119	5853140	protein_coding	Frmd8	intron	ENSMUSG00000024816	NonProperStrand	1	1	-inf
chr2	25611389	25611479	LTR	MTB-int	MaLR	chr2MTB-int25610485	NonProperStrand	2	chr2	25611581	25611681	LTR	MTB	MaLR	chr2MTB25611558	NonProperStrand	1	1	-inf
chr7	102332031	102332076	LINE	L1Md_F2	L1	chr7L1Md_F2102329915	NonProperStrand	1	chr7	102337283	102337356	LINE	L1Md_T	L1	chr7L1Md_T102336001	ProperStrand	6	1	-inf
chr5	146261269	146261318	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr12	87167944	87168036	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	132	1	-6.3137
chr17	39847296	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	147309057	147309166	protein_coding	Plod1	intron	ENSMUSG00000019055	NonProperStrand	2	1	-6.5615
chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	18092845	18092943	SINE	B1_Mus2	Alu	chr10B1_Mus218092868	NonProperStrand	1	1	-inf
chr17	56374416	56374447	SINE	RSINE1	B4	chr17RSINE156374274	NonProperStrand	2	chr3	153656893	153656952	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	1	-16.3068
chr5	118639961	118640051	SINE	B1F	Alu	chr5B1F118639942	NonProperStrand	6	chr5	118640047	118640147	SINE	ID4_	ID	chr5ID4_118640069	NonProperStrand	5	5	-inf
chr17	39845172	39845228	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	121674141	121674181	LTR	RMER16	ERVK	chr2RMER16121674065	NonProperStrand	1	1	-inf
chr5	115920499	115920534	protein_coding	Pla2g1b	intron	ENSMUSG00000029522	ProperStrand	17	chr17	5555682	5555763	protein_coding	Zdhhc14	intron	ENSMUSG00000034265	ProperStrand	114	1	-13.2958
chr4	139105033	139105859	protein_coding	Iffo2	intron	ENSMUSG00000041025	NonProperStrand	59	chr19	8946462	8946517	protein_coding	Ubxn1	intron	ENSMUSG00000071655	ProperStrand	13	1	-15.1911
chr2	50398414	50398432	LINE	Lx	L1	chr2Lx50397259	ProperStrand	5	chr10	89755161	89755286	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-15.6155
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr6	29876569	29876655	protein_coding	Fam40b	exon	ENSMUSG00000039629	ProperStrand	8	1	-11.9788
chr2	105754132	105754255	protein_coding	Immp1l	intron	ENSMUSG00000042670	NonProperStrand	30	chr13	97190606	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.4878
chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	chr2	90395156	90395182	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-10.3458
chr3	89021176	89021239	protein_coding-noncoding	Thbs3	utr5	ENSMUSG00000028047	ProperStrand	1	chr4	53860708	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-inf
chr17	39846428	39846885	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	88775320	88880462	protein_coding	Ash1l	intron	ENSMUSG00000028053	ProperStrand	44	6	-3.5229
chr13	97131240	97131288	LINE	L1Md_A	L1	chr13L1Md_A97127548	NonProperStrand	10	chr17	39843485	39843579	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-5.9887
chr4	124767217	124785321	protein_coding-noncoding	Meaf6	utr5	ENSMUSG00000028863	ProperStrand	2	chr4	124766955	124785285	protein_coding	Meaf6	intron	ENSMUSG00000028863	ProperStrand	23	2	-inf
chr14	18727699	18727736	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr9	118415565	118415649	protein_coding	Golga4	utr5	ENSMUSG00000038708	ProperStrand	8	1	-14.0975
chrX	74337801	74337991	SINE	B4	B4	chrXB474337921	ProperStrand	3	chrX	74337698	74337788	SINE	ID_B1	B4	chrXID_B174337635	NonProperStrand	3	3	-inf
chr12	110409876	110409976	LINE	L1_Mus1	L1	chr12L1_Mus1110409730	NonProperStrand	2	chr12	110410024	110410114	Simple_repeat	(GAAA)n	Simple_repeat	chr12(GAAA)n110410004	NonProperStrand	2	2	-inf
chr4	15335109	15335167	LINE	L1_Mur1	L1	chr4L1_Mur115331254	ProperStrand	1	chr4	15340483	15340577	LINE	L1_Mus1	L1	chr4L1_Mus115340061	ProperStrand	1	1	-inf
chr15	102246088	102246129	protein_coding	Sp1	intron	ENSMUSG00000001280	NonProperStrand	50	chrX	160588991	160589007	protein_coding	Ace2	intron	ENSMUSG00000015405	NonProperStrand	17	1	-14.9561
chr17	39847736	39847800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	47090049	47090083	protein_coding	Ina	exon	ENSMUSG00000034336	NonProperStrand	2	1	-5.4040
chr12	77410158	77410248	protein_coding	Mthfd1	intron	ENSMUSG00000021048	NonProperStrand	5	chr4	14678309	14678409	protein_coding	Lrrc69	intron	ENSMUSG00000023151	ProperStrand	7	1	-21.1751
chr15	68180052	68180150	lincRNA	Mir30d	exon	ENSMUSG00000093387	ProperStrand	16	chr9	123461905	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr3	97273368	97273436	LINE	L1_Rod	L1	chr3L1_Rod97272952	ProperStrand	2	chr17	39847887	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr11	12037338	12037428	LINE	L1Md_A	L1	chr11L1Md_A12037357	ProperStrand	6	chr11	12037214	12037314	LINE	L1Md_F2	L1	chr11L1Md_F212037044	ProperStrand	6	6	-inf
chr7	30608092	30608173	protein_coding	Zfp790	utr5	ENSMUSG00000011427	NonProperStrand	6	chr12	82410793	82410847	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	1	-15.4798
chr17	45568343	45568445	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr18	89017252	89017268	protein_coding	Socs6	intron	ENSMUSG00000056153	NonProperStrand	12	1	-12.0794
chr12	111812492	111812556	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	NonProperStrand	26	chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-11.4122
chr15	85463655	85463713	LINE	L1MB4	L1	chr15L1MB485462903	NonProperStrand	2	chr9	123461802	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	31082611	31082677	SINE	B1_Mus2	Alu	chr2B1_Mus231082571	NonProperStrand	7	chr11	98250242	98250318	protein_coding	Pgap3	utr3	ENSMUSG00000038208	NonProperStrand	11	1	-21.2235
chr16	19075677	19075713	LINE	L1Md_T	L1	chr16L1Md_T19075212	NonProperStrand	3	chr3	76599266	76599327	LTR	IAP-d-int	ERVK	chr3IAP-d-int76599002	ProperStrand	1	1	-inf
chr17	39847762	39847797	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	107614603	107614677	SINE	B3A	B2	chr3B3A107614487	ProperStrand	1	1	-inf
chr15	99133667	99133715	protein_coding	Prpf40b	utr5	ENSMUSG00000023007	ProperStrand	26	chr9	72671237	72671275	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-10.3402
chr16	11145537	11145627	protein_coding-noncoding	Zc3h7a	utr3	ENSMUSG00000037965	ProperStrand	6	chr16	11145413	11145513	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	23	2	-inf
chr15	51883474	51883528	LINE	Lx	L1	chr15Lx51882808	NonProperStrand	2	chr17	85183519	85183623	protein_coding	Lrpprc	intron	ENSMUSG00000024120	NonProperStrand	54	1	-19.4448
chr6	17659975	17660015	protein_coding	St7	intron	ENSMUSG00000029534	ProperStrand	40	chr17	35660104	35660278	protein_coding	Cchcr1	intron	ENSMUSG00000040312	NonProperStrand	23	1	-14.7897
chr14	72644700	72644738	Simple_repeat	(TCTCTG)n	Simple_repeat	chr14(TCTCTG)n72644676	NonProperStrand	1	chr4	133712093	133712168	protein_coding	Ccdc21	exon	ENSMUSG00000037443	ProperStrand	102	1	-inf
chr2	84686072	84686153	protein_coding	Slc43a1	intron	ENSMUSG00000027075	NonProperStrand	12	chr17	8379764	8379827	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	ProperStrand	10	1	-18.8836
chr11	116023521	116023743	protein_coding	Fbf1	intron	ENSMUSG00000020776	ProperStrand	74	chr2	62595424	62595446	protein_coding	Kcnh7	intron	ENSMUSG00000059742	ProperStrand	11	1	-15.0746
chr11	62603641	62604697	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr4	99967650	99967679	protein_coding	Ror1	intron	ENSMUSG00000035305	ProperStrand	128	1	-11.3190
chr3	144517630	144517733	LINE	L1_Mus1	L1	chr3L1_Mus1144516441	ProperStrand	7	mmu-miR-3968	3	21	miRNA	mmu-miR-3968	.	mmu-miR-3968	ProperStrand	12	1	-20.2970
chr9	17987812	17987836	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr11	69667448	69667522	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-8.1401
chrX	123103874	123103900	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	2	chr17	39846815	39846879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr10	21480512	21480530	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	11	chr5	114852125	114852153	protein_coding	Ube3b	intron	ENSMUSG00000029577	NonProperStrand	10	1	-19.4454
chr6	131020925	131021015	LTR	ORR1A4-int	MaLR	chr6ORR1A4-int131019133	NonProperStrand	1	chr6	131021241	131021341	LTR	ORR1A4	MaLR	chr6ORR1A4131021164	NonProperStrand	1	1	-inf
chr17	39847980	39848058	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	30446853	30446895	LTR	MTE2a	MaLR	chr2MTE2a30446835	NonProperStrand	1	1	-inf
chr2	36677580	36677680	LTR	ETnERV2-int	ERVK	chr2ETnERV2-int36675700	ProperStrand	1	chr5	3764090	3764180	protein_coding	Ankib1	intron	ENSMUSG00000040351	ProperStrand	49	1	-inf
chr8	89042112	89042202	protein_coding	Abcc12	intron	ENSMUSG00000036872	ProperStrand	128	chr2	71883487	71883587	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-8.8177
chr3	22121795	22121830	LTR	RMER13B	ERVK	chr3RMER13B22121151	NonProperStrand	1	chr3	22124277	22124322	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n22124279	ProperStrand	1	1	-inf
chr6	50564513	50564550	LTR	IAPEz-int	ERVK	chr6IAPEz-int50563355	NonProperStrand	3	chr5	73511807	73511930	protein_coding	Fryl	intron	ENSMUSG00000070733	NonProperStrand	82	1	-17.8401
chr6	94127253	94127394	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr7	99441184	99441200	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	2	-3.6569
chr11	95860637	95860692	protein_coding	Igf2bp1	intron	ENSMUSG00000013415	NonProperStrand	13	chr13	49715397	49715501	protein_coding	Ogn	intron	ENSMUSG00000021390	ProperStrand	39	3	-inf
chr17	39847736	39847841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	19909205	19909223	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n19909009	NonProperStrand	1	1	-inf
chr15	84192377	84195812	LTR	MLT1A1	MaLR	chr15MLT1A184195581	NonProperStrand	4	chr17	39843932	39843998	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	1	-9.5462
chr11	29593960	29594031	protein_coding	Rtn4	intron	ENSMUSG00000020458	ProperStrand	8	chr7	109520118	109520199	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-13.9828
chr5	140039149	140039265	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.2500
chr13	44869609	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr14	122324256	122324330	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-3.2473
chr5	4078532	4078577	protein_coding	Akap9	intron	ENSMUSG00000040407	NonProperStrand	22	chr16	18428468	18428503	protein_coding	Txnrd2	intron	ENSMUSG00000075704	ProperStrand	11	1	-17.6175
chr17	39846592	39846660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	66790380	66790398	protein_coding	Ptk2b	intron	ENSMUSG00000059456	NonProperStrand	5	1	-3.1907
chr3	41580349	41580439	LTR	MTA_Mm	MaLR	chr3MTA_Mm41580098	ProperStrand	8	chr3	41557437	41557537	protein_coding	D3Ertd751e	intron	ENSMUSG00000025766	ProperStrand	46	3	-inf
chrX	65908123	65908140	LINE	Lx5	L1	chrXLx565907983	ProperStrand	1	chr17	39846411	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	23756791	23756808	LINE	Lx2	L1	chr17Lx223756460	NonProperStrand	1	chr17	39846580	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	68252091	68252146	protein_coding	Pik3r5	intron	ENSMUSG00000020901	NonProperStrand	75	chr1	162541030	162541084	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	1	-9.4969
chr11	109011745	109011773	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	166409666	166409684	LINE	L1ME1	L1	chr1L1ME1166409570	NonProperStrand	1	1	-inf
chr17	39847438	39847475	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	134081135	134081358	SINE	B3	B2	chr4B3134081029	NonProperStrand	1	1	-inf
chr11	22854915	22855021	protein_coding	Commd1	intron	ENSMUSG00000051355	ProperStrand	127	chr1	38051696	38051744	protein_coding	Txndc9	intron	ENSMUSG00000058407	ProperStrand	11	1	-13.9877
chr13	77810389	77810446	LTR	IAPEz-int	ERVK	chr13IAPEz-int77810299	NonProperStrand	1	chr13	77810067	77810162	LTR	IAPLTR1a_Mm	ERVK	chr13IAPLTR1a_Mm77809963	NonProperStrand	1	1	-inf
chr17	39848588	39848616	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	25090519	25090537	protein_coding	Gm757	utr3	ENSMUSG00000089953	NonProperStrand	2	2	-inf
chr10	81529812	81529846	LINE	L1_Mur2	L1	chr10L1_Mur281528830	NonProperStrand	6	chr10	61324573	61324684	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-13.0092
chr8	106373524	106373540	LINE	L1MB1	L1	chr8L1MB1106373317	ProperStrand	1	chr17	39847981	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	17987812	17987838	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr7	24885546	24888384	protein_coding	Zfp180	intron	ENSMUSG00000057101	ProperStrand	154	1	-9.2516
chr12	59040462	59040523	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr11	88628242	88628307	SINE	B4	B4	chr11B488628149	NonProperStrand	2	1	-17.5474
chr8	94563439	94563529	LINE	L1ME2	L1	chr8L1ME294563168	ProperStrand	1	chr8	94563613	94563713	SINE	B3	B2	chr8B394563534	ProperStrand	1	1	-inf
chr17	14946607	14946625	LTR	ORR1E-int	MaLR	chr17ORR1E-int14945863	NonProperStrand	4	chr4	151844033	151844123	protein_coding	Kcnab2	intron	ENSMUSG00000028931	ProperStrand	216	1	-15.1448
chr2	71888141	71888161	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	chr15	86194891	86194943	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-7.1184
chr11	109011656	109011716	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	73376627	73376715	protein_coding	Lrrk1	intron	ENSMUSG00000015133	NonProperStrand	32	1	-7.3504
chr2	129126312	129126402	protein_coding	Il1a	utr3	ENSMUSG00000027399	ProperStrand	3	chr8	27217152	27217252	protein_coding	Hook3	intron	ENSMUSG00000037234	ProperStrand	117	2	-19.3401
chr6	89502185	89502243	protein_coding	Chchd6	intron	ENSMUSG00000030086	ProperStrand	188	chr4	126900822	126900890	protein_coding	Dlgap3	intron	ENSMUSG00000042388	NonProperStrand	48	1	-10.1810
chr2	142732971	142733061	LTR	MLT1H	MaLR	chr2MLT1H142732776	NonProperStrand	5	chr2	143005547	143005647	LTR	MTC	MaLR	chr2MTC143005220	NonProperStrand	1	1	-inf
chr7	24567087	24567122	LTR	ORR1A0-int	MaLR	chr7ORR1A0-int24566507	NonProperStrand	7	chr7	24566266	24566482	LTR	ORR1A0	MaLR	chr7ORR1A024566178	NonProperStrand	2	1	-21.4874
chr17	50476549	50476649	DNA	MER20	MER1_type	chr17MER2050476467	NonProperStrand	1	chr17	50476175	50476265	LTR	MTEa	MaLR	chr17MTEa50476077	ProperStrand	1	1	-inf
chr12	19406331	19406421	LTR	ORR1D-int	MaLR	chr12ORR1D-int19406297	ProperStrand	1	chr12	18533854	18533954	protein_coding	5730507C01Rik	intron	ENSMUSG00000073197	ProperStrand	6	1	-inf
chr16	98063119	98063254	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	chr12	67665438	67665568	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	2	-18.2316
chr17	23815191	23815240	SINE	B3A	B2	chr17B3A23815066	NonProperStrand	1	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	86441698	86441725	LTR	MT2_Mm	ERVL	chr6MT2_Mm86441614	NonProperStrand	1	chr4	119282802	119285135	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	1	-inf
chr2	177478966	177479066	LINE	L1VL1	L1	chr2L1VL1177476150	ProperStrand	8	chr13	58247517	58247607	LTR	MMERVK10C-int	ERVK	chr13MMERVK10C-int58245178	ProperStrand	6	2	-inf
chr4	130568139	130568241	LTR	RMER19B	ERVK	chr4RMER19B130567862	NonProperStrand	1	chr4	130563978	130564021	lincRNA	A930031H19Rik	intron	ENSMUSG00000086262	ProperStrand	41	1	-inf
chr2	5379266	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr4	24616388	24616455	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-3.5151
chr5	121205091	121205144	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr7	25074907	25074931	protein_coding	Zfp61	intron	ENSMUSG00000050605	ProperStrand	4	1	-15.5730
chr17	15498120	15498243	LINE	Lx9	L1	chr17Lx915498155	ProperStrand	5	chr11	115123814	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	1	-19.6066
chr17	39847636	39847700	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	102480630	102480666	SINE	RSINE1	B4	chr15RSINE1102480622	ProperStrand	1	1	-inf
chr7	131028632	131028722	LINE	L1_Mus3	L1	chr7L1_Mus3131028616	ProperStrand	1	chr7	131028881	131028981	LINE	Lx8	L1	chr7Lx8131028887	ProperStrand	1	1	-inf
chr5	140341263	140341380	LTR	ORR1E	MaLR	chr5ORR1E140341033	ProperStrand	5	chr5	140341363	140341459	LTR	RMER17D	ERVK	chr5RMER17D140341378	ProperStrand	3	3	-inf
chr9	106429984	106430367	LINE	Lx8	L1	chr9Lx8106430222	NonProperStrand	4	chr4	147528164	147528264	protein_coding	Fbxo44	intron	ENSMUSG00000029001	NonProperStrand	4	1	-inf
chr7	46621640	46626264	LINE	Lx6	L1	chr7Lx646625579	NonProperStrand	1	chr7	46632667	46633766	LINE	Lx6	L1	chr7Lx646631316	NonProperStrand	1	1	-inf
chr17	39846900	39846958	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	103015433	103015501	Simple_repeat	(TTG)n	Simple_repeat	chr11(TTG)n103015447	NonProperStrand	1	1	-inf
chr17	39847440	39848032	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	15938758	15938870	LTR	LTRIS_Mus	ERV1	chr7LTRIS_Mus15938504	ProperStrand	14	3	-4.4446
chr11	23859494	23859584	LTR	ORR1A4-int	MaLR	chr11ORR1A4-int23859448	ProperStrand	2	chr11	23859361	23859461	LTR	ORR1E	MaLR	chr11ORR1E23859364	NonProperStrand	2	2	-inf
chr18	36376777	36376867	DNA	Tigger7	MER2_type	chr18Tigger736376737	ProperStrand	2	chr18	36376881	36376981	LINE	Lx7	L1	chr18Lx736376849	NonProperStrand	2	2	-inf
chr17	39843658	39843710	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chrX	7772564	7773500	protein_coding	Porcn	intron	ENSMUSG00000031169	NonProperStrand	13	1	-5.4538
chr17	39846470	39846503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr7	126796728	126797367	protein_coding	Acsm1	intron	ENSMUSG00000033533	ProperStrand	43	1	-13.7874
chr12	77954017	77954107	protein_coding	Fntb	intron	ENSMUSG00000033373	NonProperStrand	4	chr12	77651957	77652057	protein_coding	Plekhg3	intron	ENSMUSG00000052609	ProperStrand	3	1	-inf
chr12	40410727	40410827	DNA	MER45C	Tip100	chr12MER45C40410635	NonProperStrand	6	chr12	41173269	41173359	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	2	-inf
chr3	87617742	87617787	protein_coding	Insrr	exon	ENSMUSG00000005640	ProperStrand	2	chr3	87737643	87737698	protein_coding	Isg20l2	intron	ENSMUSG00000048039	ProperStrand	10	2	-inf
chr17	39846952	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	93560982	93561005	LTR	MMETn-int	ERVK	chr3MMETn-int93559699	NonProperStrand	2	1	-5.3533
chr17	39846822	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	127697373	127697464	SINE	B2_Mm1a	B2	chr10B2_Mm1a127697385	NonProperStrand	1	1	-inf
chr15	84204510	84204604	LINE	L1MD1	L1	chr15L1MD184204522	NonProperStrand	3	chr17	39846776	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr1	14635178	14635268	LTR	BGLII_B	ERVK	chr1BGLII_B14635071	NonProperStrand	1	chr1	14635527	14635627	LTR	BGLII_B	ERVK	chr1BGLII_B14635460	NonProperStrand	1	1	-inf
chr17	28399489	28399537	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	chr7	105863079	105863117	protein_coding	Prkrir	intron	ENSMUSG00000030753	ProperStrand	5	1	-16.0957
chr12	102567375	102567475	LINE	L1_Mus3	L1	chr12L1_Mus3102564391	ProperStrand	4	chr17	39846415	39846472	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr11	35618253	35618353	LINE	L1MEg	L1	chr11L1MEg35618174	ProperStrand	1	chr11	35618532	35618622	SINE	B2_Mm2	B2	chr11B2_Mm235618556	NonProperStrand	1	1	-inf
chr5	146261265	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr7	144444145	144444246	protein_coding	Ebf3	intron	ENSMUSG00000010476	ProperStrand	116	1	-6.5682
chr15	73183988	73184105	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr9	86774228	86774245	protein_coding	Snap91	intron	ENSMUSG00000033419	NonProperStrand	11	1	-10.8819
chr17	39847903	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	76533634	76533655	LTR	RLTR16	ERVK	chr18RLTR1676533345	ProperStrand	1	1	-inf
chr10	3991054	3991136	LINE	L1Md_F3	L1	chr10L1Md_F33990943	NonProperStrand	31	chr10	3999107	3999177	LINE	L1_Mur2	L1	chr10L1_Mur23997246	NonProperStrand	6	2	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	39536208	39536282	SINE	RSINE1	B4	chr1RSINE139536204	NonProperStrand	1	1	-inf
chr14	87530446	87530487	protein_coding	Diap3	intron	ENSMUSG00000022021	NonProperStrand	38	chr14	20385164	20385222	protein_coding	Gm2237	intron	ENSMUSG00000079354	ProperStrand	13	1	-16.0903
chr9	63750651	63750751	LTR	MYSERV16_I-int	ERVK	chr9MYSERV16_I-int63750434	NonProperStrand	1	chr9	63750827	63750917	LTR	RLTR16	ERVK	chr9RLTR1663750746	NonProperStrand	4	1	-inf
chr16	9201756	9201850	LINE	L1_Mus3	L1	chr16L1_Mus39201572	ProperStrand	1	chr17	39846737	39846768	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	16770379	16770469	LINE	L1_Mur3	L1	chr1L1_Mur316770107	NonProperStrand	1	chr1	16770475	16770575	LTR	RMER17A2	ERVK	chr1RMER17A216770454	ProperStrand	1	1	-inf
chr17	39847173	39847242	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	142814958	142814979	protein_coding	St8sia1	intron	ENSMUSG00000030283	NonProperStrand	3	1	-5.4882
chr16	39315974	39316066	LTR	MLT1G1	MaLR	chr16MLT1G139315934	ProperStrand	1	chr16	39316402	39316502	SINE	PB1D7	Alu	chr16PB1D739316353	ProperStrand	1	1	-inf
chr5	146261174	146261230	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	115644746	115644787	protein_coding	2310067B10Rik	intron	ENSMUSG00000020747	NonProperStrand	47	1	-5.5389
chr13	109610108	109610157	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr6	148183196	148188079	protein_coding	Tmtc1	intron	ENSMUSG00000030306	ProperStrand	64	1	-7.8510
chrX	74583711	74583728	LINE	L1Md_A	L1	chrXL1Md_A74580852	NonProperStrand	2	chr5	65550554	65550630	protein_coding	Klhl5	intron	ENSMUSG00000054920	ProperStrand	40	1	-20.0320
chr17	39846405	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	140936471	140936494	LTR	IAPEz-int	ERVK	chr6IAPEz-int140934864	ProperStrand	1	1	-inf
chr1	160207267	160207328	protein_coding	Fam5b	intron	ENSMUSG00000004031	ProperStrand	20	chrX	13045042	13045062	protein_coding	Nyx	intron	ENSMUSG00000051228	ProperStrand	12	1	-17.6177
chr17	4082215	4082300	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr12	24711485	24711538	LTR	MMERGLN-int	ERV1	chr12MMERGLN-int24711149	ProperStrand	17	1	-10.2123
chrX	50023981	50024071	LINE	L1MA6	L1	chrXL1MA650023957	NonProperStrand	1	chrX	50023743	50023843	LTR	MTD	MaLR	chrXMTD50023530	ProperStrand	1	1	-inf
chr14	40810608	40810691	LINE	L1MA4	L1	chr14L1MA440810576	NonProperStrand	1	chr7	24566905	24566921	LTR	ORR1A0-int	MaLR	chr7ORR1A0-int24566507	NonProperStrand	7	1	-inf
chr2	27535783	27535817	protein_coding	Rxra	intron	ENSMUSG00000015846	ProperStrand	73	chr12	110695541	110695582	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-8.8019
chr12	54696787	54696901	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr7	121928381	121928410	protein_coding	Insc	intron	ENSMUSG00000048782	NonProperStrand	66	1	-10.1879
chr19	40350006	40352359	LINE	Lx8	L1	chr19Lx840352094	NonProperStrand	1	chr19	40327599	40349925	protein_coding	Pdlim1	intron	ENSMUSG00000055044	ProperStrand	44	1	-inf
chr1	134297578	134297641	LINE	L1ME4a	L1	chr1L1ME4a134297376	NonProperStrand	1	chr17	39847980	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	72775456	72775497	protein_coding	Robo1	intron	ENSMUSG00000022883	ProperStrand	177	chr1	89770483	89770527	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-7.3239
chr8	24438812	24438829	LTR	RLTR42-int	ERVK	chr8RLTR42-int24438702	ProperStrand	1	chr1	69674906	69675036	protein_coding	Ikzf2	intron	ENSMUSG00000025997	ProperStrand	19	1	-inf
chr2	53134834	53134924	LTR	MT2A	ERVL	chr2MT2A53134837	NonProperStrand	1	chr2	53134729	53134829	LTR	ORR1D2	MaLR	chr2ORR1D253134743	NonProperStrand	1	1	-inf
chr5	36689302	36689349	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	chr4	104471688	104471739	protein_coding	C8b	intron	ENSMUSG00000029656	ProperStrand	18	1	-12.1119
chr10	118714923	118715013	SINE	B2_Mm2	B2	chr10B2_Mm2118714892	ProperStrand	1	chr10	118714635	118714735	SINE	MIR	MIR	chr10MIR118714639	ProperStrand	1	1	-inf
chr15	47539993	47540029	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr17	28329491	28330565	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	108	1	-8.9786
chrX	130376331	130376415	LINE	L1MCa	L1	chrXL1MCa130376341	NonProperStrand	1	chrX	130384550	130384628	Simple_repeat	(GGGA)n	Simple_repeat	chrX(GGGA)n130384458	ProperStrand	1	1	-inf
chr7	132821650	132821717	protein_coding	Gtf3c1	intron	ENSMUSG00000032777	ProperStrand	67	chr4	47483026	47483102	protein_coding	Alg2	utr3	ENSMUSG00000039740	NonProperStrand	3	1	-18.1225
chr19	9894858	9894948	LINE	L1Md_F2	L1	chr19L1Md_F29894638	NonProperStrand	4	chr19	9893945	9894874	LINE	L1Md_T	L1	chr19L1Md_T9893937	NonProperStrand	3	1	-inf
chrX	77581547	77581634	LTR	MERVL-int	ERVL	chrXMERVL-int77577444	NonProperStrand	4	chr7	126796049	126796096	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-14.4535
chr12	110485866	110522494	LINE	L1_Mus1	L1	chr12L1_Mus1110484847	ProperStrand	31	chr12	110522531	110522631	LINE	Lx2	L1	chr12Lx2110522327	ProperStrand	6	3	-inf
chr9	123461876	123462036	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr6	58862980	58868593	protein_coding	Herc3	intron	ENSMUSG00000029804	ProperStrand	21	2	-5.1898
chr4	123408174	123408193	DNA	RMER30	MER1_type	chr4RMER30123408156	ProperStrand	1	chr17	70963742	70963826	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr2	107225698	107225788	LINE	L1_Mus2	L1	chr2L1_Mus2107225679	NonProperStrand	1	chr2	107225517	107225617	LINE	Lx2B	L1	chr2Lx2B107222968	ProperStrand	1	1	-inf
chr2	22744888	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	149120027	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	2	-3.2373
chr5	3765592	3765672	protein_coding	Ankib1	intron	ENSMUSG00000040351	ProperStrand	49	chr10	40359569	40359621	protein_coding	Ddo	utr3	ENSMUSG00000063428	ProperStrand	39	1	-13.3020
chr11	116757692	116757746	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr13	99492190	99492271	SINE	PB1D7	Alu	chr13PB1D799492178	NonProperStrand	1	1	-inf
chr17	70794575	70794665	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr7	126796720	126797346	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	4	-16.1106
chr11	69030315	69030363	LTR	RLTR18-int	ERVK	chr11RLTR18-int69030140	ProperStrand	2	chr5	30672992	30673295	protein_coding	Otof	intron	ENSMUSG00000062372	NonProperStrand	98	2	-inf
chr8	18950425	18950525	protein_coding-noncoding	Xkr5	utr3	ENSMUSG00000039814	ProperStrand	3	chr8	18950538	18950628	protein_coding	Xkr5	utr5	ENSMUSG00000039814	ProperStrand	15	3	-inf
chrX	144322299	144322416	SINE	B4	B4	chrXB4144322318	NonProperStrand	5	chrX	144322558	144322597	SINE	RSINE1	B4	chrXRSINE1144322563	NonProperStrand	4	4	-inf
chr17	39847207	39847238	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	16111039	16111068	protein_coding	Ythdf3	intron	ENSMUSG00000047213	ProperStrand	4	1	-4.8204
chr17	39846955	39847025	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr17	25035902	25036305	protein_coding	Mapk8ip3	intron	ENSMUSG00000024163	ProperStrand	1	1	-inf
chr2	90979790	90979864	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	chr16	31196350	31196412	protein_coding	Acap2	intron	ENSMUSG00000049076	ProperStrand	103	1	-9.9718
chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	chr10	61379000	61379104	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-8.3200
chr17	39847844	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	31166146	31166162	protein_coding	AB041803	intron	ENSMUSG00000044471	NonProperStrand	4	1	-3.7035
chr11	102567991	102568100	LTR	ORR1A2	MaLR	chr11ORR1A2102567754	ProperStrand	37	chr2	3313610	3313644	LTR	MTD	MaLR	chr2MTD3313501	ProperStrand	2	2	-inf
chr12	108236741	108236831	DNA	MER5A	MER1_type	chr12MER5A108236744	ProperStrand	5	chr12	108236596	108236696	SINE	B4A	B4	chr12B4A108236527	ProperStrand	5	5	-inf
chr2	84416945	84417045	LTR	MTA_Mm-int	MaLR	chr2MTA_Mm-int84416907	NonProperStrand	1	chr2	84417042	84417132	LTR	MTA_Mm	MaLR	chr2MTA_Mm84417034	NonProperStrand	1	1	-inf
chr11	102800273	102800437	lincRNA	Gm17536	intron	ENSMUSG00000091056	NonProperStrand	62	chr11	102800789	102800942	protein_coding	C1ql1	utr3	ENSMUSG00000045532	ProperStrand	9	2	-inf
chr17	12685635	12685721	protein_coding	Slc22a3	intron	ENSMUSG00000023828	ProperStrand	39	chr4	139368476	139368552	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	1	-12.7944
chr9	46662243	46662343	LTR	LTR16A	ERVL	chr9LTR16A46662143	ProperStrand	1	chr9	46662021	46662111	SINE	B3	B2	chr9B346661906	ProperStrand	1	1	-inf
chr2	29072814	29072835	protein_coding	Ntng2	intron	ENSMUSG00000035513	NonProperStrand	31	chr12	110691605	110691647	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-10.5271
chr15	98853139	98853229	SINE	B2_Mm1a	B2	chr15B2_Mm1a98853102	NonProperStrand	3	chr15	98852807	98852907	SINE	B3A	B2	chr15B3A98852732	NonProperStrand	2	2	-inf
chr11	68903253	68903287	protein_coding	Vamp2	exon	ENSMUSG00000020894	ProperStrand	37	chr9	115185249	115185293	protein_coding	Stt3b	intron	ENSMUSG00000032437	NonProperStrand	44	1	-13.6277
chr17	85193549	85193639	DNA	URR1A	MER1_type	chr17URR1A85193462	NonProperStrand	4	chr17	85193708	85193808	LTR	ORR1E	MaLR	chr17ORR1E85193685	NonProperStrand	5	4	-inf
chr11	94294337	94294356	protein_coding	Cacna1g	intron	ENSMUSG00000020866	NonProperStrand	11	chr9	123461931	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chrX	48709746	48709840	LINE	L1Md_A	L1	chrXL1Md_A48709492	ProperStrand	2	chr17	39846952	39847004	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39845848	39845879	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr17	56256931	56257053	protein_coding	Plin5	utr5	ENSMUSG00000011305	NonProperStrand	2	2	-inf
chr9	53227719	53227747	protein_coding	4930550C14Rik	intron	ENSMUSG00000005131	NonProperStrand	5	chr11	88531464	88531546	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-11.4004
chr13	58553835	58553914	SINE	B1_Mus1	Alu	chr13B1_Mus158553795	NonProperStrand	2	chr5	124383609	124383663	protein_coding	Ccdc62	intron	ENSMUSG00000061882	NonProperStrand	30	1	-21.6628
chr17	25909182	25909243	SINE	B1_Mur3	Alu	chr17B1_Mur325909109	NonProperStrand	1	chr17	25909015	25909047	Simple_repeat	(CAAA)n	Simple_repeat	chr17(CAAA)n25909013	NonProperStrand	1	1	-inf
chr2	69723773	69723863	antisense	4930550G17Rik	.	ENSMUSG00000085735	NonProperStrand	1	chr2	69723573	69723673	protein_coding	Mettl5	utr5	ENSMUSG00000051730	ProperStrand	5	1	-inf
chr17	39846655	39846731	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	25588682	25588749	Simple_repeat	(CAGAG)n	Simple_repeat	chr17(CAGAG)n25588685	ProperStrand	1	1	-inf
chr17	39846353	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	61563267	61563285	Simple_repeat	(TATG)n	Simple_repeat	chr9(TATG)n61563220	NonProperStrand	1	1	-inf
chr16	33477955	33478041	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	chr9	21237829	21237848	protein_coding	Dnm2	intron	ENSMUSG00000033335	ProperStrand	26	1	-12.1166
chr17	39846883	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	113076050	113076067	LTR	ORR1A0	MaLR	chr5ORR1A0113075982	ProperStrand	2	1	-5.3533
chr4	127169608	127169708	DNA	RCHARR1	MER1_type	chr4RCHARR1127169533	ProperStrand	2	chr4	127169429	127169519	SINE	B4A	B4	chr4B4A127169348	NonProperStrand	2	2	-inf
chr5	146261024	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	103297309	103297440	protein_coding	Atp7a	intron	ENSMUSG00000033792	NonProperStrand	68	1	-4.8208
chr5	71940210	71940300	DNA	BLACKJACK	AcHobo	chr5BLACKJACK71939894	NonProperStrand	1	chr5	71940533	71940633	LTR	ORR1D1	MaLR	chr5ORR1D171940285	ProperStrand	1	1	-inf
chr14	7025835	7025925	LINE	Lx8	L1	chr14Lx87025736	ProperStrand	2	chr17	39847702	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr4	34838624	34838670	LTR	ORR1D2	MaLR	chr4ORR1D234838572	NonProperStrand	1	chr4	34839174	34839223	SINE	B2_Mm2	B2	chr4B2_Mm234839071	NonProperStrand	1	1	-inf
chr15	12119185	12119238	LINE	L1Md_T	L1	chr15L1Md_T12118922	ProperStrand	1	chr9	110935046	110935104	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-inf
chr12	52567206	52567266	LINE	Lx7	L1	chr12Lx752566337	ProperStrand	2	chr12	52518565	52518644	protein_coding	Scfd1	intron	ENSMUSG00000020952	ProperStrand	18	1	-21.0482
chr1	134298489	134298584	LTR	RLTR25B	ERVK	chr1RLTR25B134297671	NonProperStrand	10	chr8	105524487	105524554	SINE	RSINE1	B4	chr8RSINE1105524482	NonProperStrand	4	3	-inf
chr16	23111298	23111319	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	123	chr3	129571685	129571716	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-8.1622
chr17	39847506	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	127981239	127981416	SINE	B1_Mus1	Alu	chr7B1_Mus1127981208	NonProperStrand	4	1	-3.7035
chr16	23110381	23110478	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr16	11828593	11887589	protein_coding	Cpped1	intron	ENSMUSG00000065979	ProperStrand	72	1	-9.5436
chr17	39848143	39848253	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	67707169	67707205	protein_coding	AA987161	intron	ENSMUSG00000058093	ProperStrand	5	1	-6.1691
chr17	39846844	39846944	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	3852670	3852760	protein_coding	Zfp174	intron	ENSMUSG00000054939	NonProperStrand	4	1	-3.6552
chr19	7020918	7020989	protein_coding	Bad	intron	ENSMUSG00000024959	NonProperStrand	24	chr10	78052830	78053937	protein_coding	Syde1	exon	ENSMUSG00000032714	NonProperStrand	32	2	-inf
chr2	5379270	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr2	91596076	91596134	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-3.9561
chrX	52302849	52302894	LINE	L1_Mm	L1	chrXL1_Mm52302616	ProperStrand	1	chr13	44869942	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr2	5379131	5379188	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chrX	162867090	162867158	protein_coding	Ofd1	intron	ENSMUSG00000040586	ProperStrand	27	2	-9.9580
chr14	19927557	19927638	LINE	L1Md_T	L1	chr14L1Md_T19927177	NonProperStrand	10	chr14	19924306	19924337	LINE	L1_Mus4	L1	chr14L1_Mus419924177	ProperStrand	3	1	-20.3349
chr17	39845816	39845921	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr13	67342859	67342901	SINE	B4	B4	chr13B467342811	ProperStrand	3	1	-7.9693
chrX	131754432	131754523	LINE	L1_Mus1	L1	chrXL1_Mus1131754175	NonProperStrand	1	chrX	131753912	131754012	LINE	Lx9	L1	chrXLx9131753667	ProperStrand	1	1	-inf
chr5	147877062	147877110	protein_coding	Lnx2	intron	ENSMUSG00000016520	NonProperStrand	26	chr9	98206551	98206577	protein_coding	Nmnat3	intron	ENSMUSG00000032456	NonProperStrand	4	1	-20.9996
chr3	95183901	95183955	LTR	RLTR45-int	ERVK	chr3RLTR45-int95183883	ProperStrand	1	chr1	128369729	128369793	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-inf
chr15	83358171	83358247	protein_coding	Bik	intron	ENSMUSG00000016758	NonProperStrand	36	chr8	95737322	95737357	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-13.2299
chr11	17240052	17240152	LINE	Lx7	L1	chr11Lx717239549	ProperStrand	1	chr1	85213613	85213703	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	NonProperStrand	16	1	-inf
chr17	38578981	38579071	LINE	L1_Mus3	L1	chr17L1_Mus338578464	NonProperStrand	1	chr17	38579436	38579536	LTR	RLTR1B	ERV1	chr17RLTR1B38579370	ProperStrand	1	1	-inf
chr4	40718808	40718898	LTR	RMER13A	ERVK	chr4RMER13A40718371	NonProperStrand	2	chr12	54696895	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-17.8206
chr4	137557306	137557347	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr9	121322157	121322219	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	242	1	-5.1893
chr3	91153775	91153865	LTR	LTRIS2	ERV1	chr3LTRIS291153570	NonProperStrand	1	chr3	89066144	89066244	protein_coding	Dpm3	intron	ENSMUSG00000042737	NonProperStrand	1	1	-inf
chr3	62159158	62159218	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	chr5	113216318	113216368	protein_coding	Myo18b	intron	ENSMUSG00000072720	ProperStrand	234	1	-10.1624
chr14	27375350	27375448	SINE	B4A	B4	chr14B4A27375343	ProperStrand	4	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr16	8691585	8691615	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr12	41132165	41132221	protein_coding	Zfp277	intron	ENSMUSG00000055917	NonProperStrand	75	1	-8.2182
chr7	67961684	67961778	LINE	Lx2A1	L1	chr7Lx2A167961594	NonProperStrand	1	chr9	123462117	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	118674951	118674983	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr3	142395379	142395469	protein_coding	Ccbl2	intron	ENSMUSG00000040213	NonProperStrand	11	1	-9.4022
chr4	41050744	41050844	SINE	B2_Mm1t	B2	chr4B2_Mm1t41050734	ProperStrand	1	chr17	26117365	26117455	protein_coding	Solh	intron	ENSMUSG00000037326	NonProperStrand	5	1	-inf
chr2	91237968	91238016	protein_coding	1110051M20Rik	intron	ENSMUSG00000040591	NonProperStrand	44	chr10	128275527	128275615	protein_coding	Sarnp	intron	ENSMUSG00000078427	ProperStrand	41	2	-inf
chr4	138845673	138845717	protein_coding-noncoding	Capzb	utr5	ENSMUSG00000028745	NonProperStrand	1	chr4	138845887	138845941	protein_coding	Capzb	intron	ENSMUSG00000028745	NonProperStrand	22	1	-inf
chr17	39848164	39848196	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	155529964	155530080	LTR	RMER13B	ERVK	chr4RMER13B155529314	NonProperStrand	2	1	-8.4422
chr9	123462079	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	120081750	120081768	protein_coding	Plcg2	intron	ENSMUSG00000034330	NonProperStrand	14	1	-3.7266
chr11	96953049	96953139	SINE	B3	B2	chr11B396953045	NonProperStrand	3	chr11	96952950	96953050	Simple_repeat	(GGAGA)n	Simple_repeat	chr11(GGAGA)n96952855	NonProperStrand	3	3	-inf
chr6	92204291	92204346	LTR	MTD	MaLR	chr6MTD92204229	ProperStrand	1	chr6	92205468	92205542	LTR	ORR1D2	MaLR	chr6ORR1D292205476	NonProperStrand	1	1	-inf
chr17	39847271	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	69091702	69091787	Low_complexity	GA-rich	Low_complexity	chr11GA-rich69091703	ProperStrand	1	1	-inf
chr17	25148390	25148418	protein_coding	Cramp1l	intron	ENSMUSG00000038002	NonProperStrand	32	chr13	97190589	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.3591
chr4	133040230	133040281	protein_coding	Fam46b	intron	ENSMUSG00000046694	ProperStrand	24	chr4	133050749	133050790	protein_coding	Trnp1	intron	ENSMUSG00000056596	NonProperStrand	17	1	-16.4349
chr14	70496773	70496863	DNA	MER117	MER1_type	chr14MER11770496764	ProperStrand	1	chr6	91979507	91979607	protein_coding	Fgd5	intron	ENSMUSG00000034037	ProperStrand	29	1	-inf
chr2	156391220	156391254	protein_coding	0610011L14Rik	intron	ENSMUSG00000027628	NonProperStrand	56	chr1	131573850	131573874	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-9.1041
chr1	135453205	135454050	LINE	L1_Mus4	L1	chr1L1_Mus4135452637	NonProperStrand	2	chr9	123462115	123462145	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	73999804	73999824	protein_coding	Galnt14	intron	ENSMUSG00000024064	NonProperStrand	4	chr16	20681856	20682073	protein_coding	Eif4g1	exon	ENSMUSG00000045983	ProperStrand	123	2	-21.2443
chr5	115489511	115489548	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr9	63361694	63361762	protein_coding	Iqch	intron	ENSMUSG00000037801	ProperStrand	108	1	-7.9797
chr9	46213902	46214002	LINE	L1MDb	L1	chr9L1MDb46213880	NonProperStrand	2	chr9	46213775	46213865	LTR	MTB_Mm	MaLR	chr9MTB_Mm46213484	NonProperStrand	2	2	-inf
chr11	51992521	51992596	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	chr19	37271698	37271763	protein_coding	Cpeb3	intron	ENSMUSG00000039652	ProperStrand	70	1	-9.7698
chr10	128624613	128625283	LINE	L1Md_F2	L1	chr10L1Md_F2128625017	ProperStrand	7	chr9	123461957	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr1	168355790	168355890	LINE	L1M2	L1	chr1L1M2168355712	ProperStrand	1	chr1	168355978	168356068	SINE	B3	B2	chr1B3168355959	ProperStrand	2	1	-inf
chr15	80078709	80078778	protein_coding	Smcr7l	exon	ENSMUSG00000022412	NonProperStrand	429	chr1	72256604	72256671	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-7.4169
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	21009627	21009702	protein_coding	Trappc8	intron	ENSMUSG00000033382	ProperStrand	5	1	-3.1907
chr9	123208197	123208264	LTR	RMER12	ERVK	chr9RMER12123207856	ProperStrand	1	chr7	56135592	56135669	lincRNA	Gm2788	intron	ENSMUSG00000085995	ProperStrand	6	1	-inf
chr6	91706353	91706407	protein_coding	Slc6a6	utr3	ENSMUSG00000030096	ProperStrand	99	chr13	97190563	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.1629
chr14	51230325	51230416	LINE	L1_Mus3	L1	chr14L1_Mus351226515	ProperStrand	1	chr1	79495138	79495238	LINE	L1Md_F2	L1	chr1L1Md_F279493877	ProperStrand	2	1	-inf
chr12	81873943	81873982	LTR	RLTR11A	ERVK	chr12RLTR11A81873497	NonProperStrand	1	chr17	39847655	39847743	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847026	39847049	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	9623864	9623966	LTR	ORR1C2	MaLR	chr4ORR1C29623892	NonProperStrand	1	1	-inf
chr9	123461807	123461945	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr1	59204562	59204579	protein_coding	Mpp4	intron	ENSMUSG00000079550	NonProperStrand	7	1	-5.1121
chr1	143608437	143608453	LINE	Lx	L1	chr1Lx143607105	ProperStrand	1	chr17	39847954	39848036	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	44205401	44205501	LINE	L1Md_T	L1	chr6L1Md_T44205263	ProperStrand	1	chr6	44205198	44205288	LINE	Lx7	L1	chr6Lx744203891	NonProperStrand	2	1	-inf
chr8	114914833	114914914	LTR	MT2A	ERVL	chr8MT2A114914787	ProperStrand	1	chr9	123461931	123462011	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	98701664	98701764	SINE	B3	B2	chr9B398701569	NonProperStrand	2	chr9	98701761	98701852	SINE	B4	B4	chr9B498701785	NonProperStrand	2	2	-inf
chr15	89538360	89538413	LTR	MERVL_2A-int	ERVL	chr15MERVL_2A-int89538270	ProperStrand	1	chr17	39847445	39847502	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	33784595	33784700	protein_coding	Rab23	intron	ENSMUSG00000004768	NonProperStrand	14	chr3	9541778	9541827	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-9.4329
chr8	80543082	80543172	LTR	RLTR9A	ERVK	chr8RLTR9A80542999	NonProperStrand	1	chr8	71611172	71611272	protein_coding	Slc18a1	intron	ENSMUSG00000036330	NonProperStrand	65	1	-inf
chr2	90395138	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr4	43911964	43912049	protein_coding	Reck	intron	ENSMUSG00000028476	ProperStrand	19	1	-12.0529
chr17	39847741	39847758	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	45740908	45741005	SINE	B3A	B2	chr17B3A45740876	ProperStrand	1	1	-inf
chr11	4356628	4356707	SINE	B3	B2	chr11B34356519	NonProperStrand	1	chr13	107819204	107819273	SINE	B4	B4	chr13B4107819119	NonProperStrand	1	1	-inf
chr17	39847636	39847674	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	22371495	22371570	pseudogene	Defa-ps7	.	ENSMUSG00000080722	ProperStrand	1	1	-inf
chr7	92829693	92829732	LINE	Lx2B	L1	chr7Lx2B92829620	NonProperStrand	1	chr17	39848098	39848147	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr4	123438662	123439479	SINE	B3	B2	chr4B3123439370	ProperStrand	1	chr9	110281284	110281337	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr17	39848095	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	36479241	36479277	protein_coding	Snx31	intron	ENSMUSG00000013611	ProperStrand	2	1	-8.4422
chr14	70611691	70611713	lincRNA	Gm16600	intron	ENSMUSG00000085557	NonProperStrand	20	chr15	50703595	50703627	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	1	-14.4278
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr7	30190553	30192189	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	ProperStrand	147	1	-9.8299
chr1	184131125	184131225	LTR	RLTR13B2	ERVK	chr1RLTR13B2184131024	ProperStrand	1	chr1	184130730	184130820	SINE	B1_Mus1	Alu	chr1B1_Mus1184130704	NonProperStrand	1	1	-inf
chr17	39844649	39844729	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr8	72994849	72994892	protein_coding	Klhl26	intron	ENSMUSG00000055707	ProperStrand	27	1	-4.0333
chr1	63440353	63440373	SINE	B1F2	Alu	chr1B1F263440252	NonProperStrand	1	chr9	123462020	123462129	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	140892659	140892696	protein_coding	Uros	intron	ENSMUSG00000030979	NonProperStrand	27	chr6	47788084	47788131	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	1	-14.4123
chr1	167340515	167340538	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	chr1	188974176	188974306	protein_coding	Spata17	intron	ENSMUSG00000026611	ProperStrand	80	1	-7.9986
chr13	97190546	97190592	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr15	75862476	75863416	protein_coding	K230010J24Rik	intron	ENSMUSG00000075594	ProperStrand	9	1	-8.9531
chr9	119240968	119241022	LTR	ORR1A2	MaLR	chr9ORR1A2119240887	NonProperStrand	5	chr1	128374451	128374495	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-14.4575
chr2	49751378	49751464	protein_coding	Lypd6b	intron	ENSMUSG00000026765	ProperStrand	54	chr2	163084760	163084810	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-8.5986
chrX	153152782	153152882	LINE	L1MB2	L1	chrXL1MB2153152808	ProperStrand	1	chrX	153152675	153152765	LINE	Lx6	L1	chrXLx6153152252	NonProperStrand	1	1	-inf
chr18	47006288	47006388	LINE	L1MB4	L1	chr18L1MB447006300	ProperStrand	1	chr18	47006593	47006683	LTR	ORR1A4	MaLR	chr18ORR1A447006514	ProperStrand	1	1	-inf
chr5	97418240	97418322	SINE	B1F	Alu	chr5B1F97418227	NonProperStrand	1	chr11	69668850	69668906	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-inf
chr15	41832165	41832280	LINE	L1Md_F2	L1	chr15L1Md_F241831405	NonProperStrand	1	chr6	71579993	71580011	protein_coding	Kdm3a	intron	ENSMUSG00000053470	ProperStrand	2	1	-inf
chr19	13677603	13677622	LTR	ETnERV3-int	ERVK	chr19ETnERV3-int13677297	ProperStrand	1	chr5	121976615	121976708	protein_coding-noncoding	Mapkapk5	utr3	ENSMUSG00000029454	ProperStrand	9	1	-inf
chr17	39846411	39846497	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	30246320	30246338	protein_coding	Mboat1	intron	ENSMUSG00000038732	NonProperStrand	5	1	-3.1907
chr5	124280958	124281033	SINE	B3A	B2	chr5B3A124280842	ProperStrand	2	chr9	62797677	62811058	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	2	-inf
chr3	102179582	102179672	LINE	L1MB5	L1	chr3L1MB5102179607	ProperStrand	1	chr3	102179454	102179554	LTR	ORR1C1	MaLR	chr3ORR1C1102179254	NonProperStrand	1	1	-inf
chr5	66372933	66374002	protein_coding-noncoding	9130230L23Rik	utr3	ENSMUSG00000054598	ProperStrand	11	chr5	66374023	66381335	protein_coding	9130230L23Rik	intron	ENSMUSG00000054598	ProperStrand	75	5	-inf
chr6	55727115	55727215	LINE	L1_Mus4	L1	chr6L1_Mus455727121	ProperStrand	1	chr6	55727407	55727497	LTR	IAPLTR2_Mm	ERVK	chr6IAPLTR2_Mm55727414	NonProperStrand	1	1	-inf
chr11	87595323	87595385	protein_coding-noncoding	Bzrap1	utr5	ENSMUSG00000034156	ProperStrand	3	chr14	65560248	65563257	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	1	-17.9119
chr17	39843351	39843408	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	131267956	131268004	protein_coding	Papss1	intron	ENSMUSG00000028032	NonProperStrand	45	1	-3.0729
chr17	39846406	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	35660461	35660498	LTR	RMER4B	ERVK	chr18RMER4B35660383	NonProperStrand	2	1	-5.3533
chr7	100367809	100367909	LINE	L1Md_F	L1	chr7L1Md_F100367718	NonProperStrand	2	chr7	100367596	100367687	LINE	L1Md_T	L1	chr7L1Md_T100361410	NonProperStrand	3	2	-inf
chr17	53507593	53507615	LTR	IAPLTR2_Mm	ERVK	chr17IAPLTR2_Mm53507471	ProperStrand	1	chr17	53507164	53507277	LTR	MERVL-int	ERVL	chr17MERVL-int53505905	NonProperStrand	3	1	-inf
chr11	101459166	101459276	antisense	Gm11634	.	ENSMUSG00000085486	ProperStrand	18	chr6	71882555	71882584	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-12.9454
chr11	26196737	26196758	LINE	L1MB1	L1	chr11L1MB126196666	NonProperStrand	1	chr17	39847017	39847151	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	127881386	127881474	LTR	MLT1K	MaLR	chr7MLT1K127881388	ProperStrand	1	chr8	124888610	124888644	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-inf
chr17	39846373	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	82734891	82734922	LTR	MLT1L	MaLR	chr6MLT1L82734790	ProperStrand	1	1	-inf
chr9	123461957	123462175	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	117914564	117969147	protein_coding	Dnahc17	intron	ENSMUSG00000033987	ProperStrand	36	2	-3.7021
chr17	39847179	39847352	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	25575455	25575471	LTR	RLTR6-int	ERV1	chr2RLTR6-int25575016	NonProperStrand	11	2	-4.9635
chr12	44616319	44616352	LINE	L1_Mus3	L1	chr12L1_Mus344616116	NonProperStrand	1	chr6	32910453	32910496	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-inf
chr4	130568574	130568627	LTR	IAPLTR2b	ERVK	chr4IAPLTR2b130568454	ProperStrand	1	chr4	130563510	130563593	lincRNA	A930031H19Rik	intron	ENSMUSG00000086262	ProperStrand	41	1	-inf
chr14	108986434	108986534	LTR	MTE-int	MaLR	chr14MTE-int108986408	NonProperStrand	1	chr14	108986053	108986143	SINE	B2_Mm2	B2	chr14B2_Mm2108985988	ProperStrand	1	1	-inf
chr11	54849707	54849755	LINE	L1ME1	L1	chr11L1ME154849681	ProperStrand	1	chr11	54849997	54850024	LTR	RMER17C	ERVK	chr11RMER17C54849813	ProperStrand	1	1	-inf
chr17	39847081	39847102	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	37714738	37714757	SINE	B3A	B2	chr13B3A37714739	NonProperStrand	1	1	-inf
chr18	46304968	46305072	Other	RMER1B	Other	chr18RMER1B46304053	NonProperStrand	6	chr16	33913501	33913555	protein_coding	Itgb5	intron	ENSMUSG00000022817	ProperStrand	32	1	-18.0402
chr17	28240288	28240397	SINE	B4A	B4	chr17B4A28240267	NonProperStrand	1	chr4	126044371	126044399	protein_coding	Eif2c3	intron	ENSMUSG00000028842	ProperStrand	2	1	-inf
chr10	30811139	30811214	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	1	-16.4138
chr6	92773599	92773667	protein_coding	Adamts9	intron	ENSMUSG00000030022	ProperStrand	32	chr2	138257010	138257099	protein_coding	Btbd3	intron	ENSMUSG00000062098	ProperStrand	66	1	-13.1005
chr12	35937664	35937754	LTR	IAPEz-int	ERVK	chr12IAPEz-int35937613	NonProperStrand	1	chr12	35937477	35937577	LTR	IAPLTR2_Mm	ERVK	chr12IAPLTR2_Mm35937147	NonProperStrand	1	1	-inf
chr17	39847440	39847499	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	192847186	192847202	protein_coding	Mfsd7b	intron	ENSMUSG00000066595	ProperStrand	2	1	-5.4040
chr9	63959326	63959417	SINE	B4	B4	chr9B463959261	ProperStrand	1	chr9	63974766	63974805	protein_coding	Lctl	exon	ENSMUSG00000032401	NonProperStrand	22	1	-inf
chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	chr3	122437389	122437481	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-10.0422
chr1	24016301	24016354	LTR	ORR1D1	MaLR	chr1ORR1D124016209	NonProperStrand	1	chr5	146261277	146261333	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-inf
chr1	100881939	100882039	SINE	B4	B4	chr1B4100881770	NonProperStrand	1	chr1	100882081	100882171	Simple_repeat	(CATA)n	Simple_repeat	chr1(CATA)n100882045	NonProperStrand	1	1	-inf
chr13	44785349	44785439	SINE	B1_Mur1	Alu	chr13B1_Mur144785361	ProperStrand	2	chr13	44785452	44785552	SINE	B1_Mus1	Alu	chr13B1_Mus144785443	NonProperStrand	2	2	-inf
chr2	75547988	75548018	lincRNA	E030042O20Rik	exon	ENSMUSG00000087222	NonProperStrand	1	chr17	24721076	24721184	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-inf
chr9	22284871	22284961	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	chr9	22284766	22284866	pseudogene	Gm2976	.	ENSMUSG00000090067	ProperStrand	2	2	-inf
chr9	123461965	123462005	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	167515449	167515555	protein_coding	Cebpb	utr3	ENSMUSG00000056501	ProperStrand	16	1	-3.4729
chr19	30690947	30690972	protein_coding	Prkg1	intron	ENSMUSG00000052920	ProperStrand	30	chr19	47428511	47428555	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	ProperStrand	170	1	-11.3333
chrX	38428163	38428253	LINE	Lx	L1	chrXLx38427991	NonProperStrand	5	chrX	38429268	38429368	LINE	Lx4B	L1	chrXLx4B38429253	ProperStrand	3	2	-inf
chr10	81277948	81278013	LTR	RLTR17	ERVK	chr10RLTR1781277940	NonProperStrand	1	chr17	39847658	39847754	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39848631	39848668	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr6	40329568	40352370	LINE	Lx8	L1	chr6Lx840346922	NonProperStrand	1	1	-inf
chr17	39847666	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	67400480	67400584	protein_coding	Zfp457	intron	ENSMUSG00000055341	ProperStrand	3	1	-4.3512
chr5	31294120	31294657	LINE	Lx8	L1	chr5Lx831294070	ProperStrand	1	chr17	39847503	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	6590545	6590571	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr2	154792884	154793012	protein_coding	a	intron	ENSMUSG00000027596	ProperStrand	61	1	-7.9165
chr2	22744876	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	24984418	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-4.7842
chr10	123149694	123149736	protein_coding	Fam19a2	intron	ENSMUSG00000044071	NonProperStrand	176	chr16	44222498	44222549	protein_coding	Gm608	utr3	ENSMUSG00000068284	ProperStrand	29	1	-11.3325
chr9	123002732	123002845	protein_coding	Zdhhc3	intron	ENSMUSG00000025786	NonProperStrand	28	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.1650
chr10	56128360	56128450	LTR	ORR1B1	MaLR	chr10ORR1B156128350	ProperStrand	1	chr10	56128131	56128231	SINE	B1_Mm	Alu	chr10B1_Mm56128094	NonProperStrand	1	1	-inf
chr1	192745640	192745687	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr8	94245304	94245387	Simple_repeat	(TC)n	Simple_repeat	chr8(TC)n94245291	ProperStrand	1	1	-inf
chr6	125164791	125164876	Simple_repeat	(TA)n	Simple_repeat	chr6(TA)n125164805	NonProperStrand	4	chr8	84473042	84473096	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-12.1692
chr13	9834302	9834430	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr17	39847057	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	20	-7.1091
chr12	87428573	87428591	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	78	chr11	104387358	104387394	protein_coding	Cdc27	intron	ENSMUSG00000020687	ProperStrand	27	1	-13.1108
chrX	113104040	113104076	LINE	Lx6	L1	chrXLx6113103933	NonProperStrand	2	chr9	123462074	123462144	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	34950980	34951076	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr4	140951511	140951548	protein_coding	Clcnka	exon	ENSMUSG00000033770	NonProperStrand	8	1	-14.7770
chr12	4452627	4452717	protein_coding	Ncoa1	intron	ENSMUSG00000020647	ProperStrand	80	chr13	112578188	112578288	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-3.6671
chr4	74366504	74366545	LINE	L1Md_F2	L1	chr4L1Md_F274365907	ProperStrand	1	chr11	48814355	48814406	protein_coding	Olfr56	intron	ENSMUSG00000040328	NonProperStrand	34	1	-inf
chr1	181967944	181967985	protein_coding-noncoding	Cdc42bpa	utr5	ENSMUSG00000026490	NonProperStrand	4	chr10	28263648	28263699	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	1	-15.8771
chr4	135867157	135867257	protein_coding	Hnrnpr	intron	ENSMUSG00000066037	ProperStrand	3	chr4	135863525	135867164	pseudogene	Gm13013	.	ENSMUSG00000081330	NonProperStrand	2	1	-20.2824
chr6	6155050	6155088	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr12	18534874	18534923	protein_coding	5730507C01Rik	intron	ENSMUSG00000073197	ProperStrand	6	1	-14.2022
chr3	133079838	133079876	LINE	Lx6	L1	chr3Lx6133079091	ProperStrand	1	chr13	104161065	104166877	Simple_repeat	(TC)n	Simple_repeat	chr13(TC)n104161072	NonProperStrand	1	1	-inf
chr2	36402065	36402165	LINE	L1Md_A	L1	chr2L1Md_A36398341	ProperStrand	1	chr7	47186433	47186523	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	1	-inf
chr17	39847038	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	115338563	115338582	lincRNA	3110099E03Rik	intron	ENSMUSG00000085582	NonProperStrand	2	1	-5.3533
chr11	88628142	88628222	SINE	B4	B4	chr11B488628149	NonProperStrand	2	chr17	39843675	39843710	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr17	39845125	39845172	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr14	118650065	118650098	lincRNA	Gm4675	intron	ENSMUSG00000090534	NonProperStrand	19	1	-4.3349
chr11	80032726	80032800	protein_coding	Rhot1	intron	ENSMUSG00000017686	ProperStrand	27	chr18	20558310	20558339	protein_coding	Dsg1b	intron	ENSMUSG00000061928	ProperStrand	9	1	-17.5102
chr12	21020238	21020338	protein_coding	Asap2	intron	ENSMUSG00000052632	ProperStrand	137	chr12	24067880	24067970	pseudogene	Gm4437	.	ENSMUSG00000092445	ProperStrand	17	2	-19.9740
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	9256555	9256644	protein_coding	Zbtb10	intron	ENSMUSG00000069114	ProperStrand	5	1	-3.1907
chr17	39846460	39846494	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	126684217	126684241	SINE	B1_Mur4	Alu	chr4B1_Mur4126684184	NonProperStrand	2	2	-inf
chr9	70099129	70102844	protein_coding	Myo1e	intron	ENSMUSG00000032220	NonProperStrand	28	chr7	133006965	133007065	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	1	-10.3912
chr2	155160646	155160745	protein_coding-noncoding	Pigu	utr3	ENSMUSG00000038383	NonProperStrand	2	chr1	55603113	55603134	protein_coding	Plcl1	intron	ENSMUSG00000038349	ProperStrand	14	1	-19.5799
chr17	39846823	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	123931752	123931881	protein_coding	Il31	utr5	ENSMUSG00000029437	NonProperStrand	1	1	-inf
chr5	145184635	145187175	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	chr4	136538207	136538246	protein_coding	Zbtb40	utr3	ENSMUSG00000060862	ProperStrand	82	1	-10.4921
chr3	158854025	158854125	LTR	RLTR14	ERV1	chr3RLTR14158854039	NonProperStrand	1	chr3	158854185	158854275	LTR	RLTR14	ERV1	chr3RLTR14158854146	NonProperStrand	1	1	-inf
chr17	23823043	23823109	LTR	MT2_Mm	ERVL	chr17MT2_Mm23822986	NonProperStrand	3	chr2	52938308	52938340	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	1	-16.2015
chr12	106083867	106083968	protein_coding	Clmn	intron	ENSMUSG00000021097	NonProperStrand	79	chr1	180594780	180597337	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	1	-9.3460
chr2	10434487	10434517	miRNA	Mir669m-1	.	ENSMUSG00000089570	ProperStrand	1	chr2	10436271	10436336	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr2	71856647	71856745	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-8.5966
chr1	161864782	161864873	LTR	MLT2B3	ERVL	chr1MLT2B3161864519	ProperStrand	1	chr3	59249134	59249234	Low_complexity	CT-rich	Low_complexity	chr3CT-rich59249035	ProperStrand	1	1	-inf
chr9	110281288	110281307	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr15	86194988	86195096	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-4.4110
chr5	120155839	120155937	SINE	B1_Mur4	Alu	chr5B1_Mur4120155831	NonProperStrand	1	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	26173223	26173323	protein_coding-noncoding	Rab11fip3	utr3	ENSMUSG00000037098	NonProperStrand	2	chr1	51863550	51863640	protein_coding	Myo1b	intron	ENSMUSG00000018417	ProperStrand	53	1	-19.2441
chr17	39846660	39847028	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	35181991	35182343	protein_coding	Stom	intron	ENSMUSG00000026880	ProperStrand	16	3	-3.8697
chr10	76811027	76811127	protein_coding	Adarb1	intron	ENSMUSG00000020262	ProperStrand	178	chr2	142012732	142012822	protein_coding	Macrod2	intron	ENSMUSG00000068205	ProperStrand	94	1	-8.9411
chr1	42888759	42888859	LTR	ORR1E	MaLR	chr1ORR1E42888767	NonProperStrand	1	chr1	42889037	42889127	LTR	RMER20B	ERVK	chr1RMER20B42888930	ProperStrand	1	1	-inf
chr4	132270078	132270153	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr11	102153504	102153550	protein_coding	Atxn7l3	intron	ENSMUSG00000059995	ProperStrand	4	1	-16.5338
chr3	34662485	34662517	SINE	B1_Mus2	Alu	chr3B1_Mus234662423	ProperStrand	1	chr11	119776372	119776428	protein_coding	Chmp6	intron	ENSMUSG00000025371	ProperStrand	7	1	-inf
chr17	39846659	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	38996171	38996190	protein_coding	Nms	exon	ENSMUSG00000067604	ProperStrand	4	1	-3.6552
chr12	61319216	61319307	LINE	Lx5	L1	chr12Lx561318803	NonProperStrand	1	chr12	61319432	61319533	LINE	Lx5	L1	chr12Lx561319338	NonProperStrand	1	1	-inf
chr8	3609912	3610002	protein_coding-noncoding	Xab2	utr3	ENSMUSG00000019470	NonProperStrand	3	chr8	3610002	3610102	protein_coding	Xab2	utr3	ENSMUSG00000019470	NonProperStrand	3	1	-20.2168
chr17	12992129	12992148	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	chr8	23250319	23250348	protein_coding	Nek3	intron	ENSMUSG00000031478	ProperStrand	16	1	-15.1632
chr2	59876583	59876661	protein_coding	Baz2b	intron	ENSMUSG00000026987	ProperStrand	70	chr5	31203593	31203638	protein_coding	Agbl5	intron	ENSMUSG00000029165	NonProperStrand	37	1	-12.6898
chr8	60904223	60904306	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	chr1	118452114	118452182	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	1	-8.0819
chr9	27324211	27324256	SINE	B1_Mm	Alu	chr9B1_Mm27324132	ProperStrand	1	chr9	65589541	65589557	protein_coding	Zfp609	intron	ENSMUSG00000040524	ProperStrand	12	1	-inf
chr17	39847223	39847250	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	143420893	143421026	protein_coding	Gm1977	intron	ENSMUSG00000079127	ProperStrand	8	2	-5.9593
chr3	86818889	86818976	LINE	Lx7	L1	chr3Lx786818849	NonProperStrand	1	chr3	86919892	86919918	protein_coding	Kirrel	intron	ENSMUSG00000041734	ProperStrand	52	1	-inf
chr17	39846580	39846660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	23078273	23078291	protein_coding	Kng1	intron	ENSMUSG00000022875	NonProperStrand	3	1	-4.3017
chr10	83488633	83488740	LINE	Lx8	L1	chr10Lx883488630	NonProperStrand	2	chr7	19637576	19637598	protein_coding	Sympk	intron	ENSMUSG00000023118	NonProperStrand	12	1	-inf
chr8	120673235	120673337	LTR	MTA_Mm	MaLR	chr8MTA_Mm120673123	NonProperStrand	10	chr8	120673339	120674068	LTR	RMER15	ERVL	chr8RMER15120673933	NonProperStrand	19	5	-20.7121
chr1	179533425	179533516	LTR	ORR1D2	MaLR	chr1ORR1D2179533419	ProperStrand	1	chr1	179532294	179532315	Low_complexity	AT_rich	Low_complexity	chr1AT_rich179532276	NonProperStrand	1	1	-inf
chr18	33762826	33762916	LTR	MLT1F1	MaLR	chr18MLT1F133762394	ProperStrand	1	chr18	33763161	33763261	LTR	MT2_Mm	ERVL	chr18MT2_Mm33762893	NonProperStrand	1	1	-inf
chr16	36717415	36717485	protein_coding-noncoding	Ildr1	utr5	ENSMUSG00000022900	ProperStrand	3	chr16	36711565	36717779	protein_coding	Ildr1	intron	ENSMUSG00000022900	ProperStrand	32	3	-inf
chr17	56165448	56165467	protein_coding	Sh3gl1	intron	ENSMUSG00000003200	ProperStrand	3	chr18	25369028	25369142	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	1	-18.5873
chr11	109011809	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	80648315	80648388	protein_coding	Dhx57	intron	ENSMUSG00000035051	ProperStrand	50	1	-6.4600
chr5	140207310	140207348	protein_coding	Micall2	intron	ENSMUSG00000036718	ProperStrand	59	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-7.8822
chr17	39843346	39843409	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr16	33729691	33729771	protein_coding	Heg1	intron	ENSMUSG00000075254	ProperStrand	40	1	-3.2866
chr17	39845801	39845903	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr6	28944007	28944037	lincRNA	Gm3294	intron	ENSMUSG00000092090	ProperStrand	1	1	-inf
chr16	15829895	15829942	protein_coding	Prkdc	intron	ENSMUSG00000022672	ProperStrand	42	chr19	8907273	8907317	protein_coding	Hnrnpul2	utr3	ENSMUSG00000071659	ProperStrand	40	1	-13.5631
chr18	56280851	56280951	LTR	MTE2b	MaLR	chr18MTE2b56280832	NonProperStrand	1	chr18	56280327	56280417	LTR	RMER19B	ERVK	chr18RMER19B56280001	NonProperStrand	1	1	-inf
chr5	66077895	66077943	protein_coding	Pds5a	intron	ENSMUSG00000029202	ProperStrand	49	chr9	86409844	86409896	protein_coding	Dopey1	intron	ENSMUSG00000034973	NonProperStrand	10	1	-16.0917
chr17	15498198	15498276	LINE	Lx9	L1	chr17Lx915498155	ProperStrand	5	chr4	132270077	132270148	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-15.9970
chr17	39847228	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	60022922	60023001	protein_coding	Srebf1	intron	ENSMUSG00000020538	ProperStrand	8	1	-3.3803
chr6	19036943	19037043	LINE	L1MB1	L1	chr6L1MB119036936	ProperStrand	1	chr6	19037077	19037167	LINE	Lx5	L1	chr6Lx519037049	ProperStrand	1	1	-inf
chr7	114949713	114949813	LINE	L1VL4	L1	chr7L1VL4114947637	ProperStrand	2	chr7	114952972	114953062	Simple_repeat	(TTC)n	Simple_repeat	chr7(TTC)n114952765	ProperStrand	3	2	-inf
chr15	85177749	85177768	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr5	74645423	74645452	protein_coding	Scfd2	intron	ENSMUSG00000062110	ProperStrand	53	1	-9.5527
chr17	39842998	39843023	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr11	109365861	109365961	protein_coding	Arsg	intron	ENSMUSG00000020604	ProperStrand	62	1	-5.3222
chr13	43266517	43266581	protein_coding	Tbc1d7	intron	ENSMUSG00000021368	ProperStrand	34	chr13	97190558	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.2385
chr9	123461839	123462103	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr15	77237721	77240053	protein_coding	Apol9a	intron	ENSMUSG00000068246	ProperStrand	7	2	-8.6448
chr11	53430633	53430717	protein_coding	Il4	utr5	ENSMUSG00000000869	ProperStrand	8	chr9	123461822	123461896	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr3	144517105	144517195	LINE	L1_Mus1	L1	chr3L1_Mus1144516441	ProperStrand	7	chr17	45571600	45571845	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	1	-15.7510
chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr7	109634828	109634895	protein_coding	Olfr544	intron	ENSMUSG00000043925	ProperStrand	5	1	-9.5722
chr17	39848145	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	48178884	48179008	protein_coding	Atg14	intron	ENSMUSG00000037526	NonProperStrand	12	1	-4.3503
chr3	31945631	31945721	protein_coding	Kcnmb2	intron	ENSMUSG00000037610	ProperStrand	7	chr6	48345813	48345913	protein_coding	Krba1	utr5	ENSMUSG00000042810	NonProperStrand	4	1	-inf
chr8	34899094	34899184	protein_coding	Rbpms	intron	ENSMUSG00000031586	ProperStrand	74	chr8	41971101	41971201	protein_coding	Slc7a2	intron	ENSMUSG00000031596	NonProperStrand	1	1	-inf
chr9	110281285	110281348	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr15	76070373	76070460	protein_coding	Parp10	intron	ENSMUSG00000063268	ProperStrand	64	1	-7.4343
chr6	99932584	99932694	LTR	MLT1D	MaLR	chr6MLT1D99932499	ProperStrand	1	chr6	99931028	99931057	LTR	MLT1F2	MaLR	chr6MLT1F299930863	ProperStrand	1	1	-inf
chr2	119627966	119628097	protein_coding	Tyro3	intron	ENSMUSG00000027298	ProperStrand	6	chr7	111454611	111454629	protein_coding	Trim12a	intron	ENSMUSG00000066258	ProperStrand	1	1	-inf
chr17	39847087	39847132	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	89571810	89571828	SINE	B4	B4	chr11B489571806	NonProperStrand	1	1	-inf
chrX	151049483	151049568	LTR	BGLII_B	ERVK	chrXBGLII_B151049318	ProperStrand	1	chrX	151049728	151049792	LTR	MYSERV6-int	ERVK	chrXMYSERV6-int151049743	ProperStrand	3	1	-inf
chr17	39847233	39847289	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	120812658	120812724	protein_coding-noncoding	Slc16a3	utr5	ENSMUSG00000025161	NonProperStrand	5	1	-4.3348
chr17	39847207	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	3656591	3656693	protein_coding-noncoding	Rps9	utr5	ENSMUSG00000006333	ProperStrand	5	1	-4.3348
chr15	59040272	59040431	Simple_repeat	(TCTA)n	Simple_repeat	chr15(TCTA)n59039967	NonProperStrand	18	chr15	59040457	59040552	Simple_repeat	(TCTA)n	Simple_repeat	chr15(TCTA)n59040416	NonProperStrand	13	10	-inf
chr14	101556881	101556968	LINE	L1_Mus3	L1	chr14L1_Mus3101551608	ProperStrand	2	chr15	101199083	101199113	protein_coding	Krt80	intron	ENSMUSG00000037185	NonProperStrand	51	1	-20.9863
chr5	146261141	146261199	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	41918132	41918204	SINE	B4A	B4	chr19B4A41918145	ProperStrand	2	1	-12.4657
chr4	117202582	117202643	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr1	181117633	181117684	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-11.7335
chr15	47288284	47288384	LINE	L1Md_F2	L1	chr15L1Md_F247288208	NonProperStrand	1	chr15	47288129	47288219	LINE	MusHAL1	L1	chr15MusHAL147287738	NonProperStrand	1	1	-inf
chr1	71652922	71652986	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	chr2	131919176	131919230	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-9.8716
chr17	39846481	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	6394572	6394660	LTR	RLTR17	ERVK	chr4RLTR176394326	ProperStrand	1	1	-inf
chr6	3201493	3201553	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	55050390	55050460	protein_coding-noncoding	Crhr2	utr3	ENSMUSG00000003476	NonProperStrand	14	1	-5.6737
chr16	78346108	78346210	protein_coding	Cxadr	intron	ENSMUSG00000022865	NonProperStrand	14	chr7	112842422	112842452	protein_coding	Dnhd1	exon	ENSMUSG00000030882	ProperStrand	238	1	-12.2221
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	46062149	46062268	SINE	B1_Mus2	Alu	chr9B1_Mus246062173	NonProperStrand	1	1	-inf
chr5	151692482	151692572	LTR	RMER17C	ERVK	chr5RMER17C151692492	ProperStrand	1	chr5	151692038	151692138	SINE	B1_Mm	Alu	chr5B1_Mm151692017	NonProperStrand	1	1	-inf
chr16	44718676	44718755	DNA	Charlie12	MER1_type	chr16Charlie1244718662	NonProperStrand	1	chr17	39847160	39847235	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39848098	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	34310857	34310911	SINE	B4A	B4	chr14B4A34310753	ProperStrand	11	1	-4.5229
chr16	35818968	35819048	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	chr8	112913864	112913891	protein_coding	Hydin	intron	ENSMUSG00000059854	NonProperStrand	13	1	-12.8270
chr2	3460806	3460896	LTR	ORR1B1	MaLR	chr2ORR1B13460768	NonProperStrand	1	chr2	3460678	3460778	LTR	ORR1B2	MaLR	chr2ORR1B23460642	NonProperStrand	1	1	-inf
chr13	38217451	38220726	LINE	L1MB3	L1	chr13L1MB338217034	ProperStrand	1	chr5	129266442	129266488	protein_coding	Rimbp2	utr3	ENSMUSG00000029420	ProperStrand	9	1	-inf
chr6	53057311	53057401	LTR	MLT1J	MaLR	chr6MLT1J53057332	ProperStrand	1	chr6	53057094	53057194	SINE	B3	B2	chr6B353057051	NonProperStrand	1	1	-inf
chr7	55600937	55601027	LINE	Lx3C	L1	chr7Lx3C55597753	ProperStrand	1	chr17	70963688	70963788	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr1	26308195	26308285	LTR	BGLII	ERVK	chr1BGLII26307922	ProperStrand	1	chr1	26308514	26308614	LTR	RMER3D-int	ERVK	chr1RMER3D-int26308438	ProperStrand	1	1	-inf
chr1	72829881	72829948	Simple_repeat	(GAA)n	Simple_repeat	chr1(GAA)n72829811	ProperStrand	8	chr3	86141393	86141741	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-15.2674
chr14	60801252	60801334	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr12	82425230	82425300	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	1	-8.2864
chr9	20936520	20936610	SINE	B1_Mus1	Alu	chr9B1_Mus120936504	ProperStrand	1	chr9	20936711	20936811	SINE	B2_Mm1t	B2	chr9B2_Mm1t20936652	NonProperStrand	1	1	-inf
chr9	78453323	78453413	LTR	MTEa-int	MaLR	chr9MTEa-int78452282	ProperStrand	1	chr9	78453551	78453651	LTR	MTEa	MaLR	chr9MTEa78453484	ProperStrand	1	1	-inf
chr14	9999372	9999462	DNA	URR1B	MER1_type	chr14URR1B9999345	ProperStrand	1	chr14	9998834	9998934	Other	RMER1B	Other	chr14RMER1B9998611	ProperStrand	1	1	-inf
chr3	147154710	147154800	LINE	Lx2	L1	chr3Lx2147151086	ProperStrand	1	chr3	147154986	147155086	LINE	Lx3_Mus	L1	chr3Lx3_Mus147154910	ProperStrand	1	1	-inf
chr10	9786875	9786933	LINE	Lx3C	L1	chr10Lx3C9786809	ProperStrand	1	chr5	146261246	146261269	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-inf
chrX	151882602	151882700	LINE	L1Md_F2	L1	chrXL1Md_F2151879562	ProperStrand	12	chr18	37965139	37965184	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	1	-14.0544
chr3	106234768	106234868	LTR	RLTR13A3	ERVK	chr3RLTR13A3106234043	NonProperStrand	1	chr3	106235383	106235473	LTR	RMER17D	ERVK	chr3RMER17D106235095	NonProperStrand	1	1	-inf
chr9	106005173	106005253	SINE	PB1D9	Alu	chr9PB1D9106005193	NonProperStrand	1	chr9	106005082	106005113	Simple_repeat	(CAGAGA)n	Simple_repeat	chr9(CAGAGA)n106005022	NonProperStrand	1	1	-inf
chr17	52656813	52656903	LINE	L1Md_F3	L1	chr17L1Md_F352656190	NonProperStrand	1	chr17	52656912	52657012	LINE	L1_Mus1	L1	chr17L1_Mus152656905	NonProperStrand	1	1	-inf
chr6	3201470	3201540	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	33890862	33890917	LTR	ORR1D1-int	MaLR	chr8ORR1D1-int33890552	NonProperStrand	1	1	-inf
chr14	120281784	120281820	LINE	L1MA7	L1	chr14L1MA7120281608	NonProperStrand	2	chr1	191082365	191082479	protein_coding	Kcnk2	intron	ENSMUSG00000037624	NonProperStrand	64	1	-19.4042
chr4	155214933	155215391	protein_coding-noncoding	Mxra8	utr5	ENSMUSG00000029070	NonProperStrand	8	chr4	155214828	155215491	protein_coding	Mxra8	exon	ENSMUSG00000029070	NonProperStrand	30	7	-21.0251
chr11	46531453	46531543	LTR	MTB_Mm	MaLR	chr11MTB_Mm46531247	ProperStrand	1	chr11	46531680	46531780	Low_complexity	T-rich	Low_complexity	chr11T-rich46531612	ProperStrand	1	1	-inf
chr14	103173517	103173570	LINE	L1_Mus3	L1	chr14L1_Mus3103171409	NonProperStrand	3	chr17	39846375	39846433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr12	99273839	99273909	LTR	RLTR21	ERVK	chr12RLTR2199273842	ProperStrand	2	chr12	99274213	99274268	LTR	RLTR21	ERVK	chr12RLTR2199273952	ProperStrand	21	2	-inf
chr3	108386659	108387290	LTR	ORR1D1	MaLR	chr3ORR1D1108386557	ProperStrand	7	chr3	108387340	108387643	SINE	PB1D10	Alu	chr3PB1D10108387336	NonProperStrand	2	2	-inf
chr11	10564076	10564166	LINE	Lx4B	L1	chr11Lx4B10563936	NonProperStrand	1	chr11	10563854	10563954	SINE	B2_Mm1a	B2	chr11B2_Mm1a10563749	NonProperStrand	1	1	-inf
chr17	39847844	39847961	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	107261944	107262425	SINE	MIR	MIR	chr9MIR107261853	ProperStrand	1	1	-inf
chr4	91258154	91258254	LTR	ORR1E	MaLR	chr4ORR1E91257998	NonProperStrand	2	chr6	89428604	89428694	protein_coding	Chchd6	intron	ENSMUSG00000030086	ProperStrand	188	1	-17.2517
chr15	59566764	59566813	SINE	MIRm	MIR	chr15MIRm59566736	ProperStrand	1	chr9	56223574	56223676	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-inf
chr2	29630308	29634829	protein_coding-noncoding	Trub2	utr3	ENSMUSG00000039826	NonProperStrand	11	chr2	29630195	29635797	protein_coding	Trub2	intron	ENSMUSG00000039826	NonProperStrand	115	7	-inf
chr2	10034500	10034598	protein_coding	Itih2	intron	ENSMUSG00000037254	ProperStrand	40	chr15	8149787	8149803	protein_coding	2410089E03Rik	intron	ENSMUSG00000039801	ProperStrand	47	1	-13.3359
chr8	47979809	47979840	DNA	URR1B	MER1_type	chr8URR1B47979780	ProperStrand	2	chr2	73012886	73012907	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	2	-inf
chr4	137599750	137599809	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr7	138842006	138842099	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-4.8213
chrX	160588991	160589007	protein_coding	Ace2	intron	ENSMUSG00000015405	NonProperStrand	17	chr8	121815501	121815635	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	1	-11.1970
chr7	97047769	97047808	protein_coding	Ccdc81	intron	ENSMUSG00000039391	NonProperStrand	12	chr11	85536997	85537060	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-12.7647
chr9	40804747	40804837	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr9	108515017	108515148	protein_coding	Arih2	intron	ENSMUSG00000064145	NonProperStrand	62	1	-7.3741
chr3	133340006	133340071	LINE	L1MA4	L1	chr3L1MA4133339868	ProperStrand	1	chr2	5370057	5370112	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr5	66352547	66352661	protein_coding	Chrna9	intron	ENSMUSG00000029205	NonProperStrand	122	chr4	83329338	83329376	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-9.3273
chr5	45699960	45699997	LINE	L1Md_T	L1	chr5L1Md_T45699065	ProperStrand	1	chr12	72784310	72784401	SINE	B1_Mm	Alu	chr12B1_Mm72784298	ProperStrand	4	1	-inf
chr17	38114239	38114339	LTR	MYSERV-int	ERVK	chr17MYSERV-int38113638	NonProperStrand	1	chr17	38114426	38114516	SINE	B1_Mus1	Alu	chr17B1_Mus138114440	NonProperStrand	1	1	-inf
chr19	36891828	36891969	SINE	B2_Mm2	B2	chr19B2_Mm236891849	ProperStrand	2	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	1	-19.5186
chr12	4173514	4173577	protein_coding	Adcy3	exon	ENSMUSG00000020654	ProperStrand	36	chr16	11399772	11400826	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	1	-12.7447
chr17	39847804	39847847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	157334631	157334731	SINE	B2_Mm2	B2	chr1B2_Mm2157334654	ProperStrand	1	1	-inf
chr10	122565825	122565915	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr7	103550788	103550888	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-12.5158
chr5	113942067	113942142	protein_coding	Wscd2	intron	ENSMUSG00000063430	NonProperStrand	42	chr13	81575008	81575088	protein_coding	Gpr98	intron	ENSMUSG00000069170	ProperStrand	77	1	-12.2409
chr11	77295071	77295218	protein_coding	Ankrd13b	intron	ENSMUSG00000037907	NonProperStrand	4	chr12	110691548	110691566	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	3	-20.4946
chr15	101194816	101194926	protein_coding	Krt80	utr5	ENSMUSG00000037185	NonProperStrand	51	chr9	118674951	118674985	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.2915
chr6	3201455	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr18	23957150	23960018	protein_coding	Mapre2	intron	ENSMUSG00000024277	ProperStrand	28	1	-4.3080
chr13	112003217	112003307	SINE	B2_Mm2	B2	chr13B2_Mm2112003144	ProperStrand	1	chr13	112003350	112003450	Simple_repeat	(GAAA)n	Simple_repeat	chr13(GAAA)n112003324	ProperStrand	1	1	-inf
chr7	28924616	28924712	protein_coding-noncoding	9530053A07Rik	utr5	ENSMUSG00000078776	NonProperStrand	6	chr11	36570624	36570643	protein_coding	Odz2	intron	ENSMUSG00000049336	NonProperStrand	36	1	-17.9499
chr1	137605241	137605331	LTR	ORR1B1	MaLR	chr1ORR1B1137605226	ProperStrand	1	chr1	137605097	137605197	LTR	RLTR16	ERVK	chr1RLTR16137604790	ProperStrand	1	1	-inf
chr16	44488641	44488657	protein_coding	Boc	exon	ENSMUSG00000022687	ProperStrand	39	chr18	77780107	77780150	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-10.6761
chr11	107043566	107043595	protein_coding	Nol11	intron	ENSMUSG00000018433	ProperStrand	34	chr13	97190546	97190578	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.2385
chr4	143420671	143420742	LINE	L1Md_F2	L1	chr4L1Md_F2143417397	ProperStrand	9	chr2	69065159	69065240	protein_coding	G6pc2	utr3	ENSMUSG00000005232	ProperStrand	5	1	-inf
chr15	77205710	77205791	LTR	RodERV21-int	ERV1	chr15RodERV21-int77204291	NonProperStrand	6	chr15	77213406	77213445	Other	RMER1A	Other	chr15RMER1A77213197	NonProperStrand	3	1	-inf
chr7	136340132	136340232	LINE	L1_Mus3	L1	chr7L1_Mus3136340137	NonProperStrand	1	chr7	136340015	136340105	LINE	Lx	L1	chr7Lx136339712	NonProperStrand	1	1	-inf
chr17	39847197	39847241	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	65582118	65582205	LTR	ORR1E-int	MaLR	chr18ORR1E-int65581952	NonProperStrand	3	1	-5.4882
chr4	155174933	155174992	SINE	B3	B2	chr4B3155174866	ProperStrand	2	chr4	155179685	155179778	protein_coding	Mrpl20	intron	ENSMUSG00000029066	NonProperStrand	18	2	-inf
chr2	53138465	53138513	LTR	MLT1C	MaLR	chr2MLT1C53138461	ProperStrand	1	chr12	80836976	80837053	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-inf
chr4	103993587	103993677	protein_coding	Dab1	intron	ENSMUSG00000028519	NonProperStrand	38	chr4	104196246	104196348	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	107	1	-11.7819
chr3	127842127	127842167	LINE	L1Md_T	L1	chr3L1Md_T127840910	ProperStrand	1	chr9	107764281	107764356	protein_coding	Rbm6	intron	ENSMUSG00000032582	ProperStrand	49	1	-inf
chr8	104934154	104934244	LINE	Lx5	L1	chr8Lx5104932938	ProperStrand	1	chr8	94872104	94872204	protein_coding	4933436C20Rik	intron	ENSMUSG00000031736	ProperStrand	3	1	-inf
chr8	104423841	104423938	LINE	L1Md_F2	L1	chr8L1Md_F2104423701	ProperStrand	1	chr8	104425170	104425205	LINE	L1Md_F2	L1	chr8L1Md_F2104425044	NonProperStrand	1	1	-inf
chr6	28566759	28566824	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr6	125181036	125181113	protein_coding	Tapbpl	intron	ENSMUSG00000038213	ProperStrand	61	1	-6.5003
chr9	123462015	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	118487271	118487368	protein_coding	Rbfox3	intron	ENSMUSG00000025576	NonProperStrand	19	2	-5.4805
chr17	39847207	39847417	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	132212044	132276825	protein_coding	Eya3	intron	ENSMUSG00000028886	ProperStrand	7	2	-6.4010
chr11	33487979	33488007	LTR	ORR1B1	MaLR	chr11ORR1B133487938	NonProperStrand	1	chr2	103631413	103631451	protein_coding	Caprin1	intron	ENSMUSG00000027184	NonProperStrand	22	1	-inf
chr17	39846910	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	106248030	106248711	protein_coding	Icam2	intron	ENSMUSG00000001029	NonProperStrand	12	2	-3.1058
chr7	114228282	114228375	LINE	L1Md_F2	L1	chr7L1Md_F2114227702	NonProperStrand	1	chr17	8379757	8379806	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	ProperStrand	10	1	-inf
chr8	41114420	41114520	LINE	Lx2	L1	chr8Lx241114365	ProperStrand	1	chr8	41114752	41114842	LTR	MTE-int	MaLR	chr8MTE-int41114735	ProperStrand	1	1	-inf
chr17	39848489	39848554	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr10	85489699	85489754	protein_coding	Fbxo7	intron	ENSMUSG00000001786	ProperStrand	12	1	-4.6162
chr10	51234481	51234499	LINE	Lx2B	L1	chr10Lx2B51233822	NonProperStrand	5	chr8	13377360	13377480	protein_coding	Tfdp1	utr3	ENSMUSG00000038482	ProperStrand	232	1	-14.4823
chr10	81357782	81357882	LINE	L1Md_F2	L1	chr10L1Md_F281353285	NonProperStrand	1	chr17	39846967	39847025	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr16	93583478	93583546	LTR	MTA_Mm	MaLR	chr16MTA_Mm93583297	NonProperStrand	4	chr5	30953046	30953106	protein_coding	4930471M23Rik	intron	ENSMUSG00000029175	NonProperStrand	19	1	-20.0437
chr2	5379274	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr15	7962503	7962596	protein_coding	Wdr70	intron	ENSMUSG00000039828	ProperStrand	93	1	-3.7213
chr9	110281293	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr3	152458920	152458998	protein_coding	Pigk	intron	ENSMUSG00000039047	ProperStrand	95	1	-6.6504
chr5	41817221	41817255	LINE	Lx3C	L1	chr5Lx3C41815978	ProperStrand	22	chrX	93760900	93761018	protein_coding	Heph	intron	ENSMUSG00000031209	NonProperStrand	8	1	-18.3441
chr5	31072590	31072661	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr19	47406794	47406820	protein_coding	Sh3pxd2a	intron	ENSMUSG00000053617	ProperStrand	170	1	-7.6621
chr2	158743429	158743469	LTR	MLT1H1	MaLR	chr2MLT1H1158743121	NonProperStrand	2	chr1	72853535	72853631	SINE	B1_Mus1	Alu	chr1B1_Mus172853547	ProperStrand	2	2	-inf
chr6	3201455	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	73386921	73386953	protein_coding	Lrrk1	intron	ENSMUSG00000015133	NonProperStrand	32	1	-4.0529
chr7	123214794	123214894	LTR	RLTR13C1	ERVK	chr7RLTR13C1123214678	NonProperStrand	1	chr7	123215143	123215233	LTR	RLTR13C1	ERVK	chr7RLTR13C1123214889	NonProperStrand	1	1	-inf
chrX	74302498	74302596	LINE	Lx6	L1	chrXLx674302179	ProperStrand	1	chr9	123461931	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	83365668	83365707	LTR	RLTR10B	ERVK	chr11RLTR10B83365626	NonProperStrand	3	chr11	83339369	83339418	protein_coding	Ccl5	utr3	ENSMUSG00000035042	NonProperStrand	1	1	-inf
chr9	43747188	43747288	LINE	HAL1-3A_ME	L1	chr9HAL1-3A_ME43747181	ProperStrand	4	chr9	43747077	43747167	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n43747033	ProperStrand	10	4	-inf
chr7	16043181	16043244	LINE	L1_Mur1	L1	chr7L1_Mur116043055	NonProperStrand	6	chr17	39847252	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.9545
chr8	43304527	43306858	DNA	URR1A	MER1_type	chr8URR1A43304496	ProperStrand	1	chr17	39846776	39846801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	64125294	64125394	antisense	Gm13748	.	ENSMUSG00000086836	ProperStrand	1	chr1	64125103	64125193	protein_coding	Klf7	intron	ENSMUSG00000025959	NonProperStrand	1	1	-inf
chr7	5097392	5097594	LINE	L1_Mur2	L1	chr7L1_Mur25096984	ProperStrand	3	chr6	49236499	49236552	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-15.6843
chr17	39843819	39843909	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr19	59290331	59290383	LTR	RMER20B	ERVK	chr19RMER20B59290136	NonProperStrand	3	2	-15.3431
chr17	39846950	39846993	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	69742828	69742906	SINE	B4	B4	chr11B469742814	NonProperStrand	1	1	-inf
chr9	123461876	123461964	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	122957534	122957577	protein_coding	Tgm4	intron	ENSMUSG00000025787	ProperStrand	19	1	-3.1531
chr2	5379271	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	122559755	122560661	protein_coding	Ccdc63	intron	ENSMUSG00000043036	ProperStrand	6	1	-9.2270
chrX	151803482	151803506	LINE	Lx8	L1	chrXLx8151803462	ProperStrand	13	chr9	123462124	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr13	47085593	47085662	LTR	MLT1E2	MaLR	chr13MLT1E247085607	NonProperStrand	2	chr8	123266569	123266651	protein_coding-noncoding	Irf8	utr5	ENSMUSG00000041515	ProperStrand	2	1	-19.8939
chr8	69363595	69363676	LINE	L1Md_F2	L1	chr8L1Md_F269363467	ProperStrand	1	chr9	123461871	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	46084610	46084700	protein_coding-noncoding	Zfp259	utr5	ENSMUSG00000032078	ProperStrand	1	chr9	46084745	46084845	protein_coding	Zfp259	intron	ENSMUSG00000032078	ProperStrand	9	1	-inf
chr11	59475620	59475710	protein_coding	Mprip	intron	ENSMUSG00000005417	NonProperStrand	30	chr9	108617414	108644036	protein_coding	Prkar2a	intron	ENSMUSG00000032601	NonProperStrand	68	1	-13.1725
chr4	129607694	129607759	SINE	B1F1	Alu	chr4B1F1129607633	NonProperStrand	1	chr4	129608257	129608332	SINE	B1_Mm	Alu	chr4B1_Mm129608249	NonProperStrand	6	1	-inf
chr9	107773736	107774610	protein_coding	Rbm6	intron	ENSMUSG00000032582	ProperStrand	49	chr6	144355421	144355473	protein_coding	Sox5	intron	ENSMUSG00000041540	NonProperStrand	32	1	-13.7027
chrX	128003868	128003958	LINE	L1Md_A	L1	chrXL1Md_A128003829	NonProperStrand	1	chrX	128003752	128003852	LTR	MTE2a	MaLR	chrXMTE2a128003587	NonProperStrand	1	1	-inf
chr17	84785207	84785262	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	chr7	133039656	133039684	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.2858
chr11	101192088	101192170	protein_coding	Aoc3	utr5	ENSMUSG00000019326	NonProperStrand	24	chr7	99479284	99479363	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-9.2705
chr12	105835576	105835677	SINE	B4	B4	chr12B4105835501	ProperStrand	2	chr3	103765715	103765774	protein_coding	Rsbn1	intron	ENSMUSG00000044098	NonProperStrand	18	1	-21.0482
chrX	100274217	100274329	LINE	L1ME1	L1	chrXL1ME1100274008	NonProperStrand	1	chr4	129717679	129717704	antisense	Gm12963	.	ENSMUSG00000085517	ProperStrand	22	1	-inf
chr17	39847187	39847232	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	83109604	83109639	protein_coding	1700003E16Rik	intron	ENSMUSG00000030030	ProperStrand	3	1	-5.4882
chr17	39847471	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	36857878	36857944	LTR	MTA_Mm	MaLR	chr17MTA_Mm36857894	NonProperStrand	1	1	-inf
chr16	4418427	4418474	protein_coding	Adcy9	exon	ENSMUSG00000005580	ProperStrand	55	chr3	8531694	8531751	protein_coding	Stmn2	intron	ENSMUSG00000027500	ProperStrand	66	1	-12.0056
chr6	145066846	145066906	protein_coding	Lrmp	intron	ENSMUSG00000030263	NonProperStrand	6	chr13	97190556	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr12	65557091	65557191	DNA	RCHARR1	MER1_type	chr12RCHARR165556910	NonProperStrand	1	chr12	65557406	65557496	Simple_repeat	(GAAA)n	Simple_repeat	chr12(GAAA)n65557427	NonProperStrand	1	1	-inf
chr3	88908739	88908764	LTR	MER21B	ERV1	chr3MER21B88908734	ProperStrand	1	chr9	123461802	123461841	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	80109541	80109631	LINE	Lx	L1	chr12Lx80109310	NonProperStrand	2	chr17	39847649	39847749	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr18	77803177	77803244	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr18	77810472	77810549	protein_coding	8030462N17Rik	intron	ENSMUSG00000047466	NonProperStrand	40	1	-10.6249
chr17	24162721	24162799	LTR	RLTR14	ERV1	chr17RLTR1424162488	NonProperStrand	1	chr17	24167222	24167290	LTR	RLTR19	ERVK	chr17RLTR1924167220	ProperStrand	1	1	-inf
chr14	65209856	65209916	lincRNA	A930011O12Rik	exon	ENSMUSG00000091456	NonProperStrand	1	chr2	165277244	165277472	protein_coding	Slc13a3	intron	ENSMUSG00000018459	ProperStrand	44	1	-inf
chr14	30988034	30988124	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr17	30088527	30088627	protein_coding	Mdga1	intron	ENSMUSG00000043557	NonProperStrand	98	1	-8.7594
chr3	122615313	122615387	lincRNA	4933405D12Rik	intron	ENSMUSG00000086397	ProperStrand	31	chr11	33335131	33335196	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-8.7683
chr17	39847277	39847327	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	53589275	53589379	protein_coding	Irf1	intron	ENSMUSG00000018899	ProperStrand	3	1	-5.4882
chr7	130751222	130751283	LINE	L1Md_A	L1	chr7L1Md_A130749226	ProperStrand	6	chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr18	31588404	31588504	LINE	Lx6	L1	chr18Lx631587581	NonProperStrand	1	chr18	31588775	31588865	LINE	Lx8	L1	chr18Lx831588775	ProperStrand	1	1	-inf
chr17	39847611	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	142241101	142241124	LTR	MT2A	ERVL	chr3MT2A142241049	NonProperStrand	1	1	-inf
chr14	67676581	67676632	protein_coding	Ppp2r2a	intron	ENSMUSG00000022052	ProperStrand	54	chr10	80417214	80417317	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	11	1	-15.6981
chr13	29976304	29976404	LTR	IAPEz-int	ERVK	chr13IAPEz-int29975009	ProperStrand	54	chr13	29978327	29978417	LTR	IAPLTR1a_Mm	ERVK	chr13IAPLTR1a_Mm29978290	ProperStrand	4	1	-18.0559
chr19	32762968	32762999	protein_coding	Atad1	intron	ENSMUSG00000013662	NonProperStrand	33	chr1	78479528	78479592	protein_coding	Farsb	intron	ENSMUSG00000026245	ProperStrand	84	1	-12.5546
chr10	9893025	9893074	LINE	L1VL4	L1	chr10L1VL49892536	NonProperStrand	3	chr10	9894685	9894734	LINE	L1VL4	L1	chr10L1VL49893925	NonProperStrand	1	1	-inf
chr12	104692995	104693085	protein_coding	Ifi27l2b	intron	ENSMUSG00000021208	ProperStrand	25	chr2	156550945	156551045	protein_coding	Dlgap4	intron	ENSMUSG00000061689	ProperStrand	127	1	-12.2893
chr17	39848140	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	23852323	23852421	protein_coding	Kcnh2	intron	ENSMUSG00000038319	NonProperStrand	16	1	-3.7913
chr7	135695100	135695163	SINE	B3	B2	chr7B3135694965	NonProperStrand	1	chr1	92035398	92035451	protein_coding	Iqca	intron	ENSMUSG00000026301	ProperStrand	175	1	-inf
chr14	103092029	103092077	LINE	L1MC3	L1	chr14L1MC3103090914	NonProperStrand	11	chr17	39845857	39845917	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-5.1180
chr2	22744853	22744889	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	113901594	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-5.2752
chr15	89159997	89160173	SINE	B2_Mm1a	B2	chr15B2_Mm1a89160036	NonProperStrand	1	chr15	89160429	89160507	SINE	B2_Mm2	B2	chr15B2_Mm289160327	ProperStrand	1	1	-inf
chr2	22744850	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	44032437	44032522	protein_coding	Clta	intron	ENSMUSG00000028478	ProperStrand	49	1	-7.2114
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	70350197	70350278	protein_coding	Klhdc1	intron	ENSMUSG00000051890	ProperStrand	2	1	-5.3533
chr14	63123967	63124067	LINE	L1Md_F2	L1	chr14L1Md_F263123617	ProperStrand	7	chr14	63131804	63131894	SINE	PB1D7	Alu	chr14PB1D763131768	NonProperStrand	2	1	-21.4874
chr17	39847477	39847542	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	114005900	114005919	protein_coding	Aqr	intron	ENSMUSG00000040383	NonProperStrand	1	1	-inf
chr2	178039859	178039951	protein_coding	Phactr3	intron	ENSMUSG00000027525	ProperStrand	26	chr2	60100525	60100543	protein_coding	Cd302	intron	ENSMUSG00000060703	ProperStrand	10	1	-17.3899
chr2	91832131	91832176	protein_coding	Creb3l1	exon	ENSMUSG00000027230	NonProperStrand	21	chr6	65800469	65800554	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-11.6853
chr16	64852533	64852623	protein_coding-noncoding	Cggbp1	utr5	ENSMUSG00000054604	ProperStrand	3	chr16	64852647	64852747	protein_coding	Cggbp1	utr5	ENSMUSG00000054604	ProperStrand	13	3	-inf
chr2	122245355	122245445	LTR	MERVL_2A-int	ERVL	chr2MERVL_2A-int122244972	ProperStrand	4	chr2	122245456	122245556	LTR	MERVL_2A-int	ERVL	chr2MERVL_2A-int122245450	ProperStrand	4	4	-inf
chr12	41376809	41376868	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	chr3	51259181	51259250	protein_coding	Naa15	intron	ENSMUSG00000063273	NonProperStrand	11	1	-12.1016
chrX	150997189	150997232	LINE	L1Md_F2	L1	chrXL1Md_F2150996487	NonProperStrand	1	chr17	39846703	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	185381817	185381886	LINE	Lx	L1	chr1Lx185381742	ProperStrand	2	chr5	73050361	73050417	protein_coding	Nipal1	intron	ENSMUSG00000067219	NonProperStrand	6	1	-inf
chr17	39847181	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	135321009	135321028	protein_coding	Myom3	intron	ENSMUSG00000037139	ProperStrand	3	1	-5.4882
chr9	38219639	38219655	LTR	MMETn-int	ERVK	chr9MMETn-int38217388	ProperStrand	1	chr19	4531367	4531455	protein_coding	Pcx	intron	ENSMUSG00000024892	ProperStrand	54	1	-inf
chr4	15357810	15357900	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n15357809	NonProperStrand	1	chr12	102663884	102663984	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-inf
chr13	55568256	55569799	protein_coding	Prr7	intron	ENSMUSG00000034686	NonProperStrand	61	chr13	55556173	55564567	protein_coding	Grk6	intron	ENSMUSG00000074886	NonProperStrand	87	8	-21.0966
chr8	114597034	114597124	SINE	B4	B4	chr8B4114597008	NonProperStrand	1	chr8	114595246	114595346	SINE	ID_B1	B4	chr8ID_B1114595228	ProperStrand	1	1	-inf
chr5	146261279	146261300	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr14	7908622	7908653	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-5.4530
chr10	75002045	75002069	LTR	RMER5	ERV1	chr10RMER575001858	NonProperStrand	1	chr17	39847701	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	16751981	16752071	LINE	Lx7	L1	chr17Lx716751802	NonProperStrand	1	chr17	16751634	16751734	LTR	RLTR16	ERVK	chr17RLTR1616751442	ProperStrand	1	1	-inf
chr2	180256399	180256489	protein_coding	Ntsr1	intron	ENSMUSG00000027568	NonProperStrand	24	chr7	133031749	133031849	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-6.9960
chr17	84716677	84722709	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	chr13	58392443	58393211	protein_coding	Kif27	exon	ENSMUSG00000060176	ProperStrand	75	1	-9.5569
chr9	77542040	77542130	LINE	Lx8	L1	chr9Lx877541859	ProperStrand	1	chr9	77531834	77531934	LTR	MTD	MaLR	chr9MTD77531627	ProperStrand	1	1	-inf
chr19	16142350	16142392	LINE	L1MD	L1	chr19L1MD16142078	NonProperStrand	1	chr2	38531048	38531160	processed_transcript	Gm13587	.	ENSMUSG00000087062	ProperStrand	12	1	-inf
chr17	39847651	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	101316400	101316485	protein_coding	Ifi35	intron	ENSMUSG00000010358	ProperStrand	3	1	-4.3512
chrX	52546435	52546471	LINE	L1VL4	L1	chrXL1VL452546309	NonProperStrand	2	chr17	39848099	39848120	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr7	100838867	100838910	DNA	BLACKJACK	AcHobo	chr7BLACKJACK100838298	ProperStrand	10	chr17	39843754	39843818	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-6.4551
chr12	55064883	55064930	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr3	105785454	105785547	protein_coding	Ovgp1	intron	ENSMUSG00000074340	NonProperStrand	14	1	-13.2990
chr6	48439217	48439234	protein_coding	Sspo	intron	ENSMUSG00000029797	NonProperStrand	4	chr9	21489352	21489495	protein_coding	Smarca4	intron	ENSMUSG00000032187	ProperStrand	82	1	-17.1150
chr11	77425345	77425388	LINE	L1MC5	L1	chr11L1MC577425258	NonProperStrand	1	chr17	39847767	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	56327380	56327480	LINE	Lx7	L1	chr3Lx756326946	NonProperStrand	1	chr3	56327671	56327761	LTR	RMER17C	ERVK	chr3RMER17C56327523	ProperStrand	1	1	-inf
chr17	39847366	39847417	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	117145058	117145082	SINE	B3A	B2	chr5B3A117144967	NonProperStrand	1	1	-inf
chr10	128090163	128090241	LTR	MT2B	ERVL	chr10MT2B128090135	ProperStrand	2	chr17	39847737	39847959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr17	39843850	39843906	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr14	57670588	57670658	protein_coding	Gja3	intron	ENSMUSG00000048582	NonProperStrand	2	1	-10.2298
chr5	146261174	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	89358525	89358576	protein_coding	Shank3	intron	ENSMUSG00000022623	ProperStrand	86	1	-4.3712
chr1	136280475	136280568	SINE	B2_Mm1t	B2	chr1B2_Mm1t136280466	ProperStrand	3	chr1	136277219	136277268	SINE	ID_B1	B4	chr1ID_B1136277175	NonProperStrand	1	1	-inf
chr2	27146380	27146480	protein_coding	Vav2	intron	ENSMUSG00000009621	ProperStrand	38	chr18	64130447	64130537	protein_coding	Wdr7	intron	ENSMUSG00000040560	NonProperStrand	9	1	-16.8827
chr3	88101556	88101698	protein_coding	Cct3	intron	ENSMUSG00000001416	ProperStrand	26	chr7	19696522	19696582	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-13.3502
chr17	39846667	39846759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	73164061	73164080	SINE	ID_B1	B4	chr8ID_B173163954	ProperStrand	2	1	-5.3533
chr11	51433516	51433606	protein_coding-noncoding	Nhp2	utr5	ENSMUSG00000001056	NonProperStrand	1	chr11	51433381	51433481	protein_coding	Nhp2	exon	ENSMUSG00000001056	NonProperStrand	1	1	-inf
chr9	107963556	107963677	protein_coding	Rnf123	intron	ENSMUSG00000041528	NonProperStrand	29	chr18	3287142	3287162	protein_coding	Crem	intron	ENSMUSG00000063889	NonProperStrand	5	1	-18.6726
chr4	43492777	43492844	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr8	88537853	88537938	protein_coding	Phkb	intron	ENSMUSG00000036879	ProperStrand	35	1	-8.1716
chr11	60710313	60710413	SINE	B1_Mur3	Alu	chr11B1_Mur360710289	ProperStrand	8	chr11	60710064	60710313	SINE	B3	B2	chr11B360710047	NonProperStrand	5	5	-inf
chr2	130872946	130873036	SINE	B3A	B2	chr2B3A130872947	NonProperStrand	3	chr3	29407243	29407343	protein_coding	Egfem1	intron	ENSMUSG00000063600	NonProperStrand	15	1	-21.4444
chr18	85866603	85866703	LTR	RMER16	ERVK	chr18RMER1685866436	NonProperStrand	1	chr18	85866777	85866867	LTR	RMER19C	ERVK	chr18RMER19C85866744	NonProperStrand	2	1	-inf
chr17	39846747	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	94537329	94540538	protein_coding	Eda2r	intron	ENSMUSG00000034457	ProperStrand	8	2	-4.2675
chr12	94739797	94739887	LINE	L1MC	L1	chr12L1MC94739815	NonProperStrand	1	chr12	94740049	94740149	SINE	B3A	B2	chr12B3A94740031	NonProperStrand	1	1	-inf
chr17	39845958	39846009	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	71807427	71807475	LTR	RLTR16	ERVK	chr2RLTR1671807279	ProperStrand	1	1	-inf
chr7	12843029	12843160	LINE	L1_Mus1	L1	chr7L1_Mus112841149	NonProperStrand	2	chr7	66543632	66543653	protein_coding	Ube3a	intron	ENSMUSG00000025326	NonProperStrand	2	1	-19.8939
chr1	4859677	4859745	protein_coding	Lypla1	intron	ENSMUSG00000025903	ProperStrand	29	chr6	71882607	71882693	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-11.9708
chr17	39847847	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	110614672	110614718	Simple_repeat	(GGAAA)n	Simple_repeat	chr7(GGAAA)n110614665	NonProperStrand	1	1	-inf
chr7	112849864	112849933	protein_coding	Dnhd1	intron	ENSMUSG00000030882	NonProperStrand	3	chr9	110281285	110281338	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-13.9200
chr4	8423080	8423170	LTR	MLT1K	MaLR	chr4MLT1K8422842	NonProperStrand	1	chr4	8423225	8423325	LTR	ORR1C2	MaLR	chr4ORR1C28423157	ProperStrand	1	1	-inf
chr12	72223522	72236600	protein_coding	Timm9	intron	ENSMUSG00000021079	ProperStrand	11	chr7	109521691	109521719	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	2	-inf
chr17	71069811	71069857	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	62963277	62963342	protein_coding	Pmp22	intron	ENSMUSG00000018217	ProperStrand	4	1	-11.8544
chr5	134500976	134501066	LINE	L1_Mm	L1	chr5L1_Mm134500957	ProperStrand	10	chr5	134500867	134500967	SINE	B3A	B2	chr5B3A134500746	NonProperStrand	3	3	-inf
chr19	41846220	41846307	protein_coding	Arhgap19	intron	ENSMUSG00000025154	ProperStrand	28	chr7	111076190	111076226	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-12.7278
chr6	7896320	7896410	LTR	RLTR12B	ERVK	chr6RLTR12B7896080	NonProperStrand	1	chr6	8425470	8425570	protein_coding	Gm16039	intron	ENSMUSG00000089862	ProperStrand	20	1	-inf
chr10	41500940	41501001	protein_coding	Cep57l1	intron	ENSMUSG00000019813	NonProperStrand	53	chr9	110281288	110281343	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.8108
chr9	123462082	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr12	100435745	100625731	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	5	-3.4226
chr5	61037223	61037242	LINE	Lx2B	L1	chr5Lx2B61036855	ProperStrand	1	chr7	128438450	128438547	LTR	ORR1C2	MaLR	chr7ORR1C2128438423	ProperStrand	1	1	-inf
chr17	39847643	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	158821927	158822011	LTR	RMER19B	ERVK	chr2RMER19B158821617	NonProperStrand	4	1	-3.7035
chr11	86338914	86338941	protein_coding	Rps6kb1	intron	ENSMUSG00000020516	ProperStrand	34	chr12	84345936	84345953	protein_coding	Dpf3	intron	ENSMUSG00000021221	NonProperStrand	34	1	-14.3211
chr2	82729223	82729313	LINE	L1Md_F2	L1	chr2L1Md_F282729177	ProperStrand	1	chr2	82729082	82729182	LINE	L1Md_T	L1	chr2L1Md_T82722713	ProperStrand	1	1	-inf
chr2	21828890	21828910	LINE	Lx8	L1	chr2Lx821827758	ProperStrand	1	chr17	31134616	31134751	protein_coding	Umodl1	intron	ENSMUSG00000054134	ProperStrand	35	1	-inf
chr7	79481617	79481677	LINE	L1Md_T	L1	chr7L1Md_T79477814	NonProperStrand	2	chr16	14152065	14152121	protein_coding	4921513D23Rik	exon	ENSMUSG00000060657	ProperStrand	75	2	-inf
chr10	61094534	61094655	LINE	L2b	L2	chr10L2b61094529	ProperStrand	1	chr12	68181657	68181674	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr3	96270115	96270190	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr7	28042887	28042968	protein_coding	Adck4	utr3	ENSMUSG00000003762	NonProperStrand	4	1	-18.9771
chr17	4082116	4082235	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr4	132310727	132310761	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-5.3992
chr2	71080948	71081017	protein_coding	Dync1i2	intron	ENSMUSG00000027012	ProperStrand	14	chr18	69583288	69583344	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	1	-13.2272
chr2	52135422	52135504	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	chr5	20774846	20774885	protein_coding	Pion	intron	ENSMUSG00000039934	NonProperStrand	19	1	-12.6982
chrX	39726699	39726799	LTR	MTD	MaLR	chrXMTD39726678	NonProperStrand	1	chrX	39726892	39726982	SINE	B1_Mur4	Alu	chrXB1_Mur439726883	NonProperStrand	1	1	-inf
chr13	58553785	58553870	SINE	B1_Mus1	Alu	chr13B1_Mus158553795	ProperStrand	1	chr17	33804193	33804231	protein_coding	Hnrnpm	intron	ENSMUSG00000059208	ProperStrand	59	1	-inf
chr4	116218657	116218678	LTR	MERVL-int	ERVL	chr4MERVL-int116215640	ProperStrand	1	chr11	61561825	61561869	protein_coding	Prpsap2	intron	ENSMUSG00000020528	ProperStrand	74	1	-inf
chr15	44870216	44870306	LINE	L1Md_F2	L1	chr15L1Md_F244869747	ProperStrand	1	chr15	44870378	44870478	Simple_repeat	(GGAA)n	Simple_repeat	chr15(GGAA)n44870406	ProperStrand	1	1	-inf
chr17	39846660	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	121406313	121406353	SINE	B4A	B4	chr9B4A121406322	ProperStrand	1	1	-inf
chr2	150636242	150636271	protein_coding	Pygb	intron	ENSMUSG00000033059	NonProperStrand	63	chr19	8968318	8969193	protein_coding	Ints5	intron	ENSMUSG00000071652	ProperStrand	72	1	-11.5577
chr6	120775011	120775111	LTR	MTA_Mm	MaLR	chr6MTA_Mm120775002	ProperStrand	2	chr6	120776334	120776424	LTR	MTA_Mm	MaLR	chr6MTA_Mm120776301	ProperStrand	2	2	-inf
chr4	118625684	118625857	SINE	B1_Mur4	Alu	chr4B1_Mur4118625818	ProperStrand	1	chr9	62796484	62796513	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-inf
chr9	21833583	21838754	protein_coding	Elavl3	intron	ENSMUSG00000003410	ProperStrand	162	chr3	129583229	129583317	protein_coding	Pla2g12a	intron	ENSMUSG00000027999	ProperStrand	35	1	-11.1172
chr17	24700332	24700348	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr9	56223578	56223653	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-5.5173
chr17	34906054	34906162	LTR	RLTR13D6	ERVK	chr17RLTR13D634906039	ProperStrand	2	chr8	48117220	48117299	protein_coding	Enpp6	intron	ENSMUSG00000038173	ProperStrand	45	1	-19.8306
chr17	39845535	39845589	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr15	81332882	81332926	SINE	B1_Mus2	Alu	chr15B1_Mus281332869	ProperStrand	1	1	-inf
chr10	20227535	20227559	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr4	100207597	100207669	protein_coding	Ube2u	intron	ENSMUSG00000069733	ProperStrand	25	1	-10.4893
chr8	13189288	13189312	protein_coding	Grtp1	intron	ENSMUSG00000038515	ProperStrand	34	chr4	119119627	119119695	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-8.8736
chr1	190814657	190814728	protein_coding	Kctd3	intron	ENSMUSG00000026608	ProperStrand	35	chr2	122064785	122064839	protein_coding	Sord	intron	ENSMUSG00000027227	NonProperStrand	25	1	-14.8889
chr15	68877592	68877692	protein_coding	Khdrbs3	intron	ENSMUSG00000022332	NonProperStrand	6	chr4	133964796	133964886	protein_coding	Pafah2	intron	ENSMUSG00000037366	ProperStrand	57	1	-16.9489
chr17	39847102	39847241	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	95668874	95671419	protein_coding	Mrps21	intron	ENSMUSG00000054312	NonProperStrand	22	2	-3.0362
chrX	136214492	136214528	LTR	ORR1A4-int	MaLR	chrXORR1A4-int136214253	NonProperStrand	17	chr3	88699676	88699755	protein_coding	Gon4l	exon	ENSMUSG00000054199	ProperStrand	66	1	-14.3916
chr7	27910925	27911015	antisense	Gm15883	.	ENSMUSG00000086868	ProperStrand	3	chr17	30708313	30708413	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-13.5963
chr13	14979352	14979452	LINE	L1Md_F2	L1	chr13L1Md_F214973247	ProperStrand	1	chr13	14979502	14979592	LTR	ORR1D2-int	MaLR	chr13ORR1D2-int14979459	ProperStrand	1	1	-inf
chr17	29611767	29611857	lincRNA	Gm16912	intron	ENSMUSG00000087551	ProperStrand	1	chr17	28729339	28729439	protein_coding	Srpk1	intron	ENSMUSG00000004865	NonProperStrand	24	1	-inf
chr7	145237838	145237862	SINE	ID_B1	B4	chr7ID_B1145237794	ProperStrand	1	chr9	123462128	123462164	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847659	39847689	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	43598119	43598226	LTR	RMER21B	ERV1	chr17RMER21B43598012	NonProperStrand	1	1	-inf
chr12	4313051	4313068	protein_coding	Ncoa1	exon	ENSMUSG00000020647	ProperStrand	80	chr14	45283901	45283967	protein_coding	Gm8257	intron	ENSMUSG00000079265	ProperStrand	33	1	-12.6528
chr4	130734875	130734964	LTR	RLTR19-int	ERVK	chr4RLTR19-int130734886	ProperStrand	3	chr4	130735111	130735172	SINE	B1_Mus2	Alu	chr4B1_Mus2130735059	ProperStrand	1	1	-inf
chr15	77196891	77196991	SINE	B1F	Alu	chr15B1F77196854	NonProperStrand	2	chr15	77197002	77197092	Simple_repeat	(GA)n	Simple_repeat	chr15(GA)n77197002	NonProperStrand	2	2	-inf
chr2	171934880	171934970	LTR	MTE2a	MaLR	chr2MTE2a171934905	ProperStrand	1	chr2	171934758	171934858	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n171934773	NonProperStrand	1	1	-inf
chr17	47503032	47503132	LTR	MT2B	ERVL	chr17MT2B47502643	NonProperStrand	1	chr2	121936065	121936155	protein_coding	Spg11	intron	ENSMUSG00000033396	ProperStrand	10	1	-inf
chr1	35853334	35853415	LINE	L1MCa	L1	chr1L1MCa35853339	ProperStrand	1	chr1	35853778	35853814	SINE	B4A	B4	chr1B4A35853751	NonProperStrand	1	1	-inf
chr10	71228108	71228148	LINE	Lx4A	L1	chr10Lx4A71228100	NonProperStrand	1	chr17	39847188	39847276	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	84959828	84960005	LINE	L1Md_T	L1	chr8L1Md_T84959229	ProperStrand	8	chr9	123461957	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr2	173260038	173260128	LTR	MTEb	MaLR	chr2MTEb173260060	ProperStrand	10	chr2	173259902	173260002	SINE	B1_Mus2	Alu	chr2B1_Mus2173259888	ProperStrand	8	8	-inf
chr1	81521217	81521307	LINE	Lx7	L1	chr1Lx781520747	ProperStrand	1	chr1	81521379	81521479	LTR	ORR1B2	MaLR	chr1ORR1B281521408	ProperStrand	1	1	-inf
chr17	39846378	39846431	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	88259004	88259020	lincRNA	C130036L24Rik	intron	ENSMUSG00000073627	ProperStrand	1	1	-inf
chr17	39848182	39848210	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	63964510	63964628	protein_coding	0610007P08Rik	intron	ENSMUSG00000021470	NonProperStrand	8	1	-5.1688
chr8	108846540	108846645	lincRNA	Gm17245	intron	ENSMUSG00000067626	NonProperStrand	77	chr4	53864314	53864365	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-8.9269
chr15	99975261	99975399	protein_coding	Dip2b	intron	ENSMUSG00000023026	ProperStrand	60	chr1	64603755	64603775	protein_coding	Creb1	intron	ENSMUSG00000025958	NonProperStrand	5	1	-17.2161
chr11	3502169	3502187	Simple_repeat	(CTG)n	Simple_repeat	chr11(CTG)n3502122	NonProperStrand	1	chr9	64848821	64848858	protein_coding	Ptplad1	exon	ENSMUSG00000033629	NonProperStrand	5	1	-inf
chr9	94535245	94535274	LINE	Lx3A	L1	chr9Lx3A94535215	ProperStrand	1	chr17	39846405	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846097	39846184	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	119225947	119226016	protein_coding	Slc26a11	intron	ENSMUSG00000039908	NonProperStrand	5	1	-6.7797
chr2	91798527	91798599	protein_coding	Dgkz	intron	ENSMUSG00000040479	NonProperStrand	16	chr7	103550506	103550560	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-15.1227
chr10	83416870	83416957	LINE	L1Md_F2	L1	chr10L1Md_F283416435	NonProperStrand	1	chr6	51475310	51478444	protein_coding	Snx10	intron	ENSMUSG00000038301	ProperStrand	60	1	-inf
chr14	19798509	19798558	SINE	PB1D10	Alu	chr14PB1D1019798490	NonProperStrand	2	chr14	27483588	27483662	protein_coding	Arf4	intron	ENSMUSG00000021877	ProperStrand	19	1	-20.1864
chr9	37500729	37500819	DNA	Tigger5	MER2_type	chr9Tigger537500740	NonProperStrand	5	chr9	37500825	37500956	SINE	PB1D7	Alu	chr9PB1D737500841	NonProperStrand	5	5	-inf
chr2	144968605	144968660	LINE	L1Md_A	L1	chr2L1Md_A144965769	ProperStrand	1	chr6	118428001	118428047	protein_coding	Zfp9	intron	ENSMUSG00000072623	NonProperStrand	2	1	-inf
chr2	59236435	59236481	SINE	B1_Mur1	Alu	chr2B1_Mur159236334	NonProperStrand	1	chr2	59238048	59238099	SINE	B3A	B2	chr2B3A59238033	NonProperStrand	1	1	-inf
chr12	71132688	71132756	protein_coding	Nin	exon	ENSMUSG00000021068	ProperStrand	24	chr19	10615026	10615104	protein_coding	Cpsf7	intron	ENSMUSG00000034820	ProperStrand	82	1	-13.2516
chr15	82044111	82044201	SINE	B1_Mus1	Alu	chr15B1_Mus182044096	ProperStrand	1	chr15	82044321	82044421	SINE	PB1	Alu	chr15PB182044325	ProperStrand	1	1	-inf
chr16	47057473	47057490	LTR	MLT1D	MaLR	chr16MLT1D47057343	NonProperStrand	16	chr11	72442574	72442805	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	1	-13.5679
chr6	25272041	25272131	LTR	MYSERV-int	ERVK	chr6MYSERV-int25271998	NonProperStrand	1	chr6	25271470	25271570	LTR	RMER19C	ERVK	chr6RMER19C25271444	NonProperStrand	1	1	-inf
chr11	60454631	60454731	SINE	B1_Mus1	Alu	chr11B1_Mus160454641	ProperStrand	4	chr11	60454544	60454634	SINE	MIRc	MIR	chr11MIRc60454550	ProperStrand	3	3	-inf
chr10	91151885	91151975	LINE	L1Md_T	L1	chr10L1Md_T91151693	ProperStrand	1	chr17	39846622	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847611	39847666	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	180175931	180176113	SINE	ID_B1	B4	chr2ID_B1180176016	ProperStrand	1	1	-inf
chr4	152523638	152523700	SINE	B2_Mm2	B2	chr4B2_Mm2152523604	NonProperStrand	1	chr4	152527178	152527230	Simple_repeat	(TTAGGG)n	Simple_repeat	chr4(TTAGGG)n152527149	NonProperStrand	1	1	-inf
chrX	74317445	74317682	LINE	Lx7	L1	chrXLx774316907	ProperStrand	1	chr17	39847636	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	21020794	21020828	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n21020780	ProperStrand	1	chr7	98142981	98143078	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-inf
chr17	39845361	39845451	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr16	6964816	6964839	protein_coding	Rbfox1	intron	ENSMUSG00000008658	ProperStrand	11	1	-5.4204
chr2	25364550	25364640	LTR	MLT1C	MaLR	chr2MLT1C25364509	ProperStrand	2	chr2	25364186	25364524	LTR	RMER17C	ERVK	chr2RMER17C25364015	ProperStrand	3	2	-inf
chr15	8426003	8426089	LTR	MTD	MaLR	chr15MTD8425916	ProperStrand	1	chr17	39847007	39847023	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	95297627	95297708	SINE	B4A	B4	chr10B4A95297455	NonProperStrand	1	chr19	5802347	5802385	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr9	123462089	123462126	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	121196812	121196891	protein_coding	Strc	intron	ENSMUSG00000033498	NonProperStrand	6	1	-5.4370
chr8	46578866	46578966	DNA	Tigger5	MER2_type	chr8Tigger546578223	NonProperStrand	3	chr8	46579054	46579144	SINE	B1_Mur3	Alu	chr8B1_Mur346579080	ProperStrand	3	3	-inf
chr1	119581764	119581819	LINE	L1Md_F3	L1	chr1L1Md_F3119580212	NonProperStrand	1	chr17	39847277	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	140254891	140254992	SINE	B1_Mus1	Alu	chr5B1_Mus1140254891	ProperStrand	7	chr5	140255024	140255114	SINE	B2_Mm1a	B2	chr5B2_Mm1a140255020	NonProperStrand	7	7	-inf
chr8	123157876	123157976	protein_coding	1190005I06Rik	intron	ENSMUSG00000043687	ProperStrand	4	chr8	123158549	123158639	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-11.8597
chr14	19755068	19755181	LINE	L1_Mus1	L1	chr14L1_Mus119749429	ProperStrand	53	chr14	19756550	19756580	LTR	MTC	MaLR	chr14MTC19756459	ProperStrand	1	1	-inf
chr9	96684121	96684174	DNA	MER2B	MER2_type	chr9MER2B96684106	NonProperStrand	1	chrX	144296140	144296243	SINE	B3	B2	chrXB3144296156	ProperStrand	1	1	-inf
chr17	39847207	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	61392278	61392378	LTR	MLT1J	MaLR	chr9MLT1J61392167	ProperStrand	1	1	-inf
chr15	98076669	98082302	LINE	L1_Mur3	L1	chr15L1_Mur398081526	ProperStrand	1	chr15	98082312	98085046	LTR	RMER6A	ERVK	chr15RMER6A98084904	NonProperStrand	3	1	-inf
chr6	82743434	82743483	Simple_repeat	(TTTC)n	Simple_repeat	chr6(TTTC)n82743334	NonProperStrand	1	chr5	114851998	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr17	32151654	32153528	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	chr15	7941785	7941853	protein_coding	Wdr70	intron	ENSMUSG00000039828	ProperStrand	93	1	-10.0178
chr3	109963855	109963872	LINE	L1Md_A	L1	chr3L1Md_A109963352	NonProperStrand	2	chr4	47368025	47368166	protein_coding	Tgfbr1	intron	ENSMUSG00000007613	ProperStrand	20	2	-inf
chr2	154887790	154888197	protein_coding	Ahcy	intron	ENSMUSG00000027597	ProperStrand	11	chr13	97190552	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.5318
chr11	60538791	60538839	protein_coding	Flii	intron	ENSMUSG00000002812	NonProperStrand	22	chr9	110281286	110281305	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.5855
chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr6	125121807	125121862	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	78	1	-8.9010
chr3	87733397	87733487	protein_coding	Rrnad1	intron	ENSMUSG00000004896	NonProperStrand	4	chr3	87734536	87735428	protein_coding	Isg20l2	utr5	ENSMUSG00000048039	ProperStrand	10	1	-inf
chr5	3619660	3619790	protein_coding	Pex1	intron	ENSMUSG00000005907	ProperStrand	26	chr18	7222700	7222716	protein_coding	Armc4	exon	ENSMUSG00000061802	ProperStrand	7	1	-18.1953
chr17	39848036	39848067	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	195060449	195060539	protein_coding	Hsd11b1	intron	ENSMUSG00000016194	ProperStrand	5	1	-3.2379
chr15	77792752	77792869	protein_coding	Eif3d	intron	ENSMUSG00000016554	ProperStrand	79	chr3	14565748	14565764	protein_coding	Lrrcc1	exon	ENSMUSG00000027550	ProperStrand	7	1	-15.9040
chr17	39846726	39846781	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	127090422	127090492	LTR	RMER4A	ERVK	chr2RMER4A127090091	NonProperStrand	2	1	-5.3533
chr19	30165611	30165662	protein_coding	Uhrf2	intron	ENSMUSG00000024817	NonProperStrand	92	chr7	99562093	99562195	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-8.7319
chr15	84706255	84706345	LTR	ORR1D1	MaLR	chr15ORR1D184706238	ProperStrand	1	chr15	84706450	84706550	LTR	ORR1D1	MaLR	chr15ORR1D184706410	ProperStrand	1	1	-inf
chr17	39846411	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	48025712	48025782	protein_coding	Zfp746	intron	ENSMUSG00000057691	ProperStrand	8	2	-4.2675
chr1	63310594	63310611	SINE	RSINE1	B4	chr1RSINE163310565	ProperStrand	2	chr11	65023010	65023123	protein_coding	Myocd	intron	ENSMUSG00000020542	ProperStrand	122	2	-inf
chr10	93583528	93588034	protein_coding	Fgd6	intron	ENSMUSG00000020021	ProperStrand	14	chr4	150315338	150315518	protein_coding	Tnfrsf9	intron	ENSMUSG00000028965	ProperStrand	158	12	-20.6163
chr1	143820711	143820812	LINE	L1_Mus1	L1	chr1L1_Mus1143820544	NonProperStrand	2	chr1	143820842	143820932	LINE	Lx4A	L1	chr1Lx4A143820811	NonProperStrand	2	2	-inf
chr2	25503513	25503650	LINE	Lx5	L1	chr2Lx525502677	NonProperStrand	3	chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	24	1	-20.7706
chr17	39847442	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	122115832	122115932	LTR	MTEb	MaLR	chr7MTEb122115858	NonProperStrand	1	1	-inf
chr14	20681964	20682025	DNA	RMER30	MER1_type	chr14RMER3020681808	ProperStrand	1	chr9	64295658	64295709	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	1	-inf
chr5	106666375	106666475	LTR	MTE2b	MaLR	chr5MTE2b106666308	ProperStrand	1	chr5	106666969	106667059	SINE	B4	B4	chr5B4106666912	NonProperStrand	1	1	-inf
chr8	52473001	52473091	LINE	L1_Mus1	L1	chr8L1_Mus152472479	ProperStrand	1	chr6	31152643	31152743	protein_coding	AB041803	intron	ENSMUSG00000044471	NonProperStrand	4	1	-inf
chr12	28438305	28438376	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr2	152263825	152263894	protein_coding	6820408C15Rik	intron	ENSMUSG00000032680	ProperStrand	28	1	-16.6918
chr5	146261029	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	29174449	29174537	protein_coding	Med29	intron	ENSMUSG00000003444	ProperStrand	8	1	-9.1415
chr12	8729042	8729133	protein_coding	Pum2	intron	ENSMUSG00000020594	ProperStrand	67	chr11	75746308	75746346	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	1	-9.8705
chr3	153912125	153912161	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr11	117079073	117079163	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-7.0281
chr19	8724250	8724311	SINE	B1F	Alu	chr19B1F8724255	ProperStrand	9	chr9	123461998	123462160	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr9	110281285	110281331	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr10	42781788	42781882	protein_coding	Sobp	intron	ENSMUSG00000038248	NonProperStrand	27	1	-9.1690
chr8	116667022	116667068	protein_coding	Nudt7	intron	ENSMUSG00000031767	NonProperStrand	24	chr5	142904179	142904217	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-10.1266
chr7	34213353	34213432	LINE	L1Md_F2	L1	chr7L1Md_F234213371	NonProperStrand	20	chr17	39843956	39844012	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	1	-6.1278
chr11	82943619	82943638	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	14	chr5	146261005	146261055	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-7.9707
chrX	105799109	105799158	LINE	Lx	L1	chrXLx105797291	NonProperStrand	4	chr16	57416290	57416329	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	1	-14.1917
chr6	49421667	49421773	LTR	MurERV4_19-int	ERVK	chr6MurERV4_19-int49421670	NonProperStrand	1	chr9	106368863	106368903	SINE	B2_Mm1a	B2	chr9B2_Mm1a106368870	ProperStrand	1	1	-inf
chr7	15938770	15938870	LTR	LTRIS_Mus	ERV1	chr7LTRIS_Mus15938504	ProperStrand	14	chr1	134597603	134599060	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	1	-12.3522
chr1	174768660	174768752	LINE	L1_Mus2	L1	chr1L1_Mus2174768462	NonProperStrand	1	chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	74693154	74693209	LTR	MERVL-int	ERVL	chr1MERVL-int74692597	ProperStrand	3	chr10	42416499	42416551	protein_coding-noncoding	Ostm1	utr5	ENSMUSG00000038280	NonProperStrand	3	1	-20.2168
chr3	53492989	53493079	LTR	MTB_Mm	MaLR	chr3MTB_Mm53492865	ProperStrand	1	chr3	53492792	53492892	LTR	ORR1D1	MaLR	chr3ORR1D153492697	ProperStrand	1	1	-inf
mmu-miR-706	0	18	miRNA	mmu-miR-706	.	mmu-miR-706	NonProperStrand	6	chr1	179375778	179375869	protein_coding	Zfp238	intron	ENSMUSG00000063659	NonProperStrand	4	1	-inf
chr3	80946743	80946843	protein_coding	Pdgfc	intron	ENSMUSG00000028019	ProperStrand	5	chr14	33967464	33967554	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-15.9801
chr6	48086789	48086863	lincRNA	Gm16630	intron	ENSMUSG00000086383	NonProperStrand	12	chr13	44869625	44869681	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.6975
chr8	114939769	114939823	SINE	B4	B4	chr8B4114939671	ProperStrand	1	chr9	123462021	123462073	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	35541288	35647493	protein_coding-noncoding	Sema5b	utr5	ENSMUSG00000052133	ProperStrand	3	chr16	35541375	35647406	protein_coding	Sema5b	exon	ENSMUSG00000052133	ProperStrand	183	3	-inf
chr10	83393206	83393306	LTR	RMER17C-int	ERVK	chr10RMER17C-int83391239	ProperStrand	9	chr4	116899540	116899630	protein_coding	Gm1661	intron	ENSMUSG00000060268	NonProperStrand	9	1	-20.8260
chr11	97781638	97781750	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr9	123461972	123462092	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	4	-9.6573
chr7	141685194	141685294	LINE	L1Md_F2	L1	chr7L1Md_F2141684859	ProperStrand	1	chr7	141685355	141685445	LINE	L1Md_F2	L1	chr7L1Md_F2141685287	ProperStrand	1	1	-inf
chr19	8875329	8875604	SINE	B1_Mur1	Alu	chr19B1_Mur18875507	NonProperStrand	8	chr19	8875192	8875322	SINE	ID_B1	B4	chr19ID_B18875194	ProperStrand	8	8	-inf
chr19	3497498	3497547	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	chr8	18727015	18727091	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-4.4406
chr15	85177749	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr5	27748843	27750966	protein_coding	Dpp6	intron	ENSMUSG00000061576	NonProperStrand	86	1	-8.5822
chr4	134633981	134634071	LTR	MTE-int	MaLR	chr4MTE-int134633924	ProperStrand	2	chr4	134634082	134634182	LTR	MTEb	MaLR	chr4MTEb134634104	ProperStrand	2	2	-inf
chr14	59451062	59451132	LINE	L1Md_F2	L1	chr14L1Md_F259449149	NonProperStrand	2	chr12	3965834	3965894	protein_coding	Efr3b	utr3	ENSMUSG00000020658	ProperStrand	37	1	-21.5930
chr5	140820993	140821029	protein_coding	Snx8	intron	ENSMUSG00000029560	ProperStrand	18	chr5	140811832	140811916	protein_coding	Nudt1	intron	ENSMUSG00000036639	NonProperStrand	5	1	-19.9608
chr4	117202570	117202643	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr1	82331502	82331563	protein_coding	Rhbdd1	intron	ENSMUSG00000026142	ProperStrand	165	1	-11.6842
chr10	58326931	58327013	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	chr12	54159389	54159430	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-7.7321
chr4	4791052	4793315	LINE	L1_Mus2	L1	chr4L1_Mus24789992	NonProperStrand	5	chr17	39847338	39847946	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-9.2538
chr17	39848514	39848614	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	123446065	123446095	SINE	RSINE1	B4	chr4RSINE1123445976	ProperStrand	1	1	-inf
chr17	39847555	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	90038444	90038916	protein_coding	Jtb	intron	ENSMUSG00000027937	NonProperStrand	3	1	-4.3512
chr1	179787013	179787068	SINE	RSINE1	B4	chr1RSINE1179787002	NonProperStrand	1	chr10	20328645	20328723	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	1	-inf
chr3	103344401	103344513	SINE	MIR3	MIR	chr3MIR3103344344	NonProperStrand	1	chr2	155992169	155992205	protein_coding	Rbm39	intron	ENSMUSG00000027620	NonProperStrand	38	1	-inf
chr15	58936286	58936384	LTR	MTD	MaLR	chr15MTD58936282	NonProperStrand	2	chr19	5493924	5493972	protein_coding	Cfl1	utr3	ENSMUSG00000056201	ProperStrand	65	1	-20.1199
chr8	26864885	26864975	protein_coding	Ddhd2	exon	ENSMUSG00000061313	NonProperStrand	1	chr8	26865097	26865197	protein_coding	Gm17484	utr5	ENSMUSG00000091514	ProperStrand	1	1	-inf
chr4	91364823	91364885	LINE	L1Md_F2	L1	chr4L1Md_F291362453	NonProperStrand	6	chr4	91366019	91366097	LINE	L1Md_F2	L1	chr4L1Md_F291365851	NonProperStrand	3	1	-inf
chr18	64952937	64953053	LTR	MLT1A0	MaLR	chr18MLT1A064952880	NonProperStrand	1	chr12	4706312	4706330	protein_coding	Itsn2	intron	ENSMUSG00000020640	ProperStrand	58	1	-inf
chr14	64769368	64769458	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	chr5	22550418	22550470	protein_coding	Lhfpl3	intron	ENSMUSG00000058361	ProperStrand	32	4	-19.9543
chr19	3882004	3882053	protein_coding	Chka	exon	ENSMUSG00000024843	ProperStrand	73	chr3	95341323	95341377	protein_coding	Ctss	intron	ENSMUSG00000038642	NonProperStrand	22	1	-13.6645
chr17	39847277	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	55089178	55090736	LTR	RLTR15	ERVK	chr1RLTR1555089095	ProperStrand	8	1	-3.3803
chr10	78173974	78174953	SINE	B1_Mur3	Alu	chr10B1_Mur378173901	ProperStrand	5	chr10	78174991	78175570	protein_coding	Casp14	utr3	ENSMUSG00000005355	ProperStrand	18	4	-inf
chr1	38206182	38206272	LTR	MT2B	ERVL	chr1MT2B38206179	NonProperStrand	1	chr1	38205977	38206077	SINE	B4	B4	chr1B438205845	NonProperStrand	1	1	-inf
chr4	130774542	130774614	DNA	URR1B	MER1_type	chr4URR1B130774376	NonProperStrand	2	chr4	130778850	130778894	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int130778843	ProperStrand	33	1	-20.7426
chr7	100096267	100096343	LTR	ORR1B1	MaLR	chr7ORR1B1100096140	NonProperStrand	1	chr11	116080240	116080302	polymorphic_pseudogene	Cdk3-ps	.	ENSMUSG00000092300	NonProperStrand	15	1	-inf
chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	chr17	30611980	30612070	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-6.4587
chr12	78350927	78351002	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr12	110279267	110279283	protein_coding	Begain	intron	ENSMUSG00000040867	NonProperStrand	4	1	-11.5357
chr4	27768415	27768505	LTR	ORR1A3-int	MaLR	chr4ORR1A3-int27768004	ProperStrand	1	chr5	30060676	30060776	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	1	-inf
chr17	39846759	39846796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	69683472	69683496	SINE	B2_Mm2	B2	chr11B2_Mm269683415	ProperStrand	1	1	-inf
chr2	160654446	160654492	protein_coding	Zhx3	intron	ENSMUSG00000035877	ProperStrand	62	chr10	127028485	127029608	protein_coding	Lrp1	intron	ENSMUSG00000040249	ProperStrand	36	1	-12.9903
chr12	36415636	36478656	LINE	Lx5	L1	chr12Lx536414380	NonProperStrand	1	chr2	130872954	130873017	SINE	B3A	B2	chr2B3A130872947	ProperStrand	6	1	-inf
chr7	28595713	28595768	protein_coding	Zfp626	intron	ENSMUSG00000030604	NonProperStrand	11	chr8	72320533	72320578	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	1	-15.6064
chr7	92908483	92908583	LINE	L1Md_A	L1	chr7L1Md_A92908432	ProperStrand	2	chr7	92908338	92908428	LINE	L1Md_T	L1	chr7L1Md_T92905643	NonProperStrand	2	1	-19.8939
chr5	140801203	140801303	LTR	RMER5	ERV1	chr5RMER5140800953	NonProperStrand	7	chr5	140801307	140801397	SINE	B1_Mur4	Alu	chr5B1_Mur4140801321	NonProperStrand	7	7	-inf
chr1	63989029	63989129	LINE	L1MDa	L1	chr1L1MDa63989040	NonProperStrand	1	chr1	63988667	63988757	LTR	MTC	MaLR	chr1MTC63988628	ProperStrand	1	1	-inf
chr15	8231185	8231202	LTR	RLTR1C	ERV1	chr15RLTR1C8230887	NonProperStrand	2	chr4	101123856	101123976	protein_coding	Ak4	intron	ENSMUSG00000028527	ProperStrand	29	1	-19.5186
chr17	39846462	39846551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	34617262	34617317	LTR	RLTR20D	ERVK	chr17RLTR20D34617015	ProperStrand	1	1	-inf
chr6	122474543	122474601	protein_coding	Mfap5	intron	ENSMUSG00000030116	NonProperStrand	22	chr4	133691104	133691154	protein_coding	Ccdc21	intron	ENSMUSG00000037443	ProperStrand	102	1	-12.9903
chr7	136911979	136912032	Low_complexity	GA-rich	Low_complexity	chr7GA-rich136911964	ProperStrand	1	chr7	136911772	136911808	SINE	B3	B2	chr7B3136911630	ProperStrand	2	1	-inf
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	29491840	29491926	SINE	ID_B1	B4	chr17ID_B129491805	ProperStrand	1	1	-inf
chr2	52710899	52710989	SINE	B2_Mm2	B2	chr2B2_Mm252710857	NonProperStrand	1	chr2	52710769	52710870	SINE	PB1D10	Alu	chr2PB1D1052710763	NonProperStrand	1	1	-inf
chr2	179009151	179009251	LINE	L1MCa	L1	chr2L1MCa179008327	ProperStrand	1	chr2	179009271	179009361	SINE	B3A	B2	chr2B3A179009251	NonProperStrand	1	1	-inf
chr7	46604321	46604342	LINE	L1_Mur1	L1	chr7L1_Mur146603349	ProperStrand	1	chr5	114852004	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr18	35554551	35554635	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr1	136731543	136731574	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-6.7152
chr13	21914928	21914952	LTR	RMER16-int	ERVK	chr13RMER16-int21914594	ProperStrand	5	chr17	30486563	30486635	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-12.3929
chr1	39552444	39552534	LINE	Lx7	L1	chr1Lx739552409	NonProperStrand	1	chr1	39552298	39552398	LTR	ORR1E-int	MaLR	chr1ORR1E-int39552249	ProperStrand	1	1	-inf
chr5	137779309	137779409	SINE	PB1D10	Alu	chr5PB1D10137779330	NonProperStrand	2	chr5	137779407	137779497	Simple_repeat	(TAGA)n	Simple_repeat	chr5(TAGA)n137779431	NonProperStrand	2	2	-inf
chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	chr6	90978665	90978786	protein_coding	Nup210	intron	ENSMUSG00000030091	ProperStrand	121	1	-11.2856
chr4	146976184	146976283	LINE	Lx	L1	chr4Lx146975795	ProperStrand	1	chr17	39847893	39847952	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	4082120	4082264	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr6	67008902	67010896	lincRNA	E230016M11Rik	intron	ENSMUSG00000087231	ProperStrand	10	2	-inf
chr10	75551644	75551662	protein_coding	Slc5a4b	intron	ENSMUSG00000020226	ProperStrand	1	chr9	115067803	115067870	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	1	-inf
chr5	57796220	57796310	LINE	L1Md_F2	L1	chr5L1Md_F257796228	ProperStrand	1	chr5	57795922	57796022	LINE	L1_Mur1	L1	chr5L1_Mur157795683	NonProperStrand	1	1	-inf
chr11	52246389	52246474	SINE	B4A	B4	chr11B4A52246383	NonProperStrand	2	chr13	44869595	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-inf
chr18	57546995	57547054	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	19	chr3	152436400	152436452	protein_coding	Pigk	intron	ENSMUSG00000039047	ProperStrand	95	1	-13.4339
chr11	109011646	109011701	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	32792671	32792725	protein_coding	Ppp1cb	intron	ENSMUSG00000014956	NonProperStrand	37	1	-7.0595
chr15	65591428	65591518	LTR	RLTR20C	ERVK	chr15RLTR20C65591413	NonProperStrand	1	chr2	131918890	131918990	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-inf
chr8	114943333	114943411	LTR	ORR1A2	MaLR	chr8ORR1A2114943138	ProperStrand	1	chr13	23620902	23620975	lincRNA	Gm11335	intron	ENSMUSG00000085016	ProperStrand	56	1	-inf
chr11	109011664	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	101290033	101290125	protein_coding	Rundc1	intron	ENSMUSG00000035007	NonProperStrand	9	1	-9.9559
chr6	115950125	115950146	SINE	PB1D7	Alu	chr6PB1D7115950047	ProperStrand	1	chr7	96289202	96289233	protein_coding	Tmem135	utr3	ENSMUSG00000039428	NonProperStrand	285	1	-inf
chr9	78209086	78209123	SINE	RSINE1	B4	chr9RSINE178209006	NonProperStrand	2	chr9	123461962	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr14	66987853	66987953	LTR	ORR1A4	MaLR	chr14ORR1A466987682	NonProperStrand	2	chr14	66988117	66988207	SINE	B1_Mm	Alu	chr14B1_Mm66988074	NonProperStrand	1	1	-inf
chr13	69613036	69615431	LINE	Lx2	L1	chr13Lx269615356	NonProperStrand	2	chr13	69629591	69629657	LTR	RMER13A	ERVK	chr13RMER13A69628876	NonProperStrand	7	1	-21.1088
chr1	189126292	189126310	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	chr17	27634112	27634180	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-10.1367
chr12	98276048	98276065	LINE	L1Md_T	L1	chr12L1Md_T98275443	NonProperStrand	1	chr17	39847659	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846396	39847102	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	102829371	102829456	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	43	-inf
chr1	56057594	56057684	LINE	Lx8	L1	chr1Lx856057338	NonProperStrand	1	chr15	94694718	94694818	protein_coding	Tmem117	intron	ENSMUSG00000063296	ProperStrand	43	1	-inf
chr16	22392284	22392368	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr17	34854276	34854293	protein_coding	Tnxb	intron	ENSMUSG00000033327	ProperStrand	16	1	-11.7685
chr3	115929150	115929239	LINE	L1MC2	L1	chr3L1MC2115928950	ProperStrand	6	chr10	108309892	108309992	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	169	3	-inf
chr17	87975865	87975965	LTR	RodERV21-int	ERV1	chr17RodERV21-int87975746	ProperStrand	10	chr17	87975669	87975759	SINE	B1_Mur4	Alu	chr17B1_Mur487975680	NonProperStrand	2	2	-inf
chr19	5796164	5796203	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chrX	103250792	103250871	protein_coding	Atp7a	intron	ENSMUSG00000033792	NonProperStrand	68	1	-4.2011
chr1	170707905	170707928	LTR	MLT2B4	ERVL	chr1MLT2B4170707867	ProperStrand	1	chr9	123462015	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	7227662	7227762	LINE	L1Md_F2	L1	chr12L1Md_F27227258	ProperStrand	1	chr12	7227890	7227980	LINE	Lx2	L1	chr12Lx27227819	ProperStrand	1	1	-inf
chr17	39847448	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	172074317	172097738	protein_coding	Uap1	intron	ENSMUSG00000026670	NonProperStrand	7	3	-7.4178
chr17	39843633	39843698	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	61513937	61514012	protein_coding	Fam83g	intron	ENSMUSG00000042377	ProperStrand	4	1	-7.9732
chr1	129655756	129655856	protein_coding	Acmsd	intron	ENSMUSG00000026348	ProperStrand	3	chr14	33967483	33967573	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-17.1336
chr1	179794535	179794614	LTR	BGLII_B	ERVK	chr1BGLII_B179794376	ProperStrand	1	chr11	69917157	69917221	protein_coding	Asgr2	intron	ENSMUSG00000040963	NonProperStrand	118	1	-inf
chr8	105395861	105395933	LINE	L1_Rod	L1	chr8L1_Rod105395417	NonProperStrand	2	chr11	32649148	32649215	SINE	B3	B2	chr11B332649072	NonProperStrand	3	1	-20.8297
chr3	42984189	42984279	LINE	L1_Mus4	L1	chr3L1_Mus442984059	NonProperStrand	1	chr3	42983924	42984024	LTR	RMER6C	ERVK	chr3RMER6C42983839	ProperStrand	1	1	-inf
chr11	109011676	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	129200841	129207964	protein_coding-noncoding	Hdac1	utr3	ENSMUSG00000028800	NonProperStrand	5	1	-11.2339
chr17	39846838	39846896	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	100674889	100674957	protein_coding	Stat5b	intron	ENSMUSG00000020919	NonProperStrand	1	1	-inf
chr2	168183111	168183211	LTR	ORR1A2	MaLR	chr2ORR1A2168182966	ProperStrand	10	chr2	168183393	168183483	SINE	B3	B2	chr2B3168183417	ProperStrand	1	1	-inf
chr4	143178351	143178441	LINE	L1Md_T	L1	chr4L1Md_T143174883	NonProperStrand	6	chr2	154872496	154872533	protein_coding	a	intron	ENSMUSG00000027596	NonProperStrand	26	1	-19.0481
chr3	123502956	123502975	LINE	L1_Mus4	L1	chr3L1_Mus4123501905	ProperStrand	1	chr5	105787858	105787990	LTR	ORR1A2	MaLR	chr5ORR1A2105787660	ProperStrand	2	1	-inf
chr3	91786766	91786856	LINE	L1M4	L1	chr3L1M491786694	NonProperStrand	1	chr3	91786554	91786654	LINE	Lx3C	L1	chr3Lx3C91785472	NonProperStrand	1	1	-inf
chr9	64176659	64176761	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	chr7	109310730	109310748	protein_coding	Nup98	intron	ENSMUSG00000063550	ProperStrand	5	1	-14.1116
chr6	102302096	102302114	protein_coding	Cntn3	intron	ENSMUSG00000030075	NonProperStrand	10	chr2	5379274	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.1352
chr7	129590394	129590484	misc_RNA	7SK	.	ENSMUSG00000088299	NonProperStrand	1	chr7	129590210	129590310	protein_coding	Prkcb	intron	ENSMUSG00000052889	NonProperStrand	12	1	-inf
chr14	76508517	76508617	protein_coding	1200011I18Rik	intron	ENSMUSG00000022008	NonProperStrand	18	chr8	90816747	90816837	protein_coding	Adcy7	intron	ENSMUSG00000031659	NonProperStrand	4	1	-20.0512
chr1	118942970	118943092	LINE	L1Md_F2	L1	chr1L1Md_F2118941257	ProperStrand	49	chr1	118943102	118943218	LINE	L1_Mm	L1	chr1L1_Mm118943122	NonProperStrand	9	9	-inf
chr19	23982406	23982496	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	chr19	23427614	23427714	protein_coding	Mamdc2	intron	ENSMUSG00000033207	ProperStrand	13	1	-13.0747
chr7	46851014	46851885	LINE	L1_Mus1	L1	chr7L1_Mus146850082	ProperStrand	37	chr16	91678163	91678261	protein_coding	Son	intron	ENSMUSG00000022961	ProperStrand	70	1	-12.6894
chr1	16331354	16331422	protein_coding	Stau2	intron	ENSMUSG00000025920	ProperStrand	27	chr3	129661194	129661259	protein_coding	Ccdc109b	intron	ENSMUSG00000027994	NonProperStrand	64	1	-13.5081
chr7	136987264	136987319	SINE	B4A	B4	chr7B4A136987270	ProperStrand	1	chr10	69710237	69710302	protein_coding	Slc16a9	intron	ENSMUSG00000037762	ProperStrand	5	1	-inf
chr6	43660136	43660161	LINE	L1_Mur3	L1	chr6L1_Mur343660103	ProperStrand	2	chr6	43658515	43658543	LINE	Lx6	L1	chr6Lx643658057	ProperStrand	1	1	-inf
chr6	3201480	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	47985768	47985854	Low_complexity	LTR82B	ERVL	chr8LTR82B47985710	NonProperStrand	1	1	-inf
chr1	36928305	36928405	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	chr9	65196579	65196669	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-8.4381
chr14	27482180	27482197	protein_coding	Arf4	intron	ENSMUSG00000021877	NonProperStrand	3	chr18	80441979	80442037	protein_coding	Hsbp1l1	intron	ENSMUSG00000078963	ProperStrand	64	1	-18.2446
chr3	87884929	87885029	SINE	B1_Mur3	Alu	chr3B1_Mur387884898	ProperStrand	2	chr3	87885078	87885168	SINE	B2_Mm2	B2	chr3B2_Mm287885091	ProperStrand	8	1	-23.4058
chr5	66602512	66602602	LTR	RMER17C-int	ERVK	chr5RMER17C-int66602507	NonProperStrand	2	chr5	66602387	66602487	SINE	B1_Mus2	Alu	chr5B1_Mus266602362	NonProperStrand	2	2	-inf
chrX	96666760	96666850	SINE	B1_Mus2	Alu	chrXB1_Mus296666768	NonProperStrand	1	chrX	96666296	96666396	protein_coding	Pja1	utr5	ENSMUSG00000034403	ProperStrand	1	1	-inf
chr11	115645801	115645872	protein_coding	2310067B10Rik	intron	ENSMUSG00000020747	NonProperStrand	47	chr13	112578223	112578308	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-4.6731
chr19	5802584	5802672	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	97048804	97048854	protein_coding	Kpnb1	intron	ENSMUSG00000001440	NonProperStrand	15	1	-7.1829
chr2	114140924	114141024	LINE	L1_Mm	L1	chr2L1_Mm114140399	ProperStrand	2	chr2	114141025	114141115	LINE	L1_Mus1	L1	chr2L1_Mus1114141041	NonProperStrand	1	1	-inf
chr12	103099997	103100097	protein_coding	Trip11	intron	ENSMUSG00000021188	ProperStrand	3	chr12	89319833	89319923	protein_coding	Gm8607	intron	ENSMUSG00000092138	NonProperStrand	5	1	-inf
chr11	79518188	79518257	lincRNA	Gm11205	intron	ENSMUSG00000084969	ProperStrand	1	chr11	79518145	79518189	tRNA	tRNA550-ThrCGT	.	881408	ProperStrand	1	1	-inf
chr10	40258496	40258635	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr16	22263644	22263666	protein_coding	Tra2b	intron	ENSMUSG00000022858	ProperStrand	57	1	-5.4568
chr5	6946912	6947012	LINE	L1_Mus1	L1	chr5L1_Mus16946925	ProperStrand	1	chr5	6946816	6946906	LTR	MTD	MaLR	chr5MTD6946683	ProperStrand	1	1	-inf
chr5	45701864	45701924	LINE	L1VL2	L1	chr5L1VL245701772	NonProperStrand	5	chr17	39846580	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr2	100939068	100939168	LTR	BGLII	ERVK	chr2BGLII100939025	ProperStrand	1	chr2	100938949	100939039	LTR	RMER3D-int	ERVK	chr2RMER3D-int100938856	ProperStrand	1	1	-inf
chr3	133466662	133467131	LINE	L1Md_F2	L1	chr3L1Md_F2133466558	NonProperStrand	5	chr17	39847520	39847711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-5.9065
chr17	70963679	70963788	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	139338137	139338177	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	3	-14.0454
chr17	17347057	17347086	SINE	B2_Mm2	B2	chr17B2_Mm217346971	ProperStrand	1	chr12	67665680	67665719	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr17	39847039	39847140	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	103535312	103535330	protein_coding	Chl1	intron	ENSMUSG00000030077	NonProperStrand	5	1	-3.1907
chr17	39848643	39848740	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	145182848	145182886	protein_coding	Gm13212	intron	ENSMUSG00000078502	NonProperStrand	6	1	-6.0469
chr2	22744838	22744915	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	53666638	53666694	protein_coding	4921523A10Rik	intron	ENSMUSG00000044957	NonProperStrand	20	1	-9.0188
chr17	39843838	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr14	10983425	10983443	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	48	1	-3.3840
chr5	146583140	146583156	LINE	L1Md_F2	L1	chr5L1Md_F2146579233	ProperStrand	2	chr17	39846498	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr6	37409855	37409945	LINE	Lx3_Mus	L1	chr6Lx3_Mus37409858	ProperStrand	6	chr6	37409761	37409861	LTR	RLTRETN_Mm	ERVK	chr6RLTRETN_Mm37409523	ProperStrand	6	6	-inf
chr11	60784236	60784341	LINE	L1MC5	L1	chr11L1MC560784152	NonProperStrand	1	chr17	39847324	39847359	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr7	75673142	75673232	LINE	Lx8	L1	chr7Lx875673018	NonProperStrand	1	chr7	75673017	75673117	LINE	Lx8	L1	chr7Lx875673018	ProperStrand	1	1	-inf
chr2	63887960	63888050	protein_coding-noncoding	Fign	utr3	ENSMUSG00000075324	ProperStrand	2	chr2	63887850	63887950	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	2	-inf
chr2	49615572	49615641	protein_coding	Kif5c	intron	ENSMUSG00000026764	NonProperStrand	5	chr15	4968314	4968372	protein_coding	C7	intron	ENSMUSG00000079105	NonProperStrand	1	1	-inf
chr17	39846452	39846490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr5	17776749	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	NonProperStrand	2	1	-19.9529
chr17	36851024	36851114	LINE	L1Md_T	L1	chr17L1Md_T36850150	ProperStrand	1	chr17	36851232	36852472	LINE	L1Md_T	L1	chr17L1Md_T36851179	ProperStrand	2	1	-inf
chr11	48800865	48800933	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr17	48300161	48300179	protein_coding	A530064D06Rik	intron	ENSMUSG00000043939	NonProperStrand	4	1	-14.9491
chr4	129628592	129628691	protein_coding	Spocd1	intron	ENSMUSG00000028784	NonProperStrand	17	chr9	20871153	20871201	protein_coding	Zglp1	intron	ENSMUSG00000079681	NonProperStrand	14	1	-17.4521
chr13	73498007	73498036	DNA	MER2	MER2_type	chr13MER273497885	NonProperStrand	2	chr17	39846353	39846411	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr16	28885845	28885874	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	chr5	92116408	92116510	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-8.0153
chr1	84844550	84844650	protein_coding-noncoding	Fbxo36	utr5	ENSMUSG00000073633	NonProperStrand	1	chr1	84844727	84844817	protein_coding	Fbxo36	intron	ENSMUSG00000073633	NonProperStrand	31	1	-inf
chr6	125168178	125169829	protein_coding	Vamp1	exon	ENSMUSG00000030337	NonProperStrand	41	chr6	125179513	125181124	protein_coding	Tapbpl	intron	ENSMUSG00000038213	ProperStrand	61	2	-20.6379
chr13	119441157	119441247	LINE	L1Md_F2	L1	chr13L1Md_F2119441072	ProperStrand	1	chr13	119440988	119441088	LTR	MTA_Mm	MaLR	chr13MTA_Mm119440674	ProperStrand	1	1	-inf
chr17	39847244	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	4379938	4380017	protein_coding	8430410K20Rik	intron	ENSMUSG00000041124	ProperStrand	5	1	-4.3348
chr1	39548786	39548853	LINE	Lx5	L1	chr1Lx539548764	NonProperStrand	5	chr17	39846579	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr8	83719566	83719874	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int83719268	ProperStrand	3	chr5	130284505	130284521	protein_coding	Psph	intron	ENSMUSG00000029446	ProperStrand	2	1	-20.2824
chrX	23803088	23803183	LINE	Lx3C	L1	chrXLx3C23802276	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr2	48849128	48849178	protein_coding	Mbd5	intron	ENSMUSG00000036792	ProperStrand	50	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.8431
chr10	77988902	77989603	LTR	RLTR26	ERVK	chr10RLTR2677988776	ProperStrand	5	chr17	39846450	39846808	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chrX	101081712	101081940	LINE	L1_Mm	L1	chrXL1_Mm101081590	NonProperStrand	8	chr5	118712642	118712666	protein_coding	2410131K14Rik	utr3	ENSMUSG00000032840	ProperStrand	127	1	-14.6685
chr10	112787851	112787870	LTR	MLT1A0-int	MaLR	chr10MLT1A0-int112787402	NonProperStrand	3	chr17	39847440	39847526	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr2	22744886	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	44278631	44278653	LINE	L1_Mur2	L1	chr6L1_Mur244278615	ProperStrand	1	1	-inf
chr12	44990970	44991070	LINE	L1Md_T	L1	chr12L1Md_T44987430	NonProperStrand	3	chr17	39847863	39847979	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-inf
chr17	39846301	39847943	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	110281271	110281367	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	58	-7.1106
chr10	76551216	76551258	protein_coding	Col18a1	intron	ENSMUSG00000001435	NonProperStrand	68	chr6	86851125	86851197	protein_coding	Aak1	intron	ENSMUSG00000057230	ProperStrand	54	1	-11.9830
chr5	143037961	143038061	LTR	RLTR11A	ERVK	chr5RLTR11A143037807	NonProperStrand	4	chr5	143038117	143038208	SINE	RSINE1	B4	chr5RSINE1143038122	ProperStrand	3	3	-inf
chr8	123103032	123103105	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	chr12	17743588	17743635	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-6.0391
chr15	65537666	65537766	LINE	Lx2B	L1	chr15Lx2B65537301	NonProperStrand	1	chr15	65537854	65537944	LTR	MTD	MaLR	chr15MTD65537836	NonProperStrand	1	1	-inf
chr19	10902749	10903012	protein_coding	Cd6	intron	ENSMUSG00000024670	NonProperStrand	8	chr11	120578127	120578202	protein_coding	Lrrc45	intron	ENSMUSG00000025145	NonProperStrand	47	1	-16.6892
chr6	101857378	101857468	LINE	L1_Mus3	L1	chr6L1_Mus3101857327	NonProperStrand	1	chr6	101856702	101856802	SINE	B1_Mur2	Alu	chr6B1_Mur2101856681	NonProperStrand	1	1	-inf
chr4	153960638	153960738	protein_coding	Prdm16	intron	ENSMUSG00000039410	ProperStrand	43	chr11	58097263	58097353	protein_coding	4930438A08Rik	intron	ENSMUSG00000069873	ProperStrand	12	1	-15.9949
chr13	89611360	89611378	LINE	L1Md_F2	L1	chr13L1Md_F289611043	NonProperStrand	1	chr17	39847277	39847319	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	32730889	32730981	protein_coding	Casp8ap2	exon	ENSMUSG00000028282	ProperStrand	52	chr10	69941397	69941464	protein_coding	Fam13c	intron	ENSMUSG00000043259	ProperStrand	75	2	-18.4784
chr1	82742500	82742540	protein_coding	Mff	intron	ENSMUSG00000026150	ProperStrand	14	chr5	97456576	97456594	protein_coding	Bmp2k	intron	ENSMUSG00000034663	NonProperStrand	1	1	-inf
chr8	48542382	48542470	LINE	Lx5	L1	chr8Lx548542373	ProperStrand	2	chr8	48542245	48542345	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n48542264	NonProperStrand	2	2	-inf
chr18	31677045	31677145	SINE	B3	B2	chr18B331677008	ProperStrand	1	chr18	31676844	31676934	SINE	RSINE1	B4	chr18RSINE131676849	ProperStrand	1	1	-inf
chr17	39846580	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	88329619	88329635	SINE	ID_B1	B4	chr3ID_B188329505	NonProperStrand	1	1	-inf
chrX	74230369	74230508	LINE	MusHAL1	L1	chrXMusHAL174230289	NonProperStrand	3	chrX	106199752	106200240	protein_coding	Hmgn5	utr3	ENSMUSG00000031245	NonProperStrand	68	2	-19.8299
chr9	100788876	100788931	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	chr2	5379294	5379344	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-6.6180
chr17	39848183	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	20909593	20909707	protein_coding	Paqr8	intron	ENSMUSG00000025931	ProperStrand	6	1	-5.7734
chr2	160257577	160257677	SINE	B1F	Alu	chr2B1F160257556	NonProperStrand	1	chr2	160257691	160257781	SINE	ID_B1	B4	chr2ID_B1160257700	NonProperStrand	1	1	-inf
chr5	125404247	125404286	Low_complexity	AT_rich	Low_complexity	chr5AT_rich125404251	NonProperStrand	6	chr9	110281288	110281316	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-12.3138
chr5	104462745	104462794	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm104462488	NonProperStrand	2	chr13	97190561	97190582	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr2	90395137	90395174	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr10	86339853	86339880	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	81	1	-9.1193
chr4	141151221	141151264	protein_coding	Fblim1	exon	ENSMUSG00000006219	NonProperStrand	30	chr6	71794012	71794048	protein_coding	Immt	intron	ENSMUSG00000052337	NonProperStrand	25	1	-15.2063
chr17	39847636	39847683	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	94831863	94832539	SINE	B2_Mm1a	B2	chr8B2_Mm1a94831834	NonProperStrand	7	2	-4.7560
chr5	115489548	115489579	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr2	30151626	30151693	protein_coding	Phyhd1	intron	ENSMUSG00000079484	ProperStrand	34	1	-10.2998
chr17	39847174	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	77053892	77053966	SINE	MIR3	MIR	chr18MIR377053814	ProperStrand	1	1	-inf
chr2	175061921	175062011	LTR	RLTR20B1	ERVK	chr2RLTR20B1175061516	NonProperStrand	2	chr16	91740730	91740830	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	1	-17.6293
chr4	120756746	120756854	protein_coding	Zmpste24	intron	ENSMUSG00000043207	ProperStrand	22	chr9	121855250	121855284	protein_coding	1700048O20Rik	utr3	ENSMUSG00000043773	NonProperStrand	13	2	-inf
chr7	126387637	126387696	SINE	PB1D7	Alu	chr7PB1D7126387649	ProperStrand	1	chr5	142904751	142904782	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-inf
chr19	5796772	5796862	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr12	54696903	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	2	-5.0655
chr13	97190574	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr12	82325006	82325070	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	1	-3.8819
chr9	59663306	59663401	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr16	13996197	13996253	protein_coding	2900011O08Rik	intron	ENSMUSG00000044117	ProperStrand	41	1	-7.0447
chr19	21782020	21782110	LINE	L1VL4	L1	chr19L1VL421781544	ProperStrand	4	chr17	39846392	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr11	20063653	20063678	SINE	B1_Mus1	Alu	chr11B1_Mus120063653	NonProperStrand	2	chr9	69364395	69364452	SINE	ID_B1	B4	chr9ID_B169364208	NonProperStrand	1	1	-inf
chr13	87415265	87415286	LINE	L1Md_F2	L1	chr13L1Md_F287414213	ProperStrand	1	chr5	140247519	140247585	protein_coding	Ints1	exon	ENSMUSG00000029547	ProperStrand	67	1	-inf
chr10	83436243	83436315	LTR	MTD	MaLR	chr10MTD83436238	ProperStrand	1	chr17	39846932	39846994	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	117615994	117616089	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr13	36500619	36500673	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	1	-3.1994
chr2	153305312	153305402	protein_coding-noncoding	8430427H17Rik	utr3	ENSMUSG00000061411	NonProperStrand	2	chr2	153305424	153305524	protein_coding	8430427H17Rik	intron	ENSMUSG00000061411	NonProperStrand	56	2	-inf
chr10	30811155	30811214	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr17	85081097	85081174	protein_coding	Abcg5	intron	ENSMUSG00000040505	ProperStrand	18	2	-inf
chr1	38527294	38527343	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	chr7	68362566	68362585	protein_coding	A230006K03Rik	intron	ENSMUSG00000078690	ProperStrand	6	1	-14.7509
chr9	82802658	82802758	protein_coding	Phip	intron	ENSMUSG00000032253	NonProperStrand	10	chr9	82097317	82097407	protein_coding	Mei4	intron	ENSMUSG00000043289	ProperStrand	34	1	-16.8504
chr2	49649336	49649399	protein_coding	Lypd6b	intron	ENSMUSG00000026765	ProperStrand	54	chr9	94686428	94686445	protein_coding	Slc9a9	intron	ENSMUSG00000031129	ProperStrand	16	1	-14.9244
chr11	69989523	69989977	LTR	ORR1D1	MaLR	chr11ORR1D169989404	ProperStrand	2	chr13	97190572	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr5	146261243	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr11	48800406	48800497	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-8.6193
chr19	30060046	30060130	SINE	B4A	B4	chr19B4A30060036	NonProperStrand	1	chr1	38024544	38024575	SINE	B2_Mm1t	B2	chr1B2_Mm1t38024494	NonProperStrand	1	1	-inf
chr18	80085028	80085118	LINE	Lx8	L1	chr18Lx880084900	NonProperStrand	2	chr18	80085130	80085230	SINE	B3	B2	chr18B380085148	NonProperStrand	2	2	-inf
chr3	104882646	104882665	LTR	MTA_Mm	MaLR	chr3MTA_Mm104882557	NonProperStrand	4	chr2	5379314	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.1399
chr17	83403907	83403989	LINE	L1MDa	L1	chr17L1MDa83403818	ProperStrand	2	chr17	83404791	83404844	LINE	Lx9	L1	chr17Lx983404753	ProperStrand	2	1	-19.8939
chr15	53293205	53293305	protein_coding-noncoding	Samd12	utr3	ENSMUSG00000058656	ProperStrand	2	chr15	53293385	53293475	protein_coding	Samd12	utr3	ENSMUSG00000058656	ProperStrand	377	1	-15.8208
chr17	39847026	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	70844806	70844825	protein_coding	Eif2ak3	intron	ENSMUSG00000031668	NonProperStrand	1	1	-inf
chr17	25157298	25157388	protein_coding	Ift140	intron	ENSMUSG00000024169	ProperStrand	55	chr16	19883804	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.0763
chr19	36859922	36860012	LINE	Lx4A	L1	chr19Lx4A36859380	NonProperStrand	3	chr19	36860020	36860120	LINE	Lx4A	L1	chr19Lx4A36859380	ProperStrand	1	1	-inf
chr10	70173424	70173524	LINE	L1MB8	L1	chr10L1MB870173207	NonProperStrand	1	chr17	39847803	39847893	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	103476588	103476606	LINE	L1_Mus1	L1	chrXL1_Mus1103476100	NonProperStrand	1	chrX	103477592	103477621	pseudogene	Gm14857	.	ENSMUSG00000081289	NonProperStrand	17	1	-inf
chr3	133528110	133528153	LINE	Lx	L1	chr3Lx133527764	NonProperStrand	4	chr17	39847010	39847063	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr1	20817266	20817343	LTR	ORR1C2	MaLR	chr1ORR1C220817183	NonProperStrand	3	chr1	20808743	20808783	protein_coding	Mcm3	intron	ENSMUSG00000041859	ProperStrand	38	1	-19.2637
chr16	4602232	4602297	protein_coding	Glis2	intron	ENSMUSG00000014303	ProperStrand	79	chr8	18760997	18761035	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-6.3650
chr2	157837404	157837494	protein_coding	Tti1	intron	ENSMUSG00000027650	NonProperStrand	64	chr2	157864641	157864741	protein_coding	Rprd1b	intron	ENSMUSG00000027651	ProperStrand	72	1	-11.5260
chr17	39847891	39847920	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	39758845	39758909	protein_coding	Mrps33	intron	ENSMUSG00000029918	NonProperStrand	1	1	-inf
chr14	26503100	26503200	DNA	Ricksha	MuDR	chr14Ricksha26502518	NonProperStrand	2	chr17	39846931	39847021	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr6	87997232	87997259	SINE	B1_Mur4	Alu	chr6B1_Mur487997219	ProperStrand	15	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	2	-14.9111
chr12	78350922	78350999	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr9	65689542	65689609	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	1	-5.2385
chr16	11202878	11202933	protein_coding	Rsl1d1	intron	ENSMUSG00000005846	ProperStrand	13	chr9	123461840	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-6.6227
chr17	55672722	55672781	LINE	Lx3A	L1	chr17Lx3A55671987	ProperStrand	2	chr17	39846786	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr5	146260994	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	mmu-miR-6238	2	22	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	5	-inf
chr17	39846428	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	58955050	58955180	SINE	B1_Mus1	Alu	chr11B1_Mus158955035	ProperStrand	3	2	-8.0300
chr1	55007667	55012152	LTR	MLT1A0	MaLR	chr1MLT1A055011634	NonProperStrand	1	chr1	55012199	55014499	LTR	MLT1A0	MaLR	chr1MLT1A055012106	NonProperStrand	8	1	-inf
chr10	8752541	8752653	LINE	L1_Mus1	L1	chr10L1_Mus18752562	NonProperStrand	6	chr10	8752424	8752525	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n8752403	NonProperStrand	7	5	-inf
chr12	78350933	78351044	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr4	33458214	33458258	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	100	1	-4.9014
chr2	5794384	5794474	protein_coding	Sec61a2	intron	ENSMUSG00000025816	ProperStrand	23	chr2	180244320	180244420	protein_coding	Ntsr1	intron	ENSMUSG00000027568	NonProperStrand	24	3	-inf
chr17	39846462	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	118399789	118399870	SINE	B3A	B2	chr9B3A118399768	ProperStrand	2	1	-5.3533
chr12	78350926	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	56188723	56188739	protein_coding	Senp7	utr3	ENSMUSG00000052917	NonProperStrand	16	1	-8.5500
chr10	110255047	110255147	LTR	MTA_Mm	MaLR	chr10MTA_Mm110254994	ProperStrand	1	chr10	110254610	110254700	LTR	RLTR28	ERVL	chr10RLTR28110254352	NonProperStrand	1	1	-inf
chr2	137717013	137717029	LINE	L1Md_T	L1	chr2L1Md_T137714579	ProperStrand	2	chr2	37669653	37669774	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	1	-16.0366
chr17	39846989	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	45517400	45517734	LTR	MT2A	ERVL	chr17MT2A45517356	NonProperStrand	1	1	-inf
chr19	5797794	5797870	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	53357748	53357801	protein_coding	Sept8	intron	ENSMUSG00000018398	ProperStrand	12	1	-7.6418
chr8	69774571	69774643	LINE	Lx4B	L1	chr8Lx4B69774550	ProperStrand	1	chr17	39845943	39845965	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr4	52685905	52685995	LINE	Lx4B	L1	chr4Lx4B52685855	ProperStrand	1	chr4	52685701	52685801	LINE	Lx5	L1	chr4Lx552685554	ProperStrand	1	1	-inf
chrX	100876521	100876611	LINE	Lx5	L1	chrXLx5100876311	NonProperStrand	1	chrX	100876623	100876723	Other	RMER1A	Other	chrXRMER1A100876610	NonProperStrand	1	1	-inf
chr4	62610895	62610971	LTR	MTC	MaLR	chr4MTC62610880	NonProperStrand	1	chr4	62610792	62610849	LTR	ORR1B2	MaLR	chr4ORR1B262610563	NonProperStrand	1	1	-inf
chr8	25100730	25157095	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	chr13	97190552	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-4.4231
chr15	61673953	61674072	LINE	L2	L2	chr15L261673935	ProperStrand	1	chr4	141468948	141468964	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	1	-inf
chr2	29773454	29773520	protein_coding-noncoding	Odf2	utr5	ENSMUSG00000026790	NonProperStrand	12	chr2	29770083	29770155	protein_coding	Odf2	intron	ENSMUSG00000026790	NonProperStrand	58	2	-inf
chrX	12987872	12987888	LTR	MERVL_2A-int	ERVL	chrXMERVL_2A-int12987517	NonProperStrand	1	chr16	35563800	35563868	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	1	-inf
chr11	69667886	69667976	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr6	5087631	5087689	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-6.1211
chr17	39846453	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	mmu-miR-690	6	22	miRNA	mmu-miR-690	.	mmu-miR-690	ProperStrand	5	1	-3.1907
chr17	55681852	55681952	LINE	L1Md_A	L1	chr17L1Md_A55677008	NonProperStrand	1	chr11	12444167	12444257	LTR	RMER17C	ERVK	chr11RMER17C12443963	ProperStrand	5	1	-inf
chr2	23073772	23073849	protein_coding	4931423N10Rik	intron	ENSMUSG00000026774	ProperStrand	16	chr3	94501345	94501407	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-14.6761
chr11	70390780	70390816	protein_coding	Mink1	intron	ENSMUSG00000020827	NonProperStrand	53	chr1	43113796	43113918	protein_coding	Tgfbrap1	intron	ENSMUSG00000070939	NonProperStrand	25	1	-14.0475
chr13	97109705	97109761	LINE	Lx6	L1	chr13Lx697109377	ProperStrand	1	chr19	28495047	28495084	protein_coding	Glis3	intron	ENSMUSG00000052942	ProperStrand	174	1	-inf
chr17	39846462	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	73953728	73953821	LTR	MTD	MaLR	chr1MTD73953494	ProperStrand	2	2	-inf
chr17	39843506	39843535	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr1	66836669	66836745	protein_coding	1110028C15Rik	intron	ENSMUSG00000026004	ProperStrand	12	1	-5.6158
chr5	32829714	32829758	antisense	Gm15614	.	ENSMUSG00000085234	ProperStrand	28	chr3	133005384	133005439	protein_coding	Ppa2	intron	ENSMUSG00000028013	NonProperStrand	29	1	-15.0362
chr9	31201303	31201393	protein_coding-noncoding	Nfrkb	utr5	ENSMUSG00000042185	NonProperStrand	3	chr8	107006481	107006502	protein_coding	Ccdc79	intron	ENSMUSG00000052616	NonProperStrand	63	1	-18.3494
chr1	171503045	171503071	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr7	81343165	81343251	LTR	MTC	MaLR	chr7MTC81342988	NonProperStrand	5	1	-18.3660
chr1	179226764	179226864	SINE	B1F	Alu	chr1B1F179226785	ProperStrand	3	chr1	179372049	179372139	lincRNA	Gm17407	intron	ENSMUSG00000078909	ProperStrand	35	3	-inf
chr7	100848545	100848635	LINE	L1Md_T	L1	chr7L1Md_T100847958	NonProperStrand	1	chr7	100848704	100848804	LTR	MTA_Mm	MaLR	chr7MTA_Mm100848621	ProperStrand	1	1	-inf
chr17	39847216	39847332	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	125162322	125162526	SINE	B3	B2	chr6B3125162279	ProperStrand	16	2	-3.8817
chr17	39847160	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	32219878	32222050	pseudogene	Pdxk-ps	.	ENSMUSG00000002791	ProperStrand	20	2	-3.2818
chr7	126174241	126199952	LINE	L1Md_A	L1	chr7L1Md_A126193264	ProperStrand	5	chr17	39847439	39847535	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr9	123462019	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	102193177	102193195	protein_coding	Lmo7	intron	ENSMUSG00000033060	NonProperStrand	6	1	-5.4370
chr16	86869719	86869809	LTR	MLT1F2	MaLR	chr16MLT1F286869707	ProperStrand	1	chr16	86869116	86869216	LTR	RMER20B	ERVK	chr16RMER20B86868948	NonProperStrand	1	1	-inf
chr17	39847562	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	17451200	17451278	SINE	B1_Mus1	Alu	chr16B1_Mus117451207	NonProperStrand	1	1	-inf
chr3	79821668	79821764	LINE	L1Md_A	L1	chr3L1Md_A79817105	ProperStrand	1	chr17	39846817	39846835	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	31043052	31043103	LINE	Lx	L1	chr3Lx31042351	ProperStrand	3	chr3	122292942	122292981	protein_coding	Fnbp1l	intron	ENSMUSG00000039735	ProperStrand	6	1	-inf
chr17	39847674	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr13	44869963	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-9.1135
chr16	76376076	76376117	SINE	RSINE1	B4	chr16RSINE176376084	ProperStrand	1	chr7	133063800	133063851	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr12	4783527	4783627	protein_coding	Pfn4	intron	ENSMUSG00000020639	ProperStrand	3	chr15	99037928	99038018	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	1	-18.4369
chr17	39847183	39847270	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	38623414	38623447	protein_coding	Clec2l	intron	ENSMUSG00000079598	ProperStrand	4	1	-4.8204
chr16	35332999	35333036	protein_coding	Sec22a	intron	ENSMUSG00000034473	ProperStrand	38	chr7	98175205	98175302	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-8.3410
chr12	76916561	76916651	SINE	ID4	ID	chr12ID476916569	NonProperStrand	9	chr12	76916728	76916828	SINE	ID_B1	B4	chr12ID_B176916728	ProperStrand	11	9	-inf
chr1	190810671	190810705	protein_coding	Kctd3	intron	ENSMUSG00000026608	ProperStrand	35	chr7	127803224	127803268	protein_coding	Pdzd9	utr3	ENSMUSG00000030887	NonProperStrand	2	1	-19.9529
chr4	41712168	41712258	protein_coding-noncoding	Il11ra1	utr5	ENSMUSG00000073889	NonProperStrand	2	chr4	41712048	41712148	protein_coding	Il11ra1	intron	ENSMUSG00000073889	NonProperStrand	5	2	-inf
chr17	39847244	39847354	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	8697600	8697621	protein_coding-noncoding	Usp7	utr3	ENSMUSG00000022710	ProperStrand	5	1	-4.3348
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr6	66901299	66901430	protein_coding	Gng12	intron	ENSMUSG00000036402	ProperStrand	67	1	-9.5861
chr11	115580576	115580943	SINE	B2_Mm1a	B2	chr11B2_Mm1a115580647	ProperStrand	4	chr11	115578796	115578886	SINE	B3	B2	chr11B3115578736	ProperStrand	6	3	-inf
chr17	39845361	39845384	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	35594398	35594469	protein_coding	Chst8	intron	ENSMUSG00000060402	NonProperStrand	15	1	-4.7983
chr6	72424841	72424931	SINE	B1_Mus2	Alu	chr6B1_Mus272424790	ProperStrand	2	chr6	72424931	72425031	SINE	B4	B4	chr6B472424953	ProperStrand	2	2	-inf
chr18	74535569	74535669	LTR	LTRIS3	ERV1	chr18LTRIS374535290	ProperStrand	1	chr18	74535686	74535776	LTR	MERVK26-int	ERVK	chr18MERVK26-int74535709	NonProperStrand	1	1	-inf
chr10	86027281	86027371	LINE	L1Md_T	L1	chr10L1Md_T86024351	ProperStrand	1	chr10	86027431	86027531	LINE	L1Md_T	L1	chr10L1Md_T86027302	ProperStrand	1	1	-inf
chr7	23579855	23579945	LTR	RLTR4_MM-int	ERV1	chr7RLTR4_MM-int23579688	ProperStrand	1	chr7	23579696	23579796	LTR	RNERVK23-int	ERVK	chr7RNERVK23-int23579441	ProperStrand	1	1	-inf
chr2	24334007	24334097	antisense	Gm13415	.	ENSMUSG00000085057	ProperStrand	2	chr2	21571625	21571725	protein_coding	Gpr158	intron	ENSMUSG00000045967	ProperStrand	11	1	-21.2279
chr17	39843000	39843039	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr14	69787009	69787028	antisense	1700092C10Rik	.	ENSMUSG00000092499	ProperStrand	10	1	-9.0031
chr2	29158259	29158938	LINE	L1Md_T	L1	chr2L1Md_T29153854	NonProperStrand	4	chr9	123461822	123461876	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr8	104439725	104439825	LTR	MLT1B-int	MaLR	chr8MLT1B-int104439281	NonProperStrand	3	chr8	104439849	104439939	LTR	RMER20B	ERVK	chr8RMER20B104439861	ProperStrand	3	3	-inf
chr9	80286429	80288058	protein_coding	Impg1	intron	ENSMUSG00000032343	NonProperStrand	24	chr7	3158607	3158651	protein_coding	AU018091	exon	ENSMUSG00000054753	ProperStrand	34	1	-15.0376
chr10	95381234	95381271	Simple_repeat	(CCCCCT)n	Simple_repeat	chr10(CCCCCT)n95381235	NonProperStrand	2	chr1	72226315	72226362	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	2	-inf
chr2	90860471	90861394	SINE	PB1D10	Alu	chr2PB1D1090860474	NonProperStrand	1	chr2	90856853	90859561	protein_coding	Celf1	utr3	ENSMUSG00000005506	ProperStrand	35	1	-inf
chr19	5796480	5796522	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr7	26418347	26418455	protein_coding	Bckdha	intron	ENSMUSG00000060376	NonProperStrand	17	1	-6.9278
chr2	69184453	69184535	LINE	Lx8	L1	chr2Lx869184236	NonProperStrand	1	chr13	107751740	107751812	protein_coding	Kif2a	utr3	ENSMUSG00000021693	ProperStrand	61	1	-inf
chr3	153529498	153536560	protein_coding	Msh4	intron	ENSMUSG00000005493	ProperStrand	30	chr9	123462082	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.1898
chr9	15029249	15029349	LINE	L1_Mur2	L1	chr9L1_Mur215028946	NonProperStrand	2	chr9	15029394	15029484	LTR	RMER16	ERVK	chr9RMER1615029388	NonProperStrand	2	2	-inf
chr2	44714619	44714667	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	85	chr9	59671946	59672042	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-5.6042
chr10	66386447	66386537	SINE	B3	B2	chr10B366386406	ProperStrand	1	chr10	66386094	66386194	lincRNA	Gm17351	exon	ENSMUSG00000091024	NonProperStrand	1	1	-inf
chr3	68949578	68949651	LINE	L1Md_A	L1	chr3L1Md_A68947859	ProperStrand	1	chr17	39846787	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846642	39846736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	28885746	28885762	protein_coding	Fcgbp	intron	ENSMUSG00000047730	ProperStrand	4	1	-3.6552
chr17	39846816	39846917	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	138309270	138311771	protein_coding	Pilrb2	intron	ENSMUSG00000066682	NonProperStrand	5	1	-3.1907
chr2	29777411	29777467	protein_coding	Odf2	intron	ENSMUSG00000026790	NonProperStrand	58	chr5	90244339	90244385	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	2	-18.3724
chr1	65345310	65345328	protein_coding	Pth2r	intron	ENSMUSG00000025946	ProperStrand	8	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.5479
chr5	31058772	31058990	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr8	70895758	70895841	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-8.2897
chr3	146521240	146521320	protein_coding	Ttll7	intron	ENSMUSG00000036745	NonProperStrand	7	chr17	37010192	37010266	protein_coding	Trim10	intron	ENSMUSG00000073400	ProperStrand	39	1	-17.3501
chr16	35714032	35714094	protein_coding	Dirc2	intron	ENSMUSG00000022848	ProperStrand	31	chr4	21803561	21803585	protein_coding	Sfrs18	utr3	ENSMUSG00000028248	ProperStrand	9	1	-17.2768
chr4	142170470	142170501	SINE	MIR	MIR	chr4MIR142170435	ProperStrand	4	chr17	39843592	39843633	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-7.9732
chr5	79401878	79401968	LINE	Lx3A	L1	chr5Lx3A79401431	ProperStrand	1	chr5	79402168	79402268	LINE	Lx3A	L1	chr5Lx3A79402002	ProperStrand	1	1	-inf
chr11	66805740	66805830	LTR	LTR33	ERVL	chr11LTR3366805729	NonProperStrand	1	chr11	66805518	66805618	SINE	MIR	MIR	chr11MIR66805507	NonProperStrand	1	1	-inf
chr9	44342025	44342052	DNA	MER5A	MER1_type	chr9MER5A44341977	ProperStrand	2	chr9	44342051	44344090	LINE	Lx8	L1	chr9Lx844343788	NonProperStrand	1	1	-inf
chr12	80241092	80241137	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr8	106735843	106735954	protein_coding	Bean1	intron	ENSMUSG00000031872	ProperStrand	66	1	-9.6836
chr17	35157159	35157404	protein_coding	D17H6S56E-3	intron	ENSMUSG00000007030	NonProperStrand	151	chr9	75388823	75388843	protein_coding	Tmod3	intron	ENSMUSG00000058587	ProperStrand	73	1	-9.7763
chr9	100488021	100488056	LINE	Lx	L1	chr9Lx100486689	ProperStrand	2	chr9	100488223	100488314	LINE	Lx	L1	chr9Lx100488205	ProperStrand	1	1	-inf
chr17	39845302	39845849	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr4	43492782	43492909	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	15	-6.7656
chr11	7850416	7850516	SINE	B1_Mur3	Alu	chr11B1_Mur37850414	ProperStrand	1	chr11	7850300	7850390	SINE	B3	B2	chr11B37850223	ProperStrand	1	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr8	18789226	18789322	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-6.7205
chr16	51605844	51605944	LINE	L1Md_F2	L1	chr16L1Md_F251605408	NonProperStrand	1	chr3	15557823	15557913	protein_coding	Sirpb1b	intron	ENSMUSG00000078781	NonProperStrand	4	1	-inf
chr10	81543184	81543284	LTR	RMER20B	ERVK	chr10RMER20B81543097	ProperStrand	8	chr10	81543285	81543375	Unknown	MurSatRep1	Unknown	chr10MurSatRep181543293	ProperStrand	8	8	-inf
chr1	89851647	89851753	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-7.7276
chr17	39847511	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	129795650	129795760	protein_coding	Pef1	intron	ENSMUSG00000028779	ProperStrand	5	1	-3.2379
chr13	76942369	76942390	protein_coding	Mctp1	intron	ENSMUSG00000021596	ProperStrand	14	chr18	57390545	57390576	protein_coding	Megf10	intron	ENSMUSG00000024593	ProperStrand	45	1	-15.5562
chr18	25293322	25293338	protein_coding	5730494M16Rik	intron	ENSMUSG00000024269	ProperStrand	6	chr4	116615541	116615664	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-15.0089
chr12	78862131	78866551	LTR	MLT1H	MaLR	chr12MLT1H78861987	ProperStrand	1	chr17	39847223	39847245	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr15	101416296	101416396	LTR	MT2A	ERVL	chr15MT2A101416227	ProperStrand	1	chr15	101416123	101416213	LTR	MTEa	MaLR	chr15MTEa101416050	ProperStrand	1	1	-inf
chr11	104699015	104699083	LINE	L1_Mur1	L1	chr11L1_Mur1104698027	NonProperStrand	1	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr18	74591344	74591378	SINE	PB1D10	Alu	chr18PB1D1074591346	ProperStrand	1	chr18	74593011	74593047	SINE	RSINE1	B4	chr18RSINE174592945	NonProperStrand	1	1	-inf
chr1	156063672	156064740	LINE	L1MA4	L1	chr1L1MA4156064197	NonProperStrand	1	chr1	156063604	156063655	LTR	MTC	MaLR	chr1MTC156063595	NonProperStrand	3	1	-inf
chrX	102323117	102323170	LINE	L1_Mus1	L1	chrXL1_Mus1102323057	NonProperStrand	1	chr8	71545884	71545947	SINE	B1F	Alu	chr8B1F71545795	ProperStrand	1	1	-inf
chr3	58598218	58598263	lincRNA	4930593A02Rik	intron	ENSMUSG00000087019	ProperStrand	27	chr14	7843225	7843282	protein_coding	Gm10406	exon	ENSMUSG00000072735	NonProperStrand	205	1	-11.1726
chr13	66320032	66320104	LINE	L1Md_T	L1	chr13L1Md_T66316404	ProperStrand	1	chr17	39843454	39843491	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr15	51961601	51961701	LINE	L1Md_A	L1	chr15L1Md_A51956751	NonProperStrand	8	chr6	148203398	148203488	protein_coding	Tmtc1	intron	ENSMUSG00000030306	ProperStrand	64	1	-16.0398
chr2	131271496	131271524	LTR	RMER19C	ERVK	chr2RMER19C131271500	ProperStrand	1	chr11	83574432	83574476	protein_coding	Heatr6	exon	ENSMUSG00000000976	NonProperStrand	2	1	-inf
chr4	52451312	52457286	antisense	2700081L22Rik	.	ENSMUSG00000085763	NonProperStrand	4	chr4	52457308	52457408	protein_coding	Smc2	intron	ENSMUSG00000028312	ProperStrand	32	1	-18.8293
chr1	138994389	138994489	LTR	MTC	MaLR	chr1MTC138994406	ProperStrand	1	chr1	138994611	138994701	Simple_repeat	(CCTTG)n	Simple_repeat	chr1(CCTTG)n138994636	NonProperStrand	1	1	-inf
chr5	30060669	30060773	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr7	47186397	47186514	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	2	-inf
chr12	109572518	109572608	Low_complexity	G-rich	Low_complexity	chr12G-rich109572394	ProperStrand	2	chr12	109572633	109572733	protein_coding	Cyp46a1	utr5	ENSMUSG00000021259	ProperStrand	108	2	-inf
chr19	24526598	24526627	protein_coding	Pip5k1b	intron	ENSMUSG00000024867	ProperStrand	56	chr7	120920277	120920384	protein_coding	Spon1	intron	ENSMUSG00000038156	ProperStrand	96	1	-11.2166
chr17	35837996	35838035	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr15	85053815	85058753	protein_coding	Fbln1	intron	ENSMUSG00000006369	ProperStrand	20	1	-11.5379
chr6	38570517	38585043	LTR	ORR1A2-int	MaLR	chr6ORR1A2-int38569315	NonProperStrand	5	chr6	38585042	38589178	protein_coding	Klrg2	intron	ENSMUSG00000071537	NonProperStrand	8	3	-21.8124
chr17	39843819	39843909	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr18	3414149	3414219	protein_coding	Cul2	exon	ENSMUSG00000024231	ProperStrand	14	1	-5.7669
chr4	53860733	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr11	120112586	120112674	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	136	1	-7.7918
chr19	10533360	10533460	SINE	B1F	Alu	chr19B1F10533310	ProperStrand	1	chr19	10532866	10533325	SINE	MIR	MIR	chr19MIR10532814	NonProperStrand	1	1	-inf
chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr11	44539536	44539576	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	1	-4.5469
chr17	39843739	39843761	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr7	113226306	113226338	processed_transcript	RP23-466I14.1	.	ENSMUSG00000093378	ProperStrand	23	1	-4.7802
chr9	108327651	108327687	protein_coding	Ccdc36	intron	ENSMUSG00000047220	NonProperStrand	33	chr15	53150751	53150838	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	1	-11.8883
chr9	58230890	58231017	LINE	L1MEf	L1	chr9L1MEf58230883	ProperStrand	12	chr9	58230790	58230894	SINE	B1_Mur2	Alu	chr9B1_Mur258230742	ProperStrand	9	9	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr15	78511965	78512020	protein_coding	Elfn2	intron	ENSMUSG00000043460	NonProperStrand	4	1	-12.4656
chr5	146261022	146261224	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	102829372	102829447	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	3	-7.7540
chr5	148556706	148556796	LTR	RLTR10D	ERVK	chr5RLTR10D148556732	NonProperStrand	1	chr5	148556887	148556987	LTR	RLTR10D	ERVK	chr5RLTR10D148556861	NonProperStrand	1	1	-inf
chr10	117687620	117687670	LTR	MuRRS-int	ERV1	chr10MuRRS-int117684498	ProperStrand	5	chr1	171447358	171447422	protein_coding	Nuf2	intron	ENSMUSG00000026683	NonProperStrand	17	1	-19.2464
chr17	39848124	39848200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	2	-3.1448
chr1	69838098	69838226	LINE	L1_Mus3	L1	chr1L1_Mus369838043	NonProperStrand	1	chr1	189126290	189126308	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-inf
chr17	71641584	71641659	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	chr12	7997254	7997303	protein_coding	Apob	intron	ENSMUSG00000020609	NonProperStrand	5	1	-15.5504
chr3	41110774	41110864	LINE	Lx9	L1	chr3Lx941110285	NonProperStrand	1	chr3	41110381	41110481	LINE	Lx9	L1	chr3Lx941110285	ProperStrand	1	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr13	59857148	59857222	protein_coding	Isca1	utr3	ENSMUSG00000044792	NonProperStrand	1	1	-inf
chr15	76777222	76777277	LTR	MT-int	MaLR	chr15MT-int76776989	NonProperStrand	1	chr15	76780964	76781065	protein_coding	1110038F14Rik	utr3	ENSMUSG00000063236	NonProperStrand	11	1	-inf
chrX	159816609	159816626	LINE	L2b	L2	chrXL2b159816467	NonProperStrand	1	chr5	134624279	134624411	protein_coding	Wbscr16	utr3	ENSMUSG00000061979	ProperStrand	39	1	-inf
chr19	42021713	42025785	protein_coding-noncoding	Mms19	utr3	ENSMUSG00000025159	NonProperStrand	8	chr19	42021579	42025882	protein_coding	Mms19	intron	ENSMUSG00000025159	NonProperStrand	14	6	-19.6956
chrX	37083988	37084041	LINE	Lx3C	L1	chrXLx3C37083989	ProperStrand	4	chrX	37082701	37083988	LINE	Lx9	L1	chrXLx937082407	ProperStrand	11	1	-inf
chr11	88049980	88050070	LTR	MLT1D	MaLR	chr11MLT1D88049920	NonProperStrand	3	chr11	88050075	88051056	SINE	B1_Mur4	Alu	chr11B1_Mur488050959	ProperStrand	3	2	-20.2273
chr11	87893279	87893369	protein_coding	Vezf1	intron	ENSMUSG00000018377	NonProperStrand	1	chr11	114717019	114717119	protein_coding	Gprc5c	intron	ENSMUSG00000051043	ProperStrand	17	1	-inf
chr18	45857629	45857651	LINE	Lx8	L1	chr18Lx845856661	ProperStrand	1	chr6	83106075	83106178	protein_coding	Wdr54	utr5	ENSMUSG00000030032	NonProperStrand	9	1	-inf
chr9	27038402	27038427	DNA	URR1B	MER1_type	chr9URR1B27038376	ProperStrand	2	chr9	27039044	27039148	LINE	L1_Mus1	L1	chr9L1_Mus127038752	NonProperStrand	3	2	-inf
chr9	37462435	37462525	protein_coding-noncoding	Tbrg1	utr3	ENSMUSG00000011114	NonProperStrand	1	chr9	37462665	37462765	protein_coding	Tbrg1	intron	ENSMUSG00000011114	NonProperStrand	1	1	-inf
chr9	110281293	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr19	32278009	32278092	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-5.6393
chr17	48501951	48502002	protein_coding	Treml1	intron	ENSMUSG00000023993	ProperStrand	1	chr9	100918805	100918866	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	1	-inf
chr5	109656112	109656190	LINE	L1VL4	L1	chr5L1VL4109654758	NonProperStrand	1	chrX	151865039	151865107	LINE	L1Md_F2	L1	chrXL1Md_F2151864430	NonProperStrand	7	1	-inf
chr4	130775994	130776134	LINE	L1M5	L1	chr4L1M5130775991	NonProperStrand	1	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-inf
chr10	39843640	39843734	protein_coding	Slc16a10	intron	ENSMUSG00000019838	NonProperStrand	28	chr9	121370940	121370961	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	242	1	-10.7667
chr3	19215706	19215751	LINE	Lx8	L1	chr3Lx819215562	NonProperStrand	5	chr11	88573922	88573992	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	2	-18.2721
chr17	39843945	39843983	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr2	3410873	3410893	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-5.9370
chr17	32253311	32257794	lincRNA	Gm17276	intron	ENSMUSG00000090984	NonProperStrand	12	chr17	32257822	32283583	protein_coding	Notch3	utr3	ENSMUSG00000038146	ProperStrand	60	2	-inf
chr9	123462029	123462119	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	53068587	53068687	protein_coding	Arl6ip6	intron	ENSMUSG00000026960	ProperStrand	14	1	-3.7266
chr12	104727556	104727646	LTR	RLTR8	ERVK	chr12RLTR8104727488	ProperStrand	2	chr12	104727392	104727492	LTR	RMER17C	ERVK	chr12RMER17C104727091	ProperStrand	1	1	-inf
chr5	148552686	148552714	Low_complexity	GA-rich	Low_complexity	chr5GA-rich148552682	NonProperStrand	1	chr5	148552615	148552687	SINE	ID	ID	chr5ID148552606	NonProperStrand	1	1	-inf
chr7	30453754	30453794	LTR	MYSERV16_I-int	ERVK	chr7MYSERV16_I-int30453295	NonProperStrand	2	chr7	133045729	133045790	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-12.5887
chr6	148922050	148922112	SINE	B1_Mus1	Alu	chr6B1_Mus1148921994	NonProperStrand	2	chr9	59672041	59675611	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-13.7270
chr13	66846623	66846720	LTR	MT2A	ERVL	chr13MT2A66846600	ProperStrand	1	chr17	39847278	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	106460038	106460128	protein_coding	Tcl1	intron	ENSMUSG00000041359	NonProperStrand	3	chr12	106459678	106459778	protein_coding	Tcl1	intron	ENSMUSG00000041359	ProperStrand	1	1	-inf
chr13	51419342	51419442	LTR	MTB_Mm	MaLR	chr13MTB_Mm51419324	ProperStrand	7	chr13	51419210	51419300	SINE	B4A	B4	chr13B4A51419193	ProperStrand	7	7	-inf
chr5	146261173	146261199	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	134541551	134541567	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-4.3061
chr17	39847442	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	50195519	50195539	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	12	2	-3.1700
chr9	123461801	123461843	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr11	102675388	102675440	protein_coding	Gjc1	intron	ENSMUSG00000034520	NonProperStrand	6	1	-5.4370
chr13	97958571	97958661	protein_coding	Hexb	intron	ENSMUSG00000021665	NonProperStrand	1	chr17	65687648	65687748	protein_coding	Tmem232	intron	ENSMUSG00000045036	NonProperStrand	58	1	-inf
chr2	144559248	144559311	protein_coding	Dtd1	intron	ENSMUSG00000027430	ProperStrand	26	chr2	41468972	41468988	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-13.8223
chr17	39847636	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	mmu-miR-1187	5	21	miRNA	mmu-miR-1187	.	mmu-miR-1187	ProperStrand	3	1	-4.3512
chr3	95627181	95627227	SINE	B1_Mus1	Alu	chr3B1_Mus195627078	NonProperStrand	1	chr3	95627270	95627364	SINE	B3	B2	chr3B395627262	NonProperStrand	1	1	-inf
chr10	23785349	23785439	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr1	72713502	72713544	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	61	1	-10.0211
chr8	114991316	114991406	LINE	Lx3_Mus	L1	chr8Lx3_Mus114991252	NonProperStrand	3	chr8	114991424	114991524	LINE	Lx3_Mus	L1	chr8Lx3_Mus114991407	ProperStrand	7	2	-inf
chr16	43319198	43319283	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr10	39690390	39690453	protein_coding	BC021785	exon	ENSMUSG00000038528	ProperStrand	17	1	-11.1970
chr1	106385027	106385050	LINE	L1_Mur1	L1	chr1L1_Mur1106383348	ProperStrand	2	chr5	108073286	108073398	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	1	-18.4079
chr10	22705522	22705589	LTR	MLT1A	MaLR	chr10MLT1A22705446	ProperStrand	1	chr13	44869573	44869629	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr5	140081147	140081216	SINE	ID_B1	B4	chr5ID_B1140081111	NonProperStrand	2	chr5	140071321	140071358	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	2	-inf
chr12	69211392	69212264	LINE	L1_Mus3	L1	chr12L1_Mus369211195	NonProperStrand	2	chr6	3201470	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr9	58876371	58876388	protein_coding	Neo1	intron	ENSMUSG00000032340	NonProperStrand	25	1	-14.1672
chr9	123462036	123462096	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	72994535	72994605	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	9	1	-4.5963
chr12	92904544	92904634	protein_coding	Ston2	intron	ENSMUSG00000020961	NonProperStrand	6	chr15	36194209	36194309	protein_coding	Rnf19a	intron	ENSMUSG00000022280	NonProperStrand	6	1	-inf
chr8	105820654	105820754	LTR	ORR1A2	MaLR	chr8ORR1A2105820394	ProperStrand	2	chr8	105820762	105820852	SINE	ID_B1	B4	chr8ID_B1105820736	NonProperStrand	2	2	-inf
chr10	82082407	82082497	LTR	MTB	MaLR	chr10MTB82082120	ProperStrand	1	chr10	82082534	82082634	SINE	B1_Mur1	Alu	chr10B1_Mur182082522	ProperStrand	1	1	-inf
chr7	141451004	141451248	LTR	MT2A	ERVL	chr7MT2A141450778	NonProperStrand	38	chr7	141447974	141448769	SINE	PB1D10	Alu	chr7PB1D10141447926	NonProperStrand	38	11	-inf
chr19	29266382	29266472	LTR	ORR1B1	MaLR	chr19ORR1B129266322	NonProperStrand	1	chr19	29265859	29265957	LTR	ORR1B2	MaLR	chr19ORR1B229265694	ProperStrand	1	1	-inf
chrX	87238369	87238417	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr4	86576631	86576689	protein_coding	Acer2	utr5	ENSMUSG00000038007	ProperStrand	6	1	-14.2480
chr8	13952994	13953134	protein_coding	2610019F03Rik	utr3	ENSMUSG00000050052	ProperStrand	12	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-11.9068
chr2	67947883	67947938	protein_coding	B3galt1	intron	ENSMUSG00000034780	ProperStrand	5	chr3	94508635	94508703	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-17.2064
chr17	14946607	14946625	LTR	ORR1E-int	MaLR	chr17ORR1E-int14945863	NonProperStrand	4	chr18	10822129	10822214	LTR	MTE2b-int	MaLR	chr18MTE2b-int10821830	ProperStrand	1	1	-inf
chr17	39848099	39848189	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	121649467	121649567	protein_coding	Pde3b	intron	ENSMUSG00000030671	NonProperStrand	24	1	-3.0353
chr1	36339616	36339634	SINE	B2_Mm1t	B2	chr1B2_Mm1t36339572	NonProperStrand	1	chr1	36339772	36339848	SINE	B2_Mm2	B2	chr1B2_Mm236339787	NonProperStrand	1	1	-inf
chr1	100180176	100180223	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr17	39846353	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	20	-9.8302
chrX	104323389	104342537	LINE	L1_Mus2	L1	chrXL1_Mus2104322733	NonProperStrand	1	chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr3	68516662	68516704	LTR	MTC	MaLR	chr3MTC68516599	ProperStrand	1	chr3	68516485	68516589	LTR	RLTR17	ERVK	chr3RLTR1768516434	NonProperStrand	2	1	-inf
chr3	89750692	89750965	protein_coding-noncoding	Atp8b2	utr3	ENSMUSG00000060671	NonProperStrand	5	chr3	89750328	89750697	protein_coding	Atp8b2	exon	ENSMUSG00000060671	NonProperStrand	17	5	-inf
chr18	12867053	12867183	protein_coding	Ttc39c	intron	ENSMUSG00000024424	ProperStrand	7	chr1	84805096	84805117	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	1	-14.9963
chr11	28641686	28641786	LINE	L1Md_T	L1	chr11L1Md_T28640425	ProperStrand	1	chr11	29343787	29343877	protein_coding	Ccdc88a	intron	ENSMUSG00000032740	NonProperStrand	4	1	-inf
chr13	44869572	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	75858971	75861979	protein_coding	Pde11a	intron	ENSMUSG00000075270	NonProperStrand	79	1	-3.9712
chr10	128048064	128048276	LINE	Lx7	L1	chr10Lx7128047532	ProperStrand	18	chr6	3201475	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	2	-8.5680
chr11	53156889	53156979	SINE	B2_Mm2	B2	chr11B2_Mm253156869	NonProperStrand	1	chr11	53156725	53156825	SINE	ID_B1	B4	chr11ID_B153156684	NonProperStrand	1	1	-inf
chr17	26919623	26919723	protein_coding-noncoding	Bnip1	utr5	ENSMUSG00000024191	ProperStrand	5	chr17	26919441	26919531	protein_coding	Bnip1	intron	ENSMUSG00000024191	ProperStrand	26	1	-19.1584
chr6	10037197	10037297	LINE	L1_Mus1	L1	chr6L1_Mus110036392	ProperStrand	1	chr6	10037422	10037512	LTR	RLTR9E	ERVK	chr6RLTR9E10037330	NonProperStrand	1	1	-inf
chr5	134505291	134505845	LINE	L1Md_A	L1	chr5L1Md_A134504105	NonProperStrand	2	chr17	39846560	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr8	72538079	72538171	LTR	RMER19B	ERVK	chr8RMER19B72538011	ProperStrand	2	chr17	56613421	56613599	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	1	-17.4318
chr1	161036325	161036424	LINE	L1MEc	L1	chr1L1MEc161036259	ProperStrand	1	chr17	39846587	39846653	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	154476046	154476068	LTR	RMER10B	ERVL	chr2RMER10B154475778	NonProperStrand	1	chr2	154469870	154469930	protein_coding	Zfp341	intron	ENSMUSG00000059842	ProperStrand	110	1	-inf
chr13	29443320	29443394	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr2	76675270	76675334	protein_coding	Ttn	intron	ENSMUSG00000051747	NonProperStrand	37	1	-8.9201
chr6	119985131	119985221	lincRNA	Mir706	exon	ENSMUSG00000090388	ProperStrand	1	chr6	119981561	119981661	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	1	-inf
chr4	125252990	125253080	protein_coding	Grik3	intron	ENSMUSG00000001985	ProperStrand	112	chr5	121208456	121208556	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	3	-19.1199
chr12	28438285	28438385	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr18	33603800	33603890	protein_coding	D0H4S114	intron	ENSMUSG00000042834	ProperStrand	1	1	-inf
chr17	39847467	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	20667381	20667450	LTR	RMER19B	ERVK	chr5RMER19B20667363	ProperStrand	1	1	-inf
chr10	29013850	29013950	LTR	RMER3D-int	ERVK	chr10RMER3D-int29013854	NonProperStrand	1	chr10	29014471	29014561	LTR	RMER3D-int	ERVK	chr10RMER3D-int29014173	NonProperStrand	1	1	-inf
chr9	32056654	32056723	protein_coding-noncoding	Arhgap32	utr5	ENSMUSG00000041444	ProperStrand	7	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.3618
chr16	33236567	33236650	protein_coding	Osbpl11	intron	ENSMUSG00000022807	ProperStrand	29	chr8	94156246	94156319	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	1	-11.8636
chr17	39848199	39848247	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	110157426	110157484	protein_coding	Cspg5	intron	ENSMUSG00000032482	ProperStrand	12	2	-7.3691
chr14	27312933	27313032	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr3	89940875	89940922	protein_coding	Nup210l	exon	ENSMUSG00000027939	NonProperStrand	45	1	-10.2795
chr15	63997960	63998077	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-5.9566
chr7	67531168	67531222	LINE	L1_Mur2	L1	chr7L1_Mur267531098	NonProperStrand	1	chr9	110281273	110281337	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chrX	87238361	87238418	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-6.0186
chr9	97077699	97077789	LTR	MTE-int	MaLR	chr9MTE-int97077718	ProperStrand	3	chr9	97077597	97077697	Simple_repeat	(TA)n	Simple_repeat	chr9(TA)n97077553	NonProperStrand	2	1	-20.2824
chr6	24177160	24177250	LINE	L1Md_F2	L1	chr6L1Md_F224172693	NonProperStrand	2	chr6	21426233	21426333	protein_coding	Kcnd2	intron	ENSMUSG00000060882	NonProperStrand	14	1	-19.5799
chr1	10084576	10084653	protein_coding	Cspp1	intron	ENSMUSG00000056763	ProperStrand	46	chr2	63831379	63831432	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-12.0569
chr14	121927454	121927561	LTR	RMER4B	ERVK	chr14RMER4B121927453	ProperStrand	1	chr7	3219238	3219264	miRNA	Mir292	.	ENSMUSG00000078041	ProperStrand	8	1	-inf
chrX	74272519	74272579	SINE	B3	B2	chrXB374272477	ProperStrand	15	chr9	110281292	110281328	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-10.3714
chr14	21645453	21645553	SINE	RSINE1	B4	chr14RSINE121645452	ProperStrand	1	chr14	21639822	21639912	Simple_repeat	(TCTCC)n	Simple_repeat	chr14(TCTCC)n21639846	ProperStrand	1	1	-inf
chr13	19102879	19102898	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	chr9	64175421	64175479	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-10.4108
chr11	78341407	78341738	protein_coding	Tnfaip1	intron	ENSMUSG00000017615	NonProperStrand	23	chr6	85637586	85637609	protein_coding	Alms1	intron	ENSMUSG00000063810	ProperStrand	47	1	-14.4601
chr13	62596639	62596706	LTR	MTD	MaLR	chr13MTD62596534	ProperStrand	1	chr11	76148174	76148251	protein_coding	Nxn	intron	ENSMUSG00000020844	ProperStrand	42	1	-inf
chr6	119481905	119481924	protein_coding	Wnt5b	intron	ENSMUSG00000030170	NonProperStrand	16	chr8	67341776	67341889	protein_coding	Klhl2	intron	ENSMUSG00000031605	ProperStrand	3	1	-inf
chr5	108463717	108463817	SINE	B1F	Alu	chr5B1F108463728	NonProperStrand	1	chr5	107629600	107629690	protein_coding	Tgfbr3	intron	ENSMUSG00000029287	NonProperStrand	60	1	-inf
chr13	114028138	114028170	LINE	L1Md_A	L1	chr13L1Md_A114027719	ProperStrand	5	chr17	39847802	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr5	146261157	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	135301973	135304469	protein_coding	Sox13	intron	ENSMUSG00000070643	ProperStrand	9	1	-8.8915
chr2	128684726	128684816	LINE	L1M4	L1	chr2L1M4128684750	ProperStrand	1	chr2	128684961	128685061	LINE	Lx9	L1	chr2Lx9128684910	NonProperStrand	1	1	-inf
chr15	85177750	85177790	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr5	17776748	17776778	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-7.3965
chr11	117243481	117243560	SINE	B4A	B4	chr11B4A117243472	NonProperStrand	1	chr11	117223263	117223302	protein_coding	Sept9	utr3	ENSMUSG00000059248	ProperStrand	151	1	-inf
chr17	15761284	15761316	LINE	Lx7	L1	chr17Lx715761285	ProperStrand	1	chr17	39843329	39843459	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chrX	103463133	103463192	LINE	L1MD1	L1	chrXL1MD1103462698	NonProperStrand	3	chrX	103462127	103462196	Low_complexity	CT-rich	Low_complexity	chrXCT-rich103462013	ProperStrand	2	1	-20.2824
chr5	29364984	29365024	LINE	L1_Mur2	L1	chr5L1_Mur229364683	ProperStrand	1	chr5	29377755	29377829	LINE	L1_Mus3	L1	chr5L1_Mus329374229	ProperStrand	7	1	-inf
chr6	108660701	108660767	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n108660718	ProperStrand	1	chr9	123461934	123461976	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	57885863	57885972	protein_coding	Zhx1	exon	ENSMUSG00000022361	ProperStrand	13	chr9	123461822	123461870	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr11	116578970	116579044	LTR	RMER12	ERVK	chr11RMER12116578226	ProperStrand	2	chr17	39846822	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	5783569	5783623	lincRNA	Gm17431	exon	ENSMUSG00000091282	NonProperStrand	1	chr12	78350927	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr19	35243872	35243972	LINE	Lx8	L1	chr19Lx835243595	NonProperStrand	1	chr19	35243509	35243599	SINE	B3	B2	chr19B335243391	NonProperStrand	1	1	-inf
chr12	112807798	112807898	SINE	B1_Mus1	Alu	chr12B1_Mus1112807756	ProperStrand	5	chr12	112807895	112807985	SINE	B3A	B2	chr12B3A112807920	ProperStrand	5	5	-inf
chr12	31667265	31667314	LINE	L1VL4	L1	chr12L1VL431666114	NonProperStrand	2	chr14	56815405	56815479	LINE	L1Md_T	L1	chr14L1Md_T56814243	ProperStrand	1	1	-inf
chr1	96660027	96660117	LINE	Lx4B	L1	chr1Lx4B96659819	NonProperStrand	1	chr3	31205930	31206030	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	23	1	-inf
chr11	43566181	43566271	Low_complexity	CT-rich	Low_complexity	chr11CT-rich43566158	ProperStrand	1	chr2	71836609	71836709	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-inf
chr17	82278639	82278739	LTR	RLTR42-int	ERVK	chr17RLTR42-int82278654	ProperStrand	1	chr17	81973755	81973845	protein_coding	Slc8a1	intron	ENSMUSG00000054640	NonProperStrand	10	1	-inf
chr1	136877186	136877286	LTR	MTD	MaLR	chr1MTD136877073	ProperStrand	1	chr1	136877302	136877393	Low_complexity	CT-rich	Low_complexity	chr1CT-rich136877278	NonProperStrand	1	1	-inf
chr3	22080273	22080331	protein_coding	Tbl1xr1	intron	ENSMUSG00000027630	NonProperStrand	10	chr5	149048821	149048889	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-14.7057
chr12	65132454	65132561	LINE	L1_Mm	L1	chr12L1_Mm65131261	ProperStrand	1	chr12	65134345	65134389	LINE	L1_Mus3	L1	chr12L1_Mus365134269	ProperStrand	1	1	-inf
chr2	22744837	22744912	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	4534344	4534417	protein_coding	Srl	intron	ENSMUSG00000022519	ProperStrand	96	1	-5.8812
chr10	111494201	111494291	LTR	IAPEz-int	ERVK	chr10IAPEz-int111492107	ProperStrand	13	chr10	111494798	111495124	LTR	IAPLTR1_Mm	ERVK	chr10IAPLTR1_Mm111495067	ProperStrand	3	3	-inf
chr13	108063287	108063380	LTR	MTB-int	MaLR	chr13MTB-int108063284	NonProperStrand	2	chr9	75461098	75466204	Other	RMER1B	Other	chr9RMER1B75466055	NonProperStrand	1	1	-inf
chr6	33606237	33606337	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chrX	13202578	13202668	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-4.9181
chr17	39848572	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	132316974	132317040	SINE	B3A	B2	chr4B3A132316990	ProperStrand	2	1	-8.7208
chr12	25450679	25450779	LTR	RMER19B	ERVK	chr12RMER19B25450377	ProperStrand	1	chr12	37341392	37341482	protein_coding	Ispd	intron	ENSMUSG00000043153	ProperStrand	14	1	-inf
chr17	39843340	39843479	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr18	61231428	61231445	protein_coding	Pdgfrb	intron	ENSMUSG00000024620	NonProperStrand	10	1	-5.9887
chr11	3680010	3680214	protein_coding	Osbp2	intron	ENSMUSG00000020435	NonProperStrand	65	chr16	44155167	44155217	protein_coding	Naa50	intron	ENSMUSG00000022698	ProperStrand	41	2	-inf
chr2	90395146	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr12	83521745	83521842	protein_coding	Sipa1l1	intron	ENSMUSG00000042700	ProperStrand	61	1	-9.6881
chr9	109023844	109023934	SINE	B3	B2	chr9B3109023845	NonProperStrand	1	chr9	109023499	109023599	SINE	B3A	B2	chr9B3A109023513	NonProperStrand	1	1	-inf
chr3	110767906	110767996	LINE	L1Md_F2	L1	chr3L1Md_F2110767859	NonProperStrand	1	chr3	110767593	110767693	LINE	L1_Mus4	L1	chr3L1_Mus4110766933	ProperStrand	1	1	-inf
chrX	74344552	74344569	LINE	L1Md_F2	L1	chrXL1Md_F274343867	ProperStrand	4	chr3	94652981	94653027	protein_coding	Pogz	intron	ENSMUSG00000038902	NonProperStrand	3	1	-inf
chr3	51794240	51794330	protein_coding	Maml3	intron	ENSMUSG00000061143	NonProperStrand	13	chr3	51753822	51753922	protein_coding	Maml3	intron	ENSMUSG00000061143	ProperStrand	37	1	-16.1431
chr16	15630322	15630363	protein_coding	Mcm4	intron	ENSMUSG00000022673	ProperStrand	19	chr16	90224422	90225195	protein_coding	Sod1	intron	ENSMUSG00000022982	ProperStrand	43	1	-15.0285
chr6	124930759	124930861	LTR	IAPEz-int	ERVK	chr6IAPEz-int124924421	NonProperStrand	6	chr6	124930864	124930954	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm124930851	NonProperStrand	5	5	-inf
chr6	58651386	58651407	LINE	L1_Mm	L1	chr6L1_Mm58651176	ProperStrand	1	chr6	58642287	58642392	protein_coding	Abcg2	utr3	ENSMUSG00000029802	ProperStrand	28	1	-inf
chr18	23857756	23857788	DNA	MER82	MER2_type	chr18MER8223857547	ProperStrand	1	chr18	23853982	23854047	LINE	L1Md_T	L1	chr18L1Md_T23853829	ProperStrand	1	1	-inf
chrX	136271716	136271733	protein_coding	Tbc1d8b	intron	ENSMUSG00000042473	NonProperStrand	10	chr7	19703273	19703359	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-15.3222
chr13	97485669	97485838	LTR	MLT1E	MaLR	chr13MLT1E97485632	NonProperStrand	7	chr13	97485374	97485474	LTR	RLTR45	ERVK	chr13RLTR4597485142	NonProperStrand	27	4	-inf
chr3	86123742	86126653	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	chr9	118674950	118675010	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.3587
chr18	25753665	25753682	protein_coding	Celf4	intron	ENSMUSG00000024268	NonProperStrand	3	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr9	123462100	123462170	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	116837006	116837037	protein_coding	Kif2c	intron	ENSMUSG00000028678	ProperStrand	1	1	-inf
chr8	33890400	33890422	LINE	Lx7	L1	chr8Lx733890310	NonProperStrand	1	chr3	95100297	95100329	protein_coding	Anxa9	utr3	ENSMUSG00000015702	ProperStrand	6	1	-inf
chr9	8241425	8241515	protein_coding	1700128F08Rik	utr3	ENSMUSG00000031998	NonProperStrand	2	chr15	6672648	6672748	protein_coding	Rictor	intron	ENSMUSG00000050310	ProperStrand	30	1	-21.6628
chr3	95211885	95211985	DNA	Charlie25	MER1_type	chr3Charlie2595211745	ProperStrand	4	chr3	95211980	95212070	SINE	B3	B2	chr3B395211984	ProperStrand	4	4	-inf
chr9	42050726	42050764	LTR	ORR1A4-int	MaLR	chr9ORR1A4-int42050623	ProperStrand	2	chr6	47788068	47788148	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	2	-inf
chr13	23267949	23268005	LTR	MMETn-int	ERVK	chr13MMETn-int23262346	NonProperStrand	1	chr17	39847204	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	132304615	132304661	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr17	47570675	47570704	protein_coding	1700001C19Rik	intron	ENSMUSG00000047150	ProperStrand	2	1	-14.6634
chr4	91273489	91273555	LINE	L1Md_F3	L1	chr4L1Md_F391270892	NonProperStrand	7	chr2	91670944	91670960	protein_coding	Ambra1	intron	ENSMUSG00000040506	NonProperStrand	61	1	-16.4256
chr6	51379485	51379575	LTR	RMER20B	ERVK	chr6RMER20B51379495	ProperStrand	1	chr6	51379690	51379790	SINE	B1_Mus2	Alu	chr6B1_Mus251379706	ProperStrand	1	1	-inf
chr2	75909369	75909514	protein_coding	Pde11a	intron	ENSMUSG00000075270	NonProperStrand	79	chr11	99195323	99195341	protein_coding	Krt26	intron	ENSMUSG00000075570	ProperStrand	1	1	-inf
chr8	87584478	87584578	protein_coding-noncoding	Fbxw9	utr5	ENSMUSG00000008167	ProperStrand	1	chr8	87584079	87584169	protein_coding	Fbxw9	exon	ENSMUSG00000008167	ProperStrand	1	1	-inf
chr17	39846821	39846877	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	52642174	52642220	SINE	B1F	Alu	chr5B1F52642090	NonProperStrand	1	1	-inf
chr1	15811185	15811236	protein_coding	Terf1	intron	ENSMUSG00000025925	ProperStrand	66	chr17	46799100	46799161	protein_coding	Cul7	exon	ENSMUSG00000038545	NonProperStrand	26	1	-13.5248
chr9	123461826	123461912	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	127430288	127430348	protein_coding	Mrps5	utr3	ENSMUSG00000027374	ProperStrand	9	1	-4.5963
chr7	116261348	116261438	LTR	MT2_Mm	ERVL	chr7MT2_Mm116261356	ProperStrand	2	chr7	116261252	116261352	LTR	MTD	MaLR	chr7MTD116260967	ProperStrand	11	2	-inf
chr13	114090144	114090234	LINE	L1Md_F2	L1	chr13L1Md_F2114088300	NonProperStrand	18	chr8	119533326	119533426	protein_coding-noncoding	Pkd1l2	utr3	ENSMUSG00000034416	ProperStrand	6	2	-inf
chr6	3201509	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	137758587	137758615	protein_coding	Eif4g3	intron	ENSMUSG00000028760	NonProperStrand	48	1	-3.2972
chr13	38662013	38662029	Simple_repeat	(CTG)n	Simple_repeat	chr13(CTG)n38661993	NonProperStrand	1	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr1	72845380	72845449	DNA	MER102c	MER1_type	chr1MER102c72845345	ProperStrand	2	chr1	72847585	72847656	SINE	B1_Mus2	Alu	chr1B1_Mus272847534	ProperStrand	1	1	-inf
chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	111701707	111701781	SINE	B1_Mur2	Alu	chr13B1_Mur2111701717	ProperStrand	1	1	-inf
chr17	39846985	39847012	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	59522203	59524960	protein_coding-noncoding	Crybg3	utr3	ENSMUSG00000022723	ProperStrand	1	1	-inf
chr10	36578122	36578141	LINE	Lx6	L1	chr10Lx636578110	ProperStrand	5	chr17	39847025	39847154	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr16	91647919	91651654	protein_coding	Son	utr5	ENSMUSG00000022961	ProperStrand	70	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.8241
chr17	39848198	39848227	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr12	17548109	17548314	SINE	B1_Mus2	Alu	chr12B1_Mus217548107	NonProperStrand	4	1	-6.6701
chr13	99420246	99420296	LINE	Lx7	L1	chr13Lx799420094	NonProperStrand	1	chr2	163082573	163082611	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-inf
chr17	39847197	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	7677234	7677265	LTR	RLTR1B	ERV1	chr6RLTR1B7677060	NonProperStrand	5	1	-4.3348
chr2	22744837	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	66934444	66934509	protein_coding	Gng12	intron	ENSMUSG00000036402	ProperStrand	67	1	-6.5897
chr7	66197637	66197727	LINE	Lx	L1	chr7Lx66197644	NonProperStrand	1	chr7	66197144	66197244	LTR	RLTR22_Mur	ERVK	chr7RLTR22_Mur66197096	ProperStrand	1	1	-inf
chr8	85996228	85996250	LINE	L1Md_F2	L1	chr8L1Md_F285995229	NonProperStrand	1	chr6	3201469	3201501	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr7	12930825	12930848	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr2	92011364	92011483	protein_coding	Phf21a	intron	ENSMUSG00000058318	NonProperStrand	121	1	-10.0357
chr17	39848486	39848513	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr6	72319767	72319804	protein_coding	Vamp5	intron	ENSMUSG00000073002	ProperStrand	8	1	-5.4397
chr13	53219028	53219099	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	chr11	68331656	68331718	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-8.1557
chr2	90757648	90757770	protein_coding-noncoding	Ptpmt1	utr3	ENSMUSG00000063235	NonProperStrand	2	chr2	90757460	90758151	protein_coding	Ptpmt1	intron	ENSMUSG00000063235	NonProperStrand	4	2	-inf
chr17	39847285	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	65781373	65781417	protein_coding-noncoding	Prdm5	utr5	ENSMUSG00000029913	ProperStrand	3	1	-5.4882
chr17	39847844	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	14637312	14637331	protein_coding	Mre11a	intron	ENSMUSG00000031928	ProperStrand	3	1	-4.3512
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr2	33265032	33265168	protein_coding	Zbtb34	utr3	ENSMUSG00000068966	ProperStrand	29	2	-inf
chr11	89001722	89001776	LTR	MTE2b	MaLR	chr11MTE2b89001467	NonProperStrand	1	chr11	89001391	89001435	SINE	B3	B2	chr11B389001262	ProperStrand	1	1	-inf
chr5	146260998	146261235	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	2	-8.4949
chr6	3201454	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	43492911	43492954	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	2	-6.4036
chr17	83404998	83405032	LINE	Lx9	L1	chr17Lx983404753	ProperStrand	2	chr7	96362291	96362370	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-16.3572
chrX	76129182	76129212	LINE	L1Md_F2	L1	chrXL1Md_F276129114	ProperStrand	4	chr9	123461957	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	chr19	28381734	28381816	protein_coding	Glis3	intron	ENSMUSG00000052942	ProperStrand	174	1	-9.8207
chr1	119461433	119461451	LINE	Lx2B	L1	chr1Lx2B119461299	ProperStrand	7	chr17	39847165	39847203	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr2	127234866	127234956	SINE	MIRc	MIR	chr2MIRc127234879	ProperStrand	1	chr16	10217045	10217145	protein_coding	Atf7ip2	intron	ENSMUSG00000039200	ProperStrand	34	1	-inf
chrX	162930536	162930626	SINE	B1_Mur2	Alu	chrXB1_Mur2162930519	ProperStrand	1	chrX	162930392	162930492	Simple_repeat	(CCTTG)n	Simple_repeat	chrX(CCTTG)n162930380	NonProperStrand	1	1	-inf
chr7	93431829	93431929	LINE	MusHAL1	L1	chr7MusHAL193431798	NonProperStrand	1	chr7	93439599	93439689	SINE	B1_Mus2	Alu	chr7B1_Mus293439597	NonProperStrand	1	1	-inf
chr12	88360555	88360571	LTR	ORR1D1	MaLR	chr12ORR1D188360390	NonProperStrand	5	chr17	39847440	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr9	53692897	53692971	LINE	L1MA7	L1	chr9L1MA753692874	ProperStrand	1	chr9	53692687	53692746	SINE	B1_Mus1	Alu	chr9B1_Mus153692698	ProperStrand	1	1	-inf
chr2	78915511	78915537	SINE	B3	B2	chr2B378915441	NonProperStrand	2	chr2	31617219	31617235	protein_coding	Abl1	intron	ENSMUSG00000026842	NonProperStrand	15	2	-inf
chr17	21806121	21806191	LINE	L1_Mur2	L1	chr17L1_Mur221805271	NonProperStrand	3	chr17	39847470	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr4	85335564	85335590	lincRNA	Gm12680	intron	ENSMUSG00000087349	ProperStrand	49	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-6.9732
chr17	39844027	39844080	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr4	126860205	126860297	protein_coding	Dlgap3	intron	ENSMUSG00000042388	NonProperStrand	48	1	-4.4106
chr7	90197278	90197327	LINE	L1_Mus3	L1	chr7L1_Mus390197034	ProperStrand	1	chr15	34440789	34440886	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	1	-inf
chr8	47965358	47965456	LINE	L1M2	L1	chr8L1M247964802	ProperStrand	2	chr8	47965529	47965619	LINE	Lx8	L1	chr8Lx847965539	NonProperStrand	1	1	-inf
chr10	81238321	81238411	LTR	MT2B2	ERVL	chr10MT2B281238158	NonProperStrand	1	chr10	81238406	81238506	LTR	RLTR19-int	ERVK	chr10RLTR19-int81238396	NonProperStrand	1	1	-inf
chr6	88084724	88084814	LINE	Lx5	L1	chr6Lx588084655	NonProperStrand	5	chr6	88084837	88084937	LINE	Lx5	L1	chr6Lx588084799	ProperStrand	4	4	-inf
chr4	66146984	66147074	LINE	L1Md_F2	L1	chr4L1Md_F266146836	ProperStrand	1	chr4	66147339	66147439	LINE	L1Md_F2	L1	chr4L1Md_F266147117	ProperStrand	1	1	-inf
chr10	17847265	17847355	LINE	Lx9	L1	chr10Lx917846601	NonProperStrand	1	chr10	17847422	17847522	LINE	Lx9	L1	chr10Lx917847443	NonProperStrand	1	1	-inf
chr8	73341281	73341342	protein_coding	Il12rb1	intron	ENSMUSG00000000791	NonProperStrand	44	chr12	78350926	78351012	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.5090
chr11	12435942	12436042	LINE	L1_Mus1	L1	chr11L1_Mus112435836	NonProperStrand	1	chr17	39843376	39843466	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr1	111735821	111735841	LINE	Lx3_Mus	L1	chr1Lx3_Mus111735018	ProperStrand	1	chr8	88536879	88536979	protein_coding	Phkb	intron	ENSMUSG00000036879	ProperStrand	35	1	-inf
chr17	39847730	39847817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	27029264	27029327	antisense	Gm20468	.	ENSMUSG00000092539	NonProperStrand	2	1	-5.4040
chr17	39846733	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	102185097	102185154	SINE	B4A	B4	chr11B4A102185023	NonProperStrand	3	1	-4.3017
chr4	119280458	119280558	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	chr2	25192746	25192836	protein_coding	Man1b1	intron	ENSMUSG00000036646	ProperStrand	5	1	-15.8146
chr13	97492374	97492483	LINE	L1_Rod	L1	chr13L1_Rod97492375	NonProperStrand	23	chr13	97492261	97492356	SINE	B1_Mus1	Alu	chr13B1_Mus197492228	ProperStrand	3	2	-20.6169
chr10	23785346	23785462	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr16	38599261	38599279	protein_coding	Arhgap31	utr3	ENSMUSG00000022799	ProperStrand	4	1	-15.7561
chr1	74242322	74242412	LTR	MTD	MaLR	chr1MTD74242212	ProperStrand	1	chr1	74242467	74242567	SINE	B2_Mm2	B2	chr1B2_Mm274242462	ProperStrand	1	1	-inf
chr14	26964869	26970412	LTR	RMER17C-int	ERVK	chr14RMER17C-int26964873	NonProperStrand	2	chr14	26970421	26970511	Low_complexity	A-rich	Low_complexity	chr14A-rich26970433	NonProperStrand	2	2	-inf
chr5	56064882	56064982	LINE	Lx2B	L1	chr5Lx2B56064301	ProperStrand	1	chr2	154449263	154449353	protein_coding	Zfp341	intron	ENSMUSG00000059842	ProperStrand	110	1	-inf
chr6	29968428	29968528	LTR	ORR1C1	MaLR	chr6ORR1C129968187	ProperStrand	1	chr6	29968783	29968873	SINE	B3A	B2	chr6B3A29968769	ProperStrand	1	1	-inf
chr2	39786647	39786747	LINE	L1Md_F2	L1	chr2L1Md_F239785900	ProperStrand	2	chr2	39786835	39786925	LINE	L1Md_F	L1	chr2L1Md_F39786812	ProperStrand	1	1	-inf
chr7	80086907	80086997	LINE	L1Md_F2	L1	chr7L1Md_F280085878	ProperStrand	1	chr6	89281900	89281918	protein_coding	Plxna1	exon	ENSMUSG00000030084	ProperStrand	9	1	-inf
chr7	28842562	28842614	LTR	MTEa-int	MaLR	chr7MTEa-int28842352	NonProperStrand	1	chr7	28842230	28842263	LTR	MTEa	MaLR	chr7MTEa28842175	NonProperStrand	1	1	-inf
chr19	45380559	45380659	SINE	ID_B1	B4	chr19ID_B145380548	ProperStrand	2	chr19	45452900	45452990	protein_coding	Btrc	intron	ENSMUSG00000025217	ProperStrand	59	2	-inf
chr13	97190562	97190582	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr17	25435788	25435904	protein_coding	Prss34	intron	ENSMUSG00000056399	ProperStrand	2	2	-inf
chr10	91323848	91323938	LINE	Lx6	L1	chr10Lx691323729	ProperStrand	1	chr10	91324143	91324243	LINE	Lx6	L1	chr10Lx691323929	ProperStrand	1	1	-inf
chr17	12245438	12245524	protein_coding	Park2	intron	ENSMUSG00000023826	NonProperStrand	48	chr5	21764875	21764891	protein_coding	Reln	intron	ENSMUSG00000042453	NonProperStrand	79	1	-11.9190
chr6	71390388	71390502	protein_coding	Rmnd5a	utr5	ENSMUSG00000002222	ProperStrand	14	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.0321
chr1	122357166	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr18	76298488	76299836	protein_coding	Zbtb7c	intron	ENSMUSG00000044646	ProperStrand	68	1	-8.6579
chr2	5824681	5824771	protein_coding-noncoding	Dhtkd1	utr3	ENSMUSG00000025815	ProperStrand	1	chr2	5824570	5824670	protein_coding	Dhtkd1	intron	ENSMUSG00000025815	ProperStrand	28	1	-inf
chr17	39847174	39847365	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	54699169	54699231	Simple_repeat	(TGGA)n	Simple_repeat	chr18(TGGA)n54699160	NonProperStrand	11	3	-7.5369
chr19	37903778	37903848	LINE	L1Md_F2	L1	chr19L1Md_F237903102	ProperStrand	1	chr19	37905318	37907597	LTR	RMER5	ERV1	chr19RMER537904929	NonProperStrand	1	1	-inf
chr7	92655946	92656047	Simple_repeat	(TC)n	Simple_repeat	chr7(TC)n92655966	NonProperStrand	1	chr4	115021143	115021480	pseudogene	Gm12836	.	ENSMUSG00000083190	ProperStrand	7	1	-inf
chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	chr6	114691340	114691428	protein_coding	Atg7	intron	ENSMUSG00000030314	ProperStrand	67	1	-12.4733
chr17	39848652	39848742	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr10	91150144	91150207	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n91150152	NonProperStrand	1	1	-inf
chr12	75457760	75457822	LINE	L1_Mm	L1	chr12L1_Mm75457417	NonProperStrand	1	chr12	75459013	75459073	LTR	MER31-int	ERV1	chr12MER31-int75458917	NonProperStrand	1	1	-inf
chr2	32155259	32155359	protein_coding	Golga2	intron	ENSMUSG00000002546	ProperStrand	57	chr2	32180329	32180419	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	1	-9.4851
chr11	109011647	109011676	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	65064047	65064174	protein_coding	Myocd	intron	ENSMUSG00000020542	ProperStrand	122	1	-4.7188
chr8	86686608	86686735	protein_coding	4930432K21Rik	intron	ENSMUSG00000008129	ProperStrand	37	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0707
chr5	108093275	108093308	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr2	33080928	33081006	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-8.7069
chr15	84853374	84853395	Simple_repeat	(TAGA)n	Simple_repeat	chr15(TAGA)n84853348	NonProperStrand	2	chr9	110281287	110281318	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-15.0096
chr12	25057414	25057431	LTR	RMER16-int	ERVK	chr12RMER16-int25057131	ProperStrand	7	chr13	62551763	62551861	LTR	RLTR11A	ERVK	chr13RLTR11A62551714	NonProperStrand	2	2	-inf
chr6	136402058	136402148	LTR	MMERGLN-int	ERV1	chr6MMERGLN-int136401981	NonProperStrand	1	chr6	136402371	136402471	LTR	RLTR19-int	ERVK	chr6RLTR19-int136402310	NonProperStrand	1	1	-inf
chr10	23785412	23785455	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chrX	7155518	7155611	protein_coding	Ppp1r3f	intron	ENSMUSG00000039556	ProperStrand	6	1	-14.8294
chr1	34167920	34169167	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr12	81373473	81373573	protein_coding	CT030161.1	intron	ENSMUSG00000079585	ProperStrand	5	1	-11.9333
chr16	23110389	23110500	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr11	35417334	35417379	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	5	-inf
chr8	73344291	73344353	protein_coding	Il12rb1	intron	ENSMUSG00000000791	NonProperStrand	44	chr4	84319897	84319969	protein_coding	Bnc2	intron	ENSMUSG00000028487	ProperStrand	55	1	-12.8239
chr10	81561245	81564106	LINE	L1_Mur2	L1	chr10L1_Mur281560964	NonProperStrand	3	chr10	81564898	81565316	LTR	ORR1A4-int	MaLR	chr10ORR1A4-int81564612	NonProperStrand	5	1	-inf
chrX	63288064	63288154	LINE	L1MA6	L1	chrXL1MA663287915	NonProperStrand	1	chrX	63288171	63288271	LINE	L3	CR1	chrXL363288133	NonProperStrand	1	1	-inf
chr7	136139688	136139778	LTR	RMER15	ERVL	chr7RMER15136139678	ProperStrand	1	chr7	136139314	136139414	Simple_repeat	(CAG)n	Simple_repeat	chr7(CAG)n136139174	NonProperStrand	1	1	-inf
chr8	86028433	86028474	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int86028329	ProperStrand	2	chr9	123461931	123462017	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr11	52410323	52410406	LTR	MTD	MaLR	chr11MTD52410122	NonProperStrand	2	chr5	129963037	129963078	LTR	RMER20B	ERVK	chr5RMER20B129962953	ProperStrand	1	1	-inf
chr4	99965474	99966859	protein_coding	Ror1	intron	ENSMUSG00000035305	ProperStrand	128	chr14	33967607	33967759	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	2	-15.8231
chr2	71211783	71211802	LINE	L1ME2z	L1	chr2L1ME2z71211384	NonProperStrand	7	chr17	39847026	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	4	-10.4569
chr8	102020052	102020071	processed_transcript	Gm15680	.	ENSMUSG00000090116	ProperStrand	5	chr9	123461836	123461919	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr9	110204715	110204815	LTR	LTR65	ERV1	chr9LTR65110204728	ProperStrand	1	chr9	110204586	110204676	SINE	B1_Mur2	Alu	chr9B1_Mur2110204589	NonProperStrand	1	1	-inf
chr2	120366955	120367057	protein_coding	Zfp106	intron	ENSMUSG00000027288	ProperStrand	14	chr8	113795620	113795669	protein_coding	Rfwd3	utr3	ENSMUSG00000033596	ProperStrand	1	1	-inf
chr8	91641524	91641541	LINE	L1_Mur2	L1	chr8L1_Mur291640254	NonProperStrand	1	chr17	39846645	39846765	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	142800157	142800237	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n142800175	NonProperStrand	1	chr19	3526794	3526863	protein_coding	Ppp6r3	exon	ENSMUSG00000024908	ProperStrand	213	1	-inf
chr2	60084606	60084646	protein_coding-noncoding	March7	utr5	ENSMUSG00000026977	NonProperStrand	2	chr1	132986397	132986497	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	1	-17.3747
chr17	39847440	39847526	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	91417009	91417062	protein_coding	RP23-190G10.4	intron	ENSMUSG00000093701	ProperStrand	4	1	-3.7035
chr17	39847298	39847329	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	37578052	37578093	SINE	B1_Mur4	Alu	chr2B1_Mur437577940	NonProperStrand	1	1	-inf
chr5	23576860	23576960	LTR	ORR1E-int	MaLR	chr5ORR1E-int23576550	NonProperStrand	3	chr5	23576990	23577080	LTR	RLTR13B1	ERVK	chr5RLTR13B123576932	ProperStrand	3	2	-20.2273
chr13	94289372	94289472	SINE	RSINE1	B4	chr13RSINE194289329	ProperStrand	1	chr13	94289485	94289575	Simple_repeat	(TCTA)n	Simple_repeat	chr13(TCTA)n94289472	NonProperStrand	1	1	-inf
chr18	14751152	14751237	LTR	RLTR9E	ERVK	chr18RLTR9E14750958	ProperStrand	1	chr9	107424142	107424198	protein_coding	Cacna2d2	intron	ENSMUSG00000010066	ProperStrand	6	1	-inf
chr9	114547794	114547822	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	chr1	34445976	34446032	protein_coding	Gm11158	intron	ENSMUSG00000079617	NonProperStrand	17	1	-10.5645
chr11	23860229	23860304	LINE	Lx5	L1	chr11Lx523859777	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr15	102483162	102483262	LINE	L1MC4	L1	chr15L1MC4102483174	NonProperStrand	13	chr15	102483251	102487104	SINE	B2_Mm2	B2	chr15B2_Mm2102484092	ProperStrand	10	10	-inf
chr17	39846758	39846786	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	157552161	157552179	protein_coding	Lhx4	intron	ENSMUSG00000026468	NonProperStrand	1	1	-inf
chr5	140235944	140236020	protein_coding	Ints1	intron	ENSMUSG00000029547	ProperStrand	67	chr5	140208753	140208812	protein_coding	Micall2	utr5	ENSMUSG00000036718	ProperStrand	59	1	-11.8347
chr15	34442662	34442722	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	chr19	42115566	42115615	protein_coding	Ankrd2	intron	ENSMUSG00000025172	ProperStrand	1	1	-inf
chr17	39847226	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	34707679	34707748	LTR	MT2_Mm	ERVL	chr1MT2_Mm34707401	NonProperStrand	1	1	-inf
chr2	69050891	69050953	protein_coding	G6pc2	intron	ENSMUSG00000005232	ProperStrand	5	chr4	33019446	33019474	protein_coding	Ankrd6	intron	ENSMUSG00000040183	NonProperStrand	39	1	-18.2041
chr13	97190551	97190592	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr9	56223570	56223698	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	2	-3.5129
chr6	93396659	93396749	LINE	L1MA4A	L1	chr6L1MA4A93396378	NonProperStrand	1	chr6	93397011	93397111	Simple_repeat	(GCTG)n	Simple_repeat	chr6(GCTG)n93397038	ProperStrand	1	1	-inf
chr17	39843935	39844023	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr1	55079203	55080134	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	1	-5.0206
chr18	73667292	73667392	LINE	L1MA9	L1	chr18L1MA973666761	ProperStrand	7	chr18	73667390	73667481	LINE	L1MA9	L1	chr18L1MA973667402	ProperStrand	2	2	-inf
chr1	136364891	136364952	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr6	95453486	95453555	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-8.4923
chr17	39848319	39848396	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	39360734	39360765	protein_coding	Npas2	intron	ENSMUSG00000026077	NonProperStrand	32	2	-4.4718
chr17	39847457	39847495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	18323530	18323626	LTR	RLTR20D	ERVK	chr5RLTR20D18323556	NonProperStrand	1	1	-inf
chr15	99295535	99295623	SINE	RSINE1	B4	chr15RSINE199295560	NonProperStrand	1	chr15	99300966	99301002	protein_coding	Bcdin3d	exon	ENSMUSG00000037525	NonProperStrand	16	1	-inf
chr2	5379271	5379350	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr11	70958202	70958271	protein_coding	Nlrp1a	utr5	ENSMUSG00000069830	ProperStrand	19	1	-6.8156
chr8	22577298	22577406	LINE	L1_Mus1	L1	chr8L1_Mus122574069	NonProperStrand	7	chr3	108429408	108429454	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	57	1	-16.5751
chr5	109660101	109660221	LINE	L1_Mur2	L1	chr5L1_Mur2109660106	NonProperStrand	1	chr17	39847341	39847379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846703	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	74576462	74578937	protein_coding	Hoxd3	intron	ENSMUSG00000079277	NonProperStrand	10	2	-3.6091
chr6	148304035	148304167	protein_coding	Tmtc1	intron	ENSMUSG00000030306	ProperStrand	64	chr11	61829435	61830590	protein_coding	Specc1	intron	ENSMUSG00000042331	ProperStrand	27	1	-13.5088
chr5	136485551	136485583	protein_coding	Dtx2	intron	ENSMUSG00000004947	NonProperStrand	47	chr2	73012897	73012919	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	1	-12.0396
chr17	39847440	39847558	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	127257270	127260633	protein_coding	Tmem159	intron	ENSMUSG00000030917	NonProperStrand	16	3	-3.9541
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr14	55658329	55658357	pseudogene	Gm10364	.	ENSMUSG00000072492	NonProperStrand	1	1	-inf
chr5	24143995	24144095	LTR	MTD	MaLR	chr5MTD24143992	NonProperStrand	1	chr5	24143881	24143971	SINE	B1_Mur4	Alu	chr5B1_Mur424143848	ProperStrand	1	1	-inf
chr12	73087995	73088013	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	15	chr4	110196060	110196189	protein_coding	Agbl4	intron	ENSMUSG00000061298	ProperStrand	46	1	-15.3920
chr1	60232033	60232123	LTR	RMER6A	ERVK	chr1RMER6A60231684	NonProperStrand	1	chr1	60232331	60232431	LTR	RMER6A	ERVK	chr1RMER6A60232325	NonProperStrand	1	1	-inf
chr6	24661469	24661559	LINE	Lx2B	L1	chr6Lx2B24661412	NonProperStrand	1	chr6	24661692	24661792	LINE	Lx2B	L1	chr6Lx2B24661602	ProperStrand	1	1	-inf
chr10	29291815	29291847	LINE	L1_Mus3	L1	chr10L1_Mus329291571	NonProperStrand	1	chr2	61595964	61596046	protein_coding	Psmd14	intron	ENSMUSG00000026914	ProperStrand	7	1	-inf
chr17	39846954	39847038	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	91119693	91121982	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n91119639	NonProperStrand	1	1	-inf
chr6	37432046	37432146	LTR	RLTR14	ERV1	chr6RLTR1437431977	NonProperStrand	1	chr6	37432150	37432240	LTR	RLTR14	ERV1	chr6RLTR1437432131	NonProperStrand	1	1	-inf
chr6	55052186	55052241	protein_coding	Crhr2	intron	ENSMUSG00000003476	NonProperStrand	33	chr14	7896109	7896174	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-10.7650
chr16	13344811	13344837	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	chr11	102538083	102538119	protein_coding	Gm1564	exon	ENSMUSG00000051455	NonProperStrand	16	1	-12.8311
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr15	55043614	55043750	protein_coding	Deptor	intron	ENSMUSG00000022419	NonProperStrand	21	1	-12.4074
chr14	49043925	49044015	DNA	MER2	MER2_type	chr14MER249043864	ProperStrand	1	chr14	49043605	49043705	LTR	MTEb	MaLR	chr14MTEb49043454	ProperStrand	3	1	-inf
chr6	109895343	109895443	DNA	URR1A	MER1_type	chr6URR1A109895363	NonProperStrand	1	chr6	109895152	109895242	LTR	ORR1D2	MaLR	chr6ORR1D2109894966	ProperStrand	1	1	-inf
chr17	25421544	25421642	LTR	RLTR23	ERV1	chr17RLTR2325421164	NonProperStrand	2	chr17	25421651	25421741	LTR	RMER6A	ERVK	chr17RMER6A25421623	NonProperStrand	2	2	-inf
chr5	65597446	65597488	protein_coding	Wdr19	intron	ENSMUSG00000037890	ProperStrand	17	chr13	55472865	55472882	protein_coding	Rgs14	intron	ENSMUSG00000052087	NonProperStrand	9	1	-18.4252
chr17	39847188	39847240	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	5740681	5740764	protein_coding	Steap1	exon	ENSMUSG00000015652	ProperStrand	1	1	-inf
chr3	87086571	87088173	LINE	L1Md_F2	L1	chr3L1Md_F287085258	NonProperStrand	11	chr17	80655446	80655554	protein_coding	Dhx57	intron	ENSMUSG00000035051	ProperStrand	50	1	-15.8787
chr13	29980065	29980085	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n29980063	NonProperStrand	1	chr9	123462082	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	18285490	18285535	protein_coding	Dgcr8	intron	ENSMUSG00000022718	ProperStrand	60	chr17	26087412	26087485	protein_coding	A930017K11Rik	intron	ENSMUSG00000025727	ProperStrand	6	1	-16.8916
chr9	106461265	106461309	protein_coding	Iqcf3	intron	ENSMUSG00000023577	NonProperStrand	51	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-7.9559
chr6	71604435	71604514	LTR	MYSERV6-int	ERVK	chr6MYSERV6-int71603198	NonProperStrand	3	chr4	86478549	86478618	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-19.2637
chr10	50843297	50843315	LTR	RMER17B	ERVK	chr10RMER17B50842950	ProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr11	8462335	8462446	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr2	3410873	3410893	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-9.9701
chr13	97190553	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr5	17776748	17776786	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-3.3206
chr12	55498282	55498307	LTR	RMER20B	ERVK	chr12RMER20B55497996	NonProperStrand	1	chr9	123461931	123462017	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	124932436	124932526	SINE	B1_Mur4	Alu	chr6B1_Mur4124932373	ProperStrand	9	chr6	124932524	124934004	SINE	B1_Mus1	Alu	chr6B1_Mus1124932562	NonProperStrand	8	8	-inf
chr2	121675841	121675967	LTR	RMER15-int	ERVL	chr2RMER15-int121675540	NonProperStrand	5	chr2	76852911	76853165	protein_coding	Ccdc141	exon	ENSMUSG00000044033	NonProperStrand	5	1	-inf
chr5	117431805	117431874	LTR	RMER19C	ERVK	chr5RMER19C117431476	ProperStrand	1	chr13	44869577	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr11	98454885	98454971	LTR	RLTR18B	ERVK	chr11RLTR18B98454799	NonProperStrand	4	chr17	39847173	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr12	59040436	59040523	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr6	51874488	51874545	protein_coding	Skap2	intron	ENSMUSG00000059182	ProperStrand	25	1	-11.8012
chr2	30078189	30078254	LTR	IAPEz-int	ERVK	chr2IAPEz-int30074345	ProperStrand	14	chr2	30073425	30073476	LTR	MYSERV6-int	ERVK	chr2MYSERV6-int30073130	NonProperStrand	1	1	-inf
chr16	20404617	20405392	protein_coding-noncoding	Abcc5	utr3	ENSMUSG00000022822	ProperStrand	8	chr16	20405874	20422384	protein_coding	Abcc5	intron	ENSMUSG00000022822	ProperStrand	63	1	-16.0589
chr14	30738044	30738132	LINE	L1Md_F2	L1	chr14L1Md_F230732679	ProperStrand	1	chr17	39846952	39847023	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
mmu-miR-292a-3p	0	24	miRNA	mmu-miR-292a-3p	.	mmu-miR-292a-3p	ProperStrand	6	chr12	112820368	112820492	protein_coding	Mark3	intron	ENSMUSG00000007411	NonProperStrand	25	1	-18.8476
chr17	39843508	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	65651252	65652426	protein_coding	Wdr19	intron	ENSMUSG00000037890	NonProperStrand	28	1	-3.9511
chr16	24533754	24533779	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr7	99123677	99123745	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-4.5950
chr17	18864667	18864767	Other	RMER1B	Other	chr17RMER1B18864209	ProperStrand	1	chr17	18727962	18728052	protein_coding	Vmn2r96	intron	ENSMUSG00000091679	NonProperStrand	1	1	-inf
chr1	167023741	167023819	SINE	B3A	B2	chr1B3A167023733	ProperStrand	2	chr6	28590182	28590262	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	2	-inf
chr15	83149719	83149792	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	chr2	126156081	126156144	protein_coding	Atp8b4	intron	ENSMUSG00000060131	NonProperStrand	14	6	-20.6648
chr16	59477110	59477202	protein_coding	Mina	utr3	ENSMUSG00000022724	ProperStrand	14	chr4	99904793	99904810	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	1	-16.2344
chr17	39847244	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	130726921	130728760	SINE	B4A	B4	chr3B4A130726790	NonProperStrand	4	1	-4.8204
chr2	5379271	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr11	22039583	22039673	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	1	-3.5328
chr16	92448880	92448970	protein_coding	Rcan1	intron	ENSMUSG00000022951	ProperStrand	210	chr1	77447029	77447129	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	1	-6.7583
chr17	39847163	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	161123825	161123842	LTR	MER21B	ERV1	chr2MER21B161123531	NonProperStrand	5	1	-4.3348
chrX	7934250	7934318	LINE	L1Md_F2	L1	chrXL1Md_F27933692	NonProperStrand	1	chr17	39847763	39847785	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	62604529	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr5	121205058	121205144	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-10.7038
chr15	6013262	6013336	LINE	Lx8	L1	chr15Lx86012806	NonProperStrand	1	chr17	39843652	39843716	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39847977	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	118577748	118577792	SINE	B1F1	Alu	chr14B1F1118577731	ProperStrand	1	1	-inf
chr4	70590177	70590261	LINE	Lx3_Mus	L1	chr4Lx3_Mus70587864	NonProperStrand	1	chr4	149443785	149443815	SINE	B1_Mm	Alu	chr4B1_Mm149443737	ProperStrand	1	1	-inf
chr10	81317767	81317826	LTR	RLTR19-int	ERVK	chr10RLTR19-int81317680	NonProperStrand	1	chr10	81319086	81319135	Unknown	MurSatRep1	Unknown	chr10MurSatRep181317888	ProperStrand	5	1	-inf
chr11	80217563	80217635	protein_coding-noncoding	Zfp207	utr5	ENSMUSG00000017421	ProperStrand	2	chr11	80213124	80213182	protein_coding	Zfp207	intron	ENSMUSG00000017421	ProperStrand	2	1	-19.8939
chr19	8709270	8709352	LTR	MMERVK10C-int	ERVK	chr19MMERVK10C-int8709035	ProperStrand	11	chr19	8707759	8707949	LTR	MTE2b	MaLR	chr19MTE2b8707711	ProperStrand	12	4	-inf
chr17	26068760	26068850	protein_coding-noncoding	Pigq	utr3	ENSMUSG00000025728	ProperStrand	19	chr17	26068638	26068738	protein_coding	Pigq	exon	ENSMUSG00000025728	ProperStrand	31	11	-23.2922
chr16	35986518	35986597	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr8	94064544	94064597	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	1	-8.2638
chr2	22744848	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	83941006	83941032	protein_coding	Bckdhb	intron	ENSMUSG00000032263	ProperStrand	63	1	-6.7116
chr8	47952098	47952202	LTR	RLTR40	ERVK	chr8RLTR4047951981	NonProperStrand	1	chr8	47951900	47951937	Simple_repeat	(CATATA)n	Simple_repeat	chr8(CATATA)n47951673	NonProperStrand	1	1	-inf
chr11	116008889	116008935	protein_coding	Fbf1	intron	ENSMUSG00000020776	ProperStrand	74	chr15	103351845	103351881	protein_coding	Pde1b	exon	ENSMUSG00000022489	NonProperStrand	30	4	-20.5698
chr11	12455445	12455487	LINE	Lx9	L1	chr11Lx912455327	NonProperStrand	2	chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr2	22744837	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr14	29990887	29990928	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	112	1	-5.5799
chr17	39847440	39848092	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	122357166	122357246	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	26	-3.1274
chr9	123925233	123925323	LTR	RMER6A	ERVK	chr9RMER6A123925201	NonProperStrand	1	chr9	124055354	124055454	protein_coding	Ccr5	intron	ENSMUSG00000079227	NonProperStrand	2	1	-inf
chr7	112904255	112904330	protein_coding	Dchs1	exon	ENSMUSG00000036862	NonProperStrand	19	chr4	86059787	86059808	protein_coding	Adamtsl1	intron	ENSMUSG00000066113	NonProperStrand	11	1	-17.8462
chr15	57949033	57949065	protein_coding	Atad2	intron	ENSMUSG00000022360	NonProperStrand	53	chr9	56495643	56495725	protein_coding	Lingo1	intron	ENSMUSG00000049556	NonProperStrand	17	1	-14.8313
chr11	26149226	26149277	LINE	Lx	L1	chr11Lx26145995	ProperStrand	1	chr17	39847155	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	78271760	78271808	LTR	RMER5	ERV1	chr11RMER578271322	NonProperStrand	13	chr11	78271993	78272094	SINE	B2_Mm2	B2	chr11B2_Mm278271977	NonProperStrand	1	1	-inf
chr16	81894727	81894817	LINE	Lx2	L1	chr16Lx281894672	NonProperStrand	2	chr16	81895069	81895168	LINE	Lx2	L1	chr16Lx281894672	ProperStrand	1	1	-inf
chr9	21140994	21141084	LTR	RMER19A	ERVK	chr9RMER19A21140913	ProperStrand	7	chr9	21140734	21140957	SINE	B2_Mm2	B2	chr9B2_Mm221140627	NonProperStrand	1	1	-inf
chr3	24697175	24697265	DNA	Tigger1	MER2_type	chr3Tigger124697184	ProperStrand	2	chr3	24697047	24697147	LINE	L1Md_A	L1	chr3L1Md_A24696934	ProperStrand	2	2	-inf
chr5	103591263	103591353	protein_coding-noncoding	Mapk10	utr3	ENSMUSG00000046709	NonProperStrand	5	chr5	103591350	103593603	protein_coding	Mapk10	intron	ENSMUSG00000046709	NonProperStrand	49	5	-inf
chr3	56047208	56047236	LINE	L2	L2	chr3L256047079	NonProperStrand	1	chr17	39846721	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	179517952	179517985	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int179517055	NonProperStrand	14	chr13	23555655	23555678	protein_coding	Btn1a1	utr3	ENSMUSG00000000706	NonProperStrand	212	1	-12.4535
chr10	110579023	110579113	LTR	ORR1A2	MaLR	chr10ORR1A2110578893	ProperStrand	1	chr10	110579304	110579404	SINE	ID_B1	B4	chr10ID_B1110579281	ProperStrand	1	1	-inf
chr2	70677903	70677993	SINE	B1_Mur1	Alu	chr2B1_Mur170677904	NonProperStrand	4	chr2	70677989	70678089	SINE	B1_Mus1	Alu	chr2B1_Mus170678000	ProperStrand	4	4	-inf
chr2	36906353	36906453	LINE	Lx3C	L1	chr2Lx3C36906279	NonProperStrand	1	chr2	36906046	36906136	LTR	RLTR19C	ERVK	chr2RLTR19C36905744	NonProperStrand	1	1	-inf
chr7	25670163	25670263	protein_coding-noncoding	Rps19	utr5	ENSMUSG00000040952	ProperStrand	10	chr7	25670057	25670147	protein_coding	Rps19	exon	ENSMUSG00000040952	ProperStrand	3	1	-20.3349
chr15	97396629	97396729	SINE	B4	B4	chr15B497396513	ProperStrand	1	chr15	97396201	97396291	SINE	ID_B1	B4	chr15ID_B197396086	NonProperStrand	1	1	-inf
chr4	119485549	119485621	protein_coding	Hivep3	intron	ENSMUSG00000028634	NonProperStrand	21	chr3	104818143	104818194	protein_coding	Cttnbp2nl	intron	ENSMUSG00000062127	ProperStrand	31	1	-15.4925
chr9	110281321	110281347	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr8	119535761	119535777	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	NonProperStrand	3	1	-13.9209
chr7	143269896	143269953	LINE	L1_Mur3	L1	chr7L1_Mur3143269356	NonProperStrand	1	chr17	80926952	80926991	protein_coding	Cdkl4	intron	ENSMUSG00000033966	ProperStrand	5	1	-inf
chr4	140241767	140241857	LTR	RMER5	ERV1	chr4RMER5140241664	ProperStrand	1	chr4	140241572	140241672	SINE	ID_B1	B4	chr4ID_B1140241470	ProperStrand	1	1	-inf
chr11	102811195	102811257	lincRNA	Gm17536	intron	ENSMUSG00000091056	NonProperStrand	62	chr14	47399755	47399774	protein_coding	Cnih	intron	ENSMUSG00000015759	ProperStrand	19	1	-14.2938
chr16	32631027	32631065	protein_coding	Tfrc	utr3	ENSMUSG00000022797	ProperStrand	40	chr5	130243615	130243663	protein_coding	Gbas	intron	ENSMUSG00000029432	ProperStrand	48	1	-13.2916
chr1	63179087	63179136	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr3	153599823	153599932	protein_coding	Acadm	intron	ENSMUSG00000062908	ProperStrand	41	1	-12.3426
chr4	132270079	132270118	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr15	73634312	73634405	protein_coding	Gm628	intron	ENSMUSG00000072487	ProperStrand	110	1	-9.6066
chr3	27661831	27661931	LINE	L2b	L2	chr3L2b27661769	NonProperStrand	1	chr17	39847889	39847979	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847453	39848031	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	11	-5.7244
chr17	39847181	39847276	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	78175379	78175485	protein_coding	Omt2b	utr5	ENSMUSG00000038750	NonProperStrand	30	3	-3.6849
chr17	83482884	83482942	LTR	MLT1K	MaLR	chr17MLT1K83482830	ProperStrand	1	chr9	123462122	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	84140708	84140734	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	chr15	53150702	53150793	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	1	-8.0732
chr17	12279716	12279806	SINE	B3	B2	chr17B312279666	ProperStrand	2	chr17	12315803	12315903	protein_coding	Agpat4	intron	ENSMUSG00000023827	NonProperStrand	15	2	-inf
chr17	39844722	39844753	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr8	114733410	114733501	LTR	MTC	MaLR	chr8MTC114733102	ProperStrand	5	1	-7.4813
chr4	111707193	111707283	LINE	L1Md_F2	L1	chr4L1Md_F2111703711	NonProperStrand	1	chr4	111707623	111707723	LINE	L1Md_F2	L1	chr4L1Md_F2111707299	NonProperStrand	1	1	-inf
chr17	24101483	24101573	LTR	ORR1A2	MaLR	chr17ORR1A224101471	ProperStrand	2	chr17	24101388	24101488	SINE	B4A	B4	chr17B4A24101269	NonProperStrand	1	1	-inf
chr17	12771995	12772042	LTR	MER21-int	ERV1	chr17MER21-int12771918	NonProperStrand	1	chr17	12777074	12777166	protein_coding	Slc22a2	utr5	ENSMUSG00000040966	ProperStrand	12	1	-inf
chr10	128048104	128048311	LINE	Lx7	L1	chr10Lx7128047532	ProperStrand	18	chr13	100480097	100480197	LTR	MERVL-int	ERVL	chr13MERVL-int100479821	NonProperStrand	5	3	-inf
chr2	150463707	150463807	protein_coding-noncoding	Acss1	utr3	ENSMUSG00000027452	ProperStrand	1	chr2	150464185	150464275	protein_coding	Acss1	exon	ENSMUSG00000027452	ProperStrand	16	1	-inf
chr2	22744865	22744905	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	43492923	43492953	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	37	1	-7.7736
chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	65075970	65076057	SINE	RSINE1	B4	chr14RSINE165075943	NonProperStrand	1	1	-inf
chr5	110389544	110389634	Low_complexity	AT_rich	Low_complexity	chr5AT_rich110389565	NonProperStrand	1	chr5	110389440	110389540	SINE	B1_Mm	Alu	chr5B1_Mm110389415	ProperStrand	2	1	-inf
chr11	64733120	64733220	LTR	ORR1B1	MaLR	chr11ORR1B164732831	ProperStrand	1	chr11	64733455	64733545	Low_complexity	CT-rich	Low_complexity	chr11CT-rich64733454	NonProperStrand	1	1	-inf
chr2	163299165	163299265	DNA	Charlie21a	MER1_type	chr2Charlie21a163299064	ProperStrand	1	chr2	163298905	163298995	SINE	RSINE1	B4	chr2RSINE1163298896	ProperStrand	1	1	-inf
chr4	83201123	83201223	protein_coding-noncoding	4930473A06Rik	utr5	ENSMUSG00000052407	NonProperStrand	1	chr4	83201408	83201498	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-inf
chr14	54567678	54567778	LINE	L1Md_T	L1	chr14L1Md_T54567353	NonProperStrand	3	chr9	59791781	59791871	protein_coding	Nr2e3	intron	ENSMUSG00000032292	NonProperStrand	5	2	-inf
chr17	39848020	39848048	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	95321623	95321641	SINE	B3A	B2	chr3B3A95321542	NonProperStrand	1	1	-inf
chr2	27146381	27146471	protein_coding	Vav2	intron	ENSMUSG00000009621	NonProperStrand	14	chr8	3946282	3946382	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	1	-18.4017
chr17	39847174	39847238	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	110329660	110330979	LTR	RLTR4_MM-int	ERV1	chr5RLTR4_MM-int110330308	NonProperStrand	1	1	-inf
chr14	40937040	40937109	LINE	L1Md_F2	L1	chr14L1Md_F240934968	NonProperStrand	3	chr17	39846453	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr15	45940343	45940433	LTR	RLTR13D6	ERVK	chr15RLTR13D645939532	ProperStrand	1	chr15	45940620	45940720	SINE	B1_Mus1	Alu	chr15B1_Mus145940573	ProperStrand	1	1	-inf
chr9	123461822	123461912	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr9	44486152	44486252	protein_coding	Treh	intron	ENSMUSG00000032098	ProperStrand	5	2	-9.8714
chr18	38752671	38752771	protein_coding	Spry4	intron	ENSMUSG00000024427	NonProperStrand	2	chr18	38771589	38771679	protein_coding	Arhgap26	intron	ENSMUSG00000036452	ProperStrand	171	1	-17.3956
chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	120914780	120914897	protein_coding	Sectm1b	utr3	ENSMUSG00000039364	ProperStrand	5	1	-3.1907
chr16	8935750	8935840	LTR	ORR1D-int	MaLR	chr16ORR1D-int8935729	NonProperStrand	1	chr5	110368169	110368269	protein_coding	Gm15446	intron	ENSMUSG00000090015	NonProperStrand	24	1	-inf
chr16	33957215	33957295	protein_coding	Umps	intron	ENSMUSG00000022814	ProperStrand	19	chr9	94843286	94843312	protein_coding	Slc9a9	intron	ENSMUSG00000031129	NonProperStrand	17	1	-16.8639
chr4	121167990	121168058	LINE	L1Md_A	L1	chr4L1Md_A121167063	NonProperStrand	3	chr11	85615201	85615294	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-15.8356
chr2	122700228	122700313	LINE	L1M3	L1	chr2L1M3122699753	ProperStrand	1	chr2	122701817	122701864	LTR	RMER6A	ERVK	chr2RMER6A122701516	ProperStrand	1	1	-inf
chr13	100703361	100703388	LTR	ORR1D1	MaLR	chr13ORR1D1100703302	ProperStrand	1	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr15	51148879	51148898	DNA	MER3	MER1_type	chr15MER351148862	NonProperStrand	1	chr11	88487203	88487326	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-inf
chr13	69721815	69721893	protein_coding	Srd5a1	intron	ENSMUSG00000021594	ProperStrand	1	chr17	24665960	24665985	protein_coding	Rab26	intron	ENSMUSG00000079657	NonProperStrand	3	1	-inf
chr17	35086107	35086207	SINE	B2_Mm1a	B2	chr17B2_Mm1a35086101	NonProperStrand	1	chr17	35086538	35086628	SINE	B2_Mm2	B2	chr17B2_Mm235086475	ProperStrand	1	1	-inf
chr17	39848484	39848588	LINE	L1Md_T	L1	chr17L1Md_T39848464	NonProperStrand	9	chr14	68630625	68630642	LTR	IAPEz-int	ERVK	chr14IAPEz-int68625244	NonProperStrand	1	1	-inf
chr16	89789590	89793100	protein_coding-noncoding	Tiam1	utr3	ENSMUSG00000002489	ProperStrand	4	chr16	89793139	89794732	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	4	-inf
chr19	9892892	9892924	LINE	L1Md_F2	L1	chr19L1Md_F29892644	NonProperStrand	16	chr19	9891224	9891321	LINE	Lx2	L1	chr19Lx29891246	NonProperStrand	3	1	-inf
chr6	38511895	38511912	protein_coding	Luc7l2	intron	ENSMUSG00000029823	ProperStrand	46	chr8	83928239	83928290	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-7.0444
chr7	25661295	25661371	protein_coding	Dmrtc2	intron	ENSMUSG00000011349	ProperStrand	6	chr15	83149759	83149799	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-15.1089
chr7	105378991	105379081	protein_coding-noncoding	Acer3	utr3	ENSMUSG00000030760	ProperStrand	4	chr7	105378896	105379009	protein_coding	Acer3	intron	ENSMUSG00000030760	ProperStrand	49	4	-inf
chr13	6575119	6575164	protein_coding	Pitrm1	intron	ENSMUSG00000021193	ProperStrand	23	chr17	28330915	28331031	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	108	1	-12.7839
chr5	65294823	65294913	LTR	RLTR1B-int	ERV1	chr5RLTR1B-int65294803	ProperStrand	5	chr5	65294729	65294829	SINE	B2_Mm1a	B2	chr5B2_Mm1a65294621	NonProperStrand	3	3	-inf
chr9	65838691	65838710	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	ProperStrand	13	chr17	24721249	24721708	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	2	-19.0620
chr18	61725671	61725762	protein_coding	Csnk1a1	intron	ENSMUSG00000024576	NonProperStrand	46	chr3	88879303	88879350	protein_coding	Ash1l	intron	ENSMUSG00000028053	ProperStrand	44	1	-13.1854
chr6	142756949	142757025	LINE	L1M4b	L1	chr6L1M4b142756891	ProperStrand	1	chr17	39846415	39846463	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	19465655	19465745	LINE	L1_Mur1	L1	chr19L1_Mur119465594	ProperStrand	1	chr19	19465164	19465263	LINE	L1_Mur2	L1	chr19L1_Mur219464373	NonProperStrand	2	1	-inf
chr16	33291843	33294687	protein_coding	Snx4	intron	ENSMUSG00000022808	ProperStrand	21	chr17	22184764	22184864	protein_coding	Zfp943	intron	ENSMUSG00000053347	NonProperStrand	10	1	-17.7681
chr17	56322736	56323030	protein_coding-noncoding	D17Wsu104e	utr3	ENSMUSG00000019579	NonProperStrand	25	chr17	56322542	56323230	protein_coding	D17Wsu104e	intron	ENSMUSG00000019579	NonProperStrand	80	11	-inf
chr5	89914115	89914215	LTR	RLTR15	ERVK	chr5RLTR1589913984	ProperStrand	1	chr5	89914280	89914370	LTR	RLTR15	ERVK	chr5RLTR1589914276	ProperStrand	1	1	-inf
chr10	42348303	42348376	protein_coding	Ostm1	intron	ENSMUSG00000038280	NonProperStrand	116	chr2	29844715	29844797	protein_coding	Spna2	intron	ENSMUSG00000057738	ProperStrand	19	1	-13.0323
chr15	81033398	81033430	SINE	B1_Mm	Alu	chr15B1_Mm81033337	NonProperStrand	1	chr9	123461884	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	88135259	88135359	SINE	B1F2	Alu	chr6B1F288135248	NonProperStrand	1	chr6	88135115	88135205	SINE	B1_Mus1	Alu	chr6B1_Mus188135092	NonProperStrand	1	1	-inf
chr14	18720457	18720484	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr9	110245142	110245159	protein_coding	Scap	intron	ENSMUSG00000032485	NonProperStrand	3	1	-16.3302
chr2	39003610	39003646	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	chr2	60378641	60378743	protein_coding	Pla2r1	intron	ENSMUSG00000054580	ProperStrand	69	1	-11.5193
chr18	74572958	74573048	LTR	MTA_Mm	MaLR	chr18MTA_Mm74572735	ProperStrand	1	chr18	75165929	75166029	protein_coding	BC031181	intron	ENSMUSG00000036299	NonProperStrand	1	1	-inf
chr5	146272757	146272836	LINE	L1Md_A	L1	chr5L1Md_A146267485	ProperStrand	17	chr5	146277719	146277789	LINE	L1Md_F2	L1	chr5L1Md_F2146277668	NonProperStrand	11	2	-20.9164
chr5	74494258	74494358	Simple_repeat	(TCC)n	Simple_repeat	chr5(TCC)n74494276	NonProperStrand	2	chr2	150242423	150242513	protein_coding	Zfp442	intron	ENSMUSG00000068130	ProperStrand	9	2	-inf
chr13	12767130	12767230	LTR	RLTR33	ERVK	chr13RLTR3312767084	NonProperStrand	1	chr13	12795979	12796069	SINE	ID	ID	chr13ID12796000	NonProperStrand	1	1	-inf
chr1	9940616	9940706	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr19	61137455	61137556	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	16	1	-17.6629
chr3	18513203	18513293	LTR	RLTR45-int	ERVK	chr3RLTR45-int18512631	NonProperStrand	1	chr3	18513512	18513612	LTR	RLTR45	ERVK	chr3RLTR4518513313	NonProperStrand	1	1	-inf
chr1	54428912	54430563	LINE	Lx3_Mus	L1	chr1Lx3_Mus54430445	ProperStrand	3	chr17	39846428	39846462	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-8.0300
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	39499301	39499428	protein_coding	Rev3l	intron	ENSMUSG00000019841	ProperStrand	81	1	-4.4853
chr15	79094353	79094386	protein_coding	Baiap2l2	intron	ENSMUSG00000018126	NonProperStrand	26	chr15	79084138	79084247	protein_coding	Pick1	intron	ENSMUSG00000068206	ProperStrand	8	1	-17.9338
chr8	87840019	87840119	LTR	RLTR18B	ERVK	chr8RLTR18B87839954	ProperStrand	1	chr8	87840146	87840236	LTR	RMER17B	ERVK	chr8RMER17B87840122	NonProperStrand	1	1	-inf
chr4	149522539	149522581	SINE	PB1D10	Alu	chr4PB1D10149522528	NonProperStrand	1	chr4	149523210	149523295	protein_coding	Slc2a7	intron	ENSMUSG00000062064	ProperStrand	23	1	-inf
chr7	16413068	16413168	LINE	L1_Mur2	L1	chr7L1_Mur216413062	NonProperStrand	3	chr7	16412938	16413028	SINE	B2_Mm2	B2	chr7B2_Mm216412861	ProperStrand	3	3	-inf
chr18	56696953	56697053	protein_coding-noncoding	Aldh7a1	utr3	ENSMUSG00000053644	NonProperStrand	1	chr18	56696694	56696784	protein_coding	Aldh7a1	intron	ENSMUSG00000053644	NonProperStrand	85	1	-inf
chr18	26619907	26620007	LINE	Lx3B	L1	chr18Lx3B26618593	NonProperStrand	1	chr18	26620116	26620206	LINE	Lx3B	L1	chr18Lx3B26620052	NonProperStrand	1	1	-inf
chr13	21715779	21715873	LINE	Lx7	L1	chr13Lx721715740	NonProperStrand	14	chr17	39846783	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	6	-11.0291
chr1	33462884	33462946	LINE	L1M4b	L1	chr1L1M4b33462856	ProperStrand	1	chr1	33463087	33463148	LINE	L1Md_F2	L1	chr1L1Md_F233462946	ProperStrand	1	1	-inf
chr17	39846450	39846760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	91930880	91931736	lincRNA	Gm13780	intron	ENSMUSG00000087197	ProperStrand	19	3	-3.2776
chr2	180467091	180467578	protein_coding-noncoding	Slc17a9	utr5	ENSMUSG00000023393	ProperStrand	2	chr2	180464818	180465676	protein_coding	Slc17a9	intron	ENSMUSG00000023393	ProperStrand	21	2	-inf
chr1	161037644	161037675	LINE	L1MEc	L1	chr1L1MEc161037551	ProperStrand	11	chr12	105841619	105841712	LTR	ORR1E	MaLR	chr12ORR1E105841536	NonProperStrand	2	2	-inf
chr17	39846428	39847016	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	125711868	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	7	-3.2060
chr13	73798961	73799622	LTR	MLT1D	MaLR	chr13MLT1D73798848	ProperStrand	1	chr13	73799674	73800426	protein_coding	Slc6a18	utr3	ENSMUSG00000021612	NonProperStrand	42	1	-inf
chr17	39848158	39848199	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	32491276	32491361	SINE	B1F	Alu	chr5B1F32491235	NonProperStrand	1	1	-inf
chr13	44128774	44128874	Low_complexity	GA-rich	Low_complexity	chr13GA-rich44128757	ProperStrand	1	chr13	44128505	44128595	SINE	ID_B1	B4	chr13ID_B144128517	ProperStrand	1	1	-inf
chr19	41944410	41944446	protein_coding	Rrp12	intron	ENSMUSG00000035049	ProperStrand	51	chr7	131371226	131371340	sense_intronic	Gm15338	.	ENSMUSG00000085899	ProperStrand	34	1	-13.5005
chr4	150901084	150903835	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr15	99035485	99035576	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	1	-9.4762
chr17	39843589	39843654	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr15	80012206	80012283	protein_coding	Mgat3	intron	ENSMUSG00000042428	NonProperStrand	17	2	-8.1902
chr2	168297877	168297967	LTR	MLT1D	MaLR	chr2MLT1D168297694	NonProperStrand	1	chr2	168297390	168297490	LTR	MTB	MaLR	chr2MTB168297223	ProperStrand	1	1	-inf
chr5	29653518	29653572	protein_coding	Lmbr1	intron	ENSMUSG00000010721	NonProperStrand	89	chr18	25387360	25387421	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	1	-11.6795
chr15	45926442	45926532	LINE	L1_Mus3	L1	chr15L1_Mus345926408	NonProperStrand	1	chr15	45926233	45926333	LTR	MTE2a	MaLR	chr15MTE2a45926194	NonProperStrand	1	1	-inf
chrX	98149568	98149584	protein_coding	Tex11	intron	ENSMUSG00000009670	NonProperStrand	2	chr16	14445887	14445998	protein_coding	Abcc1	intron	ENSMUSG00000023088	ProperStrand	122	1	-17.9330
chr10	23090451	23090541	LINE	L1M4	L1	chr10L1M423090423	NonProperStrand	1	chr10	23090231	23090331	LTR	MTC	MaLR	chr10MTC23090015	NonProperStrand	1	1	-inf
chr2	5379293	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr11	102533192	102533232	protein_coding	Gm1564	intron	ENSMUSG00000051455	NonProperStrand	16	1	-7.1646
chr17	39846328	39847014	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	105238374	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	6	-3.6369
chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr4	132309474	132309540	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-7.4308
chr17	28400216	28400267	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	chr7	111076068	111076129	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-10.0805
chr19	10612933	10613011	protein_coding	Cpsf7	intron	ENSMUSG00000034820	ProperStrand	82	chr17	15089483	15089565	protein_coding	1600012H06Rik	intron	ENSMUSG00000050088	ProperStrand	2	1	-18.8359
chr8	74688689	74688733	protein_coding	Rab8a	intron	ENSMUSG00000003037	NonProperStrand	2	chr9	110940299	110940398	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-18.4181
chr18	82978542	82978651	SINE	B4	B4	chr18B482978487	ProperStrand	1	chr13	97190561	97190605	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr16	22383833	22383895	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.1864
chr2	34815797	34815912	protein_coding	Traf1	intron	ENSMUSG00000026875	ProperStrand	12	chr13	97190592	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-13.4126
chr4	91235484	91235527	Simple_repeat	(TTTTTG)n	Simple_repeat	chr4(TTTTTG)n91235487	NonProperStrand	1	chr4	101442764	101442846	protein_coding	Lepr	intron	ENSMUSG00000057722	ProperStrand	109	1	-inf
chr12	78350928	78350961	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr1	131929736	131931094	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-3.0113
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	119288914	119292842	protein_coding	Rnf213	exon	ENSMUSG00000070327	NonProperStrand	25	1	-8.5647
chr17	39847846	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	61673056	61673103	Other	RMER1B	Other	chr8RMER1B61672757	NonProperStrand	1	1	-inf
chr6	91754425	91754510	protein_coding	Grip2	intron	ENSMUSG00000030098	NonProperStrand	217	chr3	90279824	90279842	tRNA	tRNA792-MetCAT	.	243572	NonProperStrand	1	1	-inf
chr17	39847172	39847239	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	178105855	178105872	protein_coding	Sycp2	intron	ENSMUSG00000060445	ProperStrand	5	1	-4.3348
chr18	65572042	65572118	LINE	L1M5	L1	chr18L1M565571887	NonProperStrand	1	chr17	39847438	39847499	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	74314315	74314415	DNA	Tigger7	MER2_type	chr17Tigger774314196	NonProperStrand	1	chr17	74314435	74314525	DNA	Tigger7	MER2_type	chr17Tigger774314404	NonProperStrand	1	1	-inf
chr13	13060113	13060203	LINE	L1Md_F2	L1	chr13L1Md_F213059058	ProperStrand	1	chr13	13060242	13060342	LINE	L1Md_F2	L1	chr13L1Md_F213060221	ProperStrand	1	1	-inf
chr1	122342568	122342668	LTR	RMER12	ERVK	chr1RMER12122342199	NonProperStrand	1	chr1	122342822	122342912	LTR	RMER12	ERVK	chr1RMER12122342751	NonProperStrand	1	1	-inf
chr18	90420582	90420672	LINE	L1_Mur2	L1	chr18L1_Mur290420363	NonProperStrand	1	chr18	90420095	90420195	SINE	B4A	B4	chr18B4A90420009	ProperStrand	1	1	-inf
chr2	59161105	59214744	LINE	L1MA6	L1	chr2L1MA659211699	ProperStrand	6	chr2	59214746	59266419	LINE	L1MA6	L1	chr2L1MA659214505	ProperStrand	16	6	-inf
chr4	148134326	148134415	LINE	L1MD3	L1	chr4L1MD3148134303	NonProperStrand	1	chr4	148134001	148134101	SINE	B1_Mus1	Alu	chr4B1_Mus1148133998	ProperStrand	1	1	-inf
chr14	108819014	108819114	LINE	L1Md_T	L1	chr14L1Md_T108818952	ProperStrand	1	chr14	108818847	108818937	LINE	Lx7	L1	chr14Lx7108818596	NonProperStrand	1	1	-inf
chr17	78707447	78707497	protein_coding	Crim1	intron	ENSMUSG00000024074	NonProperStrand	26	chr2	75829786	75829813	protein_coding	Pde11a	intron	ENSMUSG00000075270	ProperStrand	15	1	-16.5414
chr5	62694891	62694933	LINE	Lx5	L1	chr5Lx562694718	ProperStrand	1	chr10	78327228	78327303	LTR	RLTR6-int	ERV1	chr10RLTR6-int78322729	ProperStrand	12	1	-inf
chr8	47878980	47879072	protein_coding	Irf2	intron	ENSMUSG00000031627	NonProperStrand	109	chr3	94535291	94535315	pseudogene	Gm15264	.	ENSMUSG00000081355	ProperStrand	9	1	-14.7186
chr4	40279280	40279335	LINE	L1Md_F2	L1	chr4L1Md_F240278653	NonProperStrand	1	chr17	39843401	39843491	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr11	120963946	120963972	LINE	Lx8	L1	chr11Lx8120963661	NonProperStrand	5	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-11.7142
chr10	7615936	7616026	LTR	MMERVK10C-int	ERVK	chr10MMERVK10C-int7615735	ProperStrand	1	chr6	6060851	6060921	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	1	-inf
chr13	74050094	74050176	protein_coding	Trip13	utr3	ENSMUSG00000021569	ProperStrand	9	chr17	8385965	8385981	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-17.9614
chr15	58999677	58999710	Low_complexity	LTR82B	ERVL	chr15LTR82B58999591	NonProperStrand	1	chr9	98323837	98323935	protein_coding	Rbp1	utr5	ENSMUSG00000046402	ProperStrand	3	1	-inf
chr10	14019440	14019537	LINE	L1VL4	L1	chr10L1VL414019441	ProperStrand	1	chr4	145005450	145005502	processed_transcript	Gm13227	.	ENSMUSG00000085101	NonProperStrand	42	1	-inf
chr3	93867015	93867115	LTR	RMER16-int	ERVK	chr3RMER16-int93866221	NonProperStrand	1	chr3	93867532	93867622	LTR	RMER16-int	ERVK	chr3RMER16-int93867338	NonProperStrand	1	1	-inf
chr4	40145821	40145860	protein_coding	Aco1	utr3	ENSMUSG00000028405	ProperStrand	3	chr4	40156199	40156228	protein_coding	Ddx58	intron	ENSMUSG00000040296	NonProperStrand	18	1	-23.1775
chr3	96111028	96111104	LTR	LTR87	ERVL?	chr3LTR8796110983	ProperStrand	1	chr3	96110847	96110927	SINE	B1_Mur4	Alu	chr3B1_Mur496110844	NonProperStrand	1	1	-inf
chr12	19853592	19853682	LTR	ORR1A2	MaLR	chr12ORR1A219853597	ProperStrand	1	chr12	21026068	21026168	protein_coding	Asap2	intron	ENSMUSG00000052632	ProperStrand	137	1	-inf
chr10	62477777	62477837	protein_coding	Hnrnph3	utr3	ENSMUSG00000020069	ProperStrand	9	chr9	123462079	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr9	40399049	40399139	DNA	Tigger5	MER2_type	chr9Tigger540399051	NonProperStrand	1	chr9	40398927	40399028	LINE	Lx9	L1	chr9Lx940398520	ProperStrand	1	1	-inf
chr13	44869574	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr14	14739836	14739853	protein_coding	Gm281	intron	ENSMUSG00000084902	ProperStrand	6	1	-9.1686
chr17	39848197	39848257	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	96791917	96792015	protein_coding	Sv2c	intron	ENSMUSG00000051111	NonProperStrand	14	1	-4.0485
chr11	55470475	55470504	LINE	L1MA5	L1	chr11L1MA555470324	NonProperStrand	2	chr13	44869595	44869714	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr17	94831843	94831933	LINE	L1Md_T	L1	chr17L1Md_T94831794	NonProperStrand	1	chr17	94831708	94831808	LTR	MTC	MaLR	chr17MTC94831510	ProperStrand	1	1	-inf
chr3	46504738	46504838	LINE	L1_Mur3	L1	chr3L1_Mur346504658	ProperStrand	1	chr3	46504014	46504104	LINE	Lx8	L1	chr3Lx846503926	ProperStrand	1	1	-inf
chr1	167237563	167237584	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	chr7	4808675	4808782	protein_coding	Isoc2b	intron	ENSMUSG00000052605	ProperStrand	64	1	-9.6892
chr5	115490340	115490395	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr9	78478658	78478723	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-4.7031
chr6	149313060	149313141	LTR	LTRIS2	ERV1	chr6LTRIS2149312955	NonProperStrand	2	chr4	43492784	43492844	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-14.5459
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	65201724	65201752	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-5.6260
chr17	39847385	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	36854931	36857852	Other	RMER1A	Other	chr19RMER1A36856955	NonProperStrand	2	1	-5.4040
chr14	107516180	107516280	LINE	Lx2	L1	chr14Lx2107516186	NonProperStrand	1	chr14	107515993	107516083	Simple_repeat	(TA)n	Simple_repeat	chr14(TA)n107515989	ProperStrand	1	1	-inf
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	23458119	23459141	processed_transcript	Gm12060	.	ENSMUSG00000085415	NonProperStrand	1	1	-inf
chr5	146261024	146261046	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	56849695	56850571	protein_coding	Nt5c3	intron	ENSMUSG00000029780	NonProperStrand	13	1	-8.1236
chr16	51642867	51642961	LTR	LTRIS2	ERV1	chr16LTRIS251642622	NonProperStrand	2	chrX	123150734	123150788	LTR	RLTR45-int	ERVK	chrXRLTR45-int123150544	NonProperStrand	2	2	-inf
chr14	18268653	18268702	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18268563	ProperStrand	1	chr17	39847552	39847579	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	123462100	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	23857126	23857208	protein_coding	Smap1	intron	ENSMUSG00000026155	ProperStrand	16	1	-3.4729
chr11	68820433	68820526	protein_coding	Pfas	intron	ENSMUSG00000020899	ProperStrand	51	chr4	48273531	48273589	protein_coding	Erp44	intron	ENSMUSG00000028343	ProperStrand	37	1	-13.3285
chr6	6096595	6096685	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr5	21050269	21050369	protein_coding	Fbxl13	intron	ENSMUSG00000048520	ProperStrand	33	1	-10.6421
chr18	36358725	36358823	SINE	B1_Mm	Alu	chr18B1_Mm36358727	NonProperStrand	1	chr9	123462108	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	23111618	23111718	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	123	chr4	85231700	85231790	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	1	-9.2414
chr15	99310014	99314598	LTR	ORR1C1	MaLR	chr15ORR1C199309909	NonProperStrand	1	chr17	39846759	39846823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	30895285	30895551	protein_coding	Sntg2	intron	ENSMUSG00000020672	ProperStrand	22	chr3	25732024	25732290	protein_coding	Nlgn1	intron	ENSMUSG00000063887	NonProperStrand	13	2	-inf
chr5	67468972	67469001	SINE	ID_B1	B4	chr5ID_B167468977	NonProperStrand	1	chr11	73069179	73069198	protein_coding	Trpv1	intron	ENSMUSG00000005952	ProperStrand	10	1	-inf
chr3	95783898	95783988	SINE	B1_Mus1	Alu	chr3B1_Mus195783866	ProperStrand	1	chr3	95783564	95783664	SINE	B4	B4	chr3B495783566	ProperStrand	1	1	-inf
chr12	99896181	99896270	protein_coding	Spata7	intron	ENSMUSG00000021007	ProperStrand	45	chr13	97190562	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-9.2919
chr17	39846588	39847124	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	146299473	146299492	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	NonProperStrand	19	3	-3.2776
chr8	71489836	71489936	LTR	IAPLTR2b	ERVK	chr8IAPLTR2b71489805	NonProperStrand	2	chr8	71489735	71489825	LTR	RMER6A	ERVK	chr8RMER6A71489616	ProperStrand	2	2	-inf
chr17	22358633	22358687	LINE	L1_Mur3	L1	chr17L1_Mur322358422	NonProperStrand	1	chr16	96206662	96214024	protein_coding	Brwd1	utr3	ENSMUSG00000022914	NonProperStrand	3	1	-inf
chr17	39847166	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	83672813	83674355	SINE	B3	B2	chr12B383672817	NonProperStrand	1	1	-inf
chr3	27709235	27709279	Other	RMER1C	Other	chr3RMER1C27709223	ProperStrand	5	chr2	5379247	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.6307
chr1	56663128	56663228	LTR	ORR1D2-int	MaLR	chr1ORR1D2-int56662244	NonProperStrand	1	chr1	56663535	56663625	LTR	ORR1D2	MaLR	chr1ORR1D256663353	NonProperStrand	1	1	-inf
chr12	111898445	111898544	protein_coding	Dync1h1	intron	ENSMUSG00000018707	NonProperStrand	26	chr14	24455864	24455919	protein_coding	Kcnma1	intron	ENSMUSG00000063142	ProperStrand	191	1	-11.3911
chr2	87017126	87017226	LINE	Lx5	L1	chr2Lx587015926	NonProperStrand	1	chr2	87017360	87017450	LTR	MERVL_2A-int	ERVL	chr2MERVL_2A-int87017284	NonProperStrand	1	1	-inf
chr1	128079996	128080096	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	chr1	128269762	128269852	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-7.2093
chr11	109011675	109011711	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	151414381	151414471	protein_coding	Nol9	intron	ENSMUSG00000028948	NonProperStrand	10	1	-9.7335
chr15	98710975	98711065	protein_coding-noncoding	Rhebl1	utr3	ENSMUSG00000023755	ProperStrand	1	chr15	98710866	98710966	protein_coding	Rhebl1	intron	ENSMUSG00000023755	ProperStrand	1	1	-inf
chr17	39847611	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	91591227	91591264	LTR	RLTR42-int	ERVK	chr8RLTR42-int91590879	ProperStrand	4	1	-3.7035
chr2	24838288	24838333	protein_coding	Pnpla7	intron	ENSMUSG00000036833	NonProperStrand	78	chr14	122960107	122960151	protein_coding	Pcca	intron	ENSMUSG00000041650	NonProperStrand	44	1	-12.1206
chr6	148992568	148992586	protein_coding	Dennd5b	intron	ENSMUSG00000030313	NonProperStrand	7	chr16	22141317	22141448	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-14.3634
chr5	146261174	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	37943707	37944163	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	1	-3.8737
chr2	35665107	35665230	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	chr19	12011075	12011100	protein_coding	Patl1	intron	ENSMUSG00000046139	NonProperStrand	6	1	-12.4286
chr18	49312827	49312927	LINE	L1MDa	L1	chr18L1MDa49312811	NonProperStrand	1	chr18	49312999	49313089	LINE	L1MDa	L1	chr18L1MDa49313000	NonProperStrand	1	1	-inf
chr6	3201509	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	85040581	85040667	SINE	PB1D10	Alu	chr2PB1D1085040600	NonProperStrand	2	2	-inf
chr11	57553537	57553556	protein_coding	Galnt10	intron	ENSMUSG00000020520	NonProperStrand	21	chr5	108068250	108068357	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	1	-13.2071
chr2	5379242	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr13	12431047	12431691	protein_coding	Actn2	intron	ENSMUSG00000052374	ProperStrand	3	1	-10.8312
chr17	39846580	39846648	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	11734439	11734498	protein_coding	Plac1l	intron	ENSMUSG00000055895	ProperStrand	2	1	-5.3533
chr19	4903028	4903727	protein_coding	Bbs1	exon	ENSMUSG00000006464	ProperStrand	11	chr6	119585461	119585511	protein_coding	Erc1	intron	ENSMUSG00000030172	ProperStrand	98	1	-14.5063
chr18	14962513	14962640	protein_coding	Taf4b	intron	ENSMUSG00000054321	ProperStrand	4	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-14.3048
chr17	39847611	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	136034104	136034229	protein_coding	Chit1	intron	ENSMUSG00000026450	ProperStrand	16	3	-3.9541
chr12	80222170	80222233	SINE	B3	B2	chr12B380222074	ProperStrand	1	chr11	3152743	3152796	protein_coding	Drg1	exon	ENSMUSG00000020457	ProperStrand	73	1	-inf
chr2	165295109	165295313	protein_coding	Slc13a3	intron	ENSMUSG00000018459	ProperStrand	44	chr4	119133340	119133404	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-8.3544
chr17	39848153	39848197	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	57716196	57727197	SINE	RSINE1	B4	chr9RSINE157716121	ProperStrand	1	1	-inf
chr9	123078166	123078266	LTR	RMER6A	ERVK	chr9RMER6A123078164	ProperStrand	1	chr9	123078280	123080399	protein_coding	Cdcp1	utr3	ENSMUSG00000035498	ProperStrand	55	1	-inf
chr17	39846701	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	59451317	59454975	protein_coding	Anapc16	intron	ENSMUSG00000020107	ProperStrand	2	1	-5.3533
chr17	39848598	39848703	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	51470191	51471499	protein_coding	Mgst2	intron	ENSMUSG00000074604	ProperStrand	9	1	-5.1969
chr12	38861381	38865556	protein_coding	Dgkb	intron	ENSMUSG00000036095	NonProperStrand	29	chr12	3456402	3456500	protein_coding	Asxl2	intron	ENSMUSG00000037486	ProperStrand	73	1	-13.0996
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr17	35163960	35164077	protein_coding	Ng23	intron	ENSMUSG00000036185	ProperStrand	4	1	-19.0994
chr13	21172464	21172564	LINE	Lx6	L1	chr13Lx621172472	NonProperStrand	1	chr13	21172938	21173028	LINE	Lx6	L1	chr13Lx621172801	NonProperStrand	5	1	-inf
chr7	120728903	120728977	LINE	Lx5	L1	chr7Lx5120728250	NonProperStrand	7	chr12	3501586	3501650	protein_coding	Asxl2	utr3	ENSMUSG00000037486	ProperStrand	73	1	-16.0733
chr10	74339319	74339419	LTR	IAPEz-int	ERVK	chr10IAPEz-int74339059	NonProperStrand	1	chr10	74339629	74339719	LTR	IAPEz-int	ERVK	chr10IAPEz-int74339625	NonProperStrand	1	1	-inf
chr12	28438270	28438371	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr19	61175152	61175249	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	16	3	-inf
chr11	100484691	100493570	protein_coding	Zfp385c	intron	ENSMUSG00000014198	ProperStrand	87	chr11	100481715	100486914	protein_coding	Nkiras2	intron	ENSMUSG00000017837	NonProperStrand	16	5	-inf
chr17	39843692	39843806	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr5	22903834	22903853	SINE	B2_Mm2	B2	chr5B2_Mm222903723	ProperStrand	1	1	-inf
chrX	144893624	144893724	LTR	MT2B	ERVL	chrXMT2B144893650	NonProperStrand	1	chrX	144893846	144893936	Simple_repeat	(GA)n	Simple_repeat	chrX(GA)n144893809	NonProperStrand	1	1	-inf
chr11	117260624	117260714	LINE	Lx8	L1	chr11Lx8117260463	ProperStrand	2	chr11	117260742	117260842	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n117260765	ProperStrand	2	2	-inf
chr8	114979224	114979297	LINE	L1_Mm	L1	chr8L1_Mm114978330	NonProperStrand	4	chr8	114974478	114974541	LTR	RLTR26	ERVK	chr8RLTR26114974227	NonProperStrand	3	1	-inf
chr5	146261154	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	155493960	155494073	protein_coding	9430015G10Rik	intron	ENSMUSG00000059939	ProperStrand	31	1	-6.3617
chr17	39847054	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	5298949	5590533	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	118	-3.7852
chr17	39846532	39846554	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	74055432	74055499	SINE	B2_Mm2	B2	chr18B2_Mm274055370	ProperStrand	1	1	-inf
chr16	38534184	38534274	protein_coding-noncoding	Poglut1	utr3	ENSMUSG00000034064	ProperStrand	7	chr16	38534071	38534171	protein_coding	Poglut1	intron	ENSMUSG00000034064	ProperStrand	24	2	-inf
chr11	6274112	6274212	LTR	ORR1A2	MaLR	chr11ORR1A26273995	NonProperStrand	2	chr11	6274216	6274470	SINE	B2_Mm2	B2	chr11B2_Mm26274258	NonProperStrand	2	2	-inf
chr6	95269001	95269057	antisense	AY512915	.	ENSMUSG00000068180	ProperStrand	4	chr13	73915460	73915559	protein_coding	Slc12a7	intron	ENSMUSG00000017756	NonProperStrand	25	2	-inf
chr15	25266448	25266538	DNA	MER5A	MER1_type	chr15MER5A25266458	NonProperStrand	1	chr15	25266588	25266688	LINE	L1_Mus3	L1	chr15L1_Mus325266598	NonProperStrand	1	1	-inf
chr18	56708440	56729288	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	96	chr18	56708257	56728416	protein_coding	Aldh7a1	intron	ENSMUSG00000053644	NonProperStrand	85	7	-22.2454
chr8	71805119	71805219	LINE	Lx2	L1	chr8Lx271804737	NonProperStrand	1	chr8	71862658	71862748	LINE	Lx3B	L1	chr8Lx3B71858469	ProperStrand	1	1	-inf
chr16	33157588	33157688	LTR	ORR1A2	MaLR	chr16ORR1A233157423	NonProperStrand	1	chr16	33157931	33158021	SINE	B3	B2	chr16B333157799	ProperStrand	1	1	-inf
chr17	39847810	39847885	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	7727898	7727977	LTR	MLT1F1	MaLR	chrXMLT1F17727778	ProperStrand	2	2	-inf
chr3	8541558	8541599	protein_coding	Stmn2	intron	ENSMUSG00000027500	ProperStrand	66	chr9	59670622	59670687	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-6.1004
chr5	146261052	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr13	24225414	24225528	protein_coding	Lrrc16a	intron	ENSMUSG00000021338	ProperStrand	112	1	-3.8737
chr11	120813893	120813917	protein_coding	Slc16a3	intron	ENSMUSG00000025161	NonProperStrand	149	chr4	45487392	45487503	protein_coding	Shb	intron	ENSMUSG00000044813	ProperStrand	384	1	-6.5011
chr13	53409384	53409474	LINE	L1MC4a	L1	chr13L1MC4a53409166	NonProperStrand	1	chr13	53409848	53409948	LTR	ORR1B1	MaLR	chr13ORR1B153409768	NonProperStrand	1	1	-inf
chr2	171661183	171661273	LTR	MTEa	MaLR	chr2MTEa171661131	NonProperStrand	1	chr15	91721416	91721516	protein_coding	Muc19	intron	ENSMUSG00000044021	ProperStrand	3	1	-inf
chr7	132268213	132268303	LINE	Lx9	L1	chr7Lx9132268195	NonProperStrand	1	chr10	52738261	52738361	protein_coding	Slc35f1	intron	ENSMUSG00000038602	ProperStrand	51	1	-inf
chr17	39847636	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	113546640	113548382	protein_coding	4931417G12Rik	intron	ENSMUSG00000033963	NonProperStrand	2	1	-5.4040
chr14	103658060	103658106	protein_coding	Mycbp2	intron	ENSMUSG00000033004	NonProperStrand	25	chr11	97678458	97678556	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	1	-12.3044
chr1	37431371	37431410	protein_coding	Inpp4a	intron	ENSMUSG00000026113	ProperStrand	55	chr16	44351002	44351076	protein_coding	Spice1	intron	ENSMUSG00000043065	ProperStrand	38	1	-13.1213
chr12	4882314	4882356	LTR	RLTR19B	ERVK	chr12RLTR19B4882099	NonProperStrand	8	chr10	42521754	42521833	protein_coding	Sec63	intron	ENSMUSG00000019802	ProperStrand	36	1	-17.2733
chr9	72608728	72608808	SINE	B2_Mm2	B2	chr9B2_Mm272608704	NonProperStrand	1	chr1	71649196	71649270	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	1	-inf
chr8	78485505	78485570	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	chr8	122490955	122491127	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.9375
chr17	39847325	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	145039443	145039560	SINE	ID_B1	B4	chr6ID_B1145039306	NonProperStrand	1	1	-inf
chrX	74030179	74030270	LINE	L1_Mus1	L1	chrXL1_Mus174029917	ProperStrand	1	chr5	146261285	146261336	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-inf
chr12	86494991	86495056	LINE	L1_Mus3	L1	chr12L1_Mus386494657	NonProperStrand	6	chr14	117235413	117235468	LINE	L1M5	L1	chr14L1M5117235381	NonProperStrand	1	1	-inf
chr15	103212328	103212428	SINE	PB1D9	Alu	chr15PB1D9103212318	ProperStrand	3	chr15	103212444	103212534	SINE	PB1D9	Alu	chr15PB1D9103212444	ProperStrand	3	3	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr7	96300192	96300293	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-7.4852
chr4	91324769	91324882	LINE	L1Md_T	L1	chr4L1Md_T91321308	NonProperStrand	6	chr3	34791269	34791314	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n34791185	ProperStrand	1	1	-inf
chr14	69695569	69695661	LINE	L1_Mus3	L1	chr14L1_Mus369695464	NonProperStrand	5	chr17	56243482	56243582	protein_coding	Plin4	exon	ENSMUSG00000002831	ProperStrand	2	2	-inf
chr4	27903393	27903493	SINE	B1_Mus1	Alu	chr4B1_Mus127903363	NonProperStrand	1	chr4	27903180	27903270	SINE	MIR	MIR	chr4MIR27903189	NonProperStrand	1	1	-inf
chr2	162931757	162932091	LINE	Lx4B	L1	chr2Lx4B162931680	NonProperStrand	12	chr2	162932087	162933470	SINE	RSINE1	B4	chr2RSINE1162932073	NonProperStrand	2	2	-inf
chr17	39844625	39844751	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr15	99498746	99498764	SINE	B2_Mm1a	B2	chr15B2_Mm1a99498607	NonProperStrand	8	1	-6.4668
chr11	8445680	8445726	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr2	41344451	41344467	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-7.2511
chr15	51973164	51973215	LINE	L1_Mus4	L1	chr15L1_Mus451972465	NonProperStrand	3	chr5	123743604	123743663	protein_coding	Wdr66	intron	ENSMUSG00000029442	NonProperStrand	48	1	-18.5873
chr13	112578205	112578305	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr11	74875300	74875390	protein_coding	Smg6	intron	ENSMUSG00000038290	NonProperStrand	52	1	-4.4790
chr12	17281063	17283252	protein_coding	Pdia6	intron	ENSMUSG00000020571	ProperStrand	22	chr19	46259588	46259673	protein_coding	Gbf1	intron	ENSMUSG00000025224	ProperStrand	72	1	-13.6923
chr9	69479638	69479738	LTR	MLT1A0	MaLR	chr9MLT1A069479651	ProperStrand	5	chr9	69479538	69479628	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n69479441	ProperStrand	4	4	-inf
chr15	8113849	8113950	LINE	L1_Mur2	L1	chr15L1_Mur28113780	ProperStrand	6	chr15	8113716	8113806	SINE	B2_Mm1a	B2	chr15B2_Mm1a8113620	NonProperStrand	3	3	-inf
chr1	161035849	161035912	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr2	150195830	150195876	LINE	L1Md_F3	L1	chr2L1Md_F3150195685	NonProperStrand	1	1	-inf
chr7	24978250	24978356	LTR	RLTR22_Mur	ERVK	chr7RLTR22_Mur24977931	NonProperStrand	1	chr1	131573995	131574034	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-inf
chr17	46384244	46386725	protein_coding-noncoding	Polr1c	utr3	ENSMUSG00000067148	NonProperStrand	1	chr17	46384155	46384245	protein_coding	Polr1c	intron	ENSMUSG00000067148	NonProperStrand	4	1	-inf
chr5	66588172	66588253	LTR	RMER6A	ERVK	chr5RMER6A66588177	ProperStrand	1	chr12	117759832	117759865	protein_coding	Ptprn2	intron	ENSMUSG00000056553	ProperStrand	87	1	-inf
chr17	66514588	66514676	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int66514323	NonProperStrand	5	chr17	66511127	66511171	LTR	RLTR15	ERVK	chr17RLTR1566511090	NonProperStrand	1	1	-inf
chr17	39847675	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	23550258	23550309	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int23549476	ProperStrand	5	1	-3.2379
chr10	50802587	50802677	LINE	Lx6	L1	chr10Lx650802591	ProperStrand	1	chr10	50802384	50802484	LTR	RLTR26	ERVK	chr10RLTR2650801969	NonProperStrand	1	1	-inf
chr2	121767612	121767659	LTR	MTC	MaLR	chr2MTC121767606	ProperStrand	1	chr2	121767657	121767760	SINE	B1_Mus2	Alu	chr2B1_Mus2121767649	NonProperStrand	1	1	-inf
chr12	102600238	102600260	LINE	Lx2	L1	chr12Lx2102600228	ProperStrand	14	chr12	102604430	102604560	SINE	B3	B2	chr12B3102604393	ProperStrand	6	2	-inf
chr12	109545190	109545229	protein_coding	Hhipl1	intron	ENSMUSG00000021260	ProperStrand	179	chr4	21814147	21814240	protein_coding	Coq3	intron	ENSMUSG00000028247	ProperStrand	16	1	-12.5161
chr9	60435561	60435658	protein_coding	Lrrc49	exon	ENSMUSG00000047766	ProperStrand	10	chr5	100045283	100045333	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	NonProperStrand	55	1	-15.8433
chr16	16312696	16312728	protein_coding	Dnm1l	utr3	ENSMUSG00000022789	ProperStrand	30	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.3498
chr4	116322286	116322386	protein_coding	Akr1a1	intron	ENSMUSG00000028692	NonProperStrand	1	chr4	116434563	116434653	protein_coding	Tesk2	intron	ENSMUSG00000033985	ProperStrand	4	1	-inf
chr17	39846484	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	53500776	53500945	protein_coding	Rab39	intron	ENSMUSG00000055069	ProperStrand	5	1	-3.1907
chr8	33376251	33376293	SINE	PB1D10	Alu	chr8PB1D1033376190	ProperStrand	1	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	39847063	39847518	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	78350880	78351120	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	84	-13.6540
chr9	19658036	19658136	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	chr2	20622023	20622114	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-10.3340
chr17	47239920	47239980	SINE	ID_B1	B4	chr17ID_B147239784	NonProperStrand	1	chr1	16102750	16102815	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	1	-inf
chr9	110281293	110281310	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr1	181255998	181256039	protein_coding	Smyd3	intron	ENSMUSG00000055067	NonProperStrand	144	1	-5.8327
chr2	27470023	27470113	LINE	L1M4c	L1	chr2L1M4c27470003	NonProperStrand	4	chr2	27469920	27470020	SINE	B1_Mus1	Alu	chr2B1_Mus127469859	NonProperStrand	4	2	-inf
chr5	77268532	77268577	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	chr11	113901597	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-8.2125
chr2	122059798	122060221	LINE	L2b	L2	chr2L2b122060169	ProperStrand	1	chr6	3201460	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr12	67667908	67667998	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr13	78017074	78017174	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-11.1921
chr4	32881559	32881601	LTR	RLTR4_MM-int	ERV1	chr4RLTR4_MM-int32878253	ProperStrand	6	chr7	126795328	126795371	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-13.5352
chr7	29353086	29353150	protein_coding	Pak4	exon	ENSMUSG00000030602	ProperStrand	17	chr19	11783060	11783097	protein_coding	Gm97	intron	ENSMUSG00000055933	NonProperStrand	8	1	-18.6132
chr10	127692984	127693506	SINE	B1F1	Alu	chr10B1F1127693001	NonProperStrand	1	chr10	127689420	127690926	SINE	ID_B1	B4	chr10ID_B1127690866	ProperStrand	1	1	-inf
chr6	148294672	148306003	protein_coding	Tmtc1	intron	ENSMUSG00000030306	NonProperStrand	51	chr6	51922317	51922333	protein_coding	Skap2	intron	ENSMUSG00000059182	NonProperStrand	7	1	-16.8059
chr2	127458313	127458359	LINE	Lx8	L1	chr2Lx8127458261	NonProperStrand	1	chr17	45567855	45567925	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-inf
chr8	104603062	104603152	LINE	Lx7	L1	chr8Lx7104602839	NonProperStrand	2	chr8	104603187	104603287	LINE	Lx7	L1	chr8Lx7104603182	NonProperStrand	2	2	-inf
chr8	74129122	74129222	protein_coding-noncoding	Fam129c	utr5	ENSMUSG00000043243	ProperStrand	1	chr8	74128849	74128939	protein_coding	Fam129c	exon	ENSMUSG00000043243	ProperStrand	1	1	-inf
chr5	149045099	149045199	protein_coding-noncoding	Mtus2	utr5	ENSMUSG00000029651	NonProperStrand	6	chr5	149045229	149045317	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	6	-inf
chr15	58782989	58783005	protein_coding	Mtss1	intron	ENSMUSG00000022353	ProperStrand	18	chr16	17181311	17181422	protein_coding	Ube2l3	intron	ENSMUSG00000038965	ProperStrand	43	1	-15.1509
chr1	156620844	156620895	LTR	MTB	MaLR	chr1MTB156620533	NonProperStrand	2	chr7	127257039	127257087	protein_coding	Tmem159	intron	ENSMUSG00000030917	NonProperStrand	16	1	-inf
chr6	124747698	124747788	LTR	MMETn-int	ERVK	chr6MMETn-int124747368	ProperStrand	10	chr1	134307679	134307779	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n134307695	NonProperStrand	5	4	-inf
chr6	49258471	49258590	LTR	MT2A	ERVL	chr6MT2A49258357	NonProperStrand	3	chr6	49260888	49260919	SINE	ID_B1	B4	chr6ID_B149260755	NonProperStrand	3	1	-20.2168
chr3	153614498	153614598	LTR	RMER19C	ERVK	chr3RMER19C153614154	ProperStrand	4	chr3	153638065	153638087	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	1	-14.5414
chr12	86507766	86507809	protein_coding	Pgf	utr3	ENSMUSG00000004791	NonProperStrand	195	chr16	10651297	10651318	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	1	-7.1508
chr2	173027461	173027551	LINE	Lx6	L1	chr2Lx6173027446	ProperStrand	1	chr2	173027564	173027664	LTR	MTB_Mm	MaLR	chr2MTB_Mm173027575	ProperStrand	1	1	-inf
chr17	28400415	28400442	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-5.4901
chr17	39847959	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	143291353	143291468	SINE	PB1D7	Alu	chr7PB1D7143291350	NonProperStrand	1	1	-inf
chr1	84149317	84149425	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	chr2	21388883	21388926	protein_coding	Gpr158	intron	ENSMUSG00000045967	NonProperStrand	11	1	-13.7063
chr7	55915716	55915840	LINE	L1_Mur2	L1	chr7L1_Mur255913779	NonProperStrand	2	chr17	39847958	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr9	123461931	123461977	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	69558873	69559603	protein_coding	Kctd8	intron	ENSMUSG00000037653	NonProperStrand	8	1	-4.8360
chr11	6405851	6405951	LTR	RLTR19A	ERVK	chr11RLTR19A6405844	ProperStrand	4	chr11	6405765	6405855	SINE	B4A	B4	chr11B4A6405689	NonProperStrand	1	1	-inf
chr11	3724816	3724935	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chr5	24706505	24706522	protein_coding	Galntl5	intron	ENSMUSG00000028938	ProperStrand	26	4	-inf
chr17	39846471	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	31400004	31400639	SINE	ID_B1	B4	chr9ID_B131400562	NonProperStrand	1	1	-inf
chr2	144459021	144459122	protein_coding	Dtd1	intron	ENSMUSG00000027430	NonProperStrand	7	chr8	72517382	72517442	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	1	-14.5239
chr9	92521166	92521187	LTR	IAPEz-int	ERVK	chr9IAPEz-int92520069	NonProperStrand	1	chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	1	-inf
chr2	35728770	35728787	protein_coding	Ttll11	intron	ENSMUSG00000026885	ProperStrand	10	chr5	66442307	66442407	protein_coding	Rbm47	intron	ENSMUSG00000070780	ProperStrand	141	1	-13.9731
chr12	85075118	85075145	protein_coding	Psen1	utr3	ENSMUSG00000019969	ProperStrand	26	chr16	19883804	19883821	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-10.5903
chrX	45122354	45122444	LINE	L1_Mm	L1	chrXL1_Mm45122293	ProperStrand	1	chr1	61889636	61889736	protein_coding	Pard3b	intron	ENSMUSG00000052062	ProperStrand	43	1	-inf
chr2	127801422	127803064	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	chr18	34931940	34932005	protein_coding	Fam53c	utr3	ENSMUSG00000034300	NonProperStrand	18	1	-15.0916
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr6	30166378	30166476	protein_coding	Ube2h	intron	ENSMUSG00000039159	ProperStrand	50	1	-8.2135
chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	80621572	80621642	Simple_repeat	(TA)n	Simple_repeat	chr17(TA)n80621549	NonProperStrand	1	1	-inf
chr7	135694801	135694897	DNA	Tigger5	MER2_type	chr7Tigger5135694669	NonProperStrand	4	chr14	20587889	20587937	protein_coding	Nid2	exon	ENSMUSG00000021806	NonProperStrand	20	1	-20.7310
chr2	32568347	32568447	protein_coding-noncoding	Cdk9	utr5	ENSMUSG00000009555	NonProperStrand	4	chr2	32568257	32568347	protein_coding	Cdk9	utr5	ENSMUSG00000009555	NonProperStrand	6	3	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr12	86497006	86497139	LINE	L2a	L2	chr12L2a86496967	ProperStrand	1	1	-inf
chrX	93040104	93040126	protein_coding	Zc3h12b	intron	ENSMUSG00000035045	ProperStrand	5	chrX	106021767	106021839	protein_coding	Brwd3	intron	ENSMUSG00000063663	NonProperStrand	26	1	-19.1584
chr13	54679891	54679936	protein_coding-noncoding	Arl10	utr5	ENSMUSG00000025870	NonProperStrand	2	chr2	167063224	167063259	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-18.6285
chr11	109011668	109011714	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	80472498	80472545	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	1	-5.1606
chr4	140702280	140702349	SINE	B1_Mus2	Alu	chr4B1_Mus2140702249	NonProperStrand	2	chr9	123462099	123462143	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr1	143543240	143543330	LINE	Lx4B	L1	chr1Lx4B143542714	ProperStrand	1	chr1	143543539	143543639	LTR	MTA_Mm	MaLR	chr1MTA_Mm143543392	NonProperStrand	1	1	-inf
chr11	121540888	121541067	LTR	MTD	MaLR	chr11MTD121540846	NonProperStrand	6	chr11	121503693	121540882	protein_coding	B3gntl1	intron	ENSMUSG00000046605	NonProperStrand	48	5	-inf
chr11	8490896	8490987	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr7	30106113	30106130	protein_coding	Sipa1l3	utr3	ENSMUSG00000030583	ProperStrand	147	1	-6.1690
chr13	97491749	97491793	LINE	L1_Rod	L1	chr13L1_Rod97491394	NonProperStrand	4	chr13	97492662	97492773	LINE	L1_Rod	L1	chr13L1_Rod97492375	NonProperStrand	23	1	-20.9611
chr11	55012809	55012888	SINE	B1_Mur3	Alu	chr11B1_Mur355012797	NonProperStrand	2	chr9	123461905	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	129819019	129819119	LINE	L1M2	L1	chr2L1M2129818956	NonProperStrand	2	chr2	129818907	129818997	LINE	Lx8	L1	chr2Lx8129818849	NonProperStrand	2	2	-inf
chr12	69184707	69184795	LINE	L1Md_F2	L1	chr12L1Md_F269184677	ProperStrand	5	chr17	39846428	39846474	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr6	122729889	122729970	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr8	94029793	94029864	protein_coding	Fto	intron	ENSMUSG00000055932	NonProperStrand	56	1	-9.1480
chr6	122739160	122739233	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr9	40803993	40804026	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-4.4990
chr10	86836384	86836416	Simple_repeat	(TCC)n	Simple_repeat	chr10(TCC)n86836374	ProperStrand	1	chr2	29968811	29968895	protein_coding	Zer1	exon	ENSMUSG00000039686	NonProperStrand	19	1	-inf
chr2	115143044	115143134	LTR	RMER19B	ERVK	chr2RMER19B115142944	NonProperStrand	1	chr14	33967469	33967569	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr2	59411324	59411414	LTR	RLTR19-int	ERVK	chr2RLTR19-int59411294	ProperStrand	2	chr2	59411448	59411548	LTR	RLTR19-int	ERVK	chr2RLTR19-int59411430	ProperStrand	2	2	-inf
chr3	110663130	110663230	LTR	RLTR12B	ERVK	chr3RLTR12B110663108	ProperStrand	1	chr3	110662883	110662973	LTR	RLTR16	ERVK	chr3RLTR16110662570	NonProperStrand	1	1	-inf
chr14	66278981	66279081	SINE	B1_Mus2	Alu	chr14B1_Mus266278908	ProperStrand	1	chr14	66279112	66279202	SINE	RSINE1	B4	chr14RSINE166279096	ProperStrand	1	1	-inf
chr16	8490340	8491009	LTR	RLTR14	ERV1	chr16RLTR148490741	NonProperStrand	8	chr16	8491034	8491134	LTR	RLTR14	ERV1	chr16RLTR148490910	NonProperStrand	8	8	-inf
chr19	32151661	32151705	LINE	L1_Mur3	L1	chr19L1_Mur332150803	NonProperStrand	2	chr17	39846587	39846641	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr6	122728389	122728479	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr10	63294173	63294192	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-7.9099
chr10	78217257	78220274	LTR	MTC	MaLR	chr10MTC78219931	ProperStrand	2	chr10	78210392	78217178	protein_coding	Ccdc105	intron	ENSMUSG00000078442	ProperStrand	6	2	-inf
chr1	106281519	106281547	LINE	L1Md_A	L1	chr1L1Md_A106279530	NonProperStrand	5	chr1	106287015	106287052	Other	RMER1C	Other	chr1RMER1C106286151	ProperStrand	2	1	-23.2669
chr3	106007184	106007274	protein_coding	Chi3l3	intron	ENSMUSG00000040809	ProperStrand	17	chr3	106006982	106007082	protein_coding	Chi3l4	exon	ENSMUSG00000063779	ProperStrand	1	1	-inf
chr15	82459977	82460067	LINE	L1Md_F2	L1	chr15L1Md_F282459266	NonProperStrand	1	chr15	82464655	82464755	LINE	L1_Mus2	L1	chr15L1_Mus282460235	NonProperStrand	1	1	-inf
chr8	114531877	114531906	protein_coding	Kars	intron	ENSMUSG00000031948	NonProperStrand	70	chr8	114541181	114541303	protein_coding	Terf2ip	intron	ENSMUSG00000033430	ProperStrand	50	1	-12.0800
chr14	19779595	19779682	LINE	L1VL4	L1	chr14L1VL419779609	ProperStrand	2	chr11	6419536	6419608	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	1	-18.7983
chr11	102314242	102314345	SINE	B1_Mur1	Alu	chr11B1_Mur1102314209	NonProperStrand	1	chr11	102319645	102319698	protein_coding	Itga2b	intron	ENSMUSG00000034664	ProperStrand	11	1	-inf
chr16	23111315	23111412	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr5	132458465	132458504	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-5.1389
chr12	83606137	83606227	LINE	L1Md_T	L1	chr12L1Md_T83605868	NonProperStrand	1	chr2	72965692	72965792	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	1	-inf
chr11	116757705	116757744	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr4	59867932	59867997	protein_coding	Snx30	intron	ENSMUSG00000028385	ProperStrand	123	1	-11.2061
chr2	35698325	35698395	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	chr13	113982854	113982932	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-4.2284
chr16	80223944	80224034	LINE	L1_Mus2	L1	chr16L1_Mus280223534	ProperStrand	1	chr16	80224129	80224229	LTR	RLTR26	ERVK	chr16RLTR2680224088	ProperStrand	1	1	-inf
chr17	39848128	39848167	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	118884838	118884863	SINE	B4A	B4	chr1B4A118884596	ProperStrand	1	1	-inf
chr17	39846952	39846985	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	8761663	8761792	LTR	ORR1D1	MaLR	chr19ORR1D18761645	ProperStrand	1	1	-inf
chr13	23571796	23571861	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	chr2	122123773	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.5466
chr9	106481313	106481783	LTR	MTD-int	MaLR	chr9MTD-int106480826	NonProperStrand	1	chr17	28590242	28590287	protein_coding	Fkbp5	intron	ENSMUSG00000024222	ProperStrand	81	1	-inf
chr9	37405936	37405999	LTR	MTE2a	MaLR	chr9MTE2a37405921	NonProperStrand	1	chr9	37411362	37411391	protein_coding	Spa17	intron	ENSMUSG00000001948	NonProperStrand	4	1	-inf
chr17	39847858	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	88480404	88480434	LTR	MTD	MaLR	chr17MTD88480352	NonProperStrand	1	1	-inf
chr19	47249210	47249300	SINE	B2_Mm2	B2	chr19B2_Mm247249104	NonProperStrand	4	chr19	47249336	47249436	SINE	B4A	B4	chr19B4A47249349	NonProperStrand	6	4	-inf
chr17	39843186	39848461	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	39847330	39848491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	7307	-inf
chr14	103080533	103080624	LINE	L1_Mur2	L1	chr14L1_Mur2103080274	NonProperStrand	2	chr17	24720676	24720724	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-16.4464
chr10	61452453	61452564	LINE	Lx5	L1	chr10Lx561452463	NonProperStrand	3	chr10	61435054	61435092	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	2	-20.2141
chr10	75695988	75696028	protein_coding	Prmt2	intron	ENSMUSG00000020230	ProperStrand	130	chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.6543
chrX	4899368	4899400	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr13	97190568	97190590	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.5176
chr5	90551491	90551591	LTR	RMER20B	ERVK	chr5RMER20B90551495	ProperStrand	1	chr5	90568174	90568264	SINE	B1_Mus1	Alu	chr5B1_Mus190568135	ProperStrand	1	1	-inf
chr19	21678504	21678607	protein_coding	1110059E24Rik	intron	ENSMUSG00000035171	NonProperStrand	12	chr4	10992272	10992302	protein_coding	2310030N02Rik	intron	ENSMUSG00000050323	ProperStrand	19	1	-17.5929
chr7	30525311	30525411	LTR	RLTR6-int	ERV1	chr7RLTR6-int30524190	NonProperStrand	1	chr7	30525686	30525776	LTR	RLTR6-int	ERV1	chr7RLTR6-int30525645	NonProperStrand	7	1	-inf
chr15	80078415	80078763	protein_coding	Smcr7l	exon	ENSMUSG00000022412	NonProperStrand	429	chr3	86163808	86163827	protein_coding	Lrba	exon	ENSMUSG00000028080	NonProperStrand	94	1	-7.1935
chr4	143128033	143128082	protein_coding	Gm13040	intron	ENSMUSG00000070616	NonProperStrand	46	chr4	143133341	143133436	protein_coding	Gm13057	intron	ENSMUSG00000078514	NonProperStrand	8	1	-16.7211
chr11	116559762	116559813	SINE	B1_Mur4	Alu	chr11B1_Mur4116559730	ProperStrand	1	chr16	33047640	33047692	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	1	-inf
chr17	39847495	39847915	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	141316740	141325286	protein_coding	Dnajc16	utr3	ENSMUSG00000040697	NonProperStrand	24	4	-3.9273
chr10	99196077	99196166	LINE	L1Md_T	L1	chr10L1Md_T99195994	NonProperStrand	7	chr11	53282155	53282224	SINE	B2_Mm2	B2	chr11B2_Mm253282139	ProperStrand	2	2	-inf
chr2	125760184	125760226	protein_coding	Galk2	intron	ENSMUSG00000027207	NonProperStrand	12	chr9	65201725	65201776	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-14.3432
chr5	146261174	146261218	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	8545728	8554796	protein_coding	Stmn2	exon	ENSMUSG00000027500	ProperStrand	66	1	-4.8783
chr2	102829375	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr12	83525316	83525402	protein_coding	Sipa1l1	intron	ENSMUSG00000042700	ProperStrand	61	1	-9.8419
chr3	157548166	157548266	LINE	Lx8	L1	chr3Lx8157548163	NonProperStrand	3	chr3	157548038	157548128	SINE	B1_Mm	Alu	chr3B1_Mm157548020	NonProperStrand	2	2	-inf
chr5	53659808	53659833	protein_coding	1810013D10Rik	intron	ENSMUSG00000061461	ProperStrand	14	chr10	127267280	127267315	pseudogene	Rdh18-ps	.	ENSMUSG00000054031	ProperStrand	41	1	-15.7671
chr11	69668851	69668951	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr6	128030083	128030173	protein_coding	Tspan9	intron	ENSMUSG00000030352	ProperStrand	182	1	-6.8075
chr10	80425234	80425355	protein_coding	Gng7	intron	ENSMUSG00000048240	ProperStrand	79	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.0777
chr2	91025415	91025515	protein_coding	Nr1h3	intron	ENSMUSG00000002108	NonProperStrand	2	chr2	91017494	91017584	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	1	-18.5168
chrX	80802743	80802761	protein_coding	Dmd	intron	ENSMUSG00000045103	ProperStrand	47	chr5	25312857	25312983	protein_coding	Actr3b	intron	ENSMUSG00000056367	NonProperStrand	66	1	-12.3229
chr11	116672521	116679833	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	93	chr9	123461905	123462120	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	7	-8.3634
chr15	98839789	98839894	SINE	B2_Mm2	B2	chr15B2_Mm298839708	ProperStrand	3	chr13	97190567	97190605	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr5	146261136	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	146261238	146261279	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-4.4388
chr4	132352913	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	276	chr12	76661183	76661260	protein_coding	Ppp2r5e	intron	ENSMUSG00000021051	ProperStrand	27	1	-10.5777
chr3	90034157	90034689	SINE	B1_Mur1	Alu	chr3B1_Mur190034608	ProperStrand	1	chr3	90034688	90038440	protein_coding	Jtb	intron	ENSMUSG00000027937	NonProperStrand	3	1	-inf
chr5	115609465	115609565	SINE	B1_Mus1	Alu	chr5B1_Mus1115609432	ProperStrand	8	chr5	115606669	115609294	SINE	PB1D7	Alu	chr5PB1D7115609214	ProperStrand	6	4	-inf
chr17	56614029	56614130	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	chr6	33356182	33356316	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-4.8465
chr5	146261174	146261234	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	33507884	33507955	LTR	ORR1B1	MaLR	chr5ORR1B133507778	ProperStrand	5	1	-10.1672
chr12	79075525	79076484	DNA	URR1A	MER1_type	chr12URR1A79076268	NonProperStrand	1	chr4	63424119	63424177	Low_complexity	AT_rich	Low_complexity	chr4AT_rich63424124	NonProperStrand	1	1	-inf
chr2	165740561	165740651	SINE	B1_Mur4	Alu	chr2B1_Mur4165740547	ProperStrand	2	chr2	165740742	165740841	SINE	PB1D10	Alu	chr2PB1D10165740746	ProperStrand	2	2	-inf
chr2	154459916	154459964	protein_coding	Zfp341	exon	ENSMUSG00000059842	ProperStrand	110	chr19	43440544	43440561	protein_coding	Hpse2	intron	ENSMUSG00000074852	ProperStrand	13	1	-13.9231
chr2	144262021	144270398	LINE	Lx8	L1	chr2Lx8144269682	NonProperStrand	10	chr2	144270397	144270745	LINE	Lx8	L1	chr2Lx8144270119	NonProperStrand	13	1	-19.0697
chr12	17775092	17775182	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	chr12	24057394	24057494	pseudogene	Gm4437	.	ENSMUSG00000092445	ProperStrand	17	1	-11.1544
chr7	72696615	72696715	LINE	Lx7	L1	chr7Lx772696508	ProperStrand	1	chr7	72696313	72696403	LTR	RLTR20B3	ERVK	chr7RLTR20B372695981	ProperStrand	1	1	-inf
chr12	86962799	86962899	protein_coding	Jdp2	intron	ENSMUSG00000034271	ProperStrand	46	chr4	5689300	5689390	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	2	-16.8688
chr17	39846376	39846459	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	57789288	57789314	LTR	MTC	MaLR	chr3MTC57789275	ProperStrand	1	1	-inf
chr16	22386811	22392675	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chrX	50561757	50561802	protein_coding	Plac1	intron	ENSMUSG00000061082	ProperStrand	82	1	-8.4591
chr7	47188354	47188444	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	chr1	102246091	102246191	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	NonProperStrand	22	1	-14.4680
chr13	44791427	44791517	SINE	B1_Mm	Alu	chr13B1_Mm44791354	ProperStrand	2	chr13	44796745	44796845	SINE	B1_Mur2	Alu	chr13B1_Mur244796759	NonProperStrand	2	2	-inf
chr17	39848210	39848234	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	85733471	85733497	SINE	B1_Mus1	Alu	chr11B1_Mus185733317	NonProperStrand	1	1	-inf
chr2	5379273	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr12	58761969	58761985	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	7	1	-8.8922
chr14	86671083	86671173	LINE	Lx7	L1	chr14Lx786671076	ProperStrand	1	chr14	86670970	86671070	LINE	Lx8	L1	chr14Lx886670974	NonProperStrand	1	1	-inf
chr2	93999998	94000088	LTR	ORR1C2	MaLR	chr2ORR1C294000000	NonProperStrand	1	chr2	93999904	94000004	LTR	ORR1D1	MaLR	chr2ORR1D193999756	NonProperStrand	1	1	-inf
chr3	86141740	86142540	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	chr11	5874334	5874393	protein_coding	Camk2b	intron	ENSMUSG00000057897	ProperStrand	19	1	-13.4532
chr14	122228865	122228935	LINE	L1MC	L1	chr14L1MC122228514	ProperStrand	1	chr17	39847537	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	128839100	128839151	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-11.3422
chr17	39846090	39846122	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	93717872	93717981	SINE	B1_Mur1	Alu	chr2B1_Mur193717865	NonProperStrand	2	2	-inf
chr11	47223651	47223672	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	49	chr2	31594586	31594673	protein_coding	Abl1	intron	ENSMUSG00000026842	ProperStrand	150	1	-10.5913
chr9	123461812	123461867	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	96463944	96463970	protein_coding	Itga10	intron	ENSMUSG00000090210	NonProperStrand	3	1	-7.0114
chr17	45568506	45568920	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr14	20766069	20766099	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	1	-7.0550
chr11	90268132	90268153	LTR	RMER15	ERVL	chr11RMER1590268066	ProperStrand	1	chr17	39846389	39846425	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	28689020	28689084	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	chr17	45569825	45570286	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-7.3354
chr8	114761483	114761573	LINE	L1MA4	L1	chr8L1MA4114761436	NonProperStrand	5	chr8	114761569	114761669	Simple_repeat	(TCTA)n	Simple_repeat	chr8(TCTA)n114761583	ProperStrand	4	4	-inf
chrX	7984887	7984941	LINE	Lx3_Mus	L1	chrXLx3_Mus7984669	ProperStrand	1	chr10	42476935	42476979	antisense	Gm15199	.	ENSMUSG00000086428	ProperStrand	22	1	-inf
chr4	137885624	137885668	LTR	BGLII_A	ERVK	chr4BGLII_A137885286	ProperStrand	1	chr4	137884051	137884134	LTR	RMER19B	ERVK	chr4RMER19B137883773	NonProperStrand	1	1	-inf
chr1	192980322	192980402	LTR	MURVY-int	ERV1	chr1MURVY-int192980027	NonProperStrand	1	chr1	192984441	192984480	LTR	RLTR6-int	ERV1	chr1RLTR6-int192982587	NonProperStrand	1	1	-inf
chr3	41589076	41589168	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int41587093	ProperStrand	34	chr9	120494574	120494919	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n120494527	ProperStrand	1	1	-inf
chr19	45763958	45764058	LINE	L1_Mus1	L1	chr19L1_Mus145763536	NonProperStrand	3	chr19	45764180	45764270	SINE	B1_Mus1	Alu	chr19B1_Mus145764125	NonProperStrand	1	1	-inf
chr1	122357179	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr12	110695192	110695271	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-6.1082
chr15	96371351	96371449	LINE	L1VL2	L1	chr15L1VL296370519	NonProperStrand	3	chr6	124935989	124936012	SINE	B1_Mm	Alu	chr6B1_Mm124935916	ProperStrand	1	1	-inf
chr9	123462018	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	87089923	87090022	protein_coding	Antxr1	intron	ENSMUSG00000033420	NonProperStrand	10	1	-4.3847
chr1	159342850	159344919	protein_coding	2810025M15Rik	intron	ENSMUSG00000049881	ProperStrand	3	chr1	159328714	159342849	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	57	1	-18.4369
chr7	66142568	66142658	LINE	L1Md_A	L1	chr7L1Md_A66138115	ProperStrand	10	chr7	66135759	66135859	LINE	Lx9	L1	chr7Lx966135759	ProperStrand	2	1	-20.0413
chr6	3201461	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	148994891	148994962	pseudogene	Gm10167	.	ENSMUSG00000066554	ProperStrand	1	1	-inf
chr1	74239686	74239778	protein_coding	Cxcr1	intron	ENSMUSG00000048480	NonProperStrand	8	chr1	181203274	181203296	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-14.1842
chr12	44904442	44904461	LINE	L1_Mus3	L1	chr12L1_Mus344902669	NonProperStrand	1	chr12	13230012	13230145	protein_coding	Ddx1	intron	ENSMUSG00000037149	ProperStrand	27	1	-inf
chr3	43499478	43499568	LINE	L1_Mm	L1	chr3L1_Mm43497781	ProperStrand	1	chr3	43500003	43500103	LINE	L1_Mus3	L1	chr3L1_Mus343500000	ProperStrand	1	1	-inf
chr3	67529374	67529464	LINE	L1Md_F	L1	chr3L1Md_F67525995	NonProperStrand	1	chr3	67529661	67529761	LINE	L1_Mur3	L1	chr3L1_Mur367529518	NonProperStrand	1	1	-inf
chr1	60485101	60485176	protein_coding	Abi2	intron	ENSMUSG00000026782	NonProperStrand	40	chr9	15314075	15314129	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-11.2724
chr6	70013006	70013106	LINE	L1VL2	L1	chr6L1VL270013001	NonProperStrand	1	chr6	70012884	70012974	LINE	L1_Mus3	L1	chr6L1_Mus370011017	NonProperStrand	1	1	-inf
chr17	64060744	64060818	LINE	Lx5	L1	chr17Lx564060084	NonProperStrand	1	chr5	33504864	33504909	protein_coding	Slc5a1	utr3	ENSMUSG00000011034	NonProperStrand	541	1	-inf
chr5	7386796	7386896	LINE	Lx5	L1	chr5Lx57384700	ProperStrand	1	chr5	7387127	7387217	LTR	ORR1A4	MaLR	chr5ORR1A47386868	ProperStrand	1	1	-inf
chr17	39847611	39847650	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	90198436	90198530	LTR	MTEb	MaLR	chr7MTEb90198250	NonProperStrand	1	1	-inf
chr2	109949017	109949138	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	chr2	32087688	32087707	protein_coding	Prrc2b	utr3	ENSMUSG00000039262	NonProperStrand	14	1	-12.0913
chr17	39846352	39846429	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	129221295	129221362	SINE	B1_Mm	Alu	chr4B1_Mm129221243	NonProperStrand	2	1	-5.3533
chr11	104424464	104424543	processed_transcript	Gm11665	.	ENSMUSG00000086932	ProperStrand	17	chr7	6381597	6381621	protein_coding	AC188461.4	intron	ENSMUSG00000093536	ProperStrand	3	1	-20.3649
chr10	77498528	77498609	protein_coding	Aire	intron	ENSMUSG00000000731	ProperStrand	24	chr16	29610414	29610450	protein_coding	Opa1	intron	ENSMUSG00000038084	ProperStrand	37	1	-14.8688
chr3	41478661	41478732	protein_coding-noncoding	Sclt1	utr3	ENSMUSG00000059834	ProperStrand	16	chr12	21030134	21030171	protein_coding	Asap2	intron	ENSMUSG00000052632	ProperStrand	137	1	-13.0531
chr13	29968635	29968669	LTR	MLT2D	ERVL	chr13MLT2D29968541	ProperStrand	4	chr9	123461822	123461907	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr4	129222203	129222358	DNA	Charlie8	MER1_type	chr4Charlie8129222201	ProperStrand	2	chr17	39847341	39847738	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr15	53267335	53267404	LINE	L1_Mur3	L1	chr15L1_Mur353266973	ProperStrand	1	chr15	53268988	53269073	LINE	L1_Mur3	L1	chr15L1_Mur353268494	ProperStrand	13	1	-inf
chr9	80273919	80273945	protein_coding	Impg1	intron	ENSMUSG00000032343	NonProperStrand	24	chr13	44869604	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.2879
chr4	41150010	41150113	protein_coding	Ubap2	intron	ENSMUSG00000028433	NonProperStrand	31	chr4	41150138	41150167	snoRNA	ENSMUSG00000089265_SNORD121A	.	ENSMUSG00000089265	NonProperStrand	1	1	-inf
chr8	105298864	105298916	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	chr13	97190582	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.2861
chr9	110945979	110946035	LINE	Lx3C	L1	chr9Lx3C110945252	ProperStrand	16	chr2	71804429	71804513	LTR	MTC	MaLR	chr2MTC71804220	NonProperStrand	2	1	-inf
chr6	38458432	38458500	protein_coding	Ubn2	utr3	ENSMUSG00000038538	ProperStrand	33	chr9	56223765	56223835	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-9.7019
chr17	39847659	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	74311348	74311401	LTR	MLT1E	MaLR	chrXMLT1E74311316	NonProperStrand	1	1	-inf
chr1	153315778	153315878	LTR	MTD	MaLR	chr1MTD153315660	NonProperStrand	2	chr1	153315927	153316017	SINE	B1_Mur2	Alu	chr1B1_Mur2153315867	NonProperStrand	2	2	-inf
chr11	97539018	97539074	protein_coding	Mllt6	intron	ENSMUSG00000038437	NonProperStrand	19	chr14	27087489	27088033	protein_coding	Gm10391	intron	ENSMUSG00000072672	ProperStrand	3	1	-19.6111
chr2	32168443	32168485	protein_coding-noncoding	Dnm1	utr3	ENSMUSG00000026825	NonProperStrand	1	chr2	32167527	32167547	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	1	-inf
chr15	25667301	25667396	protein_coding	Myo10	intron	ENSMUSG00000022272	ProperStrand	120	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-9.8385
chr19	50239197	50239287	protein_coding	Sorcs1	intron	ENSMUSG00000043531	NonProperStrand	8	chr19	22585940	22586040	protein_coding	Trpm3	intron	ENSMUSG00000052387	NonProperStrand	79	1	-15.6271
chr7	100939945	100939961	Simple_repeat	(CAAAG)n	Simple_repeat	chr7(CAAAG)n100939905	NonProperStrand	1	chr2	3138051	3138141	protein_coding	Fam171a1	intron	ENSMUSG00000050530	ProperStrand	4	1	-inf
chr11	97162216	97162359	SINE	B1_Mus2	Alu	chr11B1_Mus297162170	NonProperStrand	12	chr11	97162322	97162419	SINE	B1_Mus2	Alu	chr11B1_Mus297162317	NonProperStrand	14	10	-20.1394
chr12	70950225	70950288	lincRNA	4931403G20Rik	intron	ENSMUSG00000090912	ProperStrand	3	chr14	10787861	10787908	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	48	1	-18.5873
chr4	125047589	125048357	LINE	L1M4	L1	chr4L1M4125047423	ProperStrand	1	chr16	34549629	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-inf
chr2	27469872	27469939	SINE	B1_Mus1	Alu	chr2B1_Mus127469859	NonProperStrand	4	chr11	69669722	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-14.6924
chr10	52168452	52168542	LINE	L1Md_F2	L1	chr10L1Md_F252164943	NonProperStrand	2	chr10	33051213	33051313	protein_coding	Trdn	intron	ENSMUSG00000019787	ProperStrand	10	1	-20.4467
chr5	33515738	33518010	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr5	33500955	33504145	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	4	-15.0102
chr4	126341554	126341644	LTR	RMER19C	ERVK	chr4RMER19C126341540	NonProperStrand	2	chr4	126341423	126341523	SINE	PB1D9	Alu	chr4PB1D9126341440	NonProperStrand	2	2	-inf
chr1	110699820	110699920	LINE	Lx4A	L1	chr1Lx4A110699726	NonProperStrand	1	chr1	110699336	110699426	LTR	RMER13A	ERVK	chr1RMER13A110699093	NonProperStrand	1	1	-inf
chr18	35554503	35554603	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr4	116636582	116637764	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	4	-20.0239
chr17	39847275	39847326	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	122292938	122293012	protein_coding	Fnbp1l	intron	ENSMUSG00000039735	ProperStrand	6	1	-3.9545
chrX	53254052	53254118	LINE	L1Md_T	L1	chrXL1Md_T53252027	ProperStrand	4	chr2	131919387	131919463	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-17.2343
chr13	82789806	82789906	LINE	Lx3A	L1	chr13Lx3A82789607	NonProperStrand	1	chr13	82789937	82790027	LINE	Lx3A	L1	chr13Lx3A82789956	NonProperStrand	1	1	-inf
chr17	67810495	67811449	DNA	Tigger7	MER2_type	chr17Tigger767810939	NonProperStrand	5	chr9	7774496	7774591	protein_coding	Tmem123	intron	ENSMUSG00000050912	ProperStrand	15	1	-20.1811
chrX	103709631	103709721	LINE	Lx3B	L1	chrXLx3B103709589	NonProperStrand	1	chrX	103709333	103709433	SINE	B3	B2	chrXB3103709321	NonProperStrand	1	1	-inf
chr17	39846818	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	98278311	98278363	protein_coding	Erbb2	intron	ENSMUSG00000062312	ProperStrand	4	1	-3.6552
chr12	72784431	72784531	LINE	L1_Rod	L1	chr12L1_Rod72784446	ProperStrand	3	chr12	72784332	72784422	SINE	B1_Mm	Alu	chr12B1_Mm72784298	ProperStrand	4	3	-inf
chr4	151970891	151973540	LTR	MTC	MaLR	chr4MTC151973257	ProperStrand	6	chr4	151969860	151969950	LTR	ORR1D1	MaLR	chr4ORR1D1151969836	ProperStrand	6	5	-inf
chr17	39848262	39848361	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	145110145	145110235	protein_coding	Gm13225	intron	ENSMUSG00000078503	NonProperStrand	18	1	-3.5676
chr4	132310693	132310761	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr11	48800889	48800934	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-6.9829
chr10	61554903	61555003	LTR	ORR1B1	MaLR	chr10ORR1B161554929	ProperStrand	3	chr10	61554786	61554876	SINE	RSINE1	B4	chr10RSINE161554714	NonProperStrand	3	3	-inf
chr6	3201470	3201545	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr1	75143399	75143427	protein_coding	Fam134a	exon	ENSMUSG00000049339	ProperStrand	4	1	-8.3508
chr5	26509933	26510023	LTR	MTEa-int	MaLR	chr5MTEa-int26509885	NonProperStrand	1	chr5	26509799	26509900	LTR	MTEa	MaLR	chr5MTEa26509548	NonProperStrand	1	1	-inf
chrX	136294013	136294103	LTR	RLTR45-int	ERVK	chrXRLTR45-int136292862	NonProperStrand	1	chrX	136294261	136294361	LTR	RLTR45-int	ERVK	chrXRLTR45-int136294214	NonProperStrand	1	1	-inf
chr14	47414860	47414936	LTR	RLTR10C	ERVK	chr14RLTR10C47414513	NonProperStrand	2	chr16	18533185	18533211	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	1	-19.8685
chr6	14109986	14110076	LINE	Lx	L1	chr6Lx14109649	ProperStrand	1	chr6	14110567	14110667	LTR	MTEa	MaLR	chr6MTEa14110593	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chrX	134366574	134366633	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-4.7694
chr1	192745573	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-12.4073
chr19	8713687	8722985	SINE	B3A	B2	chr19B3A8713670	NonProperStrand	2	chr19	8713576	8713625	SINE	B4A	B4	chr19B4A8713518	NonProperStrand	2	1	-19.8939
chr11	9132848	9132883	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	chr13	97190567	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.7433
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	88153470	88153490	protein_coding	Smg5	intron	ENSMUSG00000001415	ProperStrand	25	1	-7.8478
chr17	39847341	39847421	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	4167664	4167739	protein_coding	Lif	intron	ENSMUSG00000034394	ProperStrand	7	2	-4.7560
chr1	161035809	161035839	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr1	161035475	161035590	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	1	-13.1047
chr17	70963679	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr3	129576080	129576152	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-3.8789
chr4	56758291	56758381	LTR	RLTR14-int	ERV1	chr4RLTR14-int56758311	NonProperStrand	2	chr4	56758192	56758292	LTR	RLTR14	ERV1	chr4RLTR1456758136	NonProperStrand	4	2	-inf
chr1	161038079	161038163	LINE	L1MEc	L1	chr1L1MEc161037911	ProperStrand	9	chr17	39846389	39847012	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	4	-8.7826
chr6	47525263	47525389	protein_coding	Ezh2	intron	ENSMUSG00000029687	ProperStrand	27	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-11.5592
chr8	111947460	111947560	LINE	L1MB7	L1	chr8L1MB7111946880	NonProperStrand	1	chr8	111947607	111947697	LINE	L1MB7	L1	chr8L1MB7111947619	NonProperStrand	1	1	-inf
chr1	128165836	128165889	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	chr8	87501591	87501675	protein_coding	Junb	exon	ENSMUSG00000052837	NonProperStrand	11	1	-13.4010
chr15	79577054	79577076	lincRNA	Gm16576	intron	ENSMUSG00000087543	NonProperStrand	10	chrX	13113747	13114612	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-13.7466
chr1	39206214	39206314	SINE	B4A	B4	chr1B4A39206231	ProperStrand	1	chr1	39206129	39206219	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n39206090	ProperStrand	1	1	-inf
chr4	135412847	135412863	protein_coding	Srsf10	intron	ENSMUSG00000028676	ProperStrand	4	chr5	33742400	33742523	protein_coding	4933407H18Rik	intron	ENSMUSG00000037355	NonProperStrand	11	1	-inf
chr17	39847325	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	4365338	4365376	SINE	RSINE1	B4	chr10RSINE14365257	NonProperStrand	1	1	-inf
chr2	103612961	103613019	protein_coding	Caprin1	intron	ENSMUSG00000027184	NonProperStrand	22	chr2	103589367	103589435	protein_coding	Nat10	intron	ENSMUSG00000027185	NonProperStrand	54	1	-14.2711
chr17	39847778	39847882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	79908573	79908612	LTR	ORR1D2	MaLR	chr7ORR1D279908440	ProperStrand	2	1	-5.4040
chr15	25985107	25986821	LTR	RLTR25B	ERVK	chr15RLTR25B25985117	NonProperStrand	3	chr15	25985012	25985102	LTR	RLTR47_MM	ERV1	chr15RLTR47_MM25984650	NonProperStrand	16	3	-inf
chr17	39846941	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	69686962	69687051	SINE	B1_Mus1	Alu	chr11B1_Mus169686932	NonProperStrand	1	1	-inf
chr2	98667112	98667212	LINE	L1Md_F2	L1	chr2L1Md_F298667138	ProperStrand	27	chr9	3002088	3002178	lincRNA	Gm16869	intron	ENSMUSG00000087580	ProperStrand	4	1	-19.5587
chr18	65641592	65641664	LINE	L1_Mur3	L1	chr18L1_Mur365641456	NonProperStrand	3	chr4	34565182	34565244	protein_coding	Rars2	intron	ENSMUSG00000028292	ProperStrand	13	1	-inf
chr10	119389820	119389910	protein_coding	Grip1	intron	ENSMUSG00000034813	NonProperStrand	73	chr10	119819193	119819293	protein_coding	Hmga2	intron	ENSMUSG00000056758	ProperStrand	5	1	-16.8579
chr7	46905187	46905287	LTR	ORR1D1	MaLR	chr7ORR1D146905185	ProperStrand	1	chr7	46905306	46905396	Simple_repeat	(GA)n	Simple_repeat	chr7(GA)n46905329	NonProperStrand	1	1	-inf
chr8	117011138	117011227	protein_coding	Wwox	intron	ENSMUSG00000004637	NonProperStrand	44	chr14	79861435	79861455	protein_coding	Wbp4	utr3	ENSMUSG00000022023	ProperStrand	22	1	-14.6906
chr9	108309940	108309998	protein_coding	Ccdc36	intron	ENSMUSG00000047220	NonProperStrand	33	chr1	37884116	37884211	protein_coding	Tsga10	intron	ENSMUSG00000060771	ProperStrand	12	1	-16.5289
chr17	39847439	39847509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	15887959	15888039	pseudogene	Cebpd	.	ENSMUSG00000071637	ProperStrand	2	1	-5.4040
chrX	73026620	73026646	SINE	B1_Mm	Alu	chrXB1_Mm73026625	ProperStrand	5	chr12	78350926	78351010	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-11.0257
chr17	39846452	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	3410873	3410895	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	4	-4.1931
chr9	65201725	65201762	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr9	103581020	103581047	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-9.4010
chr10	122565777	122566001	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr15	35796609	35798464	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	4	-inf
chr12	55065257	55065302	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr17	84758276	84758324	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	1	-8.3235
chr13	57508782	57508800	LINE	L1MA4A	L1	chr13L1MA4A57508375	NonProperStrand	2	chr11	72447255	72447615	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	1	-18.2331
chr8	80856213	80856319	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr5	24030597	24030635	protein_coding	Gbx1	intron	ENSMUSG00000067724	ProperStrand	9	1	-11.1599
chr17	39847762	39847832	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	20617156	20617236	protein_coding	Zfp182	intron	ENSMUSG00000054737	ProperStrand	4	1	-3.7035
chr2	80523510	80523610	LINE	Lx9	L1	chr2Lx980523471	ProperStrand	1	chr2	80523348	80523438	LTR	ORR1E	MaLR	chr2ORR1E80523093	NonProperStrand	1	1	-inf
chr16	8732867	8732967	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr11	73083446	73083536	protein_coding	Trpv3	intron	ENSMUSG00000043029	NonProperStrand	6	2	-inf
chr10	80899677	80899728	SINE	B3	B2	chr10B380899552	ProperStrand	1	chr10	80899940	80899981	Satellite	ZP3AR	Satellite	chr10ZP3AR80899879	NonProperStrand	1	1	-inf
chr17	39848163	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	6963006	6963276	LTR	MYSERV6-int	ERVK	chr19MYSERV6-int6962841	ProperStrand	1	1	-inf
chr3	31398991	31399081	LINE	Lx8	L1	chr3Lx831399002	ProperStrand	1	chr3	31398854	31398954	Low_complexity	CT-rich	Low_complexity	chr3CT-rich31398810	NonProperStrand	1	1	-inf
chr2	22744878	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	32926374	32926458	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	1	-5.0922
chr6	95685664	95685764	LTR	MTD	MaLR	chr6MTD95685673	ProperStrand	1	chr6	95685876	95685966	SINE	B1_Mur4	Alu	chr6B1_Mur495685891	ProperStrand	1	1	-inf
chr10	112863750	112863840	Other	RMER1B	Other	chr10RMER1B112863541	ProperStrand	1	chr10	112863956	112864056	Other	RMER1B	Other	chr10RMER1B112863969	ProperStrand	1	1	-inf
chr10	83745185	83745252	LTR	MERVL_2A-int	ERVL	chr10MERVL_2A-int83743766	ProperStrand	1	chr10	83745375	83745432	LTR	ORR1A3-int	MaLR	chr10ORR1A3-int83745370	ProperStrand	1	1	-inf
chr1	146766174	146766264	LTR	MTA_Mm	MaLR	chr1MTA_Mm146766190	ProperStrand	2	chr1	146765945	146766046	LTR	RMER6A	ERVK	chr1RMER6A146765756	NonProperStrand	2	2	-inf
chr14	107835521	107835621	LINE	Lx2B	L1	chr14Lx2B107835514	ProperStrand	1	chr14	107835130	107835220	Low_complexity	GA-rich	Low_complexity	chr14GA-rich107835101	ProperStrand	1	1	-inf
chr17	39846462	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	156701459	156701500	protein_coding	Sla2	intron	ENSMUSG00000027636	NonProperStrand	3	1	-4.3017
chr8	63356193	63356210	LINE	L1VL4	L1	chr8L1VL463354824	NonProperStrand	1	chr17	39847370	39847412	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	40258494	40258521	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr5	123157861	123158403	protein_coding	P2rx4	intron	ENSMUSG00000029470	ProperStrand	14	1	-8.2730
chr12	119325153	119325186	protein_coding	Dnahc11	intron	ENSMUSG00000018581	ProperStrand	13	chr13	35812437	35812545	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-11.6098
chr17	39846430	39846452	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	24908197	24908287	Other	RMER1A	Other	chr13RMER1A24908137	NonProperStrand	1	1	-inf
chr2	118287644	118287744	protein_coding-noncoding	Eif2ak4	utr5	ENSMUSG00000005102	ProperStrand	1	chr2	118287552	118287642	protein_coding	Eif2ak4	exon	ENSMUSG00000005102	ProperStrand	6	1	-inf
chr17	39847136	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	28201039	28201287	SINE	B2_Mm1a	B2	chr17B2_Mm1a28200977	NonProperStrand	1	1	-inf
chr2	5379260	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr2	150242641	150242681	protein_coding	Zfp442	intron	ENSMUSG00000068130	NonProperStrand	31	1	-5.8357
chr1	179138037	179138136	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr4	132286862	132286906	protein_coding	Xkr8	exon	ENSMUSG00000037752	NonProperStrand	4	1	-14.4936
chr17	56257513	56257613	SINE	B1_Mm	Alu	chr17B1_Mm56257489	NonProperStrand	1	chr17	56257385	56257475	Simple_repeat	(TTCTCC)n	Simple_repeat	chr17(TTCTCC)n56257361	ProperStrand	1	1	-inf
chr17	35960924	35961102	protein_coding-noncoding	Flot1	utr5	ENSMUSG00000059714	NonProperStrand	2	chr17	35960829	35960929	protein_coding	Flot1	intron	ENSMUSG00000059714	NonProperStrand	20	2	-inf
chr2	155052880	155052910	SINE	B1_Mm	Alu	chr2B1_Mm155052768	NonProperStrand	1	chr2	155049345	155049439	protein_coding	Itch	intron	ENSMUSG00000027598	NonProperStrand	5	1	-inf
chr17	39847673	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	84318491	84318552	SINE	RSINE1	B4	chr17RSINE184318490	NonProperStrand	1	1	-inf
chr18	37712462	37712560	LINE	L1_Mur1	L1	chr18L1_Mur137710982	NonProperStrand	1	chr17	39846955	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	163517762	163517862	antisense	Gm16316	.	ENSMUSG00000087129	ProperStrand	1	chr2	163517994	163518084	protein_coding	Pkig	intron	ENSMUSG00000035268	NonProperStrand	2	1	-inf
chr6	148185237	148185282	protein_coding	Tmtc1	utr3	ENSMUSG00000030306	ProperStrand	64	chr8	27047073	27047108	protein_coding	Kcnu1	intron	ENSMUSG00000031576	ProperStrand	18	1	-14.3397
chr12	111633341	111633388	LINE	L1M4c	L1	chr12L1M4c111632813	NonProperStrand	2	chr17	39847559	39847609	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr3	89429340	89429430	protein_coding	Kcnn3	intron	ENSMUSG00000000794	ProperStrand	88	chr2	75694938	75695038	protein_coding	Agps	intron	ENSMUSG00000042410	NonProperStrand	122	2	-15.5232
chr4	98787198	98787288	protein_coding	Dock7	intron	ENSMUSG00000028556	ProperStrand	21	chr8	121715170	121715270	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	1	-10.7634
chr12	51761051	51761151	LINE	L1_Mus1	L1	chr12L1_Mus151760913	ProperStrand	1	chr12	51761149	51762493	LTR	RMER19B	ERVK	chr12RMER19B51761775	ProperStrand	1	1	-inf
chr8	22792843	22793074	LINE	L1Md_F2	L1	chr8L1Md_F222788989	ProperStrand	2	chr11	119158419	119158541	protein_coding	Eif4a3	intron	ENSMUSG00000025580	ProperStrand	7	2	-inf
chr17	13007980	13008042	antisense	Airn	.	ENSMUSG00000078247	ProperStrand	40	chr6	8256726	8256777	protein_coding	Gm16039	intron	ENSMUSG00000089862	NonProperStrand	6	1	-17.7587
chr16	43870928	43871018	protein_coding-noncoding	Qtrtd1	utr3	ENSMUSG00000022704	ProperStrand	5	chr16	43870792	43870892	protein_coding	Qtrtd1	intron	ENSMUSG00000022704	ProperStrand	26	4	-inf
chr5	146260996	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	15736871	15737834	protein_coding	Prkdc	intron	ENSMUSG00000022672	NonProperStrand	18	1	-7.4564
chr17	39846169	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	111212147	111212240	Simple_repeat	(GGGGA)n	Simple_repeat	chr8(GGGGA)n111212064	NonProperStrand	1	1	-inf
chr10	43926964	43927052	LINE	L1Md_F2	L1	chr10L1Md_F243925596	NonProperStrand	2	chr17	39846476	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	20710321	20710392	LTR	MTEb	MaLR	chr11MTEb20710232	ProperStrand	1	chr17	39846834	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	173023742	173023832	LTR	ORR1A4	MaLR	chr1ORR1A4173023683	ProperStrand	1	chr1	173023882	173023982	SINE	B1_Mus1	Alu	chr1B1_Mus1173023871	ProperStrand	1	1	-inf
chr10	11226298	11226368	LTR	LTR41	ERVL	chr10LTR4111226296	NonProperStrand	1	chr5	135392327	135392387	SINE	B1_Mus1	Alu	chr5B1_Mus1135392229	ProperStrand	1	1	-inf
chr4	53860723	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr5	124382824	124382873	protein_coding	Ccdc62	intron	ENSMUSG00000061882	NonProperStrand	30	1	-10.8262
chr5	34761820	34761862	protein_coding	Fam193a	intron	ENSMUSG00000037210	ProperStrand	38	chr17	33952057	33952235	protein_coding	Kank3	intron	ENSMUSG00000042099	NonProperStrand	107	1	-11.7819
chr10	83384557	83384601	LTR	RLTR17	ERVK	chr10RLTR1783384284	NonProperStrand	11	chr15	95474055	95474074	protein_coding	Dbx2	intron	ENSMUSG00000045608	ProperStrand	4	1	-inf
chr14	55079476	55079576	LINE	Lx8	L1	chr14Lx855079436	NonProperStrand	4	chr14	55079581	55079671	SINE	B3	B2	chr14B355079592	NonProperStrand	4	4	-inf
chr11	118053330	118053366	protein_coding	Cyth1	intron	ENSMUSG00000017132	NonProperStrand	253	chr8	121563691	121563790	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	1	-5.7898
chr13	55122395	55122485	protein_coding-noncoding	Hk3	utr5	ENSMUSG00000025877	NonProperStrand	5	chr13	55122481	55122581	protein_coding	Hk3	utr5	ENSMUSG00000025877	NonProperStrand	30	4	-22.0080
chr8	95085379	95085430	LTR	MTEa	MaLR	chr8MTEa95085325	ProperStrand	1	chr8	95085850	95085957	SINE	B1F	Alu	chr8B1F95085872	NonProperStrand	1	1	-inf
chr8	119760118	119760164	LTR	ORR1B1	MaLR	chr8ORR1B1119760026	ProperStrand	1	chr9	123461931	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	66751897	66751952	protein_coding	Rpe	intron	ENSMUSG00000026005	ProperStrand	8	chr1	66744806	66744885	protein_coding	Unc80	utr3	ENSMUSG00000055567	ProperStrand	34	1	-17.3098
chr17	39846753	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	100145849	100145888	antisense	Gm14206	.	ENSMUSG00000086163	ProperStrand	1	1	-inf
chr9	20911438	20911456	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	20	chr2	167512701	167512806	protein_coding	Tmem189	intron	ENSMUSG00000090213	NonProperStrand	16	1	-16.9430
chr14	23973825	23973884	LINE	L1Md_F	L1	chr14L1Md_F23973514	NonProperStrand	1	chr17	39845360	39845440	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	1	-inf
chr6	7561482	7561571	LINE	Lx2B	L1	chr6Lx2B7561190	ProperStrand	1	chr10	61943313	61943413	protein_coding	Vps26a	exon	ENSMUSG00000020078	ProperStrand	3	1	-inf
chr14	121303314	121303368	SINE	B1_Mus2	Alu	chr14B1_Mus2121303285	NonProperStrand	1	chr14	121304487	121304550	SINE	ID_B1	B4	chr14ID_B1121304426	NonProperStrand	1	1	-inf
chr11	45325216	45325234	SINE	B4A	B4	chr11B4A45325034	ProperStrand	3	chr9	123462085	123462104	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr15	51827534	51827586	LINE	Lx5	L1	chr15Lx551827024	NonProperStrand	2	chr15	51827929	51827991	SINE	B1_Mm	Alu	chr15B1_Mm51827857	NonProperStrand	1	1	-inf
chr9	59678893	59678956	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr6	148777281	148777360	protein_coding	Ipo8	intron	ENSMUSG00000040029	ProperStrand	9	1	-10.1483
chr18	80117813	80117893	LINE	L1_Mus1	L1	chr18L1_Mus180116572	ProperStrand	2	chr18	80119048	80119100	LINE	Lx4B	L1	chr18Lx4B80118782	NonProperStrand	1	1	-inf
chr9	35556822	35556877	LINE	L1Md_F3	L1	chr9L1Md_F335556146	ProperStrand	1	chr17	39847717	39847762	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	96434020	96434120	protein_coding	Rbm8a	intron	ENSMUSG00000038374	ProperStrand	1	chr3	96433630	96433720	pseudogene	6330549D23Rik	.	ENSMUSG00000045327	NonProperStrand	2	1	-inf
chr6	37926885	37926912	LTR	MERVL-int	ERVL	chr6MERVL-int37924253	ProperStrand	1	chr11	115123814	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	1	-inf
chr17	45568910	45568977	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr5	121958001	121958073	protein_coding	Tmem116	intron	ENSMUSG00000029452	NonProperStrand	41	1	-9.5653
chr17	39847473	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	54812140	54812195	LTR	ORR1A2	MaLR	chr9ORR1A254812056	ProperStrand	1	1	-inf
chr1	80181487	80181577	LINE	L1Md_F3	L1	chr1L1Md_F380181475	NonProperStrand	1	chr1	80181138	80181238	LTR	ORR1A3	MaLR	chr1ORR1A380181129	NonProperStrand	1	1	-inf
chr2	167027708	167027916	antisense	Gm14291	.	ENSMUSG00000086098	ProperStrand	8	chr9	123461903	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr11	120632349	120632430	LTR	RMER6A	ERVK	chr11RMER6A120632223	ProperStrand	1	chr6	32227213	32227236	protein_coding	Plxna4	intron	ENSMUSG00000029765	ProperStrand	8	1	-inf
chr5	122870771	122870848	LTR	RLTR10A	ERVK	chr5RLTR10A122870478	ProperStrand	2	chr5	122871556	122871601	SINE	B2_Mm2	B2	chr5B2_Mm2122871522	ProperStrand	1	1	-inf
chr16	76128205	76128305	LTR	MLT1B	MaLR	chr16MLT1B76128062	ProperStrand	1	chr16	76128518	76128608	LTR	MTE2a	MaLR	chr16MTE2a76128388	ProperStrand	1	1	-inf
chr11	76526169	76526269	SINE	B3	B2	chr11B376526116	ProperStrand	2	chr11	76526311	76526401	Simple_repeat	(TAGA)n	Simple_repeat	chr11(TAGA)n76526301	NonProperStrand	3	2	-inf
chr18	36752461	36753294	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	chr2	69900520	69900635	protein_coding	Myo3b	intron	ENSMUSG00000042064	ProperStrand	45	1	-12.5696
chr4	96382969	96383047	LINE	Lx9	L1	chr4Lx996382456	ProperStrand	1	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr3	95086737	95086837	protein_coding-noncoding	Fam63a	utr5	ENSMUSG00000038712	NonProperStrand	2	chr3	95087539	95087629	protein_coding	Fam63a	utr3	ENSMUSG00000038712	NonProperStrand	16	1	-inf
chr19	5598132	5598505	LTR	RodERV21-int	ERV1	chr19RodERV21-int5598061	ProperStrand	2	chr19	5598560	5598667	LTR	RodERV21-int	ERV1	chr19RodERV21-int5598489	ProperStrand	2	2	-inf
chr17	39846579	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	25503798	25503856	LTR	RMER15	ERVL	chr7RMER1525503705	NonProperStrand	1	1	-inf
chrX	103471754	103471854	LINE	L1Md_F2	L1	chrXL1Md_F2103469145	NonProperStrand	25	chr2	29490865	29490955	protein_coding	Rapgef1	intron	ENSMUSG00000039844	ProperStrand	77	1	-13.2953
chr17	39847531	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	14195640	14195692	protein_coding	Gm7358	exon	ENSMUSG00000090562	ProperStrand	2	1	-5.4040
chr14	45625437	45625508	antisense	Gm17173	.	ENSMUSG00000090709	ProperStrand	9	chr4	147508451	147508483	protein_coding	Mad2l2	intron	ENSMUSG00000029003	ProperStrand	4	1	-inf
chr1	119586614	119586672	LINE	L1Md_F3	L1	chr1L1Md_F3119585691	NonProperStrand	1	chr1	72370176	72370230	protein_coding	Xrcc5	intron	ENSMUSG00000026187	ProperStrand	76	1	-inf
chrX	103957772	103957805	LINE	L1MA6	L1	chrXL1MA6103957700	ProperStrand	2	chr17	39847037	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr14	28381099	28381202	LTR	IAPLTR3-int	ERVK	chr14IAPLTR3-int28375594	ProperStrand	3	chr11	4176343	4176488	lincRNA	Gm11959	intron	ENSMUSG00000085559	ProperStrand	18	1	-23.1775
chr5	41602574	41602674	LINE	L1VL4	L1	chr5L1VL441602267	NonProperStrand	1	chr5	41602096	41602186	LTR	ORR1A1	MaLR	chr5ORR1A141601940	ProperStrand	1	1	-inf
chr12	20238198	20238293	LTR	MMERGLN-int	ERV1	chr12MMERGLN-int20232758	NonProperStrand	17	chr14	19278161	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-14.1117
chr11	120598595	120599274	LTR	MTB-int	MaLR	chr11MTB-int120598499	NonProperStrand	1	chr9	123462102	123462148	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	122357170	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr10	80826879	80828252	protein_coding	Mfsd12	utr3	ENSMUSG00000034854	ProperStrand	42	1	-9.6261
chr15	83102639	83102977	LTR	RLTR1C	ERV1	chr15RLTR1C83102878	ProperStrand	1	chr17	39847440	39847537	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	6131516	6131535	LTR	MER74A	ERVL	chr12MER74A6131262	ProperStrand	2	chr13	67666689	67666782	LTR	RMER19B	ERVK	chr13RMER19B67666296	ProperStrand	1	1	-inf
chr6	3201469	3201512	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	39843538	39843571	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	23	1	-4.6887
chr2	102829379	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr11	107479549	107479617	protein_coding	Helz	intron	ENSMUSG00000020721	ProperStrand	27	2	-18.1012
chr1	161035848	161036138	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr17	39847640	39848074	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	7	-4.9419
chr9	72479458	72479572	SINE	RSINE1	B4	chr9RSINE172479488	NonProperStrand	6	chr1	138832758	138832775	protein_coding	Nr5a2	intron	ENSMUSG00000026398	NonProperStrand	6	1	-inf
chr3	6391832	6391922	SINE	B3	B2	chr3B36391812	NonProperStrand	1	chr1	79607151	79607251	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	10	1	-inf
chr7	49849055	49849098	LTR	MT2A	ERVL	chr7MT2A49849052	NonProperStrand	1	chr7	49842022	49842082	protein_coding	Gm7221	intron	ENSMUSG00000092335	NonProperStrand	22	1	-inf
chr1	139454903	139454963	LINE	L1Md_T	L1	chr1L1Md_T139453630	NonProperStrand	3	chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr11	109011650	109011702	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	100481497	100481756	protein_coding	Nkiras2	intron	ENSMUSG00000017837	NonProperStrand	16	1	-8.7572
chr11	110432582	110432641	LINE	L1Md_F2	L1	chr11L1Md_F2110432065	ProperStrand	2	chr11	110422618	110422670	SINE	B4A	B4	chr11B4A110422513	NonProperStrand	1	1	-inf
chr16	35103900	35103970	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	chr3	41440648	41440696	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	1	-7.0988
chr9	27533458	27533548	LINE	L1_Mur2	L1	chr9L1_Mur227533010	ProperStrand	1	chr9	27533942	27534042	LINE	L1_Mur2	L1	chr9L1_Mur227533777	ProperStrand	1	1	-inf
chr8	127563351	127563441	SINE	B1_Mus2	Alu	chr8B1_Mus2127563357	ProperStrand	3	chr8	127563531	127563631	SINE	RSINE1	B4	chr8RSINE1127563527	ProperStrand	3	3	-inf
chr4	132679514	132679614	SINE	B1_Mus1	Alu	chr4B1_Mus1132679485	NonProperStrand	1	chr4	132679208	132679298	SINE	PB1D7	Alu	chr4PB1D7132679164	NonProperStrand	1	1	-inf
chr15	80081654	80082490	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chrX	13202575	13202668	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	5	-20.6913
chr9	37508097	37508170	LINE	Lx4B	L1	chr9Lx4B37507683	NonProperStrand	6	chr12	85933430	85933479	protein_coding	Vsx2	intron	ENSMUSG00000021239	ProperStrand	10	1	-21.3688
chr15	81319489	81319508	SINE	B1_Mus1	Alu	chr15B1_Mus181319373	ProperStrand	1	chr15	81319223	81319309	SINE	B1_Mus2	Alu	chr15B1_Mus281319245	NonProperStrand	1	1	-inf
chr15	79522905	79524813	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	ProperStrand	18	chr13	94851678	94851704	protein_coding	Lhfpl2	intron	ENSMUSG00000045312	NonProperStrand	30	1	-15.8742
chr8	83918912	83919017	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr10	69340480	69340521	protein_coding	Ank3	intron	ENSMUSG00000069601	NonProperStrand	77	1	-6.0243
chr1	36808983	36809073	DNA	MER20	MER1_type	chr1MER2036809003	NonProperStrand	1	chr1	36808863	36808963	Simple_repeat	(TATG)n	Simple_repeat	chr1(TATG)n36808738	NonProperStrand	2	1	-inf
chr17	39843361	39843401	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	56937912	56937962	protein_coding	Sin3a	intron	ENSMUSG00000042557	ProperStrand	25	1	-4.1672
chr12	112630700	112630800	LTR	IAPEz-int	ERVK	chr12IAPEz-int112627986	ProperStrand	1	chr12	112623755	112623786	SINE	B4	B4	chr12B4112623600	ProperStrand	1	1	-inf
chr10	77992488	77993431	LINE	L1_Mur3	L1	chr10L1_Mur377992233	ProperStrand	10	chr17	4082172	4082262	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	1	-11.3158
chr10	21480508	21480526	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	11	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	1	-17.4714
chr13	47388265	47388365	LTR	RMER17B	ERVK	chr13RMER17B47387801	NonProperStrand	1	chr13	47388377	47388467	SINE	B3	B2	chr13B347388367	NonProperStrand	1	1	-inf
chr1	51499972	51500072	LINE	L1Md_A	L1	chr1L1Md_A51500000	NonProperStrand	1	chr1	85092297	85092387	protein_coding	A530032D15Rik	intron	ENSMUSG00000089844	NonProperStrand	2	1	-inf
chr5	107842096	107842112	antisense	Gm17202	.	ENSMUSG00000090558	ProperStrand	12	chr5	124895922	124896042	protein_coding-noncoding	Setd8	utr5	ENSMUSG00000049327	ProperStrand	1	1	-inf
chr15	59937595	59937685	SINE	B4A	B4	chr15B4A59937399	NonProperStrand	1	chr15	59937812	59937912	SINE	MIRb	MIR	chr15MIRb59937808	NonProperStrand	1	1	-inf
chr13	82533445	82533535	LINE	L1ME2	L1	chr13L1ME282533410	NonProperStrand	1	chr13	82973462	82973562	LINE	Lx2B	L1	chr13Lx2B82973368	ProperStrand	1	1	-inf
chr17	70794802	70889781	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr17	70755811	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	3	-7.2602
chr2	32703961	32704051	SINE	B1_Mur3	Alu	chr2B1_Mur332703952	NonProperStrand	2	chr2	32703771	32703871	SINE	B2_Mm2	B2	chr2B2_Mm232703723	NonProperStrand	2	2	-inf
chr12	19863654	19863744	LTR	RLTR11A2	ERVK	chr12RLTR11A219863673	ProperStrand	1	chr12	19863542	19863642	SINE	B1_Mm	Alu	chr12B1_Mm19863526	ProperStrand	1	1	-inf
chr17	94749701	94749749	LINE	L1_Mus1	L1	chr17L1_Mus194747863	NonProperStrand	1	chr12	34803298	34803377	protein_coding	Hdac9	intron	ENSMUSG00000004698	ProperStrand	15	1	-inf
chr12	31896390	31896490	LTR	MTA_Mm	MaLR	chr12MTA_Mm31896322	NonProperStrand	4	chr12	31895488	31895578	SINE	B4A	B4	chr12B4A31895441	NonProperStrand	4	4	-inf
chr6	30889982	30890054	lincRNA	4930412F09Rik	intron	ENSMUSG00000085321	NonProperStrand	17	chr2	5379261	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.0412
chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr4	119282389	119282827	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	1	-7.9012
chr8	106790935	106790971	SINE	B1_Mur2	Alu	chr8B1_Mur2106790941	ProperStrand	1	chr8	106782877	106782942	protein_coding	Cklf	intron	ENSMUSG00000054400	ProperStrand	5	1	-inf
chr17	21389515	21389615	LINE	L1_Mur2	L1	chr17L1_Mur221389503	NonProperStrand	1	chr17	21389301	21389391	LINE	L1_Mus1	L1	chr17L1_Mus121389109	NonProperStrand	1	1	-inf
chr17	24700331	24700348	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr11	116842460	116842569	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	38	1	-9.9216
chr7	29214554	29214644	SINE	B1F1	Alu	chr7B1F129214578	NonProperStrand	1	chr7	29215091	29215191	SINE	B3	B2	chr7B329215112	NonProperStrand	1	1	-inf
chr17	45570469	45570561	protein_coding	Cdc5l	utr5	ENSMUSG00000023932	ProperStrand	300	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.4463
chr13	28091430	28091520	LINE	L1Md_F2	L1	chr13L1Md_F228091423	NonProperStrand	1	chr13	28091264	28091364	LTR	ORR1B2	MaLR	chr13ORR1B228091132	NonProperStrand	1	1	-inf
chr17	39847854	39847895	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr9	119241099	119241130	LTR	ORR1A2	MaLR	chr9ORR1A2119240887	ProperStrand	2	2	-inf
chr8	28826522	28826612	LINE	Lx9	L1	chr8Lx928826319	NonProperStrand	1	chr8	28826764	28826864	LTR	RLTR15	ERVK	chr8RLTR1528826712	ProperStrand	1	1	-inf
chr1	74275854	74275912	LINE	L1Md_F2	L1	chr1L1Md_F274275444	ProperStrand	1	chr1	74269796	74269879	SINE	B3	B2	chr1B374269667	NonProperStrand	1	1	-inf
chr17	39846658	39846742	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	137934776	137934822	SINE	RSINE1	B4	chr4RSINE1137934770	ProperStrand	2	2	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr8	126945669	126945789	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-8.5224
chr2	35461281	35461336	protein_coding	Dab2ip	intron	ENSMUSG00000026883	NonProperStrand	42	chr13	97190548	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8202
chr11	97166109	97167609	SINE	B2_Mm2	B2	chr11B2_Mm297167457	ProperStrand	5	chr14	45621050	45621086	antisense	Gm17173	.	ENSMUSG00000090709	ProperStrand	9	1	-inf
chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-9.2461
chr9	45808537	45808587	LINE	Lx8	L1	chr9Lx845808335	NonProperStrand	2	chr2	121739310	121739372	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-18.6632
chr17	39846415	39846505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	36879445	36880567	SINE	B1_Mus2	Alu	chr19B1_Mus236880460	ProperStrand	1	1	-inf
chr18	80762088	80762120	LINE	HAL1-2a_MD	L1	chr18HAL1-2a_MD80761852	NonProperStrand	1	chr3	27126900	27126943	protein_coding	Nceh1	intron	ENSMUSG00000027698	NonProperStrand	62	1	-inf
chr5	135440567	135440657	SINE	B3	B2	chr5B3135440588	NonProperStrand	1	chr11	69847571	69847754	protein_coding	Dlg4	intron	ENSMUSG00000020886	NonProperStrand	14	1	-inf
chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	30463959	30463995	protein_coding	Cstad	utr3	ENSMUSG00000047363	ProperStrand	17	1	-3.3592
chr1	72824556	72824642	LTR	MLT1B	MaLR	chr1MLT1B72824512	NonProperStrand	58	chr2	5379289	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.6132
chr1	54631435	54631534	LINE	L1_Mur3	L1	chr1L1_Mur354631462	NonProperStrand	1	chr1	54631400	54631427	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n54631346	NonProperStrand	1	1	-inf
chr17	48487338	48487364	protein_coding-noncoding	Trem2	utr5	ENSMUSG00000023992	ProperStrand	1	chr17	48487769	48487885	protein_coding	Trem2	exon	ENSMUSG00000023992	ProperStrand	1	1	-inf
chr19	26669979	26670069	LTR	LTR33A_	ERVL	chr19LTR33A_26669987	NonProperStrand	1	chr19	26669776	26669876	Low_complexity	GA-rich	Low_complexity	chr19GA-rich26669705	NonProperStrand	1	1	-inf
chr8	91638383	91638490	LINE	L1_Mur2	L1	chr8L1_Mur291637750	ProperStrand	7	chr17	39847257	39847289	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-6.4010
chr5	97429865	97429923	protein_coding	Bmp2k	intron	ENSMUSG00000034663	ProperStrand	31	chr12	80802002	80802076	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-11.1747
chr2	4884592	4889213	LTR	RLTR9A	ERVK	chr2RLTR9A4888905	ProperStrand	1	chr2	91784329	91784395	protein_coding	Dgkz	intron	ENSMUSG00000040479	NonProperStrand	16	1	-inf
chr19	60257988	60258088	LTR	MT2A	ERVL	chr19MT2A60257652	NonProperStrand	1	chr19	60258147	60258237	LTR	ORR1B1	MaLR	chr19ORR1B160258064	NonProperStrand	1	1	-inf
chr6	16180223	16180323	LTR	MLT1B	MaLR	chr6MLT1B16180015	NonProperStrand	1	chr6	16180322	16180412	LTR	MTD	MaLR	chr6MTD16180319	NonProperStrand	1	1	-inf
chr16	19320299	19320389	LTR	MYSERV16_I-int	ERVK	chr16MYSERV16_I-int19320124	ProperStrand	1	chr16	19320836	19320936	SINE	B1_Mus1	Alu	chr16B1_Mus119320862	ProperStrand	1	1	-inf
chr1	72177255	72177311	LTR	IAPEz-int	ERVK	chr1IAPEz-int72172467	ProperStrand	26	chr13	97190550	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.7743
chr5	114107317	114107407	Simple_repeat	(TGGA)n	Simple_repeat	chr5(TGGA)n114107236	ProperStrand	1	chr5	114107475	114107575	Simple_repeat	(TGGA)n	Simple_repeat	chr5(TGGA)n114107424	ProperStrand	1	1	-inf
chr7	28386522	28386540	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	15	chr16	21504216	21504349	protein_coding	Vps8	intron	ENSMUSG00000033653	ProperStrand	86	1	-14.1202
chr8	114774964	114775014	LINE	Lx7	L1	chr8Lx7114774922	NonProperStrand	10	chr8	114779624	114779718	LINE	Lx7	L1	chr8Lx7114779280	NonProperStrand	2	1	-20.0413
chr3	129590985	129591015	protein_coding	Pla2g12a	intron	ENSMUSG00000027999	ProperStrand	35	chr3	129566790	129566912	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-10.6853
chr4	131884334	131884424	protein_coding-noncoding	Trnau1ap	utr3	ENSMUSG00000028898	NonProperStrand	9	chr4	131884417	131884517	protein_coding	Trnau1ap	intron	ENSMUSG00000028898	NonProperStrand	42	2	-inf
chr13	44736394	44736484	LINE	L1_Mus1	L1	chr13L1_Mus144736361	NonProperStrand	2	chr13	44736500	44736600	LINE	L1_Mus1	L1	chr13L1_Mus144736490	NonProperStrand	12	2	-inf
chr6	96054274	96054364	LTR	MTE2b	MaLR	chr6MTE2b96054289	ProperStrand	1	chr6	96053650	96053750	LTR	ORR1D1	MaLR	chr6ORR1D196053599	ProperStrand	1	1	-inf
chr8	91103063	91103136	protein_coding	Nkd1	intron	ENSMUSG00000031661	ProperStrand	33	chr11	48803158	48803185	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-10.4749
chr1	40939282	40939372	Low_complexity	polypyrimidine	Low_complexity	chr1polypyrimidine40939235	NonProperStrand	1	chr1	40939026	40939126	Simple_repeat	(TTCTCC)n	Simple_repeat	chr1(TTCTCC)n40939052	NonProperStrand	1	1	-inf
chr9	110946058	110946079	LINE	Lx3C	L1	chr9Lx3C110945252	ProperStrand	16	chr19	46795418	46795533	protein_coding	As3mt	intron	ENSMUSG00000003559	ProperStrand	85	1	-14.0110
chr17	39846820	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	122870731	122870774	LTR	RLTR10A	ERVK	chr5RLTR10A122870478	ProperStrand	2	1	-5.3533
chr9	113959317	113959407	SINE	B1F2	Alu	chr9B1F2113959289	ProperStrand	2	chr9	113959435	113959535	SINE	B2_Mm2	B2	chr9B2_Mm2113959444	ProperStrand	2	2	-inf
chr4	117202570	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr8	123017015	123017073	protein_coding	Gse1	intron	ENSMUSG00000031822	NonProperStrand	68	1	-13.4646
chr9	19097579	19097609	LINE	L1Md_T	L1	chr9L1Md_T19092894	ProperStrand	1	chr11	87426782	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-inf
chr15	79717656	79717746	SINE	B2_Mm1a	B2	chr15B2_Mm1a79717612	NonProperStrand	2	chr5	104518859	104518959	protein_coding	Sparcl1	intron	ENSMUSG00000029309	NonProperStrand	16	2	-inf
chr18	36578752	36581111	protein_coding	Pfdn1	intron	ENSMUSG00000024346	NonProperStrand	30	chr2	35663874	35663957	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	1	-9.0692
chr4	5659645	5659715	protein_coding-noncoding	Fam110b	utr5	ENSMUSG00000049119	ProperStrand	3	chr4	5653057	5653137	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	2	-20.5682
chr6	6077756	6077818	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr6	112684392	112684476	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	95	1	-8.5159
chr14	89326032	89326132	SINE	B1_Mm	Alu	chr14B1_Mm89326023	ProperStrand	1	chr14	122790655	122790745	protein_coding	Clybl	intron	ENSMUSG00000025545	NonProperStrand	8	1	-inf
chr11	32643720	32643771	protein_coding	Fbxw11	intron	ENSMUSG00000020271	ProperStrand	39	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.8244
chr17	10213350	10213450	LINE	L1Md_F2	L1	chr17L1Md_F210212271	ProperStrand	3	chr17	39846703	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39847248	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	44335286	44335369	SINE	MIR3	MIR	chr9MIR344335277	NonProperStrand	16	2	-3.8817
chr16	61539565	61539665	LINE	L1Md_T	L1	chr16L1Md_T61539549	NonProperStrand	1	chr16	61539416	61539506	LTR	MYSERV16_I-int	ERVK	chr16MYSERV16_I-int61539098	ProperStrand	1	1	-inf
chr17	39847276	39847316	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	25364891	25413554	SINE	B3	B2	chr15B325364850	ProperStrand	1	1	-inf
chr18	61588662	61588762	LINE	L1MB5	L1	chr18L1MB561588683	NonProperStrand	4	chr18	61588569	61588660	SINE	B1_Mur4	Alu	chr18B1_Mur461588520	NonProperStrand	1	1	-inf
chr12	78350923	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr4	24497858	24497928	protein_coding	Mms22l	intron	ENSMUSG00000045751	ProperStrand	30	1	-7.2740
chr17	39846776	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	7607139	7607155	protein_coding	Atl3	intron	ENSMUSG00000024759	NonProperStrand	1	1	-inf
chr13	96787846	96787945	protein_coding	Sv2c	intron	ENSMUSG00000051111	NonProperStrand	14	chr1	102000750	102000768	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	ProperStrand	27	1	-16.5684
chr18	80248792	80248846	protein_coding	Pard6g	intron	ENSMUSG00000056214	ProperStrand	48	chrX	151361669	151361694	protein_coding	Magea6	intron	ENSMUSG00000063728	NonProperStrand	2	1	-19.4027
chr16	35981730	35981798	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr2	147040866	147040943	lincRNA	Nkx2-2as	intron	ENSMUSG00000086509	ProperStrand	37	1	-11.0931
chr9	18298029	18298094	LINE	L1Md_F2	L1	chr9L1Md_F218293352	ProperStrand	4	chr13	29910023	29910121	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	4	-inf
chr17	39848165	39848274	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	18321712	18321730	protein_coding	Cttnbp2	intron	ENSMUSG00000000416	ProperStrand	3	1	-7.3534
chr8	95718715	95718805	protein_coding-noncoding	Ces1d	utr3	ENSMUSG00000056973	ProperStrand	1	chr8	95718519	95718619	protein_coding	Ces1d	intron	ENSMUSG00000056973	ProperStrand	15	1	-inf
chr5	123710855	123710950	protein_coding	Wdr66	intron	ENSMUSG00000029442	NonProperStrand	48	chr12	103482530	103482585	protein_coding	Slc24a4	intron	ENSMUSG00000041771	ProperStrand	12	1	-15.7496
chr7	26713465	26713555	LTR	ORR1A4-int	MaLR	chr7ORR1A4-int26713425	ProperStrand	1	chr7	26713275	26713375	LTR	ORR1A4	MaLR	chr7ORR1A426713096	ProperStrand	1	1	-inf
chr17	39847429	39847693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	4078295	4078513	snoRNA	ENSMUSG00000064400_U3	.	ENSMUSG00000064400	ProperStrand	6	3	-8.2102
chrX	96167358	96167425	LINE	L1M4	L1	chrXL1M496166872	NonProperStrand	2	chr17	39847636	39847655	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	24917234	24917305	SINE	B3	B2	chr17B324917088	NonProperStrand	5	chr10	79740842	79740923	protein_coding	Dazap1	intron	ENSMUSG00000069565	NonProperStrand	17	3	-20.1544
chr12	78350926	78351022	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr12	109583263	109583320	protein_coding	Cyp46a1	intron	ENSMUSG00000021259	ProperStrand	108	1	-4.7535
chr16	92072778	92072836	protein_coding	Mrps6	intron	ENSMUSG00000039680	ProperStrand	46	chr16	92086443	92086514	protein_coding	Slc5a3	utr3	ENSMUSG00000089774	ProperStrand	25	1	-14.3336
chr2	146481050	146481140	LINE	Lx9	L1	chr2Lx9146480660	NonProperStrand	1	chr2	106184498	106184598	protein_coding	Dcdc5	intron	ENSMUSG00000074981	ProperStrand	5	1	-inf
chr6	30208226	30208246	protein_coding	Ube2h	intron	ENSMUSG00000039159	ProperStrand	50	chr5	124460797	124460827	protein_coding	Vps37b	exon	ENSMUSG00000066278	ProperStrand	6	1	-17.2698
chr3	114311731	114311831	LINE	L1Md_F2	L1	chr3L1Md_F2114305782	ProperStrand	1	chr16	98063138	98063228	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	1	-inf
chr9	99944849	99944949	LINE	L1MC4	L1	chr9L1MC499944752	ProperStrand	1	chr9	99945021	99945111	LTR	MER21B	ERV1	chr9MER21B99945045	NonProperStrand	1	1	-inf
chr9	108592288	108592367	SINE	PB1	Alu	chr9PB1108592259	ProperStrand	1	chr9	60299938	60300018	protein_coding	Thsd4	intron	ENSMUSG00000032289	ProperStrand	50	1	-inf
chr17	53506475	53506501	LTR	MERVL-int	ERVL	chr17MERVL-int53505905	NonProperStrand	3	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-15.2714
chr10	117057824	117057863	LTR	MTD	MaLR	chr10MTD117057781	NonProperStrand	2	chr17	39843482	39843550	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr14	55881605	55881666	Low_complexity	G-rich	Low_complexity	chr14G-rich55881618	ProperStrand	1	chr9	123461905	123461945	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	48913045	48914895	protein_coding	Phf2	exon	ENSMUSG00000038025	ProperStrand	92	chr13	44869574	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.6873
chr11	53271834	53271927	protein_coding	Shroom1	intron	ENSMUSG00000018387	NonProperStrand	5	chr1	190798663	190798718	protein_coding	Kctd3	intron	ENSMUSG00000026608	ProperStrand	35	1	-18.2660
chr6	55039964	55040053	DNA	Charlie2b	MER1_type	chr6Charlie2b55039900	ProperStrand	1	chr6	55040157	55040257	protein_coding	Crhr2	utr3	ENSMUSG00000003476	NonProperStrand	33	1	-inf
chr2	174076728	174076828	DNA	Cheshire	MER1_type	chr2Cheshire174076699	NonProperStrand	2	chr2	174076610	174076700	Simple_repeat	(TAGA)n	Simple_repeat	chr2(TAGA)n174076614	ProperStrand	6	2	-inf
chr15	58873627	58873740	protein_coding	Mtss1	intron	ENSMUSG00000022353	NonProperStrand	27	chr7	123166521	123166559	protein_coding	Sox6	intron	ENSMUSG00000051910	NonProperStrand	155	1	-11.7324
chr4	136241013	136241030	protein_coding	Ephb2	intron	ENSMUSG00000028664	ProperStrand	4	chr14	11780824	11780874	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-13.5445
chr2	109900424	109900535	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	chr5	114852386	114852411	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-6.4338
chr5	138345392	138345445	protein_coding	Cyp3a13	intron	ENSMUSG00000029727	NonProperStrand	23	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.5654
chr17	39848486	39848538	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	100913418	100913480	LINE	L1Md_T	L1	chr7L1Md_T100913138	ProperStrand	4	1	-6.9461
chr11	84178720	84178823	protein_coding	Acaca	intron	ENSMUSG00000020532	NonProperStrand	76	chr1	84145379	84145411	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	1	-9.7628
chr17	39847460	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	20201629	20215647	SINE	PB1D10	Alu	chr11PB1D1020201559	ProperStrand	1	1	-inf
chr12	111175379	111175447	LINE	L1MB5	L1	chr12L1MB5111174586	NonProperStrand	1	chr6	140463720	140463798	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	1	-inf
chr11	35953019	35954455	protein_coding-noncoding	Odz2	utr3	ENSMUSG00000049336	ProperStrand	6	chr11	35952898	35953940	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	4	-inf
chr7	11740824	11740914	LINE	Lx3_Mus	L1	chr7Lx3_Mus11739768	ProperStrand	1	chr7	11740948	11741048	LINE	Lx3_Mus	L1	chr7Lx3_Mus11740835	ProperStrand	1	1	-inf
chr4	103937385	103937485	protein_coding	Dab1	intron	ENSMUSG00000028519	NonProperStrand	38	chr4	99935434	99935524	protein_coding	Ror1	intron	ENSMUSG00000035305	ProperStrand	128	2	-18.0525
chr6	124742845	124742914	SINE	ID_B1	B4	chr6ID_B1124742836	ProperStrand	1	chr9	123462082	123462174	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	108107896	108107957	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr13	44869574	44869645	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.9629
chr2	181681327	181681417	Satellite	MMSAT4	Satellite	chr2MMSAT4181681153	NonProperStrand	4	chr2	181681425	181681525	Unknown	MurSatRep1	Unknown	chr2MurSatRep1181681396	NonProperStrand	5	4	-inf
chr17	39846826	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr17	30903616	30903743	protein_coding	Dnahc8	intron	ENSMUSG00000033826	NonProperStrand	32	1	-14.3847
chr2	177320932	177321022	LINE	L1Md_F	L1	chr2L1Md_F177320906	ProperStrand	12	chr2	177320814	177320930	LINE	L1VL1	L1	chr2L1VL1177316964	ProperStrand	14	4	-20.1394
chr12	74298872	74298889	protein_coding	Mnat1	intron	ENSMUSG00000021103	ProperStrand	9	chr5	123423799	123423897	protein_coding	Kdm2b	intron	ENSMUSG00000029475	NonProperStrand	97	1	-14.9478
chr6	85049278	85049378	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int85049252	ProperStrand	1	chr6	85049376	85049466	LTR	MTA_Mm	MaLR	chr6MTA_Mm85049370	ProperStrand	1	1	-inf
chr9	99303175	99303254	protein_coding	Mras	intron	ENSMUSG00000032470	NonProperStrand	12	chr8	106979578	106979647	protein_coding	Ccdc79	intron	ENSMUSG00000052616	NonProperStrand	63	1	-15.2157
chr11	7407796	7407886	LTR	RMER6D	ERVK	chr11RMER6D7407546	NonProperStrand	1	chr11	7407981	7408081	LTR	RMER6D	ERVK	chr11RMER6D7407915	NonProperStrand	1	1	-inf
chr9	31403521	31403621	SINE	PB1D10	Alu	chr9PB1D1031403542	ProperStrand	1	chr9	31402097	31403021	Simple_repeat	(TCTA)n	Simple_repeat	chr9(TCTA)n31401997	ProperStrand	1	1	-inf
chr6	51462617	51462671	SINE	B3A	B2	chr6B3A51462601	NonProperStrand	2	chr19	7374304	7374348	protein_coding	Mark2	intron	ENSMUSG00000024969	ProperStrand	26	1	-20.6107
chr5	31074689	31075162	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr5	53570809	53570825	protein_coding	Sel1l3	intron	ENSMUSG00000029189	ProperStrand	9	1	-13.6325
chr14	66269918	66269985	LTR	RLTR22_Mur	ERVK	chr14RLTR22_Mur66269830	NonProperStrand	1	chr17	39846786	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	70986898	70988476	protein_coding	Map4k5	intron	ENSMUSG00000034761	NonProperStrand	24	chr6	31147992	31148092	protein_coding	AB041803	intron	ENSMUSG00000044471	ProperStrand	114	1	-12.5894
chr16	11143903	11143950	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	chr5	34485761	34485861	protein_coding	Poln	intron	ENSMUSG00000045102	NonProperStrand	133	1	-7.4805
chr16	18086882	18086971	protein_coding	Prodh	intron	ENSMUSG00000003526	ProperStrand	57	chr8	121329693	121329711	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	1	-11.1603
chr2	29649231	29649259	protein_coding	Coq4	intron	ENSMUSG00000026798	ProperStrand	35	chr18	37674994	37675108	protein_coding	Pcdhb21	exon	ENSMUSG00000044022	ProperStrand	8	1	-17.2652
chr13	21716394	21716539	LINE	Lx7	L1	chr13Lx721715740	ProperStrand	9	chr17	39846807	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-6.1520
chr2	9917304	9917322	protein_coding	Taf3	intron	ENSMUSG00000025782	ProperStrand	59	chr17	56414596	56414730	protein_coding	Ticam1	intron	ENSMUSG00000047123	ProperStrand	23	1	-14.0022
chr3	97162184	97162284	LINE	Lx7	L1	chr3Lx797161997	NonProperStrand	1	chr3	97164472	97164562	LINE	Lx8	L1	chr3Lx897164123	NonProperStrand	2	1	-inf
chr5	146261001	146261193	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	56585097	56614172	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	2	-5.4452
chr13	29286942	29287032	protein_coding-noncoding	Cdkal1	utr3	ENSMUSG00000006191	NonProperStrand	3	chr13	29287073	29287173	protein_coding	Cdkal1	intron	ENSMUSG00000006191	NonProperStrand	21	3	-inf
chr5	65591956	65594484	protein_coding	Wdr19	intron	ENSMUSG00000037890	ProperStrand	17	chr5	65537333	65537407	protein_coding	Klhl5	intron	ENSMUSG00000054920	ProperStrand	40	1	-15.4085
chr6	141570928	141570948	LINE	L1Md_F2	L1	chr6L1Md_F2141565837	ProperStrand	7	chr6	141551722	141551833	LINE	L1_Mur3	L1	chr6L1_Mur3141550867	ProperStrand	3	3	-inf
chr17	39847214	39847250	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	92249970	92250067	protein_coding	1700057G04Rik	intron	ENSMUSG00000074139	NonProperStrand	2	1	-6.5615
chr15	10629025	10629149	protein_coding	Rai14	intron	ENSMUSG00000022246	ProperStrand	160	chr9	40229517	40229546	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-6.1345
chr2	39114804	39114904	LINE	Lx3B	L1	chr2Lx3B39114749	NonProperStrand	1	chr2	39114924	39115014	LINE	Lx5	L1	chr2Lx539114943	NonProperStrand	1	1	-inf
chr19	46425006	46425106	protein_coding	Tmem180	intron	ENSMUSG00000025227	ProperStrand	20	chr19	46401169	46424999	protein_coding	Psd	intron	ENSMUSG00000037126	NonProperStrand	6	1	-19.4109
chr14	31111246	31111269	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr13	77910473	77910592	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-9.4912
chr1	161036058	161036129	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.6300
chr12	4876463	4876553	protein_coding-noncoding	Mfsd2b	utr3	ENSMUSG00000037336	ProperStrand	2	chr12	4876342	4876442	protein_coding	Mfsd2b	exon	ENSMUSG00000037336	ProperStrand	16	1	-inf
chr11	55767589	55767689	antisense	Gm12239	.	ENSMUSG00000086020	NonProperStrand	10	chr11	54287745	54287835	protein_coding	Fnip1	intron	ENSMUSG00000035992	NonProperStrand	3	1	-20.3349
chr19	7034293	7034706	protein_coding	Plcb3	exon	ENSMUSG00000024960	ProperStrand	22	chr7	107599274	107599352	protein_coding	C2cd3	intron	ENSMUSG00000047248	ProperStrand	36	1	-15.1057
chr12	67665719	67665809	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr4	86643610	86643710	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	1	-9.4644
chr8	26413056	26413156	LTR	MTEb	MaLR	chr8MTEb26413076	NonProperStrand	1	chr15	7249134	7249224	protein_coding	Egflam	intron	ENSMUSG00000042961	ProperStrand	8	1	-inf
chr12	73333787	73333814	protein_coding	Rtn1	intron	ENSMUSG00000021087	NonProperStrand	36	chr13	44869593	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.4836
chr19	8723993	8724034	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr17	25634003	25634034	protein_coding	Sstr5	intron	ENSMUSG00000050824	NonProperStrand	3	1	-19.5762
chr4	109953226	109953316	protein_coding	Elavl4	intron	ENSMUSG00000028546	NonProperStrand	51	chr6	71874748	71874848	protein_coding	Polr1a	intron	ENSMUSG00000049553	ProperStrand	35	1	-13.4401
chr17	39846428	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	34335842	34335859	protein_coding-noncoding	Psmb8	utr5	ENSMUSG00000024338	NonProperStrand	2	1	-5.3533
chr11	63966490	63966506	SINE	B4	B4	chr11B463966266	ProperStrand	1	chr9	123461930	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr19	5796155	5796245	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr16	31813144	31813194	protein_coding	Dlg1	intron	ENSMUSG00000022770	ProperStrand	104	1	-3.4103
chr4	43492783	43492909	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-3.8099
chr11	88688989	88689046	SINE	B1F2	Alu	chr11B1F288689000	NonProperStrand	1	chr16	98063493	98063517	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	1	-inf
chr17	39846968	39846990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	132634107	132634124	protein_coding	Nsmce1	intron	ENSMUSG00000030750	ProperStrand	3	1	-4.3017
chr3	116749769	116749859	LTR	ORR1D2	MaLR	chr3ORR1D2116749703	NonProperStrand	1	chr3	116749437	116749537	LTR	RLTR18	ERVK	chr3RLTR18116749199	ProperStrand	2	1	-inf
chr17	39847174	39847219	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	30465994	30466012	LTR	ORR1A1	MaLR	chr3ORR1A130465977	ProperStrand	1	1	-inf
chr11	68903258	68903290	protein_coding	Vamp2	exon	ENSMUSG00000020894	ProperStrand	37	chr13	37983474	37985329	protein_coding	Rreb1	intron	ENSMUSG00000039087	NonProperStrand	39	1	-13.8720
chr19	14538934	14539031	protein_coding	Tle4	intron	ENSMUSG00000024642	ProperStrand	76	chr19	18687120	18687171	protein_coding	Ostf1	intron	ENSMUSG00000024725	NonProperStrand	53	1	-11.7968
chr7	101187222	101187312	LINE	L1MD	L1	chr7L1MD101187179	NonProperStrand	1	chr7	101187488	101187588	LINE	L1MD	L1	chr7L1MD101187507	NonProperStrand	1	1	-inf
chr17	78727446	78727485	protein_coding	Crim1	intron	ENSMUSG00000024074	NonProperStrand	26	chr5	32625790	32625865	protein_coding	Plb1	intron	ENSMUSG00000029134	ProperStrand	46	1	-14.2564
chr17	39846410	39846489	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	152280335	152280404	SINE	B3A	B2	chr2B3A152280311	NonProperStrand	1	1	-inf
chr11	94289934	94290001	protein_coding	Cacna1g	intron	ENSMUSG00000020866	ProperStrand	40	chr17	23810416	23810485	protein_coding	Thoc6	intron	ENSMUSG00000041319	NonProperStrand	57	1	-12.9457
chr6	40422378	40422455	protein_coding	Ssbp1	intron	ENSMUSG00000029911	NonProperStrand	3	chr6	40411133	40411197	protein_coding	Wee2	intron	ENSMUSG00000037159	NonProperStrand	8	1	-20.8155
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr11	48800450	48800476	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-3.9165
chr10	108238247	108238346	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	169	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.5690
chr5	146261003	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr12	105646757	105646856	protein_coding	Serpina3n	intron	ENSMUSG00000021091	NonProperStrand	9	1	-8.8915
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	132353254	132353363	SINE	ID_B1	B4	chr4ID_B1132353268	ProperStrand	5	1	-3.1907
chr11	77691587	77691637	LINE	L1MB2	L1	chr11L1MB277691350	NonProperStrand	1	chr11	33468546	33468612	protein_coding	Gabrp	intron	ENSMUSG00000020159	ProperStrand	24	1	-inf
chr7	114266531	114267123	LINE	L1Md_F2	L1	chr7L1Md_F2114262816	NonProperStrand	13	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-16.8837
chr11	94936278	94936296	protein_coding	Itga3	intron	ENSMUSG00000001507	ProperStrand	1	chr18	75368376	75368502	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-inf
chr11	109011752	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	38213404	38213420	protein_coding	Msx1	intron	ENSMUSG00000048450	NonProperStrand	1	1	-inf
chr3	40702658	40702758	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	NonProperStrand	16	chr4	147032977	147033067	protein_coding	2610305D13Rik	intron	ENSMUSG00000066000	NonProperStrand	8	2	-21.9131
chr2	17942319	17942380	LTR	RMER4A	ERVK	chr2RMER4A17942094	ProperStrand	2	chr2	17942642	17942723	SINE	B1_Mur3	Alu	chr2B1_Mur317942640	NonProperStrand	2	2	-inf
chr19	5797457	5797545	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr2	26926871	26926924	protein_coding	Tmem8c	intron	ENSMUSG00000009214	ProperStrand	5	1	-9.5162
chr14	114647472	114647562	LINE	Lx3B	L1	chr14Lx3B114647307	ProperStrand	1	chr14	114647741	114647841	LINE	Lx3B	L1	chr14Lx3B114647683	ProperStrand	1	1	-inf
chr17	39845946	39845974	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr6	27269106	27269124	protein_coding	Grm8	intron	ENSMUSG00000024211	NonProperStrand	26	1	-3.4481
chr1	168312151	168312181	protein_coding	Tada1	intron	ENSMUSG00000026563	NonProperStrand	6	chr5	147087198	147087329	protein_coding	Cdk8	intron	ENSMUSG00000029635	ProperStrand	81	1	-16.1935
chr4	155341403	155341493	LTR	MTD-int	MaLR	chr4MTD-int155341072	ProperStrand	3	chr4	155340982	155341082	SINE	B1_Mus2	Alu	chr4B1_Mus2155340970	NonProperStrand	2	1	-20.2824
chr14	62726786	62726876	LINE	L1Md_F2	L1	chr14L1Md_F262726110	ProperStrand	1	chr14	62725579	62725679	LTR	ORR1E	MaLR	chr14ORR1E62725525	NonProperStrand	2	1	-inf
chrX	13826869	13826995	LINE	L1_Mus1	L1	chrXL1_Mus113823901	NonProperStrand	1	chr8	52211201	52211230	LTR	RLTR13D6	ERVK	chr8RLTR13D652210412	NonProperStrand	1	1	-inf
chr17	39846567	39846602	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	30406807	30406927	LTR	RLTR10C	ERVK	chr6RLTR10C30406595	NonProperStrand	1	1	-inf
chr11	109509320	109509422	SINE	B3	B2	chr11B3109509342	NonProperStrand	1	chr11	109509196	109509286	SINE	B4A	B4	chr11B4A109509120	NonProperStrand	1	1	-inf
chr5	8619491	8619591	protein_coding	Rundc3b	intron	ENSMUSG00000040570	ProperStrand	11	chr1	168234565	168234655	protein_coding	Ildr2	intron	ENSMUSG00000040612	NonProperStrand	14	1	-18.3062
chr16	33047664	33047693	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr6	33638013	33638052	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	2	-13.5447
chr17	39847207	39847226	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	96699983	96700106	SINE	B4A	B4	chr7B4A96699989	ProperStrand	1	1	-inf
chr11	10434682	10434782	LINE	L1Md_A	L1	chr11L1Md_A10429313	ProperStrand	1	chr11	12354966	12355056	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-inf
chr12	93097145	93097245	LTR	MER90a	ERV1	chr12MER90a93097130	NonProperStrand	1	chr12	93096865	93096955	LTR	RMER15	ERVL	chr12RMER1593096567	NonProperStrand	1	1	-inf
chr17	39847562	39847636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	181233555	181233629	protein_coding	Tpd52l2	intron	ENSMUSG00000000827	ProperStrand	1	1	-inf
chr19	32907365	32907382	LINE	Lx4A	L1	chr19Lx4A32907362	ProperStrand	1	chr15	102111789	102111931	protein_coding	Mfsd5	exon	ENSMUSG00000045665	ProperStrand	11	1	-inf
chr5	134453798	134453845	SINE	RSINE1	B4	chr5RSINE1134453796	NonProperStrand	1	chr5	134454312	134454380	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n134454207	NonProperStrand	2	1	-inf
chr6	89955730	89955830	LTR	MMERVK10C-int	ERVK	chr6MMERVK10C-int89955657	NonProperStrand	1	chr6	89956103	89956193	LTR	MMERVK10C-int	ERVK	chr6MMERVK10C-int89956076	NonProperStrand	1	1	-inf
chr3	142265140	142265262	protein_coding	Gbp1	intron	ENSMUSG00000028269	NonProperStrand	9	chr4	94284267	94284286	protein_coding	Ift74	intron	ENSMUSG00000028576	ProperStrand	2	1	-20.8824
chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	72524147	72524225	protein_coding	Gabrb1	intron	ENSMUSG00000029212	NonProperStrand	14	1	-3.7266
chr2	32328424	32328500	SINE	B4	B4	chr2B432328360	ProperStrand	2	chr2	32328709	32328794	SINE	ID_B1	B4	chr2ID_B132328640	ProperStrand	2	2	-inf
chr1	172162249	172162304	LTR	MT2C_Mm	ERVL	chr1MT2C_Mm172162161	NonProperStrand	1	chr4	150316592	150316670	protein_coding	Tnfrsf9	intron	ENSMUSG00000028965	ProperStrand	158	1	-inf
chr17	39845283	39845319	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr15	36790926	36790972	LTR	MT2A	ERVL	chr15MT2A36790931	ProperStrand	1	1	-inf
chr11	107439383	107439481	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	chr16	36751881	36751897	protein_coding	Slc15a2	exon	ENSMUSG00000022899	NonProperStrand	15	1	-12.4273
chr17	39846753	39846832	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	134778904	134778970	SINE	B2_Mm2	B2	chr7B2_Mm2134778922	NonProperStrand	1	1	-inf
chr17	39847323	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	95974175	95975315	SINE	B1F2	Alu	chr11B1F295975275	NonProperStrand	3	1	-5.4882
chr9	37342585	37342685	protein_coding	Esam	intron	ENSMUSG00000001946	NonProperStrand	10	chr19	17208269	17208359	protein_coding	Prune2	intron	ENSMUSG00000039126	ProperStrand	33	1	-16.9089
chr15	98950569	98950659	Simple_repeat	(GGA)n	Simple_repeat	chr15(GGA)n98950564	NonProperStrand	6	chr15	98932001	98932101	protein_coding	Dnajc22	exon	ENSMUSG00000038009	NonProperStrand	43	6	-inf
chrX	94439582	94439604	LINE	L1_Mus3	L1	chrXL1_Mus394438092	ProperStrand	3	chr17	39847601	39847648	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr16	98063123	98063224	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	14	chr6	6980233	6980323	protein_coding	Acn9	intron	ENSMUSG00000042505	ProperStrand	10	1	-18.4132
chr10	39808227	39808288	protein_coding	Slc16a10	intron	ENSMUSG00000019838	NonProperStrand	28	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.4886
chr15	77153283	77153370	LINE	L1MA8	L1	chr15L1MA877153262	NonProperStrand	3	chr15	77153068	77153132	SINE	B1_Mus2	Alu	chr15B1_Mus277153061	NonProperStrand	2	1	-20.2824
chr6	13081894	13081951	LTR	MERVK26-int	ERVK	chr6MERVK26-int13081517	NonProperStrand	1	chr9	123462137	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	114288812	114307862	LTR	MLT1C	MaLR	chr13MLT1C114288798	NonProperStrand	2	chr13	114307871	114316927	SINE	ID_B1	B4	chr13ID_B1114316791	ProperStrand	9	2	-inf
chr11	30214300	30214411	LTR	MuRRS4-int	ERV1	chr11MuRRS4-int30213379	NonProperStrand	1	chr17	39846718	39846765	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	83008490	83008532	protein_coding	A230046K03Rik	intron	ENSMUSG00000034560	ProperStrand	68	chr5	23852208	23852260	protein_coding	Kcnh2	intron	ENSMUSG00000038319	NonProperStrand	16	1	-14.4604
chr18	38594015	38594101	protein_coding	Ndfip1	intron	ENSMUSG00000024425	NonProperStrand	104	chr13	97190541	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.0702
chr11	102259985	102260067	protein_coding	Rundc3a	intron	ENSMUSG00000006575	ProperStrand	3	chr3	9554787	9554857	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-12.8376
chr2	92479508	92479598	LTR	MTC	MaLR	chr2MTC92479344	NonProperStrand	1	chr2	14392272	14392372	protein_coding	Slc39a12	intron	ENSMUSG00000036949	NonProperStrand	7	1	-inf
chr17	39846464	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	80570195	80580866	LTR	RMER6C	ERVK	chr2RMER6C80569408	NonProperStrand	1	1	-inf
chr17	35384391	35384491	protein_coding	Ddx39b	intron	ENSMUSG00000019432	NonProperStrand	9	chr1	85213622	85213712	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	ProperStrand	6	1	-inf
chr8	94261357	94261439	SINE	PB1D10	Alu	chr8PB1D1094261348	ProperStrand	1	chr8	94262864	94262925	Simple_repeat	(TCTCCC)n	Simple_repeat	chr8(TCTCCC)n94262751	ProperStrand	4	1	-inf
chr8	45882896	45882996	LTR	ORR1E	MaLR	chr8ORR1E45882884	ProperStrand	1	chr8	45883507	45883597	SINE	B3	B2	chr8B345883474	NonProperStrand	1	1	-inf
chr12	71100941	71101031	LTR	MLT1D	MaLR	chr12MLT1D71100841	NonProperStrand	1	chr9	19657698	19657798	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr10	18618204	18618240	DNA	Tigger5	MER2_type	chr10Tigger518618122	NonProperStrand	1	chr17	39847127	39847204	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr1	52652089	52652199	LTR	MLT1B	MaLR	chr1MLT1B52651967	NonProperStrand	2	chr13	23571416	23571455	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	1	-20.3523
chr18	68324584	68324655	protein_coding	D18Ertd653e	intron	ENSMUSG00000024544	ProperStrand	95	chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-8.3834
chr1	118485754	118485841	LINE	L1Md_T	L1	chr1L1Md_T118485088	ProperStrand	2	chr1	118474177	118474238	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	1	-17.7992
chr19	16471943	16472043	LINE	L1MCa	L1	chr19L1MCa16471943	ProperStrand	3	chr19	16471816	16471906	SINE	B4	B4	chr19B416471747	ProperStrand	3	3	-inf
chr17	39847659	39847796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	140395882	140395903	protein_coding	Padi1	intron	ENSMUSG00000025329	NonProperStrand	1	1	-inf
chr15	84197044	84197086	DNA	MER63D	AcHobo	chr15MER63D84197043	ProperStrand	1	chr15	84199844	84200335	LINE	L1Md_F2	L1	chr15L1Md_F284199847	NonProperStrand	7	1	-inf
chr14	100079575	100079665	LINE	Lx7	L1	chr14Lx7100079580	NonProperStrand	1	chr14	100079461	100079561	LTR	MTE2b	MaLR	chr14MTE2b100079483	ProperStrand	1	1	-inf
chr17	39846602	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	30227619	30227702	SINE	PB1D9	Alu	chr11PB1D930227601	ProperStrand	1	1	-inf
chr1	34804897	34805027	protein_coding	Arhgef4	intron	ENSMUSG00000037509	ProperStrand	26	chr1	194306095	194306113	protein_coding	Kcnh1	intron	ENSMUSG00000058248	NonProperStrand	16	1	-16.4183
chr19	5797624	5797717	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr17	33817409	33817474	protein_coding	Hnrnpm	intron	ENSMUSG00000059208	NonProperStrand	92	1	-3.6355
chr1	157238392	157238492	protein_coding	Xpr1	intron	ENSMUSG00000026469	NonProperStrand	5	chr3	40478402	40478492	protein_coding	Intu	intron	ENSMUSG00000060798	ProperStrand	3	1	-inf
chrX	79354828	79354918	LINE	L1Md_F2	L1	chrXL1Md_F279353366	ProperStrand	2	chrX	79350481	79350581	LINE	L1_Mur1	L1	chrXL1_Mur179350371	NonProperStrand	1	1	-inf
chr13	62304274	62304423	LINE	Lx4B	L1	chr13Lx4B62304279	NonProperStrand	4	chr13	62304185	62304289	LTR	RMER12	ERVK	chr13RMER1262303887	NonProperStrand	5	4	-inf
chr11	70009789	70009889	LTR	RLTR28	ERVL	chr11RLTR2870009794	ProperStrand	2	chr11	70009691	70009781	SINE	ID_B1	B4	chr11ID_B170009580	ProperStrand	2	1	-19.8939
chr9	123462036	123462060	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	114671396	114671473	protein_coding	Cmtm7	intron	ENSMUSG00000032436	ProperStrand	11	1	-4.1956
chr11	69669706	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr16	16901043	16901124	protein_coding	Ppm1f	intron	ENSMUSG00000026181	ProperStrand	31	1	-10.3485
chr1	134075427	134075527	LTR	RLTR19-int	ERVK	chr1RLTR19-int134075271	ProperStrand	1	chr1	134075527	134075617	SINE	B2_Mm1t	B2	chr1B2_Mm1t134075528	ProperStrand	1	1	-inf
chr5	72793170	72793251	protein_coding	Corin	intron	ENSMUSG00000005220	ProperStrand	23	chr1	69684334	69684405	protein_coding	Ikzf2	intron	ENSMUSG00000025997	ProperStrand	19	1	-16.2700
chr7	14859179	14859279	LINE	Lx7	L1	chr7Lx714859022	ProperStrand	1	chr7	14859370	14859460	LINE	Lx7	L1	chr7Lx714859186	ProperStrand	1	1	-inf
chr2	165834900	165834965	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	chr10	61648678	61648743	protein_coding	Tspan15	utr3	ENSMUSG00000037031	NonProperStrand	51	1	-9.1526
chr11	118018516	118018582	protein_coding	Cyth1	intron	ENSMUSG00000017132	NonProperStrand	253	chr12	110692295	110692375	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-6.3348
chr3	26321224	26321240	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr4	140704101	140704214	protein_coding	Fbxo42	intron	ENSMUSG00000028920	ProperStrand	227	1	-11.3864
chr10	117098304	117098360	protein_coding	Cpm	intron	ENSMUSG00000020183	NonProperStrand	48	chr6	115839223	115839282	protein_coding	Ift122	intron	ENSMUSG00000030323	ProperStrand	9	1	-16.3681
chr17	4082172	4082215	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr4	137553299	137553605	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-3.6977
chr17	34951305	34951353	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr11	98027843	98028347	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	2	-14.7126
chr11	40720481	40720553	LINE	L1Md_T	L1	chr11L1Md_T40720399	ProperStrand	3	chr1	59710590	59710632	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	1	-18.4379
chr18	53494280	53494370	protein_coding	Snx24	intron	ENSMUSG00000024535	NonProperStrand	14	chr18	53519933	53520033	protein_coding	Snx24	intron	ENSMUSG00000024535	ProperStrand	4	1	-inf
chr11	108029566	108029585	protein_coding	Prkca	intron	ENSMUSG00000050965	ProperStrand	51	chr7	28949645	28949777	protein_coding	9530053A07Rik	utr3	ENSMUSG00000078776	NonProperStrand	96	1	-11.4053
chr17	39847181	39847226	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	155533403	155533489	LTR	IAP-d-int	ERVK	chr4IAP-d-int155531956	NonProperStrand	2	1	-6.5615
chr19	8967189	8968239	SINE	B1_Mus1	Alu	chr19B1_Mus18967124	NonProperStrand	2	chr19	8968240	8968306	protein_coding	Ints5	intron	ENSMUSG00000071652	ProperStrand	72	1	-19.3454
chr8	3521307	3521332	protein_coding	Pnpla6	exon	ENSMUSG00000004565	ProperStrand	27	chr4	132211437	132212003	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-12.4388
chr17	39846952	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	91928013	91928029	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	4	1	-3.6552
chr17	90032803	90032893	LTR	RLTR13D3	ERVK	chr17RLTR13D390032719	ProperStrand	1	chr17	90032932	90033032	LTR	RLTR13D3	ERVK	chr17RLTR13D390032913	ProperStrand	1	1	-inf
chr16	4960531	4960548	protein_coding	Anks3	exon	ENSMUSG00000022515	NonProperStrand	2	chr1	193003673	193003773	protein_coding	Atf3	intron	ENSMUSG00000026628	ProperStrand	4	1	-22.1285
chr15	82898390	82898480	LTR	MTE2a	MaLR	chr15MTE2a82898258	NonProperStrand	1	chr15	82898158	82898258	LTR	ORR1B1	MaLR	chr15ORR1B182897892	ProperStrand	2	1	-inf
chr15	40260324	40260414	LTR	MTEa-int	MaLR	chr15MTEa-int40260347	ProperStrand	1	chr15	40260660	40260760	LTR	MTEa-int	MaLR	chr15MTEa-int40260531	ProperStrand	1	1	-inf
chr11	86970215	86970264	protein_coding	Trim37	intron	ENSMUSG00000018548	NonProperStrand	72	chr18	37967888	37968222	protein_coding	Pcdhga9	exon	ENSMUSG00000023036	NonProperStrand	112	1	-10.4020
chr17	39847670	39847754	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	69867512	69867541	LTR	ORR1D1	MaLR	chr2ORR1D169867203	NonProperStrand	2	1	-5.4040
chr7	6062016	6062116	LINE	L1Md_F2	L1	chr7L1Md_F26062038	ProperStrand	1	chr7	6061772	6061862	LINE	L1VL1	L1	chr7L1VL16061713	ProperStrand	1	1	-inf
chr17	39847673	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	6355658	6355719	pseudogene	Gm11972	.	ENSMUSG00000084280	NonProperStrand	2	1	-5.4040
chr17	39846580	39846720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	49493467	49493486	protein_coding	Gpc4	intron	ENSMUSG00000031119	ProperStrand	4	1	-3.6552
chr17	39847611	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	103339510	103356210	protein_coding	Lrrc37a	intron	ENSMUSG00000078632	ProperStrand	12	2	-3.1700
chr10	122565825	122565915	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	chr4	11246105	11246205	protein_coding	Dpy19l4	intron	ENSMUSG00000045205	NonProperStrand	9	1	-17.0624
chr6	43997820	43997910	LTR	MT2A	ERVL	chr6MT2A43997794	NonProperStrand	2	chr6	43998050	43998149	Other	RMER1C	Other	chr6RMER1C43998009	NonProperStrand	2	2	-inf
chr11	23863958	23864027	LTR	MERVL-int	ERVL	chr11MERVL-int23863352	NonProperStrand	2	chr11	49670392	49670432	protein_coding	Mapk9	intron	ENSMUSG00000020366	NonProperStrand	20	1	-20.4416
chr17	39848153	39848194	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	36604380	36604499	protein_coding	Cd86	utr3	ENSMUSG00000022901	NonProperStrand	4	1	-6.6701
chr17	39846588	39846678	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	125278599	125281014	protein_coding	Scnn1a	intron	ENSMUSG00000030340	NonProperStrand	5	1	-3.1907
chr18	15720086	15720176	protein_coding	Chst9	intron	ENSMUSG00000047161	NonProperStrand	8	chr18	15656540	15656640	protein_coding	Chst9	intron	ENSMUSG00000047161	ProperStrand	13	1	-20.3570
chr6	47376374	47376464	LTR	RLTR13D4	ERVK	chr6RLTR13D447376036	ProperStrand	1	chr6	47375964	47376064	LTR	RLTR31_Mm	ERVK	chr6RLTR31_Mm47375837	ProperStrand	1	1	-inf
chr8	84762890	84762990	LINE	L1MB1	L1	chr8L1MB184762881	ProperStrand	2	chr8	84762688	84762778	LTR	MTD	MaLR	chr8MTD84762461	ProperStrand	1	1	-inf
chr19	5802063	5802105	lincRNA	Malat1	exon	ENSMUSG00000092341	NonProperStrand	13	chr19	7236631	7236675	protein_coding	Macrod1	intron	ENSMUSG00000036278	NonProperStrand	109	1	-13.9432
chr3	104501100	104501200	LINE	L1MDa	L1	chr3L1MDa104500979	NonProperStrand	2	chr3	104500834	104500924	SINE	PB1D10	Alu	chr3PB1D10104500822	NonProperStrand	1	1	-inf
chrX	74014998	74015088	LINE	L1VL1	L1	chrXL1VL174014520	ProperStrand	3	chr11	102876183	102876283	protein_coding	Dcakd	intron	ENSMUSG00000020935	ProperStrand	47	1	-18.8988
chr17	39847741	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	149474540	149485148	protein_coding	Gpr157	intron	ENSMUSG00000047875	NonProperStrand	1	1	-inf
chr9	114563551	114563651	SINE	B2_Mm2	B2	chr9B2_Mm2114563534	ProperStrand	2	chr9	114563256	114563346	SINE	B3A	B2	chr9B3A114563249	ProperStrand	12	2	-inf
chr19	10629329	10629429	protein_coding-noncoding	Tmem216	utr3	ENSMUSG00000024667	ProperStrand	1	chr19	10629608	10629698	protein_coding	Tmem216	utr5	ENSMUSG00000024667	ProperStrand	2	1	-inf
chr2	58273440	58273457	protein_coding	Acvr1	intron	ENSMUSG00000026836	NonProperStrand	6	chr15	73390138	73390230	protein_coding	Dennd3	intron	ENSMUSG00000036661	NonProperStrand	30	2	-inf
chrX	77600474	77600593	LINE	Lx9	L1	chrXLx977600431	NonProperStrand	1	chr17	39847846	39847865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	23739130	23739229	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int23738136	NonProperStrand	71	chr9	110281285	110281339	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.2277
chr13	44869574	44869645	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr6	128764163	128764224	protein_coding	Klrb1b	utr3	ENSMUSG00000079298	ProperStrand	5	1	-9.5722
chr10	123407773	123407863	LINE	L1Md_F2	L1	chr10L1Md_F2123406765	ProperStrand	1	chr10	123408301	123408401	LINE	L1_Mm	L1	chr10L1_Mm123407996	NonProperStrand	1	1	-inf
chr14	47481016	47481111	LINE	Lx	L1	chr14Lx47479950	NonProperStrand	1	chr9	123462145	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	20737477	20737566	LINE	L1MA4	L1	chr1L1MA420737481	ProperStrand	1	chr1	20737242	20737342	LINE	Lx9	L1	chr1Lx920737043	ProperStrand	1	1	-inf
chr13	97190561	97190582	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	69702812	69704301	protein_coding	Ssb	exon	ENSMUSG00000068882	NonProperStrand	8	1	-9.2031
chr17	39847561	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	45398312	45398376	LTR	MMETn-int	ERVK	chr4MMETn-int45396022	ProperStrand	5	1	-3.2379
chr8	33822084	33822150	LINE	L2a	L2	chr8L2a33822061	ProperStrand	3	chr8	33821930	33822006	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int33821513	ProperStrand	4	1	-inf
chr7	16364002	16364068	LINE	L1Md_F2	L1	chr7L1Md_F216363754	NonProperStrand	3	chr17	39846870	39847919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr1	63179075	63179138	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr15	10596965	10597060	protein_coding	Rai14	intron	ENSMUSG00000022246	ProperStrand	160	1	-9.6062
chr1	187274372	187274472	lincRNA	Gm2061	intron	ENSMUSG00000085692	NonProperStrand	18	chr14	61426648	61426738	protein_coding	Mipep	intron	ENSMUSG00000021993	NonProperStrand	22	1	-16.5131
chr7	107209576	107209608	LINE	L1MEc	L1	chr7L1MEc107209439	NonProperStrand	5	chr17	39847598	39847714	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	6939296	6939358	LTR	RMER16-int	ERVK	chr19RMER16-int6939264	ProperStrand	1	1	-inf
chr17	39846718	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	110393330	110393445	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110393129	NonProperStrand	4	1	-3.6552
chr8	84662721	84662775	LINE	Lx4A	L1	chr8Lx4A84662532	NonProperStrand	6	chr15	53255760	53255859	LTR	MER21B	ERV1	chr15MER21B53255785	ProperStrand	2	1	-inf
chr18	49854551	49854571	LTR	IAPEz-int	ERVK	chr18IAPEz-int49849314	NonProperStrand	4	chr9	42625822	42625933	protein_coding	Grik4	intron	ENSMUSG00000032017	ProperStrand	153	1	-15.8336
chr17	56172992	56173018	protein_coding	Sh3gl1	intron	ENSMUSG00000003200	NonProperStrand	12	chr1	52232947	52232963	protein_coding	Gls	intron	ENSMUSG00000026103	ProperStrand	27	1	-16.9416
chr13	9834306	9834405	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr8	105866563	105866653	SINE	B1F2	Alu	chr8B1F2105866588	ProperStrand	1	1	-inf
chr4	118531750	118531850	LINE	L1_Mus3	L1	chr4L1_Mus3118531755	ProperStrand	1	chr4	118531504	118531594	LTR	MTA_Mm	MaLR	chr4MTA_Mm118531360	NonProperStrand	1	1	-inf
chr6	122797040	122797130	SINE	B3	B2	chr6B3122796914	ProperStrand	1	chr6	122797216	122797316	protein_coding	C3ar1	utr3	ENSMUSG00000040552	NonProperStrand	1	1	-inf
mmu-miR-6240	2	26	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	chr6	124996753	124996786	protein_coding-noncoding	Ing4	utr5	ENSMUSG00000030330	ProperStrand	2	1	-21.2142
chr9	45126819	45126917	antisense	1700003G13Rik	.	ENSMUSG00000085831	NonProperStrand	2	chr1	39367908	39368167	protein_coding	Npas2	intron	ENSMUSG00000026077	ProperStrand	38	1	-20.3523
chr11	101645743	101645808	protein_coding-noncoding	Etv4	utr3	ENSMUSG00000017724	ProperStrand	1	chr1	72226328	72226368	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-inf
chr4	125482528	125482618	LINE	L1MB7	L1	chr4L1MB7125481980	NonProperStrand	1	chr4	125482806	125482906	SINE	B2_Mm2	B2	chr4B2_Mm2125482819	NonProperStrand	1	1	-inf
chr10	85182328	85182417	LTR	IAPEz-int	ERVK	chr10IAPEz-int85181430	NonProperStrand	1	chr17	39846812	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	136526831	136526865	SINE	B1_Mm	Alu	chr5B1_Mm136526737	NonProperStrand	2	chr5	136526495	136526611	SINE	B2_Mm2	B2	chr5B2_Mm2136526526	NonProperStrand	1	1	-inf
chr1	36207987	36208023	protein_coding	Uggt1	intron	ENSMUSG00000037470	ProperStrand	31	chr11	115536185	115536226	protein_coding	Grb2	intron	ENSMUSG00000059923	ProperStrand	75	1	-12.9094
chr19	5796622	5796652	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	64020389	64020492	protein_coding	Zwilch	intron	ENSMUSG00000032400	ProperStrand	48	1	-4.8681
chr5	136140646	136140746	LTR	RMER6D	ERVK	chr5RMER6D136140561	ProperStrand	2	chr5	136140453	136140543	SINE	B1_Mur4	Alu	chr5B1_Mur4136140427	ProperStrand	2	2	-inf
chr2	51453637	51453737	LTR	MTD	MaLR	chr2MTD51453638	NonProperStrand	1	chr2	51453551	51453641	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n51453567	ProperStrand	1	1	-inf
chr11	120597655	120597708	LTR	MTB-int	MaLR	chr11MTB-int120597654	ProperStrand	11	chr13	55213269	55213357	protein_coding	Zfp346	intron	ENSMUSG00000021481	ProperStrand	35	1	-16.5840
chr11	115644398	115644416	protein_coding	2310067B10Rik	intron	ENSMUSG00000020747	ProperStrand	1	chr9	123461882	123461906	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	93227670	93227760	LTR	RMER19B	ERVK	chrXRMER19B93226922	NonProperStrand	1	chrX	93228030	93228130	SINE	B1F	Alu	chrXB1F93228012	ProperStrand	1	1	-inf
chr11	73442446	73442536	LINE	L1Md_F3	L1	chr11L1Md_F373436494	NonProperStrand	1	chr11	73442882	73442982	LINE	L1VL1	L1	chr11L1VL173442851	NonProperStrand	1	1	-inf
chr2	166344984	166345074	DNA	MER44B	MER2_type	chr2MER44B166344861	ProperStrand	1	chr2	166345199	166345299	LTR	MTEb	MaLR	chr2MTEb166345091	ProperStrand	1	1	-inf
chr4	31731699	31731789	LTR	ORR1D1-int	MaLR	chr4ORR1D1-int31731638	NonProperStrand	1	chr4	31731299	31731399	LTR	ORR1D1	MaLR	chr4ORR1D131731216	NonProperStrand	1	1	-inf
chr17	39846410	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	137066674	137066704	protein_coding	Rerg	intron	ENSMUSG00000030222	NonProperStrand	3	1	-4.3017
chr10	82881758	82881858	LTR	IAPLTR2_Mm	ERVK	chr10IAPLTR2_Mm82881446	NonProperStrand	6	chr10	82879782	82881753	LTR	MT2_Mm	ERVL	chr10MT2_Mm82879479	ProperStrand	9	6	-inf
chr17	39847636	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	35123289	35123408	LTR	RMER19A	ERVK	chr17RMER19A35123019	NonProperStrand	4	2	-6.7714
chr17	39847331	39848093	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	102829372	102829460	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	23	-7.2685
chr9	118674950	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	2	-4.8309
chr17	39847491	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	30055260	30055344	SINE	ID_B1	B4	chr19ID_B130055225	NonProperStrand	1	1	-inf
chr1	171503046	171503070	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr10	127686737	127686827	protein_coding-noncoding	Timeless	utr5	ENSMUSG00000039994	ProperStrand	2	1	-19.9529
chr5	59897946	59898046	LTR	RLTR13D3	ERVK	chr5RLTR13D359897895	NonProperStrand	1	chr5	59897795	59897885	Low_complexity	GA-rich	Low_complexity	chr5GA-rich59897798	ProperStrand	1	1	-inf
chr19	37811519	37811609	SINE	B3A	B2	chr19B3A37811427	NonProperStrand	1	chr19	37811681	37811781	SINE	ID	ID	chr19ID37811689	NonProperStrand	1	1	-inf
chr3	27553614	27553694	protein_coding	Fndc3b	intron	ENSMUSG00000039286	ProperStrand	140	chr1	178203510	178203564	protein_coding	Pld5	intron	ENSMUSG00000055214	NonProperStrand	32	1	-11.5911
chr8	85275933	85276023	LTR	IAP-d-int	ERVK	chr8IAP-d-int85273704	NonProperStrand	1	chr8	85276145	85276245	LTR	IAP-d-int	ERVK	chr8IAP-d-int85276155	NonProperStrand	1	1	-inf
chr5	146260995	146261068	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	24508846	24508909	protein_coding	Pip5k1b	intron	ENSMUSG00000024867	ProperStrand	56	1	-5.1967
chr10	76709037	76709053	LTR	MLT-int	MaLR	chr10MLT-int76708907	ProperStrand	1	chr17	39846599	39846734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847194	39847214	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	68839997	68842053	protein_coding	1500010J02Rik	intron	ENSMUSG00000020898	NonProperStrand	6	1	-3.9545
chr3	146421897	146421969	protein_coding	Prkacb	intron	ENSMUSG00000005034	NonProperStrand	52	chr14	100282802	100282861	protein_coding	Klf12	intron	ENSMUSG00000072294	ProperStrand	41	1	-13.0810
chr5	124361690	124361792	protein_coding	Denr	intron	ENSMUSG00000023106	NonProperStrand	29	chr5	125337984	125338028	protein_coding	Ccdc92	intron	ENSMUSG00000037979	ProperStrand	54	1	-13.7050
chr9	43076256	43076356	LTR	RMER10B	ERVL	chr9RMER10B43076129	ProperStrand	2	chr9	43076347	43076437	Simple_repeat	(GGA)n	Simple_repeat	chr9(GGA)n43076327	NonProperStrand	2	2	-inf
chr11	11807073	11807169	LTR	MTC	MaLR	chr11MTC11807082	NonProperStrand	1	chr17	39847880	39847928	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	56701267	56701296	protein_coding	Safb2	utr3	ENSMUSG00000042625	NonProperStrand	49	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-9.5462
chr5	24402096	24402112	protein_coding	Prkag2	intron	ENSMUSG00000028944	ProperStrand	69	chr2	5379267	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.2817
chr8	91011451	91015194	LINE	L1M3e	L1	chr8L1M3e91014606	NonProperStrand	1	chr8	91011365	91011455	LTR	MTD	MaLR	chr8MTD91011270	ProperStrand	1	1	-inf
chr15	19861423	19861474	LTR	MTC-int	MaLR	chr15MTC-int19860998	NonProperStrand	1	chr17	39847688	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	4885884	4885949	SINE	PB1D7	Alu	chr11PB1D74885852	ProperStrand	1	chr19	60936373	60936434	protein_coding	Sfxn4	intron	ENSMUSG00000063698	NonProperStrand	3	1	-inf
chr17	39846464	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	61940955	61941051	protein_coding	Vps26a	intron	ENSMUSG00000020078	NonProperStrand	4	1	-3.6552
chr17	39843002	39843053	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr15	74410257	74410337	protein_coding	Bai1	intron	ENSMUSG00000034730	NonProperStrand	39	1	-6.2337
chr14	49751482	49751504	SINE	B2_Mm2	B2	chr14B2_Mm249751432	ProperStrand	1	chr7	30958034	30958122	protein_coding	Gm5113	intron	ENSMUSG00000066647	NonProperStrand	18	1	-inf
chr11	22996401	22996426	LTR	RLTR13C1	ERVK	chr11RLTR13C122995596	NonProperStrand	7	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.9733
chr4	40949947	40950047	protein_coding-noncoding	Nfx1	utr5	ENSMUSG00000028423	NonProperStrand	1	chr4	40950090	40950180	protein_coding	Nfx1	intron	ENSMUSG00000028423	NonProperStrand	22	1	-inf
chrX	105298580	105298638	LINE	L1Md_T	L1	chrXL1Md_T105296328	ProperStrand	1	chr17	39847160	39847247	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	64032119	64032140	LINE	L1Md_A	L1	chr2L1Md_A64032120	ProperStrand	1	chr9	123462082	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	112091085	112091185	LINE	Lx8	L1	chr10Lx8112090886	NonProperStrand	1	chr10	112091297	112091387	LINE	Lx8	L1	chr10Lx8112091246	NonProperStrand	1	1	-inf
chr16	26344788	26344888	LINE	Lx7	L1	chr16Lx726344565	ProperStrand	1	chr16	26344392	26344482	LTR	ORR1A2	MaLR	chr16ORR1A226344277	NonProperStrand	1	1	-inf
chr17	39846452	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	11655113	11655143	protein_coding	1700016D06Rik	utr3	ENSMUSG00000031509	NonProperStrand	2	2	-inf
chr10	83425584	83425638	SINE	B4A	B4	chr10B4A83425524	NonProperStrand	4	chr2	90395151	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-15.4057
chr12	6323399	6323417	LINE	Lx7	L1	chr12Lx76322652	ProperStrand	1	chr1	132638070	132638098	protein_coding	AA986860	intron	ENSMUSG00000042510	NonProperStrand	13	1	-inf
chr9	67910191	67911532	LINE	Lx	L1	chr9Lx67909521	ProperStrand	4	chr9	67911578	67912985	Simple_repeat	(CATATA)n	Simple_repeat	chr9(CATATA)n67912899	ProperStrand	3	3	-inf
chr13	23300141	23300197	LINE	L1_Mur2	L1	chr13L1_Mur223300101	ProperStrand	10	chr5	121426071	121426729	protein_coding	Rph3a	intron	ENSMUSG00000029608	NonProperStrand	86	1	-14.9654
chr9	123461819	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	145176651	145176709	protein_coding	Gm13212	intron	ENSMUSG00000078502	NonProperStrand	6	1	-5.4370
chr17	39843854	39847626	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	155893637	155893718	protein_coding	Spag4	intron	ENSMUSG00000038180	NonProperStrand	3	1	-9.1352
chr17	39847731	39847768	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	86837726	86837815	protein_coding	Aak1	intron	ENSMUSG00000057230	NonProperStrand	5	1	-3.2379
chr3	145924930	145925031	protein_coding	Lpar3	intron	ENSMUSG00000036832	ProperStrand	8	chr9	59665940	59668624	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	2	-16.5760
chr17	39847868	39847914	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	104283214	104283232	Unknown	MamRep605	Unknown	chrXMamRep605104283126	NonProperStrand	1	1	-inf
chr15	89428505	89428548	LINE	L1Md_F2	L1	chr15L1Md_F289428215	ProperStrand	2	chr10	79704552	79709701	protein_coding	Mum1	exon	ENSMUSG00000020156	ProperStrand	13	1	-inf
chr17	39846453	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	127981452	127981547	SINE	B3A	B2	chr7B3A127981351	NonProperStrand	7	2	-4.6854
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr4	43549120	43549383	protein_coding	Tln1	exon	ENSMUSG00000028465	ProperStrand	46	1	-10.8145
chr19	5364892	5364936	protein_coding	Banf1	utr3	ENSMUSG00000024844	ProperStrand	37	chr8	106642598	106642679	protein_coding	Cdh5	intron	ENSMUSG00000031871	ProperStrand	143	1	-11.2546
chr12	102604499	102604589	SINE	B3	B2	chr12B3102604393	ProperStrand	6	chr12	102604315	102604415	SINE	ID4_	ID	chr12ID4_102604314	NonProperStrand	1	1	-inf
chr4	85333938	85334047	lincRNA	Gm12680	intron	ENSMUSG00000087349	ProperStrand	49	chr6	49122382	49122417	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	ProperStrand	101	1	-11.3840
chr4	125119880	125119896	LTR	MLT1C	MaLR	chr4MLT1C125119728	NonProperStrand	1	chr13	44869571	44869639	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr14	56802562	56802629	LINE	Lx5	L1	chr14Lx556802387	ProperStrand	1	chr17	39846721	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	55675171	55675263	LINE	L1_Mur1	L1	chr17L1_Mur155674931	NonProperStrand	1	chr17	55675469	55675569	LINE	L1_Mur1	L1	chr17L1_Mur155675430	ProperStrand	1	1	-inf
chrX	161111912	161112012	DNA	URR1B	MER1_type	chrXURR1B161111923	NonProperStrand	1	chrX	161111607	161111697	LTR	ORR1B1	MaLR	chrXORR1B1161111596	NonProperStrand	1	1	-inf
chr2	38286261	38286324	lincRNA	Gm13589	intron	ENSMUSG00000085950	NonProperStrand	6	chr2	5379266	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr11	54023616	54023716	lincRNA	4933405E24Rik	intron	ENSMUSG00000086209	NonProperStrand	1	chr11	52677012	52677102	protein_coding	Fstl4	intron	ENSMUSG00000036264	ProperStrand	23	1	-inf
chr2	27422848	27422913	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n27422746	NonProperStrand	1	chr5	135888062	135888136	protein_coding	Hip1	intron	ENSMUSG00000039959	NonProperStrand	75	1	-inf
chr4	53860740	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr5	135911029	135911110	protein_coding	Hip1	utr3	ENSMUSG00000039959	ProperStrand	226	1	-6.7858
chr2	167065278	167065358	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr2	5878004	5882646	protein_coding	Upf2	exon	ENSMUSG00000043241	NonProperStrand	54	1	-11.6312
chr15	59547066	59547156	DNA	Charlie1a	MER1_type	chr15Charlie1a59547045	ProperStrand	1	chr15	59547216	59547316	LTR	RMER15	ERVL	chr15RMER1559547226	ProperStrand	1	1	-inf
chr17	25912048	25912138	protein_coding-noncoding	Narfl	utr5	ENSMUSG00000002280	NonProperStrand	2	chr17	25911955	25912055	protein_coding	Narfl	intron	ENSMUSG00000002280	NonProperStrand	17	2	-inf
chr3	71714198	71714225	Simple_repeat	(A)n	Simple_repeat	chr3(A)n71714147	NonProperStrand	1	chr12	78350926	78351051	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr4	10899205	10899221	LTR	MTD	MaLR	chr4MTD10899172	NonProperStrand	4	chr1	131573996	131574035	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-14.6459
chr5	45671824	45671886	LINE	Lx3_Mus	L1	chr5Lx3_Mus45671725	ProperStrand	1	chr19	46569363	46569421	SINE	B1_Mus2	Alu	chr19B1_Mus246569375	ProperStrand	1	1	-inf
chr2	6345355	6345455	protein_coding-noncoding	Usp6nl	utr5	ENSMUSG00000039046	ProperStrand	1	chr2	6345275	6345365	protein_coding	Usp6nl	intron	ENSMUSG00000039046	ProperStrand	45	1	-inf
chr8	120672890	120673332	LTR	MTA_Mm	MaLR	chr8MTA_Mm120673123	NonProperStrand	10	chr8	120672802	120673222	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n120672813	ProperStrand	8	3	-23.0413
chr6	88467643	88473143	SINE	B1_Mus1	Alu	chr6B1_Mus188473084	NonProperStrand	1	chr6	88467588	88467644	protein_coding	Sec61a1	intron	ENSMUSG00000030082	NonProperStrand	1	1	-inf
chr6	134161682	134161765	protein_coding	Etv6	intron	ENSMUSG00000030199	ProperStrand	187	chr18	66258069	66258136	protein_coding	Ccbe1	intron	ENSMUSG00000046318	ProperStrand	21	1	-11.8694
chr5	116574309	116574326	lincRNA	C330018A13Rik	intron	ENSMUSG00000086655	ProperStrand	1	chr13	36283526	36283640	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	1	-inf
chr5	109765655	109765745	protein_coding	Vmn2r16	intron	ENSMUSG00000092080	NonProperStrand	9	chr5	109771997	109772097	protein_coding	Vmn2r16	intron	ENSMUSG00000092080	ProperStrand	2	1	-20.8824
chr1	72311546	72311607	lincRNA	D230017M19Rik	exon	ENSMUSG00000085769	ProperStrand	23	chrX	162760700	162761636	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	1	-14.6450
chr2	5379284	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr1	79713930	79714917	protein_coding	Wdfy1	intron	ENSMUSG00000073643	ProperStrand	46	1	-5.0611
chr6	3201474	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	6703733	6703856	protein_coding	Celf2	intron	ENSMUSG00000002107	ProperStrand	39	1	-3.6804
chr17	39842999	39843089	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr14	79019764	79019864	protein_coding	Dgkh	intron	ENSMUSG00000034731	NonProperStrand	61	1	-5.3539
chr8	74299394	74299494	LINE	L1_Mus2	L1	chr8L1_Mus274299360	ProperStrand	2	chr8	74299273	74299363	LTR	ORR1A0	MaLR	chr8ORR1A074299014	ProperStrand	2	2	-inf
chr12	36107542	36107632	LINE	L1_Mus1	L1	chr12L1_Mus136107514	ProperStrand	9	chr12	36104338	36107533	LTR	ORR1D1	MaLR	chr12ORR1D136104122	ProperStrand	7	7	-inf
chr13	107353564	107353654	LINE	Lx5	L1	chr13Lx5107353073	NonProperStrand	1	chr16	98063107	98063207	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	1	-inf
chr2	179587675	179587696	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr16	18508786	18508914	protein_coding	Gnb1l	intron	ENSMUSG00000000884	ProperStrand	89	1	-9.8053
chr10	42223038	42223098	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	chr18	80856312	80856385	protein_coding	Nfatc1	intron	ENSMUSG00000033016	ProperStrand	40	1	-10.6809
chr5	115012742	115012768	LTR	RMER17B	ERVK	chr5RMER17B115012273	NonProperStrand	1	chr9	121857277	121857341	SINE	B3A	B2	chr9B3A121857206	ProperStrand	1	1	-inf
chr1	131153248	131153338	SINE	MIRb	MIR	chr1MIRb131153158	ProperStrand	1	chr9	123461902	123462002	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	157461221	157461272	LTR	ORR1B2	MaLR	chrXORR1B2157461026	ProperStrand	12	chr1	84723686	84723757	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	1	-13.8527
chr15	59468844	59468884	SINE	RSINE1	B4	chr15RSINE159468747	ProperStrand	1	chr2	91925530	91925603	lincRNA	Gm13780	intron	ENSMUSG00000087197	NonProperStrand	50	1	-inf
chr11	62537794	62537870	protein_coding	Zfp287	intron	ENSMUSG00000005267	ProperStrand	16	chr5	111179114	111179164	protein_coding	Ep400	intron	ENSMUSG00000029505	NonProperStrand	25	1	-16.5001
chr14	63150201	63150245	LTR	ORR1C2	MaLR	chr14ORR1C263150134	NonProperStrand	1	chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	118581671	118581768	protein_coding	A430105I19Rik	utr3	ENSMUSG00000045838	ProperStrand	4	chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	30	1	-19.3784
chr7	143065261	143065947	LINE	Lx5	L1	chr7Lx5143065059	NonProperStrand	6	chr9	40803177	40803272	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-12.1894
chr7	118815175	118815257	protein_coding	Galntl4	intron	ENSMUSG00000038296	NonProperStrand	80	chr2	5379267	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0024
chr17	28403082	28403172	protein_coding	Ppard	intron	ENSMUSG00000002250	NonProperStrand	104	chr17	27159680	27159780	protein_coding	Bak1	exon	ENSMUSG00000057789	ProperStrand	2	1	-18.3382
chr17	39847090	39847120	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	135381649	135381763	protein_coding	Wbscr28	intron	ENSMUSG00000040576	ProperStrand	9	1	-3.1539
chr3	54731942	54731999	DNA	Charlie2a	MER1_type	chr3Charlie2a54731736	NonProperStrand	2	chr3	54730113	54730149	LINE	L1MC3	L1	chr3L1MC354729862	ProperStrand	1	1	-inf
chr1	171127243	171127265	SINE	B4A	B4	chr1B4A171127088	ProperStrand	1	chr17	17528497	17528588	lincRNA	Gm16957	exon	ENSMUSG00000087696	ProperStrand	9	1	-inf
chr17	4082693	4082793	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr3	44264059	44264149	LINE	L1Md_T	L1	chr3L1Md_T44261223	ProperStrand	1	1	-inf
chr10	62856548	62856614	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	chr7	15949475	15949491	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	1	-13.5865
chr5	33532408	33532451	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr6	122728579	122728648	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-8.0081
chr5	135483218	135483270	SINE	PB1D10	Alu	chr5PB1D10135483173	NonProperStrand	1	chr5	135485423	135485504	protein_coding	Abhd11	utr5	ENSMUSG00000040532	NonProperStrand	1	1	-inf
chr5	107833869	107833929	antisense	Gm17202	.	ENSMUSG00000090558	ProperStrand	12	chr5	107833408	107833490	protein_coding	Ephx4	intron	ENSMUSG00000033805	NonProperStrand	2	1	-inf
chr1	87375020	87375051	LINE	L1Md_F2	L1	chr1L1Md_F287373564	ProperStrand	2	chrX	130462116	130462156	protein_coding	Srpx2	intron	ENSMUSG00000031253	ProperStrand	4	1	-22.1285
chr11	98234767	98234857	protein_coding-noncoding	Stard3	utr5	ENSMUSG00000018167	NonProperStrand	1	chr11	98234619	98234719	protein_coding	Stard3	intron	ENSMUSG00000018167	NonProperStrand	1	1	-inf
chr8	64797120	64797173	LINE	L1_Mur2	L1	chr8L1_Mur264796197	NonProperStrand	2	chr8	72985464	72985522	protein_coding	Klhl26	intron	ENSMUSG00000055707	ProperStrand	27	1	-21.9988
chr5	114386667	114386755	SINE	B2_Mm1a	B2	chr5B2_Mm1a114386646	NonProperStrand	2	chr8	61388062	61388111	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	2	-inf
chr17	39846944	39846974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	61564706	61564825	LTR	MTC-int	MaLR	chr18MTC-int61564706	NonProperStrand	2	1	-5.3533
chr1	4974854	4974911	protein_coding	Rgs20	intron	ENSMUSG00000002459	ProperStrand	8	chr9	123461883	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr2	132859871	132859904	Simple_repeat	(TCTCTG)n	Simple_repeat	chr2(TCTCTG)n132859797	ProperStrand	2	chr12	80650732	80650847	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	2	-inf
chr6	125186355	125186445	protein_coding-noncoding	Cd27	utr3	ENSMUSG00000030336	ProperStrand	80	chr6	114739784	114739884	protein_coding	Atg7	intron	ENSMUSG00000030314	ProperStrand	67	1	-11.2219
chr17	39847736	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	115123814	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	4	-3.9273
chr10	128490993	128492064	LINE	L1Md_F3	L1	chr10L1Md_F3128488776	ProperStrand	4	chr17	39846436	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr10	39370161	39395075	lincRNA	E130307A14Rik	intron	ENSMUSG00000087177	NonProperStrand	100	chr10	39369994	39370084	protein_coding	Traf3ip2	intron	ENSMUSG00000019842	ProperStrand	13	1	-14.1167
chr7	27965686	27965786	protein_coding-noncoding	Mia1	utr3	ENSMUSG00000089661	ProperStrand	3	chr7	27965825	27965915	protein_coding	Mia1	intron	ENSMUSG00000089661	ProperStrand	4	3	-inf
chr16	62013107	62013207	LINE	L1Md_F2	L1	chr16L1Md_F262010345	NonProperStrand	1	chr16	62013368	62013458	LINE	L1_Mus1	L1	chr16L1_Mus162013308	NonProperStrand	1	1	-inf
chr18	33795250	33795291	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	29	chr4	135607821	135607931	protein_coding	Rpl11	intron	ENSMUSG00000059291	ProperStrand	3	1	-20.0549
chr1	185424384	185428027	LINE	L1MEg	L1	chr1L1MEg185427860	NonProperStrand	8	chr6	33454198	33454288	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	2	-17.4110
chr7	80098847	80098914	LINE	L1Md_F2	L1	chr7L1Md_F280098790	NonProperStrand	7	chr16	58670919	58672553	protein_coding	Cpox	exon	ENSMUSG00000022742	ProperStrand	9	1	-20.6217
chr11	115942698	115945202	protein_coding-noncoding	Wbp2	utr3	ENSMUSG00000034341	NonProperStrand	11	chr11	115942778	115945315	protein_coding	Wbp2	intron	ENSMUSG00000034341	NonProperStrand	42	11	-inf
chr10	43385546	43385565	LTR	RMER20B	ERVK	chr10RMER20B43385505	NonProperStrand	1	chr16	13572064	13572163	protein_coding	Parn	intron	ENSMUSG00000022685	ProperStrand	65	1	-inf
chr8	22375638	22375678	LINE	L1VL1	L1	chr8L1VL122374742	NonProperStrand	2	chr11	73037618	73037891	protein_coding	Shpk	utr3	ENSMUSG00000005951	ProperStrand	22	1	-21.6660
chr6	142921582	142921672	LINE	L1MA6	L1	chr6L1MA6142921477	NonProperStrand	1	chr6	142922020	142922120	SINE	B4A	B4	chr6B4A142921903	NonProperStrand	1	1	-inf
chr6	51566266	51566333	LTR	ORR1D1	MaLR	chr6ORR1D151566098	ProperStrand	1	chr17	84771546	84772137	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	1	-inf
chr3	59194673	59194735	LINE	L1Md_F2	L1	chr3L1Md_F259194683	NonProperStrand	2	chr3	59196772	59196864	LINE	Lx2B	L1	chr3Lx2B59196546	NonProperStrand	2	2	-inf
chr14	27070162	27070262	LTR	RLTR1B	ERV1	chr14RLTR1B27070117	NonProperStrand	1	chr14	27070682	27070772	Simple_repeat	(TTCC)n	Simple_repeat	chr14(TTCC)n27070621	NonProperStrand	1	1	-inf
chrX	7937388	7937444	LINE	Lx6	L1	chrXLx67937241	NonProperStrand	1	chr17	39846940	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	34068147	34068175	protein_coding	Mtdh	intron	ENSMUSG00000022255	ProperStrand	2	chr5	114852005	114852023	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-16.7741
chr10	110767211	110774698	LINE	Lx7	L1	chr10Lx7110773919	NonProperStrand	1	chr2	31052487	31052531	protein_coding-noncoding	Gpr107	utr5	ENSMUSG00000000194	NonProperStrand	14	1	-inf
chr11	17159523	17192997	LTR	RLTR31_Mur	ERVK	chr11RLTR31_Mur17192851	NonProperStrand	1	chr11	17159435	17159525	protein_coding	C1d	intron	ENSMUSG00000000581	ProperStrand	6	1	-inf
chr12	104704843	104704951	LINE	L1Md_A	L1	chr12L1Md_A104700254	ProperStrand	9	chr1	66763623	66763669	protein_coding	Rpe	intron	ENSMUSG00000026005	ProperStrand	8	1	-20.4209
chr4	43492777	43492866	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr17	39843357	39843671	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	13	-6.6049
chr4	150242153	150244071	LINE	L2	L2	chr4L2150243950	NonProperStrand	21	chr17	39847338	39848020	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-3.0293
chr6	112921843	112921929	LTR	RLTR28	ERVL	chr6RLTR28112921648	ProperStrand	2	chr2	91825665	91825720	protein_coding	Creb3l1	intron	ENSMUSG00000027230	NonProperStrand	21	1	-20.6625
chr17	39846462	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	40751929	40757838	protein_coding	B4galt1	intron	ENSMUSG00000028413	ProperStrand	8	3	-6.6838
chr2	57998866	57998882	protein_coding	Cytip	intron	ENSMUSG00000026832	NonProperStrand	3	chr5	132854056	132854126	protein_coding	Auts2	intron	ENSMUSG00000029673	NonProperStrand	20	1	-23.6265
chr7	5409564	5409664	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	chr13	78070475	78070565	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-15.0546
chr14	65223890	65223915	Other	RMER1B	Other	chr14RMER1B65223838	ProperStrand	1	chr13	112578200	112578285	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr9	123461926	123461976	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	34512572	34512612	protein_coding	Nipal2	intron	ENSMUSG00000038879	NonProperStrand	22	2	-5.0561
chr10	41270284	41270384	protein_coding-noncoding	Ccdc162	utr3	ENSMUSG00000075225	ProperStrand	10	chr10	41270518	41270608	protein_coding	Ccdc162	exon	ENSMUSG00000075225	ProperStrand	32	1	-16.9081
chr5	30164029	30166692	LINE	L1VL4	L1	chr5L1VL430163921	NonProperStrand	1	chr17	39847168	39847213	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	95762497	95762550	protein_coding	B4galnt2	intron	ENSMUSG00000013418	NonProperStrand	47	chr15	59487072	59487157	protein_coding	Trib1	utr3	ENSMUSG00000032501	ProperStrand	15	1	-15.3330
chr9	75607776	75607802	LINE	L1_Mur2	L1	chr9L1_Mur275606720	NonProperStrand	1	chr12	79570664	79570765	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr11	107012893	107012939	SINE	B1_Mm	Alu	chr11B1_Mm107012792	NonProperStrand	7	chr2	132253139	132253178	lincRNA	4921508D12Rik	intron	ENSMUSG00000027345	NonProperStrand	28	1	-17.9911
chr9	114559929	114560027	LTR	MTC	MaLR	chr9MTC114559924	ProperStrand	5	chr9	114559820	114559929	SINE	B1_Mm	Alu	chr9B1_Mm114559777	ProperStrand	4	4	-inf
chr5	114852107	114852128	protein_coding	Ube3b	intron	ENSMUSG00000029577	NonProperStrand	10	chr13	44869950	44870016	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.0770
chr3	108675172	108675262	protein_coding	Fndc7	exon	ENSMUSG00000045326	NonProperStrand	10	chr5	145158420	145158520	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	1	-14.7892
chr11	88573727	88573762	protein_coding-noncoding	Msi2	utr3	ENSMUSG00000069769	ProperStrand	4	chr11	88573945	88574055	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-11.9104
chr17	39847338	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	116215101	116215122	protein_coding-noncoding	Rnf157	utr3	ENSMUSG00000052949	NonProperStrand	2	1	-5.4040
chr15	83236487	83236577	protein_coding	Pacsin2	intron	ENSMUSG00000016664	ProperStrand	107	chr15	83236371	83236471	pseudogene	Gm5417	.	ENSMUSG00000049414	ProperStrand	1	1	-inf
chr17	39847731	39847762	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	65322295	65322365	LTR	MTE2a	MaLR	chr7MTE2a65322232	ProperStrand	1	1	-inf
chr17	39843936	39843975	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr4	117031496	117031566	protein_coding	Rnf220	intron	ENSMUSG00000028677	NonProperStrand	93	1	-3.1794
chr3	136131427	136131444	LINE	L1Md_F2	L1	chr3L1Md_F2136127150	NonProperStrand	1	chr15	81077800	81077941	SINE	B4A	B4	chr15B4A81077690	NonProperStrand	1	1	-inf
chr1	33480491	33484732	LINE	L1M2	L1	chr1L1M233484194	ProperStrand	1	chr1	33484744	33512041	LINE	L1M2	L1	chr1L1M233484549	ProperStrand	1	1	-inf
chr17	39848203	39848276	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	132779495	132779573	protein_coding	Cd164l2	intron	ENSMUSG00000028865	ProperStrand	26	2	-5.0526
chr13	8981447	8981501	protein_coding	Gtpbp4	intron	ENSMUSG00000021149	ProperStrand	25	chr12	67665667	67665711	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-13.3476
chr17	39847668	39847734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	61938916	61938997	LTR	ORR1A1	MaLR	chrXORR1A161938647	ProperStrand	2	1	-5.4040
chr14	26921801	26921908	LTR	LTRIS_Mus	ERV1	chr14LTRIS_Mus26921730	NonProperStrand	2	chr4	141478999	141479044	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	1	-18.4079
chr17	39846415	39846487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	171102755	171102831	SINE	B3	B2	chr1B3171102605	ProperStrand	2	1	-5.3533
chr6	3201470	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	137310143	137310163	protein_coding	Alpl	intron	ENSMUSG00000028766	ProperStrand	39	1	-3.6804
chr10	98925178	98925280	LINE	Lx7	L1	chr10Lx798925058	NonProperStrand	2	chr10	98925364	98925400	SINE	MIR	MIR	chr10MIR98925315	NonProperStrand	2	2	-inf
chr13	40970392	40970482	protein_coding	Gcnt2	intron	ENSMUSG00000021360	NonProperStrand	11	chr4	33027278	33027378	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	2	-20.3396
chr8	87776307	87776397	LINE	L1_Rod	L1	chr8L1_Rod87776306	NonProperStrand	1	chr8	87776178	87776278	LTR	ORR1B1	MaLR	chr8ORR1B187776201	NonProperStrand	1	1	-inf
chr17	39846465	39846499	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	38427188	38427281	SINE	B4A	B4	chrXB4A38427122	ProperStrand	1	1	-inf
chrX	151314505	151314539	LINE	L1_Mus2	L1	chrXL1_Mus2151312851	NonProperStrand	1	chr12	80429972	80430075	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-inf
chr17	39847844	39847862	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	111169499	111169527	SINE	B1_Mur1	Alu	chr8B1_Mur1111169460	NonProperStrand	1	1	-inf
chr1	73815521	73815542	LINE	L1_Mus4	L1	chr1L1_Mus473815114	NonProperStrand	1	chr9	72291637	72291670	protein_coding	Mns1	intron	ENSMUSG00000032221	ProperStrand	8	1	-inf
chr9	123461957	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	11906089	11907411	protein_coding	Phf14	intron	ENSMUSG00000029629	NonProperStrand	12	2	-6.8720
chrX	74015056	74015115	LINE	L1VL1	L1	chrXL1VL174014520	ProperStrand	3	chr9	123461990	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr10	39750502	39750552	LTR	RMER15-int	ERVL	chr10RMER15-int39749872	NonProperStrand	4	chr17	39847658	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr15	43501373	43501486	SINE	B1_Mus1	Alu	chr15B1_Mus143501352	ProperStrand	1	chr14	57198567	57198583	protein_coding	Parp4	intron	ENSMUSG00000054509	ProperStrand	2	1	-inf
chr9	100858846	100858906	protein_coding	Stag1	utr3	ENSMUSG00000037286	ProperStrand	83	chr11	75389617	75389667	protein_coding	Slc43a2	utr3	ENSMUSG00000038178	ProperStrand	19	2	-19.9649
chr16	13944662	13944758	protein_coding	Mpv17l	intron	ENSMUSG00000022679	ProperStrand	42	chr4	55374248	55374275	protein_coding	Rad23b	intron	ENSMUSG00000028426	ProperStrand	31	1	-14.0799
chr17	39846593	39846657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	24664829	24664901	LTR	RLTR1B	ERV1	chr6RLTR1B24664464	ProperStrand	2	1	-5.3533
chr5	117135240	117135302	LINE	L1Md_F2	L1	chr5L1Md_F2117133062	NonProperStrand	4	chr10	127557486	127557540	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	148	1	-15.8889
chr8	33914349	33914461	LINE	L1Md_F2	L1	chr8L1Md_F233914338	NonProperStrand	7	chr5	146261259	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-15.8007
chr2	181325013	181325048	protein_coding	Znf512b	intron	ENSMUSG00000000823	NonProperStrand	6	chr9	123461920	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr12	38333083	38333173	LINE	L1Md_A	L1	chr12L1Md_A38329504	ProperStrand	2	chrX	134364103	134364203	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-17.7287
chr11	51601837	51601883	protein_coding	Sar1b	intron	ENSMUSG00000020386	NonProperStrand	109	chr13	58393715	58393855	protein_coding	Kif27	intron	ENSMUSG00000060176	ProperStrand	75	1	-10.3745
chr9	56892891	56892920	protein_coding	Ptpn9	intron	ENSMUSG00000032290	ProperStrand	4	chr2	144290627	144290646	pseudogene	Zfp133-ps	.	ENSMUSG00000083674	ProperStrand	1	1	-inf
chr1	165605105	165605195	LINE	Lx2B	L1	chr1Lx2B165605084	NonProperStrand	1	chr1	165605659	165605759	LTR	RLTR10	ERVK	chr1RLTR10165605569	NonProperStrand	1	1	-inf
chr9	8208116	8208216	LINE	L1_Mur3	L1	chr9L1_Mur38206707	ProperStrand	1	chr9	8208224	8208314	SINE	B2_Mm2	B2	chr9B2_Mm28208206	ProperStrand	1	1	-inf
chr9	105408479	105408539	protein_coding	Atp2c1	intron	ENSMUSG00000032570	ProperStrand	10	chr5	151160902	151160985	protein_coding	Fry	intron	ENSMUSG00000056602	NonProperStrand	23	1	-17.6114
chr14	57833960	57834060	LTR	ERVL-B4-int	ERVL	chr14ERVL-B4-int57833972	NonProperStrand	1	chr14	57834265	57834355	LTR	ORR1E	MaLR	chr14ORR1E57834236	ProperStrand	2	1	-inf
chr13	100463527	100463611	LINE	L1MA4A	L1	chr13L1MA4A100463321	ProperStrand	2	chr11	5333636	5333707	protein_coding	Znrf3	intron	ENSMUSG00000041961	ProperStrand	102	2	-inf
chrX	74270992	74271708	SINE	B4A	B4	chrXB4A74271543	ProperStrand	14	chr12	78351069	78351123	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	2	-14.1022
chr4	118623665	118624203	SINE	B1F2	Alu	chr4B1F2118624140	ProperStrand	2	chr4	118624197	118625661	Simple_repeat	(GAA)n	Simple_repeat	chr4(GAA)n118625509	ProperStrand	2	2	-inf
chr13	113615594	113615705	protein_coding	Ppap2a	intron	ENSMUSG00000021759	NonProperStrand	111	chr9	110281288	110281317	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-6.3434
chr17	39847531	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	6890285	6890372	LTR	RLTR23	ERV1	chr19RLTR236890277	ProperStrand	1	1	-inf
chr11	116143462	116144444	protein_coding	Galr2	exon	ENSMUSG00000020793	NonProperStrand	3	chr9	78480025	78480103	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-13.8660
chr4	91269412	91269512	LINE	Lx2B	L1	chr4Lx2B91269106	ProperStrand	1	chr4	91269568	91269658	LINE	Lx2B	L1	chr4Lx2B91269555	NonProperStrand	2	1	-inf
chr3	30634608	30636309	LINE	L1MB3	L1	chr3L1MB330635403	NonProperStrand	2	chr3	30642754	30642844	LINE	L1Md_F2	L1	chr3L1Md_F230642479	NonProperStrand	1	1	-inf
chr6	85947187	85947287	LTR	ORR1A4-int	MaLR	chr6ORR1A4-int85947027	NonProperStrand	2	chr4	144579419	144579509	protein_coding	Vps13d	intron	ENSMUSG00000020220	NonProperStrand	4	1	-22.1285
chr11	83495189	83495289	LINE	L1_Mus2	L1	chr11L1_Mus283495171	NonProperStrand	2	chr11	83495069	83495159	pseudogene	Gm11438	.	ENSMUSG00000083932	NonProperStrand	1	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr2	150768930	150769061	protein_coding	Ninl	intron	ENSMUSG00000068115	NonProperStrand	24	1	-9.6956
chr17	39847927	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	109541002	109541090	SINE	B1_Mus1	Alu	chr12B1_Mus1109540961	ProperStrand	2	1	-5.4040
chr7	57409207	57409255	protein_coding	Nell1	intron	ENSMUSG00000055409	NonProperStrand	17	chr1	37874246	37874308	protein_coding	Tsga10	intron	ENSMUSG00000060771	NonProperStrand	14	1	-17.4521
chr10	3995403	3995541	LINE	L1Md_F3	L1	chr10L1Md_F33990943	NonProperStrand	31	chr5	44456621	44456640	protein_coding	Prom1	intron	ENSMUSG00000029086	NonProperStrand	2	1	-20.3967
chr12	101955224	101955303	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	chr15	103294884	103294910	protein_coding	Nckap1l	intron	ENSMUSG00000022488	ProperStrand	25	1	-12.7886
chr17	39846125	39846174	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	69732383	69732456	LTR	ERVL-int	ERVL	chr3ERVL-int69730335	ProperStrand	1	1	-inf
chr6	100783163	100783263	SINE	ID_B1	B4	chr6ID_B1100783107	ProperStrand	1	chr6	100787325	100798181	protein_coding	Ppp4r2	intron	ENSMUSG00000052144	ProperStrand	1	1	-inf
chr9	14834558	14834589	protein_coding	Panx1	intron	ENSMUSG00000031934	NonProperStrand	29	chr4	11176290	11176380	protein_coding	Ints8	intron	ENSMUSG00000040738	NonProperStrand	55	2	-19.6463
chr17	39846582	39846684	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	13213054	13213070	SINE	B3	B2	chr10B313212984	NonProperStrand	1	1	-inf
chr3	135470216	135470265	LINE	L1_Mus1	L1	chr3L1_Mus1135468497	ProperStrand	2	chr17	39846394	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr7	27529811	27529901	LINE	L1_Mus1	L1	chr7L1_Mus127529703	ProperStrand	1	chr7	27529587	27529687	SINE	PB1D10	Alu	chr7PB1D1027529576	ProperStrand	1	1	-inf
chr9	123461801	123461892	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	155491694	155493882	protein_coding	9430015G10Rik	intron	ENSMUSG00000059939	ProperStrand	31	2	-4.1009
chr14	114388121	114388221	LINE	L1_Mur2	L1	chr14L1_Mur2114387880	NonProperStrand	1	chr14	114388287	114388377	LINE	L1_Mur2	L1	chr14L1_Mur2114388202	ProperStrand	1	1	-inf
chr7	143072377	143072472	LTR	RMER17B	ERVK	chr7RMER17B143071940	NonProperStrand	2	chr11	98806541	98806579	protein_coding	Rara	intron	ENSMUSG00000037992	ProperStrand	32	1	-19.8685
chr10	4062056	4062132	LINE	L1Md_T	L1	chr10L1Md_T4059793	ProperStrand	2	chr10	4081506	4081571	LTR	ORR1D1-int	MaLR	chr10ORR1D1-int4081487	NonProperStrand	1	1	-inf
chr5	115952597	115961181	SINE	B1_Mur1	Alu	chr5B1_Mur1115952573	ProperStrand	2	chr5	115967898	115967998	protein_coding	Pxn	intron	ENSMUSG00000029528	ProperStrand	36	2	-inf
chr4	57886544	57886625	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	chr11	107219841	107219918	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	3	-16.2887
chr8	48786686	48786705	LTR	RMER6C	ERVK	chr8RMER6C48786382	ProperStrand	1	chr11	65138685	65138773	lincRNA	Gm12295	intron	ENSMUSG00000085162	ProperStrand	128	1	-inf
chr17	39846750	39846844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	52926179	52926196	LTR	RodERV21-int	ERV1	chr19RodERV21-int52925329	ProperStrand	2	1	-5.3533
chr7	119875905	119876037	protein_coding	Tead1	intron	ENSMUSG00000055320	NonProperStrand	51	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.2281
chr17	39847529	39847831	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	106995495	106995601	SINE	B2_Mm1t	B2	chr11B2_Mm1t106995409	NonProperStrand	1	1	-inf
chr10	76531950	76533515	protein_coding	Col18a1	intron	ENSMUSG00000001435	NonProperStrand	68	chr16	10675301	10675386	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	1	-9.2502
chr14	91586311	91586401	LTR	RMER6C	ERVK	chr14RMER6C91586133	NonProperStrand	1	chr14	91586462	91586562	Simple_repeat	(TC)n	Simple_repeat	chr14(TC)n91586426	ProperStrand	1	1	-inf
chr15	72994498	72994599	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	chr10	63312452	63312542	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	5	-inf
chr8	95865212	95866937	LINE	L1Md_A	L1	chr8L1Md_A95865546	NonProperStrand	33	chr8	95865154	95866844	LINE	Lx5	L1	chr8Lx595864721	NonProperStrand	11	2	-inf
chr2	53171712	53171812	LINE	L1Md_F2	L1	chr2L1Md_F253171155	ProperStrand	1	chr4	11170826	11170916	protein_coding	Ints8	intron	ENSMUSG00000040738	NonProperStrand	55	1	-inf
chr1	38801175	38801265	LINE	L2a	L2	chr1L2a38801157	NonProperStrand	1	chr1	38800880	38800980	LTR	MLT2B4	ERVL	chr1MLT2B438800609	NonProperStrand	1	1	-inf
chr6	140517234	140517329	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	chr7	28894591	28894613	protein_coding	Fcgbp	intron	ENSMUSG00000047730	NonProperStrand	69	1	-9.2021
chr6	19366352	19366442	LINE	Lx7	L1	chr6Lx719366354	NonProperStrand	1	chr6	19366249	19366349	LINE	Lx8	L1	chr6Lx819366195	ProperStrand	1	1	-inf
chr14	19278161	19278197	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr3	97916091	97916187	protein_coding	Notch2	intron	ENSMUSG00000027878	ProperStrand	21	1	-13.6766
chr17	39847072	39847122	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	62415406	62415476	LTR	MTD	MaLR	chr4MTD62415396	NonProperStrand	1	1	-inf
chr2	3429336	3436461	protein_coding	Cdnf	intron	ENSMUSG00000039496	ProperStrand	4	chr2	3425368	3429310	protein_coding	Hspa14	intron	ENSMUSG00000079615	NonProperStrand	1	1	-inf
chr11	109011787	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	102829373	102829445	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-4.0348
chr3	103353957	103354036	SINE	B3A	B2	chr3B3A103353966	NonProperStrand	1	chr17	12919650	12919718	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	57	1	-inf
chr5	141698260	141698331	Simple_repeat	(TCCA)n	Simple_repeat	chr5(TCCA)n141698201	ProperStrand	2	chr17	35834963	35835044	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	1	-16.7631
chr17	39846414	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	156628104	156628133	LTR	RLTRETN_Mm	ERVK	chr2RLTRETN_Mm156627836	NonProperStrand	1	1	-inf
chr5	101928593	101928680	DNA	MER63A	AcHobo	chr5MER63A101928570	ProperStrand	1	chr17	39847611	39847654	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	38514506	38514581	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	chr7	13282506	13285280	protein_coding	Vmn2r56	intron	ENSMUSG00000090762	NonProperStrand	118	1	-8.6260
chrX	12061791	12061885	LTR	MTD	MaLR	chrXMTD12061486	ProperStrand	1	chrX	12066999	12067037	LTR	MTEb	MaLR	chrXMTEb12067004	NonProperStrand	1	1	-inf
chr7	81224320	81224410	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n81224270	ProperStrand	2	chr7	81224406	81224506	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n81224423	ProperStrand	2	2	-inf
chr15	50705568	50705672	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	chr15	66661778	66661801	protein_coding	Tg	intron	ENSMUSG00000053469	ProperStrand	17	1	-14.7608
chr17	39847551	39847585	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	145686742	145686845	lincRNA	Gm17565	exon	ENSMUSG00000090554	ProperStrand	1	1	-inf
chr2	3300080	3300148	LTR	MTEa	MaLR	chr2MTEa3299871	ProperStrand	1	chr2	91016613	91016693	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	1	-inf
chr13	23420039	23420100	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	NonProperStrand	29	chr11	100477272	100478019	protein_coding	Dnajc7	intron	ENSMUSG00000014195	ProperStrand	28	1	-15.0348
chr17	75183135	75183183	protein_coding	Ttc27	intron	ENSMUSG00000024078	ProperStrand	17	chr4	148571130	148571188	protein_coding	Kif1b	intron	ENSMUSG00000063077	NonProperStrand	70	1	-14.2766
chr11	88643680	88643764	LINE	L1ME2	L1	chr11L1ME288643619	NonProperStrand	2	chr11	109011646	109011706	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	2	-inf
chr13	44869896	44869943	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	101796838	101796912	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-3.2473
chr9	88520650	88520674	lincRNA	Gm17683	intron	ENSMUSG00000091564	NonProperStrand	40	chr5	114852004	114852026	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-10.1199
chr9	60285555	60285583	protein_coding	Thsd4	intron	ENSMUSG00000032289	ProperStrand	50	chr5	136006113	136006149	protein_coding	Hip1	intron	ENSMUSG00000039959	NonProperStrand	75	2	-18.7151
chr16	16647342	16647442	LINE	L1Md_F	L1	chr16L1Md_F16647057	ProperStrand	3	chr16	42757467	42757557	lincRNA	4932412D23Rik	intron	ENSMUSG00000075070	ProperStrand	10	1	-20.3377
chr17	39843355	39843484	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	24906116	24906145	processed_transcript	Gm11906	.	ENSMUSG00000085885	ProperStrand	15	1	-5.1667
chr11	109011741	109011769	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr6	39143795	39143883	protein_coding	Jhdm1d	intron	ENSMUSG00000042599	ProperStrand	22	1	-8.1069
chr5	111751197	111751287	LINE	Lx9	L1	chr5Lx9111751204	NonProperStrand	2	chr5	111751091	111751191	SINE	B2_Mm2	B2	chr5B2_Mm2111751117	NonProperStrand	2	2	-inf
chr11	113901595	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	chr10	28397640	28397742	protein_coding	Themis	intron	ENSMUSG00000049109	ProperStrand	49	1	-10.8626
chr16	15555247	15555347	protein_coding	Ube2v2	utr3	ENSMUSG00000022674	NonProperStrand	1	chr6	100606388	100606478	protein_coding	Shq1	intron	ENSMUSG00000035378	ProperStrand	53	1	-inf
chr17	39847535	39847593	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	62671939	62672012	SINE	B1_Mus2	Alu	chr13B1_Mus262671868	NonProperStrand	1	1	-inf
chr17	39847257	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	30845910	30846025	LTR	MTD	MaLR	chr1MTD30845913	ProperStrand	2	2	-inf
chr10	122014942	122014960	LTR	RLTR19	ERVK	chr10RLTR19122014661	ProperStrand	1	chr17	39847126	39847183	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	87266910	87268220	protein_coding	Ttll5	intron	ENSMUSG00000012609	ProperStrand	42	chrX	103244323	103244392	protein_coding	Atp7a	intron	ENSMUSG00000033792	NonProperStrand	68	1	-12.4912
chr7	144393036	144393120	protein_coding	Ebf3	intron	ENSMUSG00000010476	NonProperStrand	5	chr1	118455200	118455262	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	1	-15.6457
chr11	109011644	109011694	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	80441430	80441488	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-5.7413
chr18	19574906	19574996	LTR	LTRIS_Mus	ERV1	chr18LTRIS_Mus19574422	NonProperStrand	1	chr18	19575099	19575199	LTR	RLTR26	ERVK	chr18RLTR2619575021	NonProperStrand	1	1	-inf
chr8	48554966	48555001	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int48552575	NonProperStrand	9	chr8	48543722	48543809	SINE	B1_Mus1	Alu	chr8B1_Mus148543667	ProperStrand	2	2	-inf
chr3	73844951	73845041	LTR	MTEa	MaLR	chr3MTEa73844854	ProperStrand	1	chr3	73845087	73845187	LTR	MTEa	MaLR	chr3MTEa73845098	ProperStrand	1	1	-inf
chr14	12072454	12072509	Other	RMER1C	Other	chr14RMER1C12072455	NonProperStrand	1	chr13	97190561	97190611	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr11	87231719	87231737	protein_coding	Tex14	intron	ENSMUSG00000010342	ProperStrand	45	chr17	74257034	74257125	protein_coding	Xdh	intron	ENSMUSG00000024066	ProperStrand	20	1	-14.8338
chr2	131322035	131322061	protein_coding	Smox	intron	ENSMUSG00000027333	NonProperStrand	7	chr1	133604001	133604032	protein_coding	5430435G22Rik	intron	ENSMUSG00000052688	NonProperStrand	19	1	-18.4879
chr17	39847743	39847833	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	151820254	151820302	Low_complexity	A-rich	Low_complexity	chr1A-rich151820212	ProperStrand	1	1	-inf
chr3	8944629	8947485	protein_coding	Tpd52	exon	ENSMUSG00000027506	ProperStrand	278	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.5942
chr10	91121188	91121288	LINE	Lx8	L1	chr10Lx891120964	ProperStrand	3	chr17	39847552	39847608	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr11	30143019	30143049	protein_coding	Spnb2	intron	ENSMUSG00000020315	ProperStrand	88	chr2	5379304	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.8241
chr1	137352191	137352210	protein_coding	Nav1	intron	ENSMUSG00000009418	ProperStrand	6	chr10	69643749	69643878	protein_coding	Ccdc6	intron	ENSMUSG00000048701	ProperStrand	33	1	-18.1967
chr7	47188527	47188559	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr13	97190561	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.7172
chr13	69508783	69508920	LINE	Lx9	L1	chr13Lx969507868	NonProperStrand	2	chr11	102801156	102801173	lincRNA	Gm17536	intron	ENSMUSG00000091056	ProperStrand	10	2	-inf
chr14	59567183	59567266	LINE	L1Md_T	L1	chr14L1Md_T59566974	NonProperStrand	14	chr14	59573116	59573162	LINE	L1Md_T	L1	chr14L1Md_T59572161	NonProperStrand	6	2	-inf
chr17	39846453	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	30243295	30243363	SINE	ID4_	ID	chr11ID4_30243275	ProperStrand	1	1	-inf
chr10	128130629	128130728	protein_coding	Rab5b	intron	ENSMUSG00000000711	ProperStrand	6	chr12	82263796	82263816	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	1	-14.6332
chr11	22431591	22431691	LINE	Lx2	L1	chr11Lx222431222	ProperStrand	2	chr13	77797704	77797794	LINE	L1_Mus3	L1	chr13L1_Mus377797653	ProperStrand	3	2	-inf
chr11	121280002	121280092	LTR	ORR1B1	MaLR	chr11ORR1B1121279732	NonProperStrand	8	chr11	121280087	121280187	SINE	PB1D7	Alu	chr11PB1D7121280116	ProperStrand	7	7	-inf
chr11	81661260	81661281	protein_coding	Accn1	intron	ENSMUSG00000020704	NonProperStrand	24	chr12	80242977	80243117	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	2	-18.5055
chr17	20960955	20961585	LINE	L1_Mur3	L1	chr17L1_Mur320960782	ProperStrand	4	chr11	12300316	12300351	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-14.7289
chr17	39847341	39847384	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	38098745	38098790	SINE	B3	B2	chr7B338098695	NonProperStrand	1	1	-inf
chr17	34029944	34030173	LTR	ORR1A2	MaLR	chr17ORR1A234030045	NonProperStrand	4	chr17	34029687	34029935	LTR	RLTR42-int	ERVK	chr17RLTR42-int34029634	ProperStrand	14	2	-inf
chr9	17987811	17987834	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr2	144568666	144568727	protein_coding	Dtd1	intron	ENSMUSG00000027430	ProperStrand	26	1	-12.8346
chr13	112578191	112578242	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr12	99735366	99735456	protein_coding	Kcnk10	intron	ENSMUSG00000033854	ProperStrand	92	1	-3.4101
chr2	31673649	31673688	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	chr11	68973828	68973844	protein_coding	Alox12b	intron	ENSMUSG00000032807	ProperStrand	6	1	-15.0927
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	41314613	41314753	protein_coding	Ubap1	intron	ENSMUSG00000028437	NonProperStrand	9	2	-14.2802
chr4	74363892	74363997	LINE	L1Md_F2	L1	chr4L1Md_F274363311	ProperStrand	3	chr17	39847956	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr8	41374535	41374606	protein_coding	Fgf20	intron	ENSMUSG00000031603	ProperStrand	5	chr15	77118294	77118355	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	2	-21.6783
chr18	7807326	7807416	LINE	Lx5	L1	chr18Lx57806241	NonProperStrand	1	chr18	7815171	7815271	LTR	RLTR13D1	ERVK	chr18RLTR13D17815142	NonProperStrand	1	1	-inf
chr8	44952537	44952575	LINE	L1Md_F3	L1	chr8L1Md_F344951540	NonProperStrand	18	chr17	32141259	32141324	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	1	-13.3432
chr8	67422115	67422205	LINE	Lx8	L1	chr8Lx867422062	NonProperStrand	1	chr8	67421696	67421796	SINE	B1F1	Alu	chr8B1F167421713	NonProperStrand	1	1	-inf
chr9	65830009	65830025	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	ProperStrand	13	chr16	37880683	37880761	protein_coding	Lrrc58	intron	ENSMUSG00000034158	ProperStrand	33	1	-16.3791
chr17	39848600	39848644	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	71662494	71662551	protein_coding	Lzts1	exon	ENSMUSG00000036306	ProperStrand	27	1	-3.0710
chr19	20416047	20416147	LTR	RLTR11B	ERVK	chr19RLTR11B20415900	ProperStrand	1	chr19	36953008	36953098	protein_coding-noncoding	Tnks2	utr5	ENSMUSG00000024811	NonProperStrand	1	1	-inf
chr17	39844632	39844708	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr9	57760941	57761010	protein_coding	Ubl7	intron	ENSMUSG00000055720	NonProperStrand	22	1	-4.4268
chr17	39847277	39847354	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	23684201	23684348	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	NonProperStrand	15	2	-4.0614
chr6	140565503	140565672	SINE	ID_B1	B4	chr6ID_B1140565467	ProperStrand	7	chr6	140565660	140565786	Simple_repeat	(GGAGA)n	Simple_repeat	chr6(GGAGA)n140565680	ProperStrand	7	7	-inf
chr8	117289419	117289517	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr7	97720268	97720299	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-3.7896
chr8	24335802	24335885	LINE	Lx5	L1	chr8Lx524335776	ProperStrand	2	chr17	39847675	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chrX	74243001	74243101	DNA	RCHARR1	MER1_type	chrXRCHARR174242957	ProperStrand	3	chrX	74243157	74246145	LINE	L1Md_F2	L1	chrXL1Md_F274245839	NonProperStrand	7	2	-inf
chr17	39843477	39843575	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr17	33522814	33522843	protein_coding	Zfp101	utr3	ENSMUSG00000055240	ProperStrand	1	1	-inf
chr17	39848302	39848335	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	61842123	61842146	protein_coding	Hk1	intron	ENSMUSG00000037012	NonProperStrand	16	1	-3.7913
chr4	130719209	130719308	LTR	RMER6B	ERVK	chr4RMER6B130718931	NonProperStrand	2	chr9	123461822	123461870	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	42118511	42118601	LINE	L1_Mus1	L1	chr17L1_Mus142117483	NonProperStrand	1	chr17	67483834	67483934	protein_coding	Ptprm	intron	ENSMUSG00000033278	NonProperStrand	29	1	-inf
chr3	45334845	45334864	LTR	ORR1B2	MaLR	chr3ORR1B245334679	NonProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr2	109059905	109060005	protein_coding	Mettl15	intron	ENSMUSG00000057234	NonProperStrand	7	chr2	109031045	109031135	protein_coding	Mettl15	intron	ENSMUSG00000057234	ProperStrand	13	1	-20.2412
chr7	92588466	92588567	LINE	L1Md_A	L1	chr7L1Md_A92585697	ProperStrand	1	chr9	19657652	19657742	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr10	115303478	115303529	Low_complexity	GA-rich	Low_complexity	chr10GA-rich115303431	NonProperStrand	1	chr9	123461884	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	86887259	86887284	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n86887154	ProperStrand	1	chr6	125276699	125276813	protein_coding	Scnn1a	intron	ENSMUSG00000030340	ProperStrand	1	1	-inf
chr14	54369560	54369582	LINE	L1M2	L1	chr14L1M254369354	NonProperStrand	1	chr15	39583042	39583136	protein_coding	Dcstamp	intron	ENSMUSG00000022303	ProperStrand	6	1	-inf
chr17	31248834	31248855	protein_coding	Abcg1	intron	ENSMUSG00000024030	ProperStrand	3	chr9	123461945	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr10	42422731	42422821	LTR	ORR1A4-int	MaLR	chr10ORR1A4-int42422538	NonProperStrand	1	chr13	24732414	24732514	protein_coding	Fam65b	intron	ENSMUSG00000036006	NonProperStrand	42	1	-inf
chr7	97502887	97502959	protein_coding	Sytl2	intron	ENSMUSG00000030616	ProperStrand	31	chr11	33218849	33218933	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-8.7683
chr19	55771013	55771151	lincRNA	4930552P12Rik	intron	ENSMUSG00000085200	NonProperStrand	31	chr3	116595167	116603468	protein_coding	Frrs1	intron	ENSMUSG00000033386	ProperStrand	12	1	-16.6507
chr5	139306861	139306951	DNA	RCHARR1	MER1_type	chr5RCHARR1139306873	ProperStrand	1	chr5	139306797	139306897	SINE	B1_Mus2	Alu	chr5B1_Mus2139306733	ProperStrand	1	1	-inf
chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chr13	44869594	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.2822
chr12	80216684	80216784	LTR	IAPEz-int	ERVK	chr12IAPEz-int80216534	NonProperStrand	1	chr12	80216848	80216938	LTR	IAPEz-int	ERVK	chr12IAPEz-int80216811	NonProperStrand	1	1	-inf
chr12	14767592	14767682	LINE	L1_Mus1	L1	chr12L1_Mus114767195	NonProperStrand	1	chr12	14767822	14767922	LINE	L1_Mus1	L1	chr12L1_Mus114767743	ProperStrand	1	1	-inf
chr7	4743605	4743695	SINE	B1_Mus2	Alu	chr7B1_Mus24743542	NonProperStrand	2	chr7	4743386	4743486	SINE	B3A	B2	chr7B3A4743355	NonProperStrand	2	2	-inf
chr3	68543155	68543245	LTR	IAPEz-int	ERVK	chr3IAPEz-int68536806	ProperStrand	3	chr3	68543242	68543342	LTR	IAPLTR1_Mm	ERVK	chr3IAPLTR1_Mm68543221	ProperStrand	5	2	-inf
chr14	118700275	118700341	Other	RMER1A	Other	chr14RMER1A118699752	NonProperStrand	6	chr9	123461930	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr18	35554508	35554567	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr2	32216607	32216677	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	193	1	-6.0976
chr16	86389856	86389877	SINE	B3	B2	chr16B386389736	NonProperStrand	1	chr2	154872612	154872726	protein_coding	a	intron	ENSMUSG00000027596	NonProperStrand	26	1	-inf
chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chr9	21395386	21396055	protein_coding	Yipf2	intron	ENSMUSG00000032182	NonProperStrand	15	1	-14.6213
chr8	78110667	78110714	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	chr1	99651493	99651548	protein_coding	Ppip5k2	intron	ENSMUSG00000040648	NonProperStrand	2	1	-15.3898
chr11	120579686	120580006	protein_coding	Lrrc45	intron	ENSMUSG00000025145	NonProperStrand	47	chr16	19883802	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.3924
chr17	39848162	39848250	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	87996369	87996411	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int87996269	NonProperStrand	1	1	-inf
chr4	137617715	137617766	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr18	12984356	12985251	protein_coding	Osbpl1a	intron	ENSMUSG00000044252	NonProperStrand	72	1	-7.5728
chr11	120598320	120598364	LTR	RLTR26	ERVK	chr11RLTR26120597886	ProperStrand	2	chr9	123462076	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	17070503	17070593	LINE	L1_Mus1	L1	chr2L1_Mus117064639	ProperStrand	1	chr2	17070793	17070893	LINE	L1_Mus3	L1	chr2L1_Mus317070758	NonProperStrand	1	1	-inf
chr12	113067498	113067578	protein_coding	Ppp1r13b	utr3	ENSMUSG00000021285	NonProperStrand	48	chr19	8266189	8266210	protein_coding	Slc22a29	intron	ENSMUSG00000075044	NonProperStrand	4	1	-18.2691
chr11	87473151	87473192	SINE	ID4_	ID	chr11ID4_87473152	NonProperStrand	1	chr11	87434056	87434133	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-inf
chr2	130549718	130549803	protein_coding	4930402H24Rik	intron	ENSMUSG00000027309	NonProperStrand	40	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.2770
chr15	70398098	70398198	LINE	Lx3B	L1	chr15Lx3B70396865	ProperStrand	1	chr18	22362584	22362674	SINE	B3	B2	chr18B322362587	ProperStrand	1	1	-inf
chr9	110239986	110240015	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	24628598	24628617	protein_coding	Klhl32	intron	ENSMUSG00000040387	ProperStrand	26	1	-9.2456
chr7	92577484	92577574	LINE	L1_Mur1	L1	chr7L1_Mur192576062	NonProperStrand	3	chr7	92577685	92577785	LINE	L1_Mur1	L1	chr7L1_Mur192577510	NonProperStrand	3	3	-inf
chr1	130447068	130447147	LTR	MTD	MaLR	chr1MTD130447008	NonProperStrand	1	chr18	35402380	35402427	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	1	-inf
chrX	53026514	53026604	LTR	MERVL_2A-int	ERVL	chrXMERVL_2A-int53026381	ProperStrand	1	chrX	53026197	53026297	LTR	ORR1C2	MaLR	chrXORR1C253026160	NonProperStrand	1	1	-inf
chr9	54815056	54815122	SINE	B1_Mur2	Alu	chr9B1_Mur254815011	NonProperStrand	1	chr9	54814837	54814885	SINE	B3	B2	chr9B354814783	NonProperStrand	1	1	-inf
chr11	87426787	87426881	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr6	77245109	77245126	protein_coding	Ctnna2	intron	ENSMUSG00000063063	NonProperStrand	13	1	-14.9517
chr5	110415081	110415140	SINE	B2_Mm2	B2	chr5B2_Mm2110415070	NonProperStrand	1	chr12	111797178	111797257	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	ProperStrand	236	1	-inf
chr17	70963692	70963765	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chrX	162761443	162761513	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	1	-6.8682
chr2	166891882	166891899	SINE	B2_Mm2	B2	chr2B2_Mm2166891765	ProperStrand	1	chr17	24721132	24721228	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-inf
chrX	129768413	129768469	LINE	L1VL4	L1	chrXL1VL4129767686	NonProperStrand	4	chr17	39847821	39847867	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr4	84381739	84381806	DNA	Zaphod	Tip100	chr4Zaphod84381495	ProperStrand	1	chr17	39848619	39848704	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chr17	56825799	56825847	protein_coding	Ranbp3	intron	ENSMUSG00000002372	NonProperStrand	37	chr14	31000327	31000370	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	2	-15.9307
chrX	7850694	7850732	protein_coding	Slc38a5	intron	ENSMUSG00000031170	ProperStrand	6	chr19	37390696	37390721	protein_coding	Ide	intron	ENSMUSG00000056999	NonProperStrand	32	1	-18.0402
chr2	181681663	181681691	Unknown	MurSatRep1	Unknown	chr2MurSatRep1181681396	NonProperStrand	5	chr2	181682204	181682282	Unknown	MurSatRep1	Unknown	chr2MurSatRep1181682149	NonProperStrand	1	1	-inf
chr17	39847460	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	102041426	102041494	SINE	B2_Mm1t	B2	chr2B2_Mm1t102041319	NonProperStrand	1	1	-inf
chr15	12915343	12915425	LTR	MLT1B	MaLR	chr15MLT1B12915287	NonProperStrand	2	chr17	39847736	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr12	104790079	104790133	protein_coding	Ppp4r4	intron	ENSMUSG00000021209	NonProperStrand	63	chr18	37903847	37905037	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	1	-10.6704
chr4	123536219	123539820	antisense	1700121C08Rik	.	ENSMUSG00000086275	ProperStrand	23	chr4	123539819	123542527	protein_coding	4933427I04Rik	utr3	ENSMUSG00000073761	NonProperStrand	14	6	-19.6078
chr17	39846721	39846795	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	143898337	143898383	SINE	B1_Mus1	Alu	chr5B1_Mus1143898225	NonProperStrand	1	1	-inf
chr1	37760886	37760903	protein_coding	2010300C02Rik	intron	ENSMUSG00000026090	ProperStrand	13	chr7	30317367	30317493	protein_coding	4932431P20Rik	exon	ENSMUSG00000074224	ProperStrand	16	1	-17.9996
chr17	83353081	83353171	LINE	L1Md_A	L1	chr17L1Md_A83351722	NonProperStrand	1	chr17	83353200	83353300	LINE	L1Md_T	L1	chr17L1Md_T83353217	ProperStrand	2	1	-inf
chr1	119699208	119699244	Satellite	MMSAT4	Satellite	chr1MMSAT4119699133	NonProperStrand	1	chr9	15314843	15314911	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-inf
chr8	114775602	114775693	LINE	Lx7	L1	chr8Lx7114774922	NonProperStrand	10	chr8	114775765	114775865	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n114775741	ProperStrand	7	7	-inf
chr17	39847295	39847331	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	95129849	95130175	protein_coding	Setdb1	intron	ENSMUSG00000015697	ProperStrand	3	1	-5.4882
chr15	80246817	80246855	SINE	B4A	B4	chr15B4A80246809	NonProperStrand	1	chr13	97190569	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr7	126438635	126438652	SINE	B4A	B4	chr7B4A126438424	ProperStrand	14	chr13	28839693	28839816	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	1	-13.5130
chr6	88127110	88127210	LINE	L1M5	L1	chr6L1M588127080	ProperStrand	1	chr6	88126828	88126918	SINE	RSINE1	B4	chr6RSINE188126818	ProperStrand	1	1	-inf
chr2	173167550	173167650	LINE	Lx9	L1	chr2Lx9173166780	ProperStrand	1	chr2	173167720	173167810	SINE	B1_Mus1	Alu	chr2B1_Mus1173167658	NonProperStrand	1	1	-inf
chr7	27770586	27770696	LINE	L1Md_F2	L1	chr7L1Md_F227769712	ProperStrand	2	chr7	27771991	27772039	LTR	IAPEz-int	ERVK	chr7IAPEz-int27771824	ProperStrand	2	2	-inf
chr12	71204458	71204532	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	chr1	160768398	160768449	protein_coding	Pappa2	intron	ENSMUSG00000073530	ProperStrand	27	1	-13.4466
chr17	39847440	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	101222360	101222400	SINE	B2_Mm2	B2	chrXB2_Mm2101222266	ProperStrand	1	1	-inf
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr11	119285643	119285671	protein_coding	Rnf213	intron	ENSMUSG00000070327	ProperStrand	55	1	-6.7435
chr4	8568960	8568999	LTR	MTE-int	MaLR	chr4MTE-int8568889	ProperStrand	1	chr4	8567769	8567876	SINE	B2_Mm2	B2	chr4B2_Mm28567781	ProperStrand	1	1	-inf
chr12	56508417	56508517	protein_coding-noncoding	Psma6	utr5	ENSMUSG00000021024	ProperStrand	1	chr12	56508302	56508392	protein_coding	Psma6	intron	ENSMUSG00000021024	ProperStrand	3	1	-inf
chr17	34601155	34601219	LTR	MTA_Mm-int	MaLR	chr17MTA_Mm-int34601124	ProperStrand	2	chr19	5800950	5800981	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-11.8135
chr2	53286695	53286795	LINE	L1Md_F2	L1	chr2L1Md_F253286507	NonProperStrand	1	chr2	53303915	53304005	LINE	L1Md_F2	L1	chr2L1Md_F253302818	NonProperStrand	1	1	-inf
chr17	10284908	10285008	LTR	MTD-int	MaLR	chr17MTD-int10284718	ProperStrand	1	chr17	10284538	10284628	LTR	MTD	MaLR	chr17MTD10284329	ProperStrand	1	1	-inf
chr17	39847812	39847842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	29723768	29723853	protein_coding	4931440F15Rik	exon	ENSMUSG00000078157	NonProperStrand	1	1	-inf
chr6	79034498	79034598	LINE	L1Md_F2	L1	chr6L1Md_F279034452	ProperStrand	1	chr10	74715246	74715336	protein_coding	Specc1l	intron	ENSMUSG00000033444	NonProperStrand	9	1	-inf
chr19	47331595	47331695	protein_coding	Neurl1a	intron	ENSMUSG00000006435	NonProperStrand	150	chr19	47342432	47342522	protein_coding	Sh3pxd2a	exon	ENSMUSG00000053617	ProperStrand	170	2	-12.9154
chr6	117923802	117923922	LINE	L1MC1	L1	chr6L1MC1117923803	NonProperStrand	6	chr6	117919130	117923818	SINE	B2_Mm1t	B2	chr6B2_Mm1t117923609	NonProperStrand	9	6	-inf
chr2	25575455	25575471	LTR	RLTR6-int	ERV1	chr2RLTR6-int25575016	NonProperStrand	11	chr19	10610761	10611694	protein_coding	Cpsf7	intron	ENSMUSG00000034820	ProperStrand	82	1	-14.8649
chr1	195269061	195269151	DNA	Charlie1a	MER1_type	chr1Charlie1a195269054	ProperStrand	1	chr1	195269371	195269471	SINE	B3	B2	chr1B3195269379	NonProperStrand	1	1	-inf
chr9	100868643	100868674	LTR	RLTR42-int	ERVK	chr9RLTR42-int100868463	ProperStrand	1	chr19	5800606	5800670	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr15	74353842	74353932	protein_coding	Bai1	intron	ENSMUSG00000034730	NonProperStrand	39	chr15	53418615	53418715	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-9.2104
chr17	39846734	39846765	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	110362349	110362367	protein_coding	Csrp2	intron	ENSMUSG00000020186	NonProperStrand	1	1	-inf
chr18	45563295	45563365	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	chr4	101428740	101428786	protein_coding	Lepr	intron	ENSMUSG00000057722	ProperStrand	109	1	-11.7450
chr15	18932799	18932898	protein_coding	Cdh10	intron	ENSMUSG00000022321	ProperStrand	3	chr14	52098027	52103932	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-17.0662
chr11	88689377	88689498	SINE	B2_Mm1a	B2	chr11B2_Mm1a88689349	ProperStrand	1	chr3	84885766	84885786	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-inf
chrX	87238358	87238411	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr17	39847438	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	23	-4.6942
chr17	39847089	39847134	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	13450155	13450209	protein_coding	Maml2	intron	ENSMUSG00000031925	ProperStrand	6	1	-3.9545
chr11	30629958	30630058	LINE	L1_Mm	L1	chr11L1_Mm30629836	NonProperStrand	1	chr11	30629617	30629707	LINE	L1_Mur2	L1	chr11L1_Mur230629617	ProperStrand	1	1	-inf
chr17	39847557	39847621	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	33849540	33849631	LTR	MTD	MaLR	chr2MTD33849413	ProperStrand	1	1	-inf
chr9	45877074	45877164	protein_coding	Sik3	intron	ENSMUSG00000034135	NonProperStrand	65	chr4	45379125	45379225	protein_coding	Dcaf10	intron	ENSMUSG00000035572	NonProperStrand	18	1	-14.3122
chr6	32811390	32811503	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	chr12	90143343	90143363	protein_coding	Nrxn3	intron	ENSMUSG00000066392	ProperStrand	49	1	-9.9762
chr17	39847846	39847973	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	9943916	9943934	LTR	ORR1D1	MaLR	chrXORR1D19943587	NonProperStrand	1	1	-inf
chr15	12907329	12907346	LTR	ORR1B1	MaLR	chr15ORR1B112907003	ProperStrand	1	chr3	123507936	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	1	-inf
chr17	39846653	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	44094597	44094656	protein_coding	Rcan2	intron	ENSMUSG00000039601	NonProperStrand	5	1	-3.1907
chr2	87023534	87023552	LINE	Lx6	L1	chr2Lx687023508	NonProperStrand	1	chr13	113988048	113988161	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-inf
chr7	80345752	80345769	SINE	B1_Mur2	Alu	chr7B1_Mur280345721	ProperStrand	1	chr17	39843500	39843572	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr9	123461905	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	135212579	135231447	protein_coding	Manba	intron	ENSMUSG00000028164	ProperStrand	20	2	-5.3310
chr17	39846452	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	43507906	43507964	LTR	ORR1B1	MaLR	chr19ORR1B143507623	NonProperStrand	3	1	-4.3017
chr8	3535952	3536582	protein_coding	Pnpla6	exon	ENSMUSG00000004565	ProperStrand	27	chr13	44869573	44869612	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.0527
chr12	8916516	8916606	LTR	MTA_Mm-int	MaLR	chr12MTA_Mm-int8916497	NonProperStrand	6	chr12	8916345	8916445	LTR	MTA_Mm	MaLR	chr12MTA_Mm8916101	NonProperStrand	8	6	-inf
chr10	128023892	128026582	protein_coding	Erbb3	utr5	ENSMUSG00000018166	NonProperStrand	10	chr9	100852908	100852958	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	1	-15.0361
chr8	111711387	111712652	lincRNA	D030068K23Rik	intron	ENSMUSG00000085859	NonProperStrand	118	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.6569
chrX	79918466	79918484	LINE	L1Md_F2	L1	chrXL1Md_F279917686	NonProperStrand	4	chr1	72244269	72244399	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-17.0514
chr9	91449185	91449285	LINE	L1_Mus1	L1	chr9L1_Mus191449088	NonProperStrand	1	chr9	91448926	91449016	LTR	MTC	MaLR	chr9MTC91448912	NonProperStrand	1	1	-inf
chr17	39848140	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	60054777	60054853	protein_coding	March7	intron	ENSMUSG00000026977	NonProperStrand	14	1	-4.0485
chr4	34876144	34876234	Simple_repeat	(CATATA)n	Simple_repeat	chr4(CATATA)n34876109	ProperStrand	2	chr4	34876330	34876430	Simple_repeat	(CATATA)n	Simple_repeat	chr4(CATATA)n34876293	ProperStrand	1	1	-inf
chr2	5379270	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	140442991	140443068	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	81	1	-3.9791
chr2	61785441	61785475	LINE	L1_Rod	L1	chr2L1_Rod61784979	NonProperStrand	1	chr8	18855704	18855820	protein_coding	Agpat5	intron	ENSMUSG00000031467	ProperStrand	42	1	-inf
chr16	18925585	18925652	processed_transcript	Gm15797	.	ENSMUSG00000086059	ProperStrand	3	chr16	18922348	18922871	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	1	-17.1336
chr17	39846001	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	28096872	28096918	LTR	ORR1A4	MaLR	chr3ORR1A428096753	ProperStrand	2	1	-9.0607
chr18	53185557	53185641	LINE	L1Md_A	L1	chr18L1Md_A53180347	ProperStrand	2	chr1	181174733	181174806	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-17.5366
chr7	25082767	25082884	protein_coding	Zfp61	intron	ENSMUSG00000050605	NonProperStrand	13	chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-11.7400
chr4	147947041	147947131	protein_coding-noncoding	Exosc10	exon	ENSMUSG00000017264	ProperStrand	4	chr4	147947133	147947232	protein_coding	Exosc10	intron	ENSMUSG00000017264	ProperStrand	19	4	-inf
chr8	119529702	119529729	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	121	chr1	131296065	131296195	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-7.7694
chr1	127415123	127415184	Low_complexity	CT-rich	Low_complexity	chr1CT-rich127415067	ProperStrand	1	chr1	127415183	127415239	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n127415186	ProperStrand	1	1	-inf
chr13	9834303	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr6	149321723	149321756	LTR	MURVY-int	ERV1	chr6MURVY-int149321576	NonProperStrand	1	1	-inf
chr5	121145052	121145142	protein_coding-noncoding	Dtx1	utr3	ENSMUSG00000029603	ProperStrand	3	chr5	121144911	121145011	protein_coding	Dtx1	exon	ENSMUSG00000029603	ProperStrand	51	2	-inf
chr19	8996724	8999382	protein_coding	B3gat3	intron	ENSMUSG00000071649	ProperStrand	33	chr19	8990576	8990821	protein_coding	Ganab	utr3	ENSMUSG00000071650	ProperStrand	138	3	-21.6518
chr17	39847656	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	112901760	112901808	LTR	ORR1B1	MaLR	chr6ORR1B1112901608	ProperStrand	1	1	-inf
chr2	90395135	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr2	24760134	24760231	protein_coding	Ehmt1	intron	ENSMUSG00000036893	ProperStrand	27	1	-11.3351
chr1	55087628	55087702	SINE	B3	B2	chr1B355087609	ProperStrand	1	chr1	34181241	34181312	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-inf
chr17	39848161	39848224	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	85294896	85294949	protein_coding	Zfp330	intron	ENSMUSG00000031711	ProperStrand	6	1	-5.7734
chr3	121449966	121450066	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int121449808	ProperStrand	3	chr3	121426724	121426814	protein_coding	F3	intron	ENSMUSG00000028128	ProperStrand	45	3	-inf
chr19	8626236	8626253	LTR	RLTR8	ERVK	chr19RLTR88626145	ProperStrand	1	chr17	45569328	45569377	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-inf
chr2	154872641	154872714	protein_coding	a	intron	ENSMUSG00000027596	NonProperStrand	26	chr2	91017769	91017852	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	1	-12.7499
chr3	61920125	61920151	LINE	L1Md_T	L1	chr3L1Md_T61919369	NonProperStrand	1	chr1	172215498	172215514	protein_coding	Sh2d1b1	utr3	ENSMUSG00000026673	NonProperStrand	1	1	-inf
chr17	39847611	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	114462503	114462603	protein_coding	Dao	intron	ENSMUSG00000042096	ProperStrand	5	1	-3.2379
chr8	107052398	107052487	protein_coding-noncoding	Nae1	utr3	ENSMUSG00000031878	ProperStrand	1	chr8	107050163	107050200	protein_coding	Nae1	intron	ENSMUSG00000031878	ProperStrand	17	1	-inf
chr17	39847811	39847852	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	4165836	4165867	protein_coding	Carns1	exon	ENSMUSG00000075289	ProperStrand	1	1	-inf
chr11	50300246	50300293	Simple_repeat	(GA)n	Simple_repeat	chr11(GA)n50300223	NonProperStrand	1	chr11	119999920	119999957	protein_coding	Slc38a10	intron	ENSMUSG00000061306	NonProperStrand	60	1	-inf
chr13	53140791	53140889	LINE	L1Md_T	L1	chr13L1Md_T53137632	NonProperStrand	4	chr4	91336659	91336691	LINE	L1_Mus1	L1	chr4L1_Mus191336620	NonProperStrand	1	1	-inf
chr10	128039970	128040028	DNA	RCHARR1	MER1_type	chr10RCHARR1128039926	NonProperStrand	1	chr5	135523329	135523397	protein_coding	Stx1a	intron	ENSMUSG00000007207	NonProperStrand	6	1	-inf
chr9	37507386	37507476	Low_complexity	GA-rich	Low_complexity	chr9GA-rich37507395	ProperStrand	1	chr9	37507499	37507599	Other	RMER1C	Other	chr9RMER1C37507516	NonProperStrand	1	1	-inf
chr12	110616748	110616830	LTR	MLT1A0	MaLR	chr12MLT1A0110616583	ProperStrand	6	chr13	97190561	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr3	94886529	94886624	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	ProperStrand	13	chr15	44376669	44380092	protein_coding	Pkhd1l1	intron	ENSMUSG00000038725	NonProperStrand	20	1	-17.4329
chr16	32163353	32163371	protein_coding	Lrrc33	utr5	ENSMUSG00000052384	ProperStrand	7	chr12	80441437	80441490	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	72	1	-16.0883
chr12	17548375	17548424	SINE	B1_Mus2	Alu	chr12B1_Mus217548302	NonProperStrand	5	chr9	123461884	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39847734	39847752	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	35698673	35698704	SINE	B3	B2	chr18B335698606	ProperStrand	1	1	-inf
chr10	17124520	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr7	96314202	96314342	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-6.7044
chr2	22744848	22744886	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	102533204	102533232	protein_coding	Gm1564	intron	ENSMUSG00000051455	NonProperStrand	16	2	-15.0655
chr3	111883744	111883834	LINE	L1Md_A	L1	chr3L1Md_A111883639	ProperStrand	1	chr3	111883937	111884037	LINE	L1_Mus3	L1	chr3L1_Mus3111883800	ProperStrand	1	1	-inf
chr1	189850361	189850413	protein_coding	Esrrg	intron	ENSMUSG00000026610	ProperStrand	106	chr7	141402061	141402252	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-8.6349
chr10	11181525	11183784	LTR	MuRRS4-int	ERV1	chr10MuRRS4-int11181145	ProperStrand	2	chr10	11183785	11185323	LTR	MuRRS4-int	ERV1	chr10MuRRS4-int11183285	ProperStrand	2	2	-inf
chr17	39846430	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	121750235	121750251	LTR	ORR1A2	MaLR	chr9ORR1A2121749966	NonProperStrand	1	1	-inf
chr4	45397005	45397105	LTR	MMETn-int	ERVK	chr4MMETn-int45396022	NonProperStrand	2	chr4	116895284	116895374	protein_coding	Gm1661	intron	ENSMUSG00000060268	NonProperStrand	9	2	-inf
chr17	39847767	39847803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	102095906	102096007	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n102095844	ProperStrand	1	1	-inf
chr5	147526951	147526968	SINE	ID4	ID	chr5ID4147526942	ProperStrand	3	chr2	28919264	28919337	protein_coding	Ttf1	intron	ENSMUSG00000026803	ProperStrand	20	1	-23.6265
chr4	132309525	132310757	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	3	-9.2315
chrX	105926184	105926284	LINE	L1M4b	L1	chrXL1M4b105926169	ProperStrand	5	chrX	105926315	105926405	SINE	B3	B2	chrXB3105926329	ProperStrand	5	5	-inf
chr17	39846677	39846724	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	138187692	138190300	protein_coding	Tsc22d4	intron	ENSMUSG00000029723	ProperStrand	4	1	-3.6552
chr6	30293967	30294051	SINE	B2_Mm2	B2	chr6B2_Mm230293878	ProperStrand	1	chr13	44869574	44869628	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr2	5379307	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr2	166427176	166427202	protein_coding	Prex1	intron	ENSMUSG00000039621	ProperStrand	25	1	-6.2637
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr15	80082872	80082919	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	1	-3.0536
chr17	39847640	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	69566061	69590205	protein_coding	Ppig	utr3	ENSMUSG00000042133	NonProperStrand	4	2	-6.7714
chr1	151363434	151363452	LTR	IAPEz-int	ERVK	chr1IAPEz-int151361779	NonProperStrand	9	chr9	119247863	119247905	protein_coding	Myd88	intron	ENSMUSG00000032508	ProperStrand	7	1	-19.8944
chr5	33514321	33514421	SINE	B1_Mur1	Alu	chr5B1_Mur133514349	ProperStrand	3	chr5	33514429	33514519	SINE	B3	B2	chr5B333514428	NonProperStrand	2	2	-inf
chr1	156429179	156429269	protein_coding	Cacna1e	intron	ENSMUSG00000004110	ProperStrand	66	chr4	141074750	141074850	protein_coding	Spen	intron	ENSMUSG00000040761	NonProperStrand	2	1	-19.0429
chr7	119768747	119768824	lincRNA	2310014F06Rik	intron	ENSMUSG00000085945	ProperStrand	10	chr8	70333957	70334138	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-11.0621
chr2	5379272	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr18	10151085	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-5.5405
chr10	122080962	122080985	LINE	L1ME2	L1	chr10L1ME2122080610	ProperStrand	4	chr6	28798039	28798090	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-12.1862
chr10	80387577	80387680	LTR	MTA_Mm	MaLR	chr10MTA_Mm80387443	ProperStrand	1	chr10	80382478	80382520	SINE	B2_Mm2	B2	chr10B2_Mm280382452	NonProperStrand	1	1	-inf
chr8	45248663	45248756	LINE	L1Md_F3	L1	chr8L1Md_F345243637	NonProperStrand	6	chr7	50151417	50151440	LTR	MERVK26-int	ERVK	chr7MERVK26-int50151375	ProperStrand	1	1	-inf
chr15	81899174	81903518	LTR	RMER13B	ERVK	chr15RMER13B81898940	ProperStrand	1	chr15	81903521	81903621	protein_coding	Mei1	intron	ENSMUSG00000068117	ProperStrand	63	1	-inf
chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr2	155446577	155446702	protein_coding	Myh7b	intron	ENSMUSG00000074652	NonProperStrand	20	1	-8.1699
chr10	122566108	122566208	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr2	135032585	135032675	protein_coding	Plcb1	intron	ENSMUSG00000051177	ProperStrand	26	3	-inf
chr1	136878183	136878232	SINE	ID_B1	B4	chr1ID_B1136878123	NonProperStrand	1	chr9	123461965	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chrX	13293839	13293934	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-4.6826
chr9	121734175	121734211	antisense	Gm17163	.	ENSMUSG00000092042	ProperStrand	11	chr19	42107923	42107969	protein_coding	Ubtd1	intron	ENSMUSG00000025171	ProperStrand	6	1	-inf
chr2	71348295	71348404	protein_coding-noncoding	Metap1d	utr5	ENSMUSG00000041921	NonProperStrand	3	chr11	120347253	120347303	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	1	-17.5723
chr14	33320310	33320329	DNA	RMER30	MER1_type	chr14RMER3033320135	NonProperStrand	1	chr17	39846659	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	50420134	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr7	28352270	28352377	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-9.2461
chr2	102052039	102052074	SINE	B2_Mm1t	B2	chr2B2_Mm1t102051919	ProperStrand	1	chr11	101443665	101445289	protein_coding	Tmem106a	intron	ENSMUSG00000034947	ProperStrand	25	1	-inf
chr12	40398904	40399005	LINE	L1M3	L1	chr12L1M340398768	ProperStrand	1	chr12	40398683	40398773	LTR	ORR1E	MaLR	chr12ORR1E40398389	NonProperStrand	1	1	-inf
chr5	130243262	130243278	protein_coding	Gbas	intron	ENSMUSG00000029432	NonProperStrand	16	chr8	119921385	119921505	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-12.9390
chr7	98070990	98071006	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	chr5	118098323	118098449	protein_coding	Ksr2	intron	ENSMUSG00000061578	NonProperStrand	228	1	-6.9279
chr9	65201724	65201755	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr11	73083061	73083105	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-12.2045
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	chr2	62754630	62754647	protein_coding	Kcnh7	intron	ENSMUSG00000059742	NonProperStrand	29	1	-14.9611
chr17	45567925	45570677	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr9	123461821	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	10	-4.0489
chr17	39846995	39847027	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	4325741	4325800	protein_coding	Ccl25	intron	ENSMUSG00000023235	ProperStrand	4	1	-3.6552
chr11	75501423	75501816	protein_coding	Crk	intron	ENSMUSG00000017776	ProperStrand	72	chr15	74539204	74539237	protein_coding	Jrk	intron	ENSMUSG00000046380	NonProperStrand	1	1	-inf
chr11	97479910	97480000	lincRNA	2410003L11Rik	exon	ENSMUSG00000085860	ProperStrand	13	chr16	50229040	50229140	protein_coding	Bbx	intron	ENSMUSG00000022641	ProperStrand	76	1	-14.6711
chr2	152271713	152271736	LTR	MLT1A1	MaLR	chr2MLT1A1152271518	ProperStrand	1	chrX	95866708	95866824	protein_coding	Ophn1	intron	ENSMUSG00000031214	NonProperStrand	6	1	-inf
chr16	64702175	64702265	LINE	L1Md_F2	L1	chr16L1Md_F264701757	NonProperStrand	1	chr14	33967855	33967955	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-inf
chr12	110779322	110779420	lincRNA	Meg3	intron	ENSMUSG00000021268	ProperStrand	59	chrX	50592022	50592039	protein_coding	Plac1	intron	ENSMUSG00000061082	ProperStrand	82	1	-11.4283
chr8	72375615	72375673	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	chr12	67836449	67836528	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-10.1202
chr11	75536402	75536492	SINE	B1_Mur4	Alu	chr11B1_Mur475536344	NonProperStrand	6	chr11	75536497	75536597	SINE	ID4_	ID	chr11ID4_75536526	NonProperStrand	6	6	-inf
chr14	99949601	99949659	DNA	MER20	MER1_type	chr14MER2099949614	ProperStrand	1	chr5	146261160	146261218	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr8	91054388	91054488	protein_coding	Nkd1	intron	ENSMUSG00000031661	ProperStrand	33	chr18	63407146	63407236	protein_coding	Fam38b	intron	ENSMUSG00000041482	NonProperStrand	10	1	-16.9060
chr11	109011789	109011854	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	100228012	100232737	protein_coding	Slc11a2	utr3	ENSMUSG00000023030	NonProperStrand	35	1	-7.1707
chr7	133118153	133118203	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	chr10	11174251	11174343	protein_coding	Epm2a	intron	ENSMUSG00000055493	ProperStrand	13	2	-13.2433
chr2	167027727	167027902	antisense	Gm14291	.	ENSMUSG00000086098	ProperStrand	8	chr2	167026231	167027700	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-15.5549
chr16	47057473	47057490	LTR	MLT1D	MaLR	chr16MLT1D47057343	NonProperStrand	16	chr17	39846433	39846720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-3.8697
chr3	45891096	45891196	LINE	Lx2	L1	chr3Lx245891001	ProperStrand	2	chr3	45890770	45890860	SINE	B4A	B4	chr3B4A45890760	ProperStrand	1	1	-inf
chr3	41591838	41593781	LINE	L1Md_F2	L1	chr3L1Md_F241591321	ProperStrand	7	chr3	41593945	41593972	LINE	L1Md_F2	L1	chr3L1Md_F241593460	ProperStrand	28	1	-17.9911
chr17	39843706	39843765	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr13	24476352	24476401	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	1	-4.9585
chr1	116215711	116215800	LINE	L1Md_F2	L1	chr1L1Md_F2116215588	NonProperStrand	1	chr1	116215477	116215577	LINE	L1_Mm	L1	chr1L1_Mm116215466	ProperStrand	1	1	-inf
chr5	33526819	33526875	LINE	L1_Mm	L1	chr5L1_Mm33526514	NonProperStrand	36	chr2	102829380	102829446	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-10.9056
chr5	146261301	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	24807642	24808384	protein_coding	Mll3	intron	ENSMUSG00000038056	ProperStrand	134	1	-6.2841
chrX	101664677	101664728	DNA	MER44D	MER2_type	chrXMER44D101664677	ProperStrand	1	chrX	101663894	101663935	SINE	B1_Mus2	Alu	chrXB1_Mus2101663798	NonProperStrand	1	1	-inf
chr4	25265549	25267738	SINE	MIR	MIR	chr4MIR25265398	ProperStrand	2	chr4	25267732	25267822	SINE	MIRb	MIR	chr4MIRb25267662	ProperStrand	2	2	-inf
chr18	65023964	65024064	LINE	Lx8	L1	chr18Lx865023886	ProperStrand	6	chr18	65023810	65023900	SINE	B3	B2	chr18B365023699	NonProperStrand	6	6	-inf
chr8	117460242	117460298	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr11	94297136	94297804	protein_coding	Cacna1g	intron	ENSMUSG00000020866	ProperStrand	40	1	-6.9274
chr9	123462103	123462142	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	72806961	72807056	protein_coding	Kcmf1	intron	ENSMUSG00000055239	NonProperStrand	5	1	-5.8308
chr13	114108920	114108987	protein_coding	BC067074	exon	ENSMUSG00000021763	ProperStrand	92	chr1	131573996	131574034	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-8.1106
chr5	144129428	144134151	protein_coding	Grid2ip	intron	ENSMUSG00000010825	ProperStrand	61	chr1	181912181	181912243	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-8.0002
chr4	139197116	139198067	protein_coding-noncoding	Aldh4a1	utr5	ENSMUSG00000028737	ProperStrand	15	chr4	139193985	139198176	protein_coding	Aldh4a1	exon	ENSMUSG00000028737	ProperStrand	85	9	-21.3524
chr9	20616465	20616565	protein_coding	Col5a3	intron	ENSMUSG00000004098	NonProperStrand	8	chr4	44786137	44786227	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-15.2184
chr10	22067479	22067569	LTR	ETnERV-int	ERVK	chr10ETnERV-int22065981	ProperStrand	1	chr8	13837571	13837671	protein_coding	AF366264	exon	ENSMUSG00000057116	NonProperStrand	5	1	-inf
chr15	77180654	77180698	SINE	PB1D10	Alu	chr15PB1D1077180603	NonProperStrand	1	chr13	20951038	20951112	protein_coding	Aoah	intron	ENSMUSG00000021322	ProperStrand	24	1	-inf
chr9	110281293	110281323	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr4	99983895	99983987	protein_coding	Ror1	intron	ENSMUSG00000035305	ProperStrand	128	1	-6.0633
chr15	52578987	52579077	LINE	Lx9	L1	chr15Lx952578638	NonProperStrand	1	chr15	52579217	52579317	LINE	Lx9	L1	chr15Lx952579105	NonProperStrand	1	1	-inf
chr12	98727863	98727961	LINE	Lx7	L1	chr12Lx798727622	ProperStrand	2	chr17	39847271	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39846958	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	53339436	53339521	LTR	MLT1A0	MaLR	chr19MLT1A053339360	NonProperStrand	1	1	-inf
chr12	24587218	24587318	SINE	MIRb	MIR	chr12MIRb24587245	NonProperStrand	1	chr12	24587106	24587196	SINE	PB1D7	Alu	chr12PB1D724587129	ProperStrand	1	1	-inf
chr17	39848163	39848253	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	122715896	122715914	protein_coding	Trit1	intron	ENSMUSG00000028653	NonProperStrand	5	1	-6.1691
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	116674605	116674669	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	93	1	-5.9434
chr3	54728587	54728619	Low_complexity	AT_rich	Low_complexity	chr3AT_rich54728584	ProperStrand	1	chr8	122393556	122393584	protein_coding	Klhl36	exon	ENSMUSG00000031828	ProperStrand	25	1	-inf
chr16	90109717	90109797	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr10	19464149	19464167	protein_coding	Il20ra	intron	ENSMUSG00000020007	ProperStrand	4	1	-11.9629
chr17	39847028	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	108403611	108403629	protein_coding	Nutf2	utr3	ENSMUSG00000008450	NonProperStrand	2	1	-5.3533
chr11	49676985	49677086	protein_coding	Mapk9	intron	ENSMUSG00000020366	NonProperStrand	20	chr1	34188191	34188224	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-8.9971
chr5	146261009	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	84205751	84205775	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-3.2418
chr14	56777993	56778093	protein_coding	Gzmg	intron	ENSMUSG00000040284	ProperStrand	4	chr9	65201752	65201842	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-16.7526
chr4	35573729	35573829	LINE	L1Md_F2	L1	chr4L1Md_F235573655	NonProperStrand	1	chr4	35573146	35573236	LINE	Lx2	L1	chr4Lx235573085	ProperStrand	1	1	-inf
chr11	68141511	68141547	misc_RNA	AL662894.1	.	ENSMUSG00000093210	ProperStrand	1	chr11	68147014	68147060	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	1	-inf
chr17	39846480	39846513	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	93288017	93288081	protein_coding	Ilkap	intron	ENSMUSG00000026309	ProperStrand	1	1	-inf
chr10	75735019	75735126	protein_coding	Dip2a	intron	ENSMUSG00000020231	ProperStrand	98	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-5.6060
chr17	39843836	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr9	104152893	104152983	protein_coding	Dnajc13	intron	ENSMUSG00000032560	ProperStrand	36	1	-3.9193
chr4	55525641	55525741	LINE	L1_Mus2	L1	chr4L1_Mus255525655	NonProperStrand	1	chr5	142904551	142904641	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-inf
chrX	87238361	87238412	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr10	21055001	21055042	protein_coding	Hbs1l	intron	ENSMUSG00000019977	ProperStrand	12	1	-12.7645
chr4	64706253	64706343	LINE	Lx5	L1	chr4Lx564705515	ProperStrand	3	chr6	33282291	33282391	protein_coding	Exoc4	exon	ENSMUSG00000029763	ProperStrand	817	3	-inf
chr8	43169780	43169880	LINE	L1VL1	L1	chr8L1VL143169095	NonProperStrand	3	chr8	43169918	43170008	LINE	L1_Mus1	L1	chr8L1_Mus143169906	NonProperStrand	6	3	-inf
chr10	95991703	95991803	LINE	L1Md_F2	L1	chr10L1Md_F295991721	ProperStrand	3	chr10	95991621	95991713	LINE	Lx5	L1	chr10Lx595991229	NonProperStrand	3	3	-inf
chr14	9711212	9711233	LINE	L1Md_F2	L1	chr14L1Md_F29706188	ProperStrand	1	chr2	174280231	174280318	protein_coding	Tubb1	intron	ENSMUSG00000016255	NonProperStrand	27	1	-inf
chr10	18360800	18360916	protein_coding	D10Bwg1379e	intron	ENSMUSG00000019852	NonProperStrand	72	chr13	97190562	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.7699
chr1	34768445	34768483	processed_transcript	C230030N03Rik	.	ENSMUSG00000089955	ProperStrand	7	chr1	34786570	34786592	protein_coding	Arhgef4	intron	ENSMUSG00000037509	ProperStrand	26	1	-18.2314
chr2	170121617	170121717	LTR	ORR1A2	MaLR	chr2ORR1A2170121393	NonProperStrand	1	chr2	170121764	170121854	SINE	B3A	B2	chr2B3A170121724	NonProperStrand	1	1	-inf
chr17	39847562	39847627	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	130316524	130316599	sense_intronic	Gm12971	.	ENSMUSG00000087449	NonProperStrand	3	1	-4.3512
chr5	21441580	21441670	antisense	Gm10475	.	ENSMUSG00000073152	ProperStrand	30	chr5	21458343	21458443	protein_coding	Reln	intron	ENSMUSG00000042453	ProperStrand	45	1	-14.0064
chr11	90587568	90587646	LINE	Lx5	L1	chr11Lx590586880	ProperStrand	1	chr17	39847222	39847284	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr13	97190543	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr15	77238242	77238324	protein_coding	Apol9a	intron	ENSMUSG00000068246	ProperStrand	7	1	-9.4895
chr3	41604884	41604974	LINE	L1Md_F2	L1	chr3L1Md_F241604745	ProperStrand	11	chr3	41609824	41613126	LINE	L1_Mus1	L1	chr3L1_Mus141607357	ProperStrand	15	4	-21.1035
chr17	35510398	35510429	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	chr13	6619205	6619554	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	1	-6.5401
chr4	53860698	53860770	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr10	61323241	61323303	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-5.6911
chr10	105238442	105238521	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	chr2	5379281	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.1924
chr17	39847332	39847359	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	137470223	137470240	protein_coding	Plod3	intron	ENSMUSG00000004846	ProperStrand	2	2	-inf
chr3	136917743	136917843	LTR	RLTR40	ERVK	chr3RLTR40136917693	ProperStrand	1	chr3	136917593	136917683	SINE	B1_Mus2	Alu	chr3B1_Mus2136917546	NonProperStrand	1	1	-inf
chr9	13833781	13833852	LINE	L1Md_F2	L1	chr9L1Md_F213833142	NonProperStrand	1	chr17	39846759	39846789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	120078741	120078783	LINE	Lx3B	L1	chr1Lx3B120078173	ProperStrand	3	chr1	120079781	120079830	LINE	Lx3B	L1	chr1Lx3B120079328	ProperStrand	1	1	-inf
chr8	45024070	45024104	LINE	L1MA6	L1	chr8L1MA645023812	NonProperStrand	1	chr17	39847440	39847505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	99012486	99012576	protein_coding	Ccr7	intron	ENSMUSG00000037944	ProperStrand	29	chr2	152774688	152774788	protein_coding	Dusp15	intron	ENSMUSG00000042662	ProperStrand	3	1	-20.0549
chr9	25008497	25008597	SINE	B1_Mur3	Alu	chr9B1_Mur325008497	NonProperStrand	1	chr9	25008185	25008275	SINE	B4A	B4	chr9B4A25008189	ProperStrand	1	1	-inf
chr6	3201517	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	11778666	11778703	protein_coding	Gm97	intron	ENSMUSG00000055933	NonProperStrand	8	1	-6.8272
chr17	22436596	22436696	LINE	L1_Mus1	L1	chr17L1_Mus122434122	NonProperStrand	1	chr17	22436802	22436892	LTR	LTRIS2	ERV1	chr17LTRIS222436802	NonProperStrand	1	1	-inf
chr9	21587385	21587856	protein_coding	Kank2	intron	ENSMUSG00000032194	NonProperStrand	40	chr5	31176115	31176152	protein_coding	Tmem214	intron	ENSMUSG00000038828	NonProperStrand	29	1	-14.3136
chr18	9354146	9354208	protein_coding	Ccny	intron	ENSMUSG00000024286	ProperStrand	60	chr9	100547735	100547780	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	1	-11.3699
chr13	34186148	34186248	LTR	MT2B2	ERVL	chr13MT2B234186146	ProperStrand	1	chr13	34185956	34186046	SINE	B3A	B2	chr13B3A34185837	ProperStrand	1	1	-inf
chr4	41216292	41216330	protein_coding	Ubap2	intron	ENSMUSG00000028433	ProperStrand	81	chr13	35828281	35828326	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-7.8985
chr16	98061735	98061864	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	chr17	64881115	64881144	protein_coding	AU016765	intron	ENSMUSG00000073377	NonProperStrand	5	1	-17.2953
chr3	96270012	96270112	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr6	3201517	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-3.7789
chr17	39846656	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	65807541	65808413	protein_coding	Ugdh	intron	ENSMUSG00000029201	NonProperStrand	10	2	-3.6091
chr7	16428331	16428350	Simple_repeat	(TA)n	Simple_repeat	chr7(TA)n16428226	NonProperStrand	1	chr1	167250462	167250587	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	1	-inf
chr17	39846755	39846809	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	86020598	86020673	SINE	B2_Mm2	B2	chr3B2_Mm286020570	NonProperStrand	1	1	-inf
chr17	39847847	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	20658815	20658893	LTR	RMER13A	ERVK	chr9RMER13A20658628	ProperStrand	3	1	-4.3512
chr11	8657935	8658041	LINE	Lx4B	L1	chr11Lx4B8657590	NonProperStrand	3	chr17	39847763	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chrX	25786912	25787002	LINE	Lx7	L1	chrXLx725786521	ProperStrand	1	chrX	25787374	25787474	LTR	RMER3D-int	ERVK	chrXRMER3D-int25787363	ProperStrand	1	1	-inf
chrX	20678595	20678737	LINE	L1_Mm	L1	chrXL1_Mm20678267	NonProperStrand	10	chr17	39847341	39847830	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-5.7899
chr13	109860162	109860246	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr5	122880334	122880390	protein_coding	Anapc7	intron	ENSMUSG00000029466	NonProperStrand	20	1	-10.2000
chr4	50907628	50907728	LINE	L1Md_F2	L1	chr4L1Md_F250907572	NonProperStrand	1	chr4	50907799	50907889	LINE	L1_Mm	L1	chr4L1_Mm50907803	ProperStrand	1	1	-inf
chr2	126523574	126523674	LINE	L1_Mur3	L1	chr2L1_Mur3126523560	NonProperStrand	1	chr2	126523451	126523541	LINE	Lx7	L1	chr2Lx7126523031	NonProperStrand	1	1	-inf
chr10	78171600	78171618	Low_complexity	AT_rich	Low_complexity	chr10AT_rich78171571	NonProperStrand	1	chr4	5652926	5652954	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	1	-inf
chr17	39847212	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	100100676	100106574	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n100106502	ProperStrand	5	2	-7.5968
chr17	39847726	39847760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	63897128	63897249	SINE	B3	B2	chr5B363897058	ProperStrand	1	1	-inf
chr15	78667987	78668077	LTR	RMER17C	ERVK	chr15RMER17C78667869	ProperStrand	1	chr15	78668369	78668469	SINE	B1_Mus1	Alu	chr15B1_Mus178668391	ProperStrand	1	1	-inf
chr17	39847059	39848059	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	3200793	3201603	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1477	-inf
chrX	20289639	20289683	protein_coding-noncoding	Usp11	utr5	ENSMUSG00000031066	NonProperStrand	2	chrX	20285480	20285514	protein_coding	Usp11	intron	ENSMUSG00000031066	NonProperStrand	3	1	-20.8297
chr13	21896931	21896952	LINE	Lx8	L1	chr13Lx821896936	ProperStrand	3	chr5	88580958	88581043	LINE	L1Md_A	L1	chr5L1Md_A88574957	NonProperStrand	24	1	-20.7706
chr17	39843826	39843904	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	161460239	161460256	protein_coding	Ptprt	intron	ENSMUSG00000053141	NonProperStrand	55	1	-3.1364
chr14	30975804	30975823	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr8	72344791	72344884	protein_coding	Gmip	utr3	ENSMUSG00000036246	NonProperStrand	19	3	-20.3220
chr13	105913030	105913130	LINE	Lx8	L1	chr13Lx8105912966	NonProperStrand	1	chr7	103550797	103550887	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-inf
chr17	39847272	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	71294916	71294935	protein_coding	Abca12	exon	ENSMUSG00000050296	NonProperStrand	4	1	-4.8204
chr5	146261024	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	133527050	133527081	protein_coding	Dhdds	exon	ENSMUSG00000012117	ProperStrand	62	1	-4.9992
chr11	69744920	69745011	SINE	B1_Mur1	Alu	chr11B1_Mur169744857	NonProperStrand	8	chr17	50420126	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-14.0863
chr2	157792675	157792708	Other	RMER1B	Other	chr2RMER1B157792420	NonProperStrand	2	chr16	8788065	8788175	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	1	-16.1197
chr17	39842996	39843063	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr4	86478548	86478606	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-6.2853
chr13	29963097	29963172	SINE	B1_Mur1	Alu	chr13B1_Mur129963067	NonProperStrand	1	chr11	77057902	77057947	protein_coding	Ssh2	intron	ENSMUSG00000037926	NonProperStrand	17	1	-inf
chr3	19086123	19086223	LINE	L1MC3	L1	chr3L1MC319086097	NonProperStrand	1	chr3	19086237	19086327	SINE	B1_Mus1	Alu	chr3B1_Mus119086250	NonProperStrand	1	1	-inf
chr7	6560921	6561021	LINE	MusHAL1	L1	chr7MusHAL16560921	ProperStrand	2	chr7	6561049	6561139	LTR	IAPLTR3	ERVK	chr7IAPLTR36561011	NonProperStrand	2	2	-inf
chr16	88468601	88468658	LINE	L1_Mus1	L1	chr16L1_Mus188468463	ProperStrand	1	chr14	67917468	67917560	protein_coding	Ebf2	intron	ENSMUSG00000022053	NonProperStrand	40	1	-inf
chr19	29779471	29779571	protein_coding	Mlana	intron	ENSMUSG00000024806	NonProperStrand	3	chr10	62847276	62847366	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-17.5792
chr15	83412780	83412871	protein_coding	Ttll12	exon	ENSMUSG00000016757	ProperStrand	38	chr10	123117602	123117702	protein_coding	Fam19a2	intron	ENSMUSG00000044071	NonProperStrand	176	1	-10.7847
chr17	84262332	84262367	SINE	B3A	B2	chr17B3A84262228	NonProperStrand	2	chr4	107027448	107027493	protein_coding	Yipf1	intron	ENSMUSG00000057375	ProperStrand	174	1	-17.3408
chr15	6026825	6026893	LINE	L1_Mus3	L1	chr15L1_Mus36026697	ProperStrand	1	chr15	6027491	6027572	SINE	B4	B4	chr15B46027254	NonProperStrand	1	1	-inf
chr12	47352841	47352931	LINE	L1_Mm	L1	chr12L1_Mm47352810	NonProperStrand	1	chr12	47352410	47352510	LINE	L1_Mus1	L1	chr12L1_Mus147352433	NonProperStrand	1	1	-inf
chr4	53860703	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	3	-7.0317
chr13	63701877	63701967	DNA	MER106A	MER1_type	chr13MER106A63701765	ProperStrand	1	chr13	63702198	63702298	LTR	LTR37B	ERV1	chr13LTR37B63702129	NonProperStrand	1	1	-inf
chr3	119907964	119908064	LINE	L1Md_F2	L1	chr3L1Md_F2119907728	ProperStrand	1	chr3	119908282	119908372	LINE	L1Md_F2	L1	chr3L1Md_F2119908260	NonProperStrand	1	1	-inf
chr3	136745661	136745748	LINE	Lx2	L1	chr3Lx2136744601	NonProperStrand	2	chr17	39847636	39847670	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr12	111296766	111296857	LINE	Lx8	L1	chr12Lx8111296385	NonProperStrand	2	chr12	111298616	111298668	SINE	PB1D10	Alu	chr12PB1D10111298559	NonProperStrand	1	1	-inf
chr8	87725770	87725867	LINE	L1_Mus3	L1	chr8L1_Mus387724608	NonProperStrand	4	chr8	87701968	87702014	LTR	IAPEY3-int	ERVK	chr8IAPEY3-int87701797	ProperStrand	3	2	-inf
chr6	119377022	119377098	SINE	B1F	Alu	chr6B1F119377003	ProperStrand	1	chr6	119417211	119417249	protein_coding	Wnt5b	utr5	ENSMUSG00000030170	ProperStrand	60	1	-inf
chr19	25564891	25564981	LTR	ORR1C2	MaLR	chr19ORR1C225564843	NonProperStrand	1	chr19	25564545	25564645	Simple_repeat	(TA)n	Simple_repeat	chr19(TA)n25564563	ProperStrand	1	1	-inf
chrX	8279807	8279838	LINE	Lx4B	L1	chrXLx4B8279621	NonProperStrand	1	chr17	39847623	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	83398302	83398372	DNA	URR1B	MER1_type	chr17URR1B83398173	NonProperStrand	1	chr17	83398720	83398792	Low_complexity	GA-rich	Low_complexity	chr17GA-rich83398645	ProperStrand	1	1	-inf
chr5	68206108	68206191	protein_coding-noncoding	Atp8a1	utr3	ENSMUSG00000037685	ProperStrand	1	chr9	123462108	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	70963741	70963820	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	120488685	120488754	protein_coding	Mafg	utr3	ENSMUSG00000051510	NonProperStrand	22	1	-8.2163
chr2	149168323	149168348	LINE	L1Md_F2	L1	chr2L1Md_F2149168007	NonProperStrand	1	chr17	39848200	39848320	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr13	107866789	107866856	Simple_repeat	(TTCTCC)n	Simple_repeat	chr13(TTCTCC)n107866686	NonProperStrand	1	chr5	144314471	144314528	protein_coding	2810453I06Rik	intron	ENSMUSG00000048910	NonProperStrand	6	1	-inf
chr16	20115932	20115959	protein_coding	Klhl24	intron	ENSMUSG00000062901	ProperStrand	54	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.8392
chr13	78806689	78806789	SINE	ID	ID	chr13ID78806696	ProperStrand	1	chr13	78806857	78806947	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n78806848	NonProperStrand	1	1	-inf
chr17	35147278	35147321	protein_coding	Vars	intron	ENSMUSG00000007029	ProperStrand	65	chr17	35135415	35136143	protein_coding	D17H6S56E-5	exon	ENSMUSG00000091747	NonProperStrand	3	1	-18.4486
chr18	62432339	62432439	DNA	URR1A	MER1_type	chr18URR1A62432325	NonProperStrand	1	chr18	62432635	62432725	LINE	L1MB7	L1	chr18L1MB762432533	ProperStrand	1	1	-inf
chr11	63895423	63895512	lincRNA	2810001G20Rik	intron	ENSMUSG00000087497	NonProperStrand	2	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr5	121445117	121445134	protein_coding	Rph3a	intron	ENSMUSG00000029608	ProperStrand	32	chr1	21066190	21066249	protein_coding	Tram2	intron	ENSMUSG00000041779	ProperStrand	58	1	-13.3618
chr17	70797446	70797505	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr4	109887899	109887968	protein_coding	Elavl4	intron	ENSMUSG00000028546	NonProperStrand	51	1	-8.7680
chr17	39846462	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	123666552	123666663	LTR	MLT1H1	MaLR	chr4MLT1H1123666398	NonProperStrand	1	1	-inf
chr7	68109485	68109513	LINE	L1_Mus2	L1	chr7L1_Mus268109117	NonProperStrand	6	chr11	98039697	98040125	protein_coding	Med1	intron	ENSMUSG00000018160	ProperStrand	21	1	-19.2239
chr17	39846818	39846844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	80053814	80053850	SINE	B2_Mm1a	B2	chr10B2_Mm1a80053749	NonProperStrand	4	1	-3.6552
chr1	136364891	136364971	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr11	44559738	44559808	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	1	-8.9086
chr13	29967070	29967096	LINE	L1_Mus4	L1	chr13L1_Mus429967042	ProperStrand	15	chr13	29966819	29966864	SINE	B1_Mur1	Alu	chr13B1_Mur129966781	ProperStrand	4	1	-inf
chr2	120089671	120089766	SINE	B3	B2	chr2B3120089598	ProperStrand	1	chr2	120101896	120101915	protein_coding	Pla2g4d	intron	ENSMUSG00000070719	ProperStrand	9	1	-inf
chr4	48955471	48955497	lincRNA	Gm12436	intron	ENSMUSG00000084787	NonProperStrand	5	chr15	47539996	47540114	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-15.3376
chr15	89289961	89293467	protein_coding	Mapk8ip2	intron	ENSMUSG00000022619	NonProperStrand	18	chr13	97190606	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.5176
chr17	39848099	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	77277291	77277359	protein_coding	Coro6	utr5	ENSMUSG00000020836	ProperStrand	2	1	-8.4422
chr17	4082483	4082573	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr11	74302694	74302794	protein_coding	Rap1gap2	intron	ENSMUSG00000038807	ProperStrand	11	1	-14.3292
chr11	109011652	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	61539488	61539543	SINE	RSINE1	B4	chr11RSINE161539403	ProperStrand	1	1	-inf
chr8	91029361	91029444	LTR	MLT1G1	MaLR	chr8MLT1G191029261	NonProperStrand	1	chr14	47398191	47398211	protein_coding	Cnih	intron	ENSMUSG00000015759	ProperStrand	19	1	-inf
chr12	40410733	40410823	DNA	MER45C	Tip100	chr12MER45C40410635	ProperStrand	6	chr17	33132509	33132609	protein_coding	Zfp952	intron	ENSMUSG00000053390	NonProperStrand	1	1	-inf
chr10	30811159	30811214	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr5	148515099	148515146	protein_coding	Flt1	intron	ENSMUSG00000029648	ProperStrand	93	1	-14.2627
chr11	94919711	94919741	protein_coding	Itga3	intron	ENSMUSG00000001507	NonProperStrand	1	chr7	128270560	128270580	protein_coding	Otoa	intron	ENSMUSG00000034990	NonProperStrand	7	1	-inf
chr7	133112821	133112894	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	chr7	121988409	121988492	protein_coding	Insc	intron	ENSMUSG00000048782	NonProperStrand	66	1	-4.9969
chr17	39843001	39843059	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr11	97048154	97048189	protein_coding	Kpnb1	intron	ENSMUSG00000001440	NonProperStrand	15	1	-8.1613
chr7	126765711	126765786	protein_coding	Acsm1	intron	ENSMUSG00000033533	ProperStrand	43	chr11	88445320	88445379	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	2	-11.1636
chr9	80713187	80713277	DNA	BLACKJACK	AcHobo	chr9BLACKJACK80713093	ProperStrand	1	chr9	80713619	80713719	LINE	Lx	L1	chr9Lx80713305	NonProperStrand	1	1	-inf
chr9	100646627	100646663	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	chr14	24493377	24493496	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-9.8492
chr17	39847028	39847142	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	52313714	52313731	protein_coding	Gm17079	intron	ENSMUSG00000090740	NonProperStrand	1	1	-inf
chr4	130754880	130754965	LTR	ORR1E	MaLR	chr4ORR1E130754802	ProperStrand	1	chr8	109597884	109597959	protein_coding	Terf2	intron	ENSMUSG00000031921	ProperStrand	37	1	-inf
chr2	92204754	92204820	protein_coding	Phf21a	utr3	ENSMUSG00000058318	ProperStrand	24	chr1	136760361	136760437	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-12.1626
chr9	114904864	114904954	LTR	RLTR14	ERV1	chr9RLTR14114904790	ProperStrand	4	chr9	114903681	114904788	SINE	B1_Mur3	Alu	chr9B1_Mur3114903611	NonProperStrand	4	4	-inf
chr11	58059210	58059310	SINE	B3A	B2	chr11B3A58059183	NonProperStrand	9	chr11	58058867	58059209	Simple_repeat	(TTC)n	Simple_repeat	chr11(TTC)n58058695	ProperStrand	7	2	-20.8997
chr17	39847207	39847290	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	17849496	17849548	protein_coding-noncoding	Dgcr2	utr3	ENSMUSG00000003166	ProperStrand	4	1	-4.8204
chr6	71389273	71389306	protein_coding	Rmnd5a	intron	ENSMUSG00000002222	ProperStrand	14	chr8	89018194	89018217	protein_coding	Abcc12	intron	ENSMUSG00000036872	ProperStrand	128	1	-13.4655
chr11	98086177	98086249	protein_coding-noncoding	Cdk12	utr5	ENSMUSG00000003119	NonProperStrand	4	chr9	123461881	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-10.7746
chr17	39847533	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	104436382	104440839	protein_coding	Hsd17b11	intron	ENSMUSG00000029311	NonProperStrand	34	6	-5.0254
chr19	47252154	47252209	LINE	L2b	L2	chr19L2b47252152	NonProperStrand	1	chr19	47245449	47245503	protein_coding	Gm6970	exon	ENSMUSG00000091230	NonProperStrand	8	1	-inf
chr8	26157246	26157274	protein_coding	Plekha2	intron	ENSMUSG00000031557	ProperStrand	7	chr12	8253716	8253810	protein_coding	1110057K04Rik	intron	ENSMUSG00000037669	ProperStrand	64	1	-16.3071
chr1	132515794	132515878	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	28	chr8	121959955	121960029	protein_coding	Osgin1	intron	ENSMUSG00000074063	ProperStrand	36	1	-14.6049
chr18	21013115	21013168	protein_coding	Trappc8	intron	ENSMUSG00000033382	NonProperStrand	16	chr2	44706445	44706488	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	85	2	-22.0417
chrX	105106426	105106526	LINE	L1_Mur1	L1	chrXL1_Mur1105104160	NonProperStrand	4	chr8	40753087	40753177	SINE	B2_Mm2	B2	chr8B2_Mm240753045	NonProperStrand	1	1	-inf
chr13	54590668	54590749	LTR	RMER10A	ERVL	chr13RMER10A54590691	ProperStrand	1	chr17	39846725	39846748	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	45346746	45346772	LINE	L1_Mur1	L1	chr14L1_Mur145346470	NonProperStrand	3	chr16	91675493	91675516	protein_coding-noncoding	Son	utr5	ENSMUSG00000022961	ProperStrand	1	1	-inf
chr17	39843935	39843975	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr2	73012735	73012765	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	1	-3.5473
chr1	89131240	89131260	protein_coding	Eif4e2	utr3	ENSMUSG00000026254	NonProperStrand	1	chr10	69344758	69344848	protein_coding	Ank3	intron	ENSMUSG00000069601	NonProperStrand	77	1	-inf
chr2	180171598	180171665	LTR	RMER17B	ERVK	chr2RMER17B180170814	ProperStrand	2	chr2	32157004	32157061	protein_coding-noncoding	Golga2	utr5	ENSMUSG00000002546	ProperStrand	4	1	-22.1285
chr2	78007490	78007590	lincRNA	4930440I19Rik	intron	ENSMUSG00000085431	NonProperStrand	28	chr2	77989334	77989424	lincRNA	4930440I19Rik	intron	ENSMUSG00000085431	ProperStrand	6	1	-18.7753
chr12	102627679	102627697	LINE	L1M2	L1	chr12L1M2102627332	NonProperStrand	1	chr12	113045500	113047036	protein_coding	Klc1	intron	ENSMUSG00000021288	ProperStrand	57	1	-inf
chr12	79332477	79332527	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	chr7	98815666	98815690	snRNA	ENSMUSG00000064403_U1	.	ENSMUSG00000064403	ProperStrand	2	1	-14.3598
chr11	109048662	109048752	LTR	MLT1C	MaLR	chr11MLT1C109048510	ProperStrand	1	chr11	109048840	109048940	SINE	MIRc	MIR	chr11MIRc109048793	ProperStrand	1	1	-inf
chrX	74272481	74272547	SINE	B3	B2	chrXB374272477	ProperStrand	15	chr13	3561954	3562010	protein_coding	Gdi2	intron	ENSMUSG00000021218	ProperStrand	39	1	-15.7269
chr12	40770263	40770353	LTR	MMETn-int	ERVK	chr12MMETn-int40770278	ProperStrand	1	chr12	40770462	40770562	LTR	RLTR9C	ERVK	chr12RLTR9C40770367	ProperStrand	1	1	-inf
chr5	101799635	101799770	LTR	MLT2B1	ERVL	chr5MLT2B1101799605	ProperStrand	1	chr2	36094031	36094048	protein_coding	Ptgs1	intron	ENSMUSG00000047250	ProperStrand	13	1	-inf
chr6	3201472	3201537	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr1	66788600	66788679	protein_coding	1110028C15Rik	intron	ENSMUSG00000026004	NonProperStrand	13	1	-5.8236
chr19	5798719	5798758	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr4	119278953	119279027	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	1	-3.1362
chr5	146261028	146261102	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	67949857	67949936	protein_coding	Seh1l	intron	ENSMUSG00000079614	ProperStrand	14	1	-7.9707
chr15	73184322	73184393	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr4	139338339	139338388	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	1	-7.3323
chr13	104720497	104792532	LINE	L1Md_A	L1	chr13L1Md_A104786115	NonProperStrand	4	chr13	104658084	104661357	protein_coding	Erbb2ip	intron	ENSMUSG00000021709	ProperStrand	54	2	-inf
chr16	78779789	78779889	LINE	L1Md_F2	L1	chr16L1Md_F278779499	ProperStrand	1	chr12	67667897	67667987	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr6	125144616	125144674	protein_coding	Mrpl51	utr3	ENSMUSG00000030335	ProperStrand	8	chr15	53566548	53566596	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-12.4790
chr17	39847491	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	90902875	90904454	protein_coding	Slc39a13	utr3	ENSMUSG00000002105	ProperStrand	5	1	-3.2379
chr14	50924630	50924730	LTR	ORR1D1-int	MaLR	chr14ORR1D1-int50924435	ProperStrand	2	chr14	50924752	50924842	LTR	RMER19C	ERVK	chr14RMER19C50924750	NonProperStrand	3	2	-inf
chr9	120128485	120128585	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120128151	ProperStrand	6	chr9	123462018	123462108	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr11	68356924	68357027	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	chr1	133603973	133604022	protein_coding	5430435G22Rik	intron	ENSMUSG00000052688	NonProperStrand	19	1	-12.4507
chr17	39847341	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	75859377	75860150	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	78	11	-5.1736
chr14	123581612	123581711	LINE	L1Md_F3	L1	chr14L1Md_F3123581588	ProperStrand	1	chr14	123581278	123581368	LTR	MTE2a	MaLR	chr14MTE2a123581268	ProperStrand	1	1	-inf
chr7	109603334	109603369	protein_coding	Rrm1	intron	ENSMUSG00000030978	NonProperStrand	23	chr14	11795364	11795460	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-9.8072
chr14	99427002	99427054	LTR	MTC-int	MaLR	chr14MTC-int99426140	ProperStrand	2	chr1	180811942	180813521	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	62	1	-19.5353
chr17	39847230	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	14120845	14120927	protein_coding	Synpr	intron	ENSMUSG00000056296	NonProperStrand	9	1	-3.1539
chr6	52189839	52189858	protein_coding	Hoxa10	intron	ENSMUSG00000000938	NonProperStrand	4	chr19	34886871	34886967	protein_coding	Pank1	intron	ENSMUSG00000033610	NonProperStrand	27	1	-19.4870
chrX	88584300	88584400	LINE	L1_Mur3	L1	chrXL1_Mur388583491	NonProperStrand	1	chrX	88584532	88584622	LTR	RLTR26	ERVK	chrXRLTR2688584389	ProperStrand	1	1	-inf
chr12	3908859	3908928	protein_coding	Dnmt3a	utr3	ENSMUSG00000020661	ProperStrand	101	chr4	104371597	104371670	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	107	1	-9.8145
chr6	52056630	52056647	lincRNA	Gm15055	intron	ENSMUSG00000085412	ProperStrand	1	chr5	122170360	122170468	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	1	-inf
chr3	147838230	147838330	LINE	Lx8	L1	chr3Lx8147837888	ProperStrand	1	chr3	147838752	147838842	Simple_repeat	(CATA)n	Simple_repeat	chr3(CATA)n147838663	NonProperStrand	1	1	-inf
chr12	54696886	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr7	140965019	140965063	protein_coding	Dhx32	intron	ENSMUSG00000030986	NonProperStrand	18	1	-12.8239
chr10	83383632	83383748	LINE	Lx9	L1	chr10Lx983383624	NonProperStrand	2	chr1	165870479	165870505	protein_coding	Scyl3	intron	ENSMUSG00000026584	NonProperStrand	38	2	-inf
chr14	31698154	31698254	LINE	L1_Mur2	L1	chr14L1_Mur231697980	NonProperStrand	5	chr14	31698248	31698338	SINE	B1_Mus1	Alu	chr14B1_Mus131698261	NonProperStrand	5	5	-inf
chr17	39846807	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	70777623	70777738	protein_coding	Piwil2	intron	ENSMUSG00000033644	NonProperStrand	3	1	-4.3017
chr5	5704731	5704760	LINE	L1MB7	L1	chr5L1MB75704631	NonProperStrand	1	chr17	39847160	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr14	19779690	19781182	LINE	L1Md_F2	L1	chr14L1Md_F219780460	ProperStrand	4	chr14	19789789	19790286	LINE	Lx2	L1	chr14Lx219788632	ProperStrand	19	1	-20.0437
chr2	22744824	22744978	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	39846205	39847715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	107	-inf
chr6	119400733	119400784	protein_coding	Wnt5b	intron	ENSMUSG00000030170	ProperStrand	60	chr13	77928811	77928910	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-11.7708
chr17	39846453	39846541	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	86415004	86415022	protein_coding	Dennd4c	intron	ENSMUSG00000038024	NonProperStrand	2	1	-5.3533
chr11	107370256	107370365	LTR	MLT1B	MaLR	chr11MLT1B107370280	ProperStrand	1	chr17	39847205	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr6	72900968	72901068	SINE	B1F	Alu	chr6B1F72900957	ProperStrand	1	chr6	72900818	72900908	SINE	ID_B1	B4	chr6ID_B172900718	ProperStrand	1	1	-inf
chr8	70898987	70899033	antisense	1700125H03Rik	.	ENSMUSG00000085197	ProperStrand	4	chr15	79151664	79151732	protein_coding	Pla2g6	intron	ENSMUSG00000042632	NonProperStrand	42	1	-18.6762
chr5	142961741	142962615	protein_coding-noncoding	Radil	utr3	ENSMUSG00000029576	NonProperStrand	6	chr5	142961374	142962799	protein_coding	Radil	exon	ENSMUSG00000029576	NonProperStrand	99	6	-inf
chr15	81602648	81602699	protein_coding	Zc3h7b	intron	ENSMUSG00000022390	ProperStrand	45	chrX	12650847	12650889	protein_coding	Usp9x	intron	ENSMUSG00000031010	NonProperStrand	21	1	-14.7366
chr19	47253353	47253409	protein_coding	Neurl1a	utr5	ENSMUSG00000006435	ProperStrand	24	chr9	40180810	40180876	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-9.9271
chr7	58824362	58824378	protein_coding	Ano5	intron	ENSMUSG00000055489	NonProperStrand	5	chr14	7951083	7951133	protein_coding	Gm6676	intron	ENSMUSG00000072729	NonProperStrand	3	1	-inf
chr19	53328693	53328759	SINE	B1_Mur2	Alu	chr19B1_Mur253328694	ProperStrand	1	chr17	39843359	39843430	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chrX	103474242	103474284	LINE	L1Md_F2	L1	chrXL1Md_F2103473684	NonProperStrand	19	chr14	60992571	60992663	LTR	MLT1C	MaLR	chr14MLT1C60992567	NonProperStrand	1	1	-inf
chr6	97204426	97204526	SINE	B1F	Alu	chr6B1F97204397	ProperStrand	1	chr9	123461941	123462031	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	122033210	122033292	LTR	MTE2b-int	MaLR	chr2MTE2b-int122033174	NonProperStrand	1	chr2	122033441	122033513	SINE	B3	B2	chr2B3122033349	ProperStrand	1	1	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	5004411	5004443	SINE	ID_B1	B4	chr2ID_B15004301	ProperStrand	1	1	-inf
chr6	30281799	30281890	SINE	B1_Mus1	Alu	chr6B1_Mus130281820	NonProperStrand	1	chr6	30281686	30281786	lincRNA	1700095J07Rik	intron	ENSMUSG00000084861	NonProperStrand	16	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr15	53143884	53144016	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	1	-5.2612
chr15	5234834	5234850	LINE	L1Md_A	L1	chr15L1Md_A5234368	NonProperStrand	3	chr13	97190563	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr17	39846826	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	17079552	17079669	protein_coding	Ypel1	intron	ENSMUSG00000022773	NonProperStrand	3	1	-4.3017
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr2	14137541	14138182	protein_coding	Fam23a	intron	ENSMUSG00000061531	ProperStrand	23	1	-7.8860
mmu-miR-3470b	2	18	miRNA	mmu-miR-3470b	.	mmu-miR-3470b	ProperStrand	1	chr5	21046795	21046926	protein_coding	Fbxl13	intron	ENSMUSG00000048520	ProperStrand	33	1	-inf
chr9	106431293	106431361	Other	RMER1A	Other	chr9RMER1A106431168	ProperStrand	15	chr13	112578197	112578275	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-6.9396
chr17	47210508	47210561	LINE	Lx3C	L1	chr17Lx3C47209550	NonProperStrand	4	chr17	47227291	47227386	LTR	ORR1C2	MaLR	chr17ORR1C247227293	ProperStrand	1	1	-inf
chr5	98467468	98467568	LINE	L1MC4	L1	chr5L1MC498467479	ProperStrand	1	chr5	98467141	98467231	LINE	L1MD2	L1	chr5L1MD298466964	ProperStrand	1	1	-inf
chr13	86999784	86999884	LINE	MusHAL1	L1	chr13MusHAL186999124	NonProperStrand	1	chr9	57595903	57595995	protein_coding	Edc3	intron	ENSMUSG00000038957	NonProperStrand	7	1	-inf
chr2	126832106	126832152	SINE	B3A	B2	chr2B3A126832044	ProperStrand	1	chr13	65381576	65381630	protein_coding	Zfp369	exon	ENSMUSG00000021514	NonProperStrand	1	1	-inf
chr8	109090346	109090436	LTR	MTD	MaLR	chr8MTD109090218	ProperStrand	4	chr8	109090458	109090558	LTR	RLTR23	ERV1	chr8RLTR23109090467	NonProperStrand	2	2	-inf
chr11	3358122	3358175	lincRNA	8430429K09Rik	exon	ENSMUSG00000034587	NonProperStrand	38	chr11	3347081	3347644	protein_coding	Rnf185	intron	ENSMUSG00000020448	ProperStrand	20	1	-15.1882
chr13	54878806	54878906	LTR	RLTR13C2	ERVK	chr13RLTR13C254878754	ProperStrand	1	chr13	54879169	54879259	antisense	Gm16249	.	ENSMUSG00000084949	ProperStrand	1	1	-inf
chr7	25778377	25778467	protein_coding-noncoding	Atp1a3	utr3	ENSMUSG00000040907	ProperStrand	1	chr7	25774634	25778378	protein_coding	Atp1a3	exon	ENSMUSG00000040907	ProperStrand	7	1	-inf
chr1	34871439	34871529	protein_coding	Fam168b	utr3	ENSMUSG00000037503	NonProperStrand	1	chr1	34869278	34869378	protein_coding	Arhgef4	utr3	ENSMUSG00000037509	ProperStrand	26	1	-inf
chr17	39847277	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	99057141	99057157	protein_coding	Kcnh3	intron	ENSMUSG00000037579	ProperStrand	5	1	-4.3348
chr18	35495972	35496012	protein_coding	Sil1	intron	ENSMUSG00000024357	ProperStrand	39	chr3	89855849	89855866	protein_coding	4933434E20Rik	intron	ENSMUSG00000027942	ProperStrand	1	1	-inf
chr10	123251076	123251166	LINE	L1_Mus4	L1	chr10L1_Mus4123251086	ProperStrand	1	chr10	123250944	123251044	LINE	Lx7	L1	chr10Lx7123250818	ProperStrand	1	1	-inf
chr8	11620024	11620139	protein_coding	Ankrd10	intron	ENSMUSG00000031508	ProperStrand	164	chr15	12180655	12180671	protein_coding	Mtmr12	intron	ENSMUSG00000039458	NonProperStrand	9	1	-13.8958
chrX	9758953	9759053	protein_coding-noncoding	Rpgr	utr3	ENSMUSG00000031174	ProperStrand	1	chrX	9759070	9759160	protein_coding	Rpgr	exon	ENSMUSG00000031174	ProperStrand	2	1	-inf
chrX	12801863	12801886	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.9150
chr14	33967456	33967556	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	chrX	93136870	93136960	protein_coding	Las1l	intron	ENSMUSG00000057421	NonProperStrand	2	1	-19.0294
chr7	136906720	136906810	LTR	MLT1A0	MaLR	chr7MLT1A0136906707	NonProperStrand	2	chr11	59447100	59447200	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n59447110	NonProperStrand	1	1	-inf
chr19	61121264	61121372	protein_coding	Grk5	intron	ENSMUSG00000003228	NonProperStrand	16	chr9	123461957	123461988	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chrX	76128868	76128890	LINE	Lx7	L1	chrXLx776128816	NonProperStrand	6	chr17	39847613	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-8.2102
chr17	39847843	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	47585621	47585671	SINE	B1_Mus2	Alu	chr6B1_Mus247585578	ProperStrand	1	1	-inf
chr6	149309723	149309844	LINE	L1M2	L1	chr6L1M2149309731	ProperStrand	2	chr6	149309637	149309669	SINE	PB1D9	Alu	chr6PB1D9149309614	ProperStrand	2	2	-inf
chr10	80705076	80705166	protein_coding-noncoding	Zfr2	utr5	ENSMUSG00000034949	ProperStrand	2	chr10	80705243	80705343	protein_coding	Zfr2	intron	ENSMUSG00000034949	ProperStrand	2	2	-inf
chr6	13091705	13091795	LINE	Lx7	L1	chr6Lx713091437	ProperStrand	2	chr6	13091820	13091920	LINE	Lx7	L1	chr6Lx713091834	ProperStrand	1	1	-inf
chr5	136932995	136933016	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	113	chr7	126795457	126795660	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-7.5096
chr5	146260992	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr13	97190543	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	23	-inf
chr17	4082155	4082255	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr1	71086368	71086458	pseudogene	Gm16236	.	ENSMUSG00000089965	ProperStrand	2	1	-15.1159
chr17	4082214	4082264	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr15	86438232	86438320	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n86438240	ProperStrand	1	1	-inf
chr6	3201474	3201515	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	8681224	8681324	protein_coding	Ica1	intron	ENSMUSG00000062995	ProperStrand	18	1	-5.1708
chr6	50564794	50564837	LTR	IAPEz-int	ERVK	chr6IAPEz-int50563355	NonProperStrand	3	chr12	109646130	109646194	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-14.1501
chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	120577026	120577091	protein_coding	Ttbk2	intron	ENSMUSG00000090100	NonProperStrand	17	1	-6.9833
chr10	77997550	77999846	LINE	L1_Mur2	L1	chr10L1_Mur277996365	ProperStrand	7	chr10	77995268	77995368	LINE	L1_Mus1	L1	chr10L1_Mus177994833	NonProperStrand	17	6	-20.1142
chr17	39847513	39847577	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	40748605	40748629	LTR	MTB	MaLR	chr4MTB40748471	NonProperStrand	2	1	-5.4040
chr4	56875360	56875384	protein_coding	Ctnnal1	intron	ENSMUSG00000038816	ProperStrand	58	chr3	138958597	138958665	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	NonProperStrand	81	1	-11.4870
chr11	97833611	97833701	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	chr5	121735823	121735923	protein_coding	Gm15800	intron	ENSMUSG00000042744	ProperStrand	172	1	-8.3316
chr9	26209005	26209095	LINE	L1Md_T	L1	chr9L1Md_T26208084	NonProperStrand	1	chr17	35384498	35384598	protein_coding	Ddx39b	intron	ENSMUSG00000019432	NonProperStrand	9	1	-inf
chr14	109939510	109939600	LINE	L1Md_F3	L1	chr14L1Md_F3109939232	ProperStrand	1	chr14	109939780	109939880	LINE	Lx5	L1	chr14Lx5109939765	NonProperStrand	1	1	-inf
chr12	18043510	18043600	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int18043047	NonProperStrand	2	chr12	18043659	18043759	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int18043681	NonProperStrand	2	2	-inf
chr1	72861519	72861537	LTR	RMER17C	ERVK	chr1RMER17C72861403	NonProperStrand	1	chr1	132592263	132592386	protein_coding	Pfkfb2	utr3	ENSMUSG00000026409	ProperStrand	26	1	-inf
chr2	5379299	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr2	31500870	31501513	protein_coding	Prdm12	intron	ENSMUSG00000079466	ProperStrand	45	1	-5.1038
chr7	112787565	112787599	protein_coding	Arfip2	exon	ENSMUSG00000030881	NonProperStrand	24	chr7	112788756	112788844	protein_coding	Fxc1	utr5	ENSMUSG00000089847	ProperStrand	81	2	-20.2683
chr13	76176465	76176565	LINE	L1VL2	L1	chr13L1VL276176423	ProperStrand	1	chr13	76179351	76179441	LINE	L1VL2	L1	chr13L1VL276178727	NonProperStrand	2	1	-inf
chr4	124922729	124922775	LINE	Lx8	L1	chr4Lx8124922305	ProperStrand	1	chr5	31078324	31078368	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	1	-inf
chr15	44582749	44582839	protein_coding	Sybu	intron	ENSMUSG00000022340	ProperStrand	4	chr15	80137702	80137802	protein_coding	Cacna1i	intron	ENSMUSG00000022416	NonProperStrand	8	1	-inf
chr17	39846452	39846512	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	90825121	90825171	LTR	MTA_Mm	MaLR	chr6MTA_Mm90824908	NonProperStrand	4	1	-3.6552
chr17	39846883	39846972	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	74638866	74638882	protein_coding	Mettl16	utr3	ENSMUSG00000010554	NonProperStrand	3	1	-4.3017
chr7	19766838	19766866	miRNA	Mir330	.	ENSMUSG00000065543	NonProperStrand	1	chr7	19766970	19768471	protein_coding-noncoding	Eml2	utr5	ENSMUSG00000040811	NonProperStrand	3	1	-inf
chr1	136321367	136321473	protein_coding	Adipor1	exon	ENSMUSG00000026457	NonProperStrand	20	chr18	65478456	65478502	protein_coding	Alpk2	intron	ENSMUSG00000032845	NonProperStrand	17	1	-16.7859
chr11	6623819	6623916	LINE	Lx7	L1	chr11Lx76623809	ProperStrand	22	chr9	100900309	100900342	protein_coding	Pccb	intron	ENSMUSG00000032527	NonProperStrand	19	1	-16.3803
chr17	39847562	39847791	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	112262398	112262555	LTR	MERVL-int	ERVL	chr2MERVL-int112257458	NonProperStrand	7	2	-4.7560
chr12	32828051	32828120	LTR	RLTR18B	ERVK	chr12RLTR18B32828041	NonProperStrand	1	chr7	107258709	107258768	protein_coding	Pold3	intron	ENSMUSG00000030726	NonProperStrand	33	1	-inf
chr10	78438307	78438407	LINE	L1Md_F2	L1	chr10L1Md_F278438033	NonProperStrand	1	chr10	78438542	78438632	LINE	Lx2	L1	chr10Lx278438477	NonProperStrand	5	1	-inf
chr5	138133964	138134020	SINE	B3	B2	chr5B3138133868	NonProperStrand	2	chrX	53052371	53052417	pseudogene	Gm6664	.	ENSMUSG00000082441	NonProperStrand	8	1	-23.4058
chr17	70963679	70963765	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr5	105719711	105719737	protein_coding	Gbp6	intron	ENSMUSG00000079362	NonProperStrand	66	1	-6.0197
chr9	83806129	83806178	LINE	L1VL4	L1	chr9L1VL483806057	NonProperStrand	1	chr17	39846352	39846411	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	104680189	104680220	protein_coding	Erbb2ip	intron	ENSMUSG00000021709	ProperStrand	54	chr2	5379297	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.7507
chr8	114904389	114904479	LINE	L1MB8	L1	chr8L1MB8114904398	NonProperStrand	5	chr8	114904481	114904581	SINE	B1_Mur4	Alu	chr8B1_Mur4114904479	ProperStrand	5	5	-inf
chr11	75756824	75756857	LTR	MTE2b	MaLR	chr11MTE2b75756691	NonProperStrand	13	chr9	123461932	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr4	63472667	63472757	LTR	MTD	MaLR	chr4MTD63472483	NonProperStrand	1	chr4	63461337	63472679	SINE	B3A	B2	chr4B3A63461291	ProperStrand	1	1	-inf
chr1	46836097	46836124	SINE	B1_Mus2	Alu	chr1B1_Mus246836031	NonProperStrand	1	chr15	83503036	83503173	protein_coding	Scube1	intron	ENSMUSG00000016763	ProperStrand	120	1	-inf
chr2	22744851	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr10	76415538	76415606	protein_coding	Pcbp3	intron	ENSMUSG00000001120	ProperStrand	179	1	-4.6742
chr11	101055058	101055089	protein_coding	Ezh1	exon	ENSMUSG00000006920	NonProperStrand	13	chr9	123461931	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr13	9834305	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr5	23852209	23852242	protein_coding	Kcnh2	intron	ENSMUSG00000038319	NonProperStrand	16	1	-11.7917
chr15	12915894	12915930	LTR	MLT1B	MaLR	chr15MLT1B12915846	NonProperStrand	1	chr17	39846801	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	90729734	90729806	protein_coding	C1qtnf4	utr5	ENSMUSG00000040794	ProperStrand	2	chr13	97190546	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-inf
chr6	124396078	124396147	protein_coding	Clstn3	intron	ENSMUSG00000008153	ProperStrand	30	chr4	11173778	11173857	protein_coding	Ints8	intron	ENSMUSG00000040738	NonProperStrand	55	1	-13.6008
chr8	120654726	120654816	LTR	RLTR15	ERVK	chr8RLTR15120654748	ProperStrand	1	chr8	120654385	120654485	SINE	B4	B4	chr8B4120654325	NonProperStrand	1	1	-inf
chr17	63884602	63884684	LTR	ORR1D1	MaLR	chr17ORR1D163884461	ProperStrand	1	chr11	120139050	120139098	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	136	1	-inf
chr2	94401963	94401984	LINE	Lx5	L1	chr2Lx594401032	ProperStrand	1	chr18	5232506	5232636	protein_coding	Zfp438	intron	ENSMUSG00000050945	ProperStrand	23	1	-inf
chr11	117361725	117361851	LTR	IAPEz-int	ERVK	chr11IAPEz-int117361459	ProperStrand	13	chr2	153666009	153666040	LTR	RMER17C	ERVK	chr2RMER17C153665744	NonProperStrand	4	2	-inf
chr1	39475378	39475444	protein_coding	Tbc1d8	intron	ENSMUSG00000003134	NonProperStrand	6	chr9	123461802	123461861	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr17	39847257	39847309	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	8509619	8509659	protein_coding	Glcci1	intron	ENSMUSG00000029638	ProperStrand	7	1	-3.6430
chr6	68922114	68922214	LINE	L1Md_T	L1	chr6L1Md_T68920440	ProperStrand	1	chr6	68983168	68983258	LINE	L1Md_T	L1	chr6L1Md_T68979525	NonProperStrand	2	1	-inf
chr5	115272400	115272444	protein_coding	2610524H06Rik	utr3	ENSMUSG00000092486	ProperStrand	4	chr14	52209784	52209845	pseudogene	Gm17174	.	ENSMUSG00000091036	ProperStrand	2	1	-20.9262
chr14	56745109	56745209	LINE	L1_Mur3	L1	chr14L1_Mur356745024	NonProperStrand	4	chr14	56745272	56745362	LTR	RLTR28	ERVL	chr14RLTR2856745282	NonProperStrand	6	4	-inf
chr2	5379271	5379347	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chrX	8091961	8091980	protein_coding	Ssxb6	intron	ENSMUSG00000079702	NonProperStrand	21	1	-6.6136
chr17	39846941	39847015	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	79710722	79710796	SINE	RSINE1	B4	chr10RSINE179710712	NonProperStrand	3	1	-4.3017
chr6	119966616	119966642	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	chr5	134627605	134627653	protein_coding	Wbscr16	intron	ENSMUSG00000061979	ProperStrand	39	1	-12.6705
chr5	105748136	105748226	LINE	L1Md_F2	L1	chr5L1Md_F2105743833	NonProperStrand	34	chr10	52545447	52545547	protein_coding	Slc35f1	intron	ENSMUSG00000038602	ProperStrand	51	1	-13.5006
chrX	75853968	75854056	LINE	L1Md_A	L1	chrXL1Md_A75852341	ProperStrand	1	chrX	75851327	75851383	SINE	B2_Mm2	B2	chrXB2_Mm275851238	NonProperStrand	1	1	-inf
chr17	39846750	39846838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	67786697	67786714	protein_coding	Zfp738	intron	ENSMUSG00000048280	NonProperStrand	5	1	-3.1907
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	49632373	49632475	LTR	RLTR19-int	ERVK	chr4RLTR19-int49631941	ProperStrand	1	1	-inf
chr4	126980437	126980527	SINE	ID_B1	B4	chr4ID_B1126980435	ProperStrand	1	chr4	126980635	126980735	Simple_repeat	(CTGGGG)n	Simple_repeat	chr4(CTGGGG)n126980651	ProperStrand	1	1	-inf
chr4	95117575	95117651	LINE	L1M3	L1	chr4L1M395117594	NonProperStrand	1	chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr16	44586109	44586199	LINE	Lx8	L1	chr16Lx844586093	ProperStrand	1	chr11	105140566	105140666	protein_coding	Tlk2	intron	ENSMUSG00000020694	NonProperStrand	5	1	-inf
chr3	94994293	94994341	protein_coding-noncoding	Gabpb2	utr3	ENSMUSG00000038766	NonProperStrand	2	chr3	95004305	95004372	protein_coding	Gabpb2	intron	ENSMUSG00000038766	NonProperStrand	12	1	-inf
chr17	39847203	39847265	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	23550258	23550309	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int23549476	ProperStrand	5	1	-4.3348
chr17	31740113	31740145	protein_coding	Pknox1	intron	ENSMUSG00000006705	ProperStrand	1	chr12	78350924	78351053	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr17	39847160	39847250	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	3943598	3943622	protein_coding	Unc93b1	exon	ENSMUSG00000036908	ProperStrand	2	1	-6.5615
chr6	42606102	42606192	LINE	L1_Mur2	L1	chr6L1_Mur242606047	ProperStrand	1	chr6	42605693	42605793	LINE	Lx5	L1	chr6Lx542605473	ProperStrand	1	1	-inf
chr4	82458852	82458933	protein_coding	Zdhhc21	intron	ENSMUSG00000028403	ProperStrand	77	chr5	114852004	114852027	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-8.8033
chr12	113161821	113163071	DNA	Tigger9a	Tigger	chr12Tigger9a113161750	ProperStrand	1	chr12	113163095	113163195	LTR	MTB	MaLR	chr12MTB113162885	ProperStrand	3	1	-inf
chr17	32054341	32054441	LINE	L1MD	L1	chr17L1MD32054334	ProperStrand	2	chr17	32054235	32054325	SINE	PB1D10	Alu	chr17PB1D1032054243	NonProperStrand	2	2	-inf
chr7	97618800	97618850	protein_coding-noncoding	Tmem126b	utr3	ENSMUSG00000030614	NonProperStrand	2	chr7	97618376	97618474	protein_coding	Tmem126b	intron	ENSMUSG00000030614	NonProperStrand	3	1	-20.8297
chr15	49386526	49386550	LTR	MTE2a	MaLR	chr15MTE2a49386489	ProperStrand	2	chr16	31012152	31012279	protein_coding	AI480653	intron	ENSMUSG00000047434	ProperStrand	310	2	-inf
chr13	112578190	112578280	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr18	37839509	37839609	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	1	-3.0547
chr7	16368621	16370303	LINE	L1_Mur2	L1	chr7L1_Mur216368608	ProperStrand	8	chr9	64176990	64177026	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-13.0813
chr16	57144693	57144753	protein_coding	Tomm70a	intron	ENSMUSG00000022752	ProperStrand	50	chr13	44869609	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.8431
chr10	115199756	115202511	LINE	Lx2	L1	chr10Lx2115199745	NonProperStrand	1	chr17	39847072	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	141653951	141654018	LTR	MTE2b	MaLR	chr5MTE2b141653743	ProperStrand	1	chr6	94216921	94216967	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-inf
chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	106196931	106197861	Low_complexity	AT_rich	Low_complexity	chrXAT_rich106197828	ProperStrand	1	1	-inf
chr7	63917939	63917995	LINE	L1Md_A	L1	chr7L1Md_A63915676	ProperStrand	22	chr7	28822022	28822051	LINE	Lx3C	L1	chr7Lx3C28821181	ProperStrand	34	1	-15.2187
chr10	24824882	24826185	LTR	IAPEz-int	ERVK	chr10IAPEz-int24822751	ProperStrand	1	chr17	39847438	39847528	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	8939157	8939231	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	chr5	103569453	103569506	protein_coding	Mapk10	intron	ENSMUSG00000046709	NonProperStrand	49	1	-9.3582
chr13	114826252	114828295	protein_coding	Arl15	intron	ENSMUSG00000042348	ProperStrand	14	chr3	85577579	85577601	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-12.8959
chr4	102831384	102831484	protein_coding-noncoding	Mier1	utr5	ENSMUSG00000028522	ProperStrand	1	chr4	102831011	102831101	protein_coding	Mier1	intron	ENSMUSG00000028522	ProperStrand	5	1	-inf
chr11	120600083	120600106	LTR	MTD	MaLR	chr11MTD120599982	NonProperStrand	1	chr14	64838470	64838604	protein_coding	Msra	intron	ENSMUSG00000054733	ProperStrand	122	1	-inf
chr5	137374294	137374392	LTR	RLTR11A	ERVK	chr5RLTR11A137373992	NonProperStrand	2	chr1	180024277	180024298	protein_coding	Gm16432	intron	ENSMUSG00000066667	NonProperStrand	5	1	-inf
chr5	124886402	124886424	SINE	B4	B4	chr5B4124886257	ProperStrand	1	chr13	28735656	28735767	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	1	-inf
chr10	19023708	19023809	LINE	Lx2B	L1	chr10Lx2B19023297	NonProperStrand	1	chr10	19023936	19024026	LTR	MTC	MaLR	chr10MTC19023863	NonProperStrand	1	1	-inf
chr17	39846759	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	43254562	43254621	protein_coding	1700021F05Rik	intron	ENSMUSG00000019797	NonProperStrand	4	1	-3.6552
chr6	6193781	6193881	SINE	B1F	Alu	chr6B1F6193785	NonProperStrand	2	chr6	6193914	6194004	SINE	B4A	B4	chr6B4A6193906	NonProperStrand	2	2	-inf
chr17	39846755	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101101001	101101051	SINE	B1_Mur3	Alu	chr11B1_Mur3101100923	ProperStrand	1	1	-inf
chr8	84868074	84868227	protein_coding	Il15	intron	ENSMUSG00000031712	ProperStrand	36	chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.4836
chr17	39847659	39847754	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	55872079	55872127	LTR	RLTR1C	ERV1	chr7RLTR1C55871991	NonProperStrand	1	1	-inf
chr5	146261174	146261235	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	29056149	29056170	protein_coding	Ntm	intron	ENSMUSG00000059974	ProperStrand	39	1	-5.9062
chr17	39847440	39847530	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	53767278	53767294	protein_coding	Man1a	intron	ENSMUSG00000003746	NonProperStrand	4	1	-3.7035
chr6	124715127	124715596	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	chr9	118387687	118387750	protein_coding	Eomes	utr5	ENSMUSG00000032446	NonProperStrand	12	1	-13.5770
chr12	98888514	98888644	SINE	ID_B1	B4	chr12ID_B198888494	NonProperStrand	1	chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	1	-inf
chr17	39846747	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	5420369	5420443	SINE	B1F1	Alu	chr11B1F15420332	ProperStrand	1	1	-inf
chr11	95847519	95847609	protein_coding	Igf2bp1	intron	ENSMUSG00000013415	ProperStrand	6	chr2	35609600	35609700	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	1	-12.4284
chr11	70397029	70397057	protein_coding	Mink1	intron	ENSMUSG00000020827	NonProperStrand	53	chr1	133055909	133056000	protein_coding	Eif2d	intron	ENSMUSG00000026427	ProperStrand	17	1	-14.8313
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr5	21799433	21799461	protein_coding	Reln	intron	ENSMUSG00000042453	NonProperStrand	79	1	-6.0281
chr11	97217309	97217399	SINE	PB1	Alu	chr11PB197217270	ProperStrand	1	chr11	97217068	97217168	SINE	PB1D10	Alu	chr11PB1D1097217047	ProperStrand	1	1	-inf
chr15	50730164	50730264	LTR	RMER17C	ERVK	chr15RMER17C50730153	ProperStrand	3	chr15	50719562	50719652	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	1	-18.4816
chr1	171111606	171111642	LINE	L1Md_F2	L1	chr1L1Md_F2171111518	ProperStrand	1	chr17	39847550	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	85214689	85214779	protein_coding-noncoding	Sfxn5	utr3	ENSMUSG00000033720	ProperStrand	2	chr6	85214529	85214629	protein_coding	Sfxn5	intron	ENSMUSG00000033720	ProperStrand	81	2	-inf
chr12	86453951	86454011	protein_coding	Dlst	intron	ENSMUSG00000004789	NonProperStrand	77	chr18	5315841	5315913	protein_coding	Zfp438	intron	ENSMUSG00000050945	ProperStrand	23	1	-13.4661
chr13	29530341	29530441	protein_coding	Cdkal1	intron	ENSMUSG00000006191	NonProperStrand	21	chr13	29843062	29843152	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	1	-10.0695
chr2	65649105	65649195	DNA	Charlie1a	MER1_type	chr2Charlie1a65648982	ProperStrand	1	chr2	65648819	65648919	LTR	ORR1D1	MaLR	chr2ORR1D165648688	ProperStrand	1	1	-inf
chr9	97100083	97100154	LINE	Lx8	L1	chr9Lx897100014	ProperStrand	9	chr7	127521496	127521545	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	118	1	-14.5524
chr12	59040423	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr9	21827309	21827354	protein_coding	Elavl3	intron	ENSMUSG00000003410	ProperStrand	162	2	-12.8299
chr10	128720505	128720639	LINE	L1Md_F2	L1	chr10L1Md_F2128719820	NonProperStrand	1	chr10	40299657	40299680	protein_coding	Slc22a16	intron	ENSMUSG00000019834	NonProperStrand	68	1	-inf
chr2	168312497	168312550	protein_coding	Nfatc2	intron	ENSMUSG00000027544	NonProperStrand	34	chr2	180704569	180704620	protein_coding	Arfgap1	intron	ENSMUSG00000027575	NonProperStrand	57	1	-13.2743
chr4	86928610	86928629	LTR	ORR1B1	MaLR	chr4ORR1B186928275	NonProperStrand	1	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-inf
chr14	120278151	120278241	LINE	Lx8	L1	chr14Lx8120277658	NonProperStrand	5	chr14	120278335	120278435	LINE	Lx8	L1	chr14Lx8120278267	NonProperStrand	2	1	-23.2669
chr17	39847715	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	97080205	97080286	protein_coding	Rpl7a-ps10	exon	ENSMUSG00000070289	NonProperStrand	2	1	-5.4040
chr8	71969205	71969323	LINE	Lx5	L1	chr8Lx571969027	ProperStrand	4	chr17	39846968	39846995	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr17	39847207	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	23571416	23576134	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	6	-7.6426
chr1	79724753	79726661	protein_coding-noncoding	Wdfy1	utr3	ENSMUSG00000073643	ProperStrand	1	chr1	79726674	79729703	protein_coding	Wdfy1	intron	ENSMUSG00000073643	ProperStrand	46	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr7	13030906	13031002	pseudogene	Vmn2r-ps53	.	ENSMUSG00000092583	ProperStrand	40	1	-6.7740
chr1	38038126	38038226	LTR	ORR1B1	MaLR	chr1ORR1B138038046	ProperStrand	1	chr1	38038460	38038550	Simple_repeat	(TTC)n	Simple_repeat	chr1(TTC)n38038455	NonProperStrand	1	1	-inf
chr5	124545200	124545258	protein_coding	Abcb9	intron	ENSMUSG00000029408	NonProperStrand	7	chr4	41756059	41756076	pseudogene	Gm10601	.	ENSMUSG00000082962	NonProperStrand	1	1	-inf
chr13	97190563	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr9	15316570	15316639	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-3.6402
chr18	5012645	5012717	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr1	89995534	89995578	protein_coding	Ugt1a10	intron	ENSMUSG00000090165	ProperStrand	4	1	-14.7621
chr18	80909630	80909669	protein_coding	Nfatc1	utr5	ENSMUSG00000033016	ProperStrand	40	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.6618
chr10	3994198	3994644	LINE	L1Md_F3	L1	chr10L1Md_F33990943	NonProperStrand	31	chr5	34352315	34352937	protein_coding	Poln	intron	ENSMUSG00000045102	NonProperStrand	133	4	-inf
chr8	27171629	27171679	protein_coding	Hook3	intron	ENSMUSG00000037234	ProperStrand	117	chr13	97190573	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.8497
chr16	11115935	11115980	protein_coding	Txndc11	utr3	ENSMUSG00000022498	ProperStrand	30	chr18	5308659	5308758	protein_coding	Zfp438	intron	ENSMUSG00000050945	ProperStrand	23	2	-inf
chr17	39846886	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	32231662	32231699	SINE	B1_Mus1	Alu	chr11B1_Mus132231562	NonProperStrand	3	1	-4.3017
chr2	52111790	52111880	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	chr17	33823282	33824437	protein_coding	Hnrnpm	utr5	ENSMUSG00000059208	ProperStrand	59	1	-10.3988
chr1	177448119	177448210	LINE	L1Md_F2	L1	chr1L1Md_F2177448110	NonProperStrand	1	chr19	4808077	4808123	protein_coding	Rbm14	intron	ENSMUSG00000006456	ProperStrand	194	1	-inf
chr10	24884347	24884437	LTR	RMER17A	ERVK	chr10RMER17A24884184	ProperStrand	4	chr10	24884501	24884601	Simple_repeat	(TC)n	Simple_repeat	chr10(TC)n24884465	ProperStrand	4	4	-inf
chr16	16894871	16894922	LTR	MTE2b	MaLR	chr16MTE2b16894844	NonProperStrand	1	chr16	16892680	16892729	protein_coding	Top3b	exon	ENSMUSG00000022779	ProperStrand	22	1	-inf
chr1	164472326	164472426	protein_coding-noncoding	Mettl13	utr3	ENSMUSG00000026694	ProperStrand	2	chr1	164472429	164472519	protein_coding	Mettl13	exon	ENSMUSG00000026694	ProperStrand	4	2	-inf
chr12	67660122	67660222	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	chr12	90033482	90033572	protein_coding	Nrxn3	utr5	ENSMUSG00000066392	NonProperStrand	182	1	-9.3489
chr17	39846352	39847919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	6415881	6419779	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	11	-3.8118
chr9	63228860	63228918	LINE	L1MB2	L1	chr9L1MB263228540	ProperStrand	2	chr9	63228200	63228289	LTR	ORR1B2	MaLR	chr9ORR1B263228180	NonProperStrand	8	1	-23.4058
chr13	21780422	21780452	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr6	67286151	67286222	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	1	-10.2297
chr7	144881067	144881157	LINE	L1M5	L1	chr7L1M5144880735	NonProperStrand	1	chr7	144881966	144882066	LTR	RMER13A	ERVK	chr7RMER13A144881990	ProperStrand	1	1	-inf
chr13	44884726	44884780	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	chr9	3666529	3666617	protein_coding	Gucy1a2	intron	ENSMUSG00000041624	ProperStrand	26	1	-10.5147
chr17	28434076	28434113	protein_coding	Ppard	exon	ENSMUSG00000002250	NonProperStrand	104	chr7	133109494	133109607	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-4.1280
chr5	115489521	115489602	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr15	83641059	83641081	protein_coding	Mpped1	intron	ENSMUSG00000041708	NonProperStrand	7	1	-13.5811
chr17	39846693	39846723	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	180332676	180332692	LTR	ORR1C1	MaLR	chr1ORR1C1180332501	ProperStrand	1	1	-inf
chr10	4354050	4354098	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr10	4266444	4266502	LINE	L1_Mus3	L1	chr10L1_Mus34266383	ProperStrand	20	1	-11.9913
chr11	86975416	86975554	protein_coding	Trim37	intron	ENSMUSG00000018548	NonProperStrand	72	chr19	11783129	11785398	protein_coding	Gm97	intron	ENSMUSG00000055933	NonProperStrand	8	1	-15.7905
chr3	37845544	37845660	LINE	L1Md_F2	L1	chr3L1Md_F237843607	NonProperStrand	1	chr4	150594674	150594709	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-inf
chr13	98878392	98878421	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr15	83149671	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-8.6388
chr4	137529555	137531690	SINE	B2_Mm2	B2	chr4B2_Mm2137531616	NonProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr13	6593850	6593919	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr3	96463969	96464045	protein_coding	Itga10	intron	ENSMUSG00000090210	NonProperStrand	3	1	-17.0858
chr8	13416897	13416915	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	13	chr12	79433006	79433105	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-10.0130
chr7	96229372	96229459	LINE	Lx2	L1	chr7Lx296228922	ProperStrand	2	chr7	96229866	96229924	LTR	MTC	MaLR	chr7MTC96229846	ProperStrand	2	1	-19.8939
chr2	87857665	87857755	LINE	L1Md_F3	L1	chr2L1Md_F387857690	NonProperStrand	1	chr2	87857437	87857537	LINE	L1Md_T	L1	chr2L1Md_T87855237	ProperStrand	1	1	-inf
chr1	149653425	149653442	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int149652500	ProperStrand	16	chr2	79635561	79635695	protein_coding	Ppp1r1c	intron	ENSMUSG00000034683	NonProperStrand	6	1	-20.2004
chr15	77778512	77778540	protein_coding	Foxred2	intron	ENSMUSG00000016552	ProperStrand	71	chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	1	-11.8594
chr6	3201479	3201533	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	57133140	57133184	protein_coding	Tomm70a	intron	ENSMUSG00000022752	ProperStrand	50	1	-3.2230
chr7	131763452	131763556	LTR	MLT1H-int	MaLR	chr7MLT1H-int131763346	NonProperStrand	1	chr4	140929326	140929370	protein_coding	Fam131c	intron	ENSMUSG00000006218	ProperStrand	6	1	-inf
chr1	39910872	39910926	DNA	Charlie5	MER1_type	chr1Charlie539910847	NonProperStrand	1	chr14	19278151	19278195	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-inf
chr10	4095605	4095663	LINE	L1_Mus1	L1	chr10L1_Mus14090288	NonProperStrand	2	chr6	116081504	116081528	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	1	-20.1703
chr8	27054030	27054088	LTR	MTA_Mm	MaLR	chr8MTA_Mm27053879	ProperStrand	1	chr7	127194075	127194211	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	147	1	-inf
chr3	65225043	65225133	SINE	B3	B2	chr3B365224973	NonProperStrand	1	chr3	65224734	65224834	SINE	B3A	B2	chr3B3A65224753	NonProperStrand	1	1	-inf
chr2	22744415	22744440	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	44375664	44375726	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n44375657	NonProperStrand	1	1	-inf
chr13	68561992	68562067	LINE	L1Md_A	L1	chr13L1Md_A68559705	ProperStrand	3	chr17	39846453	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chrX	106160463	106160493	lincRNA	2810403D21Rik	intron	ENSMUSG00000086629	NonProperStrand	3	chr3	65958712	65958815	protein_coding	Veph1	intron	ENSMUSG00000027831	NonProperStrand	9	1	-21.6921
chr17	39843935	39844025	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr19	17184780	17184880	protein_coding	Prune2	intron	ENSMUSG00000039126	ProperStrand	33	1	-5.1355
chr13	44743590	44743687	SINE	PB1D10	Alu	chr13PB1D1044743581	ProperStrand	1	chr2	5549068	5549120	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr8	85338327	85338417	LINE	Lx5	L1	chr8Lx585337956	NonProperStrand	1	chr8	85338478	85338577	LINE	Lx8	L1	chr8Lx885338496	ProperStrand	1	1	-inf
chr7	47188373	47188473	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	chr8	19986588	19986678	pseudogene	2610005L07Rik	.	ENSMUSG00000071793	ProperStrand	4	1	-21.7292
chr12	28710345	28710384	LINE	Lx2	L1	chr12Lx228710279	ProperStrand	1	chr12	28711674	28711726	LINE	Lx2	L1	chr12Lx228710498	ProperStrand	8	1	-inf
chr10	49722247	49722347	LINE	L1Md_F2	L1	chr10L1Md_F249722134	ProperStrand	2	chr10	49722041	49722131	LINE	Lx5	L1	chr10Lx549721466	ProperStrand	1	1	-inf
chr7	30586999	30587632	LTR	MTB	MaLR	chr7MTB30587273	NonProperStrand	2	chr7	30588199	30588451	LTR	MurERV4_19-int	ERVK	chr7MurERV4_19-int30587792	NonProperStrand	4	2	-inf
chrX	74223497	74223554	LINE	L1Md_F2	L1	chrXL1Md_F274223057	NonProperStrand	1	chrX	74223735	74223802	LINE	L1Md_F2	L1	chrXL1Md_F274223617	NonProperStrand	7	1	-inf
chr17	39846580	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	105922648	105922665	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	1	-3.1907
chr17	35834822	35834881	protein_coding	Ddr1	utr5	ENSMUSG00000003534	ProperStrand	232	chr7	24207602	24207636	protein_coding	Nlrp5	intron	ENSMUSG00000015721	NonProperStrand	13	1	-12.4274
chr9	37497136	37497184	LINE	Lx8	L1	chr9Lx837497125	NonProperStrand	4	chr2	140129242	140138937	protein_coding	Sel1l2	intron	ENSMUSG00000074764	ProperStrand	15	1	-inf
chr8	64723700	64723717	LINE	L1Md_T	L1	chr8L1Md_T64723026	NonProperStrand	1	chr8	78179802	78179930	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-inf
chr17	64078901	64133466	LINE	L1_Mm	L1	chr17L1_Mm64078624	ProperStrand	10	chr14	27345402	27345492	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	1	-13.3660
chr17	39847284	39847341	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	98796433	98796500	protein_coding	Taf1	utr3	ENSMUSG00000031314	NonProperStrand	3	1	-5.4882
chr3	115555191	115555281	LINE	L1_Mus3	L1	chr3L1_Mus3115554985	NonProperStrand	1	chr3	115224017	115224117	LTR	RMER12	ERVK	chr3RMER12115223923	NonProperStrand	1	1	-inf
chr15	80078544	80078589	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr7	68323231	68323296	protein_coding	A230006K03Rik	intron	ENSMUSG00000078690	NonProperStrand	20	1	-10.3086
chr7	128545974	128546029	protein_coding	Hs3st2	intron	ENSMUSG00000046321	ProperStrand	15	chr13	97190559	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.8902
chr11	108221056	108221152	protein_coding	Apoh	intron	ENSMUSG00000000049	NonProperStrand	36	chr12	67665482	67665531	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-12.4764
chr18	74778686	74778734	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	68	chr3	22078138	22078189	protein_coding	Tbl1xr1	utr5	ENSMUSG00000027630	ProperStrand	100	1	-10.7441
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	34002849	34002963	protein_coding	Tspyl1	exon	ENSMUSG00000047514	NonProperStrand	2	2	-inf
chrX	60120976	60120995	LINE	L1Md_A	L1	chrXL1Md_A60118743	ProperStrand	2	chr9	123462009	123462114	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr4	142141564	142141581	LTR	ORR1C2	MaLR	chr4ORR1C2142141402	NonProperStrand	1	chr4	142141675	142143297	SINE	B4	B4	chr4B4142141675	ProperStrand	1	1	-inf
chr19	40412075	40412180	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	chr16	16914715	16914733	protein_coding	Ppm1f	intron	ENSMUSG00000026181	ProperStrand	31	1	-10.5436
chr1	87954528	87954618	SINE	ID_B1	B4	chr1ID_B187954519	NonProperStrand	1	chr1	87948393	87948493	protein_coding	2810459M11Rik	intron	ENSMUSG00000026227	ProperStrand	5	1	-inf
chr1	156438555	156438652	protein_coding	Cacna1e	intron	ENSMUSG00000004110	ProperStrand	66	chr13	44869626	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.3108
chr13	111453226	111453425	LINE	L1_Mus4	L1	chr13L1_Mus4111449199	NonProperStrand	11	chr4	41394953	41395037	protein_coding	Kif24	intron	ENSMUSG00000028438	ProperStrand	26	1	-17.2005
chr8	43180186	43180269	LINE	Lx5	L1	chr8Lx543179934	ProperStrand	1	chr4	107728890	107728909	protein_coding	Scp2	intron	ENSMUSG00000028603	NonProperStrand	43	1	-inf
chr14	120337454	120337519	LINE	L1Md_F	L1	chr14L1Md_F120332944	ProperStrand	9	chr15	82152838	82152893	SINE	PB1D7	Alu	chr15PB1D782152851	ProperStrand	1	1	-inf
chr15	89171987	89172101	LINE	Lx6	L1	chr15Lx689171252	ProperStrand	3	chr11	68362119	68362162	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-16.4721
chr8	105524862	105524888	LINE	L1MCa	L1	chr8L1MCa105524744	NonProperStrand	4	chr17	39847981	39848022	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr10	61452512	61452554	LINE	Lx5	L1	chr10Lx561452463	NonProperStrand	3	chr17	39847277	39847344	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr10	40258626	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	136250733	136250823	protein_coding	Ephb2	intron	ENSMUSG00000028664	NonProperStrand	64	1	-5.2310
chr17	39847988	39848056	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	118404353	118404436	SINE	B3	B2	chr9B3118404336	ProperStrand	1	1	-inf
chrX	75451315	75451441	LINE	L1Md_F2	L1	chrXL1Md_F275451211	NonProperStrand	2	chr5	146261274	146261304	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-15.3270
chr5	115151432	115151533	LTR	RMER12B	ERVK	chr5RMER12B115151420	NonProperStrand	1	chr5	115151629	115151719	SINE	B2_Mm2	B2	chr5B2_Mm2115151566	ProperStrand	1	1	-inf
chr2	83652184	83652209	SINE	B1_Mur2	Alu	chr2B1_Mur283652116	NonProperStrand	1	chr8	111574671	111574792	SINE	B4A	B4	chr8B4A111574678	ProperStrand	1	1	-inf
chr9	123461931	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	75862476	75863415	protein_coding	K230010J24Rik	intron	ENSMUSG00000075594	ProperStrand	9	1	-4.5963
chr11	77803332	77803415	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.1515
chr8	114733163	114733213	LTR	MTC	MaLR	chr8MTC114733102	ProperStrand	5	chr8	114726181	114726224	LTR	ORR1D2	MaLR	chr8ORR1D2114725939	ProperStrand	1	1	-inf
chr2	22744854	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	126765688	126765785	protein_coding	Acsm1	intron	ENSMUSG00000033533	ProperStrand	43	1	-7.4724
chr17	33982334	33982434	protein_coding	Cd320	intron	ENSMUSG00000002308	NonProperStrand	3	chr17	35389684	35389774	protein_coding	Ddx39b	exon	ENSMUSG00000019432	ProperStrand	28	1	-19.7481
chrX	78363077	78363096	LTR	ORR1A0	MaLR	chrXORR1A078362941	NonProperStrand	1	chr1	191537392	191537425	SINE	PB1D7	Alu	chr1PB1D7191537318	ProperStrand	2	1	-inf
chr17	84620255	84620326	protein_coding	Thada	intron	ENSMUSG00000024251	NonProperStrand	14	chr8	25726425	25726472	protein_coding	Adam18	intron	ENSMUSG00000031552	NonProperStrand	14	1	-17.7319
chr5	140009116	140009166	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n140009117	NonProperStrand	1	chr9	123462082	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	18758548	18758570	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr3	88800987	88801086	protein_coding	Ash1l	intron	ENSMUSG00000028053	ProperStrand	44	1	-10.5815
chr2	154671421	154671475	protein_coding	Raly	intron	ENSMUSG00000027593	ProperStrand	47	chr5	31201155	31201219	protein_coding	Agbl5	intron	ENSMUSG00000029165	NonProperStrand	37	1	-13.4933
chr13	49356489	49356589	LTR	MTEb-int	MaLR	chr13MTEb-int49355195	ProperStrand	3	chr13	49356893	49356983	LTR	MTEb	MaLR	chr13MTEb49356854	ProperStrand	1	1	-inf
chr7	135694729	135694782	DNA	Tigger5	MER2_type	chr7Tigger5135694669	NonProperStrand	4	chr11	51601749	51601792	protein_coding	Sar1b	intron	ENSMUSG00000020386	ProperStrand	8	2	-inf
chr8	124431805	124432251	antisense	BC048644	.	ENSMUSG00000074052	NonProperStrand	24	chr8	124429983	124431064	protein_coding	Slc7a5	intron	ENSMUSG00000040010	ProperStrand	56	2	-20.8614
chr17	39848598	39848716	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr14	55634362	55634378	protein_coding	Ngdn	utr5	ENSMUSG00000022204	NonProperStrand	18	1	-3.8260
chr2	90395156	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr6	143138924	143139026	protein_coding	Etnk1	intron	ENSMUSG00000030275	NonProperStrand	4	1	-15.4110
chr6	26942721	26942811	LINE	L1Md_F	L1	chr6L1Md_F26942389	ProperStrand	1	chr6	27976552	27976652	protein_coding	Grm8	intron	ENSMUSG00000024211	NonProperStrand	26	1	-inf
chr1	150400649	150400749	LINE	L1Md_T	L1	chr1L1Md_T150400406	ProperStrand	3	chr1	150400289	150400379	LINE	L1_Mus3	L1	chr1L1_Mus3150400006	ProperStrand	1	1	-inf
chr14	118638221	118638354	lincRNA	Gm4675	intron	ENSMUSG00000090534	NonProperStrand	19	chr1	163779807	163779825	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	19	2	-19.5725
chr17	39847160	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	167226022	167226054	LTR	MT2C_Mm	ERVL	chr1MT2C_Mm167225624	NonProperStrand	4	1	-4.8204
chr8	25817014	25817098	protein_coding	Adam3	intron	ENSMUSG00000031553	ProperStrand	67	chr17	30882307	30882381	protein_coding	Dnahc8	intron	ENSMUSG00000033826	NonProperStrand	32	1	-13.0713
chr7	19257692	19258808	LTR	ORR1A2-int	MaLR	chr7ORR1A2-int19256896	NonProperStrand	19	chr7	19257895	19258990	LTR	ORR1A2	MaLR	chr7ORR1A219258760	NonProperStrand	11	11	-inf
chr17	39846600	39846715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	127216068	127216168	LTR	MTD-int	MaLR	chr2MTD-int127216036	ProperStrand	5	2	-5.8332
chr15	57967334	57967421	LTR	RLTR19-int	ERVK	chr15RLTR19-int57967208	ProperStrand	1	chr15	57965094	57965140	protein_coding	Atad2	intron	ENSMUSG00000022360	NonProperStrand	53	1	-inf
chr3	68573221	68573279	LINE	Lx5	L1	chr3Lx568573124	NonProperStrand	4	chr1	122357166	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	1	-14.5895
chr17	39847277	39847293	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	6335900	6336841	protein_coding	Men1	exon	ENSMUSG00000024947	ProperStrand	5	1	-4.3348
chr11	72445663	72445680	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	chr7	133101686	133101774	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-4.0921
chr17	39847611	39847738	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	10908304	10908384	LTR	MTC	MaLR	chr19MTC10907968	ProperStrand	2	2	-inf
chr6	120777595	120777685	DNA	RCHARR1	MER1_type	chr6RCHARR1120777196	NonProperStrand	2	chr6	120777694	120777794	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n120777673	ProperStrand	2	2	-inf
chr17	70963679	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr15	53133647	53133677	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	1	-4.9046
chr16	22392678	22392779	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr7	127582804	127582864	protein_coding	Abca16	exon	ENSMUSG00000051900	ProperStrand	96	1	-8.1444
chr2	147187581	147187681	antisense	AI646519	.	ENSMUSG00000087521	NonProperStrand	1	chr10	85896220	85896310	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	1	-inf
chr17	39848625	39848745	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr10	80867458	80867476	protein_coding	Nfic	intron	ENSMUSG00000055053	ProperStrand	12	2	-7.7740
chr1	118811381	118811452	LINE	Lx2B	L1	chr1Lx2B118810931	ProperStrand	2	chr7	73486222	73486278	protein_coding	Lrrk1	intron	ENSMUSG00000015133	ProperStrand	120	2	-inf
chr4	59217082	59217171	protein_coding	Ugcg	intron	ENSMUSG00000028381	ProperStrand	11	chr8	85785823	85785842	protein_coding	Tbc1d9	intron	ENSMUSG00000031709	ProperStrand	5	1	-21.1483
chr12	73585177	73585196	protein_coding	Lrrc9	intron	ENSMUSG00000021090	ProperStrand	9	chr12	73759613	73759735	protein_coding	Dhrs7	intron	ENSMUSG00000021094	NonProperStrand	3	1	-21.0885
chr5	33518529	33518568	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr14	8534338	8534387	LTR	IAPEz-int	ERVK	chr14IAPEz-int8527981	ProperStrand	1	1	-inf
chr8	121677142	121677232	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	chr8	121700737	121700837	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	1	-7.6807
chr6	48739636	48739736	LINE	Lx9	L1	chr6Lx948739484	ProperStrand	2	chr6	48739849	48739939	LINE	Lx9	L1	chr6Lx948739646	ProperStrand	2	2	-inf
chr17	39846658	39846713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	111041188	111041254	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n111041192	ProperStrand	1	1	-inf
chr17	39846462	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	128739232	128739272	snoRNA	ENSMUSG00000077280_SNORA17	.	ENSMUSG00000077280	NonProperStrand	1	1	-inf
chr17	45570770	45571454	lincRNA	B230354K17Rik	exon	ENSMUSG00000073393	NonProperStrand	85	chr13	97190561	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-7.4084
chr6	3201474	3201531	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr3	132987408	132987426	protein_coding	Ppa2	intron	ENSMUSG00000028013	NonProperStrand	29	1	-4.2407
chr19	23927423	23927524	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	chr11	86531940	86531990	protein_coding	Cltc	intron	ENSMUSG00000047126	ProperStrand	35	1	-11.0442
chr1	168354798	168354892	LINE	L1Md_T	L1	chr1L1Md_T168348652	ProperStrand	5	chr1	168239987	168240039	protein_coding	Ildr2	intron	ENSMUSG00000040612	NonProperStrand	14	1	-20.0849
chr8	34591899	34591916	LTR	ORR1D2	MaLR	chr8ORR1D234591887	ProperStrand	1	chr12	88196009	88196025	SINE	B1_Mur3	Alu	chr12B1_Mur388195987	NonProperStrand	2	1	-inf
chr19	45005700	45005806	protein_coding	Fam178a	utr5	ENSMUSG00000036097	NonProperStrand	21	chr13	81752566	81752583	protein_coding	Gpr98	intron	ENSMUSG00000069170	NonProperStrand	35	1	-15.2439
chr19	27396317	27398916	Simple_repeat	(TC)n	Simple_repeat	chr19(TC)n27396312	NonProperStrand	3	chr19	27398937	27399027	protein_coding	Kcnv2	intron	ENSMUSG00000047298	NonProperStrand	20	3	-inf
chr15	77227286	77227352	LTR	MT2B	ERVL	chr15MT2B77227227	NonProperStrand	2	chr15	77226293	77226369	protein_coding	Apol7a	intron	ENSMUSG00000010601	ProperStrand	19	2	-inf
chr5	31646115	31646206	LINE	L1_Mus2	L1	chr5L1_Mus231643800	NonProperStrand	1	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-inf
chr11	17221334	17221367	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr4	41349075	41349152	protein_coding	Kif24	intron	ENSMUSG00000028438	NonProperStrand	51	1	-13.5604
chr17	39846467	39846497	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	32583445	32583518	SINE	ID_B1	B4	chr3ID_B132583302	NonProperStrand	1	1	-inf
chr5	105796854	105796944	LTR	MYSERV-int	ERVK	chr5MYSERV-int105796763	NonProperStrand	1	chr5	105796464	105796564	LTR	RLTR13A2	ERVK	chr5RLTR13A2105795801	NonProperStrand	1	1	-inf
chr17	25978371	25978504	protein_coding	Rhot2	intron	ENSMUSG00000025733	ProperStrand	13	chr11	88549956	88549980	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-9.3519
chr4	140556387	140556468	protein_coding	Atp13a2	intron	ENSMUSG00000036622	NonProperStrand	4	chr5	114597094	114597153	protein_coding	Acacb	intron	ENSMUSG00000042010	NonProperStrand	38	1	-18.8346
chr14	34751002	34751081	LINE	L1MA5	L1	chr14L1MA534751006	ProperStrand	1	chr9	123461839	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr19	5797606	5797633	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	mmu-miR-6238	2	19	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	1	-6.4071
chr16	4911427	4913697	protein_coding	Mgrn1	exon	ENSMUSG00000022517	ProperStrand	49	chr11	54946826	54946865	protein_coding	Slc36a3	intron	ENSMUSG00000049491	ProperStrand	154	1	-10.5386
chr5	65189991	65190091	LTR	ORR1D2	MaLR	chr5ORR1D265189952	NonProperStrand	1	chr5	65190364	65190454	LTR	RMER6C	ERVK	chr5RMER6C65190096	ProperStrand	1	1	-inf
chr3	6138374	6138474	LTR	IAPLTR2b	ERVK	chr3IAPLTR2b6138248	NonProperStrand	1	chr9	122137199	122137289	protein_coding	Ano10	intron	ENSMUSG00000037949	ProperStrand	26	1	-inf
chr14	59503080	59503155	LINE	L1Md_F2	L1	chr14L1Md_F259501747	NonProperStrand	1	chr17	39847444	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	38588170	38588279	protein_coding-noncoding	Tmem39a	utr5	ENSMUSG00000002845	ProperStrand	2	chr1	189652605	189652634	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	103	1	-18.2318
chr2	5172266	5172356	LTR	ORR1A2	MaLR	chr2ORR1A25172184	ProperStrand	1	chr3	158565755	158565855	LTR	MTA_Mm	MaLR	chr3MTA_Mm158565584	NonProperStrand	1	1	-inf
chr8	95865030	95865091	LINE	Lx5	L1	chr8Lx595864721	NonProperStrand	11	chr12	54696895	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-13.8470
chr13	102173413	102173432	LTR	RLTR17	ERVK	chr13RLTR17102173355	ProperStrand	1	chr17	39847380	39847409	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847187	39847248	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	34809457	34810309	protein_coding-noncoding	Cdc23	utr3	ENSMUSG00000024370	NonProperStrand	9	1	-3.1539
chr1	71603845	71605023	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	chr19	8252253	8252274	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	10	1	-15.1409
chr9	123462032	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	104531460	104531498	protein_coding	Gm17662	intron	ENSMUSG00000091038	ProperStrand	6	1	-5.4370
chr17	83421746	83421819	LINE	L1MA5	L1	chr17L1MA583421703	NonProperStrand	1	chr17	39843617	39843692	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr10	12652827	12652920	LINE	Lx8	L1	chr10Lx812652185	ProperStrand	1	chr10	12642020	12642058	lincRNA	B230208H11Rik	intron	ENSMUSG00000085233	ProperStrand	5	1	-inf
chr19	13109291	13109391	LINE	L1_Mus3	L1	chr19L1_Mus313109095	ProperStrand	1	chr5	110363725	110363815	protein_coding	Gm15446	intron	ENSMUSG00000090015	NonProperStrand	24	1	-inf
chr2	18206049	18206149	protein_coding	Dnajc1	intron	ENSMUSG00000026740	NonProperStrand	79	chr8	119536613	119536703	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	121	2	-15.9032
chr17	39848465	39848535	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	3521371	3521523	protein_coding	Pnpla6	exon	ENSMUSG00000004565	ProperStrand	27	2	-5.3295
chrX	13287342	13287485	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	chr13	112507124	112507200	protein_coding	Mier3	utr3	ENSMUSG00000032727	ProperStrand	63	2	-15.7514
chr1	118928019	118928064	LINE	Lx7	L1	chr1Lx7118926296	ProperStrand	27	chr1	118921557	118921592	SINE	B4	B4	chr1B4118921457	ProperStrand	1	1	-inf
chr6	62576176	62576266	LINE	L1_Mus2	L1	chr6L1_Mus262575616	NonProperStrand	1	chr6	62576591	62576692	LINE	L1_Mus2	L1	chr6L1_Mus262576469	ProperStrand	1	1	-inf
chr14	12021255	12021356	LINE	L1ME4a	L1	chr14L1ME4a12021210	ProperStrand	1	chr5	141537463	141537481	LINE	L1_Mur2	L1	chr5L1_Mur2141537373	NonProperStrand	1	1	-inf
chr16	14398799	14398873	protein_coding	Abcc1	intron	ENSMUSG00000023088	ProperStrand	122	chr6	37179352	37179424	protein_coding	Dgki	intron	ENSMUSG00000038665	ProperStrand	44	1	-11.2224
chr2	61763899	61764893	LINE	L1_Mur3	L1	chr2L1_Mur361764811	NonProperStrand	4	chr2	61761020	61761083	SINE	B1_Mus2	Alu	chr2B1_Mus261760921	NonProperStrand	3	2	-inf
chr2	132724743	132724782	Simple_repeat	(CCCTAA)n	Simple_repeat	chr2(CCCTAA)n132724407	ProperStrand	1	chr7	99967828	99967883	protein_coding	Rab30	intron	ENSMUSG00000030643	NonProperStrand	209	1	-inf
chr5	30060659	30060770	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr7	103550456	103550862	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	2	-inf
chr4	55381051	55382504	protein_coding-noncoding	Rad23b	utr5	ENSMUSG00000028426	ProperStrand	5	chr4	55382531	55383602	protein_coding	Rad23b	intron	ENSMUSG00000028426	ProperStrand	31	1	-18.5741
chr17	39846718	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	8912813	8914935	protein_coding	Bscl2	intron	ENSMUSG00000071657	ProperStrand	17	3	-3.6562
chr4	126799500	126799564	protein_coding	Zmym6	intron	ENSMUSG00000042408	ProperStrand	3	chr13	97190562	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr19	41481276	41481376	LINE	L1_Mus1	L1	chr19L1_Mus141480692	NonProperStrand	1	chr19	41481584	41481674	LINE	L1_Mus1	L1	chr19L1_Mus141481557	NonProperStrand	1	1	-inf
chr2	160384290	160384380	SINE	PB1D10	Alu	chr2PB1D10160384272	ProperStrand	1	chr2	160384459	160384559	SINE	RSINE1	B4	chr2RSINE1160384397	ProperStrand	1	1	-inf
chr11	21327884	21327984	SINE	ID_B1	B4	chr11ID_B121327892	NonProperStrand	1	chr18	56731760	56731850	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	96	1	-inf
chr19	45968931	45968960	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	chr5	109722174	109722269	protein_coding	Vmn2r15	exon	ENSMUSG00000091375	ProperStrand	3	1	-16.5723
chr2	5379307	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-4.6132
chr2	93976840	93976859	protein_coding	Hsd17b12	intron	ENSMUSG00000027195	ProperStrand	58	chr4	151703217	151703305	protein_coding	Rpl22	intron	ENSMUSG00000028936	NonProperStrand	2	1	-18.9861
chrX	15614718	15614808	LINE	L1Md_F2	L1	chrXL1Md_F215614729	ProperStrand	1	chrX	15614558	15614658	LTR	MTD	MaLR	chrXMTD15614520	ProperStrand	1	1	-inf
chr8	104521573	104521643	LINE	Lx9	L1	chr8Lx9104521300	ProperStrand	1	chr9	123462036	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	95099518	95099608	protein_coding	Slc9a9	intron	ENSMUSG00000031129	NonProperStrand	17	chr9	95100903	95101003	protein_coding	Slc9a9	intron	ENSMUSG00000031129	ProperStrand	16	1	-17.2697
chr1	131573924	131573952	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	chr14	11758554	11758572	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-4.8748
chr2	10011845	10011945	protein_coding-noncoding	Kin	utr5	ENSMUSG00000037262	NonProperStrand	1	chr2	10012003	10012093	protein_coding	Kin	intron	ENSMUSG00000037262	NonProperStrand	20	1	-inf
chr10	56380786	56380886	LINE	L1MA8	L1	chr10L1MA856380735	NonProperStrand	1	chr10	56380596	56380686	LTR	MLT1D	MaLR	chr10MLT1D56380455	NonProperStrand	1	1	-inf
chr2	112262328	112262465	LTR	MERVL-int	ERVL	chr2MERVL-int112257458	NonProperStrand	7	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-12.2660
chr5	34912047	34912147	SINE	B1_Mur1	Alu	chr5B1_Mur134912074	ProperStrand	1	chr5	34912265	34912355	SINE	B1_Mus1	Alu	chr5B1_Mus134912225	ProperStrand	1	1	-inf
chr7	6716148	6717805	SINE	B4	B4	chr7B46716896	NonProperStrand	4	chr7	6717804	6718431	Simple_repeat	(TTTC)n	Simple_repeat	chr7(TTTC)n6717784	NonProperStrand	4	4	-inf
chr17	36953628	36953718	LTR	RLTR31_Mm	ERVK	chr17RLTR31_Mm36953449	ProperStrand	1	chr17	36953802	36953903	LTR	RMER6D	ERVK	chr17RMER6D36953778	NonProperStrand	1	1	-inf
chr12	89859584	89859684	DNA	MER102a	MER1_type	chr12MER102a89859565	NonProperStrand	1	chr12	89859404	89859494	Low_complexity	GA-rich	Low_complexity	chr12GA-rich89859417	ProperStrand	1	1	-inf
chr15	98853096	98853186	SINE	B2_Mm1a	B2	chr15B2_Mm1a98853102	NonProperStrand	3	chr15	98853006	98853106	SINE	B2_Mm2	B2	chr15B2_Mm298852931	NonProperStrand	1	1	-inf
chr12	24539403	24539440	LTR	RMER10A	ERVL	chr12RMER10A24539327	ProperStrand	2	chr12	24539213	24539296	Simple_repeat	(TTC)n	Simple_repeat	chr12(TTC)n24539147	ProperStrand	2	2	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr2	5379254	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-5.0845
chr13	27997181	27997271	LTR	MTEa-int	MaLR	chr13MTEa-int27996782	ProperStrand	1	chr13	27996648	27996748	LTR	MTEa	MaLR	chr13MTEa27996435	ProperStrand	1	1	-inf
chr10	17124521	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr8	39097855	39097886	protein_coding	Sgcz	intron	ENSMUSG00000039539	NonProperStrand	40	1	-10.6249
chr11	16805164	16805269	protein_coding	Egfr	intron	ENSMUSG00000020122	ProperStrand	16	chr19	8888558	8888597	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	1	-13.0531
chr4	148621983	148622083	protein_coding-noncoding	Kif1b	utr3	ENSMUSG00000063077	ProperStrand	2	chr4	148622079	148625183	protein_coding	Kif1b	intron	ENSMUSG00000063077	ProperStrand	77	2	-inf
chr11	100658714	100658804	protein_coding	Stat5b	intron	ENSMUSG00000020919	ProperStrand	21	chr9	101868346	101868446	protein_coding	Ephb1	intron	ENSMUSG00000032537	ProperStrand	10	1	-17.7681
chr8	23816485	23816575	protein_coding-noncoding	Ikbkb	utr3	ENSMUSG00000031537	NonProperStrand	1	chr8	23816688	23816788	protein_coding	Ikbkb	intron	ENSMUSG00000031537	NonProperStrand	1	1	-inf
chr2	33214633	33214649	protein_coding	Ralgps1	intron	ENSMUSG00000038831	NonProperStrand	9	chr6	71882556	71882693	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-14.3926
chr17	90400783	90400873	LINE	Lx5	L1	chr17Lx590398667	ProperStrand	1	chr17	89249337	89249437	LTR	ORR1C1	MaLR	chr17ORR1C189249332	NonProperStrand	1	1	-inf
chr14	21035243	21035335	LTR	MTD	MaLR	chr14MTD21035073	NonProperStrand	1	chr9	123461965	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	91838176	91838276	protein_coding-noncoding	C130022K22Rik	utr5	ENSMUSG00000034083	NonProperStrand	5	chr6	91838284	91838374	protein_coding	C130022K22Rik	intron	ENSMUSG00000034083	NonProperStrand	10	2	-inf
chr17	39847348	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	180036392	180036459	SINE	B1_Mur1	Alu	chr2B1_Mur1180036307	NonProperStrand	1	1	-inf
chr10	80542550	80542598	protein_coding	Thop1	intron	ENSMUSG00000004929	NonProperStrand	9	chr15	79532344	79532458	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	NonProperStrand	156	5	-20.5409
chr10	62829488	62829521	protein_coding	Sirt1	utr5	ENSMUSG00000020063	ProperStrand	228	chr14	39783431	39783450	protein_coding	Nrg3	intron	ENSMUSG00000041014	NonProperStrand	28	1	-10.8860
chr17	57021841	57021908	protein_coding	1700061G19Rik	intron	ENSMUSG00000024209	NonProperStrand	83	chr11	119293610	119293681	protein_coding	Rnf213	intron	ENSMUSG00000070327	NonProperStrand	25	1	-13.1435
chr4	39983818	39983918	LINE	L1_Mus1	L1	chr4L1_Mus139983757	NonProperStrand	1	chr4	39983589	39983679	LINE	Lx3B	L1	chr4Lx3B39983558	NonProperStrand	1	1	-inf
chr2	118623087	118630024	protein_coding	Disp2	intron	ENSMUSG00000040035	ProperStrand	47	chr13	97190546	97190609	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-9.1613
chr7	13277508	13280149	LINE	L1VL2	L1	chr7L1VL213276556	NonProperStrand	5	chr17	39848099	39848159	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-6.1691
chr3	144430520	144430553	LTR	RLTR17	ERVK	chr3RLTR17144430419	NonProperStrand	1	chr11	33452528	33474929	protein_coding	Gabrp	intron	ENSMUSG00000020159	ProperStrand	24	1	-inf
chr9	123461935	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	72660815	72660888	protein_coding	Smarcal1	intron	ENSMUSG00000039354	ProperStrand	4	1	-6.3300
chr8	70895779	70895879	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr8	123288258	123288349	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-5.5039
chr1	63179077	63179136	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr12	78350923	78351012	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-5.4591
chr17	23806966	23807066	protein_coding	Thoc6	intron	ENSMUSG00000041319	NonProperStrand	57	chr17	23803326	23806949	protein_coding	Ccdc64b	intron	ENSMUSG00000043782	ProperStrand	17	5	-inf
chr16	22946104	22946204	LINE	L1Md_F3	L1	chr16L1Md_F322946125	NonProperStrand	1	chr16	22945837	22945927	SINE	RSINE1	B4	chr16RSINE122945857	ProperStrand	1	1	-inf
chr6	3201505	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	115217324	115217362	protein_coding	Stt3b	intron	ENSMUSG00000032437	NonProperStrand	44	1	-3.4568
chr11	6358065	6358156	SINE	B2_Mm2	B2	chr11B2_Mm26357958	ProperStrand	4	chr2	127024624	127024724	protein_coding	1810024B03Rik	intron	ENSMUSG00000044145	NonProperStrand	6	1	-inf
chr3	116442832	116442932	SINE	B3	B2	chr3B3116442711	ProperStrand	1	chr3	116442560	116442650	SINE	B3A	B2	chr3B3A116442508	ProperStrand	1	1	-inf
chr17	39847608	39847682	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	20562538	20562557	LTR	MTB-int	MaLR	chr19MTB-int20561681	ProperStrand	1	1	-inf
chr6	125194795	125194895	LINE	Lx8	L1	chr6Lx8125194577	NonProperStrand	2	chr6	125194960	125195050	LTR	RMER19B	ERVK	chr6RMER19B125194934	ProperStrand	2	2	-inf
chr5	24896104	24896173	protein_coding	Mll3	intron	ENSMUSG00000038056	NonProperStrand	7	chr11	119285599	119285642	protein_coding	Rnf213	intron	ENSMUSG00000070327	NonProperStrand	25	1	-18.4558
chr17	39846373	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	26786342	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	24	-11.0923
chr13	44869605	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr17	72611189	72611207	protein_coding	Alk	intron	ENSMUSG00000055471	ProperStrand	23	1	-6.3731
chr11	109011810	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	21003096	21003145	protein_coding	Pde4a	intron	ENSMUSG00000032177	ProperStrand	9	1	-9.9559
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr7	26418201	26418280	protein_coding	Bckdha	intron	ENSMUSG00000060376	NonProperStrand	17	1	-8.5018
chr5	146261151	146261189	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	115581984	115582032	protein_coding	BC052040	intron	ENSMUSG00000040282	ProperStrand	31	1	-6.3617
chrX	71256596	71256686	LINE	L1M4	L1	chrXL1M471256459	ProperStrand	1	chrX	71256798	71256898	SINE	B1_Mur2	Alu	chrXB1_Mur271256817	ProperStrand	1	1	-inf
chr17	32933841	32933941	Low_complexity	CT-rich	Low_complexity	chr17CT-rich32933762	NonProperStrand	1	chr17	32933938	32934028	SINE	B1_Mur4	Alu	chr17B1_Mur432933945	ProperStrand	1	1	-inf
chr8	107346161	107346251	LINE	L1Md_T	L1	chr8L1Md_T107343055	NonProperStrand	2	chr17	39846648	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr10	75704412	75704516	SINE	B1_Mur4	Alu	chr10B1_Mur475704411	NonProperStrand	12	chr10	75704281	75704416	SINE	ID_B1	B4	chr10ID_B175704275	NonProperStrand	10	9	-21.2528
chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr16	8559257	8559336	protein_coding	Abat	intron	ENSMUSG00000057880	NonProperStrand	19	1	-6.7578
chr17	39847264	39847331	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	22469004	22469061	Satellite	MMSAT4	Satellite	chr17MMSAT422468987	NonProperStrand	1	1	-inf
chr10	78405259	78405430	LINE	L1Md_T	L1	chr10L1Md_T78403281	NonProperStrand	34	chr10	78401957	78402617	LINE	Lx3_Mus	L1	chr10Lx3_Mus78401747	NonProperStrand	3	1	-19.2628
chr15	59038363	59038440	LTR	MTD	MaLR	chr15MTD59038172	NonProperStrand	1	chr11	107251982	107252036	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-inf
chr4	17704533	17704623	LINE	L1Md_A	L1	chr4L1Md_A17704503	NonProperStrand	1	chr4	17704353	17704453	LTR	ORR1A1-int	MaLR	chr4ORR1A1-int17704276	ProperStrand	1	1	-inf
chrX	73026637	73026693	SINE	B1_Mm	Alu	chrXB1_Mm73026625	ProperStrand	5	chr11	101604956	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-17.6708
chr5	142547168	142547196	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	chr11	35292565	35292615	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-5.6278
chr13	64195934	64195994	SINE	B2_Mm1a	B2	chr13B2_Mm1a64195813	NonProperStrand	1	chr6	47748492	47748574	protein_coding	Pdia4	exon	ENSMUSG00000025823	ProperStrand	3	1	-inf
chr1	36094552	36094581	LTR	MT2_Mm	ERVL	chr1MT2_Mm36094265	ProperStrand	3	chr1	36097338	36097377	LTR	RLTR1B	ERV1	chr1RLTR1B36097259	ProperStrand	7	1	-25.2264
chr17	34952006	34952073	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr4	150526044	150526129	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-6.8430
chr10	8352847	8352958	Simple_repeat	(GAAA)n	Simple_repeat	chr10(GAAA)n8352862	NonProperStrand	1	chr2	90395153	90395183	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-inf
chr2	132249794	132251258	SINE	B3	B2	chr2B3132249765	NonProperStrand	3	chr2	132251288	132253036	lincRNA	4921508D12Rik	intron	ENSMUSG00000027345	NonProperStrand	28	2	-21.4720
chr4	133048874	133049014	protein_coding	Trnp1	intron	ENSMUSG00000056596	NonProperStrand	17	chr4	110620407	110620425	protein_coding	Agbl4	intron	ENSMUSG00000061298	NonProperStrand	47	1	-15.0814
chr10	52319562	52319622	LINE	L1Md_F2	L1	chr10L1Md_F252318927	ProperStrand	1	chr17	39847439	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	3201473	3201526	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	118545809	118545852	protein_coding	Gpr180	intron	ENSMUSG00000022131	NonProperStrand	17	1	-5.2844
chr19	11935795	11937277	LINE	L1_Mus3	L1	chr19L1_Mus311936815	NonProperStrand	1	chr19	11937345	11939749	LINE	Lx8	L1	chr19Lx811939523	ProperStrand	6	1	-inf
chr17	14220148	14220170	LINE	L1Md_F3	L1	chr17L1Md_F314215391	NonProperStrand	2	chr17	39846421	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr15	100629062	100629124	protein_coding	Slc4a8	intron	ENSMUSG00000023032	NonProperStrand	14	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-9.5112
chr18	40792715	40792782	LTR	ORR1B2	MaLR	chr18ORR1B240792534	ProperStrand	6	chr9	123461847	123461924	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr4	120024083	120024183	LINE	L1ME1	L1	chr4L1ME1120024085	ProperStrand	1	chr4	120024337	120024427	SINE	RSINE1	B4	chr4RSINE1120024360	ProperStrand	1	1	-inf
chr7	100834071	100834148	LINE	L1_Mus2	L1	chr7L1_Mus2100832477	ProperStrand	1	chr9	123462081	123462129	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	95348998	95349088	LINE	L1_Mur3	L1	chr12L1_Mur395348981	NonProperStrand	1	chr12	95348717	95348818	LINE	Lx8	L1	chr12Lx895348710	ProperStrand	1	1	-inf
chr9	80399394	80399420	LTR	RMER5	ERV1	chr9RMER580399385	NonProperStrand	6	chr10	128084316	128084431	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	114	1	-15.5005
chrX	103464430	103464559	LINE	L1MD1	L1	chrXL1MD1103464327	NonProperStrand	2	chr19	44303540	44303563	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	1	-17.3078
chr6	28888293	28888393	LINE	L1MC4	L1	chr6L1MC428888263	ProperStrand	2	chr17	39847611	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39847076	39847536	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	149120028	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	75	-inf
chr10	105189059	105189075	LINE	Lx	L1	chr10Lx105188674	ProperStrand	1	chr17	39846721	39846807	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	55303857	55303957	SINE	B1_Mur2	Alu	chr13B1_Mur255303812	ProperStrand	1	chr13	55304010	55304100	SINE	PB1D7	Alu	chr13PB1D755303979	ProperStrand	1	1	-inf
chr17	6782678	6782723	LTR	RLTR1B-int	ERV1	chr17RLTR1B-int6782062	ProperStrand	4	chr13	97190546	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr17	39847100	39847251	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	107462294	107462389	antisense	4933424M12Rik	.	ENSMUSG00000087289	ProperStrand	2	1	-6.5615
chr12	36109754	36109826	LINE	L1VL2	L1	chr12L1VL236109275	NonProperStrand	2	chr17	39846932	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr11	43531263	43531321	protein_coding-noncoding	Pwwp2a	utr5	ENSMUSG00000044950	ProperStrand	2	chr11	43532956	43533023	protein_coding	Pwwp2a	intron	ENSMUSG00000044950	ProperStrand	5	1	-inf
chr11	66537052	66537142	DNA	Tigger15a	TcMar	chr11Tigger15a66536955	ProperStrand	1	chr11	66537171	66537271	DNA	Tigger15a	TcMar	chr11Tigger15a66537128	ProperStrand	1	1	-inf
chr1	123253128	123253228	LTR	MT2A	ERVL	chr1MT2A123253040	ProperStrand	1	chr1	123253446	123253536	SINE	B3	B2	chr1B3123253416	ProperStrand	1	1	-inf
chr9	123462128	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	146125565	146125626	protein_coding	Zfp600	intron	ENSMUSG00000066007	ProperStrand	4	1	-6.3300
chrX	12801863	12801886	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr13	44869576	44869684	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.7674
chr15	76051658	76057398	protein_coding	Plec	intron	ENSMUSG00000022565	ProperStrand	94	chr16	78941680	78941696	protein_coding	Chodl	exon	ENSMUSG00000022860	NonProperStrand	1	1	-inf
chr4	43492782	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr2	117241609	117241672	lincRNA	Gm13982	intron	ENSMUSG00000085681	NonProperStrand	1	1	-inf
chr2	126918982	126919049	protein_coding	Blvra	intron	ENSMUSG00000001999	NonProperStrand	15	chr12	78350925	78351002	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-8.6827
chr17	39846974	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	98858216	98859611	SINE	B4A	B4	chr15B4A98859382	ProperStrand	3	1	-4.3017
chr5	132373344	132373434	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr4	86478549	86478619	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-8.1214
chr2	30408869	30408919	SINE	B4A	B4	chr2B4A30408771	ProperStrand	1	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	39846464	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	93326097	93326146	Simple_repeat	(TTTC)n	Simple_repeat	chr13(TTTC)n93326041	ProperStrand	1	1	-inf
chr14	56696383	56696415	LINE	Lx2	L1	chr14Lx256695472	ProperStrand	1	chr17	39847203	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr7	136973932	136973995	SINE	B4A	B4	chr7B4A136973804	ProperStrand	3	chr6	33839073	33839141	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-13.1632
chr11	6419260	6419502	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	chr1	136364889	136364946	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-9.5435
chr3	18193117	18193207	LINE	L1Md_F	L1	chr3L1Md_F18192421	ProperStrand	1	chr3	17877893	17877993	LINE	L1Md_T	L1	chr3L1Md_T17874702	NonProperStrand	2	1	-inf
chr3	79560211	79560311	LTR	ORR1D1	MaLR	chr3ORR1D179560226	NonProperStrand	1	chr3	79560404	79560494	SINE	B1_Mur2	Alu	chr3B1_Mur279560413	NonProperStrand	1	1	-inf
chr5	144004998	144005120	protein_coding	Zfp12	intron	ENSMUSG00000029587	NonProperStrand	6	chr9	30922289	30922305	protein_coding	St14	intron	ENSMUSG00000031995	NonProperStrand	1	1	-inf
chr14	19278161	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr13	97190563	97190614	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6660
chr17	39847331	39847915	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	46082582	46083577	lincRNA	4930505N22Rik	intron	ENSMUSG00000090325	ProperStrand	37	5	-3.3483
chr5	24140711	24140768	LTR	RMER20B	ERVK	chr5RMER20B24140472	ProperStrand	1	chr4	32716093	32716291	protein_coding	Casp8ap2	intron	ENSMUSG00000028282	ProperStrand	52	1	-inf
chr12	78350926	78351006	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr11	77813684	77813714	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	1	-4.0796
chr19	45396120	45396149	Simple_repeat	(CTCTG)n	Simple_repeat	chr19(CTCTG)n45396066	ProperStrand	1	chr7	133118586	133118684	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr10	23785753	23785821	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr2	115664233	115664283	LTR	ORR1E	MaLR	chr2ORR1E115664129	NonProperStrand	1	1	-inf
chr4	151761605	151761685	protein_coding	Chd5	utr3	ENSMUSG00000005045	NonProperStrand	82	chr11	107073493	107073515	protein_coding	Pitpnc1	utr3	ENSMUSG00000040430	ProperStrand	310	1	-8.1093
chr2	30111095	30111194	protein_coding	Lrrc8a	exon	ENSMUSG00000007476	NonProperStrand	15	chr4	154240423	154240507	protein_coding	Ttc34	utr3	ENSMUSG00000046637	ProperStrand	17	1	-17.4258
chr7	80039440	80039486	LINE	L1_Mus3	L1	chr7L1_Mus380039108	ProperStrand	6	chr7	80040546	80040652	SINE	RSINE1	B4	chr7RSINE180040563	NonProperStrand	1	1	-inf
chr7	59233780	59233834	protein_coding	Gas2	intron	ENSMUSG00000030498	ProperStrand	23	chr6	113076216	113076314	protein_coding	Setd5	intron	ENSMUSG00000034269	NonProperStrand	20	1	-16.2021
chr5	24371962	24372129	protein_coding	Prkag2	exon	ENSMUSG00000028944	NonProperStrand	128	chr13	44869601	44869719	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.0857
chr11	59833053	59833069	protein_coding	Pemt	intron	ENSMUSG00000000301	ProperStrand	36	chr5	136338638	136338773	protein_coding	Srrm3	intron	ENSMUSG00000039860	NonProperStrand	42	1	-13.7782
chr5	89707811	89707828	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr6	115805651	115807022	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-11.7633
chr17	39847277	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	40800094	40800195	LTR	RMER6B	ERVK	chr3RMER6B40799803	ProperStrand	1	1	-inf
chr5	107188557	107188573	LINE	Lx3B	L1	chr5Lx3B107188487	ProperStrand	5	chr11	3307511	3307590	protein_coding	Limk2	intron	ENSMUSG00000020451	NonProperStrand	80	1	-16.6748
chr17	39847222	39847359	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	77017422	77018773	protein_coding	Cep135	intron	ENSMUSG00000036403	NonProperStrand	8	1	-3.3803
chr13	109697734	109697754	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr10	7939433	7939486	protein_coding	Ust	intron	ENSMUSG00000047712	ProperStrand	54	1	-8.1908
chr7	55803996	55804096	LINE	Lx2	L1	chr7Lx255803499	ProperStrand	2	chr14	68606078	68606168	LTR	ORR1B1	MaLR	chr14ORR1B168606028	ProperStrand	2	1	-19.8939
chr9	120130415	120130542	SINE	B4	B4	chr9B4120130322	NonProperStrand	37	chr10	63858855	63858872	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-10.7173
chr17	39846419	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	40362044	40362117	LTR	MTE2a	MaLR	chr19MTE2a40361786	NonProperStrand	1	1	-inf
chr1	74571742	74571839	protein_coding	Usp37	intron	ENSMUSG00000033364	ProperStrand	27	chr13	44869573	44869614	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.0527
chr1	33604438	33604464	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	chr4	149120029	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.9009
chr17	39848200	39848299	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	95640742	95640791	protein_coding	Ces1c	intron	ENSMUSG00000057400	NonProperStrand	28	2	-4.8432
chr13	58193424	58196559	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	chr6	50128080	50128125	protein_coding	Mpp6	intron	ENSMUSG00000038388	ProperStrand	34	1	-10.6279
chr11	109011644	109011685	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	155100981	155101032	protein_coding	Ssu72	intron	ENSMUSG00000029038	ProperStrand	5	1	-11.2339
chr17	70963672	70963762	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	44680317	44680417	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	85	1	-5.5239
chr17	39845813	39845913	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	126497308	126497526	SINE	B2_Mm2	B2	chr7B2_Mm2126497271	NonProperStrand	1	1	-inf
chr12	98863232	98865266	LINE	Lx2B	L1	chr12Lx2B98862196	ProperStrand	1	chr12	98842710	98843980	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int98841864	ProperStrand	1	1	-inf
chr13	32010233	32010323	protein_coding	Gmds	intron	ENSMUSG00000038372	NonProperStrand	20	chr13	32178820	32178920	protein_coding	Gmds	intron	ENSMUSG00000038372	ProperStrand	50	1	-14.6227
chrX	42084003	42084030	LTR	ORR1A4-int	MaLR	chrXORR1A4-int42083434	NonProperStrand	3	chr13	60741980	60742080	protein_coding	Dapk1	intron	ENSMUSG00000021559	ProperStrand	39	1	-19.1271
chr5	143108528	143108600	protein_coding	Wipi2	intron	ENSMUSG00000029578	NonProperStrand	16	chr3	152307788	152307843	protein_coding	Ak5	intron	ENSMUSG00000039058	ProperStrand	61	1	-14.6761
chr11	119459858	119459948	SINE	B1_Mur1	Alu	chr11B1_Mur1119459869	ProperStrand	2	chr11	119459759	119459859	SINE	B4	B4	chr11B4119459695	ProperStrand	2	2	-inf
chr17	39847248	39847307	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	57118803	57353285	protein_coding	Ablim1	intron	ENSMUSG00000025085	ProperStrand	19	2	-3.4167
chr11	50308822	50308843	DNA	Charlie1	MER1_type	chr11Charlie150308463	NonProperStrand	4	chr17	39846478	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr15	84826544	84826617	LINE	L2	L2	chr15L284826540	NonProperStrand	1	chr15	84830587	84830660	SINE	B4A	B4	chr15B4A84830451	ProperStrand	1	1	-inf
chr5	67681545	67681600	protein_coding	Tmem33	utr3	ENSMUSG00000037720	NonProperStrand	3	chr11	58316139	58316235	protein_coding	Olfr331	intron	ENSMUSG00000058807	NonProperStrand	7	1	-25.2264
chr17	39846921	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	78426981	78428606	protein_coding	Olfr1353	intron	ENSMUSG00000042774	ProperStrand	3	2	-8.0300
chr1	122357166	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr5	132537296	132537355	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-4.1818
chr17	39842996	39843052	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	63148489	63148555	protein_coding	Efna5	intron	ENSMUSG00000048915	ProperStrand	104	2	-7.2151
chr2	98641977	98642077	LTR	IAPLTR1_Mm	ERVK	chr2IAPLTR1_Mm98641662	ProperStrand	1	chr2	98642208	98642298	LTR	MERVK26-int	ERVK	chr2MERVK26-int98642050	NonProperStrand	1	1	-inf
chr1	4895001	4895054	LTR	RMER12	ERVK	chr1RMER124894828	NonProperStrand	1	chr2	5379253	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr4	132538221	132541821	protein_coding	Fgr	intron	ENSMUSG00000028874	ProperStrand	28	chr11	54878560	54878585	protein_coding	Ccdc69	intron	ENSMUSG00000049588	NonProperStrand	29	1	-15.0362
chr17	39848485	39848555	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr16	92298432	92298492	SINE	MIR3	MIR	chr16MIR392298397	ProperStrand	1	1	-inf
chr2	5379247	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr10	81115034	81115134	protein_coding	Gm10778	intron	ENSMUSG00000074860	ProperStrand	46	1	-5.0611
chr2	90395128	90395156	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr7	133097700	133097771	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.0311
chr9	75464117	75464185	SINE	B2_Mm2	B2	chr9B2_Mm275464093	NonProperStrand	1	chr9	75464336	75464394	SINE	MIRb	MIR	chr9MIRb75464339	ProperStrand	2	1	-inf
chr19	7295685	7295785	LTR	RMER13B	ERVK	chr19RMER13B7295407	NonProperStrand	2	chr19	7295884	7295974	SINE	B1_Mus2	Alu	chr19B1_Mus27295869	ProperStrand	1	1	-inf
chr3	57141066	57141166	DNA	Charlie4a	MER1_type	chr3Charlie4a57140892	ProperStrand	1	chr3	57141437	57141527	LINE	Lx2	L1	chr3Lx257141405	NonProperStrand	1	1	-inf
chr13	95332627	95332650	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	55	chr18	75388376	75388507	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-8.0474
chr6	122740459	122742409	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr2	115694166	115694211	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	1	-7.1176
chr8	61395241	61395258	LINE	Lx2	L1	chr8Lx261394432	ProperStrand	1	chr17	39847048	39847145	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	40803993	40804063	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr6	47778246	47778329	protein_coding	Zfp786	intron	ENSMUSG00000051499	ProperStrand	6	1	-12.1897
chr16	18847918	18848008	LTR	MYSERV16_I-int	ERVK	chr16MYSERV16_I-int18847753	ProperStrand	1	chr16	18847649	18847749	SINE	B2_Mm2	B2	chr16B2_Mm218847576	NonProperStrand	1	1	-inf
chr14	92893204	92893294	LINE	L1_Mur2	L1	chr14L1_Mur292891655	ProperStrand	2	chr14	92893570	92893670	LINE	Lx2B	L1	chr14Lx2B92893467	ProperStrand	1	1	-inf
chr14	101856265	101856360	protein_coding	Tbc1d4	intron	ENSMUSG00000033083	NonProperStrand	12	chr13	97190561	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.3508
chr11	88581925	88581960	lincRNA	C030037D09Rik	exon	ENSMUSG00000087574	NonProperStrand	108	chr19	57360749	57360768	protein_coding	Ablim1	intron	ENSMUSG00000025085	ProperStrand	19	1	-13.1743
chr10	40258604	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr16	23108972	23109021	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-3.3632
chr5	144945495	144945529	protein_coding	Lmtk2	intron	ENSMUSG00000038970	NonProperStrand	132	chr5	144953283	144953327	protein_coding	Bhlha15	utr3	ENSMUSG00000052271	NonProperStrand	12	1	-13.7259
chr8	13785855	13785871	protein_coding	Upf3a	exon	ENSMUSG00000038398	ProperStrand	15	chr2	166944554	166945786	protein_coding	Kcnb1	intron	ENSMUSG00000050556	NonProperStrand	23	1	-16.7832
chr14	68606102	68606202	LTR	ORR1B1	MaLR	chr14ORR1B168606028	NonProperStrand	1	chr4	137483299	137483389	protein_coding	Ece1	intron	ENSMUSG00000057530	ProperStrand	325	1	-inf
chr14	67756814	67756926	SINE	B1_Mm	Alu	chr14B1_Mm67756801	ProperStrand	1	chr17	39843671	39843708	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr5	18108824	18108914	LINE	Lx4B	L1	chr5Lx4B18108241	NonProperStrand	1	chr5	18109253	18109353	LTR	RLTR20B1	ERVK	chr5RLTR20B118109167	ProperStrand	1	1	-inf
chr9	14793980	14794110	SINE	B3	B2	chr9B314793933	ProperStrand	1	chr12	8733499	8743766	protein_coding	Pum2	intron	ENSMUSG00000020594	ProperStrand	67	1	-inf
chr2	29524243	29524343	protein_coding	Rapgef1	intron	ENSMUSG00000039844	NonProperStrand	7	chr2	29519656	29519746	protein_coding	Rapgef1	intron	ENSMUSG00000039844	ProperStrand	77	1	-15.9649
chr10	94199038	94199108	protein_coding	Ccdc41	intron	ENSMUSG00000020024	ProperStrand	17	chr16	91745797	91745877	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	1	-12.7856
chr11	77316254	77316354	protein_coding-noncoding	Git1	utr5	ENSMUSG00000011877	ProperStrand	1	chr11	77315908	77315998	protein_coding	Git1	intron	ENSMUSG00000011877	ProperStrand	1	1	-inf
chrX	137339468	137339568	SINE	B3	B2	chrXB3137339398	ProperStrand	1	chrX	137339268	137339358	SINE	B4A	B4	chrXB4A137339244	ProperStrand	1	1	-inf
chr1	79607168	79607234	protein_coding	Ap1s3	intron	ENSMUSG00000054702	ProperStrand	24	chrX	7907033	7907058	protein_coding	Ssxb10	intron	ENSMUSG00000068219	NonProperStrand	1	1	-inf
chr10	23862046	23862146	LINE	L1MD3	L1	chr10L1MD323861761	NonProperStrand	1	chr10	23862320	23862410	SINE	RSINE1	B4	chr10RSINE123862264	ProperStrand	1	1	-inf
chr16	11105849	11105976	protein_coding	Txndc11	intron	ENSMUSG00000022498	ProperStrand	30	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.4878
chr13	29602522	29602616	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr1	77511594	77511618	protein_coding	Epha4	utr5	ENSMUSG00000026235	ProperStrand	239	1	-5.2259
chr17	39846523	39846784	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	177322857	177322951	LTR	RLTR20B1	ERVK	chr2RLTR20B1177322867	ProperStrand	2	1	-5.3533
chr5	107357814	107357914	LINE	L1ME1	L1	chr5L1ME1107357795	ProperStrand	6	chr5	107357925	107358015	LTR	ORR1D1	MaLR	chr5ORR1D1107357900	NonProperStrand	6	6	-inf
chr18	31766871	31766933	protein_coding	Slc25a46	intron	ENSMUSG00000024259	NonProperStrand	5	chr9	60462411	60462473	protein_coding	Lrrc49	intron	ENSMUSG00000047766	ProperStrand	10	1	-22.6756
chr4	11309478	11317076	protein_coding	Esrp1	intron	ENSMUSG00000040728	ProperStrand	8	chr11	106045967	106046084	protein_coding	Strada	utr3	ENSMUSG00000069631	NonProperStrand	38	2	-inf
chr9	96477057	96477127	protein_coding	Rasa2	intron	ENSMUSG00000032413	ProperStrand	8	chr8	89046125	89046156	protein_coding	Abcc12	intron	ENSMUSG00000036872	ProperStrand	128	1	-14.6481
chr17	39846462	39846526	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	7455696	7455714	protein_coding	Mmp3	utr3	ENSMUSG00000043613	ProperStrand	3	2	-8.0300
chr7	80031642	80031696	LINE	L1Md_F2	L1	chr7L1Md_F280031647	ProperStrand	3	chr1	136364891	136364969	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-16.7358
chr14	120496638	120496700	LINE	L1_Mur2	L1	chr14L1_Mur2120496409	NonProperStrand	2	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-18.9504
chr1	167225497	167225570	LINE	L2	L2	chr1L2167225516	ProperStrand	1	chr1	167225697	167225768	LTR	MT2C_Mm	ERVL	chr1MT2C_Mm167225624	NonProperStrand	4	1	-inf
chr4	109452844	109452951	protein_coding	Faf1	intron	ENSMUSG00000010517	NonProperStrand	30	chr11	107081337	107081353	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-10.1315
chr1	135516443	135516533	protein_coding	Zc3h11a	utr3	ENSMUSG00000026464	ProperStrand	33	chr1	66709256	66709356	protein_coding	Unc80	intron	ENSMUSG00000055567	ProperStrand	34	1	-14.3832
chr4	101227707	101227797	misc_RNA	7SK	.	ENSMUSG00000089446	NonProperStrand	1	chr4	101227587	101227687	protein_coding	Dnajc6	intron	ENSMUSG00000028528	NonProperStrand	58	1	-inf
chr2	67613894	67613999	LINE	L1_Mur1	L1	chr2L1_Mur167613739	NonProperStrand	1	chr15	99815106	99815161	protein_coding	Larp4	intron	ENSMUSG00000023025	NonProperStrand	78	1	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	36638626	36638692	LTR	IAPEz-int	ERVK	chr18IAPEz-int36634003	NonProperStrand	3	1	-4.3017
chr4	54864109	54864234	LINE	L1MA5	L1	chr4L1MA554864097	NonProperStrand	1	chr5	105884790	105884823	protein_coding	Lrrc8b	intron	ENSMUSG00000070639	ProperStrand	20	1	-inf
chr1	4845121	4845199	protein_coding	Lypla1	intron	ENSMUSG00000025903	ProperStrand	29	chr6	34379373	34379441	pseudogene	Gm13857	.	ENSMUSG00000084965	ProperStrand	1	1	-inf
chr17	39846759	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	110092338	110092366	Simple_repeat	(CCCTAA)n	Simple_repeat	chr5(CCCTAA)n110092210	NonProperStrand	1	1	-inf
chr17	39846807	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	88718799	88718879	protein_coding	Gm10634	intron	ENSMUSG00000090760	NonProperStrand	3	2	-8.0300
chr17	39847636	39847754	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	22043200	22043657	protein_coding	Zfp184	intron	ENSMUSG00000006720	ProperStrand	13	3	-4.7272
chr5	146261251	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr5	120627281	120627366	protein_coding	Rbm19	intron	ENSMUSG00000029594	ProperStrand	47	1	-11.8625
chr15	65319880	65319970	LTR	LTRIS5	ERV1	chr15LTRIS565319842	NonProperStrand	1	chr15	65320073	65320173	LTR	LTRIS5	ERV1	chr15LTRIS565320062	NonProperStrand	1	1	-inf
chr9	123461991	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr16	36526742	36526844	protein_coding	Casr	intron	ENSMUSG00000051980	ProperStrand	2	1	-8.0983
chr8	84957766	84957808	LINE	L1_Mus1	L1	chr8L1_Mus184951487	NonProperStrand	3	chr12	86282138	86282229	protein_coding	1110018G07Rik	intron	ENSMUSG00000042350	NonProperStrand	16	1	-inf
chr2	121673183	121673273	SINE	B1F1	Alu	chr2B1F1121673196	ProperStrand	2	chr2	121673074	121673174	SINE	B4A	B4	chr2B4A121672981	ProperStrand	2	2	-inf
chr5	42638638	42638728	DNA	Tigger11a	MER2_type	chr5Tigger11a42638533	NonProperStrand	1	chr5	42638888	42638988	LINE	Lx9	L1	chr5Lx942638765	NonProperStrand	1	1	-inf
chr14	47289627	47289648	LTR	ORR1E	MaLR	chr14ORR1E47289477	NonProperStrand	4	chr17	39848134	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-6.6701
chrX	70198732	70198822	protein_coding-noncoding	Nsdhl	utr5	ENSMUSG00000031349	ProperStrand	1	chrX	70198989	70199089	protein_coding	Nsdhl	intron	ENSMUSG00000031349	ProperStrand	1	1	-inf
chr2	91056685	91056760	protein_coding	Ddb2	intron	ENSMUSG00000002109	NonProperStrand	9	chr6	124812456	124812532	protein_coding	Gpr162	intron	ENSMUSG00000038390	ProperStrand	81	1	-15.3056
chr9	6057154	6057244	LTR	MMETn-int	ERVK	chr9MMETn-int6054866	ProperStrand	1	chr9	6057545	6057646	SINE	B2_Mm1t	B2	chr9B2_Mm1t6057443	ProperStrand	1	1	-inf
chr1	83751709	83751809	LINE	L1M5	L1	chr1L1M583751244	NonProperStrand	1	chr1	66987073	66987163	protein_coding	Myl1	intron	ENSMUSG00000061816	ProperStrand	1	1	-inf
chr2	152353896	152353996	SINE	B2_Mm2	B2	chr2B2_Mm2152353905	ProperStrand	1	chr5	115560861	115560951	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	165	1	-inf
chr9	123461802	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	55206603	55221091	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	5	-6.1343
chr8	103947733	103947833	LINE	Lx4B	L1	chr8Lx4B103946071	ProperStrand	1	chr18	57546612	57546702	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	1	-inf
chr1	142869711	142869811	LINE	L1Md_T	L1	chr1L1Md_T142869204	NonProperStrand	1	chr1	142870431	142870521	LINE	L1Md_T	L1	chr1L1Md_T142870379	NonProperStrand	1	1	-inf
chr6	106778694	106778712	LINE	Lx3_Mus	L1	chr6Lx3_Mus106777957	NonProperStrand	6	chr19	10615911	10616036	protein_coding	Cpsf7	intron	ENSMUSG00000034820	ProperStrand	82	1	-16.1815
chr4	91311061	91311148	LINE	L1M2	L1	chr4L1M291311016	ProperStrand	2	chr4	91322759	91322790	LINE	L1Md_T	L1	chr4L1Md_T91321308	NonProperStrand	6	2	-inf
chr16	44537345	44537391	protein_coding	Boc	intron	ENSMUSG00000022687	ProperStrand	39	chr11	33162979	33163027	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-8.3054
chr1	55004771	55004820	SINE	B2_Mm1a	B2	chr1B2_Mm1a55004775	NonProperStrand	1	chr13	92684739	92684837	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	NonProperStrand	97	1	-inf
chr13	62525676	62525744	LINE	L1Md_T	L1	chr13L1Md_T62520203	NonProperStrand	1	chr17	39846097	39846173	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr2	13574979	13575587	protein_coding	St8sia6	utr3	ENSMUSG00000003418	NonProperStrand	14	chr13	44869594	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.3798
chr11	118250716	118250779	LINE	Lx8	L1	chr11Lx8118250717	NonProperStrand	1	chr11	118251476	118251550	LTR	MTC	MaLR	chr11MTC118251378	ProperStrand	1	1	-inf
chr17	39848099	39848212	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	3538183	3538199	protein_coding	Gdi2	intron	ENSMUSG00000021218	NonProperStrand	1	1	-inf
chr11	113901597	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	chr11	76978036	76978137	protein_coding	Efcab5	intron	ENSMUSG00000050944	NonProperStrand	27	1	-12.0698
chr6	124714838	124714888	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	chrX	50568907	50568987	protein_coding	Plac1	intron	ENSMUSG00000061082	ProperStrand	82	1	-9.6659
chr8	119519013	119519060	LTR	RLTR11A2	ERVK	chr8RLTR11A2119519024	NonProperStrand	1	chr4	106987009	106987066	protein_coding	Yipf1	utr5	ENSMUSG00000057375	ProperStrand	174	1	-inf
chr18	35582721	35582796	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr1	60489961	60490046	protein_coding	Abi2	intron	ENSMUSG00000026782	NonProperStrand	40	1	-9.2293
chr11	68311499	68311555	SINE	B3A	B2	chr11B3A68311407	NonProperStrand	1	chr11	68298260	68298304	protein_coding	Pik3r5	intron	ENSMUSG00000020901	NonProperStrand	75	1	-inf
chr17	39846580	39846906	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	16754830	16754850	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	4	-4.0051
chr17	39843733	39843783	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chrX	102568821	102568882	lincRNA	5330434G04Rik	exon	ENSMUSG00000087620	ProperStrand	5	1	-7.9392
chr17	39843390	39843441	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr5	111160079	111160136	protein_coding	Ep400	intron	ENSMUSG00000029505	NonProperStrand	25	1	-4.1672
chr17	26473692	26473782	LTR	ORR1A2	MaLR	chr17ORR1A226473672	ProperStrand	2	chr17	26015622	26015723	protein_coding	0610011F06Rik	intron	ENSMUSG00000025731	ProperStrand	2	2	-inf
chr10	122020302	122020375	DNA	URR1A	MER1_type	chr10URR1A122020315	ProperStrand	1	chr10	122019609	122019672	DNA	URR1B	MER1_type	chr10URR1B122019611	NonProperStrand	1	1	-inf
chr7	140907920	140907947	protein_coding	Bccip	intron	ENSMUSG00000030983	NonProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr4	99117350	99117460	DNA	URR1B	MER1_type	chr4URR1B99117345	NonProperStrand	2	chr4	99090430	99090462	LTR	ORR1E	MaLR	chr4ORR1E99090380	ProperStrand	2	2	-inf
chr15	82955296	82955363	LTR	MTE-int	MaLR	chr15MTE-int82955135	NonProperStrand	2	chr15	50697473	50697550	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	1	-19.1124
chr12	21245489	21245534	protein_coding	Asap2	intron	ENSMUSG00000052632	ProperStrand	137	chr11	88567977	88568012	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-4.6560
chr7	51985482	51985563	Simple_repeat	(TAGA)n	Simple_repeat	chr7(TAGA)n51985491	ProperStrand	1	chr9	123461884	123461921	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	56008579	56008669	LINE	L1Md_T	L1	chr10L1Md_T56007060	NonProperStrand	1	chr10	53284384	53284484	protein_coding	Mcm9	intron	ENSMUSG00000058298	ProperStrand	11	1	-inf
chr2	33390846	33390936	SINE	RSINE1	B4	chr2RSINE133390820	ProperStrand	1	chr2	33390748	33390848	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n33390647	NonProperStrand	1	1	-inf
chr7	122470892	122470969	LTR	LTR33	ERVL	chr7LTR33122470823	NonProperStrand	1	chr17	28328835	28328982	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	108	1	-inf
chr3	89415829	89415912	protein_coding	Kcnn3	intron	ENSMUSG00000000794	NonProperStrand	62	chr10	85001804	85001820	protein_coding	Btbd11	intron	ENSMUSG00000020042	ProperStrand	82	1	-11.3285
chr14	27828463	27828553	SINE	B1_Mur2	Alu	chr14B1_Mur227828402	ProperStrand	1	chr14	27828582	27828682	SINE	B1_Mur4	Alu	chr14B1_Mur427828557	ProperStrand	1	1	-inf
chr11	78255072	78255198	SINE	B2_Mm2	B2	chr11B2_Mm278255071	ProperStrand	1	chr9	110884889	110884923	protein_coding	Lrrc2	utr3	ENSMUSG00000032495	ProperStrand	8	1	-inf
chr19	3969413	3969513	protein_coding	1700055N04Rik	intron	ENSMUSG00000037263	NonProperStrand	1	chr19	3969866	3969956	protein_coding	1700055N04Rik	utr3	ENSMUSG00000037263	ProperStrand	1	1	-inf
chr11	100718500	100719922	SINE	B4	B4	chr11B4100718481	ProperStrand	1	chr6	47473523	47473623	protein_coding	Cul1	intron	ENSMUSG00000029686	ProperStrand	18	1	-inf
chr9	107264659	107264758	DNA	URR1A	MER1_type	chr9URR1A107264679	NonProperStrand	1	chr13	44869576	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr19	8723994	8724021	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr14	45529001	45529113	lincRNA	Gm16976	intron	ENSMUSG00000085500	NonProperStrand	62	1	-12.9346
chr16	8720723	8720772	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr9	105379118	105379138	protein_coding	Atp2c1	intron	ENSMUSG00000032570	ProperStrand	10	1	-12.3263
chrX	73694034	73694141	LINE	L1Md_T	L1	chrXL1Md_T73693738	NonProperStrand	3	chr17	39847011	39847048	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39846822	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	130222343	130222441	protein_coding	Mrps17	utr5	ENSMUSG00000034211	ProperStrand	3	1	-4.3017
chr17	39847552	39847692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	91270379	91270396	protein_coding	Olig1	exon	ENSMUSG00000046160	NonProperStrand	4	1	-3.7035
chr10	4354160	4354226	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr3	123240733	123240818	protein_coding	Ndst3	intron	ENSMUSG00000027977	ProperStrand	37	1	-10.7389
chr6	124397414	124397519	protein_coding	Clstn3	intron	ENSMUSG00000008153	ProperStrand	30	chr5	120643918	120643939	protein_coding	Rbm19	intron	ENSMUSG00000029594	NonProperStrand	36	1	-14.4634
chr17	13847021	13847066	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	chr3	95338920	95338987	protein_coding	Ctss	intron	ENSMUSG00000038642	NonProperStrand	22	1	-12.3984
chr11	119396251	119396351	LTR	MTE2a	MaLR	chr11MTE2a119396276	ProperStrand	4	chr11	119396158	119396248	SINE	MIRc	MIR	chr11MIRc119396173	ProperStrand	3	3	-inf
chr1	89551683	89551798	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	chr8	114521530	114521571	protein_coding	Kars	intron	ENSMUSG00000031948	NonProperStrand	70	3	-17.3871
chr2	90395156	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr4	132832950	132833062	protein_coding	Tmem222	intron	ENSMUSG00000028857	ProperStrand	4	1	-15.4110
chr15	59012757	59012829	Simple_repeat	(CAGAG)n	Simple_repeat	chr15(CAGAG)n59012216	NonProperStrand	9	chr15	59013932	59014009	Unknown	YREP_Mm	Unknown	chr15YREP_Mm59013865	NonProperStrand	1	1	-inf
chr15	49612290	49612380	LINE	Lx4A	L1	chr15Lx4A49609392	NonProperStrand	1	chr15	49632828	49632928	Other	RMER1C	Other	chr15RMER1C49632491	NonProperStrand	1	1	-inf
chr18	57547092	57547182	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	19	chr7	89384424	89384524	protein_coding	Sh3gl3	intron	ENSMUSG00000030638	ProperStrand	7	1	-18.5508
chr17	39847737	39847797	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	22990694	22990789	SINE	RSINE1	B4	chr11RSINE122990717	NonProperStrand	6	2	-5.2646
chr7	55985446	55985489	LINE	L1_Mur2	L1	chr7L1_Mur255985146	NonProperStrand	1	chr17	39846759	39846841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	31761933	31761977	protein_coding	Fam110c	intron	ENSMUSG00000036136	ProperStrand	3	chr4	40152069	40152185	protein_coding	Ddx58	utr3	ENSMUSG00000040296	NonProperStrand	18	1	-23.1775
chr12	59040366	59040443	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr3	9439745	9439825	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-4.5601
chr7	127872130	127872205	protein_coding	BC030336	intron	ENSMUSG00000046096	NonProperStrand	34	chr13	97190561	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.2385
chr1	75860957	75861057	LTR	MER89	ERV1	chr1MER8975860757	ProperStrand	1	chr1	75861148	75861238	SINE	B3A	B2	chr1B3A75861146	ProperStrand	1	1	-inf
chr2	129178368	129178385	LINE	L1Md_F2	L1	chr2L1Md_F2129176157	NonProperStrand	5	chr9	20911438	20911455	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	20	1	-19.9009
chr17	39846633	39846688	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	22961411	22961477	SINE	B1_Mus1	Alu	chr11B1_Mus122961339	ProperStrand	1	1	-inf
chr8	18647441	18647535	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr17	34610909	34610957	protein_coding	Btnl4	intron	ENSMUSG00000058435	NonProperStrand	19	1	-9.2260
chr2	91251850	91251929	protein_coding	1110051M20Rik	intron	ENSMUSG00000040591	NonProperStrand	44	chr5	92432729	92432777	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	2	-15.8638
chr17	39847445	39847521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	107689719	107689805	SINE	MIRb	MIR	chr11MIRb107689633	ProperStrand	1	1	-inf
chr17	39846750	39846840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	35013858	35014087	protein_coding-noncoding	C2	utr3	ENSMUSG00000024371	NonProperStrand	2	1	-5.3533
chr5	108317276	108317376	LTR	RLTR15	ERVK	chr5RLTR15108317267	ProperStrand	1	chr5	108314080	108317270	Simple_repeat	(GGGA)n	Simple_repeat	chr5(GGGA)n108314031	ProperStrand	1	1	-inf
chr11	69667832	69667877	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr13	31991758	31991874	protein_coding	Gmds	intron	ENSMUSG00000038372	ProperStrand	50	1	-9.3832
chr17	39843588	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	114702052	114702089	protein_coding	Cmtm8	intron	ENSMUSG00000041012	NonProperStrand	39	1	-3.3329
chr1	161035399	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr2	32961751	32961808	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-9.3085
chr17	39843815	39843909	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr5	66681055	66681105	protein_coding	Nsun7	intron	ENSMUSG00000029206	ProperStrand	31	1	-4.2032
chr12	111328843	111328932	LTR	MTE2a	MaLR	chr12MTE2a111328607	NonProperStrand	1	chr12	111329373	111329415	SINE	B1_Mus2	Alu	chr12B1_Mus2111329328	NonProperStrand	1	1	-inf
chr2	119631542	119631607	protein_coding	Tyro3	intron	ENSMUSG00000027298	ProperStrand	6	chr5	132117151	132117226	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-11.9552
chr9	114562755	114562918	SINE	B1_Mur2	Alu	chr9B1_Mur2114562783	ProperStrand	16	chr9	114562910	114563012	SINE	PB1D10	Alu	chr9PB1D10114562915	ProperStrand	26	16	-inf
chr8	33805506	33805573	LINE	Lx9	L1	chr8Lx933805447	ProperStrand	3	chr17	39847641	39847677	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr6	116339517	116339633	protein_coding	March8	intron	ENSMUSG00000025702	ProperStrand	10	chr5	67814619	67814649	protein_coding	Bend4	intron	ENSMUSG00000092060	ProperStrand	30	1	-17.0564
chr17	13657257	13657367	LTR	ORR1E	MaLR	chr17ORR1E13657125	ProperStrand	1	chr12	85123788	85123811	protein_coding	Papln	intron	ENSMUSG00000021223	ProperStrand	20	1	-inf
chr17	39847166	39847253	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	55281715	55281793	protein_coding-noncoding	Rftn2	utr3	ENSMUSG00000025978	ProperStrand	2	2	-inf
chr14	46839223	46839295	LINE	L1Md_F2	L1	chr14L1Md_F246838654	ProperStrand	1	chr14	46839445	46839489	LINE	Lx8	L1	chr14Lx846839416	ProperStrand	1	1	-inf
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr5	17776751	17776778	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	3	-11.1608
chrY	1265082	1265137	Other	C573_MM	Other	chrYC573_MM1264968	ProperStrand	3	chr6	91887235	91887300	protein_coding	4930590J08Rik	intron	ENSMUSG00000034063	ProperStrand	10	2	-20.5317
chr10	5531157	5531252	protein_coding	Esr1	intron	ENSMUSG00000019768	ProperStrand	18	chr11	120346638	120346662	protein_coding	Mrpl12	exon	ENSMUSG00000039640	NonProperStrand	89	1	-13.6753
chr17	39847223	39847285	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	97185719	97186079	SINE	RSINE1	B4	chr6RSINE197185686	ProperStrand	1	1	-inf
chr17	39845393	39845429	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr11	69919317	69921235	LTR	RMER15	ERVL	chr11RMER1569921112	ProperStrand	14	1	-4.9353
chr18	31796277	31796377	protein_coding	Sap130	intron	ENSMUSG00000024260	ProperStrand	80	chr1	82892555	82892645	protein_coding	Agfg1	utr3	ENSMUSG00000026159	ProperStrand	65	1	-11.2830
chr4	126111599	126111652	LINE	L2	L2	chr4L2126111596	ProperStrand	1	chr4	126107622	126107667	SINE	MIR	MIR	chr4MIR126107626	ProperStrand	6	1	-inf
chr8	114152353	114152443	protein_coding-noncoding	Ldhd	utr3	ENSMUSG00000031958	NonProperStrand	2	chr8	114152441	114152541	protein_coding	Ldhd	exon	ENSMUSG00000031958	NonProperStrand	2	2	-inf
chr11	76211020	76211101	protein_coding	Nxn	intron	ENSMUSG00000020844	ProperStrand	42	chr13	12417353	12417373	protein_coding	Actn2	intron	ENSMUSG00000052374	NonProperStrand	37	1	-13.7218
chr13	44869571	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr9	114731343	114737218	protein_coding	Cmtm8	intron	ENSMUSG00000041012	NonProperStrand	39	1	-5.3266
chr5	146261241	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr13	44869574	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-9.4832
chr9	123461947	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	127465756	127465866	protein_coding	Slc35f5	intron	ENSMUSG00000026342	ProperStrand	10	1	-4.3847
chr11	102430841	102430931	LTR	RLTR18B	ERVK	chr11RLTR18B102430808	ProperStrand	11	chr11	102430943	102431043	SINE	B3A	B2	chr11B3A102430947	ProperStrand	11	11	-inf
chr4	56901290	56901317	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	140	chr10	80417216	80417320	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	11	1	-13.7887
chr5	33527525	33527647	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int33527476	NonProperStrand	42	chr5	33529187	33529209	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int33529161	NonProperStrand	15	1	-15.5719
chr3	98054605	98054656	SINE	B3	B2	chr3B398054550	ProperStrand	1	chr6	120353958	120354032	protein_coding	Kdm5a	intron	ENSMUSG00000030180	NonProperStrand	22	1	-inf
chr17	39847381	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	30424639	30424669	SINE	B1_Mus2	Alu	chr2B1_Mus230424608	NonProperStrand	1	1	-inf
chr14	56967128	56967228	LINE	L1M3	L1	chr14L1M356967131	NonProperStrand	2	chr14	56943544	56943634	LTR	MER65-int	ERV1	chr14MER65-int56943548	NonProperStrand	2	2	-inf
chr2	164010809	164010867	antisense	A730032A03Rik	.	ENSMUSG00000085649	ProperStrand	13	chr9	50771454	50771470	protein_coding	Sik2	intron	ENSMUSG00000037112	NonProperStrand	15	1	-17.9502
chr1	156011347	156011440	LINE	L1Md_F2	L1	chr1L1Md_F2156010678	NonProperStrand	1	chr1	156012892	156012930	LTR	RLTR26	ERVK	chr1RLTR26156012728	NonProperStrand	1	1	-inf
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	49753098	49753152	Simple_repeat	(TTCTC)n	Simple_repeat	chr9(TTCTC)n49752982	NonProperStrand	1	1	-inf
chrX	20716828	20716928	LTR	ETnERV2-int	ERVK	chrXETnERV2-int20716813	ProperStrand	6	chrX	20715073	20716787	LTR	MYSERV16_I-int	ERVK	chrXMYSERV16_I-int20713067	NonProperStrand	5	3	-inf
chr10	128395740	128395784	protein_coding	Mettl7b	utr3	ENSMUSG00000025347	NonProperStrand	1	chr10	128393830	128393864	protein_coding	Itga7	intron	ENSMUSG00000025348	ProperStrand	66	1	-inf
chr10	78405257	78405274	LINE	L1Md_T	L1	chr10L1Md_T78403281	NonProperStrand	34	chr11	33754926	33755031	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	1	-14.2054
chr7	80224369	80224443	LINE	L1Md_A	L1	chr7L1Md_A80222876	NonProperStrand	13	chr18	77062461	77062537	LTR	MTD	MaLR	chr18MTD77062227	NonProperStrand	3	1	-22.9476
chr2	58493551	58493598	protein_coding	Upp2	intron	ENSMUSG00000026839	NonProperStrand	62	chr10	105238272	105238310	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-12.6299
chr11	86784879	86784980	protein_coding	Ypel2	intron	ENSMUSG00000018427	ProperStrand	11	chr9	123461932	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr2	122291244	122291261	LTR	ORR1A1	MaLR	chr2ORR1A1122291239	NonProperStrand	2	chr10	77055738	77058708	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	NonProperStrand	42	2	-inf
chr2	92275987	92276087	SINE	B1_Mm	Alu	chr2B1_Mm92276003	NonProperStrand	1	chr2	92275871	92275961	SINE	B3A	B2	chr2B3A92275739	NonProperStrand	1	1	-inf
chr14	75846255	75846279	LTR	MTB_Mm	MaLR	chr14MTB_Mm75846072	NonProperStrand	17	chr5	66589526	66589578	pseudogene	Gm15794	.	ENSMUSG00000084108	ProperStrand	1	1	-inf
chr3	139420133	139420159	Simple_repeat	(GGGAGA)n	Simple_repeat	chr3(GGGAGA)n139420070	ProperStrand	1	chr5	65666165	65666201	protein_coding	Rfc1	intron	ENSMUSG00000029191	ProperStrand	34	1	-inf
chr3	145816876	145825748	protein_coding	Mcoln2	intron	ENSMUSG00000011008	ProperStrand	11	chr9	123461859	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-7.1466
chr13	36036803	36036900	LTR	MTC	MaLR	chr13MTC36036707	ProperStrand	1	chr17	83862002	83862037	protein_coding	Eml4	intron	ENSMUSG00000032624	ProperStrand	63	1	-inf
chr18	56743258	56748009	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	96	chr18	56748006	56749708	protein_coding	1700065I17Rik	utr5	ENSMUSG00000032900	ProperStrand	18	1	-13.5237
chr16	22391360	22391379	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr6	113729727	113730348	protein_coding	Atp2b2	intron	ENSMUSG00000030302	ProperStrand	88	1	-8.3181
chr1	134307319	134307356	LTR	MT2A	ERVL	chr1MT2A134307228	NonProperStrand	1	chr1	134308091	134308152	LTR	ORR1C1	MaLR	chr1ORR1C1134307901	NonProperStrand	7	1	-inf
chr7	80301046	80301146	DNA	MER33	MER1_type	chr7MER3380301047	ProperStrand	2	chr7	80300327	80300417	SINE	B4	B4	chr7B480300189	NonProperStrand	3	2	-inf
chr17	39847676	39847919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	73768835	73768869	LTR	ORR1C1	MaLR	chr18ORR1C173768569	NonProperStrand	1	1	-inf
chr12	59040422	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr8	52337017	52337107	LTR	RMER6-int	ERVK	chr8RMER6-int52336818	ProperStrand	4	1	-15.7338
chr1	192745600	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-9.8760
chr5	146261078	146261103	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	ProperStrand	3	chr16	57391615	57391676	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	20	1	-23.6265
chr1	136588525	136588615	LINE	L1ME2	L1	chr1L1ME2136588440	NonProperStrand	1	chr1	136588301	136588401	SINE	B2_Mm2	B2	chr1B2_Mm2136588217	NonProperStrand	1	1	-inf
chr19	46513268	46514455	protein_coding	Sufu	intron	ENSMUSG00000025231	ProperStrand	59	chr13	44869575	44869635	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.5247
chr11	77494776	77494866	SINE	B1F	Alu	chr11B1F77494740	ProperStrand	2	chr11	77494863	77494963	SINE	PB1D9	Alu	chr11PB1D977494878	ProperStrand	2	2	-inf
chr7	130905429	130908410	LINE	L1_Mus2	L1	chr7L1_Mus2130907810	NonProperStrand	6	chr7	130902218	130904932	LINE	L1_Mus3	L1	chr7L1_Mus3130904757	NonProperStrand	3	3	-inf
chr16	18920793	18920814	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	chr16	35082730	35082791	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	1	-8.6158
chr19	18690271	18690316	protein_coding	Ostf1	intron	ENSMUSG00000024725	NonProperStrand	53	chr5	136007609	136007648	protein_coding	Hip1	intron	ENSMUSG00000039959	NonProperStrand	75	1	-11.8236
chr8	121535899	121535922	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	chr2	119773862	119774126	protein_coding	Mga	exon	ENSMUSG00000033943	NonProperStrand	66	1	-8.4492
chr15	99927892	99927908	protein_coding	Dip2b	intron	ENSMUSG00000023026	NonProperStrand	21	chr19	24463121	24463262	protein_coding	Pip5k1b	intron	ENSMUSG00000024867	ProperStrand	56	1	-14.2866
chr17	74142249	74142339	LINE	L1_Mus3	L1	chr17L1_Mus374141492	NonProperStrand	1	chr17	78629528	78629628	protein_coding	Crim1	intron	ENSMUSG00000024074	NonProperStrand	26	1	-inf
chr13	22515027	22515127	LINE	L1Md_T	L1	chr13L1Md_T22514841	ProperStrand	1	chr13	22514470	22514560	LINE	L1_Mur1	L1	chr13L1_Mur122513420	ProperStrand	1	1	-inf
chr17	64662027	64662127	protein_coding	Pja2	intron	ENSMUSG00000024083	NonProperStrand	19	chr19	30174467	30175045	protein_coding	Gldc	intron	ENSMUSG00000024827	ProperStrand	40	1	-15.1744
chr6	40474096	40474192	LINE	L1_Mm	L1	chr6L1_Mm40473409	NonProperStrand	1	chr17	39847684	39847715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	106959286	106959413	LTR	RMER6D	ERVK	chr13RMER6D106959129	ProperStrand	1	chr17	39847702	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	35036730	35036782	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	NonProperStrand	63	chr7	35036188	35036260	protein_coding	Gm6096	exon	ENSMUSG00000078380	ProperStrand	1	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr16	20400844	20400942	protein_coding	Abcc5	utr3	ENSMUSG00000022822	ProperStrand	63	1	-10.1810
chr17	39846759	39846781	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	54897836	54897852	LTR	RLTR42-int	ERVK	chr3RLTR42-int54897202	NonProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr16	92453088	92453228	protein_coding	Rcan1	intron	ENSMUSG00000022951	ProperStrand	210	1	-7.3077
chr8	76380046	76380136	LINE	L1VL1	L1	chr8L1VL176374823	NonProperStrand	1	chr8	76380273	76380373	LTR	RLTR11A2	ERVK	chr8RLTR11A276380231	NonProperStrand	1	1	-inf
chr15	22322337	22322437	LTR	RLTR10	ERVK	chr15RLTR1022322358	NonProperStrand	1	chr15	22322096	22322186	SINE	B1_Mm	Alu	chr15B1_Mm22322081	ProperStrand	1	1	-inf
chr13	109873416	109873475	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chrX	10166142	10166205	protein_coding	Tspan7	intron	ENSMUSG00000058254	NonProperStrand	3	1	-14.3441
chr7	6817863	6817880	LINE	Lx6	L1	chr7Lx66817142	ProperStrand	1	chr7	133117048	133117144	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr8	38415387	38415487	LINE	Lx7	L1	chr8Lx738415387	ProperStrand	1	chr8	38415945	38416035	LINE	Lx7	L1	chr8Lx738415574	ProperStrand	1	1	-inf
chr17	35973128	35973144	protein_coding	Tubb5	exon	ENSMUSG00000001525	ProperStrand	7	chr7	4809837	4809912	protein_coding	Isoc2b	intron	ENSMUSG00000052605	ProperStrand	64	1	-16.3071
chr12	76308265	76308335	LINE	L1_Mus1	L1	chr12L1_Mus176307765	ProperStrand	1	chr12	13215125	13215166	SINE	B4A	B4	chr12B4A13214966	ProperStrand	1	1	-inf
chr12	81508775	81508913	protein_coding	Dcaf5	intron	ENSMUSG00000049106	ProperStrand	69	chr10	90170414	90170431	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-10.1584
chrX	73903071	73903140	LTR	ORR1A1-int	MaLR	chrXORR1A1-int73902027	ProperStrand	1	chrX	73901953	73902012	LTR	ORR1A1	MaLR	chrXORR1A173901673	ProperStrand	1	1	-inf
chr6	35496118	35496173	LTR	ORR1B1-int	MaLR	chr6ORR1B1-int35495877	NonProperStrand	1	chr11	120112478	120112564	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	136	1	-inf
chr13	119375512	119375604	LINE	L2c	L2	chr13L2c119375083	ProperStrand	1	chr17	39846991	39847039	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	77923846	77923906	protein_coding	Cacng2	intron	ENSMUSG00000019146	ProperStrand	169	chr5	149048681	149048768	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-8.9613
chr17	39845126	39845184	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr16	19041578	19041626	LTR	MTEb	MaLR	chr16MTEb19041488	NonProperStrand	4	1	-7.5930
chr17	39847187	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	65004456	65004474	protein_coding	Igdcc3	intron	ENSMUSG00000032394	ProperStrand	4	1	-4.8204
chr13	97156303	97156403	LTR	RMER17C	ERVK	chr13RMER17C97156325	ProperStrand	2	chr13	97156215	97156305	SINE	B4A	B4	chr13B4A97156140	ProperStrand	2	2	-inf
chr7	28571173	28571263	LTR	RLTR13D3	ERVK	chr7RLTR13D328570750	ProperStrand	5	chr2	11587778	11589011	protein_coding	Il2ra	intron	ENSMUSG00000026770	NonProperStrand	21	1	-19.1315
chr9	114401508	114401645	protein_coding	Ccr4	exon	ENSMUSG00000047898	NonProperStrand	42	chr2	3410873	3410891	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-14.7859
chr2	32568337	32568415	miRNA	Mir2861	.	ENSMUSG00000093280	NonProperStrand	1	chr2	32567838	32567891	protein_coding	Cdk9	intron	ENSMUSG00000009555	NonProperStrand	6	1	-inf
chr6	80052806	80052826	protein_coding	Lrrtm4	intron	ENSMUSG00000052581	NonProperStrand	16	chr7	35704421	35704495	protein_coding	Pepd	intron	ENSMUSG00000063931	NonProperStrand	73	1	-14.3223
chr7	125644087	125644189	LTR	MLT1C	MaLR	chr7MLT1C125643972	ProperStrand	2	chr5	21742906	21742946	protein_coding	Reln	intron	ENSMUSG00000042453	NonProperStrand	79	1	-19.2571
chr17	39847755	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	55064300	55064332	protein_coding	Sf3b1	intron	ENSMUSG00000025982	NonProperStrand	4	1	-3.7035
chr17	39846931	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	44248840	44248897	LTR	MT2A	ERVL	chr6MT2A44248809	NonProperStrand	1	1	-inf
chr13	49601007	49601074	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	chr2	113672925	113672982	protein_coding	Arhgap11a	utr3	ENSMUSG00000041219	NonProperStrand	1	1	-inf
chr11	6149938	6150038	DNA	URR1B	MER1_type	chr11URR1B6149897	NonProperStrand	6	chr11	6150030	6150120	SINE	B3	B2	chr11B36150037	NonProperStrand	3	3	-inf
chr10	112948661	112948680	LTR	MT2C_Mm	ERVL	chr10MT2C_Mm112948434	ProperStrand	8	chr6	122713289	122713412	protein_coding	Slc2a3	intron	ENSMUSG00000003153	NonProperStrand	31	1	-17.5490
chr1	88277412	88277523	SINE	B1_Mus1	Alu	chr1B1_Mus188277411	ProperStrand	2	mmu-miR-294-3p	0	22	miRNA	mmu-miR-294-3p	.	mmu-miR-294-3p	ProperStrand	6	1	-inf
chr9	31405597	31409302	LTR	MTD	MaLR	chr9MTD31405361	NonProperStrand	1	chr9	31403562	31405583	SINE	PB1D10	Alu	chr9PB1D1031403542	NonProperStrand	1	1	-inf
chr2	22744837	22744913	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	91423922	91423938	protein_coding	Agap1	intron	ENSMUSG00000055013	ProperStrand	37	1	-7.7736
chr11	3254871	3254961	protein_coding	Limk2	intron	ENSMUSG00000020451	ProperStrand	23	chr11	3254734	3254834	sense_intronic	Gm11948	.	ENSMUSG00000087055	ProperStrand	4	1	-20.8085
chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr1	34433138	34433156	protein_coding	Gm11158	intron	ENSMUSG00000079617	NonProperStrand	17	1	-7.6341
chr1	82416297	82416406	protein_coding	Rhbdd1	intron	ENSMUSG00000026142	ProperStrand	165	chr9	78141136	78141166	protein_coding	Gm10639	intron	ENSMUSG00000074179	ProperStrand	14	2	-19.5579
chr9	101213747	101213847	LTR	MTA_Mm	MaLR	chr9MTA_Mm101213666	ProperStrand	1	chr9	101214089	101214179	LTR	MTC	MaLR	chr9MTC101214061	NonProperStrand	1	1	-inf
chr4	57932529	57932629	LTR	RLTR20B1	ERVK	chr4RLTR20B157932458	NonProperStrand	1	chr4	57932099	57932189	SINE	B2_Mm2	B2	chr4B2_Mm257932043	ProperStrand	1	1	-inf
chr13	97190545	97190570	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr18	42298434	42298513	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	ProperStrand	23	1	-7.0209
chr17	25912940	25913040	protein_coding	Narfl	intron	ENSMUSG00000002280	NonProperStrand	17	chr3	121149869	121149959	protein_coding	Cnn3	intron	ENSMUSG00000053931	ProperStrand	1	1	-inf
chr17	30397202	30397224	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	chr5	100672486	100672518	pseudogene	Gm8091	.	ENSMUSG00000085915	ProperStrand	92	1	-6.3933
chrX	74242932	74243032	DNA	RCHARR1	MER1_type	chrXRCHARR174242745	ProperStrand	7	chrX	74243095	74246083	DNA	RCHARR1	MER1_type	chrXRCHARR174242957	ProperStrand	3	1	-inf
chr15	35822974	35823015	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	chrX	105063524	105063575	protein_coding	Fam46d	intron	ENSMUSG00000073007	NonProperStrand	14	1	-13.4650
chr12	76846973	76847072	LTR	MER34A	ERV1	chr12MER34A76846618	ProperStrand	1	chr12	76847314	76847404	SINE	ID_B1	B4	chr12ID_B176847332	NonProperStrand	1	1	-inf
chr1	52637105	52637169	LTR	RLTR31_Mm	ERVK	chr1RLTR31_Mm52636675	NonProperStrand	1	chr4	59899604	59899679	protein_coding	Snx30	intron	ENSMUSG00000028385	ProperStrand	123	1	-inf
chr17	39848134	39848192	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	145853462	145867879	protein_coding	4930529M08Rik	intron	ENSMUSG00000037143	ProperStrand	37	2	-4.0770
chr6	90953069	90953159	LTR	ORR1E	MaLR	chr6ORR1E90952841	NonProperStrand	1	chr6	90953338	90953438	SINE	MIR	MIR	chr6MIR90953300	NonProperStrand	1	1	-inf
chr6	3201479	3201505	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	85438856	85438872	protein_coding	Fbxo41	intron	ENSMUSG00000047013	ProperStrand	11	1	-6.1647
chr8	61650995	61651095	LINE	L1_Mus3	L1	chr8L1_Mus361651000	NonProperStrand	1	chr14	29811443	29811533	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	112	1	-inf
chr10	40258575	40258675	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	146124298	146124388	protein_coding	Zfp600	intron	ENSMUSG00000066007	ProperStrand	4	1	-10.9810
chr15	13197374	13197474	LINE	Lx6	L1	chr15Lx613196940	NonProperStrand	1	chr15	13197576	13197666	LINE	Lx6	L1	chr15Lx613197551	NonProperStrand	1	1	-inf
chr17	39847277	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	106059116	106059199	protein_coding	Ccdc47	utr3	ENSMUSG00000078622	NonProperStrand	4	1	-4.8204
chr6	116172712	116172787	protein_coding	D6Wsu116e	intron	ENSMUSG00000024104	NonProperStrand	27	chr9	40211489	40211512	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-9.6876
chr18	60956247	60956347	SINE	B1_Mus2	Alu	chr18B1_Mus260956214	ProperStrand	1	chr18	60956425	60956515	SINE	ID_B1	B4	chr18ID_B160956360	ProperStrand	1	1	-inf
chr17	50920583	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr1	175905984	175906110	protein_coding	Ifi202b	intron	ENSMUSG00000026535	NonProperStrand	32	1	-13.5438
chr9	108249161	108249221	SINE	B1_Mur4	Alu	chr9B1_Mur4108249157	ProperStrand	1	chr9	108249110	108249159	Simple_repeat	(TTC)n	Simple_repeat	chr9(TTC)n108249118	NonProperStrand	1	1	-inf
chr2	173295973	173296040	LINE	Lx2	L1	chr2Lx2173295946	ProperStrand	2	chr2	173295540	173295628	LTR	ORR1D2	MaLR	chr2ORR1D2173295327	ProperStrand	1	1	-inf
chr11	120347794	120347831	lincRNA	Gm16755	exon	ENSMUSG00000086218	ProperStrand	60	chr2	165868219	165868328	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	1	-8.8263
chr2	24906969	24907069	protein_coding-noncoding	Pnpla7	utr5	ENSMUSG00000036833	NonProperStrand	1	chr2	24907109	24907199	protein_coding	Pnpla7	utr3	ENSMUSG00000036833	NonProperStrand	78	1	-inf
chr9	122804414	122804473	lincRNA	A530083I20Rik	intron	ENSMUSG00000086343	ProperStrand	3	chr1	134911541	134911611	protein_coding	Mdm4	intron	ENSMUSG00000054387	ProperStrand	8	2	-21.0103
chr1	95598857	95598947	LTR	RMER4A	ERVK	chr1RMER4A95598721	NonProperStrand	1	chr1	95598948	95599048	SINE	B1_Mus1	Alu	chr1B1_Mus195598972	NonProperStrand	1	1	-inf
chr12	32038035	32038135	LTR	IAP-d-int	ERVK	chr12IAP-d-int32038008	NonProperStrand	1	chr12	32037851	32037941	LTR	RLTR10A	ERVK	chr12RLTR10A32037727	NonProperStrand	1	1	-inf
chr9	27309433	27309511	Low_complexity	GA-rich	Low_complexity	chr9GA-rich27309399	ProperStrand	4	chr9	27309251	27309314	Simple_repeat	(GGGA)n	Simple_repeat	chr9(GGGA)n27309173	ProperStrand	1	1	-inf
chr17	39848245	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	122028882	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	2	-3.9363
chr13	34901551	34901573	LTR	ORR1B1	MaLR	chr13ORR1B134901507	ProperStrand	2	chr8	77573309	77573424	protein_coding	Tom1	intron	ENSMUSG00000042870	ProperStrand	14	1	-19.5799
chr17	39847082	39847246	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	24689475	24703514	protein_coding	Galntl5	intron	ENSMUSG00000028938	ProperStrand	26	3	-4.1728
chr2	157116468	157120533	protein_coding	Rpn2	intron	ENSMUSG00000027642	NonProperStrand	20	chr5	115489456	115489512	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-11.3804
chr6	136820647	136821225	SINE	B2_Mm2	B2	chr6B2_Mm2136820544	ProperStrand	4	chr6	136821245	136821335	protein_coding	Mgp	intron	ENSMUSG00000030218	ProperStrand	7	4	-inf
chr3	145646465	145646483	LTR	MTEa	MaLR	chr3MTEa145646206	ProperStrand	1	chr11	115123814	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	1	-inf
chr2	20781092	20781148	protein_coding-noncoding	Arhgap21	utr3	ENSMUSG00000036591	NonProperStrand	1	chr2	20780768	20780835	protein_coding	Arhgap21	intron	ENSMUSG00000036591	NonProperStrand	34	1	-inf
chr15	59023257	59023313	SINE	B2_Mm2	B2	chr15B2_Mm259023265	NonProperStrand	1	chr15	59021907	59021962	Simple_repeat	(GA)n	Simple_repeat	chr15(GA)n59021913	NonProperStrand	3	1	-inf
chr1	118981994	118982087	SINE	B2_Mm2	B2	chr1B2_Mm2118982011	NonProperStrand	1	chr5	140088026	140088058	Satellite	ZP3AR	Satellite	chr5ZP3AR140087659	ProperStrand	1	1	-inf
chr8	78506105	78506205	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	chr14	11554326	11721198	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-7.5944
chr17	29591076	29591166	SINE	B1_Mm	Alu	chr17B1_Mm29591027	ProperStrand	1	chr17	29591202	29591302	SINE	B3A	B2	chr17B3A29591207	NonProperStrand	1	1	-inf
chr9	17987799	17987832	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-10.3491
chr7	101966771	101966812	LINE	L1M3de	L1	chr7L1M3de101966594	NonProperStrand	1	chr7	101936127	101936178	Simple_repeat	(TCTA)n	Simple_repeat	chr7(TCTA)n101936047	ProperStrand	1	1	-inf
chr7	110059708	110059744	LINE	Lx5	L1	chr7Lx5110059319	NonProperStrand	5	chr9	123462009	123462042	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr10	83647239	83647339	Low_complexity	GA-rich	Low_complexity	chr10GA-rich83647159	NonProperStrand	1	chr10	83647370	83647460	SINE	RSINE1	B4	chr10RSINE183647395	ProperStrand	1	1	-inf
chr15	83406302	83406342	protein_coding	Ttll12	utr3	ENSMUSG00000016757	ProperStrand	38	chr15	83394431	83394517	protein_coding	Tspo	intron	ENSMUSG00000041736	NonProperStrand	36	1	-13.9825
chr12	111048395	111048513	LINE	L1_Rod	L1	chr12L1_Rod111047413	ProperStrand	2	chr15	100806955	100806992	protein_coding	Scn8a	intron	ENSMUSG00000023033	ProperStrand	29	1	-19.5186
chr2	167063478	167063556	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-5.9790
chr11	53260486	53260565	SINE	B1_Mur4	Alu	chr11B1_Mur453260465	ProperStrand	1	chr11	53260132	53260213	SINE	ID_B1	B4	chr11ID_B153260128	ProperStrand	1	1	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr2	90395146	90395172	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-9.8245
chr14	99099947	99099979	LINE	Lx5	L1	chr14Lx599099841	ProperStrand	1	chr17	39847477	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	4355931	4356014	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr5	146261165	146261224	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	2	-5.1120
chr6	108244714	108244770	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr14	29284013	29284059	protein_coding	Erc2	intron	ENSMUSG00000040640	NonProperStrand	19	1	-10.7584
chr3	99214650	99214739	LINE	L1Md_T	L1	chr3L1Md_T99210024	NonProperStrand	4	chr17	39847471	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr5	139993902	139994002	SINE	B3	B2	chr5B3139993867	ProperStrand	2	chr5	139994033	139994123	SINE	PB1D9	Alu	chr5PB1D9139994053	ProperStrand	2	2	-inf
chr10	80777929	80778011	protein_coding-noncoding	Pip5k1c	utr5	ENSMUSG00000034902	ProperStrand	5	chr10	80777636	80777709	protein_coding	Pip5k1c	intron	ENSMUSG00000034902	ProperStrand	107	1	-16.0241
chr19	46363347	46363447	LINE	Lx9	L1	chr19Lx946363343	ProperStrand	2	chr19	46363229	46363319	SINE	B2_Mm1a	B2	chr19B2_Mm1a46363163	ProperStrand	2	2	-inf
chr2	70738457	70738474	SINE	B1F2	Alu	chr2B1F270738354	NonProperStrand	1	chr18	73957069	73957158	protein_coding	Me2	intron	ENSMUSG00000024556	ProperStrand	57	1	-inf
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr8	18624822	18624947	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-7.9305
chr16	25149951	25150041	LINE	Lx3_Mus	L1	chr16Lx3_Mus25149856	NonProperStrand	1	chr16	25149669	25149769	LINE	Lx8	L1	chr16Lx825149386	NonProperStrand	1	1	-inf
chr15	27485746	27485836	protein_coding	Ank	intron	ENSMUSG00000022265	ProperStrand	72	chr15	77098008	77099263	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	3	-20.3663
chr17	39847341	39847816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	55578500	55581138	protein_coding	Myh6	intron	ENSMUSG00000040752	NonProperStrand	12	3	-5.0409
chr10	65632752	65632852	LINE	L1Md_F2	L1	chr10L1Md_F265632349	ProperStrand	1	chr10	65632966	65633056	LINE	L1_Mm	L1	chr10L1_Mm65632947	ProperStrand	1	1	-inf
chr3	93603815	93603905	LINE	L1Md_T	L1	chr3L1Md_T93603219	NonProperStrand	1	chr4	51093549	51093649	LINE	L1Md_F2	L1	chr4L1Md_F251093474	ProperStrand	1	1	-inf
chr17	39847562	39848033	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	43017825	43022028	protein_coding	Fancg	exon	ENSMUSG00000028453	ProperStrand	21	3	-3.0293
chr2	90395141	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr5	122251517	122251634	protein_coding	Atxn2	intron	ENSMUSG00000042605	NonProperStrand	41	1	-10.4886
chr5	49979072	49979110	LINE	Lx	L1	chr5Lx49978776	NonProperStrand	2	chr5	49987479	49987526	SINE	B3A	B2	chr5B3A49987438	NonProperStrand	2	1	-19.8939
chr17	39847230	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	69113472	69113521	SINE	B3A	B2	chr8B3A69113451	NonProperStrand	3	1	-5.4882
chr19	46644391	46652499	protein_coding	Arl3	intron	ENSMUSG00000025035	NonProperStrand	47	chr19	46644427	46652545	protein_coding	Sfxn2	intron	ENSMUSG00000025036	ProperStrand	20	4	-inf
chr10	40258556	40258575	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr8	23428751	23428778	protein_coding	Tpte	intron	ENSMUSG00000031481	ProperStrand	62	1	-5.2927
chr15	86491414	86491514	LINE	L1MEe	L1	chr15L1MEe86491427	NonProperStrand	1	chr15	86491221	86491311	LTR	ORR1D2	MaLR	chr15ORR1D286491115	ProperStrand	1	1	-inf
chr11	79242141	79243544	protein_coding-noncoding	Nf1	utr5	ENSMUSG00000020716	NonProperStrand	15	chr11	79239771	79244558	protein_coding	Nf1	intron	ENSMUSG00000020716	NonProperStrand	33	4	-inf
chr8	72359886	72359919	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	chr8	72354710	72354755	protein_coding	Lpar2	utr3	ENSMUSG00000031861	NonProperStrand	35	1	-11.7864
chr6	72772644	72772741	LTR	ORR1D2	MaLR	chr6ORR1D272772565	NonProperStrand	2	chr6	72771289	72771318	SINE	B3	B2	chr6B372771191	ProperStrand	6	2	-inf
chr11	69919317	69921263	LTR	RMER15	ERVL	chr11RMER1569921112	ProperStrand	14	chr17	39846453	39846932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-4.3574
chr1	63796488	63796578	protein_coding-noncoding	Fastkd2	utr5	ENSMUSG00000025962	ProperStrand	1	chr1	63796767	63796867	protein_coding	Fastkd2	intron	ENSMUSG00000025962	ProperStrand	1	1	-inf
chr5	129554059	129554080	LTR	RMER4B	ERVK	chr5RMER4B129553623	ProperStrand	1	chr5	33610480	33614705	protein_coding	Ctbp1	intron	ENSMUSG00000037373	ProperStrand	23	1	-inf
chr10	14848352	14848442	SINE	B1F	Alu	chr10B1F14848321	ProperStrand	1	chr8	71104470	71104570	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	NonProperStrand	45	1	-inf
chr16	11399960	11400062	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	chr1	87445745	87445773	pseudogene	Gm7592	.	ENSMUSG00000090186	ProperStrand	36	4	-inf
chr6	3201509	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	48255260	48255286	protein_coding	Erp44	intron	ENSMUSG00000028343	ProperStrand	37	1	-3.7789
chr12	21369242	21369283	protein_coding	Adam17	intron	ENSMUSG00000052593	ProperStrand	16	chr7	24889584	24889696	protein_coding	Zfp180	utr5	ENSMUSG00000057101	ProperStrand	154	1	-12.8181
chr2	22744883	22744918	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr15	76714799	76714902	protein_coding	Zfp7	intron	ENSMUSG00000033669	ProperStrand	15	1	-9.6092
chr17	39847244	39847295	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	97038200	97038244	SINE	B4A	B4	chr15B4A97038158	ProperStrand	2	1	-6.5615
chr16	91654914	91654996	protein_coding	Son	exon	ENSMUSG00000022961	ProperStrand	70	chr5	151395852	151395870	protein_coding	N4bp2l1	intron	ENSMUSG00000041132	ProperStrand	2	1	-19.2695
chr5	79709865	79709965	LINE	L1_Mus3	L1	chr5L1_Mus379709555	ProperStrand	1	chr5	58164073	58164163	protein_coding	Pcdh7	intron	ENSMUSG00000029108	ProperStrand	14	1	-inf
chr9	36729204	36729333	protein_coding	Pknox2	intron	ENSMUSG00000035934	ProperStrand	37	chr5	77063761	77063782	protein_coding	Cep135	intron	ENSMUSG00000036403	NonProperStrand	8	1	-17.1774
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr18	84222222	84222242	protein_coding	Tshz1	intron	ENSMUSG00000046982	NonProperStrand	3	1	-7.3534
chr6	3201470	3201520	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	47665911	47665929	protein_coding	Slk	intron	ENSMUSG00000025060	NonProperStrand	4	1	-8.3508
chr3	64043908	64043985	LINE	L1Md_A	L1	chr3L1Md_A64043176	NonProperStrand	3	chr3	64041081	64041148	LTR	RNERVK23-int	ERVK	chr3RNERVK23-int64039850	ProperStrand	3	1	-20.2168
chrX	41849066	41849134	LINE	L1MC	L1	chrXL1MC41849022	NonProperStrand	2	chr11	121309334	121309406	protein_coding	Fn3k	intron	ENSMUSG00000025175	ProperStrand	37	2	-inf
chr6	47575206	47575296	SINE	PB1D9	Alu	chr6PB1D947575229	ProperStrand	2	chr15	53322365	53322465	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	2	-inf
chr12	84173447	84173537	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	chr16	84794812	84794912	protein_coding	Jam2	intron	ENSMUSG00000053062	ProperStrand	120	2	-12.8006
chrX	112093622	112093639	LINE	L1VL2	L1	chrXL1VL2112092986	ProperStrand	1	chr13	35804565	35804674	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-inf
chr14	117098080	117098180	LTR	RMER17C	ERVK	chr14RMER17C117098099	NonProperStrand	1	chr14	117098355	117098445	LTR	RMER17C	ERVK	chr14RMER17C117098274	NonProperStrand	1	1	-inf
chrX	161980069	161980169	LINE	L1MB7	L1	chrXL1MB7161979820	ProperStrand	1	chrX	161980165	161980255	LINE	Lx3C	L1	chrXLx3C161980167	ProperStrand	1	1	-inf
chr12	55492431	55492521	LTR	RLTR10	ERVK	chr12RLTR1055492281	NonProperStrand	3	chr12	55491726	55492347	SINE	B4A	B4	chr12B4A55491539	NonProperStrand	6	3	-inf
chr17	39848229	39848363	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	107843440	107843462	protein_coding	Echdc2	intron	ENSMUSG00000028601	ProperStrand	17	1	-3.6758
chrX	142371457	142371557	LTR	IAPEz-int	ERVK	chrXIAPEz-int142365169	NonProperStrand	3	chrX	142371597	142371687	LTR	IAPLTR1a_Mm	ERVK	chrXIAPLTR1a_Mm142371603	NonProperStrand	4	3	-inf
chr14	21074715	21074788	Simple_repeat	(GGA)n	Simple_repeat	chr14(GGA)n21074616	ProperStrand	2	chr14	29848788	29848839	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	ProperStrand	70	1	-19.1050
chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	1	-11.4362
chr17	39848032	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	78293124	78293198	protein_coding	Fam172a	intron	ENSMUSG00000064138	NonProperStrand	5	1	-3.2379
chr17	39847506	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	88536393	88536505	LTR	RMER19B	ERVK	chr3RMER19B88536212	ProperStrand	1	1	-inf
chr17	48456252	48456274	protein_coding	B430306N03Rik	exon	ENSMUSG00000043740	NonProperStrand	1	chr13	35834442	35834540	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-inf
chr14	100215644	100215709	LINE	L1Md_A	L1	chr14L1Md_A100214698	NonProperStrand	3	chr17	39846008	39846083	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-7.9693
chr13	21200293	21200315	LTR	RMER13A	ERVK	chr13RMER13A21199786	ProperStrand	5	chr5	146261164	146261229	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-10.1672
chr4	74264636	74264736	LTR	RLTR25B	ERVK	chr4RLTR25B74264583	ProperStrand	2	chr2	109968089	109968128	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	2	-inf
chr18	61582625	61582725	SINE	B1_Mus1	Alu	chr18B1_Mus161582586	ProperStrand	3	chr18	61582512	61582602	Simple_repeat	(GGAAA)n	Simple_repeat	chr18(GGAAA)n61582407	ProperStrand	2	2	-inf
chr9	72620548	72620564	LINE	L1M3	L1	chr9L1M372620436	ProperStrand	1	chr9	123462127	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	122571583	122571645	lincRNA	4933405D12Rik	intron	ENSMUSG00000086397	ProperStrand	31	chr9	95904154	95904243	protein_coding	Xrn1	intron	ENSMUSG00000032410	ProperStrand	28	1	-14.9012
chr3	60550361	60550438	LINE	Lx5	L1	chr3Lx560549585	NonProperStrand	2	chr17	39846647	39846727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr12	28438148	28438248	LINE	L1_Mus1	L1	chr12L1_Mus128437502	ProperStrand	6	chr6	101116218	101116308	protein_coding	Pdzrn3	intron	ENSMUSG00000035357	NonProperStrand	5	1	-inf
chr14	65583979	65584025	protein_coding	Ints9	intron	ENSMUSG00000021975	NonProperStrand	30	chr6	140486272	140486347	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	2	-17.0815
chr17	39847174	39847229	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	121461525	121461599	LTR	MTEa	MaLR	chr9MTEa121461433	ProperStrand	2	1	-6.5615
chr8	71497995	71498101	SINE	B1_Mus1	Alu	chr8B1_Mus171497981	ProperStrand	1	chr5	114852384	114852409	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr8	124405086	124431523	protein_coding	Slc7a5	utr3	ENSMUSG00000040010	ProperStrand	56	chr8	124404990	124431637	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	6	-24.3820
chr5	56953682	56953782	Low_complexity	AT_rich	Low_complexity	chr5AT_rich56953677	NonProperStrand	1	chr5	56954162	56954252	SINE	B1_Mus1	Alu	chr5B1_Mus156954168	ProperStrand	1	1	-inf
chr17	71367119	71367229	lincRNA	Gm16724	intron	ENSMUSG00000085916	NonProperStrand	31	chr17	71346296	71346319	protein_coding	Myl12a	intron	ENSMUSG00000024048	ProperStrand	1	1	-inf
chr3	138777416	138777454	LINE	L1Md_A	L1	chr3L1Md_A138776770	ProperStrand	3	chr3	138764429	138764523	LINE	L1Md_F2	L1	chr3L1Md_F2138764085	NonProperStrand	3	1	-20.2168
chr11	106501244	106501320	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	28	chr14	27669971	27670037	protein_coding	Dnahc12	intron	ENSMUSG00000021879	ProperStrand	39	1	-14.4412
chr14	64296943	64297033	protein_coding	Xkr6	intron	ENSMUSG00000035067	NonProperStrand	62	chr14	66872168	66872268	protein_coding	Ptk2b	intron	ENSMUSG00000059456	NonProperStrand	5	1	-17.2190
chr16	91752442	91752542	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	chr17	30608770	30608829	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-5.4753
chr3	34051132	34051209	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr9	48178502	48178554	protein_coding	Fam55d	intron	ENSMUSG00000044229	ProperStrand	43	1	-11.5320
chr8	25764961	25764984	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	40	chr2	104763986	104764116	protein_coding	Ccdc73	intron	ENSMUSG00000045106	NonProperStrand	61	1	-12.8083
chr17	39847976	39848055	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	152145741	152145810	protein_coding	Rbck1	intron	ENSMUSG00000027466	ProperStrand	4	1	-3.7035
chr15	69765199	69765289	LINE	Lx	L1	chr15Lx69765113	ProperStrand	1	chr7	5409555	5409655	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	1	-inf
chr17	39846745	39847023	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	23571702	23576263	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	6	-4.2768
chr1	179138762	179138850	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr14	10983426	10983444	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	48	1	-9.2610
chr17	39848162	39848302	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	35951428	35951444	SINE	B1_Mus1	Alu	chr17B1_Mus135951331	NonProperStrand	1	1	-inf
chr5	136532972	136532993	protein_coding	2310043J07Rik	intron	ENSMUSG00000006143	NonProperStrand	16	chr2	122123778	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-11.3099
chr2	77904203	77905395	lincRNA	4930440I19Rik	intron	ENSMUSG00000085431	NonProperStrand	28	chr6	94219341	94219389	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-7.8064
chr13	74425336	74425436	protein_coding	Ahrr	intron	ENSMUSG00000021575	NonProperStrand	16	chr2	65592557	65592647	protein_coding	Scn2a1	intron	ENSMUSG00000075318	NonProperStrand	7	1	-19.4186
chr2	129093498	129093575	antisense	Gm14024	.	ENSMUSG00000085485	ProperStrand	18	chr9	123461822	123461905	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.2529
chrX	73779939	73780049	LINE	Lx2	L1	chrXLx273779912	NonProperStrand	8	chr17	45571469	45571500	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	1	-15.4636
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr4	44912518	44912544	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-11.1811
chr1	178331209	178331259	Simple_repeat	(TTATA)n	Simple_repeat	chr1(TTATA)n178331198	NonProperStrand	2	chr16	50528650	50528734	lincRNA	G730013B05Rik	intron	ENSMUSG00000085617	ProperStrand	33	1	-20.7426
chr6	116157000	116157132	LINE	L1MB8	L1	chr6L1MB8116156848	ProperStrand	1	chr18	75437179	75437197	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-inf
chr5	113332908	113333034	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int113332878	ProperStrand	9	chr5	113333039	113333135	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int113332930	ProperStrand	11	9	-inf
chrX	21164027	21164127	LINE	Lx8	L1	chrXLx821163810	ProperStrand	1	chrX	21164244	21164334	LTR	MTA_Mm	MaLR	chrXMTA_Mm21164098	NonProperStrand	1	1	-inf
chr17	10278605	10278646	SINE	PB1D9	Alu	chr17PB1D910278584	ProperStrand	1	chr17	10278451	10278507	Simple_repeat	(TCTCCC)n	Simple_repeat	chr17(TCTCCC)n10278402	NonProperStrand	1	1	-inf
chr1	106188262	106188300	LTR	IAPEz-int	ERVK	chr1IAPEz-int106186503	NonProperStrand	3	chr4	83329303	83329336	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-17.1058
chr17	12742316	12742429	LINE	Lx	L1	chr17Lx12741796	NonProperStrand	1	chr17	39847477	39847495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr18	56528298	56531535	LTR	RLTR40	ERVK	chr18RLTR4056527731	NonProperStrand	1	chr9	123462082	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	5722755	5722855	LINE	Lx3A	L1	chr3Lx3A5721817	NonProperStrand	1	chr3	5722909	5722999	LTR	RMER17A	ERVK	chr3RMER17A5722851	NonProperStrand	1	1	-inf
chr4	62611195	62611269	LTR	MTC-int	MaLR	chr4MTC-int62611001	NonProperStrand	4	chr4	62606875	62606939	SINE	B2_Mm2	B2	chr4B2_Mm262606886	NonProperStrand	1	1	-inf
chr4	117659330	117659420	antisense	9530034E10Rik	.	ENSMUSG00000086554	ProperStrand	92	chr1	89528358	89528458	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-7.1906
chr17	5623662	5623720	protein_coding	Zdhhc14	intron	ENSMUSG00000034265	ProperStrand	114	chr10	40406916	40406948	protein_coding	9030224M15Rik	intron	ENSMUSG00000045555	ProperStrand	68	1	-10.4814
chr14	105175648	105175665	LINE	Lx6	L1	chr14Lx6105175241	NonProperStrand	1	chr17	39846492	39846666	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	32940393	32940480	LINE	Lx5	L1	chr17Lx532940073	NonProperStrand	1	chr17	32937238	32937273	protein_coding	Zfp811	intron	ENSMUSG00000055202	ProperStrand	1	1	-inf
chr15	64269467	64269584	LINE	Lx8	L1	chr15Lx864269441	NonProperStrand	1	chr6	128434714	128434752	protein_coding	Pzp	intron	ENSMUSG00000030359	ProperStrand	55	1	-inf
chr17	39847674	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	38026693	38026746	LTR	RLTR13B3	ERVK	chr17RLTR13B338026295	ProperStrand	3	1	-4.3512
chr5	135643461	135643561	LINE	L2	L2	chr5L2135643387	NonProperStrand	5	chr5	135643750	135643840	SINE	B1_Mus1	Alu	chr5B1_Mus1135643767	ProperStrand	5	5	-inf
chr17	39847844	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	80283084	80283142	SINE	B1_Mm	Alu	chr10B1_Mm80283021	NonProperStrand	1	1	-inf
chr7	130715762	130715826	LINE	HAL1	L1	chr7HAL1130715616	ProperStrand	2	chr7	130699189	130699283	LINE	L1Md_F3	L1	chr7L1Md_F3130695223	NonProperStrand	21	2	-inf
chr2	23131643	23131743	LINE	L1_Mur1	L1	chr2L1_Mur123126353	NonProperStrand	4	chr2	23132013	23132103	LINE	L1_Mur1	L1	chr2L1_Mur123131991	NonProperStrand	1	1	-inf
chr1	180290055	180290073	LINE	L1M4	L1	chr1L1M4180289953	ProperStrand	2	chr13	23551598	23551640	protein_coding	Btn1a1	intron	ENSMUSG00000000706	ProperStrand	29	1	-19.5186
chr11	100504550	100504650	protein_coding	Zfp385c	intron	ENSMUSG00000014198	ProperStrand	87	chr17	74016263	74016353	protein_coding	Galnt14	intron	ENSMUSG00000024064	ProperStrand	2	1	-18.5831
chr10	98919027	98919104	LTR	MamGypLTR2	Gypsy	chr10MamGypLTR298918961	NonProperStrand	1	chr10	98917285	98917311	LTR	RLTR12A	ERVK	chr10RLTR12A98916722	ProperStrand	7	1	-inf
chr1	181827937	181828012	LTR	IAPEz-int	ERVK	chr1IAPEz-int181824444	NonProperStrand	24	chr17	31655166	31655243	protein_coding	Wdr4	intron	ENSMUSG00000024037	ProperStrand	95	1	-12.9558
chr10	10377915	10378015	LTR	MLT2C2	ERVL	chr10MLT2C210377797	ProperStrand	1	chr10	10378193	10378283	SINE	B1_Mus1	Alu	chr10B1_Mus110378178	ProperStrand	1	1	-inf
chr2	5379275	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr17	24665956	24665985	protein_coding	Rab26	intron	ENSMUSG00000079657	NonProperStrand	3	1	-10.8312
chr17	12278046	12318532	SINE	ID_B1	B4	chr17ID_B112277923	NonProperStrand	1	chr17	12318542	12318632	protein_coding	Agpat4	intron	ENSMUSG00000023827	NonProperStrand	15	1	-inf
chr13	74364689	74364707	protein_coding	Ahrr	intron	ENSMUSG00000021575	NonProperStrand	16	chr9	123461851	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr6	142935051	142935121	LTR	RLTR13B1	ERVK	chr6RLTR13B1142934567	ProperStrand	2	chr4	53860719	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-16.8810
chr17	39843867	39843940	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	59076320	59076338	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	1	-5.0546
chr2	62531144	62531244	protein_coding	Gca	utr3	ENSMUSG00000026893	NonProperStrand	1	chr2	62531500	62531590	protein_coding	Kcnh7	utr3	ENSMUSG00000059742	ProperStrand	11	1	-inf
chr14	12310552	12310605	SINE	B1_Mur1	Alu	chr14B1_Mur112310534	ProperStrand	1	chr13	97190580	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	8180757	8180798	SINE	B2_Mm2	B2	chr17B2_Mm28180757	NonProperStrand	1	chr1	182005950	182006064	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-inf
chr18	34600154	34602215	protein_coding	Pkd2l2	intron	ENSMUSG00000014503	NonProperStrand	6	chr18	34602230	34602744	protein_coding	Fam13b	intron	ENSMUSG00000036501	ProperStrand	59	1	-16.8430
chr11	109011692	109011712	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	121440834	121440857	LINE	L2	L2	chr3L2121440556	ProperStrand	1	1	-inf
chr14	67673215	67673300	protein_coding	Ppp2r2a	intron	ENSMUSG00000022052	ProperStrand	54	chr2	84514959	84515007	protein_coding	Tmx2	intron	ENSMUSG00000050043	NonProperStrand	1	1	-inf
chr9	21673212	21673297	LTR	ORR1A4	MaLR	chr9ORR1A421673183	ProperStrand	3	chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	1	-18.0574
chr17	39847440	39847470	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	10705367	10705444	SINE	B1_Mur3	Alu	chr19B1_Mur310705347	ProperStrand	1	1	-inf
chr6	49261802	49261892	LTR	LTRIS5	ERV1	chr6LTRIS549261791	NonProperStrand	1	chr6	49261662	49261761	LTR	RMER6A	ERVK	chr6RMER6A49261136	ProperStrand	5	1	-inf
chr4	109222728	109222750	LINE	L1_Mur3	L1	chr4L1_Mur3109222605	NonProperStrand	1	chr6	38156964	38157058	protein_coding	D630045J12Rik	intron	ENSMUSG00000063455	ProperStrand	34	1	-inf
chr8	115380922	115380942	protein_coding	Cntnap4	intron	ENSMUSG00000031772	ProperStrand	104	chr2	32842343	32842409	protein_coding	Garnl3	intron	ENSMUSG00000038860	ProperStrand	98	1	-9.9320
chrX	57855244	57855334	antisense	Gm14661	.	ENSMUSG00000067835	NonProperStrand	15	chr2	27146397	27146497	protein_coding	Vav2	intron	ENSMUSG00000009621	ProperStrand	38	1	-15.7876
chr14	7015372	7015462	protein_coding	Gm10408	intron	ENSMUSG00000072739	NonProperStrand	1	chr14	3822195	3822295	protein_coding	Gm3002	intron	ENSMUSG00000079399	ProperStrand	51	1	-inf
chr10	117059439	117059493	LTR	RLTR13C2	ERVK	chr10RLTR13C2117059412	NonProperStrand	1	chr19	25481839	25481906	protein_coding	Kank1	intron	ENSMUSG00000032702	ProperStrand	85	1	-inf
chr8	118356523	118356623	LTR	MTE2a	MaLR	chr8MTE2a118356483	NonProperStrand	1	chr8	118356722	118356812	LTR	ORR1E	MaLR	chr8ORR1E118356623	ProperStrand	1	1	-inf
chrX	103546138	103546228	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	ProperStrand	7	chr7	103550470	103550570	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-16.9058
chr3	133469317	133469333	LINE	L1Md_F2	L1	chr3L1Md_F2133468840	ProperStrand	1	chr8	18706970	18707105	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-inf
chr18	38245585	38245696	SINE	MIRb	MIR	chr18MIRb38245531	NonProperStrand	1	chr8	83254881	83254899	protein_coding	Smarca5	intron	ENSMUSG00000031715	ProperStrand	2	1	-inf
chr2	75211485	75211585	LINE	L1MA8	L1	chr2L1MA875211217	ProperStrand	1	chr2	75211768	75211858	SINE	PB1D7	Alu	chr2PB1D775211768	NonProperStrand	1	1	-inf
chr7	19613019	19613110	protein_coding	Sympk	intron	ENSMUSG00000023118	NonProperStrand	12	chr19	4907509	4907556	protein_coding	Dpp3	utr3	ENSMUSG00000063904	ProperStrand	50	1	-15.6789
chr4	139583328	139583438	protein_coding	Igsf21	intron	ENSMUSG00000040972	NonProperStrand	62	chr1	131573994	131574036	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-8.8999
chr2	57338923	57340065	LINE	Lx	L1	chr2Lx57336459	ProperStrand	4	chr2	57340140	57345262	LINE	Lx	L1	chr2Lx57339543	ProperStrand	2	1	-20.9262
chr1	66700990	66706462	protein_coding	Unc80	exon	ENSMUSG00000055567	ProperStrand	34	chr13	113856948	113857041	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	1	-10.8357
chr5	146261152	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	121989252	121989351	protein_coding	Insc	intron	ENSMUSG00000048782	NonProperStrand	66	2	-8.0609
chr5	122888734	122921455	protein_coding	Atp2a2	intron	ENSMUSG00000029467	ProperStrand	38	chr5	122888600	122888700	pseudogene	Gm15846	.	ENSMUSG00000079906	ProperStrand	1	1	-inf
chr17	39845964	39846036	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr9	21554241	21554325	protein_coding	Ldlr	utr3	ENSMUSG00000032193	ProperStrand	19	1	-4.0407
chr15	34528229	34528247	protein_coding	Nipal2	intron	ENSMUSG00000038879	ProperStrand	3	chr9	65201724	65201752	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-17.4070
chr9	88231675	88231754	protein_coding	Nt5e	intron	ENSMUSG00000032420	NonProperStrand	2	chr2	157769142	157769178	protein_coding	Vstm2l	intron	ENSMUSG00000037843	ProperStrand	46	1	-20.5155
chr19	46083591	46083830	lincRNA	4930505N22Rik	intron	ENSMUSG00000090325	ProperStrand	37	chr10	105238419	105238441	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-13.6736
chr3	84013342	84013443	protein_coding-noncoding	Trim2	utr3	ENSMUSG00000027993	ProperStrand	6	chr3	84028825	84028884	protein_coding	Trim2	intron	ENSMUSG00000027993	ProperStrand	141	1	-15.0805
chr17	39848182	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	76035702	76035770	protein_coding	Plec	intron	ENSMUSG00000022565	NonProperStrand	4	1	-6.6701
chr3	87086573	87088174	LINE	L1Md_F2	L1	chr3L1Md_F287085258	NonProperStrand	11	chr7	118852679	118852766	protein_coding	Galntl4	intron	ENSMUSG00000038296	ProperStrand	65	1	-15.3423
chr18	53255811	53255905	LINE	Lx9	L1	chr18Lx953255534	NonProperStrand	2	chr11	67035103	67035142	protein_coding	Myh1	exon	ENSMUSG00000056328	ProperStrand	3	2	-inf
chr12	18541113	18541203	Satellite	MMSAT4	Satellite	chr12MMSAT418541060	ProperStrand	1	chr12	23274877	23597460	Unknown	MurSatRep1	Unknown	chr12MurSatRep123274699	NonProperStrand	1	1	-inf
chr12	79346060	79346119	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	chr9	20431531	20431616	protein_coding	Fbxl12	intron	ENSMUSG00000066892	ProperStrand	9	1	-10.7842
chr2	11750631	11750720	LINE	Lx8	L1	chr2Lx811750432	NonProperStrand	1	chr7	81300897	81300966	LINE	L1ME2z	L1	chr7L1ME2z81300661	NonProperStrand	1	1	-inf
chr12	109981753	109981843	LINE	Lx3A	L1	chr12Lx3A109981728	NonProperStrand	1	chr12	109981506	109981606	LINE	Lx3B	L1	chr12Lx3B109981129	ProperStrand	1	1	-inf
chr17	39847690	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	72895593	72895633	SINE	RSINE1	B4	chr15RSINE172895524	NonProperStrand	1	1	-inf
chr2	158380786	158380963	LTR	MT2_Mm	ERVL	chr2MT2_Mm158380414	ProperStrand	3	chr2	158380973	158381073	Low_complexity	C-rich	Low_complexity	chr2C-rich158380938	ProperStrand	3	3	-inf
chr17	39847733	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	32860572	32874281	LTR	RLTR23	ERV1	chr4RLTR2332874140	NonProperStrand	1	1	-inf
chr2	11585510	11585574	protein_coding	Il2ra	intron	ENSMUSG00000026770	NonProperStrand	21	chr13	44869611	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.5559
chr2	105395664	105395724	antisense	Pax6os1	.	ENSMUSG00000086029	ProperStrand	19	chr6	125096242	125097118	protein_coding	Iffo1	intron	ENSMUSG00000038271	ProperStrand	44	1	-14.9834
chr16	17284138	17284172	protein_coding-noncoding	Pi4ka	utr3	ENSMUSG00000041720	ProperStrand	4	chr12	111795564	111795684	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	ProperStrand	236	1	-14.9637
chr6	49196230	49196320	protein_coding	Tra2a	utr3	ENSMUSG00000029817	ProperStrand	51	chr17	35993649	35993695	protein_coding	Mdc1	intron	ENSMUSG00000061607	ProperStrand	27	1	-13.9684
chr2	164106917	164107007	LINE	L1M2	L1	chr2L1M2164106759	NonProperStrand	2	chr2	164107533	164107633	LINE	L1M2	L1	chr2L1M2164107352	NonProperStrand	5	2	-inf
chr18	84289568	84289679	LINE	Lx8	L1	chr18Lx884289524	NonProperStrand	1	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	1	-inf
chr15	78896087	78896144	LTR	ORR1B1	MaLR	chr15ORR1B178896008	NonProperStrand	1	chr17	39847272	39847339	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	116225170	116225260	LTR	MTA_Mm-int	MaLR	chr12MTA_Mm-int116225189	ProperStrand	1	chr12	116225030	116225130	LTR	MTA_Mm	MaLR	chr12MTA_Mm116224794	ProperStrand	1	1	-inf
chr3	65654948	65655056	LINE	Lx5	L1	chr3Lx565654920	NonProperStrand	2	chr9	110281287	110281320	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-15.0096
chr1	87926942	87926971	SINE	ID_B1	B4	chr1ID_B187926792	ProperStrand	1	chr1	87917934	87917979	protein_coding	Spata3	intron	ENSMUSG00000026226	ProperStrand	8	1	-inf
chr15	39119449	39123292	protein_coding	Rims2	intron	ENSMUSG00000037386	ProperStrand	43	chr9	118674951	118674997	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.6300
chr17	56574671	56574698	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	78	chr5	148315311	148315328	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-10.9415
chr16	47057473	47057490	LTR	MLT1D	MaLR	chr16MLT1D47057343	NonProperStrand	16	chr4	55370322	55370370	protein_coding	Rad23b	intron	ENSMUSG00000028426	ProperStrand	31	1	-16.0668
chr17	5596297	5596342	protein_coding	Zdhhc14	intron	ENSMUSG00000034265	ProperStrand	114	chr2	91748356	91748395	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-10.1054
chrX	7921463	7921507	LINE	L1Md_F2	L1	chrXL1Md_F27921301	NonProperStrand	1	chr3	34069349	34069404	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	1	-inf
chr11	120426995	120427066	protein_coding	P4hb	intron	ENSMUSG00000025130	ProperStrand	7	chr13	97190563	97190605	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.4895
chr17	39843935	39844018	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr16	87485589	87485626	protein_coding	Cct8	intron	ENSMUSG00000025613	ProperStrand	46	1	-4.4921
chr17	39847663	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	61347249	61347273	LTR	MERVL-int	ERVL	chr17MERVL-int61345498	ProperStrand	3	1	-4.3512
chr17	39846775	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	23006476	23006528	LTR	RLTR40	ERVK	chr17RLTR4023006019	NonProperStrand	1	1	-inf
chr17	39848128	39848172	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	58243046	58243151	LTR	MER73	ERVL	chr9MER7358242836	NonProperStrand	3	1	-7.3534
chrX	160588991	160589007	protein_coding	Ace2	intron	ENSMUSG00000015405	NonProperStrand	17	chr1	73975326	73975435	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	1	-14.0865
chr13	91800927	91800988	protein_coding	Ssbp2	intron	ENSMUSG00000003992	NonProperStrand	14	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.3798
chr1	175544766	175544866	LINE	L1_Mur3	L1	chr1L1_Mur3175544701	NonProperStrand	1	chr1	175544629	175544719	Simple_repeat	(GAAA)n	Simple_repeat	chr1(GAAA)n175544624	ProperStrand	1	1	-inf
chr17	74362192	74362226	LINE	L1Md_F2	L1	chr17L1Md_F274359599	NonProperStrand	4	chr17	23548784	23548840	LINE	L1_Mur1	L1	chr17L1_Mur123547451	ProperStrand	4	1	-inf
chr1	36069142	36093829	LTR	MERVL-int	ERVL	chr1MERVL-int36088814	ProperStrand	54	chr1	36068961	36069051	LTR	RMER17C	ERVK	chr1RMER17C36068748	NonProperStrand	12	2	-inf
chr5	104723997	104724087	LINE	Lx7	L1	chr5Lx7104723915	ProperStrand	1	chr5	104724280	104724380	SINE	B4	B4	chr5B4104724283	NonProperStrand	1	1	-inf
chr16	23108951	23109013	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr7	19710985	19713674	protein_coding	Fbxo46	intron	ENSMUSG00000050428	NonProperStrand	48	1	-10.3589
chr18	77683095	77683127	LTR	ORR1D1	MaLR	chr18ORR1D177682904	NonProperStrand	1	chr18	77683212	77683234	LTR	ORR1D1	MaLR	chr18ORR1D177683192	NonProperStrand	1	1	-inf
chr12	41606925	41606947	LINE	L1M5	L1	chr12L1M541606588	NonProperStrand	2	chr12	41605566	41605694	LTR	MTB_Mm	MaLR	chr12MTB_Mm41605581	NonProperStrand	3	2	-inf
chr17	39847440	39847572	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	137869651	137869676	LTR	RLTR10-int	ERVK	chr3RLTR10-int137869157	ProperStrand	4	1	-3.7035
chr13	24835519	24835583	antisense	1700016G14Rik	.	ENSMUSG00000085861	ProperStrand	6	chr11	8506112	8506186	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	1	-12.7004
chr4	99206743	99206843	SINE	B1_Mus1	Alu	chr4B1_Mus199206696	ProperStrand	2	chr4	99206609	99206699	SINE	B3	B2	chr4B399206482	ProperStrand	2	2	-inf
chr1	90610181	90611015	LINE	L1Md_F2	L1	chr1L1Md_F290610842	ProperStrand	1	chr1	90610145	90610182	Simple_repeat	(CAT)n	Simple_repeat	chr1(CAT)n90610154	ProperStrand	1	1	-inf
chr1	50004106	50004205	LINE	L1Md_F2	L1	chr1L1Md_F250004073	NonProperStrand	1	chr1	50003877	50003967	LINE	Lx4B	L1	chr1Lx4B50003852	ProperStrand	1	1	-inf
chr1	16746287	16746377	LINE	L1VL4	L1	chr1L1VL416745852	NonProperStrand	1	chr1	16746583	16746683	Other	RMER1B	Other	chr1RMER1B16746371	NonProperStrand	1	1	-inf
chr15	49420102	49420192	LTR	RLTR13D3	ERVK	chr15RLTR13D349420077	NonProperStrand	1	chr5	15640406	15640506	protein_coding	Cacna2d1	intron	ENSMUSG00000040118	ProperStrand	8	1	-inf
chr3	45659454	45659544	LTR	MTD	MaLR	chr3MTD45659370	NonProperStrand	1	chr3	45659209	45659309	LTR	ORR1D2	MaLR	chr3ORR1D245659013	NonProperStrand	1	1	-inf
chr17	39846718	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	30716730	30717064	protein_coding	Zfp74	utr3	ENSMUSG00000059975	ProperStrand	3	1	-4.3017
chr18	47987477	47987577	LINE	L1Md_A	L1	chr18L1Md_A47987487	ProperStrand	1	chr18	47987320	47987410	LINE	L1Md_F2	L1	chr18L1Md_F247984343	NonProperStrand	1	1	-inf
chr2	151518264	151518288	LINE	Lx8	L1	chr2Lx8151517916	ProperStrand	1	chr2	151517632	151517666	Simple_repeat	(TA)n	Simple_repeat	chr2(TA)n151517627	ProperStrand	1	1	-inf
chr17	39847257	39847292	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	144336092	144336183	SINE	B4	B4	chrXB4144336118	NonProperStrand	3	1	-5.4882
chr10	80588308	80588408	SINE	B1F2	Alu	chr10B1F280588327	ProperStrand	1	chr10	80588856	80588945	SINE	B1_Mus2	Alu	chr10B1_Mus280588856	NonProperStrand	1	1	-inf
chr2	26917873	26917923	protein_coding	Tmem8c	intron	ENSMUSG00000009214	NonProperStrand	8	chr11	97680721	97680782	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	1	-14.6751
chr15	66337626	66337726	LINE	L1Md_F2	L1	chr15L1Md_F266337594	NonProperStrand	2	chr15	66337435	66337525	LINE	L1_Mus1	L1	chr15L1_Mus166337231	NonProperStrand	2	2	-inf
chr2	55595589	55595605	LINE	L1Md_F3	L1	chr2L1Md_F355591181	ProperStrand	1	chr17	39847207	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr6	58473470	58473570	LINE	Lx9	L1	chr6Lx958473352	ProperStrand	1	chr6	58473806	58473896	LINE	Lx9	L1	chr6Lx958473687	ProperStrand	1	1	-inf
chr12	28786988	28787088	LINE	L1Md_F2	L1	chr12L1Md_F228781644	ProperStrand	6	chr14	121992679	121992769	protein_coding	Dock9	intron	ENSMUSG00000025558	NonProperStrand	173	1	-14.6646
chr17	39848099	39848164	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	158627507	158627594	protein_coding	Dhx35	intron	ENSMUSG00000027655	ProperStrand	32	2	-4.4718
chr18	57546592	57546655	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	19	chrX	85070213	85070299	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	NonProperStrand	79	1	-13.8050
chr2	32547322	32547424	protein_coding	Fpgs	intron	ENSMUSG00000009566	NonProperStrand	21	chr5	122168927	122168960	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	1	-12.7433
chr10	39710119	39710154	Simple_repeat	(TATATG)n	Simple_repeat	chr10(TATATG)n39710010	NonProperStrand	1	chr10	39704269	39704333	protein_coding	BC021785	intron	ENSMUSG00000038528	ProperStrand	17	1	-inf
chr10	128023844	128023912	protein_coding	Erbb3	intron	ENSMUSG00000018166	NonProperStrand	10	chr1	151806702	151806779	protein_coding	Pla2g4a	intron	ENSMUSG00000056220	NonProperStrand	25	1	-17.4621
chr4	43492779	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr13	51648195	51648276	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	33	1	-8.2901
chr15	79962403	79962493	LTR	ORR1B1-int	MaLR	chr15ORR1B1-int79962350	ProperStrand	1	chr15	79962297	79962397	SINE	B1_Mus1	Alu	chr15B1_Mus179962312	ProperStrand	1	1	-inf
chr2	112480429	112480529	protein_coding-noncoding	Ryr3	utr3	ENSMUSG00000057378	NonProperStrand	1	chr2	112480194	112480284	protein_coding	Ryr3	intron	ENSMUSG00000057378	NonProperStrand	77	1	-inf
chr4	93335199	93335216	lincRNA	Gm12649	intron	ENSMUSG00000084833	NonProperStrand	6	chr9	123461821	123461848	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr15	84725991	84726075	LTR	RLTR44-int	ERVK	chr15RLTR44-int84725648	NonProperStrand	4	chr17	39847804	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr5	142904398	142904498	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	chr17	66027221	66027311	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	80	4	-inf
chr10	4019154	4019218	LINE	L1Md_F2	L1	chr10L1Md_F24016717	NonProperStrand	1	chr5	146261248	146261289	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-inf
chr1	92443337	92443395	LTR	MURVY-LTR	ERV1	chr1MURVY-LTR92442918	NonProperStrand	1	chr19	4788639	4788687	protein_coding	Rbm14	intron	ENSMUSG00000006456	ProperStrand	194	1	-inf
chr9	47852046	47852177	LINE	L1MEe	L1	chr9L1MEe47851455	ProperStrand	2	chr9	47853026	47853048	LTR	ORR1B1	MaLR	chr9ORR1B147852874	NonProperStrand	1	1	-inf
chr6	147054572	147054603	protein_coding	Klhdc5	intron	ENSMUSG00000040102	ProperStrand	12	chr7	141411815	141414041	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-13.0922
chr3	133527177	133527254	LINE	L1_Mus1	L1	chr3L1_Mus1133523440	ProperStrand	2	chr10	61692539	61692620	protein_coding	Tspan15	intron	ENSMUSG00000037031	NonProperStrand	51	1	-20.9863
chr5	135245793	135245883	DNA	Tigger5	MER2_type	chr5Tigger5135245779	ProperStrand	5	chr5	135245876	135245977	SINE	ID_B1	B4	chr5ID_B1135245894	NonProperStrand	5	5	-inf
chr7	96228047	96228081	LINE	L1M5	L1	chr7L1M596227789	NonProperStrand	10	chr9	40804752	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-11.0921
chr17	39843362	39843384	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	4166525	4166659	protein_coding	Lif	utr5	ENSMUSG00000034394	ProperStrand	7	1	-6.7356
chr17	39847511	39847538	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	122126688	122126721	LTR	MTD	MaLR	chr7MTD122126347	NonProperStrand	1	1	-inf
chr2	32837881	32837964	SINE	RSINE1	B4	chr2RSINE132837900	ProperStrand	1	chr2	32842239	32842314	protein_coding	Garnl3	exon	ENSMUSG00000038860	ProperStrand	98	1	-inf
chr6	33757986	33758033	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr2	145907311	145907357	protein_coding	4930529M08Rik	intron	ENSMUSG00000037143	ProperStrand	37	1	-7.7785
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	107134233	107134250	protein_coding	Glis1	intron	ENSMUSG00000034762	ProperStrand	30	1	-9.2716
chr11	120964422	120964451	LINE	Lx8	L1	chr11Lx8120963661	ProperStrand	1	chr14	19278153	19278192	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-inf
chr6	49236498	49236581	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr8	122401629	122401676	SINE	PB1D7	Alu	chr8PB1D7122401612	NonProperStrand	2	1	-16.7719
chr17	39848243	39848342	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	74803415	74803505	protein_coding	Slc30a6	intron	ENSMUSG00000024069	ProperStrand	8	1	-5.1688
chr11	82943619	82943642	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	14	chr17	39846586	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-4.3574
chr17	12915690	12915728	protein_coding	Igf2r	intron	ENSMUSG00000023830	ProperStrand	54	chr19	3371807	3371855	protein_coding	Cpt1a	intron	ENSMUSG00000024900	ProperStrand	91	1	-11.3975
chr6	136804208	136804289	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.2839
chr17	39843817	39843834	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	ProperStrand	15	chr4	84327873	84328013	SINE	B1F	Alu	chr4B1F84327897	ProperStrand	1	1	-inf
chr11	83351015	83351101	SINE	B2_Mm1t	B2	chr11B2_Mm1t83350925	NonProperStrand	5	chr10	49062872	49062891	protein_coding	Grik2	intron	ENSMUSG00000056073	ProperStrand	22	1	-20.2749
chr8	94047751	94047787	protein_coding-noncoding	Fto	utr5	ENSMUSG00000055932	ProperStrand	4	chr16	10558879	10558919	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	2	-inf
chr13	44869602	44869704	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr15	86194891	86195203	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	3	-4.7302
chr7	112773059	112773128	protein_coding	Trim3	intron	ENSMUSG00000036989	NonProperStrand	139	chr19	5490571	5492520	protein_coding	Cfl1	utr5	ENSMUSG00000056201	ProperStrand	65	1	-10.1750
chr6	98968360	98968416	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	chr14	100273882	100273928	protein_coding	Klf12	utr3	ENSMUSG00000072294	ProperStrand	41	1	-10.8855
chr15	76728036	76728126	LTR	ORR1A0	MaLR	chr15ORR1A076728021	ProperStrand	4	chr15	76727940	76728040	SINE	B1_Mm	Alu	chr15B1_Mm76727872	ProperStrand	4	4	-inf
chr18	71255097	71255162	LINE	Lx9	L1	chr18Lx971255071	ProperStrand	1	chr9	123461943	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	34348714	34350028	protein_coding	Poln	utr3	ENSMUSG00000045102	NonProperStrand	133	chr5	34346836	34348701	protein_coding	Nat8l	utr3	ENSMUSG00000048142	ProperStrand	31	6	-inf
chr14	76221657	76221757	LTR	ORR1B1	MaLR	chr14ORR1B176221375	ProperStrand	1	chr14	76222743	76222833	SINE	B1_Mus2	Alu	chr14B1_Mus276222662	ProperStrand	1	1	-inf
chr1	192745595	192745655	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr5	115489497	115489583	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-9.6036
chr3	3293408	3293508	LINE	L1Md_F	L1	chr3L1Md_F3293346	NonProperStrand	1	chr3	3293854	3293944	LINE	MusHAL1	L1	chr3MusHAL13293659	NonProperStrand	1	1	-inf
chr3	155868163	155868253	LINE	Lx2	L1	chr3Lx2155867901	NonProperStrand	1	chr3	155867970	155868070	LINE	Lx2	L1	chr3Lx2155867901	ProperStrand	1	1	-inf
chr12	80114976	80115076	LINE	L1MC1	L1	chr12L1MC180114997	NonProperStrand	1	chr12	80114632	80114722	SINE	RSINE1	B4	chr12RSINE180114607	ProperStrand	1	1	-inf
chr9	123461943	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	32145769	32145879	protein_coding	Kcnj5	intron	ENSMUSG00000032034	NonProperStrand	8	1	-4.8360
chr10	128563669	128565793	LINE	Lx5	L1	chr10Lx5128563670	NonProperStrand	10	chr4	109702070	109702170	SINE	B1_Mus1	Alu	chr4B1_Mus1109702047	NonProperStrand	2	1	-20.0413
chr17	39843840	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	24544647	24572096	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	2	-3.6813
chr19	14468346	14468430	LINE	L1MEd	L1	chr19L1MEd14468302	ProperStrand	1	chr15	91087608	91087627	protein_coding	CN725425	intron	ENSMUSG00000078932	ProperStrand	1	1	-inf
chr3	129623536	129625430	protein_coding	Ccdc109b	intron	ENSMUSG00000027994	NonProperStrand	64	chr3	129608127	129608429	protein_coding	Casp6	utr5	ENSMUSG00000027997	ProperStrand	68	3	-20.5250
chr15	34508708	34509768	protein_coding	Nipal2	intron	ENSMUSG00000038879	NonProperStrand	22	chr12	3733380	3733480	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	1	-12.5982
chr11	120347691	120347781	lincRNA	Gm16755	exon	ENSMUSG00000086218	ProperStrand	60	chr11	120347590	120347690	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	2	-17.6515
chr12	43468160	43468250	LINE	Lx	L1	chr12Lx43466485	ProperStrand	1	chr12	43468323	43468423	LTR	ORR1B2-int	MaLR	chr12ORR1B2-int43468309	ProperStrand	1	1	-inf
chr2	181608962	181609062	DNA	Kanga2_a	Tc2	chr2Kanga2_a181608891	ProperStrand	1	chr2	181608610	181608700	SINE	B3A	B2	chr2B3A181608636	ProperStrand	1	1	-inf
chr8	120517631	120517668	SINE	B4A	B4	chr8B4A120517459	NonProperStrand	1	chr8	120517408	120517473	Simple_repeat	(TATG)n	Simple_repeat	chr8(TATG)n120517359	ProperStrand	1	1	-inf
chr9	114836635	114836764	protein_coding	Gpd1l	intron	ENSMUSG00000050627	ProperStrand	25	chr7	64695305	64695324	protein_coding	Gabra5	intron	ENSMUSG00000055078	NonProperStrand	3	1	-19.8679
chr17	39846962	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	81089440	81091147	protein_coding	Sirt6	intron	ENSMUSG00000034748	ProperStrand	1	1	-inf
chr15	81092450	81092477	LINE	L1MA7	L1	chr15L1MA781092372	ProperStrand	3	chr15	81105977	81106093	LTR	LTR16A1	ERVL	chr15LTR16A181105813	NonProperStrand	6	1	-inf
chr10	77132257	77132308	SINE	B1_Mus1	Alu	chr10B1_Mus177132202	NonProperStrand	3	chr10	77132548	77132614	SINE	RSINE1	B4	chr10RSINE177132541	ProperStrand	1	1	-inf
chr14	30854723	30854785	protein_coding	Cacna1d	utr3	ENSMUSG00000015968	NonProperStrand	187	chr1	58730572	58730644	protein_coding	Als2cr12	intron	ENSMUSG00000047528	NonProperStrand	24	2	-18.2486
chr4	151849653	151849677	protein_coding	Kcnab2	intron	ENSMUSG00000028931	ProperStrand	216	chr4	151853498	151853626	protein_coding	Nphp4	intron	ENSMUSG00000039577	NonProperStrand	12	1	-12.7372
chr11	109011656	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	27337789	27337856	protein_coding	Fndc3b	intron	ENSMUSG00000039286	ProperStrand	140	1	-4.4561
chr2	150629890	150629983	protein_coding	Pygb	intron	ENSMUSG00000033059	NonProperStrand	63	chr13	97190561	97190603	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.0276
chr17	39843354	39843417	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	107127472	107127525	protein_coding	Cdh16	intron	ENSMUSG00000031881	ProperStrand	4	2	-13.2532
chr10	4088211	4088320	LINE	L1_Mm	L1	chr10L1_Mm4087839	ProperStrand	1	chr8	88528951	88529000	protein_coding	Phkb	intron	ENSMUSG00000036879	ProperStrand	35	1	-inf
chr2	89528304	89528321	LINE	L1_Mm	L1	chr2L1_Mm89527548	NonProperStrand	2	chr6	3201479	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chr5	135457079	135458183	SINE	B1_Mur1	Alu	chr5B1_Mur1135458042	ProperStrand	2	chr5	135458216	135460470	SINE	B1_Mus1	Alu	chr5B1_Mus1135460355	NonProperStrand	2	2	-inf
chr8	107096425	107096441	Simple_repeat	(GAA)n	Simple_repeat	chr8(GAA)n107096251	NonProperStrand	18	chr1	66263688	66263714	protein_coding	Mtap2	intron	ENSMUSG00000015222	ProperStrand	24	1	-16.3168
chr6	85637859	85637896	protein_coding	Alms1	intron	ENSMUSG00000063810	ProperStrand	47	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.1182
chr19	6364278	6364368	protein_coding-noncoding	Sf1	utr5	ENSMUSG00000024949	ProperStrand	6	chr19	6364364	6364464	protein_coding	Sf1	intron	ENSMUSG00000024949	ProperStrand	69	4	-inf
chr1	168809882	168809972	LINE	L1MCa	L1	chr1L1MCa168809789	ProperStrand	1	chr1	168810217	168810317	LINE	L1MCa	L1	chr1L1MCa168810081	ProperStrand	1	1	-inf
chr5	146261266	146261284	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr17	56421710	56421737	protein_coding	Plin3	intron	ENSMUSG00000024197	ProperStrand	33	1	-12.5785
chr3	101380931	101380987	protein_coding-noncoding	Atp1a1	utr3	ENSMUSG00000033161	NonProperStrand	1	chr3	101381611	101381700	protein_coding	Atp1a1	intron	ENSMUSG00000033161	NonProperStrand	130	1	-inf
chr18	68361441	68361541	protein_coding	D18Ertd653e	intron	ENSMUSG00000024544	NonProperStrand	35	chr9	57595902	57595992	protein_coding	Edc3	intron	ENSMUSG00000038957	NonProperStrand	7	1	-17.5331
chr6	121014387	121014494	protein_coding	Mical3	intron	ENSMUSG00000003178	ProperStrand	108	chr4	53483049	53483076	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	1	-10.0721
chr19	5799203	5799244	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	103187818	103187866	protein_coding	1300017J02Rik	intron	ENSMUSG00000033688	ProperStrand	4	1	-10.0252
chr16	87448102	87448192	LINE	Lx2A	L1	chr16Lx2A87448064	NonProperStrand	1	chr16	87447981	87448081	SINE	B1_Mus1	Alu	chr16B1_Mus187447919	NonProperStrand	1	1	-inf
chr4	149120029	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr7	30557272	30557630	protein_coding	Zfp84	intron	ENSMUSG00000046185	NonProperStrand	5	1	-11.7143
chr1	58694847	58694947	LINE	Lx2	L1	chr1Lx258694196	ProperStrand	1	chr1	58894227	58894317	protein_coding	Casp8	intron	ENSMUSG00000026029	ProperStrand	3	1	-inf
chr17	39848598	39848700	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	123599925	123599947	lincRNA	1110050K14Rik	intron	ENSMUSG00000087156	ProperStrand	1	1	-inf
chr8	107056366	107056403	protein_coding	Nae1	intron	ENSMUSG00000031878	ProperStrand	17	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.0412
chr7	27309316	27310182	LINE	Lx8	L1	chr7Lx827309195	NonProperStrand	1	chr17	45569335	45569507	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-inf
chrX	116450534	116450624	LINE	L1Md_F	L1	chrXL1Md_F116450491	ProperStrand	1	chrX	116450186	116450286	LINE	L1Md_T	L1	chrXL1Md_T116449542	NonProperStrand	1	1	-inf
chr10	12597107	12597207	SINE	ID_B1	B4	chr10ID_B112596980	ProperStrand	4	chr10	12597205	12597295	SINE	ID_B1	B4	chr10ID_B112597206	ProperStrand	3	3	-inf
chr2	132304909	132305205	LINE	L1Md_A	L1	chr2L1Md_A132304856	NonProperStrand	31	chr2	132304431	132304895	LTR	MTC	MaLR	chr2MTC132304322	NonProperStrand	1	1	-inf
chr10	128558856	128558910	LTR	RMER19C	ERVK	chr10RMER19C128558539	NonProperStrand	6	chr9	123461923	123461987	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr12	65589451	65589541	LINE	HAL1-3A_ME	L1	chr12HAL1-3A_ME65589445	ProperStrand	1	chr12	65589041	65589141	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n65588565	NonProperStrand	1	1	-inf
chr10	77989565	77989663	LINE	Lx6	L1	chr10Lx677989130	ProperStrand	9	chr10	77988868	77989614	LTR	RLTR26	ERVK	chr10RLTR2677988776	ProperStrand	5	4	-inf
chr17	39847428	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	60930433	60930451	SINE	B1_Mus1	Alu	chr18B1_Mus160930320	ProperStrand	1	1	-inf
chr6	39514792	39514892	SINE	B1_Mur3	Alu	chr6B1_Mur339514797	ProperStrand	1	chr6	39514915	39515005	SINE	B2_Mm2	B2	chr6B2_Mm239514938	NonProperStrand	1	1	-inf
chr4	23978478	23978569	LINE	Lx9	L1	chr4Lx923977596	ProperStrand	1	chr14	87859237	87859337	protein_coding	Tdrd3	intron	ENSMUSG00000022019	ProperStrand	3	1	-inf
chr8	111972029	111972143	LTR	RMER19A	ERVK	chr8RMER19A111971892	ProperStrand	2	chr8	111969677	111969705	SINE	B1_Mur2	Alu	chr8B1_Mur2111969596	NonProperStrand	1	1	-inf
chr8	31145211	31145250	LINE	L1_Mur3	L1	chr8L1_Mur331145011	ProperStrand	1	chr17	39847037	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	29539829	29539919	SINE	B1_Mus1	Alu	chr7B1_Mus129539773	NonProperStrand	1	chr7	29539611	29539711	SINE	B3A	B2	chr7B3A29539554	NonProperStrand	1	1	-inf
chr11	109011692	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	63815902	63816009	protein_coding	Gmps	intron	ENSMUSG00000027823	NonProperStrand	8	1	-10.2064
chr5	59664926	59665016	LINE	L1Md_F2	L1	chr5L1Md_F259664922	ProperStrand	1	chr5	59665135	59665235	LINE	L1Md_F2	L1	chr5L1Md_F259665094	ProperStrand	1	1	-inf
chr13	6644892	6644982	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr10	123160711	123160811	protein_coding	Fam19a2	intron	ENSMUSG00000044071	NonProperStrand	176	3	-13.4218
chr17	39846376	39846881	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	146261240	146261288	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	11	-4.4907
chr11	17048192	17048282	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n17048218	ProperStrand	1	chr11	17448338	17448438	misc_RNA	7SK	.	ENSMUSG00000087833	NonProperStrand	1	1	-inf
chr17	39847659	39847698	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	116170751	116170828	protein_coding-noncoding	Tub	utr5	ENSMUSG00000031028	NonProperStrand	5	1	-3.2379
chr5	115559876	115560828	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	165	chr5	115559790	115559880	pseudogene	Gm13826	.	ENSMUSG00000072692	NonProperStrand	36	4	-inf
chr11	109012009	109012049	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr13	97190570	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	6	-inf
chr17	39847889	39847913	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	63719217	63719326	LTR	ORR1B1	MaLR	chr9ORR1B163719186	NonProperStrand	1	1	-inf
chr5	146261024	146261046	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	119374464	119374548	protein_coding	1500003O03Rik	intron	ENSMUSG00000014077	NonProperStrand	37	1	-6.0103
chr17	39847551	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	104975128	104975146	protein_coding	Mrpl3	intron	ENSMUSG00000032563	ProperStrand	5	2	-5.9065
chr11	78161419	78161477	protein_coding-noncoding	Unc119	utr5	ENSMUSG00000002058	ProperStrand	1	chr11	78151643	78151698	protein_coding	Pigs	intron	ENSMUSG00000041958	ProperStrand	13	1	-inf
chr15	101070718	101070808	SINE	B1F	Alu	chr15B1F101070732	ProperStrand	1	chr15	101070604	101070704	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n101070586	NonProperStrand	1	1	-inf
chr4	38998575	38998664	LINE	L1Md_F	L1	chr4L1Md_F38996821	NonProperStrand	1	chr2	134997186	134997286	antisense	4930545L23Rik	.	ENSMUSG00000085247	ProperStrand	3	1	-inf
chr10	77053225	77053270	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	NonProperStrand	42	chrX	139334286	139334342	protein_coding	Ammecr1	intron	ENSMUSG00000042225	NonProperStrand	24	1	-14.6068
chr6	110165220	110165320	LINE	L1Md_Gf	L1	chr6L1Md_Gf110160393	ProperStrand	1	chr4	116197093	116197183	protein_coding	Ipp	intron	ENSMUSG00000028696	NonProperStrand	1	1	-inf
chr2	22936450	22936515	protein_coding	Acbd5	intron	ENSMUSG00000026781	NonProperStrand	6	chr17	17576457	17576528	protein_coding	Lix1	intron	ENSMUSG00000047786	NonProperStrand	10	1	-21.3688
chr13	18771555	18771610	LTR	RMER21A	ERV1	chr13RMER21A18770842	NonProperStrand	1	chr14	19278161	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-inf
chr1	72827536	72827626	DNA	MER113	MER1_type	chr1MER11372827485	ProperStrand	7	chr1	72827632	72827732	DNA	MER113	MER1_type	chr1MER11372827647	ProperStrand	13	7	-inf
chr19	7295089	7295155	LTR	ORR1D2	MaLR	chr19ORR1D27295069	ProperStrand	10	chr19	7291012	7291085	protein_coding	Cox8a	intron	ENSMUSG00000035885	ProperStrand	3	1	-20.3349
chr2	22744856	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr19	55339838	55339889	protein_coding	Acsl5	intron	ENSMUSG00000024981	ProperStrand	14	1	-9.7517
chr5	33518921	33519036	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr2	68894503	68894539	protein_coding	Lass6	intron	ENSMUSG00000027035	ProperStrand	71	1	-8.8095
chr11	69657518	69657812	SINE	B1_Mur1	Alu	chr11B1_Mur169657718	ProperStrand	7	chr11	69657809	69657991	SINE	B1_Mur2	Alu	chr11B1_Mur269657873	NonProperStrand	7	7	-inf
chr17	39847491	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	131360940	131361048	SINE	B1F	Alu	chr6B1F131360888	ProperStrand	1	1	-inf
chr12	3835319	3897540	protein_coding-noncoding	Dnmt3a	utr5	ENSMUSG00000020661	ProperStrand	12	chr12	3835155	3897420	protein_coding	Dnmt3a	exon	ENSMUSG00000020661	ProperStrand	101	12	-inf
chr1	63417674	63417764	LTR	MTA_Mm	MaLR	chr1MTA_Mm63417624	NonProperStrand	1	chr1	63418266	63418366	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n63418284	ProperStrand	1	1	-inf
chr6	95781084	95781184	LINE	L1Md_F2	L1	chr6L1Md_F295780900	NonProperStrand	1	chr6	95781525	95781615	LTR	ORR1B1	MaLR	chr6ORR1B195781444	NonProperStrand	1	1	-inf
chr8	33855816	33855840	LINE	L1Md_A	L1	chr8L1Md_A33850474	ProperStrand	25	chr17	70963685	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-7.9571
chr12	110717944	110718044	LINE	L1M4b	L1	chr12L1M4b110717960	ProperStrand	1	chr12	110717832	110717922	SINE	B2_Mm1a	B2	chr12B2_Mm1a110717725	ProperStrand	1	1	-inf
chr7	144498881	144498904	protein_coding	Ebf3	intron	ENSMUSG00000010476	NonProperStrand	5	chr11	88483713	88483784	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-11.4004
chr7	47188354	47188444	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	chr13	17566937	17567037	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	1	-14.1642
chr9	110230468	110230551	LTR	RMER2	ERV1	chr9RMER2110230447	NonProperStrand	1	chr9	110233960	110233993	SINE	ID4_	ID	chr9ID4_110233966	NonProperStrand	1	1	-inf
chr13	66438329	66438429	LTR	ORR1A4-int	MaLR	chr13ORR1A4-int66438089	ProperStrand	5	chr13	66438485	66438575	LTR	ORR1A4	MaLR	chr13ORR1A466438456	ProperStrand	4	4	-inf
chr2	24782893	24782983	protein_coding-noncoding	Arrdc1	utr3	ENSMUSG00000026972	ProperStrand	1	chr2	24782736	24782836	protein_coding	Arrdc1	intron	ENSMUSG00000026972	ProperStrand	1	1	-inf
chr3	79593107	79593207	DNA	MER106A	MER1_type	chr3MER106A79593114	ProperStrand	1	chr3	79592893	79592983	SINE	PB1D10	Alu	chr3PB1D1079592877	NonProperStrand	1	1	-inf
chr10	11692241	11692341	LINE	L1Md_F2	L1	chr10L1Md_F211691695	NonProperStrand	1	chr6	87628615	87628705	lincRNA	1810020O05Rik	intron	ENSMUSG00000089997	ProperStrand	5	1	-inf
chr19	47126327	47126427	SINE	B1_Mur4	Alu	chr19B1_Mur447126337	ProperStrand	2	chr19	47125084	47126312	protein_coding	Pcgf6	exon	ENSMUSG00000025050	NonProperStrand	42	2	-inf
chr16	32849980	32850033	protein_coding	1700021K19Rik	intron	ENSMUSG00000035629	ProperStrand	28	chr14	52150327	52150370	protein_coding	Gm7247	intron	ENSMUSG00000068399	ProperStrand	12	1	-16.8682
chr5	146261268	146261324	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr11	62171836	62171936	protein_coding	Ncor1	intron	ENSMUSG00000018501	NonProperStrand	20	1	-10.0968
chr17	86007430	86007492	lincRNA	Six3os1	intron	ENSMUSG00000093460	ProperStrand	25	chr2	5379295	5379367	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.2637
chr17	39847440	39848076	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	167029647	167038012	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	6	-3.7593
chr17	87979081	87979157	LTR	RMER16-int	ERVK	chr17RMER16-int87978382	NonProperStrand	3	chr6	85621184	85621251	protein_coding	Alms1	intron	ENSMUSG00000063810	ProperStrand	47	1	-18.8988
chr17	25839096	25839184	LTR	MT2A	ERVL	chr17MT2A25839052	ProperStrand	3	chr17	25838942	25839042	SINE	B4	B4	chr17B425838857	ProperStrand	3	3	-inf
chr2	68628251	68628341	SINE	B2_Mm2	B2	chr2B2_Mm268628141	NonProperStrand	1	chr2	68279658	68279758	protein_coding	Stk39	intron	ENSMUSG00000027030	NonProperStrand	12	1	-inf
chr15	80079698	80079779	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr19	9002021	9002061	protein_coding	Rom1	utr3	ENSMUSG00000071648	NonProperStrand	35	1	-9.1712
chr16	16911463	16911520	protein_coding	Ppm1f	intron	ENSMUSG00000026181	ProperStrand	31	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.2839
chr6	35943211	35943301	LINE	L1Md_A	L1	chr6L1Md_A35943144	ProperStrand	1	chr6	35943473	35943573	LINE	L1Md_A	L1	chr6L1Md_A35943359	ProperStrand	1	1	-inf
chr2	35326460	35336913	LTR	MTD	MaLR	chr2MTD35326319	ProperStrand	1	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	61847462	61847552	SINE	B1_Mus1	Alu	chr15B1_Mus161847479	NonProperStrand	1	chr15	61847725	61847825	SINE	B2_Mm2	B2	chr15B2_Mm261847630	NonProperStrand	1	1	-inf
chr2	71139072	71139172	protein_coding	Slc25a12	intron	ENSMUSG00000027010	NonProperStrand	6	chr8	18600485	18600575	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-11.6534
chr10	46632046	46632146	LINE	L1Md_F2	L1	chr10L1Md_F246632063	NonProperStrand	1	chr10	46631923	46632013	LINE	L1_Mus4	L1	chr10L1_Mus446631129	NonProperStrand	1	1	-inf
chr17	39847029	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	78090872	78090962	SINE	B3	B2	chr9B378090869	NonProperStrand	1	1	-inf
chr9	123461965	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	54888630	54888717	protein_coding	Nod1	intron	ENSMUSG00000038058	NonProperStrand	12	1	-4.0248
chr16	4480487	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	chr9	123461802	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.6937
chr7	12683054	12683154	LINE	L1_Mur3	L1	chr7L1_Mur312681823	ProperStrand	1	chr7	12634097	12634187	LINE	Lx4A	L1	chr7Lx4A12633846	NonProperStrand	1	1	-inf
chr5	45434561	45434659	LTR	LTR50	ERVL	chr5LTR5045434219	ProperStrand	3	chr5	45434665	45437874	LTR	RLTR12B	ERVK	chr5RLTR12B45437769	ProperStrand	1	1	-inf
chr19	24422518	24422611	protein_coding	Pip5k1b	intron	ENSMUSG00000024867	ProperStrand	56	chr13	44869573	44869614	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.6247
chr5	115650213	115650313	SINE	B2_Mm2	B2	chr5B2_Mm2115650114	ProperStrand	2	chr5	115650359	115650449	SINE	B4A	B4	chr5B4A115650377	ProperStrand	2	2	-inf
chr4	53860727	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr2	69861624	69861670	protein_coding	Ubr3	utr3	ENSMUSG00000044308	ProperStrand	27	1	-11.0405
chr17	39848248	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	27234000	27237386	protein_coding	Nlrp4a	intron	ENSMUSG00000040601	ProperStrand	15	1	-3.9151
chr5	114851974	114852419	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr9	118674951	118675010	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-5.7663
chr4	134470814	134472878	LTR	ORR1D2	MaLR	chr4ORR1D2134472534	NonProperStrand	6	chr4	134470723	134470813	protein_coding	Tmem50a	utr5	ENSMUSG00000028822	NonProperStrand	19	5	-21.6117
chr9	110281305	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr10	79859432	79859615	protein_coding	Mbd3	intron	ENSMUSG00000035478	NonProperStrand	98	1	-6.5890
chrX	7668041	7668076	SINE	B1_Mm	Alu	chrXB1_Mm7668041	NonProperStrand	2	chr9	123462147	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr9	47584285	47584397	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	chr19	38938481	38938521	protein_coding	Tbc1d12	intron	ENSMUSG00000048720	ProperStrand	51	2	-15.5434
chr12	33147419	33147473	LINE	L1_Mm	L1	chr12L1_Mm33147405	NonProperStrand	1	chr17	39846581	39846645	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	109011647	109011693	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	90078300	90078317	processed_transcript	Gm20528	.	ENSMUSG00000092220	ProperStrand	2	1	-13.5345
chr2	5379307	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr8	107011954	107012060	protein_coding	Ccdc79	intron	ENSMUSG00000052616	NonProperStrand	63	1	-4.4549
chr13	93441420	93441436	protein_coding	Serinc5	intron	ENSMUSG00000021703	NonProperStrand	22	chr12	109749294	109749402	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-9.8161
chr16	18251412	18251555	protein_coding-noncoding	Trmt2a	utr5	ENSMUSG00000022721	ProperStrand	4	chr8	106876398	106876472	protein_coding	Gm9853	utr3	ENSMUSG00000051554	ProperStrand	8	1	-inf
chr11	98935922	98936022	protein_coding	Tns4	intron	ENSMUSG00000017607	NonProperStrand	9	chr9	57595901	57595991	protein_coding	Edc3	intron	ENSMUSG00000038957	NonProperStrand	7	2	-20.8997
chr7	27638992	27639084	LTR	ORR1A4-int	MaLR	chr7ORR1A4-int27638306	NonProperStrand	2	chr7	27639081	27639180	SINE	B1_Mus2	Alu	chr7B1_Mus227639101	NonProperStrand	1	1	-inf
chr17	39846968	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	59948932	59949045	Other	RMER1B	Other	chr5RMER1B59948950	ProperStrand	2	2	-inf
chr17	39846807	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101321814	101321920	protein_coding	Vat1	exon	ENSMUSG00000034993	NonProperStrand	9	2	-3.9140
chr16	19305674	19305734	LTR	MYSERV16_I-int	ERVK	chr16MYSERV16_I-int19305444	ProperStrand	1	chr11	107238294	107238378	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-inf
chr14	63704333	63704423	Low_complexity	GA-rich	Low_complexity	chr14GA-rich63704218	ProperStrand	1	chr14	63704513	63704613	SINE	ID4	ID	chr14ID463704518	NonProperStrand	1	1	-inf
chr13	9834315	9834373	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr7	127972579	127972631	SINE	MIRc	MIR	chr7MIRc127972568	NonProperStrand	15	1	-11.9251
chr6	117702646	117702662	SINE	B1_Mus1	Alu	chr6B1_Mus1117702524	NonProperStrand	1	chr13	97190541	97190580	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chrX	130333728	130333818	LINE	L1Md_T	L1	chrXL1Md_T130332860	ProperStrand	3	chrX	130334146	130334246	LINE	L1Md_T	L1	chrXL1Md_T130334011	ProperStrand	1	1	-inf
chr1	89496223	89496323	LINE	L1M5	L1	chr1L1M589496186	ProperStrand	9	chr1	89496042	89496132	Simple_repeat	(TAGA)n	Simple_repeat	chr1(TAGA)n89496001	ProperStrand	2	2	-inf
chr3	135465332	135465408	LINE	L1Md_T	L1	chr3L1Md_T135464514	NonProperStrand	2	chr17	39847227	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr14	19278166	19278193	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-6.1042
chr10	23785753	23785821	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr19	47267887	47267907	protein_coding	Neurl1a	intron	ENSMUSG00000006435	NonProperStrand	150	1	-8.2209
chr15	66949824	66949914	LTR	MTEa	MaLR	chr15MTEa66949713	ProperStrand	1	chr15	66949949	66950049	LTR	ORR1E	MaLR	chr15ORR1E66949951	ProperStrand	1	1	-inf
chr5	32737991	32738091	DNA	RCHARR1	MER1_type	chr5RCHARR132737935	NonProperStrand	5	chr11	3129868	3130199	protein_coding	Eif4enif1	intron	ENSMUSG00000020454	ProperStrand	62	4	-inf
chr12	13273830	13279394	SINE	B2_Mm2	B2	chr12B2_Mm213274090	ProperStrand	1	chr12	13285184	13285284	protein_coding	Nbas	intron	ENSMUSG00000020576	ProperStrand	45	1	-inf
chr6	49244549	49244649	SINE	B1_Mus2	Alu	chr6B1_Mus249244575	NonProperStrand	4	chrX	162789502	162789592	protein_coding	Gpm6b	intron	ENSMUSG00000031342	NonProperStrand	61	2	-21.1752
chrX	151843127	151850775	LINE	Lx5	L1	chrXLx5151850668	ProperStrand	1	chr11	87458622	87458664	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-inf
chr17	39846411	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	123940988	123941051	protein_coding	Lrrc43	intron	ENSMUSG00000063409	ProperStrand	4	1	-3.6552
chr11	102888083	102888101	protein_coding	Dcakd	intron	ENSMUSG00000020935	ProperStrand	47	chr8	112913864	112913900	protein_coding	Hydin	intron	ENSMUSG00000059854	NonProperStrand	13	1	-15.6404
chr17	45336313	45336333	LINE	L1Md_T	L1	chr17L1Md_T45333678	NonProperStrand	1	chr11	45865676	45865753	protein_coding	Gm12166	exon	ENSMUSG00000091323	NonProperStrand	2	1	-inf
chr4	49653185	49653213	protein_coding	Rnf20	intron	ENSMUSG00000028309	ProperStrand	19	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.8834
chr5	146261191	146261264	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr13	91122937	91123018	protein_coding	Atg10	intron	ENSMUSG00000021619	ProperStrand	32	1	-6.2985
chr19	5799364	5799430	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr2	41344451	41344467	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-3.7822
chr11	31413308	31413408	LINE	L1_Mus3	L1	chr11L1_Mus331411407	NonProperStrand	1	chr11	31413446	31413536	LINE	L1_Mus3	L1	chr11L1_Mus331413417	NonProperStrand	1	1	-inf
chr13	96946656	96946740	LINE	Lx8	L1	chr13Lx896946663	ProperStrand	2	chr17	39847296	39847331	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr11	101542708	101542808	SINE	B1_Mus1	Alu	chr11B1_Mus1101542726	ProperStrand	1	chr11	101542850	101542940	SINE	PB1D7	Alu	chr11PB1D7101542865	ProperStrand	1	1	-inf
chr8	53681089	53681105	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	10	chr6	30366495	30366565	protein_coding	Klhdc10	intron	ENSMUSG00000029775	NonProperStrand	33	1	-16.9089
chr10	76412604	76418379	protein_coding	Pcbp3	intron	ENSMUSG00000001120	ProperStrand	179	chr10	41537764	41537850	protein_coding	Sesn1	intron	ENSMUSG00000038332	ProperStrand	16	1	-12.5161
chr1	87936882	87938235	LTR	MTEb-int	MaLR	chr1MTEb-int87937531	NonProperStrand	1	chr1	87936368	87936788	SINE	B1_Mur4	Alu	chr1B1_Mur487936340	ProperStrand	1	1	-inf
chr14	31016215	31016235	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr16	43919731	43919865	protein_coding	2610015P09Rik	intron	ENSMUSG00000022701	ProperStrand	26	1	-10.8050
chr15	67355559	67355659	LINE	L1MB3	L1	chr15L1MB367355574	ProperStrand	1	chr15	67356107	67356197	LINE	L1MB3	L1	chr15L1MB367356133	ProperStrand	1	1	-inf
chr2	49460420	49460520	LTR	IAPEz-int	ERVK	chr2IAPEz-int49460399	NonProperStrand	1	chr2	49460689	49460779	LTR	IAPEz-int	ERVK	chr2IAPEz-int49460676	NonProperStrand	1	1	-inf
chr4	88720590	88720611	lincRNA	Gm12603	intron	ENSMUSG00000085183	NonProperStrand	7	chr8	73306613	73306726	protein_coding	Mast3	intron	ENSMUSG00000031833	ProperStrand	91	2	-inf
chr17	39847036	39847099	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	135766134	135766187	SINE	PB1D10	Alu	chr1PB1D10135766121	ProperStrand	2	1	-5.3533
chr14	120341407	120341443	LINE	Lx5	L1	chr14Lx5120340694	ProperStrand	8	chr17	39845990	39846016	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-5.7717
chr5	138445266	138445288	LINE	L1Md_F2	L1	chr5L1Md_F2138444461	NonProperStrand	1	chr17	39846453	39846495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	105395474	105395585	LINE	L1_Rod	L1	chr8L1_Rod105395417	NonProperStrand	2	chrX	157165526	157165542	protein_coding	Ppef1	intron	ENSMUSG00000062168	NonProperStrand	2	1	-19.8939
chr16	70886098	70886188	LINE	L1Md_F2	L1	chr16L1Md_F270885823	ProperStrand	1	chr12	67667897	67667997	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr6	3201509	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	128839046	128839136	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	1	-5.1708
chr2	75663659	75663687	Simple_repeat	(TTTTA)n	Simple_repeat	chr2(TTTTA)n75663637	ProperStrand	11	chr1	63237497	63237600	protein_coding	Gpr1	intron	ENSMUSG00000046856	NonProperStrand	66	1	-15.2857
chr7	49140450	49140540	LINE	L1_Mus3	L1	chr7L1_Mus349138510	NonProperStrand	1	chr7	49140675	49140773	LTR	RLTR26	ERVK	chr7RLTR2649140662	ProperStrand	1	1	-inf
chr17	39847636	39847676	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	80203394	80203488	LTR	MER57A-int	ERV1	chr7MER57A-int80203414	NonProperStrand	1	1	-inf
chr18	41889002	41889102	LTR	MT2B2	ERVL	chr18MT2B241888985	NonProperStrand	2	chr18	41889129	41889220	SINE	B3A	B2	chr18B3A41889134	NonProperStrand	2	2	-inf
chr11	87863753	87863779	protein_coding	Srsf1	utr3	ENSMUSG00000018379	ProperStrand	5	chr7	28366643	28366765	protein_coding	2310022A10Rik	utr3	ENSMUSG00000049643	NonProperStrand	5	1	-inf
chr13	11362308	11362398	LINE	Lx2B	L1	chr13Lx2B11362224	NonProperStrand	1	chr13	11362568	11362668	LINE	Lx2B	L1	chr13Lx2B11362506	ProperStrand	1	1	-inf
chr5	125382577	125382667	protein_coding-noncoding	Zfp664	utr5	ENSMUSG00000079215	NonProperStrand	4	chr9	118674951	118675010	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-11.6123
chr11	97048876	97048981	protein_coding	Kpnb1	utr5	ENSMUSG00000001440	NonProperStrand	15	chr9	32196134	32196177	protein_coding	Kcnj1	intron	ENSMUSG00000041248	ProperStrand	9	1	-18.7314
chr4	132352501	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr9	15314843	15314956	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-8.1910
chr18	34349765	34357098	LTR	RLTR25B	ERVK	chr18RLTR25B34349598	ProperStrand	4	chr4	150479915	150480013	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-13.8962
chr13	47085384	47085471	LINE	L2a	L2	chr13L2a47085398	ProperStrand	1	chr2	60298442	60298512	protein_coding	Pla2r1	intron	ENSMUSG00000054580	ProperStrand	69	1	-inf
chr9	123461821	123461891	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr15	31459139	31459219	protein_coding	March6	intron	ENSMUSG00000039100	ProperStrand	11	1	-4.1956
chr17	39848623	39848711	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	95814537	95814564	LINE	Lx5	L1	chr4Lx595813423	NonProperStrand	1	1	-inf
chr7	92241071	92241171	LINE	Lx5	L1	chr7Lx592240104	NonProperStrand	1	chr10	107644358	107644448	protein_coding	Ppp1r12a	intron	ENSMUSG00000019907	ProperStrand	8	1	-inf
chr17	39843643	39843710	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	167492183	167492260	protein_coding	Tmem189	intron	ENSMUSG00000090213	ProperStrand	4	1	-7.9732
chr3	133521670	133521713	LINE	L1Md_T	L1	chr3L1Md_T133517105	ProperStrand	10	chr10	28101822	28101851	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	1	-13.8393
chr9	123462082	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	106533372	106533439	protein_coding	4933421E11Rik	intron	ENSMUSG00000056260	NonProperStrand	16	1	-3.4729
chr4	91271425	91271491	LINE	L1Md_F3	L1	chr4L1Md_F391270892	NonProperStrand	7	chr4	91270702	91270754	LINE	Lx2B	L1	chr4Lx2B91269555	NonProperStrand	2	1	-21.4874
chr14	57697951	57698106	LINE	Lx8	L1	chr14Lx857697886	ProperStrand	2	chr2	32963319	32964013	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	2	-inf
chr17	39846989	39847011	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	33381544	33381608	SINE	B1_Mus2	Alu	chr4B1_Mus233381507	NonProperStrand	1	1	-inf
chr1	113903984	113904023	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	16	chr3	145145847	145145960	protein_coding	Col24a1	intron	ENSMUSG00000028197	ProperStrand	29	1	-16.1773
chr19	16656155	16656230	protein_coding	Gna14	intron	ENSMUSG00000024697	NonProperStrand	25	chr19	41585267	41585332	protein_coding	Lcor	intron	ENSMUSG00000025019	ProperStrand	67	1	-13.5740
chr16	36751885	36751903	protein_coding	Slc15a2	exon	ENSMUSG00000022899	ProperStrand	16	chr9	123462123	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr2	132838117	132838217	LINE	L1Md_F2	L1	chr2L1Md_F2132837399	ProperStrand	4	chr2	132834822	132838119	LINE	L1_Mm	L1	chr2L1_Mm132834708	NonProperStrand	3	3	-inf
chr13	97103847	97103930	LINE	L1M5	L1	chr13L1M597103615	NonProperStrand	1	chr9	107615788	107616158	SINE	B1_Mur1	Alu	chr9B1_Mur1107615714	NonProperStrand	1	1	-inf
chr2	44861520	44861610	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	chr13	17321547	17321647	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	1	-12.9553
chr12	100343194	100343267	LINE	L1MCa	L1	chr12L1MCa100343008	NonProperStrand	1	chr12	59204655	59204718	LINE	L1Md_F	L1	chr12L1Md_F59202765	NonProperStrand	1	1	-inf
chr4	150061136	150061236	SINE	B1F2	Alu	chr4B1F2150061106	ProperStrand	1	chr4	150061033	150061123	SINE	ID_B1	B4	chr4ID_B1150061022	ProperStrand	1	1	-inf
chr15	47539994	47540137	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr9	123461802	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	6	-4.0267
chr6	47788068	47788107	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	chr9	119924792	119924885	protein_coding	Xirp1	utr3	ENSMUSG00000079243	NonProperStrand	16	1	-15.4909
chr8	110156813	110156903	LTR	MER57D	ERV1	chr8MER57D110156806	ProperStrand	1	chr8	110156970	110157070	SINE	B4	B4	chr8B4110156997	NonProperStrand	1	1	-inf
chr12	13229133	13229322	protein_coding	Ddx1	intron	ENSMUSG00000037149	ProperStrand	27	chr11	51195016	51195080	protein_coding	Col23a1	intron	ENSMUSG00000063564	NonProperStrand	66	1	-13.4459
chr12	111377205	111377305	DNA	URR1B	MER1_type	chr12URR1B111377084	NonProperStrand	1	chr12	111377372	111377462	LINE	L1ME2z	L1	chr12L1ME2z111377311	NonProperStrand	1	1	-inf
chr6	34709644	34709667	protein_coding	Cald1	intron	ENSMUSG00000029761	ProperStrand	9	chr6	34741792	34741922	protein_coding	Agbl3	intron	ENSMUSG00000038836	ProperStrand	8	2	-inf
chr10	66563838	66563900	protein_coding	Jmjd1c	intron	ENSMUSG00000037876	NonProperStrand	2	chr8	84576836	84576918	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-13.9609
chr17	39847477	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	122635682	122635698	Low_complexity	AT_rich	Low_complexity	chr3AT_rich122635678	ProperStrand	3	1	-4.3512
chr1	36051300	36051390	LTR	MTC	MaLR	chr1MTC36051270	NonProperStrand	1	chr1	36051172	36051272	LTR	ORR1B1	MaLR	chr1ORR1B136050860	NonProperStrand	1	1	-inf
chr13	58463323	58463423	DNA	URR1A	MER1_type	chr13URR1A58463170	NonProperStrand	1	chr13	58463511	58463601	LTR	RLTR18B	ERVK	chr13RLTR18B58463427	NonProperStrand	1	1	-inf
chr6	22498036	22498136	LINE	Lx6	L1	chr6Lx622497905	NonProperStrand	1	chr6	22497773	22497863	Low_complexity	CT-rich	Low_complexity	chr6CT-rich22497724	ProperStrand	1	1	-inf
chr6	84729708	84729777	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	chr16	56035807	56035888	protein_coding	Rg9mtd1	intron	ENSMUSG00000044763	ProperStrand	14	1	-12.7690
chr15	79951288	79951376	SINE	B2_Mm1a	B2	chr15B2_Mm1a79951298	NonProperStrand	1	chr15	79949562	79949611	protein_coding	Syngr1	utr3	ENSMUSG00000022415	NonProperStrand	42	1	-inf
chr17	45405926	45406028	DNA	MER58B	MER1_type	chr17MER58B45405899	NonProperStrand	1	chr17	39846479	39846516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	83925198	83925288	protein_coding	Mnd1	intron	ENSMUSG00000033752	ProperStrand	41	chr4	41093633	41093812	protein_coding	Ube2r2	intron	ENSMUSG00000036241	NonProperStrand	66	1	-12.5995
chr11	27598084	27598127	SINE	B3	B2	chr11B327597962	ProperStrand	1	chr16	32336643	32336677	protein_coding	Ubxn7	intron	ENSMUSG00000053774	ProperStrand	53	1	-inf
chr2	94154912	94154997	protein_coding	Ttc17	intron	ENSMUSG00000027194	ProperStrand	41	chr2	91620205	91620254	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-12.1630
chr2	5379251	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	30	1	-5.9007
chr5	125504657	125504731	protein_coding	Ncor2	intron	ENSMUSG00000029478	NonProperStrand	39	chr5	145130122	145130179	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	1	-11.9896
chr13	24476344	24476398	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	chr13	112578185	112578249	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-6.2587
chr13	49733681	49733789	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	chr2	32978939	32978971	protein_coding	Garnl3	intron	ENSMUSG00000038860	ProperStrand	98	1	-11.5287
chr15	68111396	68111496	LINE	Lx3_Mus	L1	chr15Lx3_Mus68108881	NonProperStrand	2	chr15	68041615	68041705	protein_coding	Zfat	intron	ENSMUSG00000022335	NonProperStrand	7	1	-21.1088
chr5	86813241	86813332	LINE	L1VL4	L1	chr5L1VL486812888	NonProperStrand	1	chr5	86813488	86813513	LINE	Lx8	L1	chr5Lx886813320	ProperStrand	1	1	-inf
chr17	39848098	39848164	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	29653362	29653418	protein_coding-noncoding	Coq4	utr3	ENSMUSG00000026798	ProperStrand	8	1	-5.1688
chr7	63157561	63157602	protein_coding	Cyfip1	intron	ENSMUSG00000030447	NonProperStrand	20	chr2	5379269	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.7119
chr13	23761023	23761098	LTR	RMER5	ERV1	chr13RMER523760834	NonProperStrand	13	chr10	105238432	105238517	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-15.8397
chr13	21200275	21200317	LTR	RMER13A	ERVK	chr13RMER13A21199786	ProperStrand	5	chr9	123461987	123462022	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr10	21480510	21480530	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	11	chr11	58156818	58160721	protein_coding	Sh3bp5l	utr3	ENSMUSG00000013646	NonProperStrand	9	1	-19.6928
chr4	56805904	56805920	protein_coding	Ikbkap	intron	ENSMUSG00000028431	ProperStrand	109	chr2	60383153	60383261	protein_coding	Pla2r1	intron	ENSMUSG00000054580	ProperStrand	69	2	-16.6054
chr17	39846816	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	97510958	97511082	SINE	B2_Mm2	B2	chr13B2_Mm297510893	NonProperStrand	5	1	-3.1907
chr4	120807534	120807624	SINE	B3	B2	chr4B3120807494	ProperStrand	1	chr4	120807364	120807464	misc_RNA	7SK	.	ENSMUSG00000064547	NonProperStrand	1	1	-inf
chr5	88670179	88670197	LINE	L1Md_A	L1	chr5L1Md_A88667948	NonProperStrand	3	chr4	117202570	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	1	-inf
chr17	39847440	39847509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	111532305	111532395	protein_coding	Stac	intron	ENSMUSG00000032502	NonProperStrand	4	1	-3.7035
chr10	12597037	12597090	SINE	ID_B1	B4	chr10ID_B112596980	ProperStrand	4	chr2	119968930	119968993	protein_coding	Ehd4	intron	ENSMUSG00000027293	ProperStrand	5	1	-inf
chr17	39847844	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	38236110	38236130	SINE	RSINE1	B4	chr6RSINE138236110	ProperStrand	1	1	-inf
chr5	118618428	118618504	SINE	B1_Mus1	Alu	chr5B1_Mus1118618367	NonProperStrand	1	chr5	118621141	118621227	protein_coding	Hrk	intron	ENSMUSG00000046607	ProperStrand	51	1	-inf
chr17	39847736	39848058	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	102167787	102174170	protein_coding	Ubtf	intron	ENSMUSG00000020923	ProperStrand	6	2	-5.2646
chr4	25048029	25048119	processed_transcript	Gm11906	.	ENSMUSG00000085885	ProperStrand	15	chr14	33967856	33967956	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-13.6249
chr13	113609086	113609139	protein_coding	Ppap2a	intron	ENSMUSG00000021759	NonProperStrand	111	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.7741
chr4	146288471	146288570	lincRNA	Gm17452	intron	ENSMUSG00000092143	NonProperStrand	6	chr9	123461935	123461962	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr18	42202688	42210057	LINE	L1MEe	L1	chr18L1MEe42210028	ProperStrand	2	chr17	39847954	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr8	78532921	78533016	LINE	L1_Mus4	L1	chr8L1_Mus478532121	ProperStrand	13	chr9	123461954	123462019	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr18	73574412	73574512	LINE	L1M5	L1	chr18L1M573574283	NonProperStrand	1	chr18	73574702	73574792	SINE	RSINE1	B4	chr18RSINE173574723	NonProperStrand	1	1	-inf
chr12	82457941	82458031	LINE	L1Md_A	L1	chr12L1Md_A82451996	NonProperStrand	3	chr12	82458358	82458458	LINE	L1Md_F	L1	chr12L1Md_F82458164	NonProperStrand	1	1	-inf
chr17	39848019	39848071	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	28415404	28415494	LTR	MTD	MaLR	chr5MTD28415420	ProperStrand	3	1	-4.3512
chr2	18392753	18392771	LTR	MTEa	MaLR	chr2MTEa18392548	ProperStrand	1	chr8	125557437	125557522	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-inf
chr12	40711052	40711144	DNA	MMAR1	Mariner	chr12MMAR140710921	ProperStrand	1	chr17	39846721	39846755	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	83547798	83547912	protein_coding	Sipa1l1	exon	ENSMUSG00000042700	NonProperStrand	18	chr2	104061537	104061576	protein_coding	D430041D05Rik	intron	ENSMUSG00000068373	NonProperStrand	21	1	-16.5851
chr11	62552785	62552882	LINE	L1M2	L1	chr11L1M262551810	NonProperStrand	43	chr4	53860724	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-10.0978
chr7	47188508	47188608	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr7	47188354	47188444	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	1	-13.6360
chr13	17928082	17928129	SINE	B1_Mur4	Alu	chr13B1_Mur417927985	NonProperStrand	1	chr9	123462090	123462127	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	72843725	72843755	protein_coding	Corin	intron	ENSMUSG00000005220	ProperStrand	23	chr15	76612435	76612488	protein_coding	Arhgap39	intron	ENSMUSG00000033697	ProperStrand	98	1	-12.9790
chr8	28773430	28773449	LINE	L1_Mur3	L1	chr8L1_Mur328772671	NonProperStrand	1	chr6	90925698	90925760	LTR	MLT1H1	MaLR	chr6MLT1H190925620	NonProperStrand	1	1	-inf
chr10	80293984	80294009	SINE	B3A	B2	chr10B3A80293824	NonProperStrand	6	chr11	78181302	78181355	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	1	-15.8894
chr6	49259825	49259868	SINE	B3A	B2	chr6B3A49259734	ProperStrand	2	chr6	49260109	49260163	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n49260112	NonProperStrand	1	1	-inf
chr13	29973046	29973093	LTR	IAPEz-int	ERVK	chr13IAPEz-int29972855	ProperStrand	39	chr1	72244301	72244399	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-12.2154
chr6	3201397	3201519	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr3	58576839	58576859	lincRNA	4930593A02Rik	intron	ENSMUSG00000087019	ProperStrand	27	1	-4.3779
chr3	37751772	37751872	LINE	L1_Mur2	L1	chr3L1_Mur237751767	NonProperStrand	1	chr3	37751676	37751766	LTR	ORR1A0	MaLR	chr3ORR1A037751421	NonProperStrand	1	1	-inf
chr17	35835053	35835122	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr17	50420127	50420161	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-7.2464
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	95650755	95650826	protein_coding	Prpf3	intron	ENSMUSG00000015748	ProperStrand	8	1	-5.1688
chr12	79453428	79453464	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	chr15	86069446	86069548	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	2	-6.3970
chr8	87709186	87709240	LTR	ETnERV-int	ERVK	chr8ETnERV-int87709012	ProperStrand	1	chr8	87709790	87709852	LTR	RLTR9A2	ERVK	chr8RLTR9A287709628	ProperStrand	1	1	-inf
chr4	25247708	25247776	LINE	Lx8	L1	chr4Lx825247377	ProperStrand	1	chr4	25246612	25246663	LINE	Lx9	L1	chr4Lx925246564	NonProperStrand	1	1	-inf
chr14	56731042	56734196	LINE	L1Md_F3	L1	chr14L1Md_F356728770	ProperStrand	10	chr17	39846703	39846793	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-3.6091
chr17	39847206	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	23551311	23551669	protein_coding	Btn1a1	intron	ENSMUSG00000000706	ProperStrand	29	4	-5.4743
chr11	109011849	109011873	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr19	4785139	4785278	protein_coding	Rbm14	utr3	ENSMUSG00000006456	ProperStrand	194	1	-3.8424
chr5	146261021	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	108568874	108568968	protein_coding	Slc25a20	intron	ENSMUSG00000032602	ProperStrand	44	1	-5.6684
chrX	75531155	75533935	LINE	L1VL1	L1	chrXL1VL175531143	ProperStrand	1	chr2	5379291	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr8	72367144	72367234	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	chr8	72344558	72344658	protein_coding	Gmip	exon	ENSMUSG00000036246	NonProperStrand	19	1	-13.0323
chr5	115489522	115489561	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr9	65201725	65201816	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-8.1938
chr14	30786598	30786698	protein_coding-noncoding	Selk	utr5	ENSMUSG00000042682	ProperStrand	1	chr14	30786511	30786601	protein_coding	Selk	intron	ENSMUSG00000042682	ProperStrand	4	1	-inf
chr7	79054617	79054716	LINE	Lx2A1	L1	chr7Lx2A179054489	ProperStrand	1	chr7	79054242	79054281	LTR	RMER17B	ERVK	chr7RMER17B79054088	ProperStrand	1	1	-inf
chr13	21172828	21172904	LINE	Lx6	L1	chr13Lx621172801	NonProperStrand	5	chr11	72498348	72498417	protein_coding	Ube2g1	utr3	ENSMUSG00000020794	NonProperStrand	4	1	-inf
chr17	39847551	39847621	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	84650638	84650681	SINE	RSINE1	B4	chr2RSINE184650586	ProperStrand	1	1	-inf
chr10	84544946	84545036	LTR	RMER16-int	ERVK	chr10RMER16-int84544958	NonProperStrand	1	chr17	39846730	39847025	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	83904764	83904781	protein_coding	Cox7a2l	intron	ENSMUSG00000024248	NonProperStrand	1	chr3	96558936	96559154	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	1	-inf
chr17	39847230	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	95742078	95742181	protein_coding	Erg	intron	ENSMUSG00000040732	ProperStrand	5	1	-4.3348
chr19	4444125	4444182	lincRNA	A930001C03Rik	intron	ENSMUSG00000087132	ProperStrand	6	chr19	4455341	4455409	protein_coding	Syt12	intron	ENSMUSG00000049303	NonProperStrand	21	1	-19.2239
chr10	12713304	12713404	LINE	L1_Rod	L1	chr10L1_Rod12712463	NonProperStrand	1	chr10	12714208	12714298	LTR	ORR1A4	MaLR	chr10ORR1A412714148	NonProperStrand	3	1	-inf
chr9	95420435	95420535	LTR	MTB-int	MaLR	chr9MTB-int95420450	NonProperStrand	1	chr9	95420578	95420668	LTR	MTB	MaLR	chr9MTB95420597	NonProperStrand	1	1	-inf
chr17	39847341	39847421	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	16368051	16368107	Simple_repeat	(GAA)n	Simple_repeat	chr7(GAA)n16368011	NonProperStrand	1	1	-inf
chr5	134373776	134373816	LINE	Lx8	L1	chr5Lx8134373690	ProperStrand	2	chr15	82455887	82455904	LTR	RLTR22_Mur	ERVK	chr15RLTR22_Mur82454153	ProperStrand	1	1	-inf
chr9	123462053	123462186	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	34903313	34910438	protein_coding	Cdc25c	intron	ENSMUSG00000044201	ProperStrand	42	2	-3.3036
chr17	39846428	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	130008281	130008408	LTR	IAP-d-int	ERVK	chrXIAP-d-int130008109	ProperStrand	1	1	-inf
chr2	22744837	22744918	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	110281288	110281339	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	3	-6.7537
chr9	55651143	55651252	protein_coding	Scaper	intron	ENSMUSG00000034007	ProperStrand	71	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.2909
chr17	39846942	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	11813470	11813514	protein_coding-noncoding	Arhgef7	utr5	ENSMUSG00000031511	ProperStrand	4	1	-3.6552
chr2	125088876	125088967	DNA	URR1A	MER1_type	chr2URR1A125088795	NonProperStrand	2	chr9	123461957	123462013	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr6	6102260	6102377	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr17	34584041	34584078	protein_coding	BC051142	intron	ENSMUSG00000057246	ProperStrand	69	1	-9.1558
chr7	83878720	83878757	protein_coding	Agbl1	intron	ENSMUSG00000025754	NonProperStrand	54	chr13	97190585	97190632	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-8.7462
chr13	21907106	21907193	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr17	34952237	34952282	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	1	-12.7597
chr9	89453582	89453626	LINE	L1Md_T	L1	chr9L1Md_T89453409	ProperStrand	1	chr16	33734065	33734099	protein_coding	Heg1	intron	ENSMUSG00000075254	ProperStrand	40	1	-inf
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	62129548	62129591	protein_coding	Stox1	intron	ENSMUSG00000036923	ProperStrand	3	1	-12.4363
chr17	39847804	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	65057063	65057082	protein_coding	Man2a1	intron	ENSMUSG00000024085	ProperStrand	3	1	-4.3512
chr10	4025764	4025807	LINE	Lx8	L1	chr10Lx84024999	NonProperStrand	4	chr12	82339443	82339521	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	1	-16.3976
chr14	121262630	121262648	LTR	ORR1E	MaLR	chr14ORR1E121262531	NonProperStrand	1	chr15	85177749	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-inf
chr7	80037620	80037648	LINE	L1Md_F3	L1	chr7L1Md_F380037038	NonProperStrand	8	chr7	80039251	80039364	LINE	L1_Mus3	L1	chr7L1_Mus380039108	ProperStrand	6	1	-inf
chr14	122216433	122216480	LINE	L1_Mus1	L1	chr14L1_Mus1122216217	ProperStrand	3	chr14	122216871	122216937	LINE	L1_Mus1	L1	chr14L1_Mus1122216803	ProperStrand	2	1	-20.2824
chr4	108087074	108091248	LTR	MERVL-int	ERVL	chr4MERVL-int108086198	NonProperStrand	3	chr4	108091249	108092839	LTR	MERVL_2A-int	ERVL	chr4MERVL_2A-int108090964	ProperStrand	3	3	-inf
chr5	64810799	64810899	LTR	MTD-int	MaLR	chr5MTD-int64810820	ProperStrand	39	chr5	64810687	64810777	LTR	ORR1A2	MaLR	chr5ORR1A264810680	NonProperStrand	2	2	-inf
chr11	95859168	95859186	protein_coding	Igf2bp1	intron	ENSMUSG00000013415	ProperStrand	6	chr7	28352541	28352622	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-16.0880
chr15	68598369	68598388	LINE	L1Md_F2	L1	chr15L1Md_F268597049	NonProperStrand	2	chr17	39847071	39847184	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr10	67131460	67131506	LTR	MLT1C	MaLR	chr10MLT1C67131295	NonProperStrand	2	chr9	15314090	15314142	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-17.8488
chr17	39847754	39847866	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	17032757	17032803	LTR	RLTR12B	ERVK	chr7RLTR12B17032690	ProperStrand	1	1	-inf
chr10	36578120	36578141	LINE	Lx6	L1	chr10Lx636578110	ProperStrand	5	chr4	116627383	116627424	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-15.4106
chr15	55045911	55046000	protein_coding	Deptor	intron	ENSMUSG00000022419	NonProperStrand	21	chr19	57945403	57945467	protein_coding	Atrnl1	intron	ENSMUSG00000054843	ProperStrand	65	2	-inf
chr2	13755653	13755777	LINE	Lx3B	L1	chr2Lx3B13755090	ProperStrand	1	chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	1	-inf
chr2	36036493	36036535	protein_coding	Mrrf	intron	ENSMUSG00000026887	NonProperStrand	5	chr8	61226271	61329250	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-14.7940
chr6	122737096	122737144	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr6	144993037	144993133	protein_coding	Bcat1	intron	ENSMUSG00000030268	ProperStrand	35	1	-10.0953
chr13	44789936	44790015	SINE	ID_B1	B4	chr13ID_B144789910	ProperStrand	1	chr5	116403873	116403920	protein_coding	Cit	intron	ENSMUSG00000029516	NonProperStrand	17	1	-inf
chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	115563358	115563421	protein_coding	Grb2	intron	ENSMUSG00000059923	NonProperStrand	19	1	-6.7578
chr2	121773859	121773959	LTR	LTRIS2	ERV1	chr2LTRIS2121773819	ProperStrand	1	chr12	55015840	55015930	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	1	-inf
chrX	87238355	87238386	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	2	-6.8875
chr8	72161358	72161422	DNA	URR1B	MER1_type	chr8URR1B72161216	ProperStrand	1	chr2	150839038	150839072	protein_coding	Ninl	intron	ENSMUSG00000068115	ProperStrand	29	1	-inf
chr6	5186490	5186580	protein_coding-noncoding	Pon3	utr3	ENSMUSG00000029759	ProperStrand	2	chr6	5186380	5186480	protein_coding	Pon3	intron	ENSMUSG00000029759	ProperStrand	3	2	-inf
chr17	39846376	39847012	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	69666153	69670966	protein_coding	Tnk1	utr3	ENSMUSG00000001583	ProperStrand	269	26	-3.4353
chr5	23658935	23658990	protein_coding	Klhl7	intron	ENSMUSG00000028986	NonProperStrand	38	chr6	38194666	38194715	protein_coding	D630045J12Rik	intron	ENSMUSG00000063455	ProperStrand	34	1	-14.0965
chr5	123355186	123355286	protein_coding	Kdm2b	intron	ENSMUSG00000029475	NonProperStrand	97	chr19	8888545	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	1	-9.4010
chr4	150907085	150907138	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr8	83906615	83906649	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-3.9617
chr19	55598339	55598355	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	chr15	102315757	102315896	protein_coding	Pcbp2	intron	ENSMUSG00000056851	ProperStrand	58	1	-9.0628
chr14	21611256	21611349	protein_coding	Camk2g	intron	ENSMUSG00000021820	NonProperStrand	161	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-9.2508
chr1	181818988	181819943	LTR	MTD	MaLR	chr1MTD181819365	ProperStrand	2	chr1	181820714	181820804	LTR	ORR1E	MaLR	chr1ORR1E181820652	NonProperStrand	3	2	-inf
chr18	21093477	21093495	SINE	B2_Mm2	B2	chr18B2_Mm221093352	ProperStrand	1	chr5	114852002	114852030	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr8	115042599	115042652	LTR	MTD	MaLR	chr8MTD115042287	ProperStrand	1	chr13	47136819	47136900	protein_coding	Tpmt	utr5	ENSMUSG00000021376	NonProperStrand	1	1	-inf
chr13	11588932	11588948	LINE	L1Md_F2	L1	chr13L1Md_F211588111	ProperStrand	1	chr11	120346091	120346205	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	1	-inf
chr7	68034314	68034414	LINE	Lx3_Mus	L1	chr7Lx3_Mus68034309	ProperStrand	11	chr7	68034183	68034273	LINE	Lx9	L1	chr7Lx968033931	ProperStrand	1	1	-inf
chr6	3201509	3201561	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	9626133	9626150	protein_coding	Spef2	intron	ENSMUSG00000072663	NonProperStrand	8	1	-6.8272
chr6	115807969	115808098	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	chr2	29477770	29477786	protein_coding	Rapgef1	intron	ENSMUSG00000039844	NonProperStrand	7	2	-inf
chr13	21172825	21172924	LINE	Lx6	L1	chr13Lx621172801	NonProperStrand	5	chr15	8116442	8116483	LTR	MYSERV16_I-int	ERVK	chr15MYSERV16_I-int8116446	NonProperStrand	1	1	-inf
chr2	22744845	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr15	64005854	64005931	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	1	-3.5611
chr6	119787566	119787656	protein_coding	Erc1	intron	ENSMUSG00000030172	NonProperStrand	10	chr6	72093972	72094072	protein_coding	St3gal5	intron	ENSMUSG00000056091	ProperStrand	9	1	-20.1232
chr1	165874386	165874450	protein_coding	Scyl3	intron	ENSMUSG00000026584	NonProperStrand	38	chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-11.3762
chr2	167953067	167953157	SINE	B2_Mm1t	B2	chr2B2_Mm1t167952973	NonProperStrand	3	chr2	167953187	167953287	SINE	B4A	B4	chr2B4A167953142	NonProperStrand	3	3	-inf
chr7	46810305	46810366	LINE	L1MC	L1	chr7L1MC46810209	NonProperStrand	1	chr17	39847440	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39848219	39848319	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	28152903	28152993	protein_coding	Anks1	intron	ENSMUSG00000024219	NonProperStrand	25	3	-7.6860
chr19	37329164	37330431	LTR	MER77	ERVL	chr19MER7737329103	ProperStrand	2	chr19	37287035	37287118	protein_coding	March5	intron	ENSMUSG00000023307	NonProperStrand	13	1	-inf
chr13	75714365	75714415	LINE	L1Md_A	L1	chr13L1Md_A75714044	ProperStrand	1	chr13	75719665	75719703	LINE	Lx7	L1	chr13Lx775718335	ProperStrand	1	1	-inf
chr15	101261177	101261258	LTR	MTC	MaLR	chr15MTC101260863	ProperStrand	1	chr15	101267301	101267351	protein_coding	Krt83	intron	ENSMUSG00000047641	NonProperStrand	30	1	-inf
chr9	91700748	91700848	LINE	L1Md_F2	L1	chr9L1Md_F291699846	NonProperStrand	1	chr9	84692474	84692564	LINE	Lx9	L1	chr9Lx984692449	NonProperStrand	1	1	-inf
chr11	119190899	119197114	protein_coding	Card14	intron	ENSMUSG00000013483	NonProperStrand	31	chr9	123462080	123462164	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-4.1009
chr17	39847471	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	46747167	46747229	protein_coding-noncoding	Tmed7	utr3	ENSMUSG00000033184	NonProperStrand	1	1	-inf
chr17	61811638	61811728	LTR	MTE2b-int	MaLR	chr17MTE2b-int61811631	ProperStrand	1	chr17	61811319	61811419	LTR	MTE2b	MaLR	chr17MTE2b61811306	ProperStrand	1	1	-inf
chr17	65657978	65658048	protein_coding	Tmem232	intron	ENSMUSG00000045036	ProperStrand	160	chr10	52265408	52265488	protein_coding	Zfa	utr5	ENSMUSG00000049576	NonProperStrand	11	1	-13.5223
chr7	29472059	29472110	LTR	MERVL_2A-int	ERVL	chr7MERVL_2A-int29470576	NonProperStrand	5	chr9	123461882	123461923	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr3	95627817	95627907	SINE	B2_Mm2	B2	chr3B2_Mm295627774	NonProperStrand	2	chr3	95627981	95628081	SINE	MIRb	MIR	chr3MIRb95627972	ProperStrand	1	1	-inf
chr9	66508807	66508907	SINE	B1_Mur1	Alu	chr9B1_Mur166508821	NonProperStrand	1	chr9	66508680	66508772	SINE	B1_Mur3	Alu	chr9B1_Mur366508631	ProperStrand	1	1	-inf
chr13	22034792	22034863	antisense	Gm11280	.	ENSMUSG00000085393	ProperStrand	5	chr9	123461935	123461976	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr4	21343849	21343949	LINE	L1Md_F2	L1	chr4L1Md_F221343852	NonProperStrand	1	chr4	21344122	21344212	SINE	B3A	B2	chr4B3A21344008	NonProperStrand	1	1	-inf
chr5	64812027	64812054	LTR	MTD	MaLR	chr5MTD64811860	ProperStrand	1	chr5	64807659	64807782	LTR	ORR1A2	MaLR	chr5ORR1A264807527	NonProperStrand	4	1	-inf
chr17	39848486	39848576	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr12	55399088	55399190	Simple_repeat	(TTCC)n	Simple_repeat	chr12(TTCC)n55399080	ProperStrand	1	1	-inf
chr17	39843510	39843558	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	66096441	66096544	protein_coding	Dapk2	intron	ENSMUSG00000032380	NonProperStrand	28	1	-3.9511
chr18	47060533	47060635	protein_coding	4833403I15Rik	intron	ENSMUSG00000024481	ProperStrand	77	chr18	47060444	47060534	snRNA	ENSMUSG00000065690_U6	.	ENSMUSG00000065690	ProperStrand	1	1	-inf
chr6	3201469	3201526	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	34441309	34442710	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	2	-6.4835
chr15	95849789	95849889	LTR	RMER19B	ERVK	chr15RMER19B95849808	ProperStrand	11	chr15	95849695	95849785	Simple_repeat	(TA)n	Simple_repeat	chr15(TA)n95849707	ProperStrand	11	11	-inf
chr16	38445946	38445991	protein_coding	Adprh	exon	ENSMUSG00000002844	ProperStrand	17	chr17	7253464	7253525	protein_coding	Gm1604b	intron	ENSMUSG00000073470	ProperStrand	137	1	-12.9272
chr3	74638122	74638222	LINE	L1_Mur3	L1	chr3L1_Mur374638117	ProperStrand	1	chr3	74638386	74638476	LTR	IAPLTR1a_Mm	ERVK	chr3IAPLTR1a_Mm74638255	NonProperStrand	1	1	-inf
chr9	67953817	67953874	LINE	Lx4A	L1	chr9Lx4A67953513	NonProperStrand	1	chr17	39846920	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	50382559	50382591	LINE	L1MA5	L1	chr11L1MA550382333	NonProperStrand	5	chr7	139948391	139948481	protein_coding	Fam53b	intron	ENSMUSG00000030956	NonProperStrand	73	1	-16.8689
chr2	93738846	93738946	LTR	MTE-int	MaLR	chr2MTE-int93738582	NonProperStrand	1	chr2	93738418	93738508	SINE	B1F1	Alu	chr2B1F193738381	NonProperStrand	1	1	-inf
chrX	13077155	13077233	LINE	L1MD	L1	chrXL1MD13077070	ProperStrand	1	chr17	39847277	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr1	156064882	156064982	LINE	L1MA4	L1	chr1L1MA4156064390	NonProperStrand	3	chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr7	3645351	3645367	protein_coding	Tsen34	utr5	ENSMUSG00000035585	ProperStrand	35	chr10	62863595	62863713	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-12.3414
chr4	53860703	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr1	90256549	90256618	protein_coding	Trpm8	intron	ENSMUSG00000036251	ProperStrand	18	1	-11.8697
chr11	96264630	96264765	DNA	MER5A1	MER1_type	chr11MER5A196264639	ProperStrand	2	chr11	96264740	96264875	Simple_repeat	(TC)n	Simple_repeat	chr11(TC)n96264746	ProperStrand	2	2	-inf
chr18	76931167	76931267	LTR	MLT1N2	MaLR	chr18MLT1N276931156	ProperStrand	1	chr2	130958042	130958082	protein_coding	Hspa12b	intron	ENSMUSG00000074793	ProperStrand	11	1	-inf
chr6	3201474	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	22899799	22899871	protein_coding-noncoding	Cct4	utr5	ENSMUSG00000007739	NonProperStrand	2	1	-10.1342
chr1	119342415	119342515	LTR	ORR1E	MaLR	chr1ORR1E119342397	NonProperStrand	2	chr1	119342265	119342355	Low_complexity	GA-rich	Low_complexity	chr1GA-rich119342211	ProperStrand	2	2	-inf
chr2	150345877	150345967	LINE	L1_Mus4	L1	chr2L1_Mus4150345686	ProperStrand	1	chr2	150345516	150345616	LINE	Lx4A	L1	chr2Lx4A150344784	ProperStrand	2	1	-inf
chr4	98517440	98517540	LINE	L1M4	L1	chr4L1M498517447	NonProperStrand	1	chr4	100495658	100496565	protein_coding	Cachd1	intron	ENSMUSG00000028532	ProperStrand	12	1	-inf
chr13	22395293	22395311	LTR	MER67C	ERV1	chr13MER67C22395138	ProperStrand	1	chr5	147094275	147094383	protein_coding	Cdk8	intron	ENSMUSG00000029635	ProperStrand	81	1	-inf
chr9	57110637	57110737	SINE	MIRc	MIR	chr9MIRc57110657	ProperStrand	2	chr9	57108819	57110596	protein_coding	1700017B05Rik	intron	ENSMUSG00000032300	NonProperStrand	7	2	-inf
chr7	6396155	6396209	SINE	RSINE1	B4	chr7RSINE16396074	NonProperStrand	1	chr7	6393807	6393896	protein_coding-noncoding	Gm16532	utr3	ENSMUSG00000045929	ProperStrand	2	1	-inf
chr7	84585311	84585341	LINE	Lx5	L1	chr7Lx584584864	ProperStrand	2	chr9	40802487	40802527	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-14.8938
chr6	39324597	39324640	protein_coding	Slc37a3	intron	ENSMUSG00000029924	ProperStrand	41	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.2288
chr7	6608802	6608882	LTR	ORR1B1	MaLR	chr7ORR1B16608608	NonProperStrand	2	chr2	25222455	25222512	SINE	B1_Mur4	Alu	chr2B1_Mur425222408	ProperStrand	2	1	-19.8939
chr11	60805605	60805679	LTR	ORR1E-int	MaLR	chr11ORR1E-int60805615	NonProperStrand	1	chr11	60805457	60805511	LTR	ORR1E	MaLR	chr11ORR1E60805273	NonProperStrand	1	1	-inf
chr17	39847884	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	67130611	67130662	Simple_repeat	(TC)n	Simple_repeat	chr10(TC)n67130623	ProperStrand	1	1	-inf
chr10	128458455	128458478	LINE	L1Md_F2	L1	chr10L1Md_F2128452461	ProperStrand	2	chr17	39846352	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr10	40258559	40258591	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	106653224	106653334	protein_coding	Ssbp3	intron	ENSMUSG00000061887	NonProperStrand	25	1	-7.0925
chr10	76860593	76860632	protein_coding	Adarb1	intron	ENSMUSG00000020262	ProperStrand	178	chr13	104083223	104083252	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	1	-8.1320
chr6	104184544	104184644	LINE	L1_Mus2	L1	chr6L1_Mus2104184560	NonProperStrand	1	chr6	104184296	104184386	LINE	Lx6	L1	chr6Lx6104184050	ProperStrand	1	1	-inf
chr17	39848506	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chrX	57391456	57391521	protein_coding	Mcf2	intron	ENSMUSG00000031139	ProperStrand	7	2	-9.5644
chr18	41668903	41668920	LINE	Lx5	L1	chr18Lx541666997	ProperStrand	1	chr17	39847560	39847603	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	29737357	29856076	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	ProperStrand	78	chr9	118674950	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-8.9339
chr10	75834605	75834621	protein_coding	Pcnt	intron	ENSMUSG00000001151	NonProperStrand	11	chr9	120959808	120959926	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-12.5945
chr4	43934574	43934638	protein_coding	Reck	intron	ENSMUSG00000028476	ProperStrand	19	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.4076
chr17	39847442	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	59231607	59231673	LTR	ORR1D2	MaLR	chr2ORR1D259231452	ProperStrand	2	1	-5.4040
chr5	146273018	146273095	LINE	L1Md_A	L1	chr5L1Md_A146272867	ProperStrand	1	chr17	39846818	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	chr4	57709702	57709719	protein_coding	Palm2	intron	ENSMUSG00000090053	NonProperStrand	9	1	-12.5128
chr4	107639808	107639853	LTR	RMER10A	ERVL	chr4RMER10A107639555	ProperStrand	1	chr4	107636561	107636655	SINE	ID_B1	B4	chr4ID_B1107636449	NonProperStrand	1	1	-inf
chr11	60809098	60809188	LTR	ORR1C2	MaLR	chr11ORR1C260809022	ProperStrand	1	chr11	60809309	60809409	SINE	B1_Mur4	Alu	chr11B1_Mur460809338	NonProperStrand	1	1	-inf
chr10	17124520	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr5	121205007	121205147	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-7.6806
chr8	125422678	125433232	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	chr7	117631436	117631453	protein_coding	Sbf2	intron	ENSMUSG00000038371	NonProperStrand	46	1	-8.5749
chr8	83654992	83655022	LINE	L1_Mus2	L1	chr8L1_Mus283653990	NonProperStrand	4	chr8	83660334	83660432	LTR	RLTR13D5	ERVK	chr8RLTR13D583659382	NonProperStrand	1	1	-inf
chr5	148315311	148315328	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	chr6	87842092	87842119	protein_coding	Copg	intron	ENSMUSG00000030058	NonProperStrand	31	1	-12.8056
chr2	167029647	167031335	protein_coding	Ptgis	intron	ENSMUSG00000017969	ProperStrand	43	chr1	20806758	20806864	protein_coding	Mcm3	exon	ENSMUSG00000041859	ProperStrand	38	1	-13.6204
chr10	82955292	82955366	protein_coding	Aldh1l2	exon	ENSMUSG00000020256	ProperStrand	30	chr16	22255035	22255079	protein_coding	Tra2b	utr5	ENSMUSG00000022858	ProperStrand	57	1	-13.5298
chr6	7040745	7040804	LINE	L1_Mus1	L1	chr6L1_Mus17040266	ProperStrand	1	chr5	149159702	149159745	protein_coding	Slc7a1	intron	ENSMUSG00000041313	ProperStrand	26	1	-inf
chr18	25244894	25244985	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	chr6	130110918	130110941	pseudogene	Klra14	.	ENSMUSG00000072721	NonProperStrand	1	1	-inf
chr9	67599871	67599970	LTR	RLTR6-int	ERV1	chr9RLTR6-int67599387	ProperStrand	1	chr12	78350926	78350985	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr3	86846282	86846369	LINE	L1_Mus3	L1	chr3L1_Mus386846276	ProperStrand	2	chr17	39846646	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr3	5666248	5666348	LINE	L1_Mm	L1	chr3L1_Mm5665695	ProperStrand	1	chr3	4749652	4749742	LINE	Lx3A	L1	chr3Lx3A4748218	NonProperStrand	2	1	-inf
chr18	75674505	75674606	lincRNA	Gm10532	intron	ENSMUSG00000073534	ProperStrand	1	chr18	75745736	75745826	protein_coding	Ctif	intron	ENSMUSG00000052928	NonProperStrand	13	1	-inf
chr17	39848152	39848199	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	75388971	75389059	protein_coding	Speg	intron	ENSMUSG00000026207	ProperStrand	12	1	-4.3503
chr18	77775832	77777620	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	chr13	97190542	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-5.2571
chr17	39848140	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	118985928	118986006	LTR	RLTR10	ERVK	chr1RLTR10118985610	NonProperStrand	6	1	-5.7734
chr11	109011658	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	4785600	4785694	LTR	RMER19B	ERVK	chr1RMER19B4785494	ProperStrand	1	1	-inf
chr14	105181692	105181782	LINE	L1MA8	L1	chr14L1MA8105181650	NonProperStrand	1	chr14	105181507	105181607	LINE	L1_Mus2	L1	chr14L1_Mus2105181358	NonProperStrand	1	1	-inf
chr17	39846138	39846196	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr10	71272220	71272268	Simple_repeat	(TA)n	Simple_repeat	chr10(TA)n71272145	NonProperStrand	1	1	-inf
chr7	56135087	56135152	lincRNA	Gm2788	intron	ENSMUSG00000085995	ProperStrand	6	chr7	56100379	56103757	protein_coding	Csrp3	intron	ENSMUSG00000030470	NonProperStrand	22	2	-inf
chr2	44861491	44861596	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	chr5	8450339	8450446	protein_coding	Slc25a40	intron	ENSMUSG00000054099	ProperStrand	50	3	-inf
chr13	58128016	58128088	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	chr8	75110211	75110376	protein_coding	Tmem38a	utr3	ENSMUSG00000031791	ProperStrand	39	1	-10.3505
chr9	120128504	120128556	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120128151	ProperStrand	6	chr9	40804757	40804815	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-12.1894
chr13	11658092	11658110	protein_coding	Ryr2	intron	ENSMUSG00000021313	ProperStrand	81	chr14	21542645	21542666	protein_coding	2310021P13Rik	utr3	ENSMUSG00000021819	ProperStrand	60	1	-11.4190
chr15	102189568	102189658	protein_coding	Sp7	exon	ENSMUSG00000060284	ProperStrand	18	chrX	6106973	6107012	protein_coding	Shroom4	intron	ENSMUSG00000068270	ProperStrand	12	1	-17.7491
chr6	3201485	3201534	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	79094290	79094383	protein_coding	Baiap2l2	intron	ENSMUSG00000018126	NonProperStrand	26	1	-4.4507
chr7	112326541	112326631	LTR	MTD	MaLR	chr7MTD112326564	NonProperStrand	1	chr7	112326206	112326306	SINE	B4	B4	chr7B4112326206	ProperStrand	1	1	-inf
chr10	23785344	23785413	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr5	115147298	115147388	LTR	MTE2a	MaLR	chr5MTE2a115147064	NonProperStrand	2	1	-17.4876
chr7	65761629	65761729	LTR	MTE-int	MaLR	chr7MTE-int65761570	ProperStrand	1	chr7	65761727	65761817	SINE	B1F	Alu	chr7B1F65761704	NonProperStrand	1	1	-inf
chr17	39846955	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	8627599	8627632	Simple_repeat	(GAAA)n	Simple_repeat	chr11(GAAA)n8627594	NonProperStrand	1	1	-inf
chr13	29933243	29933276	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr5	128412362	128412481	protein_coding	Tmem132d	intron	ENSMUSG00000034310	ProperStrand	110	1	-6.7445
chr10	37183978	37184068	LINE	L1MB1	L1	chr10L1MB137183633	ProperStrand	1	chr10	37184295	37184395	LINE	L1VL2	L1	chr10L1VL237184219	ProperStrand	1	1	-inf
chr17	39843004	39843039	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr8	70786231	70786268	LTR	ORR1B2	MaLR	chr8ORR1B270786235	NonProperStrand	1	1	-inf
chr4	86123644	86123734	protein_coding	Fam154a	intron	ENSMUSG00000028492	ProperStrand	5	chr10	73738989	73739089	protein_coding	Pcdh15	intron	ENSMUSG00000052613	NonProperStrand	45	1	-17.7928
chr1	55158549	55158599	LTR	RMER19B	ERVK	chr1RMER19B55158110	NonProperStrand	1	chr13	98751147	98751241	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	1	-inf
chr2	22744878	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr18	35557110	35557229	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-3.3488
chr17	39846419	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	36770108	36770277	pseudogene	Gm6542	.	ENSMUSG00000085172	NonProperStrand	2	2	-inf
chr3	95281565	95281587	protein_coding	Arnt	intron	ENSMUSG00000015522	ProperStrand	26	chr16	57396455	57396472	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	20	1	-15.9651
chr13	36303102	36303202	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	chr14	33967467	33967557	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	3	-17.2724
chr16	56690499	56690526	protein_coding	Tfg	utr3	ENSMUSG00000022757	ProperStrand	19	chr13	97190589	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.4076
chr8	116572328	116572345	LTR	ORR1D1	MaLR	chr8ORR1D1116572287	NonProperStrand	2	chr9	123461954	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr5	139420184	139420269	SINE	B4A	B4	chr5B4A139420193	ProperStrand	2	chr11	109472670	109472743	protein_coding	Wipi1	utr5	ENSMUSG00000041895	ProperStrand	23	1	-20.7239
chr17	39846580	39846682	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	158332769	158332787	protein_coding	Adig	intron	ENSMUSG00000044405	ProperStrand	1	1	-inf
chr12	28438273	28438373	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr13	38709676	38709766	protein_coding	Muted	intron	ENSMUSG00000038982	NonProperStrand	15	1	-17.9502
chr11	106794424	106794449	SINE	B1F	Alu	chr11B1F106794322	NonProperStrand	1	chr11	106795703	106795795	SINE	B1_Mm	Alu	chr11B1_Mm106795692	ProperStrand	1	1	-inf
chr17	21736887	21736977	LINE	L1Md_A	L1	chr17L1Md_A21735108	ProperStrand	2	chr11	97703904	97706829	protein_coding	B230217C12Rik	utr3	ENSMUSG00000089676	ProperStrand	2	1	-19.8939
chr5	150288942	150289032	LTR	MLT1L	MaLR	chr5MLT1L150288917	ProperStrand	1	chr5	150288830	150288930	LTR	MTB	MaLR	chr5MTB150288512	NonProperStrand	1	1	-inf
chr11	109011745	109011769	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	136618937	136619056	protein_coding	Syt2	intron	ENSMUSG00000026452	ProperStrand	51	1	-6.4208
chr12	69158661	69158722	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	chr7	15939227	15939494	protein_coding	Obox2	intron	ENSMUSG00000074369	NonProperStrand	66	1	-13.1005
chrX	103462827	103462883	LINE	L1MD1	L1	chrXL1MD1103462698	NonProperStrand	3	chrX	103464328	103464390	LINE	L1MD1	L1	chrXL1MD1103464327	NonProperStrand	2	1	-20.2824
chr13	62116248	62116352	LTR	MT2B	ERVL	chr13MT2B62116257	ProperStrand	1	chr7	130495286	130495339	protein_coding	Arhgap17	intron	ENSMUSG00000030766	ProperStrand	89	1	-inf
chr3	83375359	83375377	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n83375276	NonProperStrand	7	chr10	85646565	85646654	protein_coding	Syn3	intron	ENSMUSG00000059602	NonProperStrand	48	1	-16.8929
chr3	9548567	9548657	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	chr11	97731002	97731102	protein_coding	Fbxo47	intron	ENSMUSG00000070336	ProperStrand	56	2	-10.7133
chr12	94410229	94410319	LTR	MLT1J2	MaLR	chr12MLT1J294410126	NonProperStrand	1	chr12	94399759	94399859	SINE	B4	B4	chr12B494399661	ProperStrand	1	1	-inf
chr5	62519953	62520053	LINE	Lx3_Mus	L1	chr5Lx3_Mus62518516	NonProperStrand	1	chr5	62520158	62520248	LINE	Lx3_Mus	L1	chr5Lx3_Mus62520109	NonProperStrand	1	1	-inf
chr4	125737348	125737366	protein_coding	Oscp1	intron	ENSMUSG00000042616	ProperStrand	1	chr9	75378780	75378804	protein_coding	Tmod3	intron	ENSMUSG00000058587	NonProperStrand	10	1	-inf
chr5	34307155	34307225	LTR	MYSERV6-int	ERVK	chr5MYSERV6-int34306208	NonProperStrand	1	chr14	21502135	21502214	protein_coding	Sec24c	intron	ENSMUSG00000039367	ProperStrand	81	1	-inf
chr17	70963685	70963762	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr12	99512621	99512638	protein_coding	Gpr65	intron	ENSMUSG00000021886	NonProperStrand	5	1	-11.3439
chr4	150248103	150248539	SINE	B1_Mus1	Alu	chr4B1_Mus1150248378	NonProperStrand	2	chr2	5379297	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr11	20107310	20107394	protein_coding	Rab1	intron	ENSMUSG00000020149	NonProperStrand	7	chr7	99441184	99441200	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-11.8397
chr4	109687092	109687159	LINE	L1_Mus1	L1	chr4L1_Mus1109682503	NonProperStrand	5	chr9	123461957	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr6	32836300	32836334	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	chr2	23192488	23193109	protein_coding	Nxph2	intron	ENSMUSG00000069132	ProperStrand	13	1	-12.6852
chr17	34952012	34952074	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr9	79818774	79818790	protein_coding	Filip1	intron	ENSMUSG00000034898	NonProperStrand	4	1	-16.3433
chr5	143995481	143995516	antisense	4930448H16Rik	.	ENSMUSG00000089879	NonProperStrand	13	chr9	22361436	22361548	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	1	-13.5276
chr14	8166413	8166744	LINE	L1Md_F3	L1	chr14L1Md_F38166371	ProperStrand	2	chr1	4772157	4772247	protein_coding-noncoding	Mrpl15	utr3	ENSMUSG00000033845	ProperStrand	2	2	-inf
chr16	50527455	50527547	lincRNA	G730013B05Rik	intron	ENSMUSG00000085617	ProperStrand	33	chr2	5379271	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.7120
chr7	116170738	116170828	protein_coding-noncoding	Tub	utr5	ENSMUSG00000031028	NonProperStrand	5	chr7	116164464	116170729	protein_coding	Tub	intron	ENSMUSG00000031028	NonProperStrand	50	3	-inf
chr16	93893655	93893739	protein_coding-noncoding	Chaf1b	utr5	ENSMUSG00000022945	ProperStrand	12	chr9	123461833	123461870	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr5	124877306	124877343	LTR	MTD	MaLR	chr5MTD124877132	NonProperStrand	1	mmu-miR-3968	3	21	miRNA	mmu-miR-3968	.	mmu-miR-3968	ProperStrand	12	1	-inf
chr2	131503629	131503685	antisense	Gm14280	.	ENSMUSG00000086831	NonProperStrand	33	chr4	104650534	104650580	protein_coding	1700024P16Rik	intron	ENSMUSG00000078612	ProperStrand	64	1	-13.1014
chr11	79143500	79143590	SINE	B1_Mur4	Alu	chr11B1_Mur479143503	ProperStrand	6	chr2	91202829	91202929	protein_coding	1110051M20Rik	intron	ENSMUSG00000040591	ProperStrand	15	2	-inf
chr3	68584374	68584447	LTR	RLTR41	ERV1	chr3RLTR4168584216	NonProperStrand	1	chr9	110281291	110281317	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr18	57547054	57547120	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	chr7	110591564	110591634	protein_coding	Olfr605	exon	ENSMUSG00000058079	ProperStrand	1	1	-inf
chr4	133387429	133387519	LTR	MT2B2	ERVL	chr4MT2B2133387429	ProperStrand	2	chr4	133387533	133387633	SINE	B1_Mur1	Alu	chr4B1_Mur1133387440	ProperStrand	2	2	-inf
chr2	105877681	105877735	processed_transcript	BC048594	.	ENSMUSG00000086131	NonProperStrand	7	chr11	93949936	93949985	protein_coding	Spag9	intron	ENSMUSG00000020859	NonProperStrand	74	2	-inf
chr1	75255587	75255677	protein_coding	Ptprn	intron	ENSMUSG00000026204	ProperStrand	7	chr8	121535792	121535892	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	1	-13.0634
chr1	134314017	134314072	protein_coding	Dstyk	utr5	ENSMUSG00000042046	NonProperStrand	72	chr3	88622568	88622627	pseudogene	5830417I10Rik	.	ENSMUSG00000078684	ProperStrand	52	1	-11.9440
chr3	77089333	77089423	LINE	L1VL1	L1	chr3L1VL177086811	NonProperStrand	1	chr3	77089680	77089781	SINE	B1_Mm	Alu	chr3B1_Mm77089627	NonProperStrand	1	1	-inf
chr1	152068650	152068740	LTR	MER21B	ERV1	chr1MER21B152068607	ProperStrand	4	chr1	152068483	152068594	SINE	RSINE1	B4	chr1RSINE1152068441	ProperStrand	4	4	-inf
chr4	82486377	82486467	protein_coding-noncoding	Zdhhc21	utr3	ENSMUSG00000028403	ProperStrand	7	chr4	82486254	82486354	protein_coding	Zdhhc21	intron	ENSMUSG00000028403	ProperStrand	77	2	-inf
chr7	101735086	101735108	LINE	L2	L2	chr7L2101734799	ProperStrand	2	chr7	101740708	101740740	Simple_repeat	(TC)n	Simple_repeat	chr7(TC)n101740715	ProperStrand	2	2	-inf
chr14	63146704	63146830	LTR	MTC	MaLR	chr14MTC63146448	NonProperStrand	3	chr17	39847182	39847214	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr9	67946007	67948123	LTR	ORR1B2	MaLR	chr9ORR1B267945899	NonProperStrand	8	chr2	154859228	154859273	protein_coding	a	intron	ENSMUSG00000027596	ProperStrand	61	1	-16.1413
chr16	31990893	31990993	protein_coding	Senp5	intron	ENSMUSG00000022772	NonProperStrand	5	chr5	149048235	149048324	protein_coding	Mtus2	intron	ENSMUSG00000029651	ProperStrand	20	2	-inf
chr2	153515645	153515763	LTR	RLTR33	ERVK	chr2RLTR33153515637	ProperStrand	1	chr2	153501680	153501717	protein_coding	Dnmt3b	intron	ENSMUSG00000027478	NonProperStrand	32	1	-inf
chr4	91364029	91364099	LINE	L1Md_F2	L1	chr4L1Md_F291362453	NonProperStrand	6	chr2	59204807	59204887	LTR	MTC	MaLR	chr2MTC59204476	NonProperStrand	1	1	-inf
chr15	89591042	89591142	LTR	MTA_Mm	MaLR	chr15MTA_Mm89591024	ProperStrand	1	chr15	89590874	89590964	SINE	RSINE1	B4	chr15RSINE189590896	NonProperStrand	1	1	-inf
chr14	78535811	78535894	LTR	RMER16-int	ERVK	chr14RMER16-int78535776	ProperStrand	3	chr14	78535707	78535783	LTR	RMER16	ERVK	chr14RMER1678535252	ProperStrand	1	1	-inf
chr17	39847277	39847323	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	155896381	155896437	SINE	PB1D9	Alu	chr2PB1D9155896381	NonProperStrand	1	1	-inf
chr4	42980576	42980835	LINE	L1_Rod	L1	chr4L1_Rod42980421	NonProperStrand	4	chr4	42980842	42980932	LTR	MTB_Mm	MaLR	chr4MTB_Mm42980621	NonProperStrand	2	1	-20.9262
chr4	139482471	139482571	lincRNA	Gm13028	intron	ENSMUSG00000087628	ProperStrand	21	chr19	5844539	5844629	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	1	-11.4901
chr2	181518660	181518691	protein_coding	Myt1	intron	ENSMUSG00000010505	ProperStrand	44	chr2	14041788	14041893	protein_coding	Stam	intron	ENSMUSG00000026718	NonProperStrand	6	2	-inf
chr17	39846941	39847008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	65028981	65035721	LTR	MTE2a	MaLR	chr8MTE2a65035673	ProperStrand	1	1	-inf
chr7	109617757	109617794	protein_coding	Rrm1	utr3	ENSMUSG00000030978	ProperStrand	3	chr1	153298857	153298877	protein_coding	1190005F20Rik	intron	ENSMUSG00000053286	NonProperStrand	31	1	-20.0043
chr5	5144026	5144126	protein_coding	Cdk14	intron	ENSMUSG00000028926	ProperStrand	13	chr5	3797743	3797833	protein_coding	Ankib1	intron	ENSMUSG00000040351	NonProperStrand	8	1	-19.7796
chr15	76330468	76330484	protein_coding	Hsf1	exon	ENSMUSG00000022556	ProperStrand	4	chr16	17253595	17253709	protein_coding	Hic2	intron	ENSMUSG00000050240	ProperStrand	111	1	-16.4805
chr19	8767598	8767786	LTR	RLTR11A2	ERVK	chr19RLTR11A28767309	ProperStrand	2	chr19	8767810	8768610	SINE	B3	B2	chr19B38767950	NonProperStrand	2	2	-inf
chr8	53976349	53976439	LINE	Lx9	L1	chr8Lx953976319	NonProperStrand	1	chr7	47188460	47188560	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	1	-inf
chr17	39846044	39846174	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr12	58030119	58030140	protein_coding	Slc25a21	intron	ENSMUSG00000035472	ProperStrand	8	1	-5.7717
chr17	39847981	39848066	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	111363208	111363267	SINE	B4	B4	chr12B4111363168	ProperStrand	2	1	-5.4040
chr13	97190580	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr17	37006762	37006831	protein_coding	Trim10	utr5	ENSMUSG00000073400	ProperStrand	39	1	-5.9665
chr15	79967542	79967642	protein_coding	Tab1	intron	ENSMUSG00000022414	NonProperStrand	44	chr17	33715450	33715540	protein_coding	Myo1f	intron	ENSMUSG00000024300	NonProperStrand	6	1	-17.4850
chr10	40258575	40258675	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr5	114627030	114628652	protein_coding	Acacb	intron	ENSMUSG00000042010	NonProperStrand	38	1	-6.2554
chr4	129056586	129056664	SINE	B2_Mm1t	B2	chr4B2_Mm1t129056586	NonProperStrand	1	chr11	94290884	94290955	protein_coding	Cacna1g	intron	ENSMUSG00000020866	ProperStrand	40	1	-inf
chr2	159606782	159606872	LINE	Lx8	L1	chr2Lx8159606676	ProperStrand	1	chr2	159606336	159606436	LTR	ORR1B2-int	MaLR	chr2ORR1B2-int159605968	ProperStrand	1	1	-inf
chr3	41971924	41972024	LINE	L1_Mur2	L1	chr3L1_Mur241971443	NonProperStrand	1	chr3	41972321	41972411	LTR	ORR1B1	MaLR	chr3ORR1B141972228	ProperStrand	1	1	-inf
chr6	47561895	47561935	LINE	L1Md_F2	L1	chr6L1Md_F247561312	ProperStrand	2	chr6	47562048	47562140	LINE	L1Md_F2	L1	chr6L1Md_F247562016	NonProperStrand	1	1	-inf
chr17	39847506	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	133720616	133720674	protein_coding-noncoding	Ccdc21	utr3	ENSMUSG00000037443	ProperStrand	3	1	-4.3512
chr5	33519598	33519662	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr5	33506590	33506644	LINE	Lx8	L1	chr5Lx833506547	NonProperStrand	23	2	-17.4392
chr17	71637776	71637840	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	chr7	25683363	25683400	protein_coding	Cd79a	intron	ENSMUSG00000003379	ProperStrand	1	1	-inf
chr3	86794938	86795003	LINE	Lx2B	L1	chr3Lx2B86794251	NonProperStrand	3	chr17	39847207	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-9.8423
chr5	37392111	37392137	LTR	RLTR18B	ERVK	chr5RLTR18B37392007	ProperStrand	1	chr13	97190553	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39847254	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	134988924	134989027	protein_coding	Stx4a	intron	ENSMUSG00000030805	ProperStrand	5	1	-4.3348
chr5	26918282	26918310	SINE	B4	B4	chr5B426918147	NonProperStrand	1	chr16	91725207	91725255	protein_coding	Cryzl1	intron	ENSMUSG00000058240	ProperStrand	22	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr11	120347096	120347154	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	1	-5.2003
chr11	23424086	23424157	LTR	RMER3D-int	ERVK	chr11RMER3D-int23423689	ProperStrand	1	chr1	165220152	165222575	protein_coding	Prrx1	intron	ENSMUSG00000026586	ProperStrand	33	1	-inf
chr6	3201471	3201565	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	69092225	69092279	Low_complexity	AT_rich	Low_complexity	chr11AT_rich69092225	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	31211674	31211784	protein_coding	Nfrkb	intron	ENSMUSG00000042185	NonProperStrand	30	1	-7.9563
chr17	88440862	88462747	protein_coding	Fbxo11	intron	ENSMUSG00000005371	NonProperStrand	15	chr11	119999357	119999439	protein_coding	Slc38a10	intron	ENSMUSG00000061306	NonProperStrand	60	1	-14.8500
chr4	52105671	52105761	LINE	L1_Mus4	L1	chr4L1_Mus452105524	NonProperStrand	1	chr4	52105806	52105906	LINE	L1_Mus4	L1	chr4L1_Mus452105802	NonProperStrand	1	1	-inf
chr16	52237854	52237954	LINE	L1Md_F2	L1	chr16L1Md_F252237735	NonProperStrand	1	chr16	52237300	52237390	SINE	B3	B2	chr16B352237319	ProperStrand	1	1	-inf
chr3	52353933	52354033	LINE	L1MEc	L1	chr3L1MEc52353738	NonProperStrand	1	chr3	52354318	52354408	SINE	B1_Mur2	Alu	chr3B1_Mur252354337	NonProperStrand	1	1	-inf
chr10	40258547	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	16754830	16754848	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	1	-7.2606
chr7	110071468	110071553	LINE	Lx6	L1	chr7Lx6110071413	ProperStrand	1	chr17	39847739	39847778	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	136214468	136214523	LTR	ORR1A4-int	MaLR	chrXORR1A4-int136214253	NonProperStrand	17	chr13	97190557	97190580	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.6341
chr13	18728517	18728573	LINE	Lx9	L1	chr13Lx918727263	ProperStrand	2	chr17	39846415	39846461	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr4	117493387	117493487	LTR	RMER19C	ERVK	chr4RMER19C117493025	NonProperStrand	1	chr4	117493648	117493738	SINE	B2_Mm2	B2	chr4B2_Mm2117493601	NonProperStrand	2	1	-inf
chr15	12906504	12906594	LTR	ORR1E-int	MaLR	chr15ORR1E-int12906403	ProperStrand	3	chr15	12906634	12906734	LTR	ORR1E-int	MaLR	chr15ORR1E-int12906506	ProperStrand	3	3	-inf
chr10	40258575	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	12367359	12367383	LTR	ORR1A0	MaLR	chr2ORR1A012367360	ProperStrand	1	1	-inf
chr6	118663679	118663769	protein_coding	Cacna1c	intron	ENSMUSG00000051331	ProperStrand	30	chr6	96113092	96113192	protein_coding	Fam19a1	intron	ENSMUSG00000059187	NonProperStrand	18	1	-15.8826
chr15	79918773	79918866	SINE	B1_Mus2	Alu	chr15B1_Mus279918772	ProperStrand	1	chr9	123462081	123462104	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	57537766	57537816	LTR	MT2B	ERVL	chr3MT2B57537572	NonProperStrand	1	chr3	57536957	57537062	LTR	RLTR25B	ERVK	chr3RLTR25B57536249	NonProperStrand	3	1	-inf
chr15	29294669	29294769	LINE	Lx9	L1	chr15Lx929293763	NonProperStrand	1	chr15	29294862	29294952	LTR	RMER19C	ERVK	chr15RMER19C29294811	ProperStrand	1	1	-inf
chr7	36750065	36750169	LTR	ORR1D1	MaLR	chr7ORR1D136749852	NonProperStrand	1	chr7	36750169	36750191	SINE	B2_Mm2	B2	chr7B2_Mm236750106	NonProperStrand	1	1	-inf
chr17	83306018	83306108	LINE	L1Md_F2	L1	chr17L1Md_F283305832	ProperStrand	1	chr17	83305676	83305776	SINE	ID_B1	B4	chr17ID_B183305582	NonProperStrand	1	1	-inf
chr12	111633293	111633358	LINE	L1M4c	L1	chr12L1M4c111632813	NonProperStrand	2	chr2	72486123	72486203	SINE	B4A	B4	chr2B4A72486058	ProperStrand	1	1	-inf
chr1	52431670	52431760	LTR	MTD	MaLR	chr1MTD52431680	ProperStrand	2	chr1	52431536	52431636	LTR	ORR1B2	MaLR	chr1ORR1B252431321	NonProperStrand	2	2	-inf
chr11	109011656	109011718	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	100805654	100805743	protein_coding	Raver2	intron	ENSMUSG00000035275	ProperStrand	19	1	-8.4053
chr6	3201470	3201546	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr12	80174175	80174492	protein_coding	Plekhh1	intron	ENSMUSG00000060716	NonProperStrand	24	1	-4.6059
chr6	3201485	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	24181128	24181228	protein_coding	Prss27	intron	ENSMUSG00000050762	NonProperStrand	15	1	-5.5348
chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr11	74905428	74905508	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-7.5193
chr17	39847477	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	53891799	53891815	protein_coding	Sergef	intron	ENSMUSG00000030839	ProperStrand	4	2	-6.7714
chr6	143454145	143454235	LINE	Lx4A	L1	chr6Lx4A143454090	NonProperStrand	1	chr6	143454337	143454437	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm143454254	NonProperStrand	1	1	-inf
chr5	140371055	140371148	SINE	B2_Mm1a	B2	chr5B2_Mm1a140370999	ProperStrand	1	chrX	163943251	163943304	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	53	1	-inf
chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	67692532	67692620	SINE	B2_Mm2	B2	chr14B2_Mm267692529	NonProperStrand	1	1	-inf
chr14	26426006	26426090	protein_coding	Zmiz1	intron	ENSMUSG00000007817	NonProperStrand	61	chr9	40804022	40804082	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-7.4065
chr18	33894235	33894310	LTR	RLTR13B1	ERVK	chr18RLTR13B133894011	ProperStrand	1	chr9	123461882	123461949	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	58494963	58494989	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	chr4	10991175	10991292	protein_coding	2310030N02Rik	intron	ENSMUSG00000050323	ProperStrand	19	1	-12.4507
chr9	47827023	47827123	SINE	ID_B1	B4	chr9ID_B147826999	NonProperStrand	3	chr9	47826922	47827012	Simple_repeat	(GA)n	Simple_repeat	chr9(GA)n47826933	ProperStrand	2	2	-inf
chr11	119191722	119191812	protein_coding	Card14	intron	ENSMUSG00000013483	NonProperStrand	31	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.8357
chr7	6007797	6007818	protein_coding	Nlrp4c	intron	ENSMUSG00000034690	ProperStrand	1	chr2	89676443	89676583	protein_coding	Olfr1256	intron	ENSMUSG00000075073	NonProperStrand	1	1	-inf
chr2	118641384	118641456	protein_coding	D2Ertd750e	intron	ENSMUSG00000027331	ProperStrand	11	chr18	65611417	65611485	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	1	-12.7419
chr18	47049647	47049675	protein_coding	4833403I15Rik	intron	ENSMUSG00000024481	ProperStrand	77	chr1	182314991	182315008	protein_coding	Itpkb	intron	ENSMUSG00000038855	NonProperStrand	42	1	-12.2410
chr19	55268228	55268318	protein_coding	Tectb	intron	ENSMUSG00000024979	ProperStrand	3	chr1	84520254	84520354	protein_coding	Dner	intron	ENSMUSG00000036766	ProperStrand	50	1	-18.9930
chr8	93790858	93790958	protein_coding	Rpgrip1l	intron	ENSMUSG00000033282	NonProperStrand	14	chr3	138019548	138019638	protein_coding	Adh6b	intron	ENSMUSG00000074206	ProperStrand	1	1	-inf
chr7	25645011	25645101	LTR	ORR1A3	MaLR	chr7ORR1A325645025	ProperStrand	4	chr7	25644893	25644993	SINE	B4A	B4	chr7B4A25644851	NonProperStrand	4	4	-inf
chr15	99308243	99309064	SINE	RSINE1	B4	chr15RSINE199308226	ProperStrand	1	chr2	155726442	155726532	protein_coding	Uqcc	intron	ENSMUSG00000005882	ProperStrand	21	1	-inf
chr1	122357188	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr14	13263582	13263598	protein_coding	Cadps	intron	ENSMUSG00000054423	NonProperStrand	12	1	-12.1890
chr4	95820914	95820930	LTR	IAPEz-int	ERVK	chr4IAPEz-int95820631	ProperStrand	1	chr17	28823998	28824100	protein_coding	Slc26a8	intron	ENSMUSG00000036196	NonProperStrand	90	1	-inf
chr1	9940616	9940706	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	14	chr13	78040928	78041028	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-14.7303
chr5	115490313	115490399	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr1	152567426	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	1	-8.4574
chr3	90359429	90359462	DNA	MER2	MER2_type	chr3MER290359398	ProperStrand	1	chr15	83698411	83698501	protein_coding	Efcab6	intron	ENSMUSG00000022441	ProperStrand	8	1	-inf
chr15	44808895	44808912	LINE	L1Md_T	L1	chr15L1Md_T44808099	NonProperStrand	1	chr13	112578184	112578278	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr13	21170243	21170290	LINE	L1_Rod	L1	chr13L1_Rod21169895	ProperStrand	2	chr17	39843838	39843919	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-10.2298
chr17	39845938	39846076	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	32450583	32450601	protein_coding	St6galnac4	intron	ENSMUSG00000079442	NonProperStrand	3	1	-7.9693
chr3	102340573	102340663	LINE	Lx9	L1	chr3Lx9102339770	NonProperStrand	1	chr3	102292452	102292552	protein_coding	Ngf	intron	ENSMUSG00000027859	ProperStrand	2	1	-inf
chr12	40310623	40310720	LINE	L1Md_F3	L1	chr12L1Md_F340310267	NonProperStrand	1	chr12	40311199	40311258	LINE	L1Md_F3	L1	chr12L1Md_F340311098	NonProperStrand	1	1	-inf
chr1	92123147	92123213	SINE	B4A	B4	chr1B4A92123082	NonProperStrand	4	chr8	95717188	95717264	protein_coding	Ces1d	intron	ENSMUSG00000056973	NonProperStrand	52	1	-18.1476
chr8	33915724	33915795	DNA	Tigger5	MER2_type	chr8Tigger533915635	ProperStrand	1	chr16	10845976	10846057	protein_coding	A630055G03Rik	intron	ENSMUSG00000037991	ProperStrand	46	1	-inf
chr8	107056378	107056446	protein_coding	Nae1	intron	ENSMUSG00000031878	ProperStrand	17	chr8	13348636	13348699	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	1	-11.8714
chr16	17222217	17222249	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	11	chr5	124250984	124251075	protein_coding	Kntc1	intron	ENSMUSG00000029414	NonProperStrand	67	1	-15.2703
chr3	90506257	90509204	LINE	L1_Rod	L1	chr3L1_Rod90507106	ProperStrand	2	chr3	90509206	90509296	LINE	L1_Rod	L1	chr3L1_Rod90508841	ProperStrand	12	1	-inf
chr4	11334251	11334315	LINE	Lx8	L1	chr4Lx811334125	ProperStrand	1	chr4	11334901	11334975	SINE	B1F	Alu	chr4B1F11334913	ProperStrand	1	1	-inf
chr17	6137964	6138067	protein_coding-noncoding	Tulp4	utr5	ENSMUSG00000034377	ProperStrand	12	chr17	6138305	6138347	protein_coding	Tulp4	utr5	ENSMUSG00000034377	ProperStrand	56	1	-15.4511
chr8	71689614	71689704	SINE	B2_Mm2	B2	chr8B2_Mm271689633	NonProperStrand	2	chr8	71689705	71689804	lincRNA	Gm7677	exon	ENSMUSG00000091162	NonProperStrand	2	2	-inf
chr11	49398814	49398914	SINE	B1_Mus2	Alu	chr11B1_Mus249398755	NonProperStrand	1	chr11	49399136	49399226	SINE	B1_Mus2	Alu	chr11B1_Mus249399127	NonProperStrand	1	1	-inf
chr5	92391922	92392022	protein_coding	Rchy1	utr5	ENSMUSG00000029397	ProperStrand	1	chr5	92392045	92392135	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-inf
chr17	12972771	12972822	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	chr10	123051750	123052201	protein_coding	Fam19a2	intron	ENSMUSG00000044071	NonProperStrand	176	1	-10.3129
chr12	39450278	39450378	LINE	Lx5	L1	chr12Lx539449466	NonProperStrand	1	chr12	39450478	39450568	LINE	Lx5	L1	chr12Lx539450465	NonProperStrand	1	1	-inf
chr17	56315501	56315831	protein_coding	D17Wsu104e	utr3	ENSMUSG00000019579	NonProperStrand	80	chr17	56309428	56309498	protein_coding	Tnfaip8l1	intron	ENSMUSG00000044469	ProperStrand	56	1	-11.5831
chr5	90243438	90243479	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	chr14	33989414	33989432	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-10.4947
chr11	90632624	90632710	LINE	L1Md_T	L1	chr11L1Md_T90630710	NonProperStrand	3	chr5	121572164	121572704	Other	RMER1C	Other	chr5RMER1C121572305	NonProperStrand	8	2	-21.0103
chr7	46850980	46851886	LINE	L1_Mus1	L1	chr7L1_Mus146850082	ProperStrand	37	chr5	146260994	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-6.0103
chr10	110774288	110774402	LINE	Lx7	L1	chr10Lx7110774219	NonProperStrand	1	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-inf
chr1	13372087	13372153	SINE	B4A	B4	chr1B4A13372087	ProperStrand	2	chr1	13354271	13354327	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	2	-inf
chr17	39846492	39846560	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	123658605	123658635	SINE	B4A	B4	chr4B4A123658543	NonProperStrand	1	1	-inf
chr7	134944907	134945008	protein_coding-noncoding	Hsd3b7	utr5	ENSMUSG00000042289	ProperStrand	2	chr7	134944865	134944955	protein_coding	Hsd3b7	intron	ENSMUSG00000042289	ProperStrand	21	2	-inf
chr14	10066221	10066265	LINE	Lx8	L1	chr14Lx810065986	ProperStrand	1	chr19	4770017	4770113	SINE	B1_Mur1	Alu	chr19B1_Mur14770033	NonProperStrand	1	1	-inf
chr11	70855947	70856012	LTR	IAPEz-int	ERVK	chr11IAPEz-int70854241	NonProperStrand	1	chr11	97423579	97423654	protein_coding	Srcin1	intron	ENSMUSG00000038453	NonProperStrand	68	1	-inf
chr11	8534338	8534366	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr16	43874478	43874592	protein_coding	Qtrtd1	intron	ENSMUSG00000022704	ProperStrand	26	1	-9.6299
chr3	49102034	49102065	SINE	B1_Mus1	Alu	chr3B1_Mus149102019	ProperStrand	1	chr6	52860542	52860656	protein_coding	Jazf1	intron	ENSMUSG00000063568	ProperStrand	20	1	-inf
chr13	97077074	97077104	LINE	Lx7	L1	chr13Lx797076766	ProperStrand	3	chr13	97073719	97073831	SINE	B3A	B2	chr13B3A97073725	ProperStrand	2	1	-20.2824
chr15	66962420	66962520	LTR	RMER10A	ERVL	chr15RMER10A66962395	NonProperStrand	3	chr15	66962574	66962664	LTR	RMER10A	ERVL	chr15RMER10A66962514	ProperStrand	3	3	-inf
chr1	72835376	72835398	LTR	LTR16E1	ERVL	chr1LTR16E172835367	ProperStrand	2	chr1	13572046	13576432	protein_coding	Tram1	intron	ENSMUSG00000025935	ProperStrand	10	1	-20.4467
chr18	36801888	36801912	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	chr6	49126721	49126812	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	ProperStrand	101	1	-10.9425
chr3	95116048	95116090	antisense	RP24-372P19.1	.	ENSMUSG00000093424	NonProperStrand	11	chr1	132986736	132986801	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	1	-13.4107
chr2	22903756	22903846	LTR	ORR1B1	MaLR	chr2ORR1B122903560	ProperStrand	1	chr2	22903896	22903996	Simple_repeat	(TC)n	Simple_repeat	chr2(TC)n22903863	ProperStrand	1	1	-inf
chr15	38066988	38067078	LTR	RMER4B	ERVK	chr15RMER4B38066982	NonProperStrand	6	chr15	38066892	38066992	SINE	B1_Mur4	Alu	chr15B1_Mur438066818	NonProperStrand	2	2	-inf
chr8	109826648	109826665	protein_coding	Nfat5	intron	ENSMUSG00000003847	NonProperStrand	7	chr11	76728050	76728178	protein_coding	Tmigd1	intron	ENSMUSG00000020839	NonProperStrand	12	1	-20.2970
chr13	112667179	112667269	LINE	L2a	L2	chr13L2a112667167	NonProperStrand	1	chr13	112667277	112667377	LINE	Lx8	L1	chr13Lx8112667303	ProperStrand	1	1	-inf
chr2	71806309	71806371	LINE	L2a	L2	chr2L2a71806260	ProperStrand	1	chr17	31072443	31072485	protein_coding	Glp1r	intron	ENSMUSG00000024027	ProperStrand	28	1	-inf
chr6	57508134	57508234	LINE	L1_Mur3	L1	chr6L1_Mur357507948	NonProperStrand	2	chr1	136774840	136774931	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	2	-inf
chr11	27490852	27490952	LINE	Lx	L1	chr11Lx27490439	NonProperStrand	2	chr13	33220648	33220738	LINE	L1_Mus1	L1	chr13L1_Mus133219188	NonProperStrand	1	1	-inf
chr17	46433060	46433094	SINE	ID_B1	B4	chr17ID_B146433047	NonProperStrand	1	chr7	133004844	133004940	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	1	-inf
chr17	39847978	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	80054712	80054749	SINE	B1F	Alu	chr10B1F80054703	NonProperStrand	3	1	-4.3512
chr11	121278052	121278111	SINE	B2_Mm1t	B2	chr11B2_Mm1t121277979	ProperStrand	2	chr11	121277423	121277472	SINE	B3	B2	chr11B3121277371	NonProperStrand	2	2	-inf
chr1	66992595	66992671	SINE	B1_Mur2	Alu	chr1B1_Mur266992520	NonProperStrand	1	chr5	130245563	130245644	protein_coding	Gbas	intron	ENSMUSG00000029432	ProperStrand	48	1	-inf
chr8	85019556	85019587	LTR	MTE2b	MaLR	chr8MTE2b85019506	ProperStrand	4	chr2	5379302	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.1399
chr7	100369185	100369285	LINE	HAL1	L1	chr7HAL1100369212	ProperStrand	1	chr7	100369584	100369674	LTR	LTR16A	ERVL	chr7LTR16A100369581	ProperStrand	1	1	-inf
chr15	47539993	47540084	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-6.0082
chr7	109520581	109520625	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr13	36166524	36166611	protein_coding	Lyrm4	intron	ENSMUSG00000046573	NonProperStrand	50	1	-10.2081
chr4	11187720	11187780	LTR	ORR1A1	MaLR	chr4ORR1A111187645	NonProperStrand	1	chr19	10899086	10899236	protein_coding	Cd6	intron	ENSMUSG00000024670	NonProperStrand	8	1	-inf
chr17	39847348	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	177764195	177764281	SINE	B1_Mus1	Alu	chr1B1_Mus1177764182	NonProperStrand	1	1	-inf
chr8	120509771	120509833	SINE	B1_Mus2	Alu	chr8B1_Mus2120509783	NonProperStrand	1	chr9	123462033	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	111334689	111334922	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	chr5	111334541	111334715	pseudogene	Gm15989	.	ENSMUSG00000081104	ProperStrand	3	3	-inf
chr17	39847892	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	31530931	31530972	protein_coding	Cct5	intron	ENSMUSG00000022234	ProperStrand	4	1	-3.7035
chr17	39846458	39846499	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	19104290	19104394	LTR	RLTR9C	ERVK	chr9RLTR9C19104020	ProperStrand	1	1	-inf
chr14	111622987	111623087	LTR	RLTR13D3	ERVK	chr14RLTR13D3111621966	NonProperStrand	1	chr14	111623098	111623188	SINE	B3	B2	chr14B3111623105	NonProperStrand	1	1	-inf
chr2	90395132	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr11	55109008	55109063	protein_coding	Fat2	intron	ENSMUSG00000055333	NonProperStrand	19	1	-12.0529
chr1	69668734	69668800	protein_coding	Ikzf2	intron	ENSMUSG00000025997	ProperStrand	19	chr1	167242529	167242608	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	1	-12.1510
chr10	108889261	108889377	LINE	L1ME3A	L1	chr10L1ME3A108889064	NonProperStrand	1	chr15	79720976	79720992	SINE	PB1D10	Alu	chr15PB1D1079720951	NonProperStrand	3	1	-inf
chrX	114116726	114116746	LINE	Lx2A1	L1	chrXLx2A1114116558	ProperStrand	1	chr17	39846747	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	74914358	74914417	LTR	ORR1C2	MaLR	chr14ORR1C274914014	ProperStrand	4	chr7	79418670	79418716	protein_coding	Mctp2	intron	ENSMUSG00000032776	NonProperStrand	86	1	-17.0036
chr8	57958351	57958367	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr13	35865032	35865171	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-8.3075
chr17	39847676	39848052	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	20671817	20672072	LTR	ORR1A1-int	MaLR	chrXORR1A1-int20670687	NonProperStrand	17	3	-3.7393
chr8	79230858	79230958	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	chr8	79242954	79243044	lincRNA	Gm10649	intron	ENSMUSG00000074235	ProperStrand	82	1	-9.9050
chr1	151488782	151488872	LINE	Lx6	L1	chr1Lx6151488696	ProperStrand	1	chr17	39847213	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr9	40803582	40803654	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr3	84985304	84985354	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-5.3880
chr14	79024399	79024488	protein_coding	Dgkh	intron	ENSMUSG00000034731	NonProperStrand	61	chr11	48802036	48802082	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-9.2363
chr15	62110072	62110152	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr16	19883804	19883821	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-3.2500
chr8	120409009	120409109	SINE	RSINE1	B4	chr8RSINE1120408926	NonProperStrand	2	chr8	120408806	120408896	Simple_repeat	(TCTA)n	Simple_repeat	chr8(TCTA)n120408757	ProperStrand	2	2	-inf
chr12	110504774	110504875	LINE	Lx8	L1	chr12Lx8110504264	ProperStrand	18	chr6	30816032	30816056	protein_coding	Copg2	intron	ENSMUSG00000025607	ProperStrand	30	1	-15.8742
chr17	35039125	35042904	protein_coding-noncoding	Ehmt2	utr5	ENSMUSG00000013787	NonProperStrand	2	chr17	35038999	35043139	protein_coding	Ehmt2	intron	ENSMUSG00000013787	NonProperStrand	7	2	-inf
chr12	118635743	118635833	LTR	RLTR12B	ERVK	chr12RLTR12B118635683	NonProperStrand	1	chr12	118635965	118636065	SINE	B1_Mus1	Alu	chr12B1_Mus1118635918	ProperStrand	1	1	-inf
chr9	41979344	41979394	LINE	L1MD	L1	chr9L1MD41979234	ProperStrand	4	chr17	39847847	39847907	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr17	39847758	39847779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	141152136	141152275	protein_coding-noncoding	Fblim1	utr3	ENSMUSG00000006219	NonProperStrand	1	1	-inf
chr6	24844928	24845018	LTR	MERVL_2A-int	ERVL	chr6MERVL_2A-int24844779	ProperStrand	1	chr6	24844677	24844777	snoRNA	ENSMUSG00000077196_SNORA17	.	ENSMUSG00000077196	ProperStrand	1	1	-inf
chr4	46452600	46452681	LINE	L1ME1	L1	chr4L1ME146452183	NonProperStrand	2	chr9	123461957	123461996	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr1	34188314	34188350	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr8	95788746	95788825	protein_coding	Ces1f	intron	ENSMUSG00000031725	ProperStrand	45	1	-7.3598
chr18	9732682	9732782	protein_coding	Colec12	intron	ENSMUSG00000036103	ProperStrand	25	chr2	76173048	76173138	protein_coding	Pde11a	intron	ENSMUSG00000075270	NonProperStrand	79	1	-13.2434
chr9	19043009	19043099	LINE	MusHAL1	L1	chr9MusHAL119042773	ProperStrand	2	chr9	19042639	19042739	LTR	RMER17B	ERVK	chr9RMER17B19041891	ProperStrand	1	1	-inf
chr7	118115128	118115239	protein_coding	Mrvi1	intron	ENSMUSG00000005611	ProperStrand	87	chr16	55816029	55816073	protein_coding	Nfkbiz	intron	ENSMUSG00000035356	ProperStrand	4	1	-16.9636
chr17	39847428	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	4932436	4932453	protein_coding	Peli3	exon	ENSMUSG00000024901	NonProperStrand	3	1	-4.3512
chr2	39666726	39666816	LINE	L1_Mur3	L1	chr2L1_Mur339666450	ProperStrand	1	chr2	39666916	39667016	LINE	L1_Mur3	L1	chr2L1_Mur339666832	ProperStrand	1	1	-inf
chr14	27100260	27100350	DNA	URR1B	MER1_type	chr14URR1B27100156	ProperStrand	2	chr14	27100387	27100487	LTR	RMER20A	ERVK	chr14RMER20A27100409	ProperStrand	2	2	-inf
chr5	138131894	138131916	lincRNA	Gm15498	exon	ENSMUSG00000079163	NonProperStrand	3	chr2	5145320	5145426	protein_coding	Ccdc3	intron	ENSMUSG00000026676	ProperStrand	8	1	-20.8155
chr8	3415034	3415131	protein_coding	Arhgef18	intron	ENSMUSG00000004568	ProperStrand	170	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-9.1422
chrX	52551848	52551925	LINE	L1_Mus3	L1	chrXL1_Mus352551697	NonProperStrand	1	chr9	118674951	118674999	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr1	150991277	150991314	LINE	Lx7	L1	chr1Lx7150991078	NonProperStrand	1	chr9	123461905	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	4082162	4082264	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr12	116563404	116563495	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n116563424	NonProperStrand	3	2	-inf
chr1	20805146	20805220	protein_coding	Mcm3	intron	ENSMUSG00000041859	ProperStrand	38	chr5	21518864	21518882	protein_coding	Reln	intron	ENSMUSG00000042453	NonProperStrand	79	1	-12.3924
chr15	41460904	41460931	protein_coding	Oxr1	intron	ENSMUSG00000022307	ProperStrand	55	chr13	104061829	104069208	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	1	-10.4824
chr17	39846602	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	150387765	150387834	SINE	B2_Mm2	B2	chr2B2_Mm2150387632	NonProperStrand	1	1	-inf
chr2	128834161	128837350	protein_coding	Zc3h6	intron	ENSMUSG00000042851	ProperStrand	27	chr9	56236961	56236991	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-10.1088
chr12	94409368	94409386	LINE	L1_Mus2	L1	chr12L1_Mus294408819	NonProperStrand	4	chr4	155157996	155158091	protein_coding	Tmem88b	utr3	ENSMUSG00000073680	ProperStrand	45	1	-18.4004
chr17	39846415	39846469	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	6611946	6612010	SINE	B3	B2	chr7B36611927	NonProperStrand	1	1	-inf
chr15	101266750	101266811	protein_coding	Krt83	intron	ENSMUSG00000047641	NonProperStrand	30	chr4	136550927	136551014	protein_coding	Zbtb40	intron	ENSMUSG00000060862	ProperStrand	82	1	-12.7962
chr9	65896290	65896390	SINE	B1_Mur4	Alu	chr9B1_Mur465896289	ProperStrand	2	chr9	65896195	65896285	SINE	PB1D10	Alu	chr9PB1D1065896197	ProperStrand	2	2	-inf
chr8	95455874	95455953	LINE	L1MD1	L1	chr8L1MD195455895	NonProperStrand	2	chr17	39846718	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr14	76130916	76132988	protein_coding	Cog3	intron	ENSMUSG00000034893	NonProperStrand	29	chr7	116298429	116298538	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	1	-11.4258
chr5	146261021	146261090	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	131158894	131158939	protein_coding	Rnf24	intron	ENSMUSG00000048911	ProperStrand	37	1	-6.0103
chr2	127049556	127052263	protein_coding	Snrnp200	intron	ENSMUSG00000003660	ProperStrand	16	chr2	127019355	127028266	protein_coding	1810024B03Rik	intron	ENSMUSG00000044145	NonProperStrand	6	2	-inf
chr16	23111615	23111650	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	123	chr17	25980527	25980598	protein_coding	Rhot2	intron	ENSMUSG00000025733	ProperStrand	13	1	-13.7023
chr13	54190029	54190173	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	chr9	123461801	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	4	-6.3320
chrX	135803300	135803339	lincRNA	C330013F16Rik	intron	ENSMUSG00000086807	NonProperStrand	32	chr17	70963690	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-7.4594
chr5	120120151	120122894	antisense	Gm2301	.	ENSMUSG00000087516	NonProperStrand	3	chr5	120122893	120126235	protein_coding	Tbx3	intron	ENSMUSG00000018604	ProperStrand	33	2	-22.0052
chr5	146260994	146261230	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	90395132	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	3	-7.4653
chr17	38005425	38005515	Satellite	MMSAT4	Satellite	chr17MMSAT438005412	NonProperStrand	2	chr17	38005583	38005683	Satellite	MMSAT4	Satellite	chr17MMSAT438005555	NonProperStrand	2	2	-inf
chr17	24720778	24720827	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr11	97680632	97680691	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	2	-12.0425
chr4	129847216	129847293	protein_coding	Tinagl1	intron	ENSMUSG00000028776	NonProperStrand	24	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.2879
chr6	30889257	30889343	lincRNA	4930412F09Rik	intron	ENSMUSG00000085321	NonProperStrand	17	chr12	88417042	88417096	protein_coding	Tmem63c	intron	ENSMUSG00000034145	ProperStrand	23	1	-16.5187
chr14	50927939	50928036	LINE	L1Md_F2	L1	chr14L1Md_F250927873	NonProperStrand	8	chr10	42761786	42761813	protein_coding	Sobp	intron	ENSMUSG00000038248	NonProperStrand	27	1	-17.7574
chr9	97083578	97083609	LTR	RLTR31A_Mm	ERVK	chr9RLTR31A_Mm97083074	NonProperStrand	2	chr2	32788398	32788473	protein_coding	Lrsam1	intron	ENSMUSG00000026792	ProperStrand	24	1	-20.2563
chr13	119706466	119706572	LINE	L1Md_F2	L1	chr13L1Md_F2119706478	NonProperStrand	24	chr13	119705499	119706472	LINE	Lx4B	L1	chr13Lx4B119705749	NonProperStrand	6	6	-inf
chr5	110275901	110275991	LTR	RMER17D2	ERVK	chr5RMER17D2110275912	ProperStrand	2	chr5	110275761	110275861	Unknown	MurSatRep1	Unknown	chr5MurSatRep1110274430	ProperStrand	2	2	-inf
chr6	70102140	70102230	LINE	L1_Mus3	L1	chr6L1_Mus370100864	NonProperStrand	1	chr6	70102295	70102395	LINE	L1_Mus3	L1	chr6L1_Mus370102302	NonProperStrand	1	1	-inf
chr17	39847277	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	45042636	45042745	protein_coding	BC049352	intron	ENSMUSG00000091996	ProperStrand	4	1	-4.8204
chr13	46862961	46863032	protein_coding	Kif13a	intron	ENSMUSG00000021375	ProperStrand	101	chr18	25224709	25224740	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	1	-8.0054
chr11	120073201	120073797	LTR	MTC-int	MaLR	chr11MTC-int120073586	ProperStrand	5	chr11	120075594	120075684	SINE	B2_Mm2	B2	chr11B2_Mm2120075598	ProperStrand	4	4	-inf
chr4	57064189	57064230	protein_coding	Epb4.1l4b	intron	ENSMUSG00000028434	ProperStrand	65	chr7	13311314	13311343	protein_coding	Vmn2r56	intron	ENSMUSG00000090762	NonProperStrand	118	1	-10.5030
chr17	39846661	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	70029726	70029826	LTR	RMER3D-int	ERVK	chr8RMER3D-int70029286	ProperStrand	5	1	-3.1907
chr13	112578181	112578271	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr4	154646184	154646284	protein_coding	Prkcz	intron	ENSMUSG00000029053	ProperStrand	24	1	-5.9916
chr16	19160751	19160841	LINE	L1_Mur3	L1	chr16L1_Mur319160654	ProperStrand	6	chr16	19160863	19160963	LTR	RLTRETN_Mm	ERVK	chr16RLTRETN_Mm19160868	NonProperStrand	6	6	-inf
chrX	71619202	71619292	SINE	B1_Mus1	Alu	chrXB1_Mus171619201	NonProperStrand	1	chrX	71619444	71619544	SINE	B1_Mus2	Alu	chrXB1_Mus271619421	NonProperStrand	1	1	-inf
chr17	39846360	39847646	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	34549626	34549647	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	31	-7.2877
chr1	63595480	63595549	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chr1	153322330	153322388	protein_coding	Rnf2	intron	ENSMUSG00000026484	ProperStrand	71	4	-inf
chr1	105684536	105684636	LTR	RLTR22_Mur	ERVK	chr1RLTR22_Mur105684559	NonProperStrand	1	chr1	105684414	105684504	SINE	B1_Mus1	Alu	chr1B1_Mus1105684411	ProperStrand	1	1	-inf
chr11	110272225	110272325	protein_coding	Map2k6	intron	ENSMUSG00000020623	NonProperStrand	3	chr8	17362799	17362889	protein_coding	Csmd1	intron	ENSMUSG00000060924	ProperStrand	35	1	-19.1629
chr17	39843805	39843824	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	151686000	151686138	protein_coding	Rnf207	intron	ENSMUSG00000058498	ProperStrand	4	1	-8.4460
chr6	108943569	108943669	LINE	L1MB2	L1	chr6L1MB2108943591	ProperStrand	1	chr6	108943187	108943277	LTR	RLTR18	ERVK	chr6RLTR18108943045	ProperStrand	1	1	-inf
chr1	63249911	63249973	lincRNA	Gm11607	intron	ENSMUSG00000086730	ProperStrand	24	chr1	63215580	63215652	protein_coding	Ndufs1	intron	ENSMUSG00000025968	NonProperStrand	47	1	-14.3744
chr7	68096228	68096328	LINE	L1Md_A	L1	chr7L1Md_A68096251	ProperStrand	1	chr7	68096110	68096200	LINE	L1Md_F3	L1	chr7L1Md_F368096049	ProperStrand	3	1	-inf
chr5	115865237	115865286	antisense	Gm13832	.	ENSMUSG00000087292	ProperStrand	43	chr4	110324465	110324513	protein_coding	Agbl4	intron	ENSMUSG00000061298	NonProperStrand	47	1	-13.1888
chr5	52829211	52829311	LTR	MT2A	ERVL	chr5MT2A52829151	ProperStrand	1	chr5	52829018	52829108	SINE	B1_Mus1	Alu	chr5B1_Mus152829006	NonProperStrand	1	1	-inf
chr17	29589909	29589995	SINE	B1_Mus2	Alu	chr17B1_Mus229589913	NonProperStrand	3	chr9	110281285	110281338	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-13.9200
chr7	113542331	113542390	LINE	L1Md_F2	L1	chr7L1Md_F2113541770	NonProperStrand	1	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr8	33907081	33907218	SINE	B2_Mm1a	B2	chr8B2_Mm1a33907046	ProperStrand	14	chr8	33906930	33907048	SINE	B4A	B4	chr8B4A33906871	NonProperStrand	8	8	-inf
chr17	39843706	39843749	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr5	8401735	8401768	protein_coding-noncoding	Dbf4	utr3	ENSMUSG00000002297	ProperStrand	6	1	-7.5378
chr1	185413476	185413545	LTR	RLTR9A	ERVK	chr1RLTR9A185413350	ProperStrand	9	chr12	78350925	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-9.7480
chr5	76962477	76964483	protein_coding	Exoc1	intron	ENSMUSG00000036435	ProperStrand	20	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.6542
chr11	109011799	109011855	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr19	32100981	32101047	protein_coding	Asah2	intron	ENSMUSG00000024887	ProperStrand	10	1	-9.7335
chrX	134062660	134066268	LINE	Lx3_Mus	L1	chrXLx3_Mus134062085	NonProperStrand	1	chr17	39847913	39847979	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	134760827	134760927	SINE	B1_Mm	Alu	chr7B1_Mm134760816	NonProperStrand	2	chr7	134753378	134756910	protein_coding	Zfp629	utr3	ENSMUSG00000045639	NonProperStrand	4	2	-inf
chr11	76590200	76590296	LINE	L1_Mus3	L1	chr11L1_Mus376589996	ProperStrand	2	chr7	98696752	98696790	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-14.8839
chrX	49660909	49660978	antisense	Gm14582	.	ENSMUSG00000086704	ProperStrand	1	chr2	181188073	181188241	protein_coding	Zbtb46	intron	ENSMUSG00000027583	NonProperStrand	19	1	-inf
chr8	116989888	116989978	protein_coding	Wwox	intron	ENSMUSG00000004637	NonProperStrand	44	chr13	112578205	112578305	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-4.8004
chr17	39846748	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	108665019	108665072	SINE	B1F	Alu	chr6B1F108664974	ProperStrand	1	1	-inf
chr1	34180771	34180826	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr6	84936600	84936701	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-4.6321
chr17	39847102	39847169	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	48833868	48833960	protein_coding	9930111J21Rik2	intron	ENSMUSG00000069892	ProperStrand	9	1	-3.1539
chr10	61689114	61689214	protein_coding	Tspan15	intron	ENSMUSG00000037031	NonProperStrand	51	chr7	80529642	80529732	protein_coding	Rgma	intron	ENSMUSG00000070509	NonProperStrand	10	1	-16.0372
chr4	116803796	116803874	protein_coding	Plk3	intron	ENSMUSG00000028680	NonProperStrand	10	chr10	18122466	18123028	protein_coding	Nhsl1	intron	ENSMUSG00000039835	ProperStrand	11	1	-19.4391
chr13	37863238	37863338	LINE	L1MC5	L1	chr13L1MC537863257	NonProperStrand	3	chr13	37863110	37863200	SINE	B1_Mur2	Alu	chr13B1_Mur237863094	ProperStrand	3	3	-inf
chr17	39846831	39846941	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	40453794	40453839	protein_coding	Crisp1	intron	ENSMUSG00000025431	ProperStrand	3	1	-4.3017
chr5	146261022	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	141035055	141035126	protein_coding	Spen	exon	ENSMUSG00000040761	ProperStrand	77	1	-4.5821
chr13	106898287	106898326	LINE	Lx6	L1	chr13Lx6106898216	NonProperStrand	1	chr17	39847659	39847721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	18285987	18286116	protein_coding	Dgcr8	intron	ENSMUSG00000022718	ProperStrand	60	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-7.8486
chr11	69676945	69677013	SINE	B1_Mm	Alu	chr11B1_Mm69676898	ProperStrand	1	chr1	182013843	182013932	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-inf
chr4	155199337	155199372	DNA	URR1B	MER1_type	chr4URR1B155199276	NonProperStrand	2	chr4	155203449	155203515	Simple_repeat	(TTTC)n	Simple_repeat	chr4(TTTC)n155203460	NonProperStrand	3	2	-inf
chr7	34218944	34219078	LTR	ORR1B1	MaLR	chr7ORR1B134218777	ProperStrand	1	chr8	47711090	47711109	protein_coding	Casp3	intron	ENSMUSG00000031628	ProperStrand	5	1	-inf
chr11	97654879	97654915	SINE	B1_Mur2	Alu	chr11B1_Mur297654850	ProperStrand	1	chr11	97657679	97657709	SINE	PB1D10	Alu	chr11PB1D1097657656	ProperStrand	1	1	-inf
chr17	39846419	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	84829832	84829882	protein_coding	Prg3	intron	ENSMUSG00000027072	ProperStrand	1	1	-inf
chr3	107808425	107808525	LINE	Lx7	L1	chr3Lx7107808391	ProperStrand	1	chr3	107808217	107808307	Other	RMER1B	Other	chr3RMER1B107807723	ProperStrand	1	1	-inf
chr17	39847536	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	191821635	191821687	LTR	MLT1J2-int	MaLR	chr1MLT1J2-int191821514	ProperStrand	1	1	-inf
chr15	83237506	83237650	protein_coding	Pacsin2	intron	ENSMUSG00000016664	ProperStrand	107	chr1	189126293	189126311	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-11.8363
chr17	89602065	89602165	LINE	Lx2B	L1	chr17Lx2B89602021	ProperStrand	1	chr17	89601763	89601853	LTR	RMER13B	ERVK	chr17RMER13B89601011	NonProperStrand	1	1	-inf
chr17	39847167	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	70654369	70654459	SINE	B4A	B4	chr11B4A70654393	NonProperStrand	5	2	-7.5968
chr16	37515917	37522776	protein_coding	Gtf2e1	exon	ENSMUSG00000022828	ProperStrand	19	chr2	5379275	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.8156
chr17	39847658	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	22040989	22041330	protein_coding	Zfp184	intron	ENSMUSG00000006720	NonProperStrand	16	4	-5.7550
chr3	110939071	110939160	LTR	IAPLTR2_Mm	ERVK	chr3IAPLTR2_Mm110938761	ProperStrand	1	chr3	110938505	110938605	LTR	RMER19C	ERVK	chr3RMER19C110938338	ProperStrand	1	1	-inf
chr19	61307180	61307266	LINE	Lx4A	L1	chr19Lx4A61306392	NonProperStrand	1	chr1	179517531	179517587	LTR	MTA_Mm-int	MaLR	chr1MTA_Mm-int179517055	NonProperStrand	14	1	-inf
chr10	128084069	128084371	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	114	chr14	33347936	33348006	protein_coding	Ercc6	intron	ENSMUSG00000054051	ProperStrand	29	1	-12.2028
chr7	101372959	101373059	LINE	L1_Mm	L1	chr7L1_Mm101372347	NonProperStrand	1	chr7	101367036	101372983	LTR	RMER6C	ERVK	chr7RMER6C101366978	NonProperStrand	1	1	-inf
chr19	21694738	21694794	protein_coding	1110059E24Rik	intron	ENSMUSG00000035171	NonProperStrand	12	chr4	84574055	84574117	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	1	-14.8390
chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	131340247	131340326	protein_coding	Smox	intron	ENSMUSG00000027333	NonProperStrand	7	1	-5.1121
chr17	39847345	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	122312272	122312392	SINE	B1_Mur2	Alu	chr6B1_Mur2122312289	NonProperStrand	1	1	-inf
chr1	7089346	7089398	protein_coding	Pcmtd1	intron	ENSMUSG00000051285	ProperStrand	119	chr12	80794475	80794532	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-8.4700
chr18	60723069	60723114	protein_coding	Rbm22	intron	ENSMUSG00000024604	NonProperStrand	15	chr2	181111114	181111226	protein_coding	Zgpat	intron	ENSMUSG00000027582	NonProperStrand	2	1	-22.6089
chr1	55000125	55000305	LTR	MTD	MaLR	chr1MTD55000089	NonProperStrand	11	chr1	55000366	55000712	SINE	B4A	B4	chr1B4A55000525	ProperStrand	1	1	-inf
chr7	80066813	80066943	LINE	L1_Mus2	L1	chr7L1_Mus280066164	ProperStrand	10	chr5	73423160	73423183	protein_coding	Fryl	intron	ENSMUSG00000070733	ProperStrand	9	1	-20.1232
chr17	39847479	39847510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	35124720	35124741	LTR	RMER4A	ERVK	chr17RMER4A35124692	NonProperStrand	1	1	-inf
chr3	122949507	122949566	SINE	B4A	B4	chr3B4A122949333	NonProperStrand	1	chr3	122933982	122934056	protein_coding	Synpo2	intron	ENSMUSG00000050315	ProperStrand	9	1	-inf
chr17	39847552	39847689	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	56059299	56062134	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int56061425	ProperStrand	2	2	-inf
chr17	39846411	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	49643174	49643233	LTR	MT2B2	ERVL	chr4MT2B249642754	ProperStrand	1	1	-inf
chr5	108332903	108336141	protein_coding-noncoding	Rpl5	utr5	ENSMUSG00000058558	ProperStrand	7	chr5	108332806	108332896	protein_coding	Rpl5	exon	ENSMUSG00000058558	ProperStrand	8	7	-inf
chr18	34777164	34777260	protein_coding	Brd8	intron	ENSMUSG00000003778	NonProperStrand	20	chr5	24415940	24415963	protein_coding	Prkag2	intron	ENSMUSG00000028944	ProperStrand	69	1	-13.9718
chr6	124715231	124715267	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	chr6	83341270	83341363	protein_coding	Tet3	intron	ENSMUSG00000034832	NonProperStrand	13	1	-13.4113
chr6	55079303	55079361	protein_coding	Crhr2	intron	ENSMUSG00000003476	NonProperStrand	33	chr6	35075223	35075320	protein_coding	Cnot4	intron	ENSMUSG00000038784	ProperStrand	34	1	-14.3832
chr2	59755282	59755319	protein_coding-noncoding	Baz2b	utr3	ENSMUSG00000026987	NonProperStrand	12	chr9	123462081	123462128	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr13	98843670	98843797	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr19	6227594	6227610	protein_coding	Gpha2	utr3	ENSMUSG00000024784	NonProperStrand	1	1	-inf
chr9	120120421	120120740	LTR	MTD	MaLR	chr9MTD120120391	NonProperStrand	2	chr9	120110532	120116538	SINE	B3A	B2	chr9B3A120110519	NonProperStrand	1	1	-inf
chr19	26898395	26898495	LTR	MTEb	MaLR	chr19MTEb26898409	NonProperStrand	1	chr19	26898309	26898399	processed_transcript	4931403E22Rik	.	ENSMUSG00000093772	NonProperStrand	1	1	-inf
chr9	118674951	118674985	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr13	20473612	20473679	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	2	-6.0452
chr16	19652098	19652198	LTR	IAPEY3-int	ERVK	chr16IAPEY3-int19651157	ProperStrand	1	chr16	19652381	19652471	LTR	IAPEY_LTR	ERVK	chr16IAPEY_LTR19652172	ProperStrand	1	1	-inf
chr5	138291382	138295835	LTR	MTA_Mm	MaLR	chr5MTA_Mm138291259	ProperStrand	6	chr5	138291480	138296748	protein_coding	Pilrb1	intron	ENSMUSG00000066684	NonProperStrand	29	4	-21.0618
chr9	123462048	123462145	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr16	34357389	34360824	protein_coding	Kalrn	exon	ENSMUSG00000061751	NonProperStrand	17	1	-3.3592
chr19	10540778	10540837	SINE	PB1D10	Alu	chr19PB1D1010540762	NonProperStrand	3	chr19	10547320	10547339	Simple_repeat	(TG)n	Simple_repeat	chr19(TG)n10547275	ProperStrand	1	1	-inf
chr13	6910049	6910149	LINE	L1_Mus1	L1	chr13L1_Mus16908785	ProperStrand	1	chr13	67706773	67706863	protein_coding	AA987161	intron	ENSMUSG00000058093	ProperStrand	5	1	-inf
chrX	147585671	147585771	LTR	MER90a	ERV1	chrXMER90a147585671	ProperStrand	1	chrX	147585433	147585523	SINE	B1_Mm	Alu	chrXB1_Mm147585444	NonProperStrand	1	1	-inf
chr17	39847183	39847201	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	119199905	119199947	protein_coding-noncoding	Card14	utr5	ENSMUSG00000013483	NonProperStrand	1	1	-inf
chr17	39847273	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	163727566	163727598	protein_coding	Rims4	intron	ENSMUSG00000035226	ProperStrand	4	1	-4.8204
chr6	3201470	3201524	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	115054246	115054351	SINE	B1F	Alu	chr8B1F115054224	ProperStrand	1	1	-inf
chr4	121203665	121203739	LINE	L1Md_F3	L1	chr4L1Md_F3121199420	ProperStrand	8	chr17	28480094	28480124	protein_coding	Tead3	intron	ENSMUSG00000002249	ProperStrand	27	1	-17.7574
chr9	72227782	72227872	lincRNA	BC065403	intron	ENSMUSG00000091084	ProperStrand	3	chr9	75690014	75690114	protein_coding	Bmp5	intron	ENSMUSG00000032179	ProperStrand	7	1	-25.2264
chr6	92436433	92436523	protein_coding	Prickle2	intron	ENSMUSG00000030020	NonProperStrand	15	chr14	118095747	118095847	protein_coding	Gpc6	intron	ENSMUSG00000058571	NonProperStrand	31	1	-16.1907
chr17	39843267	39847137	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	17776747	17776796	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	58	-inf
chr11	30592879	30592969	LINE	L1_Mus1	L1	chr11L1_Mus130591729	ProperStrand	1	chr11	30593017	30593117	LINE	L1_Mus2	L1	chr11L1_Mus230593000	NonProperStrand	1	1	-inf
chr4	49445081	49445100	LTR	RNERVK23-int	ERVK	chr4RNERVK23-int49444957	NonProperStrand	1	chr1	168355939	168356066	SINE	B3	B2	chr1B3168355959	ProperStrand	2	1	-inf
chr12	80249965	80250005	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr6	33388097	33388147	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	4	-14.7978
chr12	6248904	6249004	LTR	ORR1A2-int	MaLR	chr12ORR1A2-int6248318	NonProperStrand	1	chr12	6249062	6249152	LTR	ORR1A2	MaLR	chr12ORR1A26249025	NonProperStrand	1	1	-inf
chr15	97682951	97683007	Other	RMER1B	Other	chr15RMER1B97682190	ProperStrand	3	chr16	18897700	18897787	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	1	-17.1336
chr2	44861495	44861585	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	25	chr10	90313005	90313105	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-12.2115
chr11	94330179	94330197	protein_coding	Cacna1g	intron	ENSMUSG00000020866	NonProperStrand	11	chr8	72322914	72322997	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	1	-15.6064
chr3	26321224	26321241	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr19	44252088	44252166	protein_coding	Pkd2l1	intron	ENSMUSG00000037578	NonProperStrand	6	1	-19.3532
chr6	29575630	29575720	LINE	L1M4	L1	chr6L1M429575623	ProperStrand	1	chr17	39846431	39846531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	23510190	23510227	LINE	L1_Mus1	L1	chr2L1_Mus123509827	NonProperStrand	1	chr2	5379233	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr1	123899578	123899668	LTR	MTE2a	MaLR	chr1MTE2a123899326	NonProperStrand	1	chr1	123899764	123899864	SINE	ID_B1	B4	chr1ID_B1123899705	NonProperStrand	1	1	-inf
chr6	91837026	91837115	protein_coding-noncoding	C130022K22Rik	utr5	ENSMUSG00000034083	NonProperStrand	5	chr4	153865946	153865965	protein_coding	Prdm16	intron	ENSMUSG00000039410	ProperStrand	43	1	-18.0374
chr4	83342713	83342773	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	chr4	83347068	83347167	pseudogene	Cbx3-ps3	.	ENSMUSG00000080793	ProperStrand	1	1	-inf
chr12	73087993	73088010	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	15	chr9	103950802	103950820	protein_coding	Acad11	intron	ENSMUSG00000090150	ProperStrand	10	1	-18.4947
chr9	91510857	91510957	DNA	Charlie12	MER1_type	chr9Charlie1291510860	NonProperStrand	1	chr9	91510713	91510803	LINE	Lx8	L1	chr9Lx891510638	NonProperStrand	1	1	-inf
chr17	39846352	39847154	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	17987797	17987839	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	16	-8.5672
chr15	89532406	89533408	LINE	L1Md_F	L1	chr15L1Md_F89531585	NonProperStrand	3	chr15	89543122	89543223	LTR	MMERVK10C-int	ERVK	chr15MMERVK10C-int89543075	NonProperStrand	2	2	-inf
chr17	39848128	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	124834518	124834619	protein_coding	Sbno1	intron	ENSMUSG00000038095	ProperStrand	15	1	-3.9151
chr15	80821219	80821263	protein_coding	Sgsm3	intron	ENSMUSG00000042303	ProperStrand	42	chr6	47778255	47778291	protein_coding	Zfp786	intron	ENSMUSG00000051499	ProperStrand	6	1	-17.7014
chr12	108818008	108818059	SINE	B4	B4	chr12B4108817999	ProperStrand	1	chr12	108818436	108818525	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n108818287	ProperStrand	1	1	-inf
chr3	41592564	41592654	LINE	L1Md_F2	L1	chr3L1Md_F241592465	ProperStrand	16	chr3	41593499	41593599	LINE	L1Md_F2	L1	chr3L1Md_F241593460	ProperStrand	28	2	-inf
chr9	32072225	32072326	protein_coding	Arhgap32	utr3	ENSMUSG00000041444	ProperStrand	30	chr2	122123773	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.0249
chr6	134113724	134113787	protein_coding	Etv6	intron	ENSMUSG00000030199	ProperStrand	187	chr4	83340829	83340913	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-7.4943
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	24491111	24491198	protein_coding	Dpy19l2	intron	ENSMUSG00000085576	ProperStrand	89	1	-6.0297
chr19	24133609	24133711	LTR	MLT1J	MaLR	chr19MLT1J24133492	ProperStrand	1	chr2	144139503	144139551	protein_coding	Ovol2	intron	ENSMUSG00000037279	ProperStrand	1	1	-inf
chr13	44869952	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr15	80723176	80723242	protein_coding	Tnrc6b	intron	ENSMUSG00000047888	ProperStrand	52	1	-4.7674
chr16	20089156	20089256	LTR	RMER13B	ERVK	chr16RMER13B20089109	ProperStrand	1	chr16	20088980	20089070	LTR	RMER17B	ERVK	chr16RMER17B20088725	ProperStrand	1	1	-inf
chr5	73246980	73247123	protein_coding	Tec	intron	ENSMUSG00000029217	ProperStrand	63	chr17	88042765	88042783	protein_coding	Epcam	intron	ENSMUSG00000045394	NonProperStrand	8	2	-20.6756
chr3	84170948	84171047	LINE	L1MEg	L1	chr3L1MEg84170924	NonProperStrand	1	chr3	84169155	84169198	LTR	IAPEz-int	ERVK	chr3IAPEz-int84163437	ProperStrand	3	1	-inf
chrX	76034732	76034832	LINE	L1M3	L1	chrXL1M376034755	NonProperStrand	1	chrX	76034419	76034509	LTR	RLTR26	ERVK	chrXRLTR2676034069	NonProperStrand	1	1	-inf
chrX	94083607	94083664	LINE	L1_Mus1	L1	chrXL1_Mus194083318	ProperStrand	1	chr14	8140680	8140696	protein_coding	Gm3739	intron	ENSMUSG00000091472	ProperStrand	4	1	-inf
chr17	39847477	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	113415306	113415323	protein_coding	Kif26a	exon	ENSMUSG00000021294	NonProperStrand	2	1	-5.4040
chr1	119022816	119022906	LINE	L1_Mus4	L1	chr1L1_Mus4119022569	ProperStrand	1	chr1	119023021	119023121	SINE	MIRc	MIR	chr1MIRc119023045	ProperStrand	1	1	-inf
chr17	39846410	39846429	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	88357282	88357298	protein_coding	Slc5a8	intron	ENSMUSG00000020062	NonProperStrand	3	1	-4.3017
chr5	146834476	146835004	Simple_repeat	(CCA)n	Simple_repeat	chr5(CCA)n146834469	ProperStrand	1	chr9	108508155	108508396	protein_coding	Arih2	intron	ENSMUSG00000064145	NonProperStrand	62	1	-inf
chr15	25364657	25364747	LINE	L1MA6	L1	chr15L1MA625364578	NonProperStrand	5	chr15	25364410	25364510	SINE	RSINE1	B4	chr15RSINE125364411	NonProperStrand	6	5	-inf
chr17	39843394	39843494	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	134698674	134698764	protein_coding	Runx3	intron	ENSMUSG00000070691	NonProperStrand	20	2	-7.6906
chr17	39847248	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	105809267	105809357	protein_coding	Dnajc24	intron	ENSMUSG00000027166	ProperStrand	3	1	-5.4882
chr17	35162284	35162876	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	151	chr17	35162909	35162999	protein_coding	Ng23	utr3	ENSMUSG00000036185	ProperStrand	4	1	-15.8744
chr11	72746867	72746947	LINE	L1Md_F2	L1	chr11L1Md_F272746193	ProperStrand	1	chr11	72740443	72740513	protein_coding	Zzef1	utr3	ENSMUSG00000055670	ProperStrand	78	1	-inf
chr18	44424324	44424359	LTR	IAPEz-int	ERVK	chr18IAPEz-int44418347	NonProperStrand	16	chr18	10814733	10814844	protein_coding	Mib1	utr3	ENSMUSG00000024294	ProperStrand	51	1	-15.0495
chr17	39847888	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	35695573	35695600	SINE	RSINE1	B4	chr17RSINE135695493	NonProperStrand	1	1	-inf
chr13	21161441	21161495	LINE	L1_Rod	L1	chr13L1_Rod21161141	NonProperStrand	2	chr17	39847889	39847957	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr4	152242585	152242675	LTR	RLTR11A	ERVK	chr4RLTR11A152242407	ProperStrand	1	chr4	152242716	152242816	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n152242744	ProperStrand	1	1	-inf
chr15	76661974	76662163	LINE	Lx8	L1	chr15Lx876661942	ProperStrand	1	chr15	76661804	76661967	LTR	ORR1C2	MaLR	chr15ORR1C276661785	NonProperStrand	1	1	-inf
chr5	146261299	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr8	11511920	11512029	protein_coding	Carkd	intron	ENSMUSG00000031505	NonProperStrand	5	1	-13.0367
chr9	59671594	59671628	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr6	114428336	114428360	protein_coding	Hrh1	intron	ENSMUSG00000053004	ProperStrand	41	1	-7.0447
chr5	114851995	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr9	40804028	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-4.7801
chr11	50382586	50382625	LINE	L1MA5	L1	chr11L1MA550382333	NonProperStrand	5	chr10	75859421	75859512	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	78	1	-16.6739
chr1	72602572	72603019	Other	RMER1A	Other	chr1RMER1A72602664	NonProperStrand	1	chr1	72603061	72603161	Other	RMER1A	Other	chr1RMER1A72602809	NonProperStrand	1	1	-inf
chr7	12930793	12930847	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr4	148508698	148508717	protein_coding	Apitd1	intron	ENSMUSG00000073705	NonProperStrand	15	1	-14.2667
chr10	25494439	25494542	LINE	L1_Mm	L1	chr10L1_Mm25493380	NonProperStrand	4	chr10	25495280	25495305	LTR	MLT1J1	MaLR	chr10MLT1J125495256	NonProperStrand	1	1	-inf
chr7	138891904	138891953	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr14	122372489	122372548	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-7.5135
chr17	10252948	10252964	LINE	Lx7	L1	chr17Lx710252484	ProperStrand	1	chr17	39847740	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39848008	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	3246479	3246568	protein_coding	1700012B15Rik	intron	ENSMUSG00000079179	NonProperStrand	4	1	-3.7035
chr13	97128101	97128203	LINE	L1Md_A	L1	chr13L1Md_A97127548	NonProperStrand	10	chr9	123461930	123461975	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-7.4520
chr14	21797773	21797803	protein_coding	Vcl	intron	ENSMUSG00000021823	NonProperStrand	8	chr9	123462079	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr9	123462128	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	134529800	134529874	protein_coding	Nfasc	intron	ENSMUSG00000026442	ProperStrand	7	1	-5.1121
chr4	121259033	121259123	LINE	L1_Mus2	L1	chr4L1_Mus2121258742	ProperStrand	1	chr2	110895582	110895682	lincRNA	Gm13942	intron	ENSMUSG00000079171	ProperStrand	2	1	-inf
chr4	127191004	127191080	Simple_repeat	(TCCA)n	Simple_repeat	chr4(TCCA)n127190912	ProperStrand	3	chr9	122991221	122991908	protein_coding	Zdhhc3	intron	ENSMUSG00000025786	NonProperStrand	28	1	-19.7481
chr11	97781668	97781743	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr13	24990840	24990905	protein_coding	D130043K22Rik	intron	ENSMUSG00000006711	NonProperStrand	14	1	-16.7402
chr17	39848200	39848304	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	8162907	8162926	protein_coding	Ssxb3	intron	ENSMUSG00000079701	NonProperStrand	1	1	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	92941778	92941849	LTR	RLTR10C	ERVK	chr5RLTR10C92941638	ProperStrand	8	1	-12.0079
chr9	85956703	85956793	LTR	IAPEz-int	ERVK	chr9IAPEz-int85956701	ProperStrand	1	chr9	85956514	85956614	LTR	IAPLTR1a_Mm	ERVK	chr9IAPLTR1a_Mm85956363	ProperStrand	1	1	-inf
chr1	63177796	63179458	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr9	123461875	123462171	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	3	-3.1613
chr7	16327107	16327197	LINE	Lx2B	L1	chr7Lx2B16326118	NonProperStrand	7	chr7	16327460	16327560	LINE	Lx3C	L1	chr7Lx3C16327191	ProperStrand	20	5	-inf
chr6	51466174	51466344	LTR	RLTR33	ERVK	chr6RLTR3351465765	NonProperStrand	8	chr6	51464507	51465238	SINE	B1_Mur4	Alu	chr6B1_Mur451465128	NonProperStrand	6	1	-inf
chr3	63311622	63311722	DNA	MER45R	Tip100	chr3MER45R63311563	ProperStrand	1	chr3	63314259	63314349	LINE	L1Md_T	L1	chr3L1Md_T63314091	ProperStrand	1	1	-inf
chr14	83586639	83586729	LINE	L1_Mus2	L1	chr14L1_Mus283586574	NonProperStrand	1	chr14	83587002	83587102	LINE	L1_Mus2	L1	chr14L1_Mus283586891	ProperStrand	1	1	-inf
chr17	39847678	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	131045890	131045910	lincRNA	Gm831	intron	ENSMUSG00000078531	ProperStrand	1	1	-inf
chr11	21092039	21092129	LTR	RLTR45	ERVK	chr11RLTR4521091745	NonProperStrand	1	chr11	21092178	21092278	LTR	RLTR47_MM	ERV1	chr11RLTR47_MM21092174	NonProperStrand	1	1	-inf
chr5	72618173	72618189	lincRNA	Atp10d	intron	ENSMUSG00000046808	NonProperStrand	11	chr13	44869579	44869669	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.8781
chr2	57242547	57242647	LTR	ORR1A4	MaLR	chr2ORR1A457242519	ProperStrand	1	chr2	57242367	57242457	LTR	ORR1C1	MaLR	chr2ORR1C157242358	ProperStrand	1	1	-inf
chr17	8194881	8194913	LINE	Lx9	L1	chr17Lx98194828	NonProperStrand	1	chr17	39847762	39847848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	6770167	6770257	DNA	RMER30	MER1_type	chr17RMER306770108	ProperStrand	3	chr17	6769986	6770086	SINE	B3	B2	chr17B36769961	ProperStrand	3	2	-20.2273
chr6	3201470	3201531	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	21733534	21733602	protein_coding	Ccdc159	exon	ENSMUSG00000006241	ProperStrand	32	1	-4.0529
chr8	105916061	105916096	Simple_repeat	(ATG)n	Simple_repeat	chr8(ATG)n105916031	NonProperStrand	1	chr7	16548947	16549041	protein_coding	Ehd2	intron	ENSMUSG00000074364	ProperStrand	15	1	-inf
chr18	37851403	37851434	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	chr7	121923241	121923306	protein_coding	Insc	intron	ENSMUSG00000048782	NonProperStrand	66	2	-16.6240
chr13	48730633	48730733	LINE	Lx8	L1	chr13Lx848730489	NonProperStrand	1	chr13	48730392	48730482	SINE	B2_Mm2	B2	chr13B2_Mm248730301	NonProperStrand	1	1	-inf
chr2	137717012	137717029	LINE	L1Md_T	L1	chr2L1Md_T137714579	ProperStrand	2	chr8	120656648	120656688	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n120656605	NonProperStrand	1	1	-inf
chr7	28820727	28821419	LINE	Lx3C	L1	chr7Lx3C28821078	ProperStrand	11	chr7	28820609	28820727	LTR	RMER19C	ERVK	chr7RMER19C28820055	ProperStrand	29	3	-20.0436
chr10	86844543	86844643	LTR	MLT1E1A	MaLR	chr10MLT1E1A86844568	ProperStrand	1	chr10	86844433	86844523	SINE	B1F	Alu	chr10B1F86844434	NonProperStrand	1	1	-inf
chr12	105307790	105307866	DNA	MER20	MER1_type	chr12MER20105307810	ProperStrand	1	chr12	105308250	105308333	LTR	ORR1A4	MaLR	chr12ORR1A4105308181	ProperStrand	1	1	-inf
chr3	88299358	88300958	protein_coding	Lmna	intron	ENSMUSG00000028063	NonProperStrand	24	chr14	52160443	52160466	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-12.5031
chr17	54986823	54986844	LINE	L1_Mur1	L1	chr17L1_Mur154986797	NonProperStrand	2	chr11	8462310	8462357	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	1	-15.4096
chr7	35009869	35009906	lincRNA	Gm17327	exon	ENSMUSG00000090311	ProperStrand	7	chr7	35007815	35007913	protein_coding	Gpi1	intron	ENSMUSG00000036427	NonProperStrand	43	1	-17.1602
chr1	65613590	65613680	LINE	Lx9	L1	chr1Lx965613590	NonProperStrand	1	chr1	65613690	65613790	LTR	RLTR21	ERVK	chr1RLTR2165613672	ProperStrand	1	1	-inf
chr3	3322203	3322303	LINE	L1_Mur3	L1	chr3L1_Mur33322043	ProperStrand	1	chr3	3321967	3322057	SINE	B2_Mm2	B2	chr3B2_Mm23321863	ProperStrand	1	1	-inf
chr17	39846818	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	25779537	25779563	protein_coding	Id2	intron	ENSMUSG00000020644	NonProperStrand	1	1	-inf
chr14	59507512	59507612	LTR	MTD	MaLR	chr14MTD59507306	NonProperStrand	1	chr14	59507956	59508046	LTR	MTE2a	MaLR	chr14MTE2a59507883	ProperStrand	1	1	-inf
chrX	103546013	103546076	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	NonProperStrand	3	chr13	32222512	32222562	protein_coding	Gmds	intron	ENSMUSG00000038372	ProperStrand	50	1	-18.9930
chr7	140757119	140757219	LINE	Lx5	L1	chr7Lx5140756921	ProperStrand	1	chr7	140756829	140756919	SINE	B4	B4	chr7B4140756831	ProperStrand	1	1	-inf
chr7	47186431	47186521	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	chr12	67667895	67667995	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-14.2672
chr17	39842997	39843048	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr9	78209080	78209121	SINE	RSINE1	B4	chr9RSINE178209006	NonProperStrand	2	1	-12.8014
chr10	23785372	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr6	125114388	125114443	protein_coding	Gapdh	intron	ENSMUSG00000057666	NonProperStrand	6	1	-14.8294
chr10	61424423	61424481	protein_coding	Col13a1	intron	ENSMUSG00000058806	NonProperStrand	58	chr2	155819987	155820046	protein_coding	6430550D23Rik	intron	ENSMUSG00000074646	ProperStrand	18	1	-14.5374
chr2	181520543	181520619	protein_coding	Myt1	intron	ENSMUSG00000010505	ProperStrand	44	chr13	112578219	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-4.8004
chr14	36643835	36643935	LINE	L1M4c	L1	chr14L1M4c36643584	ProperStrand	1	chr14	36644051	36644141	LINE	L1MA4	L1	chr14L1MA436643963	NonProperStrand	1	1	-inf
chr14	19795387	19795425	LTR	RLTR20A	ERVK	chr14RLTR20A19795332	NonProperStrand	1	chr17	39846462	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	116107258	116107274	LTR	ORR1A0	MaLR	chr10ORR1A0116107006	NonProperStrand	2	chr9	123461802	123461925	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr14	20487172	20487451	LINE	Lx	L1	chr14Lx20486332	NonProperStrand	1	chr3	142260188	142260317	protein_coding	Gbp1	intron	ENSMUSG00000028269	NonProperStrand	9	1	-inf
chr12	13721355	13721455	LTR	ORR1D1	MaLR	chr12ORR1D113721308	NonProperStrand	1	chr12	13721451	13721541	LTR	ORR1D1	MaLR	chr12ORR1D113721440	ProperStrand	1	1	-inf
chr17	39847889	39847982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	141766695	141766716	SINE	ID_B1	B4	chr7ID_B1141766577	NonProperStrand	1	1	-inf
chr3	47257892	47257910	LINE	Lx4B	L1	chr3Lx4B47257785	NonProperStrand	1	chr2	5379237	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr14	79184913	79184960	LTR	IAPEz-int	ERVK	chr14IAPEz-int79184782	NonProperStrand	2	chr19	8803411	8803485	SINE	B3	B2	chr19B38803414	ProperStrand	1	1	-inf
chr15	51973115	51973151	LINE	L1_Mus4	L1	chr15L1_Mus451972465	NonProperStrand	3	chr15	51976167	51978069	LINE	L1_Mus4	L1	chr15L1_Mus451973988	NonProperStrand	2	1	-20.2824
chr12	69373113	69373181	LINE	Lx5	L1	chr12Lx569373104	ProperStrand	2	chr17	39848182	39848209	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr17	39847654	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	86596452	86596525	LTR	MTB	MaLR	chr4MTB86596434	NonProperStrand	1	1	-inf
chr15	62157785	62157880	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr12	84411104	84411121	protein_coding	Dpf3	intron	ENSMUSG00000021221	ProperStrand	24	1	-8.0523
chr13	13175899	13175999	LINE	Lx8	L1	chr13Lx813175852	NonProperStrand	2	chr13	13175615	13175705	LTR	MTB	MaLR	chr13MTB13175439	NonProperStrand	1	1	-inf
chr11	53694227	53694327	protein_coding	Slc22a5	intron	ENSMUSG00000018900	ProperStrand	15	chr11	54193195	54193285	protein_coding	4930404A10Rik	intron	ENSMUSG00000020332	NonProperStrand	2	1	-22.6089
chr4	137720743	137720860	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr5	107904631	107904648	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-6.3871
chr16	11143905	11143995	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	chr9	59678208	59678810	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-3.4661
chr17	56356593	56356683	protein_coding	Dpp9	intron	ENSMUSG00000001229	NonProperStrand	214	chr14	64747453	64747554	protein_coding	Msra	intron	ENSMUSG00000054733	NonProperStrand	156	1	-7.5651
chr3	18975441	18975531	LINE	L1_Mus1	L1	chr3L1_Mus118970508	ProperStrand	1	chr3	18975577	18975677	SINE	B3	B2	chr3B318975606	NonProperStrand	1	1	-inf
chr3	39026401	39026491	SINE	B4	B4	chr3B439026367	NonProperStrand	1	chr14	98495368	98495468	protein_coding	Dach1	intron	ENSMUSG00000055639	ProperStrand	11	1	-inf
chr13	9834343	9834407	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr10	61431861	61431927	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-5.3801
chr14	86766295	86766369	LTR	MT2A	ERVL	chr14MT2A86766180	NonProperStrand	1	chr13	97190563	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	24528500	24528551	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	24	chr4	129010685	129010711	protein_coding	Rbbp4	intron	ENSMUSG00000057236	NonProperStrand	17	1	-16.4349
chr17	39846378	39846452	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	24937252	24937269	protein_coding	Entpd8	intron	ENSMUSG00000036813	NonProperStrand	1	1	-inf
chr17	39848572	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	65595486	65595561	protein_coding	Wdr19	intron	ENSMUSG00000037890	ProperStrand	17	1	-3.9354
chr4	45346616	45346636	protein_coding	Exosc3	intron	ENSMUSG00000028322	ProperStrand	19	chr2	5379231	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-11.0473
chr7	65312614	65312704	LINE	L1Md_A	L1	chr7L1Md_A65312566	NonProperStrand	10	chr10	42235465	42235565	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	1	-13.5300
chr17	39847562	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	155250857	155250908	protein_coding	Cpsf3l	intron	ENSMUSG00000029034	ProperStrand	5	1	-3.2379
chr3	65383113	65387775	LTR	ORR1A2	MaLR	chr3ORR1A265387459	ProperStrand	2	chr7	103554386	103554406	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-19.2365
chr5	29777487	29777562	protein_coding	Nom1	intron	ENSMUSG00000001569	ProperStrand	79	chr2	5379279	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0260
chr7	16365499	16365531	LINE	L1Md_F	L1	chr7L1Md_F16364749	NonProperStrand	1	chr15	47539999	47540118	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-inf
chr18	41497691	41497781	LTR	RLTR10	ERVK	chr18RLTR1041497620	NonProperStrand	1	chr18	41498128	41498228	SINE	RSINE1	B4	chr18RSINE141498094	NonProperStrand	1	1	-inf
chr7	127981277	127981496	SINE	B3A	B2	chr7B3A127981351	NonProperStrand	7	chr7	127980127	127980217	SINE	ID_B1	B4	chr7ID_B1127980129	ProperStrand	9	3	-inf
chr15	9175899	9177706	LTR	RLTR9A	ERVK	chr15RLTR9A9177603	NonProperStrand	1	chr17	39846759	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846462	39846882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	76906159	76906259	SINE	B1_Mur1	Alu	chr15B1_Mur176906120	ProperStrand	10	3	-5.6971
chr11	30819953	30819973	LINE	L1_Mus4	L1	chr11L1_Mus430819793	ProperStrand	5	chr9	123461977	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr12	51754396	51754929	LTR	MTC	MaLR	chr12MTC51754061	NonProperStrand	1	chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-inf
chr12	59040423	59040493	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr13	70613240	70613297	LTR	MTB_Mm	MaLR	chr13MTB_Mm70613040	ProperStrand	2	1	-17.5474
chrX	14447954	14448044	LINE	L1_Mm	L1	chrXL1_Mm14447676	ProperStrand	1	chrX	14447557	14447657	LINE	L1_Mus1	L1	chrXL1_Mus114442770	ProperStrand	1	1	-inf
chr2	5379258	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr15	59363269	59363336	protein_coding	Nsmce2	intron	ENSMUSG00000059586	NonProperStrand	38	1	-5.4343
chr2	121763602	121763702	LINE	Lx5	L1	chr2Lx5121763620	NonProperStrand	1	chr1	181948412	181948502	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-inf
chr9	107608969	107608986	protein_coding	Sema3f	intron	ENSMUSG00000034684	NonProperStrand	15	chr4	3613543	3613662	protein_coding	Lyn	intron	ENSMUSG00000042228	ProperStrand	23	1	-16.7832
chr16	57425459	57425549	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr4	151777404	151777504	protein_coding	Kcnab2	intron	ENSMUSG00000028931	ProperStrand	216	1	-5.9764
chrX	99825128	99825148	protein_coding	Phka1	intron	ENSMUSG00000034055	ProperStrand	9	chr6	72683412	72683529	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	1	-12.8304
chr10	41859479	41859548	SINE	B1_Mus1	Alu	chr10B1_Mus141859396	ProperStrand	1	chr10	41858950	41859029	SINE	MIRb	MIR	chr10MIRb41858855	ProperStrand	1	1	-inf
chr5	132513297	132513362	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr19	47858076	47859454	protein_coding	Wdr96	intron	ENSMUSG00000044948	NonProperStrand	8	1	-11.3317
chr4	12451572	12451672	SINE	B4A	B4	chr4B4A12451481	NonProperStrand	1	chr4	12451389	12451479	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n12451411	ProperStrand	1	1	-inf
chr11	60294802	60294842	protein_coding	Myo15	intron	ENSMUSG00000042678	NonProperStrand	36	chr13	97190561	97190596	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.1250
chr4	32533197	32533297	protein_coding	Bach2	intron	ENSMUSG00000040270	NonProperStrand	12	chr4	32530340	32530430	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	1	-13.9350
chr13	30624451	30624551	LINE	Lx5	L1	chr13Lx530623712	NonProperStrand	2	chr13	30624655	30624745	LINE	Lx5	L1	chr13Lx530624565	NonProperStrand	1	1	-inf
chr10	7493540	7493605	protein_coding	BC013529	intron	ENSMUSG00000040006	ProperStrand	1	chr13	97190578	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr9	101107794	101107925	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	NonProperStrand	66	1	-7.6583
chr19	8709024	8709090	LTR	MMERVK10C-int	ERVK	chr19MMERVK10C-int8709035	ProperStrand	11	chr11	118000244	118001645	protein_coding	Cyth1	intron	ENSMUSG00000017132	NonProperStrand	253	1	-12.6026
chr12	9843427	9843527	LINE	Lx7	L1	chr12Lx79843300	NonProperStrand	1	chr12	75214098	75214188	protein_coding	Syt16	intron	ENSMUSG00000044912	NonProperStrand	7	1	-inf
chr17	39846726	39846758	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	136097123	136097373	protein_coding	Adora1	utr3	ENSMUSG00000042429	ProperStrand	2	1	-5.3533
chr15	25993139	25993225	LINE	Lx8	L1	chr15Lx825992621	ProperStrand	1	chr11	120395367	120395390	protein_coding	Gcgr	intron	ENSMUSG00000025127	NonProperStrand	4	1	-inf
chr18	77540011	77547742	protein_coding	Loxhd1	intron	ENSMUSG00000032818	NonProperStrand	260	chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-4.2758
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr5	146261040	146261235	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	2	-5.1722
chr13	62438402	62438480	LTR	MMETn-int	ERVK	chr13MMETn-int62437959	ProperStrand	4	chr10	75283914	75283948	protein_coding	Gstt4	intron	ENSMUSG00000009093	NonProperStrand	9	1	-inf
chr4	31102871	31102961	LINE	L1_Mm	L1	chr4L1_Mm31102875	ProperStrand	1	chr4	31102557	31102657	LTR	MTEb	MaLR	chr4MTEb31102479	NonProperStrand	1	1	-inf
chr17	39847440	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	58393771	58402442	protein_coding	Kif27	intron	ENSMUSG00000060176	ProperStrand	75	9	-3.5769
chrX	127319620	127319720	LINE	L1Md_F2	L1	chrXL1Md_F2127319514	ProperStrand	1	chrX	127624595	127624685	LTR	MERVL_2A-int	ERVL	chrXMERVL_2A-int127624231	ProperStrand	1	1	-inf
chr1	33480040	33480120	LINE	L1_Mus4	L1	chr1L1_Mus433479857	NonProperStrand	1	chr1	77380966	77382877	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	1	-inf
chr10	118146666	118146725	LTR	MTB	MaLR	chr10MTB118146455	NonProperStrand	1	chr17	39847244	39847292	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr18	24493663	24493763	LTR	MER90	ERV1	chr18MER9024493547	ProperStrand	2	chr13	49587659	49587749	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	2	-inf
chr18	14626472	14626572	LINE	L1_Mus4	L1	chr18L1_Mus414626106	ProperStrand	1	chr18	14626661	14626751	LINE	L1_Mus4	L1	chr18L1_Mus414626612	NonProperStrand	1	1	-inf
chr17	22460031	22460089	LINE	L1_Mus1	L1	chr17L1_Mus122458665	ProperStrand	13	chr16	31101139	31101167	protein_coding	Acap2	intron	ENSMUSG00000049076	ProperStrand	103	1	-14.0553
chr1	13166554	13166628	protein_coding	Ncoa2	intron	ENSMUSG00000005886	ProperStrand	185	chr12	79356787	79356863	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-4.7141
chr17	39848702	39848818	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr14	51090639	51090677	Low_complexity	GA-rich	Low_complexity	chr14GA-rich51090588	ProperStrand	2	1	-8.7208
chr12	24927831	24927859	LTR	RMER17D	ERVK	chr12RMER17D24927694	ProperStrand	1	chr17	39846461	39846499	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	124160514	124160604	DNA	MER20	MER1_type	chr1MER20124160512	NonProperStrand	1	chr1	124160636	124160736	SINE	ID_B1	B4	chr1ID_B1124160647	NonProperStrand	1	1	-inf
chr17	39847095	39847152	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr9	59393308	59393375	protein_coding	Hexa	intron	ENSMUSG00000025232	ProperStrand	2	1	-20.4235
chr6	33720889	33720968	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr17	47683445	47683525	protein_coding	Ccnd3	intron	ENSMUSG00000034165	NonProperStrand	31	1	-8.1345
chr13	55729795	55729895	protein_coding-noncoding	Caml	utr5	ENSMUSG00000021501	ProperStrand	1	chr13	55729499	55729589	protein_coding	Caml	intron	ENSMUSG00000021501	ProperStrand	1	1	-inf
chr1	151363370	151363482	LTR	IAPEz-int	ERVK	chr1IAPEz-int151361779	NonProperStrand	9	chr2	29252574	29252591	protein_coding	Med27	intron	ENSMUSG00000026799	NonProperStrand	1	1	-inf
chr17	11901494	11901581	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr4	126870283	126877637	protein_coding	Dlgap3	intron	ENSMUSG00000042388	ProperStrand	4	1	-15.4292
chr17	39847214	39847281	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	104065008	104065065	LTR	MERVL-int	ERVL	chr5MERVL-int104060230	NonProperStrand	3	1	-5.4882
chr4	121148587	121148667	LINE	L1_Mm	L1	chr4L1_Mm121148241	ProperStrand	5	chr19	5844466	5844536	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	1	-14.5353
chr1	89679495	89679532	protein_coding	Atg16l1	intron	ENSMUSG00000026289	ProperStrand	119	chr2	154889325	154889440	protein_coding	Ahcy	intron	ENSMUSG00000027597	ProperStrand	11	1	-14.1183
chr17	39847218	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	86791156	86791248	protein_coding	Cd1d2	intron	ENSMUSG00000041750	NonProperStrand	9	1	-3.1539
chr1	75174549	75174771	protein_coding-noncoding	Abcb6	utr3	ENSMUSG00000026198	ProperStrand	2	chr17	70963741	70963796	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-13.6441
chr6	55063188	55065456	protein_coding	Crhr2	intron	ENSMUSG00000003476	NonProperStrand	33	chr9	40804005	40804082	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-8.6386
chr5	33532909	33532938	LINE	L1Md_F2	L1	chr5L1Md_F233530886	NonProperStrand	99	chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	10	1	-14.6825
chr17	30765442	30765554	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-6.9553
chr7	65866049	65866081	LINE	L1_Mur3	L1	chr7L1_Mur365864688	NonProperStrand	2	chr7	65868281	65868398	LINE	Lx3A	L1	chr7Lx3A65867235	ProperStrand	2	2	-inf
chr3	138810903	138810947	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n138810773	ProperStrand	1	chr3	88945278	88945331	protein_coding	Pklr	exon	ENSMUSG00000041237	NonProperStrand	27	1	-inf
chr17	39847919	39847939	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	69413770	69413861	Low_complexity	CT-rich	Low_complexity	chr18CT-rich69413775	ProperStrand	2	2	-inf
chr16	4339655	4339759	protein_coding	Adcy9	intron	ENSMUSG00000005580	ProperStrand	55	chrX	164382754	164382784	protein_coding	Frmpd4	intron	ENSMUSG00000049176	NonProperStrand	76	1	-11.7224
chr4	75358406	75358506	LINE	L1Md_F2	L1	chr4L1Md_F275352650	ProperStrand	1	chr4	75358836	75358926	LINE	L1_Mur3	L1	chr4L1_Mur375358658	NonProperStrand	1	1	-inf
chr7	130744612	130751275	LINE	L1Md_A	L1	chr7L1Md_A130747231	ProperStrand	2	chr7	130751273	130751873	LINE	L1Md_A	L1	chr7L1Md_A130749226	ProperStrand	6	2	-inf
chr16	35981624	35981644	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr17	45567985	45568113	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-6.6812
chr8	95346886	95346905	LTR	RMER2	ERV1	chr8RMER295346688	ProperStrand	1	chr4	126557198	126557308	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	28	1	-inf
chr17	39847980	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	4418264	4418327	SINE	B4	B4	chr10B44418126	NonProperStrand	1	1	-inf
chr2	22744848	22744882	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	70547621	70547746	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-6.0297
chr17	39847348	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	99126020	99126116	protein_coding	Prpf40b	intron	ENSMUSG00000023007	NonProperStrand	2	1	-5.4040
chr9	123461954	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	48025316	48034674	protein_coding	Zfp746	intron	ENSMUSG00000057691	ProperStrand	8	2	-8.1879
chrX	42224989	42225041	LINE	L1Md_F	L1	chrXL1Md_F42224835	ProperStrand	1	chr2	168199740	168199825	LTR	RLTR1B	ERV1	chr2RLTR1B168199305	NonProperStrand	3	1	-inf
chr5	123590817	123603613	lincRNA	AI480526	exon	ENSMUSG00000090086	ProperStrand	1	chr5	123579251	123579336	protein_coding	Rhof	intron	ENSMUSG00000029449	ProperStrand	10	1	-inf
chr15	100241746	100241846	protein_coding	Slc11a2	intron	ENSMUSG00000023030	NonProperStrand	35	chr19	46331381	46331550	protein_coding	Gbf1	intron	ENSMUSG00000025224	NonProperStrand	28	1	-14.6584
chr17	17380817	17380894	LINE	Lx5	L1	chr17Lx517380425	NonProperStrand	1	chr17	17378544	17380817	LTR	RLTR44C	ERVK	chr17RLTR44C17378256	NonProperStrand	1	1	-inf
chr11	7072454	7072567	protein_coding	Adcy1	utr3	ENSMUSG00000020431	ProperStrand	22	chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	1	-15.3357
chr13	40940957	40941025	LTR	MYSERV-int	ERVK	chr13MYSERV-int40940966	ProperStrand	1	chr14	47306744	47306801	LTR	ORR1E	MaLR	chr14ORR1E47306628	ProperStrand	1	1	-inf
chr12	71020583	71020657	protein_coding	Atl1	intron	ENSMUSG00000021066	ProperStrand	35	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.5390
chr2	24806267	24806320	protein_coding	Zmynd19	intron	ENSMUSG00000026974	NonProperStrand	4	chr1	38041697	38041742	protein_coding	Txndc9	utr3	ENSMUSG00000058407	ProperStrand	11	1	-inf
chr11	116757704	116757744	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr5	31836742	31836825	protein_coding-noncoding	Slc4a1ap	utr5	ENSMUSG00000029141	ProperStrand	1	1	-inf
chr7	143566219	143566327	LINE	L1MC2	L1	chr7L1MC2143566033	NonProperStrand	1	chr12	17737640	17737690	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-inf
chr3	144826061	144827306	LINE	L1MEg1	L1	chr3L1MEg1144827162	ProperStrand	2	chr8	125536935	125537073	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-15.5103
chr15	59075517	59075607	Low_complexity	CT-rich	Low_complexity	chr15CT-rich59075523	NonProperStrand	1	chr15	59075331	59075431	Simple_repeat	(TTTTC)n	Simple_repeat	chr15(TTTTC)n59075356	NonProperStrand	1	1	-inf
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr14	45283528	45283629	protein_coding	Gm8257	intron	ENSMUSG00000079265	ProperStrand	33	1	-15.4780
chr11	95002109	95004589	protein_coding	Dlx4	intron	ENSMUSG00000020871	NonProperStrand	2	chr9	123462127	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chrX	130349507	130349597	DNA	MER113A	MER1_type	chrXMER113A130349455	NonProperStrand	1	chrX	130349605	130349705	SINE	MIR	MIR	chrXMIR130349618	NonProperStrand	1	1	-inf
chr4	46492900	46492918	Simple_repeat	(TAAA)n	Simple_repeat	chr4(TAAA)n46492891	ProperStrand	1	chr7	116205252	116205300	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-inf
chr4	131891145	131891176	protein_coding	Rcc1	intron	ENSMUSG00000028896	NonProperStrand	30	chr4	131874233	131874320	protein_coding	Trnau1ap	intron	ENSMUSG00000028898	NonProperStrand	42	1	-14.1479
chr2	102829376	102829438	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr3	116633983	116634068	protein_coding	Palmd	intron	ENSMUSG00000033377	ProperStrand	33	1	-11.0818
chr4	141289457	141289557	SINE	B1F	Alu	chr4B1F141289475	ProperStrand	1	chr4	141289253	141289343	SINE	B1_Mur4	Alu	chr4B1_Mur4141289263	ProperStrand	1	1	-inf
chr8	84825421	84825437	LTR	RMER5	ERV1	chr8RMER584825400	NonProperStrand	1	chr14	30875160	30875258	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	1	-inf
chr7	100733135	100733163	Other	RMER1C	Other	chr7RMER1C100732543	ProperStrand	3	chr17	39843594	39843632	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-8.6612
chr7	143537065	143537102	LTR	LTR48	ERV1	chr7LTR48143536965	ProperStrand	1	chr18	53343143	53343214	protein_coding	Snx2	intron	ENSMUSG00000034484	ProperStrand	26	1	-inf
chr1	161037378	161037403	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	8	chr11	35924199	35924262	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-12.5160
chr11	109011846	109011872	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	90226197	90226291	protein_coding	Sod1	intron	ENSMUSG00000022982	ProperStrand	43	1	-6.7596
chr16	4940463	4940564	protein_coding	Nudt16l1	utr3	ENSMUSG00000022516	ProperStrand	7	chr2	5379299	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-8.8922
chr11	57320889	57320989	protein_coding-noncoding	Fam114a2	utr3	ENSMUSG00000020523	ProperStrand	1	chr11	57321069	57321159	protein_coding	Fam114a2	intron	ENSMUSG00000020523	ProperStrand	3	1	-inf
chr11	33970843	33970864	processed_transcript	4930469K13Rik	.	ENSMUSG00000085684	ProperStrand	1	chr14	20604339	20604440	protein_coding	Nid2	intron	ENSMUSG00000021806	NonProperStrand	20	1	-inf
chr6	53028346	53028366	SINE	MIRb	MIR	chr6MIRb53028294	NonProperStrand	1	chr15	83149720	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-inf
chr11	60703120	60703188	SINE	RSINE1	B4	chr11RSINE160703115	NonProperStrand	2	chr9	50641001	50641078	protein_coding	Alg9	intron	ENSMUSG00000032059	NonProperStrand	20	2	-inf
chr8	42247380	42247442	SINE	ID_B1	B4	chr8ID_B142247337	ProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr4	80059694	80059784	LTR	IAPEz-int	ERVK	chr4IAPEz-int80057025	ProperStrand	1	chr4	80060235	80060335	LTR	IAPLTR2a	ERVK	chr4IAPLTR2a80059967	ProperStrand	1	1	-inf
chr8	3803242	3803332	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	156	chr11	120262221	120262321	protein_coding	Nploc4	intron	ENSMUSG00000039703	NonProperStrand	167	1	-8.0576
chr17	87979603	87979693	LTR	RMER16-int	ERVK	chr17RMER16-int87979504	NonProperStrand	8	chr3	31205924	31206024	lincRNA	Gm15496	intron	ENSMUSG00000085953	ProperStrand	11	2	-inf
chr12	98753069	98753159	LINE	Lx9	L1	chr12Lx998753076	NonProperStrand	1	chr12	98752958	98753058	Simple_repeat	(TA)n	Simple_repeat	chr12(TA)n98752979	NonProperStrand	1	1	-inf
chr12	107920314	107920404	SINE	B4A	B4	chr12B4A107920315	ProperStrand	2	chr12	107920207	107920307	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n107920202	NonProperStrand	2	2	-inf
chr7	28810965	28811017	LTR	RLTR6-int	ERV1	chr7RLTR6-int28804798	NonProperStrand	2	chr9	123462087	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr6	134212948	134213038	protein_coding	Etv6	intron	ENSMUSG00000030199	NonProperStrand	6	chr6	139908149	139908249	protein_coding	Pik3c2g	intron	ENSMUSG00000030228	ProperStrand	9	1	-inf
chr2	90395147	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr16	45994904	45994933	protein_coding	Plcxd2	intron	ENSMUSG00000087141	ProperStrand	15	1	-12.5403
chr18	62511081	62511098	protein_coding	Htr4	intron	ENSMUSG00000026322	NonProperStrand	28	chr1	187251158	187251280	protein_coding	Eprs	intron	ENSMUSG00000026615	ProperStrand	26	1	-15.2744
chr7	134307616	134307716	LINE	L1M2	L1	chr7L1M2134307523	ProperStrand	1	chr7	134307409	134307499	LTR	RLTR47_MM	ERV1	chr7RLTR47_MM134307062	ProperStrand	1	1	-inf
chr18	10623700	10626850	protein_coding	Snrpd1	exon	ENSMUSG00000002477	ProperStrand	8	chr15	84036159	84036271	protein_coding	Samm50	intron	ENSMUSG00000022437	NonProperStrand	1	1	-inf
chr3	87781052	87781124	protein_coding	Nes	exon	ENSMUSG00000004891	NonProperStrand	1	chr7	96845223	96845285	protein_coding	Me3	intron	ENSMUSG00000030621	ProperStrand	72	1	-inf
chr11	20675071	20675108	LINE	L1M5	L1	chr11L1M520674957	ProperStrand	1	chr11	20675304	20675331	LTR	MTA_Mm	MaLR	chr11MTA_Mm20675250	ProperStrand	1	1	-inf
chr13	38212250	38212350	DNA	Tigger5	MER2_type	chr13Tigger538212240	ProperStrand	2	chr13	38212076	38212166	SINE	B3	B2	chr13B338212029	NonProperStrand	2	2	-inf
chr13	23739123	23739199	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int23738136	NonProperStrand	71	chr15	10470419	10470449	protein_coding	Ttc23l	intron	ENSMUSG00000022249	ProperStrand	53	1	-11.9337
chr18	21221871	21221904	LTR	ETnERV2-int	ERVK	chr18ETnERV2-int21221543	NonProperStrand	1	chr10	62807966	62808048	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	1	-inf
chr3	83058668	83058694	LINE	Lx5	L1	chr3Lx583058368	ProperStrand	1	chr3	83056831	83058668	SINE	B4A	B4	chr3B4A83056785	ProperStrand	1	1	-inf
chr19	10627654	10627854	protein_coding	Tmem216	intron	ENSMUSG00000024667	NonProperStrand	60	chr13	97190545	97190562	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.1223
chr17	39846717	39846746	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	56388482	56388521	SINE	B3A	B2	chr10B3A56388330	ProperStrand	1	1	-inf
chr17	39848498	39848559	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	115569192	115569263	protein_coding	Grb2	intron	ENSMUSG00000059923	NonProperStrand	19	1	-3.7232
chr14	54649505	54649634	LINE	Lx4A	L1	chr14Lx4A54649360	ProperStrand	1	chr14	54650830	54650851	LTR	MLT1E1A	MaLR	chr14MLT1E1A54650372	ProperStrand	1	1	-inf
chr1	100180176	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr2	102829327	102829366	LTR	ORR1C1-int	MaLR	chr2ORR1C1-int102828737	ProperStrand	3	1	-17.0033
chr19	14502636	14502679	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n14502628	NonProperStrand	1	chr17	35963570	35963627	protein_coding	Flot1	intron	ENSMUSG00000059714	NonProperStrand	20	1	-inf
chr19	6366524	6366624	protein_coding	Sf1	intron	ENSMUSG00000024949	ProperStrand	69	chr11	97702437	97702528	protein_coding	B230217C12Rik	intron	ENSMUSG00000089676	NonProperStrand	1	1	-inf
chr5	55920953	55920998	LTR	ORR1B1	MaLR	chr5ORR1B155920915	NonProperStrand	2	chr12	41849908	41850007	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	2	-inf
chr14	79861368	79861458	protein_coding	Wbp4	utr3	ENSMUSG00000022023	NonProperStrand	30	chr9	92241463	92241563	protein_coding	1700057G04Rik	intron	ENSMUSG00000074139	NonProperStrand	2	1	-22.0647
chr6	113992857	113992947	lincRNA	Gm15083	intron	ENSMUSG00000087083	NonProperStrand	2	chr6	113992475	113992575	protein_coding-noncoding	Atp2b2	utr3	ENSMUSG00000030302	ProperStrand	1	1	-inf
chr17	53571448	53571503	protein_coding	Efhb	intron	ENSMUSG00000023931	ProperStrand	6	chr7	38158274	38158353	protein_coding	Zfp536	intron	ENSMUSG00000043456	NonProperStrand	14	1	-19.6103
chr10	97878526	97878616	LINE	L1Md_F2	L1	chr10L1Md_F297878229	NonProperStrand	1	chr10	97878942	97879042	LINE	L1Md_F2	L1	chr10L1Md_F297878612	ProperStrand	1	1	-inf
chr1	87888843	87888943	LTR	MTE2b	MaLR	chr1MTE2b87888685	NonProperStrand	1	chr17	35384443	35384533	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	1	-inf
chr17	39847444	39848032	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	126557111	126592859	protein_coding	Zmym4	exon	ENSMUSG00000042446	NonProperStrand	28	5	-4.6561
chr11	101450547	101450647	protein_coding-noncoding	Tmem106a	utr5	ENSMUSG00000034947	ProperStrand	2	chr11	101450334	101450424	protein_coding	Tmem106a	intron	ENSMUSG00000034947	ProperStrand	25	2	-inf
chr16	28899379	28899452	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	121	chr8	95641278	95641361	protein_coding	Ces1c	intron	ENSMUSG00000057400	NonProperStrand	28	1	-12.1554
chr15	84202801	84202837	LTR	ORR1E	MaLR	chr15ORR1E84202516	NonProperStrand	5	chr15	84202836	84204071	Low_complexity	C-rich	Low_complexity	chr15C-rich84203993	ProperStrand	1	1	-inf
chrX	60077293	60077392	LINE	L1MA9	L1	chrXL1MA960077180	NonProperStrand	1	chr13	97190580	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr4	83612891	83613001	SINE	MIR	MIR	chr4MIR83612822	NonProperStrand	1	chr9	110281286	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr16	55966391	55966434	protein_coding	Rpl24	utr5	ENSMUSG00000022601	ProperStrand	72	chr19	4078296	4078319	snoRNA	ENSMUSG00000064400_U3	.	ENSMUSG00000064400	ProperStrand	6	1	-16.4594
chr11	97781677	97781710	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr14	32563984	32564022	protein_coding	Ankrd28	intron	ENSMUSG00000014496	NonProperStrand	75	1	-13.3476
chr3	40702730	40702820	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	chr4	6867684	6867784	protein_coding	Tox	intron	ENSMUSG00000041272	ProperStrand	5	1	-18.5663
chr12	45481009	45481110	protein_coding	Nrcam	intron	ENSMUSG00000020598	ProperStrand	4	chr8	13417127	13417217	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	1	-inf
chr5	140174707	140174807	SINE	B1_Mur4	Alu	chr5B1_Mur4140174633	NonProperStrand	1	chr5	140174826	140174916	SINE	RSINE1	B4	chr5RSINE1140174804	NonProperStrand	1	1	-inf
chr8	71374682	71375776	LTR	RMER19C	ERVK	chr8RMER19C71374565	NonProperStrand	5	chr8	71375833	71375923	Simple_repeat	(GGA)n	Simple_repeat	chr8(GGA)n71375852	NonProperStrand	5	5	-inf
chr19	24144191	24144245	LINE	L1MA6	L1	chr19L1MA624144016	NonProperStrand	2	chr19	24144386	24144472	LINE	Lx3B	L1	chr19Lx3B24144299	NonProperStrand	1	1	-inf
chr10	121649120	121649220	LINE	L1Md_F2	L1	chr10L1Md_F2121649122	ProperStrand	3	chr10	121649034	121649124	LTR	RMER19B	ERVK	chr10RMER19B121648993	NonProperStrand	3	3	-inf
chr11	100906045	100906145	protein_coding-noncoding	Atp6v0a1	utr5	ENSMUSG00000019302	NonProperStrand	3	chr11	100906149	100906240	protein_coding	Atp6v0a1	intron	ENSMUSG00000019302	NonProperStrand	73	2	-inf
chr10	78196452	78197750	LINE	L1Md_T	L1	chr10L1Md_T78195951	NonProperStrand	4	chr10	78187866	78187981	LINE	Lx6	L1	chr10Lx678187850	NonProperStrand	2	2	-inf
chr11	78181426	78181454	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr15	51806710	51806843	protein_coding	Rad21	intron	ENSMUSG00000022314	ProperStrand	45	1	-11.6790
chr17	70963693	70963762	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr6	51894667	51894717	protein_coding	Skap2	intron	ENSMUSG00000059182	ProperStrand	25	1	-7.9571
chr14	79861999	79862068	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	30	chr16	35821590	35821660	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	1	-11.1104
chr17	39847037	39847098	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	69218675	69218693	protein_coding	Kdm6b	exon	ENSMUSG00000018476	ProperStrand	1	1	-inf
chr6	42454053	42454143	LINE	L1Md_F2	L1	chr6L1Md_F242453866	NonProperStrand	1	chr7	47188517	47188617	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	1	-inf
chr8	83441773	83441873	DNA	RMER30	MER1_type	chr8RMER3083441745	NonProperStrand	1	chr8	83441879	83441969	LTR	ORR1C1	MaLR	chr8ORR1C183441896	NonProperStrand	1	1	-inf
chr10	93226772	93228734	LTR	ORR1D1	MaLR	chr10ORR1D193228401	ProperStrand	3	chr17	39846759	39846810	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr7	100250769	100250817	lincRNA	Gm16744	intron	ENSMUSG00000086002	ProperStrand	5	chr4	106586478	106586624	protein_coding	Ssbp3	intron	ENSMUSG00000061887	ProperStrand	60	1	-17.2006
chr5	31947573	31947598	protein_coding	Mrpl33	intron	ENSMUSG00000029142	ProperStrand	100	chr11	107753429	107753527	protein_coding	Cacng5	intron	ENSMUSG00000040373	ProperStrand	9	1	-14.8896
chr6	113243516	113243616	protein_coding-noncoding	Cpne9	utr5	ENSMUSG00000030270	ProperStrand	5	chr6	113244544	113244634	protein_coding	Cpne9	intron	ENSMUSG00000030270	ProperStrand	20	1	-19.9009
chr8	78517311	78517396	LINE	L1MA5	L1	chr8L1MA578517308	NonProperStrand	3	chr8	78516002	78516077	LTR	RLTR11A	ERVK	chr8RLTR11A78515701	ProperStrand	5	1	-inf
chr2	51860030	51860120	SINE	ID_B1	B4	chr2ID_B151859978	NonProperStrand	1	chr2	51860250	51860350	Simple_repeat	(TC)n	Simple_repeat	chr2(TC)n51860189	ProperStrand	1	1	-inf
chr16	38158015	38158105	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	96	chr1	181112979	181113079	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-9.0993
chr13	98310160	98310996	LTR	MTD	MaLR	chr13MTD98310081	ProperStrand	4	chr16	94865645	94865727	protein_coding	Dyrk1a	intron	ENSMUSG00000022897	ProperStrand	12	1	-22.2547
chr5	115259279	115259388	protein_coding	1500011B03Rik	intron	ENSMUSG00000072694	ProperStrand	6	chr5	115259162	115259287	protein_coding	Gm20499	utr3	ENSMUSG00000092252	ProperStrand	14	2	-21.5887
chr18	38639028	38639120	SINE	B1_Mus1	Alu	chr18B1_Mus138639038	ProperStrand	1	chr18	38639249	38639349	SINE	RSINE1	B4	chr18RSINE138639259	ProperStrand	1	1	-inf
chr17	39846619	39846649	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	60223844	60223911	SINE	B1_Mus2	Alu	chr2B1_Mus260223780	NonProperStrand	1	1	-inf
chr17	39847360	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	43176194	43176243	LTR	ORR1A0	MaLR	chr8ORR1A043176133	NonProperStrand	1	1	-inf
chr10	117829153	117829251	LINE	Lx6	L1	chr10Lx6117828823	NonProperStrand	5	chr2	75663657	75663679	Simple_repeat	(TTTTA)n	Simple_repeat	chr2(TTTTA)n75663637	ProperStrand	11	3	-inf
chr1	79839507	79839607	protein_coding	Serpine2	intron	ENSMUSG00000026249	ProperStrand	41	chr9	68766595	68766685	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	2	-16.3234
chr10	23785413	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chrX	93312538	93312591	protein_coding	Msn	intron	ENSMUSG00000031207	NonProperStrand	27	1	-11.6690
chr3	80323572	80323662	LINE	L1MD	L1	chr3L1MD80323491	NonProperStrand	1	chr3	80323719	80323819	LTR	MLT1F2	MaLR	chr3MLT1F280323697	NonProperStrand	1	1	-inf
chr7	101915146	101915213	LINE	L1_Mus1	L1	chr7L1_Mus1101914765	ProperStrand	1	chr18	74778460	74778517	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	68	1	-inf
chr17	22456817	22456917	LTR	RLTR19-int	ERVK	chr17RLTR19-int22456746	ProperStrand	2	chr17	22456734	22456824	LTR	RLTR6-int	ERV1	chr17RLTR6-int22456716	ProperStrand	2	2	-inf
chr8	85301678	85301760	LTR	HERV16-int	ERVL	chr8HERV16-int85301469	NonProperStrand	1	chr15	99622304	99623588	protein_coding	Lima1	intron	ENSMUSG00000023022	ProperStrand	62	1	-inf
chr5	124793759	124793859	SINE	B1_Mus1	Alu	chr5B1_Mus1124793782	ProperStrand	1	chr5	124793397	124793487	SINE	RSINE1	B4	chr5RSINE1124793413	ProperStrand	1	1	-inf
chr13	98529765	98529789	lincRNA	Gm17290	intron	ENSMUSG00000079172	ProperStrand	1	chr15	80078522	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-inf
chr17	35931279	35931379	SINE	B2_Mm1a	B2	chr17B2_Mm1a35931283	NonProperStrand	1	chr17	35930887	35931234	SINE	B3A	B2	chr17B3A35931100	NonProperStrand	2	1	-inf
chr12	8916515	8916615	LTR	MTA_Mm-int	MaLR	chr12MTA_Mm-int8916497	ProperStrand	1	chr12	8916410	8916500	LTR	MTA_Mm	MaLR	chr12MTA_Mm8916101	ProperStrand	1	1	-inf
chr6	125222392	125222436	SINE	B1_Mus1	Alu	chr6B1_Mus1125222349	NonProperStrand	1	chr6	125231895	125231937	protein_coding	Tuba3a	intron	ENSMUSG00000067702	NonProperStrand	7	1	-inf
chr11	12337234	12337273	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr11	107082789	107082905	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-5.7915
chr11	117664420	117666710	protein_coding	6030468B19Rik	intron	ENSMUSG00000025573	ProperStrand	17	chr11	117685441	117685774	protein_coding	RP23-268N22.1	intron	ENSMUSG00000093485	ProperStrand	53	2	-19.7671
chr2	50402251	50402351	LINE	Lx	L1	chr2Lx50402199	NonProperStrand	1	chr2	50402123	50402213	LTR	LTRIS_Mm	ERV1	chr2LTRIS_Mm50401711	NonProperStrand	1	1	-inf
chr17	6043778	6043808	protein_coding	Serac1	utr3	ENSMUSG00000015659	ProperStrand	35	chr17	6041454	6041559	protein_coding	Synj2	intron	ENSMUSG00000023805	NonProperStrand	11	1	-16.6073
chr4	147861000	147861017	protein_coding	Mtor	exon	ENSMUSG00000028991	NonProperStrand	36	chr11	74932376	74932407	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-11.1355
chr13	44869624	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr18	10151049	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-5.4836
chr12	31341455	31342776	LTR	MTE2a	MaLR	chr12MTE2a31342606	ProperStrand	2	chr17	39846462	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr5	43558963	43559063	LTR	MLT1C	MaLR	chr5MLT1C43558965	NonProperStrand	1	chr10	111772980	111773070	protein_coding	Kcnc2	intron	ENSMUSG00000035681	ProperStrand	5	1	-inf
chr13	44869602	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr19	5388658	5388714	protein_coding	Sart1	utr5	ENSMUSG00000039148	ProperStrand	31	1	-5.7785
chr11	73298141	73298241	LINE	Lx6	L1	chr11Lx673298060	ProperStrand	1	chr11	73297925	73298015	LTR	RMER17A2	ERVK	chr11RMER17A273297781	ProperStrand	1	1	-inf
chr11	16501715	16501785	LTR	ORR1A2-int	MaLR	chr11ORR1A2-int16501173	ProperStrand	2	chr17	39847977	39848032	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr8	61816979	61817062	LINE	L1Md_A	L1	chr8L1Md_A61815885	ProperStrand	6	chr11	76176985	76177013	protein_coding	Nxn	intron	ENSMUSG00000020844	ProperStrand	42	2	-inf
chr10	128040671	128040714	DNA	RCHARR1	MER1_type	chr10RCHARR1128040602	NonProperStrand	4	chr13	97190561	97190589	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr2	24976918	24976977	LINE	L1MB5	L1	chr2L1MB524976794	NonProperStrand	1	chr2	24976979	24977037	Simple_repeat	(TTCC)n	Simple_repeat	chr2(TTCC)n24976993	ProperStrand	1	1	-inf
chr4	111867319	111867337	LINE	L1_Mus3	L1	chr4L1_Mus3111867179	NonProperStrand	1	chr16	32244130	32244227	protein_coding	Fbxo45	intron	ENSMUSG00000035764	ProperStrand	22	1	-inf
chr19	53142984	53143074	SINE	PB1D10	Alu	chr19PB1D1053142970	ProperStrand	5	chr19	53216803	53216903	protein_coding	Add3	intron	ENSMUSG00000025026	ProperStrand	33	5	-inf
chr2	5379271	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr5	27765842	27765904	protein_coding	Dpp6	intron	ENSMUSG00000061576	NonProperStrand	86	1	-3.8670
chrX	155495684	155495784	SINE	B1_Mus1	Alu	chrXB1_Mus1155495700	NonProperStrand	1	chrX	155495513	155495603	SINE	B3A	B2	chrXB3A155495400	ProperStrand	1	1	-inf
chr17	39843856	39843912	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr18	35783773	35783869	protein_coding	Slc23a1	exon	ENSMUSG00000024354	NonProperStrand	7	1	-7.2053
chr13	23571680	23571792	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	chr4	106654726	106654743	protein_coding	Ssbp3	intron	ENSMUSG00000061887	NonProperStrand	25	1	-14.7249
chr4	126915326	126923067	SINE	B1_Mur3	Alu	chr4B1_Mur3126915527	ProperStrand	4	chr4	126915222	126915322	SINE	B4A	B4	chr4B4A126915246	ProperStrand	5	4	-inf
chr7	125672689	125672830	protein_coding-noncoding	Coq7	utr3	ENSMUSG00000030652	ProperStrand	10	chr15	76120913	76120930	protein_coding	Spatc1	intron	ENSMUSG00000049653	NonProperStrand	21	1	-17.7470
chr17	24720821	24720850	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr5	128602430	128602446	protein_coding	Tmem132d	intron	ENSMUSG00000034310	ProperStrand	110	1	-7.7909
chr14	122387286	122451062	SINE	PB1D9	Alu	chr14PB1D9122410193	NonProperStrand	6	chr13	44869577	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.1685
chr17	39847511	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	113844000	113844047	LTR	ORR1C1	MaLR	chr5ORR1C1113843867	NonProperStrand	1	1	-inf
chr16	19041554	19041654	LTR	MTEb	MaLR	chr16MTEb19041488	NonProperStrand	4	chr16	19041340	19041430	LTR	RLTR13B1	ERVK	chr16RLTR13B119041360	ProperStrand	1	1	-inf
chr17	39847903	39848005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	127257256	127257305	protein_coding	Gpat2	intron	ENSMUSG00000046338	NonProperStrand	1	1	-inf
chr17	39846462	39846637	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	44156635	44163406	protein_coding	Vps11	exon	ENSMUSG00000032127	ProperStrand	7	2	-4.6854
chr1	127352643	127352743	SINE	B1_Mur3	Alu	chr1B1_Mur3127352668	ProperStrand	1	chr1	127352524	127352614	SINE	RSINE1	B4	chr1RSINE1127352472	ProperStrand	1	1	-inf
chr17	39846452	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	132744854	132744955	protein_coding-noncoding	Gstcd	utr3	ENSMUSG00000028018	NonProperStrand	1	1	-inf
chr2	28469985	28470035	protein_coding	Gfi1b	intron	ENSMUSG00000026815	NonProperStrand	6	chr13	97190561	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr11	50270266	50270366	SINE	B1_Mur2	Alu	chr11B1_Mur250270266	ProperStrand	1	chr11	50270404	50270494	Simple_repeat	(GGA)n	Simple_repeat	chr11(GGA)n50270410	NonProperStrand	1	1	-inf
chr10	128076742	128076788	protein_coding	Ikzf4	intron	ENSMUSG00000002578	NonProperStrand	38	chr10	127561999	127562035	protein_coding	Baz2a	exon	ENSMUSG00000040054	NonProperStrand	148	1	-11.1316
chrX	60108199	60108234	LINE	L1_Mm	L1	chrXL1_Mm60108005	NonProperStrand	1	chr17	39846580	39846605	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	19657621	19657846	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr7	103550784	103550888	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	2	-16.9491
chr7	54033553	54033643	protein_coding-noncoding	Hps5	utr3	ENSMUSG00000014418	ProperStrand	1	chr7	54033409	54033509	protein_coding	Hps5	exon	ENSMUSG00000014418	ProperStrand	1	1	-inf
chr4	117202569	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	chr7	30455904	30455969	LTR	RMER17B	ERVK	chr7RMER17B30455805	ProperStrand	1	1	-inf
chr11	111891317	111891334	SINE	B4A	B4	chr11B4A111891146	ProperStrand	1	chr1	33615616	33615734	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	1	-inf
chr17	39847011	39847037	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	33949278	33949406	protein_coding	Kank3	intron	ENSMUSG00000042099	ProperStrand	5	1	-3.1907
chr4	53860740	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr4	117154513	117154583	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-6.6673
chr1	119035778	119035878	LINE	L1Md_F3	L1	chr1L1Md_F3119034588	NonProperStrand	13	chr1	119035966	119036056	LINE	L1Md_F3	L1	chr1L1Md_F3119035915	NonProperStrand	11	2	-inf
chr11	109011790	109011852	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	49219691	49219786	LTR	RMER6C	ERVK	chr11RMER6C49219498	ProperStrand	3	1	-12.4363
chr9	69160435	69160470	protein_coding	Rora	intron	ENSMUSG00000032238	NonProperStrand	32	chr15	86249621	86249684	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-10.0595
chr1	75236506	75236893	protein_coding	Dnajb2	intron	ENSMUSG00000026203	ProperStrand	5	chr1	131934810	131934866	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-14.1333
chr9	40804747	40804794	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr7	134937738	134937816	protein_coding	Setd1a	intron	ENSMUSG00000042308	ProperStrand	59	1	-7.4730
chr13	75726443	75726527	LINE	L1Md_F2	L1	chr13L1Md_F275726445	NonProperStrand	1	chr13	97190567	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr4	121588574	121588674	LINE	L1_Mur2	L1	chr4L1_Mur2121588533	ProperStrand	1	chr4	121588430	121588520	Simple_repeat	(GGGAGA)n	Simple_repeat	chr4(GGGAGA)n121588381	ProperStrand	1	1	-inf
chr17	39847037	39847141	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	134922065	134922118	SINE	B3	B2	chr4B3134922035	ProperStrand	1	1	-inf
chr4	134526438	134526501	Simple_repeat	(TCCA)n	Simple_repeat	chr4(TCCA)n134526393	ProperStrand	1	chr1	136364891	136364969	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-inf
chr6	124741224	124741280	SINE	B4	B4	chr6B4124741003	NonProperStrand	12	chr19	23942568	23942614	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	1	-13.2412
chr12	59040423	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.6348
chr11	8559700	8559749	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr8	119928290	119928349	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-6.1959
chr2	44861505	44861605	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	25	chr17	3117255	3117345	protein_coding	Scaf8	intron	ENSMUSG00000046201	ProperStrand	73	3	-inf
chr12	108227764	108227827	LINE	HAL1-3A_ME	L1	chr12HAL1-3A_ME108227760	ProperStrand	1	chr12	108219397	108219463	SINE	B1_Mus1	Alu	chr12B1_Mus1108219382	ProperStrand	1	1	-inf
chr6	72316481	72316552	LTR	MTD	MaLR	chr6MTD72316484	ProperStrand	1	chr15	77113621	77116937	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	1	-inf
chr17	88002962	88008602	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	57	chr15	6787036	6787062	protein_coding	Osmr	exon	ENSMUSG00000022146	NonProperStrand	23	1	-14.0702
chr4	108729264	108729354	protein_coding-noncoding	Nrd1	utr5	ENSMUSG00000053510	ProperStrand	1	chr4	108729447	108729547	protein_coding	Nrd1	intron	ENSMUSG00000053510	ProperStrand	2	1	-inf
chr1	139095127	139095227	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n139095126	ProperStrand	2	chr1	139095004	139095094	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n139094994	ProperStrand	1	1	-inf
chrX	95025862	95025881	LINE	L1M2	L1	chrXL1M295025539	NonProperStrand	10	chr7	98588193	98588257	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-11.0788
chr10	17903727	17903744	LINE	Lx8	L1	chr10Lx817903716	NonProperStrand	2	chr16	77144341	77144431	LINE	Lx8	L1	chr16Lx877144114	NonProperStrand	1	1	-inf
chr17	39847174	39847239	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	103119684	103123519	lincRNA	Gm12718	intron	ENSMUSG00000086136	ProperStrand	37	3	-3.0101
chr3	144434633	144434658	LINE	L1Md_F2	L1	chr3L1Md_F2144433613	ProperStrand	1	chr3	144437624	144437678	LINE	L1Md_T	L1	chr3L1Md_T144437420	ProperStrand	11	1	-inf
chr11	109011722	109011762	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	68154187	68154259	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	1	-3.4581
chr2	131918630	131918720	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	chr6	21953816	21953916	protein_coding	A430107O13Rik	intron	ENSMUSG00000062980	ProperStrand	20	1	-13.7012
chr6	120266412	120266484	LTR	LTRIS3	ERV1	chr6LTRIS3120266419	ProperStrand	2	chr19	4800966	4801049	protein_coding	Rbm14	utr3	ENSMUSG00000006456	ProperStrand	194	1	-17.0804
chr3	27144217	27144314	protein_coding	Nceh1	intron	ENSMUSG00000027698	NonProperStrand	62	chr10	58482276	58482335	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-10.0519
chr10	75184415	75184480	protein_coding	Cabin1	intron	ENSMUSG00000020196	ProperStrand	7	chr4	24621989	24622070	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-15.3554
chr9	47838925	47839015	DNA	URR1A	MER1_type	chr9URR1A47838860	ProperStrand	1	chr9	47839016	47839116	LINE	L1MA9	L1	chr9L1MA947839039	NonProperStrand	1	1	-inf
chr4	53860740	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr16	48292628	48292686	protein_coding	Dppa4	intron	ENSMUSG00000058550	ProperStrand	20	1	-11.6534
chr7	108934538	108941640	protein_coding	Clpb	intron	ENSMUSG00000001829	ProperStrand	16	chr9	123461931	123462031	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-5.9898
chr2	9843082	9843101	protein_coding	Taf3	intron	ENSMUSG00000025782	NonProperStrand	8	chr8	70509310	70509578	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-11.5358
chr18	60848830	60848883	protein_coding	Ndst1	utr3	ENSMUSG00000054008	ProperStrand	5	chr5	108607005	108609453	protein_coding	Ccdc18	intron	ENSMUSG00000056531	NonProperStrand	57	1	-17.3037
chr18	34804797	34811088	protein_coding-noncoding	Cdc23	utr3	ENSMUSG00000024370	NonProperStrand	9	chr18	34804964	34810949	protein_coding	Cdc23	exon	ENSMUSG00000024370	NonProperStrand	28	2	-21.0653
chr18	65031372	65031450	SINE	PB1D10	Alu	chr18PB1D1065031375	ProperStrand	1	chr16	15797911	15797983	protein_coding	Prkdc	intron	ENSMUSG00000022672	ProperStrand	42	1	-inf
chr4	24628599	24628616	protein_coding	Klhl32	intron	ENSMUSG00000040387	ProperStrand	26	chr13	97190563	97190614	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.7743
chr17	46616211	46616283	protein_coding	Ttbk1	intron	ENSMUSG00000015599	ProperStrand	78	chr12	54696780	54696855	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-9.8525
chr2	119578017	119578123	protein_coding-noncoding	Ltk	utr3	ENSMUSG00000027297	NonProperStrand	1	chr9	94843283	94843312	protein_coding	Slc9a9	intron	ENSMUSG00000031129	NonProperStrand	17	1	-inf
chr9	118674951	118674988	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr1	74088583	74088673	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	1	-5.4820
chr10	51234481	51234499	LINE	Lx2B	L1	chr10Lx2B51233822	NonProperStrand	5	chr17	39847444	39847537	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr10	122566308	122566365	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr12	78350926	78351029	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.3781
chr14	30675354	30675456	LINE	Lx7	L1	chr14Lx730675379	ProperStrand	1	chr14	30674379	30674410	SINE	B1F2	Alu	chr14B1F230674320	ProperStrand	1	1	-inf
chr17	64080638	64080717	LINE	L1_Mm	L1	chr17L1_Mm64078624	ProperStrand	10	chr17	64083207	64083268	SINE	B1_Mm	Alu	chr17B1_Mm64083144	ProperStrand	1	1	-inf
chr10	78409290	78409316	LINE	L1Md_T	L1	chr10L1Md_T78408709	NonProperStrand	4	chr9	123462042	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr17	39846734	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	7293761	7293851	SINE	B2_Mm1a	B2	chr19B2_Mm1a7293758	ProperStrand	1	1	-inf
chr8	79154377	79154440	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	chr14	28248582	28248644	protein_coding	D14Abb1e	intron	ENSMUSG00000040651	ProperStrand	5	1	-15.7006
chr1	149653425	149653442	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int149652500	ProperStrand	16	chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.1067
chr2	122246282	122246382	Low_complexity	T-rich	Low_complexity	chr2T-rich122246284	ProperStrand	1	chr2	122246172	122246262	SINE	B1_Mm	Alu	chr2B1_Mm122246137	NonProperStrand	1	1	-inf
chr2	44777323	44777413	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	85	chr4	25707911	25708011	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-11.2238
chr7	12930796	12930817	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr10	128018159	128018285	protein_coding	Erbb3	intron	ENSMUSG00000018166	NonProperStrand	10	1	-15.1183
chrX	95025635	95025653	LINE	L1M2	L1	chrXL1M295025539	NonProperStrand	10	chr6	88312164	88312265	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	1	-12.5711
chr17	78919981	78920081	protein_coding	Vit	intron	ENSMUSG00000024076	ProperStrand	15	chr13	97190562	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-12.6895
chr7	12930794	12930854	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr11	115523710	115530357	protein_coding	Grb2	intron	ENSMUSG00000059923	ProperStrand	75	1	-10.9951
chrX	96149594	96149633	LINE	Lx	L1	chrXLx96149558	NonProperStrand	1	chr17	39847257	39847286	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	73087993	73088010	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	15	chr14	24207874	24208008	protein_coding	Kcnma1	intron	ENSMUSG00000063142	ProperStrand	191	1	-12.5197
chr12	94740223	94740313	LINE	L1MC	L1	chr12L1MC94740224	ProperStrand	1	chr12	94740070	94740170	SINE	B3A	B2	chr12B3A94740031	ProperStrand	1	1	-inf
chr10	76554385	76554447	protein_coding	Col18a1	intron	ENSMUSG00000001435	NonProperStrand	68	chr12	82262866	82262938	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	3	-22.2488
chrX	73717523	73717539	LINE	Lx4A	L1	chrXLx4A73716724	ProperStrand	12	chr9	57530248	57531686	protein_coding	Cyp1a2	utr5	ENSMUSG00000032310	NonProperStrand	7	1	-20.6365
chr17	39846818	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	24529986	24530066	SINE	RSINE1	B4	chr18RSINE124529983	NonProperStrand	1	1	-inf
chr1	106539429	106539445	LINE	L1Md_F2	L1	chr1L1Md_F2106538943	NonProperStrand	1	chr9	59664620	59664739	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr10	128046228	128047685	SINE	B1_Mus2	Alu	chr10B1_Mus2128046309	ProperStrand	3	chr15	93346684	93346703	protein_coding	Prickle1	intron	ENSMUSG00000036158	NonProperStrand	23	1	-19.7972
chr7	101908890	101908980	DNA	MER33	MER1_type	chr7MER33101908849	NonProperStrand	1	chr7	101909072	101909172	LTR	MTE2a	MaLR	chr7MTE2a101909075	NonProperStrand	4	1	-inf
chrX	118808920	118809020	LINE	Lx4B	L1	chrXLx4B118808650	ProperStrand	1	chr17	94269250	94269340	SINE	RSINE1	B4	chr17RSINE194269261	ProperStrand	1	1	-inf
chr9	123461797	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr7	3685679	3685791	pseudogene	Gm15922	.	ENSMUSG00000081665	ProperStrand	13	1	-3.8693
chr6	88444539	88444586	protein_coding	Ruvbl1	intron	ENSMUSG00000030079	NonProperStrand	47	chr6	88396109	88396166	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	2	-14.8868
chr7	144578899	144578930	protein_coding	9430038I01Rik	utr3	ENSMUSG00000040139	ProperStrand	3	chr1	79628270	79628377	protein_coding	Ap1s3	intron	ENSMUSG00000054702	ProperStrand	24	1	-20.7706
chr14	34288521	34288542	LTR	MLT1A1	MaLR	chr14MLT1A134288496	ProperStrand	1	chr7	127979953	127980204	SINE	ID_B1	B4	chr7ID_B1127980129	ProperStrand	9	1	-inf
chr4	137552254	137552824	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr5	17776747	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-6.0440
chr4	147702466	147702533	DNA	MER117	MER1_type	chr4MER117147702456	ProperStrand	2	chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chr11	60427456	60427575	lincRNA	Gm17423	intron	ENSMUSG00000090281	ProperStrand	17	chr5	140524793	140524835	protein_coding	Mad1l1	intron	ENSMUSG00000029554	NonProperStrand	52	1	-14.8772
chr17	39846816	39846837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	43774023	43774054	SINE	MIR	MIR	chr9MIR43773932	NonProperStrand	1	1	-inf
chr8	70895759	71251188	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr2	5379234	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	3	-8.0490
chr6	136552454	136552477	protein_coding	Atf7ip	intron	ENSMUSG00000030213	ProperStrand	23	chr2	52897813	52897901	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	1	-11.7711
chr17	26118505	26118605	protein_coding	Solh	intron	ENSMUSG00000037326	NonProperStrand	5	chr13	44869586	44869676	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr9	68766592	68766692	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	chr9	118772499	118772589	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	2	-11.3494
chr19	53621011	53621110	SINE	B1_Mur2	Alu	chr19B1_Mur253621018	NonProperStrand	1	chr19	53620831	53620921	SINE	B3	B2	chr19B353620787	NonProperStrand	1	1	-inf
chr11	30387590	30387718	LINE	L1_Mur2	L1	chr11L1_Mur230387544	ProperStrand	1	chr6	3201485	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr17	25917389	25917489	protein_coding-noncoding	Narfl	utr5	ENSMUSG00000002280	ProperStrand	1	chr17	25916885	25916975	protein_coding	Narfl	intron	ENSMUSG00000002280	ProperStrand	1	1	-inf
chr5	149416723	149416823	LTR	MTE-int	MaLR	chr5MTE-int149416656	ProperStrand	4	chr5	149416867	149416957	SINE	RSINE1	B4	chr5RSINE1149416891	NonProperStrand	4	4	-inf
chr2	20195643	20279262	protein_coding	Etl4	intron	ENSMUSG00000036617	NonProperStrand	26	chr2	20113385	20603674	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	2	-16.3264
chr2	30087155	30088563	LTR	MURVY-int	ERV1	chr2MURVY-int30083619	ProperStrand	2	chr2	30088576	30088789	LTR	MURVY-int	ERV1	chr2MURVY-int30087557	ProperStrand	4	2	-inf
chr19	10226989	10227131	LINE	Lx7	L1	chr19Lx710226815	ProperStrand	1	chr6	101151694	101151710	protein_coding	Pdzrn3	intron	ENSMUSG00000035357	ProperStrand	27	1	-inf
chr1	179356993	179357040	LTR	MLT1J	MaLR	chr1MLT1J179356992	ProperStrand	1	chr15	74466637	74466693	protein_coding	1700016M24Rik	utr5	ENSMUSG00000022603	ProperStrand	4	1	-inf
chr16	35981707	35981761	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr1	64733479	64733495	antisense	2810408I11Rik	.	ENSMUSG00000087213	ProperStrand	99	1	-9.1136
chr10	7120515	7120584	LINE	L1VL1	L1	chr10L1VL17120146	ProperStrand	2	chr17	39847236	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr9	99730019	99730109	SINE	B4A	B4	chr9B4A99729845	ProperStrand	1	chr9	99729769	99729869	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n99729741	NonProperStrand	1	1	-inf
chr6	113060533	113060551	protein_coding-noncoding	Setd5	utr5	ENSMUSG00000034269	ProperStrand	3	chr6	113060297	113060418	protein_coding	Setd5	exon	ENSMUSG00000034269	ProperStrand	29	1	-19.5983
chr17	45571508	45571548	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	chr16	36060841	36060882	protein_coding	Fam162a	intron	ENSMUSG00000003955	ProperStrand	95	1	-10.3987
chr6	35259912	35260012	SINE	B1F	Alu	chr6B1F35259889	ProperStrand	1	chr6	35260149	35260239	SINE	ID4	ID	chr6ID435260145	NonProperStrand	1	1	-inf
chr8	46578318	46578408	DNA	Tigger5	MER2_type	chr8Tigger546578223	ProperStrand	1	chr10	21364294	21364394	LTR	IAPEz-int	ERVK	chr10IAPEz-int21362476	NonProperStrand	11	1	-inf
chr2	5813761	5813839	protein_coding	Sec61a2	intron	ENSMUSG00000025816	ProperStrand	23	chr9	120878862	120878909	protein_coding	Ulk4	intron	ENSMUSG00000040936	ProperStrand	30	1	-15.3737
chr11	69921329	69921362	SINE	B1_Mus1	Alu	chr11B1_Mus169921308	NonProperStrand	1	chr10	77054960	77055048	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	NonProperStrand	42	1	-inf
chr13	119699298	119699371	LTR	ERVL-E-int	ERVL	chr13ERVL-E-int119699194	ProperStrand	1	chr10	19905975	19906038	protein_coding	Mtap7	intron	ENSMUSG00000019996	NonProperStrand	44	1	-inf
chr3	41576856	41576946	LINE	L2	L2	chr3L241576339	ProperStrand	8	chr3	41576979	41577079	SINE	B1F2	Alu	chr3B1F241576980	NonProperStrand	3	3	-inf
chr17	39846628	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	58734005	58734057	protein_coding	Cldn25	utr3	ENSMUSG00000022744	ProperStrand	2	1	-5.3533
chr15	36592039	36592064	SINE	B3	B2	chr15B336591921	ProperStrand	1	chr9	40804026	40804059	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr17	39843494	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr18	67968379	67968437	protein_coding	Cep192	intron	ENSMUSG00000024542	ProperStrand	23	1	-4.3276
chr11	53300099	53300166	Other	RMER1A	Other	chr11RMER1A53299639	ProperStrand	43	chr6	115807974	115808051	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-11.5132
chr3	37481454	37481648	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	chr10	127592012	127592037	protein_coding	Rbms2	intron	ENSMUSG00000040043	ProperStrand	38	1	-14.9868
chr12	49895361	49895461	LTR	MTC	MaLR	chr12MTC49895137	ProperStrand	1	chr12	49895634	49895724	Simple_repeat	(TCTA)n	Simple_repeat	chr12(TCTA)n49895635	NonProperStrand	1	1	-inf
chrX	159376410	159377472	protein_coding	Ctps2	intron	ENSMUSG00000031360	ProperStrand	26	chr16	17012527	17012574	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	1	-12.9233
chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr10	61693078	61693211	protein_coding	Tspan15	intron	ENSMUSG00000037031	NonProperStrand	51	1	-10.2720
chr11	116757692	116757746	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr11	120349722	120349786	protein_coding	Mrpl12	utr3	ENSMUSG00000039640	ProperStrand	3	1	-19.0162
chr17	39848205	39848278	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	58673275	58673358	protein_coding	Hcn4	intron	ENSMUSG00000032338	ProperStrand	2	1	-8.4422
chr7	46880015	46880044	DNA	URR1A	MER1_type	chr7URR1A46879923	NonProperStrand	1	chr2	22744850	22744900	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-inf
chr17	36846795	36846885	LINE	L1Md_T	L1	chr17L1Md_T36844269	ProperStrand	4	chr4	111440438	111440538	protein_coding	Spata6	intron	ENSMUSG00000034401	ProperStrand	15	1	-inf
chr11	87853060	87853151	antisense	Gm11508	.	ENSMUSG00000086193	NonProperStrand	7	chr11	87853261	87853361	lincRNA	2010015M23Rik	exon	ENSMUSG00000091914	NonProperStrand	3	2	-inf
chr11	86358078	86358103	protein_coding	Rps6kb1	exon	ENSMUSG00000020516	ProperStrand	34	chr2	49118727	49118762	protein_coding	Mbd5	intron	ENSMUSG00000036792	ProperStrand	50	1	-13.5390
chr17	39847103	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	143233259	143233275	SINE	B3	B2	chr7B3143233184	NonProperStrand	1	1	-inf
chr4	24628600	24628616	protein_coding	Klhl32	intron	ENSMUSG00000040387	ProperStrand	26	chr7	30869898	30869916	protein_coding	Zfp566	intron	ENSMUSG00000078768	ProperStrand	1	1	-inf
chr2	120555457	120555574	protein_coding-noncoding	Cdan1	utr3	ENSMUSG00000027284	ProperStrand	2	chr9	123461848	123461872	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr17	39847174	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	38332146	38333228	SINE	B2_Mm2	B2	chr18B2_Mm238333044	ProperStrand	1	1	-inf
chr13	9834332	9834372	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr12	99645565	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	1	-9.1759
chr2	102829375	102829447	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.7327
chr6	3201474	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	168601392	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	1	-4.6059
chr16	70728780	70728870	LINE	L4	RTE	chr16L470728776	NonProperStrand	1	chr16	70728539	70728639	LTR	MT2B2	ERVL	chr16MT2B270728134	NonProperStrand	1	1	-inf
chr5	112326424	112327494	DNA	MER20B	MER1_type	chr5MER20B112326327	NonProperStrand	1	chr17	39847477	39847526	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	102478697	102483195	LTR	MLT2B4	ERVL	chr15MLT2B4102478688	ProperStrand	1	chr17	39847180	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr10	57006662	57006752	LINE	L1MA8	L1	chr10L1MA857006437	ProperStrand	1	chr10	57006837	57006937	SINE	B3	B2	chr10B357006826	ProperStrand	1	1	-inf
chr17	39843909	39843994	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr8	73020960	73021029	protein_coding	Crlf1	intron	ENSMUSG00000007888	NonProperStrand	14	1	-6.8501
chr10	78025997	78026087	LTR	RLTR33	ERVK	chr10RLTR3378025956	NonProperStrand	2	chr17	39847837	39847937	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr1	122357204	122357230	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr6	94212111	94212235	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-3.3161
chr14	19778107	19778761	LINE	Lx4B	L1	chr14Lx4B19777257	NonProperStrand	15	chr10	60081196	60081248	protein_coding	Cdh23	intron	ENSMUSG00000012819	NonProperStrand	234	1	-12.1129
chr18	48655710	48655800	LINE	L1Md_F2	L1	chr18L1Md_F248655228	ProperStrand	1	chr18	48655983	48656083	LINE	L1_Mur1	L1	chr18L1_Mur148655832	NonProperStrand	1	1	-inf
chr2	161041974	161042059	lincRNA	Gm14243	exon	ENSMUSG00000067745	NonProperStrand	16	chr15	37460710	37460768	protein_coding	Ncald	intron	ENSMUSG00000051359	ProperStrand	16	1	-17.5096
chr10	83417266	83417366	Simple_repeat	(CATTC)n	Simple_repeat	chr10(CATTC)n83417224	ProperStrand	1	chr19	61174764	61174854	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	16	1	-inf
chr8	114552715	114552754	SINE	B3A	B2	chr8B3A114552678	ProperStrand	6	chr5	31935918	31935967	protein_coding	Mrpl33	intron	ENSMUSG00000029142	ProperStrand	100	2	-inf
chr13	106839343	106839443	LINE	L1_Mur1	L1	chr13L1_Mur1106839304	ProperStrand	1	chr1	72244360	72244402	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-inf
chr5	146261265	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	118674950	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	7	-15.4615
chr13	114037129	114037196	LINE	L1Md_F2	L1	chr13L1Md_F2114035903	NonProperStrand	21	chr4	129515664	129515688	protein_coding	Ptp4a2	intron	ENSMUSG00000028788	ProperStrand	78	1	-13.6242
chr11	109011800	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	98310989	98313124	LINE	Lx8	L1	chr13Lx898310655	ProperStrand	1	1	-inf
chr10	52747433	52747527	protein_coding	Slc35f1	intron	ENSMUSG00000038602	ProperStrand	51	chr10	117220423	117220543	protein_coding	Nup107	intron	ENSMUSG00000052798	NonProperStrand	2	1	-20.2963
chr10	81636370	81638112	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int81635823	ProperStrand	14	chr10	81635125	81635744	SINE	B1_Mm	Alu	chr10B1_Mm81635682	ProperStrand	11	11	-inf
chr11	10566990	10567090	LINE	L1Md_F2	L1	chr11L1Md_F210567007	NonProperStrand	1	chr11	10566581	10566671	SINE	B1_Mus1	Alu	chr11B1_Mus110566548	NonProperStrand	1	1	-inf
chr17	39843691	39843947	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chrX	134430433	134605348	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	3	-4.3060
chr11	81731240	81731330	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	161	chr4	114182073	114182173	protein_coding	Gm12824	intron	ENSMUSG00000070867	NonProperStrand	3	1	-16.4170
chr14	20141471	20141530	LINE	L1Md_T	L1	chr14L1Md_T20136469	NonProperStrand	11	chr11	48800864	48800933	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-12.7330
chr2	160983145	160983699	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n160983145	NonProperStrand	1	chr11	120346436	120346483	protein_coding-noncoding	Mrpl12	utr5	ENSMUSG00000039640	NonProperStrand	20	1	-inf
chr6	143076639	143076724	SINE	B1_Mus2	Alu	chr6B1_Mus2143076621	NonProperStrand	1	chr7	24204341	24204416	protein_coding	Nlrp5	intron	ENSMUSG00000015721	NonProperStrand	13	1	-inf
chr17	50420127	50420176	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr12	112468830	112468904	protein_coding	Traf3	intron	ENSMUSG00000021277	NonProperStrand	9	1	-13.8352
chr17	39848410	39848460	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	56719477	56719537	protein_coding	Ctsg	exon	ENSMUSG00000040314	ProperStrand	4	1	-6.6701
chr8	27244864	27244964	protein_coding	Rnf170	intron	ENSMUSG00000013878	NonProperStrand	24	chr2	44861506	44861595	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	3	-inf
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr5	146261143	146261189	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-5.4573
chr17	39847255	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	3660800	3660831	SINE	PB1D10	Alu	chr7PB1D103660771	ProperStrand	2	2	-inf
chr2	90395146	90395173	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr8	101986135	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-9.7551
chr11	52268844	52268884	LTR	ORR1A4	MaLR	chr11ORR1A452268668	ProperStrand	1	chr17	39848099	39848164	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr8	114975438	114975507	LINE	L1Md_A	L1	chr8L1Md_A114975184	NonProperStrand	1	chr8	114979802	114979881	LTR	ORR1A4	MaLR	chr8ORR1A4114979631	ProperStrand	1	1	-inf
chr14	37889965	37890065	SINE	B4A	B4	chr14B4A37889868	ProperStrand	1	chr14	37889668	37889758	SINE	MIRb	MIR	chr14MIRb37889693	NonProperStrand	1	1	-inf
chr4	53860733	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr12	109635835	109635951	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-5.2416
chr2	154551790	154551909	lincRNA	Gm14216	intron	ENSMUSG00000085691	NonProperStrand	14	chr9	123461997	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr18	65660019	65660109	SINE	B2_Mm2	B2	chr18B2_Mm265659914	NonProperStrand	1	chr18	65660132	65660232	SINE	B3A	B2	chr18B3A65660116	NonProperStrand	1	1	-inf
chr8	44952269	44952336	LINE	L1Md_F3	L1	chr8L1Md_F344951540	NonProperStrand	18	chr8	44951220	44951310	LINE	Lx7	L1	chr8Lx744951067	NonProperStrand	3	1	-21.7122
chr8	110830669	110830769	DNA	BLACKJACK	AcHobo	chr8BLACKJACK110830439	NonProperStrand	2	chr8	110830766	110830856	SINE	ID4_	ID	chr8ID4_110830782	NonProperStrand	1	1	-inf
mmu-miR-6240	2	26	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	27	chr2	5379299	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	3	-14.1306
chr8	113592017	113592107	SINE	B1_Mus1	Alu	chr8B1_Mus1113592041	ProperStrand	1	chr8	113591769	113591869	SINE	B2_Mm1t	B2	chr8B2_Mm1t113591654	ProperStrand	1	1	-inf
chr11	109011826	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	17222212	17222246	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	11	1	-9.5336
chr8	87745118	87745254	LTR	RMER21A	ERV1	chr8RMER21A87744728	NonProperStrand	3	chr14	30918118	30918136	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	1	-16.1194
chr8	84957681	84957763	LINE	L1_Mus1	L1	chr8L1_Mus184951487	NonProperStrand	3	chr17	39847659	39847729	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr3	95847543	95847768	protein_coding	Vps45	intron	ENSMUSG00000015747	ProperStrand	31	chr15	37992111	37992171	protein_coding	Ubr5	intron	ENSMUSG00000037487	ProperStrand	87	1	-12.6107
chr11	9129566	9131636	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	chr14	48178053	48178109	protein_coding	Atg14	intron	ENSMUSG00000037526	NonProperStrand	12	1	-14.9240
chr14	122214201	122214270	LINE	Lx6	L1	chr14Lx6122213877	NonProperStrand	3	chr17	39847442	39847486	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39847609	39847638	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	64016757	64016885	pseudogene	Gm18294	.	ENSMUSG00000093416	NonProperStrand	4	1	-3.7035
chr10	111497652	111497704	protein_coding	Glipr1l1	intron	ENSMUSG00000020213	ProperStrand	8	chr4	137621922	137622026	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-12.0674
chr17	39843588	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	97533804	97533841	protein_coding	Mllt6	exon	ENSMUSG00000038437	NonProperStrand	19	1	-4.6992
chr5	34699535	34699593	SINE	B1F1	Alu	chr5B1F134699495	NonProperStrand	3	chr9	95657005	95657053	protein_coding	Pls1	intron	ENSMUSG00000049493	NonProperStrand	16	1	-inf
chr2	71290115	71290215	LINE	Lx8	L1	chr2Lx871289704	NonProperStrand	1	chr2	71290352	71290442	SINE	B2_Mm2	B2	chr2B2_Mm271290300	ProperStrand	1	1	-inf
chr17	75532273	75532335	protein_coding	Ltbp1	intron	ENSMUSG00000001870	NonProperStrand	24	chr13	49599068	49599106	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	99	1	-12.8723
chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	35299978	35300081	lincRNA	Gm12766	intron	ENSMUSG00000085124	NonProperStrand	4	1	-3.6552
chr11	22956651	22956689	LINE	L1MD	L1	chr11L1MD22956594	ProperStrand	8	chr11	22900042	22956457	LTR	ORR1A4	MaLR	chr11ORR1A422956130	NonProperStrand	1	1	-inf
chr17	39846721	39846790	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	5094966	5095025	protein_coding	Cnih2	intron	ENSMUSG00000024873	NonProperStrand	3	1	-4.3017
chr17	39847257	39847339	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	78477250	78477275	antisense	4921509A06Rik	.	ENSMUSG00000091147	ProperStrand	2	1	-6.5615
chr17	65972843	65972919	SINE	B1F2	Alu	chr17B1F265972820	ProperStrand	1	chr9	68766559	68766612	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-inf
chr6	112906390	112906478	SINE	PB1D10	Alu	chr6PB1D10112906401	NonProperStrand	1	chr12	113105017	113105077	protein_coding	Ppp1r13b	intron	ENSMUSG00000021285	NonProperStrand	48	1	-inf
chr1	122357187	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr16	20680002	20680783	protein_coding	Eif4g1	intron	ENSMUSG00000045983	ProperStrand	123	1	-7.4760
chr14	56730583	56730660	LINE	L1Md_F3	L1	chr14L1Md_F356728770	ProperStrand	10	chr17	39845894	39845973	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-5.3115
chr16	15444621	15444659	LINE	L1Md_T	L1	chr16L1Md_T15441877	NonProperStrand	1	chr17	39847221	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	99967121	99970013	protein_coding	Ror1	intron	ENSMUSG00000035305	ProperStrand	128	chr7	49889429	49889470	protein_coding	9830147E19Rik	intron	ENSMUSG00000074158	NonProperStrand	3	1	-16.8785
chr5	146261154	146261218	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	101196564	101196643	protein_coding	Aoc3	intron	ENSMUSG00000019326	NonProperStrand	24	1	-6.8742
chr1	24827491	24827581	LINE	Lx6	L1	chr1Lx624827305	NonProperStrand	1	chr1	24827888	24827988	LTR	MER34	ERV1	chr1MER3424827738	ProperStrand	1	1	-inf
chr17	39846401	39846882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	167024453	167065360	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	12	-5.6613
chr6	4642517	4642535	protein_coding	Sgce	intron	ENSMUSG00000004631	ProperStrand	9	chr3	122480915	122481026	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-13.3054
chr17	39846650	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	84561552	84561574	SINE	B3	B2	chr17B384561545	NonProperStrand	1	1	-inf
chr16	33385697	33385787	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	chr13	44869574	44869638	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.0173
chr3	131212277	131212390	LINE	Lx5	L1	chr3Lx5131211718	NonProperStrand	4	chr3	131216035	131216080	SINE	PB1D10	Alu	chr3PB1D10131216000	NonProperStrand	2	2	-inf
chr14	122203788	122203859	SINE	B3	B2	chr14B3122203763	ProperStrand	9	chr8	25798967	25799024	protein_coding	Adam3	intron	ENSMUSG00000031553	NonProperStrand	22	1	-18.0397
chr15	103213167	103213208	SINE	PB1D9	Alu	chr15PB1D9103213120	ProperStrand	3	chr15	103213211	103239741	Unknown	YREP_Mm	Unknown	chr15YREP_Mm103213134	NonProperStrand	1	1	-inf
chr5	105812009	105812063	LINE	L1Md_F2	L1	chr5L1Md_F2105811820	NonProperStrand	19	chr17	39843005	39843064	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	1	-7.6780
chr1	17712566	17724522	lincRNA	Gm16070	intron	ENSMUSG00000085125	NonProperStrand	4	chr5	118684584	118684687	protein_coding	Rnft2	intron	ENSMUSG00000032850	NonProperStrand	136	1	-16.0670
chr1	150732730	150732820	LINE	Lx4B	L1	chr1Lx4B150732587	NonProperStrand	2	chr1	172177340	172177440	protein_coding	Sh2d1b2	intron	ENSMUSG00000073494	ProperStrand	22	1	-21.6660
chr6	88893169	88893401	LINE	L1M5	L1	chr6L1M588893256	NonProperStrand	14	chr6	3201505	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-5.6737
chr19	10629291	10629509	protein_coding-noncoding	Tmem216	utr3	ENSMUSG00000024667	NonProperStrand	11	chr19	10629162	10629784	protein_coding	Tmem216	utr5	ENSMUSG00000024667	NonProperStrand	60	10	-inf
chr11	4590455	4590518	LTR	RLTR12A	ERVK	chr11RLTR12A4590368	ProperStrand	1	chr8	48494168	48494197	lincRNA	4930448N21Rik	intron	ENSMUSG00000086634	ProperStrand	141	1	-inf
chr5	146261078	146261104	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	5136911	5138937	protein_coding	Pacs1	exon	ENSMUSG00000024855	ProperStrand	45	1	-5.6243
chr13	64261129	64261172	LINE	L1MC3	L1	chr13L1MC364261116	NonProperStrand	1	chr5	142477905	142477957	protein_coding	Sdk1	intron	ENSMUSG00000039683	NonProperStrand	86	1	-inf
chr9	65750262	65750338	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	chr15	79799617	79799703	protein_coding	Cbx7	intron	ENSMUSG00000053411	ProperStrand	55	1	-11.5211
chr14	77849990	77850031	protein_coding	Enox1	intron	ENSMUSG00000022012	NonProperStrand	14	chr9	123461890	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr8	34917635	34917661	protein_coding	Rbpms	intron	ENSMUSG00000031586	ProperStrand	74	chr3	94562318	94562378	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-11.5674
chr14	27699471	27699565	protein_coding	Dnahc12	intron	ENSMUSG00000021879	ProperStrand	39	chr13	64366628	64366871	protein_coding	Cdc14b	intron	ENSMUSG00000033102	ProperStrand	27	1	-14.5128
chr3	152369496	152369586	SINE	B3	B2	chr3B3152369387	NonProperStrand	2	chr2	20662003	20709413	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	2	-inf
chr2	31478769	31478846	LINE	Lx8	L1	chr2Lx831478740	NonProperStrand	3	chr1	78418952	78418982	protein_coding	Farsb	intron	ENSMUSG00000026245	NonProperStrand	3	2	-20.2273
chr7	27305464	27306099	LINE	MusHAL1	L1	chr7MusHAL127304234	NonProperStrand	14	chrX	87238369	87238411	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	1	-12.4435
chr7	27750647	27750737	LTR	ORR1B1-int	MaLR	chr7ORR1B1-int27750634	ProperStrand	1	chr7	27750541	27750641	LTR	ORR1B1	MaLR	chr7ORR1B127750316	ProperStrand	1	1	-inf
chr8	87748326	87748426	LINE	L1M2	L1	chr8L1M287748098	ProperStrand	4	chr17	32818808	32818898	LTR	RMER4B	ERVK	chr17RMER4B32818822	ProperStrand	3	3	-inf
chrX	76128865	76128906	LINE	Lx7	L1	chrXLx776128816	NonProperStrand	6	chr17	39846816	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.1926
chr9	40804652	40804686	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr16	56116161	56116225	protein_coding	Senp7	intron	ENSMUSG00000052917	NonProperStrand	16	1	-10.1137
chr11	120809517	120809591	LTR	BGLII_A	ERVK	chr11BGLII_A120809156	NonProperStrand	13	chr15	98498062	98498078	protein_coding	Rnd1	intron	ENSMUSG00000054855	ProperStrand	1	1	-inf
chr6	4754473	4754566	LINE	L1MB2	L1	chr6L1MB24754431	ProperStrand	6	chr6	4754586	4754724	LINE	Lx2	L1	chr6Lx24754613	ProperStrand	26	3	-inf
chr13	47932023	47932039	LTR	ORR1E	MaLR	chr13ORR1E47932026	NonProperStrand	6	chr17	39847440	39847738	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-5.2646
chr15	36600609	36600876	SINE	B1_Mus1	Alu	chr15B1_Mus136600585	ProperStrand	16	chr9	75174193	75176555	protein_coding	Gnb5	intron	ENSMUSG00000032192	ProperStrand	22	1	-16.7826
chr4	11164501	11164565	protein_coding	Ints8	intron	ENSMUSG00000040738	NonProperStrand	55	chr4	116886702	116886731	protein_coding	Gm1661	intron	ENSMUSG00000060268	NonProperStrand	9	1	-16.0973
chr5	24175453	24175553	LTR	MLT1A0	MaLR	chr5MLT1A024175434	ProperStrand	1	chr5	24175577	24175667	SINE	B2_Mm2	B2	chr5B2_Mm224175595	NonProperStrand	1	1	-inf
chr17	70963679	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr7	112899031	112899095	protein_coding	Tpp1	intron	ENSMUSG00000030894	NonProperStrand	15	1	-8.9997
chr6	72875097	72875190	SINE	B3	B2	chr6B372875014	ProperStrand	1	chr9	64476804	64476826	protein_coding	Megf11	intron	ENSMUSG00000036466	NonProperStrand	40	1	-inf
chr11	60843536	60843580	protein_coding	Kcnj12	intron	ENSMUSG00000042529	NonProperStrand	21	chr6	72806961	72807055	protein_coding	Kcmf1	intron	ENSMUSG00000055239	NonProperStrand	5	1	-19.1421
chr8	120509490	120509590	LTR	ORR1D1-int	MaLR	chr8ORR1D1-int120509464	NonProperStrand	9	chr8	120509396	120509486	LTR	ORR1D1	MaLR	chr8ORR1D1120509131	NonProperStrand	7	7	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	16506400	16508124	Simple_repeat	(TGGA)n	Simple_repeat	chr11(TGGA)n16506316	NonProperStrand	1	1	-inf
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	95975863	95975947	SINE	B3	B2	chr11B395975802	NonProperStrand	1	1	-inf
chr6	3201470	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	86434646	86434666	protein_coding	Abhd2	intron	ENSMUSG00000039202	NonProperStrand	5	1	-7.8442
chr12	111963315	111966980	LINE	Lx5	L1	chr12Lx5111966811	ProperStrand	2	chr17	39847326	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chrX	128867038	128867088	SINE	B3	B2	chrXB3128867035	NonProperStrand	1	chr12	13237288	13237739	protein_coding	Ddx1	intron	ENSMUSG00000037149	ProperStrand	27	1	-inf
chr10	88437439	88439139	protein_coding	Ano4	intron	ENSMUSG00000035189	NonProperStrand	42	chr7	126848430	126848447	protein_coding	Acsm4	exon	ENSMUSG00000047026	NonProperStrand	30	1	-14.1475
chr5	45010282	45010372	protein_coding	Ldb2	intron	ENSMUSG00000039706	ProperStrand	20	chr2	76385670	76385770	protein_coding	Osbpl6	intron	ENSMUSG00000042359	ProperStrand	35	1	-15.3476
chr19	33812735	33812835	protein_coding	Lipo1	intron	ENSMUSG00000024766	NonProperStrand	4	chr8	101777976	101778066	protein_coding	Cdh8	intron	ENSMUSG00000036510	NonProperStrand	13	1	-inf
chr10	54741266	54741356	LINE	L1Md_F2	L1	chr10L1Md_F254735229	NonProperStrand	1	chr10	54741549	54741649	LINE	L1VL4	L1	chr10L1VL454741575	NonProperStrand	1	1	-inf
chr3	74352661	74352761	LINE	L1_Mur2	L1	chr3L1_Mur274352180	ProperStrand	1	chr3	74352943	74353033	LINE	Lx2B	L1	chr3Lx2B74352944	NonProperStrand	1	1	-inf
chr1	93500273	93500363	LTR	RMER17C	ERVK	chr1RMER17C93500149	NonProperStrand	1	chr3	52867609	52867709	protein_coding	Lhfp	intron	ENSMUSG00000048332	ProperStrand	12	1	-inf
chr11	53292292	53300154	Other	RMER1A	Other	chr11RMER1A53299501	ProperStrand	9	chr11	53300153	53300323	Other	RMER1A	Other	chr11RMER1A53299639	ProperStrand	43	9	-inf
chr7	46502474	46502527	LINE	L1_Mur2	L1	chr7L1_Mur246502173	ProperStrand	2	chr7	46502119	46502156	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n46502102	NonProperStrand	1	1	-inf
chr13	66952651	66952751	Unknown	MurSatRep1	Unknown	chr13MurSatRep166952498	ProperStrand	1	chr13	66952776	66952866	protein_coding	Gm17449	exon	ENSMUSG00000074840	ProperStrand	1	1	-inf
chr17	56093557	56093657	protein_coding	Ebi3	intron	ENSMUSG00000003206	ProperStrand	13	chr17	56082343	56093539	protein_coding	Zfp119b	intron	ENSMUSG00000062101	NonProperStrand	8	2	-inf
chr13	97190552	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	153295764	153295798	protein_coding	8430427H17Rik	intron	ENSMUSG00000061411	NonProperStrand	56	1	-5.2564
chrX	7810638	7812288	LINE	Lx7	L1	chrXLx77810438	ProperStrand	4	chrX	7812285	7812490	SINE	B1_Mur4	Alu	chrXB1_Mur47812246	NonProperStrand	4	4	-inf
chr11	97628606	97628696	SINE	B1_Mus1	Alu	chr11B1_Mus197628577	NonProperStrand	2	chr11	97628439	97628539	SINE	B1_Mus2	Alu	chr11B1_Mus297628394	ProperStrand	3	2	-inf
chr11	63312491	63312592	LTR	ORR1B1	MaLR	chr11ORR1B163312224	NonProperStrand	3	chr17	30282235	30282325	protein_coding	Zfand3	intron	ENSMUSG00000044477	NonProperStrand	157	3	-inf
chr16	17222212	17222246	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	11	chr17	39843508	39843532	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-5.7931
chr8	72741840	72741873	SINE	B1_Mur1	Alu	chr8B1_Mur172741826	ProperStrand	1	chr8	72744478	72744540	protein_coding	Armc6	utr3	ENSMUSG00000002343	NonProperStrand	20	1	-inf
chr17	39846100	39846173	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr13	21750382	21750445	protein_coding	Olfr1361	exon	ENSMUSG00000049737	ProperStrand	6	1	-6.3814
chr17	39847339	39848078	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	149120028	149120050	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	91	-8.9886
chrX	103958715	103958805	LINE	Lx3A	L1	chrXLx3A103958688	ProperStrand	7	chrX	103958616	103958716	LINE	Lx7	L1	chrXLx7103957980	ProperStrand	9	1	-20.6217
chr6	3201509	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr1	136589049	136589115	SINE	B3A	B2	chr1B3A136589058	NonProperStrand	2	1	-10.1342
chr6	57943828	57943918	LINE	Lx3_Mus	L1	chr6Lx3_Mus57943758	ProperStrand	1	chr14	18401013	18401115	LTR	MTEb	MaLR	chr14MTEb18401007	ProperStrand	1	1	-inf
chr5	128386218	128386282	protein_coding	Tmem132d	intron	ENSMUSG00000034310	ProperStrand	110	chr4	41116423	41116648	protein_coding	Ube2r2	intron	ENSMUSG00000036241	NonProperStrand	66	1	-10.6128
chr4	146972092	146972192	LTR	MurERV4-int	ERVK	chr4MurERV4-int146971415	NonProperStrand	4	chr4	145670732	145670822	antisense	1700095A21Rik	.	ENSMUSG00000086046	ProperStrand	12	4	-inf
chrX	36798400	36798459	LINE	L1Md_F2	L1	chrXL1Md_F236792266	NonProperStrand	41	chr13	97190562	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8678
chr12	84053369	84053387	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	72	chr9	40802470	40802586	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-7.0766
chr6	42062809	42062909	LINE	L1_Mus2	L1	chr6L1_Mus242062602	NonProperStrand	1	chr6	42062500	42062590	LTR	RLTR13D3	ERVK	chr6RLTR13D342062417	ProperStrand	1	1	-inf
chr11	12300608	12300645	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr13	46712927	46712978	protein_coding	Cap2	intron	ENSMUSG00000021373	NonProperStrand	63	1	-8.9489
chr17	39847678	39847711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	179192499	179192581	protein_coding	Cdh4	intron	ENSMUSG00000000305	NonProperStrand	11	2	-3.4077
chr3	144520385	144520465	LINE	L1_Mus1	L1	chr3L1_Mus1144519097	ProperStrand	12	chr3	144569281	144569356	LINE	MusHAL1	L1	chr3MusHAL1144569201	ProperStrand	8	1	-19.5831
chr6	58011424	58011514	LTR	IAPEY2_LTR	ERVK	chr6IAPEY2_LTR58011215	ProperStrand	1	chr6	58011693	58011793	LTR	IAPEY3-int	ERVK	chr6IAPEY3-int58011545	ProperStrand	1	1	-inf
chr15	72923683	72923783	protein_coding-noncoding	Chrac1	utr5	ENSMUSG00000068391	NonProperStrand	4	chr15	72922123	72922213	protein_coding	Chrac1	intron	ENSMUSG00000068391	NonProperStrand	9	4	-inf
chr19	7021795	7022105	protein_coding	Bad	intron	ENSMUSG00000024959	NonProperStrand	24	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.7998
chr14	100201165	100201226	LINE	L1_Mur3	L1	chr14L1_Mur3100199352	NonProperStrand	6	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.1685
chr17	39847181	39847335	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	23698131	23698453	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	ProperStrand	11	2	-4.9635
chr4	109784638	109784688	LTR	MTEa	MaLR	chr4MTEa109784448	NonProperStrand	1	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr11	12462839	12462936	LTR	IAPEz-int	ERVK	chr11IAPEz-int12462249	NonProperStrand	29	chr12	76567562	76567591	protein_coding	Ppp2r5e	intron	ENSMUSG00000021051	NonProperStrand	25	1	-15.2720
chr10	83384347	83384407	LTR	RLTR17	ERVK	chr10RLTR1783384284	NonProperStrand	11	chr9	40803581	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-10.8918
chr14	27155404	27155446	LTR	MT2C_Mm	ERVL	chr14MT2C_Mm27155085	NonProperStrand	2	chr14	27154324	27154365	LTR	RodERV21-int	ERV1	chr14RodERV21-int27152986	ProperStrand	3	1	-20.8297
chr15	99647244	99647357	protein_coding	Lima1	intron	ENSMUSG00000023022	ProperStrand	62	chr15	78525178	78525361	protein_coding	Elfn2	intron	ENSMUSG00000043460	NonProperStrand	4	1	-17.8738
chr17	39847611	39847655	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	91604206	91604273	SINE	B2_Mm1t	B2	chr8B2_Mm1t91604099	NonProperStrand	3	1	-4.3512
chr12	64391097	64391187	LTR	IAPEz-int	ERVK	chr12IAPEz-int64391085	ProperStrand	1	chr12	64391432	64391532	LTR	IAPEz-int	ERVK	chr12IAPEz-int64391404	ProperStrand	1	1	-inf
chr1	54990476	54990548	LTR	ERVL-E-int	ERVL	chr1ERVL-E-int54990177	NonProperStrand	1	chr1	54999628	54999661	LTR	RLTR20D	ERVK	chr1RLTR20D54999306	NonProperStrand	1	1	-inf
chr17	39847918	39847955	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	7391766	7391793	LTR	RLTR10E	ERVK	chr4RLTR10E7391594	NonProperStrand	2	1	-5.4040
chr16	23110802	23110927	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr14	20368054	20368071	protein_coding	Gm2244	intron	ENSMUSG00000092036	NonProperStrand	15	1	-12.7297
chr5	108433719	108433819	SINE	B4A	B4	chr5B4A108433615	NonProperStrand	1	chr5	108433864	108433954	SINE	RSINE1	B4	chr5RSINE1108433830	NonProperStrand	1	1	-inf
chr5	110568306	110568366	protein_coding	Chfr	intron	ENSMUSG00000014668	ProperStrand	10	chr5	110559735	110559779	protein_coding	Zfp605	intron	ENSMUSG00000023284	ProperStrand	5	1	-21.4193
chr4	142193195	142193225	Simple_repeat	(TTTTG)n	Simple_repeat	chr4(TTTTG)n142193184	NonProperStrand	1	chr16	35981725	35981765	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	1	-inf
chr6	92452463	92452580	protein_coding	Prickle2	intron	ENSMUSG00000030020	ProperStrand	72	chr6	134559828	134559869	protein_coding	Mansc1	utr3	ENSMUSG00000032718	ProperStrand	19	1	-13.9877
chr6	71406485	71406583	LINE	L1MDa	L1	chr6L1MDa71406063	NonProperStrand	1	chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	1	-inf
chr13	75035649	75035739	DNA	URR1A	MER1_type	chr13URR1A75035641	ProperStrand	1	chr13	75035405	75035505	LINE	L1_Rod	L1	chr13L1_Rod75035074	ProperStrand	1	1	-inf
chr2	90395157	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr5	134631936	134631953	protein_coding	Wbscr16	intron	ENSMUSG00000061979	NonProperStrand	1	1	-inf
chr1	33156956	33157046	SINE	B4A	B4	chr1B4A33156775	ProperStrand	1	chr1	33157266	33157366	Simple_repeat	(TAGA)n	Simple_repeat	chr1(TAGA)n33157178	ProperStrand	1	1	-inf
chr12	78350926	78350986	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	114852010	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-3.3151
chr10	62807682	62807722	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr15	12439087	12439158	protein_coding	Pdzd2	intron	ENSMUSG00000022197	ProperStrand	76	1	-8.8727
chr4	108279059	108279102	lincRNA	Gm12743	intron	ENSMUSG00000084968	ProperStrand	10	chr4	108297281	108297379	protein_coding	AL626783.1	utr3	ENSMUSG00000090599	ProperStrand	9	1	-20.1232
chr19	5798661	5798761	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr8	106762034	106762124	protein_coding	Tk2	intron	ENSMUSG00000035824	NonProperStrand	17	2	-11.2270
chr16	17222212	17222240	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	11	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.0129
chr1	136364891	136364963	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr2	52122556	52122590	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-8.7256
chr4	152222357	152222471	LINE	L1_Mm	L1	chr4L1_Mm152222034	ProperStrand	2	chr2	90395145	90395172	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	2	-inf
chr2	5462621	5462711	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr11	95632524	95632624	protein_coding	Zfp652	utr3	ENSMUSG00000075595	ProperStrand	82	1	-3.9561
chr5	134426985	134427043	LTR	IAPEz-int	ERVK	chr5IAPEz-int134425711	ProperStrand	17	chr5	134425398	134425464	LTR	IAPLTR1_Mm	ERVK	chr5IAPLTR1_Mm134425311	ProperStrand	1	1	-inf
chr14	77531275	77531375	LTR	ORR1D1	MaLR	chr14ORR1D177531239	NonProperStrand	3	chr14	77531118	77531208	SINE	B1_Mur4	Alu	chr14B1_Mur477531090	NonProperStrand	3	3	-inf
chr1	72260304	72260341	LINE	L2a	L2	chr1L2a72260288	NonProperStrand	1	chr1	72259811	72259863	SINE	B2_Mm2	B2	chr1B2_Mm272259679	NonProperStrand	2	1	-inf
chrX	128252083	128252173	LINE	Lx2B	L1	chrXLx2B128251938	NonProperStrand	1	chrX	109029648	109029748	LINE	Lx8	L1	chrXLx8109029398	NonProperStrand	1	1	-inf
chr19	5611088	5611177	LTR	MT2A	ERVL	chr19MT2A5611073	NonProperStrand	1	chr19	5610703	5610767	SINE	B1_Mur4	Alu	chr19B1_Mur45610720	ProperStrand	1	1	-inf
chr9	123461905	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	135147606	135147656	protein_coding	Trim72	intron	ENSMUSG00000042828	ProperStrand	2	1	-8.0983
chr5	24103882	24103980	protein_coding	Smarcd3	intron	ENSMUSG00000028949	NonProperStrand	3	chr17	50195520	50195538	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	12	1	-21.1865
chr4	70396887	70396942	LINE	Lx9	L1	chr4Lx970395868	ProperStrand	5	chr17	39846006	39846071	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-6.7797
chr7	80494228	80494508	lincRNA	A730056A06Rik	intron	ENSMUSG00000092033	ProperStrand	89	chrX	80802743	80802761	protein_coding	Dmd	intron	ENSMUSG00000045103	ProperStrand	47	1	-11.7224
chr14	21324247	21324315	protein_coding	Ppp3cb	intron	ENSMUSG00000021816	NonProperStrand	22	chr5	73322840	73322904	protein_coding	Slain2	intron	ENSMUSG00000036087	ProperStrand	24	1	-15.9317
chr1	162697992	162698130	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	chr2	146299474	146299493	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	NonProperStrand	19	1	-12.2770
chr17	39847077	39847383	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	97190540	97190632	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	115	-13.5561
chr3	14565748	14565764	protein_coding	Lrrcc1	exon	ENSMUSG00000027550	ProperStrand	7	chr1	5100290	5100336	protein_coding	Atp6v1h	intron	ENSMUSG00000033793	ProperStrand	26	1	-18.2314
chr17	17006270	17006367	LINE	Lx2	L1	chr17Lx217006139	ProperStrand	2	chr9	110940002	110940056	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-18.4181
chr9	106436571	106436624	LTR	ORR1C2	MaLR	chr9ORR1C2106436464	ProperStrand	1	chr9	123462082	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	72362475	72362537	SINE	B3	B2	chr9B372362346	NonProperStrand	1	chr9	72362123	72362195	SINE	MIR	MIR	chr9MIR72362112	ProperStrand	1	1	-inf
chr2	103771814	103772728	DNA	MER58B	MER1_type	chr2MER58B103772513	NonProperStrand	2	chr13	97190561	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-inf
chr13	34190295	34190313	LTR	RMER16	ERVK	chr13RMER1634190057	NonProperStrand	1	chr17	39847736	39847799	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846588	39846660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	118107633	118107690	protein_coding	Cdc20	intron	ENSMUSG00000006398	ProperStrand	4	1	-3.6552
chr9	47849280	47849309	LINE	L1MEe	L1	chr9L1MEe47849270	ProperStrand	1	chr9	47848966	47849093	LINE	MusHAL1	L1	chr9MusHAL147848906	ProperStrand	1	1	-inf
chr3	37415240	37415340	protein_coding	Spata5	intron	ENSMUSG00000027722	NonProperStrand	4	chr3	37324623	37324713	protein_coding	Spata5	intron	ENSMUSG00000027722	ProperStrand	28	1	-20.3032
chr5	89707811	89707827	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr6	52189839	52189858	protein_coding	Hoxa10	intron	ENSMUSG00000000938	NonProperStrand	4	1	-18.8669
chr6	29774533	29774594	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	ProperStrand	78	chr9	64176670	64176760	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-8.4187
chr6	3201467	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	21394252	21394872	protein_coding	Yipf2	exon	ENSMUSG00000032182	NonProperStrand	15	1	-5.5348
chr7	34245085	34245148	LTR	MurERV4-int	ERVK	chr7MurERV4-int34244910	NonProperStrand	1	chr7	34245225	34245283	LTR	RMER16-int	ERVK	chr7RMER16-int34245155	NonProperStrand	1	1	-inf
chr17	86018602	86018699	lincRNA	Six3os1	exon	ENSMUSG00000093460	ProperStrand	25	chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-11.0732
chr10	8756667	8756761	LINE	L1_Mus1	L1	chr10L1_Mus18753641	NonProperStrand	3	chr17	39847284	39847333	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr2	30826949	30827049	SINE	B1_Mm	Alu	chr2B1_Mm30826955	ProperStrand	3	chr2	30827071	30827161	SINE	PB1D9	Alu	chr2PB1D930827097	ProperStrand	2	2	-inf
chr13	88351367	88351386	SINE	B1_Mus2	Alu	chr13B1_Mus288351361	ProperStrand	1	chr10	93496584	93496601	protein_coding	Vezt	intron	ENSMUSG00000036099	NonProperStrand	24	1	-inf
chr13	115528510	115528585	LINE	L1_Mus3	L1	chr13L1_Mus3115528036	NonProperStrand	1	chr15	80078088	80078396	protein_coding	Smcr7l	exon	ENSMUSG00000022412	NonProperStrand	429	1	-inf
chr14	52150327	52150417	protein_coding	Gm7247	intron	ENSMUSG00000068399	ProperStrand	12	chr2	30929347	30929447	protein_coding	Fnbp1	intron	ENSMUSG00000075415	NonProperStrand	32	1	-16.5870
chr17	39847674	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	91641255	91641276	protein_coding	Gart	intron	ENSMUSG00000022962	NonProperStrand	2	1	-5.4040
chr18	33795198	33795255	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	29	chr1	161035399	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	1	-13.9033
chr7	128447911	128447967	LINE	L2a	L2	chr7L2a128447864	ProperStrand	1	chr8	71790923	71790983	SINE	B1_Mus1	Alu	chr8B1_Mus171790838	ProperStrand	1	1	-inf
chr12	69725680	69725740	LTR	IAPEz-int	ERVK	chr12IAPEz-int69723126	NonProperStrand	12	chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-4.3503
chr17	39847277	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	31844386	31844409	SINE	B2_Mm2	B2	chr13B2_Mm231844278	NonProperStrand	2	1	-6.5615
chr7	100117886	100117936	LTR	MERVL-int	ERVL	chr7MERVL-int100117376	ProperStrand	7	chr13	95328205	95328303	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	55	1	-16.5888
chr1	167340515	167340538	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	chrX	156442454	156442571	protein_coding	Map3k15	intron	ENSMUSG00000031303	NonProperStrand	3	1	-14.9376
chr4	75086501	75086601	LTR	ORR1B1-int	MaLR	chr4ORR1B1-int75086518	NonProperStrand	1	chr4	75086396	75086486	LTR	ORR1B1	MaLR	chr4ORR1B175086094	NonProperStrand	1	1	-inf
chr17	39847276	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	53891799	53891815	protein_coding	Sergef	intron	ENSMUSG00000030839	ProperStrand	4	1	-4.8204
chr8	28052086	28052186	LINE	L1_Mus1	L1	chr8L1_Mus128051906	ProperStrand	1	chr8	28051760	28051850	LINE	L1_Rod	L1	chr8L1_Rod28051370	ProperStrand	1	1	-inf
chr13	108222517	108222617	LINE	L1Md_F2	L1	chr13L1Md_F2108222393	ProperStrand	3	chr19	43891497	43891587	protein_coding	Abcc2	intron	ENSMUSG00000025194	NonProperStrand	51	1	-18.9239
chr7	132985192	132985269	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	chr5	118702877	118702944	protein_coding	2410131K14Rik	intron	ENSMUSG00000032840	ProperStrand	127	1	-7.3574
chr13	91016753	91016802	LINE	L1_Mur3	L1	chr13L1_Mur391015673	ProperStrand	1	chr13	91018047	91018093	LINE	L1_Mur3	L1	chr13L1_Mur391017005	ProperStrand	1	1	-inf
chr16	82809827	82809861	LTR	MTD	MaLR	chr16MTD82809797	NonProperStrand	1	chr17	39848021	39848064	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	29774374	29774435	protein_coding	Nom1	intron	ENSMUSG00000001569	ProperStrand	79	chr15	83149723	83149797	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-9.7834
chr10	121395441	121395488	protein_coding	Srgap1	intron	ENSMUSG00000020121	ProperStrand	69	chr4	138844635	138844703	protein_coding	Capzb	intron	ENSMUSG00000028745	NonProperStrand	22	1	-13.7763
chr5	89799842	89799932	LINE	Lx7	L1	chr5Lx789799797	NonProperStrand	2	chr5	89799693	89799793	SINE	B1_Mur3	Alu	chr5B1_Mur389799628	ProperStrand	2	2	-inf
chr7	6573524	6573624	LTR	IAPEy-int	ERVK	chr7IAPEy-int6569393	NonProperStrand	5	chr7	6648518	6648608	protein_coding	Zim1	intron	ENSMUSG00000002266	ProperStrand	65	2	-inf
chr18	77038947	77038968	LINE	Lx	L1	chr18Lx77038014	ProperStrand	4	chr18	77097275	77097387	protein_coding	Skor2	utr5	ENSMUSG00000091519	ProperStrand	55	1	-17.8071
chr3	46168418	46168443	LINE	L1_Mur2	L1	chr3L1_Mur246167310	ProperStrand	1	chr7	100498379	100498792	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int100495866	ProperStrand	26	1	-inf
chr6	79294817	79294917	LINE	L1Md_F2	L1	chr6L1Md_F279292622	NonProperStrand	1	chr6	79295298	79295388	LINE	L1Md_F2	L1	chr6L1Md_F279295054	NonProperStrand	1	1	-inf
chr17	39846822	39846978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	69397720	69400797	protein_coding	Trp53	intron	ENSMUSG00000059552	NonProperStrand	12	2	-3.1058
chr17	39846450	39846497	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	118230927	118231021	LTR	ORR1C2-int	MaLR	chr7ORR1C2-int118230844	ProperStrand	1	1	-inf
chr11	62604512	62604584	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr11	69073524	69073563	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	1	-14.3136
chr17	46202940	46204669	LINE	L1M4c	L1	chr17L1M4c46202934	NonProperStrand	3	chr17	46202795	46202885	SINE	B4A	B4	chr17B4A46202709	NonProperStrand	4	2	-inf
chr17	39847840	39847899	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	94279797	94279846	LTR	MLT1H	MaLR	chr8MLT1H94279780	ProperStrand	1	1	-inf
chr9	7435950	7436040	LINE	L1_Mus1	L1	chr9L1_Mus17431886	ProperStrand	1	chr9	7496577	7496677	LTR	MMETn-int	ERVK	chr9MMETn-int7494794	NonProperStrand	2	1	-inf
chr15	100067162	100067199	protein_coding	Atf1	intron	ENSMUSG00000023027	ProperStrand	30	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.3498
chrX	38561626	38561648	LINE	L1_Mus1	L1	chrXL1_Mus138561414	NonProperStrand	1	chr5	115555091	115555167	pseudogene	Gm13826	.	ENSMUSG00000072692	NonProperStrand	36	1	-inf
chr18	37132375	37132416	protein_coding	Pcdha4	intron	ENSMUSG00000007440	ProperStrand	8	chr11	61152547	61152603	protein_coding	Slc47a2	intron	ENSMUSG00000069855	ProperStrand	19	1	-18.4261
chr8	18717331	18717424	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-6.6907
chr16	33047588	33047690	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	chr3	152230809	152230863	protein_coding	Ak5	intron	ENSMUSG00000039058	NonProperStrand	72	1	-13.3502
chr4	127095237	127095363	SINE	B4A	B4	chr4B4A127095247	NonProperStrand	1	chr9	123462151	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	69670744	69670972	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr5	139771771	139771803	protein_coding	Adap1	intron	ENSMUSG00000056413	ProperStrand	64	1	-8.8874
chr2	146272095	146272114	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	ProperStrand	101	chr2	33216934	33217076	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-7.1795
chr6	128335195	128335295	antisense	Gm15862	.	ENSMUSG00000085739	NonProperStrand	3	chr6	128334909	128334999	protein_coding	4933413G19Rik	exon	ENSMUSG00000079304	ProperStrand	1	1	-inf
chrX	100429721	100429760	protein_coding	4930519F16Rik	intron	ENSMUSG00000031325	ProperStrand	18	chr7	121983899	121983993	protein_coding	Insc	intron	ENSMUSG00000048782	ProperStrand	5	1	-19.9608
chr19	9511578	9511668	LINE	Lx2B	L1	chr19Lx2B9511564	NonProperStrand	1	chr19	9511923	9512023	LTR	RMER13B	ERVK	chr19RMER13B9511710	NonProperStrand	1	1	-inf
chr13	3562011	3564554	protein_coding	Gdi2	intron	ENSMUSG00000021218	ProperStrand	39	chr13	99506555	99506632	protein_coding	Fcho2	intron	ENSMUSG00000041685	ProperStrand	31	1	-14.2301
chr13	106929514	106929604	LTR	IAPEz-int	ERVK	chr13IAPEz-int106929231	ProperStrand	1	chr13	106929871	106929971	LTR	IAPEz-int	ERVK	chr13IAPEz-int106929734	ProperStrand	1	1	-inf
chr12	108803056	108803146	SINE	ID4_	ID	chr12ID4_108803058	NonProperStrand	1	chr12	108803166	108803266	SINE	PB1	Alu	chr12PB1108803157	NonProperStrand	1	1	-inf
chr10	23781846	23781946	LINE	L1_Mus3	L1	chr10L1_Mus323781289	NonProperStrand	5	chr10	59225530	59225620	protein_coding	Micu1	intron	ENSMUSG00000020111	ProperStrand	11	1	-21.8628
chr9	55149823	55162994	protein_coding	Nrg4	intron	ENSMUSG00000032311	NonProperStrand	23	chr9	55206979	55207086	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	1	-13.4917
chr15	53214886	53214960	LINE	L1_Mur3	L1	chr15L1_Mur353214597	ProperStrand	3	chr11	62399996	62400080	protein_coding	Trpv2	intron	ENSMUSG00000018507	NonProperStrand	22	2	-inf
chr5	146261022	146261068	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	34952246	34952311	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	1	-3.7454
chr15	76651843	76651943	LINE	L2	L2	chr15L276651831	NonProperStrand	4	chr15	76651940	76652030	SINE	B3	B2	chr15B376651922	ProperStrand	4	4	-inf
chr2	173237759	173237859	LTR	ORR1D2	MaLR	chr2ORR1D2173237487	NonProperStrand	2	chr2	173237893	173237983	SINE	B4A	B4	chr2B4A173237836	ProperStrand	1	1	-inf
chr9	118674949	118675011	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr1	72711779	72712193	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	61	1	-5.9383
chr7	34205864	34207634	LINE	L1Md_F2	L1	chr7L1Md_F234202552	ProperStrand	46	chr7	34207649	34207740	LINE	L1Md_F2	L1	chr7L1Md_F234207113	ProperStrand	22	10	-inf
chr1	122357176	122357225	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr15	80078500	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-5.0276
chr11	46307144	46307202	LINE	L1Md_A	L1	chr11L1Md_A46306229	ProperStrand	6	chr11	46294612	46294702	protein_coding	Havcr2	utr3	ENSMUSG00000020399	NonProperStrand	13	1	-inf
chr17	35836703	35838064	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.1852
chr3	125915264	125915308	LINE	L1Md_F3	L1	chr3L1Md_F3125915261	NonProperStrand	1	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr3	96558902	96559086	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	chr13	9106860	9106942	protein_coding	Larp4b	intron	ENSMUSG00000033499	ProperStrand	85	1	-10.7945
chr17	71641589	71641660	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	chr16	22418230	22418315	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	1	-7.4369
chr16	35928017	35928107	protein_coding	Dtx3l	utr3	ENSMUSG00000049502	NonProperStrand	5	chr18	35871480	35871580	protein_coding	1700066B19Rik	intron	ENSMUSG00000073598	NonProperStrand	5	2	-inf
chr13	112578211	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr14	21852634	21852690	protein_coding	Vcl	utr3	ENSMUSG00000021823	ProperStrand	63	1	-4.1141
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	24	chr9	110742378	110742398	protein_coding	Prss45	intron	ENSMUSG00000047257	ProperStrand	1	1	-inf
chr2	22744862	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	8385965	8385981	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-8.7340
chr17	39847257	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	106483030	106483179	LTR	RMER20B	ERVK	chr9RMER20B106482989	NonProperStrand	1	1	-inf
chr1	152881660	152881706	LINE	L1_Mur2	L1	chr1L1_Mur2152881543	NonProperStrand	2	chr17	39846415	39846474	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39848513	39848622	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	53704371	53704417	protein_coding	Slc22a5	intron	ENSMUSG00000018900	ProperStrand	15	1	-4.1773
chr11	8635351	8635441	LTR	MMETn-int	ERVK	chr11MMETn-int8634961	ProperStrand	6	chr5	53559562	53559625	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	1	-15.0279
chr2	90395146	90395173	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.3417
chr18	40210753	40210844	LTR	RLTR8	ERVK	chr18RLTR840210669	ProperStrand	1	chr13	44869626	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr4	43029300	43029534	SINE	B2_Mm1a	B2	chr4B2_Mm1a43029312	ProperStrand	2	chr3	9520240	9520330	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	2	-inf
chr17	88512830	88512883	LINE	L1M5	L1	chr17L1M588512690	ProperStrand	1	chr17	39847981	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	150288608	150288708	LINE	L1Md_F3	L1	chr2L1Md_F3150285433	NonProperStrand	4	chr9	65829781	65829871	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	ProperStrand	13	1	-inf
chr17	39848598	39848702	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	62159158	62159230	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	2	-4.3034
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr8	122902754	122902894	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-6.4581
chr17	39847082	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	45150135	45150156	protein_coding	Kazald1	intron	ENSMUSG00000025213	ProperStrand	1	1	-inf
chr13	60709947	60709966	protein_coding	Dapk1	intron	ENSMUSG00000021559	ProperStrand	39	chr14	11863250	11863327	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-8.7376
chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	111210470	111210552	SINE	B3A	B2	chr9B3A111210409	NonProperStrand	1	1	-inf
chr7	88328707	88328797	SINE	B1F2	Alu	chr7B1F288328662	NonProperStrand	1	chr7	88328931	88329031	SINE	RSINE1	B4	chr7RSINE188328884	NonProperStrand	1	1	-inf
chr17	39846750	39846818	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	7137306	7137350	Low_complexity	CT-rich	Low_complexity	chr11CT-rich7137289	ProperStrand	1	1	-inf
chr11	72983507	72983523	protein_coding	P2rx5	intron	ENSMUSG00000005950	ProperStrand	20	chr9	123461835	123461963	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr19	49107202	49107292	LINE	Lx3A	L1	chr19Lx3A49107086	NonProperStrand	1	chr19	49107483	49107583	Simple_repeat	(TTTC)n	Simple_repeat	chr19(TTTC)n49107477	ProperStrand	1	1	-inf
chr17	39846952	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	25754468	25754549	SINE	B1_Mur1	Alu	chr7B1_Mur125754404	ProperStrand	4	1	-3.6552
chr10	40258567	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr3	144590613	144590661	protein_coding	AI747448	intron	ENSMUSG00000074195	NonProperStrand	15	1	-8.1311
chr17	90428078	90428097	LINE	L1Md_T	L1	chr17L1Md_T90427871	ProperStrand	1	chr17	39846721	39846862	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	29753577	29764413	LINE	L1_Mur2	L1	chr5L1_Mur229753470	NonProperStrand	2	chr5	29764444	29765519	protein_coding	Nom1	intron	ENSMUSG00000001569	ProperStrand	79	1	-19.2571
chr7	122601064	122601138	LINE	L1MD	L1	chr7L1MD122600965	NonProperStrand	1	chr7	122606291	122606355	LTR	ORR1D2	MaLR	chr7ORR1D2122606207	NonProperStrand	1	1	-inf
chr17	50195524	50195542	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	12	chr13	36158262	36158321	protein_coding	Lyrm4	intron	ENSMUSG00000046573	NonProperStrand	50	1	-15.6789
chr15	16060426	16060516	LINE	L1Md_F2	L1	chr15L1Md_F216059532	ProperStrand	1	chr15	16060651	16060751	LTR	RLTR13D6	ERVK	chr15RLTR13D616060541	ProperStrand	1	1	-inf
chr19	5796792	5796849	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr7	19645989	19646748	protein_coding	Rsph6a	intron	ENSMUSG00000040866	NonProperStrand	14	1	-7.3242
chr8	6694603	6694620	LINE	L1_Mus4	L1	chr8L1_Mus46694428	ProperStrand	1	chr9	123461999	123462060	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	82400373	82400425	LTR	BGLII	ERVK	chr4BGLII82400082	NonProperStrand	1	chr15	73697797	73697820	Simple_repeat	(TAGA)n	Simple_repeat	chr15(TAGA)n73697646	ProperStrand	1	1	-inf
chr17	39847198	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	117215679	117215695	protein_coding	Nup107	intron	ENSMUSG00000052798	ProperStrand	8	1	-3.3803
chr9	123462079	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	26140072	26140089	protein_coding	4932418E24Rik	intron	ENSMUSG00000048038	ProperStrand	3	1	-7.0114
chr3	110317137	110317237	LINE	Lx3_Mus	L1	chr3Lx3_Mus110316546	NonProperStrand	1	chr3	110317292	110317382	LINE	Lx3_Mus	L1	chr3Lx3_Mus110317144	NonProperStrand	1	1	-inf
chrX	123839329	123839433	LINE	L1VL4	L1	chrXL1VL4123837657	NonProperStrand	1	chr12	78351032	78351104	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr2	168213795	168213895	LTR	ORR1B1	MaLR	chr2ORR1B1168213552	NonProperStrand	1	chr2	168213919	168214009	LTR	ORR1D2	MaLR	chr2ORR1D2168213883	ProperStrand	9	1	-inf
chr11	109011650	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	86511803	86511878	protein_coding	Pgf	intron	ENSMUSG00000004791	NonProperStrand	195	1	-3.8329
chr17	80597834	80597888	LINE	Lx	L1	chr17Lx80597432	NonProperStrand	4	chr5	38682369	38682433	protein_coding	Otop1	intron	ENSMUSG00000051596	NonProperStrand	55	2	-20.4199
chr11	107065993	107066083	SINE	B3A	B2	chr11B3A107065997	NonProperStrand	9	chr11	107062752	107065972	Simple_repeat	(TTTC)n	Simple_repeat	chr11(TTTC)n107065665	NonProperStrand	1	1	-inf
chr11	88692523	88692660	protein_coding	Akap1	utr3	ENSMUSG00000018428	ProperStrand	140	chr9	15736962	15736979	protein_coding	Fat3	intron	ENSMUSG00000074505	ProperStrand	10	1	-13.9884
chr2	5012529	5012600	SINE	PB1D10	Alu	chr2PB1D105012501	ProperStrand	1	chr7	111076068	111076149	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-inf
chr4	147094889	147095013	LINE	L1_Mur2	L1	chr4L1_Mur2147094761	ProperStrand	1	chr8	105055646	105056386	SINE	B3	B2	chr8B3105055585	ProperStrand	1	1	-inf
chr11	26957010	26957110	LINE	Lx2	L1	chr11Lx226956898	NonProperStrand	2	chr11	26957211	26957301	SINE	B1_Mus1	Alu	chr11B1_Mus126957158	ProperStrand	2	2	-inf
chr10	81488195	81488285	LINE	L1Md_F2	L1	chr10L1Md_F281486805	ProperStrand	42	chr5	140341257	140341355	LTR	ORR1E	MaLR	chr5ORR1E140341033	ProperStrand	5	1	-18.0510
chr7	29259408	29260397	SINE	B1_Mus2	Alu	chr7B1_Mus229259407	ProperStrand	2	chr16	32680440	32680521	protein_coding	Tnk2	exon	ENSMUSG00000022791	ProperStrand	153	2	-inf
chr7	92514313	92514415	LTR	IAPEz-int	ERVK	chr7IAPEz-int92510473	ProperStrand	1	chr7	92514501	92514591	LTR	IAPLTR1a_Mm	ERVK	chr7IAPLTR1a_Mm92514491	ProperStrand	1	1	-inf
chr17	39847149	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	52337006	52337055	LTR	RMER6-int	ERVK	chr8RMER6-int52336818	ProperStrand	4	1	-4.8204
chr15	57975972	57975990	protein_coding	Wdyhv1	intron	ENSMUSG00000022359	NonProperStrand	10	chr7	111076060	111076148	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-14.8569
chr12	102003636	102003668	LTR	MTC	MaLR	chr12MTC102003430	NonProperStrand	1	chr8	70351926	70352002	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-inf
chr1	118938941	118939031	LINE	L1Md_F2	L1	chr1L1Md_F2118938954	ProperStrand	22	chr1	118939962	118940062	LINE	L1Md_F2	L1	chr1L1Md_F2118939744	NonProperStrand	8	3	-inf
chr5	140762629	140785485	protein_coding	Mad1l1	intron	ENSMUSG00000029554	ProperStrand	144	chr5	140785572	140830043	protein_coding	Snx8	intron	ENSMUSG00000029560	ProperStrand	18	3	-20.1866
chr11	115699232	115699332	protein_coding	Llgl2	intron	ENSMUSG00000020782	NonProperStrand	30	chr7	127683239	127683329	protein_coding	Abca16	intron	ENSMUSG00000051900	NonProperStrand	24	1	-15.2883
chr16	64292184	64292274	SINE	MIR3	MIR	chr16MIR364292167	ProperStrand	1	chr16	64291985	64292085	SINE	MIRm	MIR	chr16MIRm64291973	NonProperStrand	1	1	-inf
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr12	112974698	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	2	-11.9535
chr8	84880394	84880483	protein_coding	Il15	intron	ENSMUSG00000031712	NonProperStrand	64	chr4	45379192	45379250	protein_coding	Dcaf10	intron	ENSMUSG00000035572	NonProperStrand	18	2	-24.5293
chr1	122357166	122357225	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr4	44922729	44922798	protein_coding-noncoding	Zcchc7	utr5	ENSMUSG00000035649	ProperStrand	2	1	-16.3749
chr5	146261162	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	63110468	63110590	protein_coding	Efna5	intron	ENSMUSG00000048915	ProperStrand	104	1	-4.0123
chr11	66570610	66570710	DNA	MER5A1	MER1_type	chr11MER5A166570602	ProperStrand	1	chr11	66570464	66570554	DNA	MER5A	MER1_type	chr11MER5A66570477	NonProperStrand	1	1	-inf
chr17	39847636	39847700	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	33372277	33372351	SINE	B4A	B4	chr5B4A33372096	NonProperStrand	1	1	-inf
chr4	121199854	121199900	LINE	L1Md_F3	L1	chr4L1Md_F3121199420	ProperStrand	8	chr11	33235831	33235917	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-11.5692
chr7	80043472	80043562	LINE	L1_Mus1	L1	chr7L1_Mus180043440	ProperStrand	1	chr7	80031430	80031531	LTR	MTA_Mm	MaLR	chr7MTA_Mm80031252	NonProperStrand	1	1	-inf
chr1	130892150	130892250	DNA	MER2	MER2_type	chr1MER2130891986	ProperStrand	1	chr1	130892420	130892510	SINE	ID_B1	B4	chr1ID_B1130892267	ProperStrand	1	1	-inf
chrX	7873841	7873931	LINE	Lx9	L1	chrXLx97873736	ProperStrand	2	chrX	7873926	7874305	LTR	ORR1A2	MaLR	chrXORR1A27874063	NonProperStrand	2	2	-inf
chr5	29772542	29772641	protein_coding	Nom1	intron	ENSMUSG00000001569	ProperStrand	79	chr2	121449376	121449434	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	1	-10.9160
chr5	33506690	33506740	LINE	Lx8	L1	chr5Lx833506547	NonProperStrand	23	chr2	52884977	52885037	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	2	-18.5619
chr2	106488494	106488519	lincRNA	BB218582	intron	ENSMUSG00000085218	ProperStrand	1	chr7	13030769	13030890	pseudogene	Vmn2r-ps53	.	ENSMUSG00000092583	ProperStrand	40	1	-inf
chr6	23572099	23572199	protein_coding	Cadps2	intron	ENSMUSG00000017978	ProperStrand	17	chr10	5649183	5649273	protein_coding	Esr1	intron	ENSMUSG00000019768	ProperStrand	18	1	-17.0170
chr19	5362397	5362431	LINE	L1M5	L1	chr19L1M55362303	ProperStrand	1	chr2	35710343	35710443	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	1	-inf
chr10	95319201	95319286	LINE	L2b	L2	chr10L2b95319207	ProperStrand	2	chr17	39847495	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr2	152338197	152338297	SINE	B1_Mur2	Alu	chr2B1_Mur2152338163	ProperStrand	10	chr2	152338397	152338487	Simple_repeat	(GAA)n	Simple_repeat	chr2(GAA)n152338380	NonProperStrand	3	3	-inf
chr18	49945416	49945506	LINE	Lx5	L1	chr18Lx549945437	NonProperStrand	2	chr18	49945532	49945632	LTR	ORR1A4	MaLR	chr18ORR1A449945535	NonProperStrand	2	2	-inf
chr17	39847206	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	109117261	109117289	LTR	RLTR19-int	ERVK	chr8RLTR19-int109117175	NonProperStrand	3	1	-5.4882
chr17	39847670	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	45695739	45695804	LTR	MLT1A	MaLR	chr5MLT1A45695753	ProperStrand	1	1	-inf
chr17	33551554	33551644	LINE	L1Md_T	L1	chr17L1Md_T33551281	NonProperStrand	6	chr17	33551210	33551310	LINE	Lx	L1	chr17Lx33550790	NonProperStrand	3	1	-inf
chr17	28040106	28040206	protein_coding-noncoding	Taf11	utr3	ENSMUSG00000024218	NonProperStrand	2	chr17	28039993	28040083	protein_coding	Taf11	intron	ENSMUSG00000024218	NonProperStrand	26	2	-inf
chr9	106215148	106215237	protein_coding	Poc1a	intron	ENSMUSG00000023345	ProperStrand	63	chr9	34867425	34867446	protein_coding	St3gal4	intron	ENSMUSG00000032038	NonProperStrand	2	1	-18.9797
chr16	24984416	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.5690
chr8	71745955	71746096	LINE	Lx5	L1	chr8Lx571745318	NonProperStrand	4	chr13	8767074	8767382	protein_coding	Adarb2	utr3	ENSMUSG00000052551	ProperStrand	25	2	-inf
chr2	30002365	30003350	protein_coding-noncoding	Tbc1d13	utr5	ENSMUSG00000039678	ProperStrand	3	chr2	30002237	30002327	protein_coding	Tbc1d13	exon	ENSMUSG00000039678	ProperStrand	32	1	-19.1201
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr5	124718484	124723144	protein_coding	Mphosph9	intron	ENSMUSG00000038126	NonProperStrand	8	2	-inf
chr15	96593894	96593955	DNA	RCHARR1	MER1_type	chr15RCHARR196593752	ProperStrand	1	chr15	96594269	96594364	LINE	Lx8	L1	chr15Lx896594292	NonProperStrand	3	1	-inf
chr16	52054824	52054907	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	chr13	97190576	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.2609
chr11	98405328	98405428	protein_coding	Ikzf3	intron	ENSMUSG00000018168	ProperStrand	2	chr2	6037023	6037113	protein_coding	5430407P10Rik	intron	ENSMUSG00000045319	NonProperStrand	12	1	-inf
chr17	39843909	39843997	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr1	36343767	36343784	LTR	MTD	MaLR	chr1MTD36343589	NonProperStrand	1	1	-inf
chr17	36855975	36855995	LINE	L1VL2	L1	chr17L1VL236855859	ProperStrand	1	chr17	36854323	36854373	LTR	MuLV-int	ERV1	chr17MuLV-int36854077	NonProperStrand	1	1	-inf
chr5	115490298	115490398	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr6	33885422	33885512	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-4.0389
chr11	69674178	69674268	SINE	B1_Mus2	Alu	chr11B1_Mus269674196	ProperStrand	8	chr11	69674066	69674166	SINE	B2_Mm2	B2	chr11B2_Mm269674053	ProperStrand	1	1	-inf
chr1	16540892	16540908	LINE	Lx8	L1	chr1Lx816540369	NonProperStrand	1	chr1	90211205	90211259	protein_coding	Trpm8	intron	ENSMUSG00000036251	ProperStrand	18	1	-inf
chr2	127604172	127604235	protein_coding	Nphp1	intron	ENSMUSG00000027378	NonProperStrand	23	chr9	7792857	7792930	protein_coding	Tmem123	utr3	ENSMUSG00000050912	ProperStrand	15	1	-16.7697
chr19	10569334	10569382	SINE	B1_Mus1	Alu	chr19B1_Mus110569325	ProperStrand	1	chr19	10568588	10568646	SINE	RSINE1	B4	chr19RSINE110568594	ProperStrand	1	1	-inf
chr13	18469622	18469722	protein_coding	Pou6f2	intron	ENSMUSG00000009734	ProperStrand	4	chr2	163344807	163344896	protein_coding	Hnf4a	intron	ENSMUSG00000017950	ProperStrand	1	1	-inf
chr10	39653805	39653911	LINE	Lx2	L1	chr10Lx239653828	NonProperStrand	2	chr10	39646265	39646286	protein_coding	2010001E11Rik	intron	ENSMUSG00000039339	ProperStrand	3	1	-20.8297
chr6	3201470	3201519	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	80723058	80723129	protein_coding	Tnrc6b	intron	ENSMUSG00000047888	ProperStrand	52	1	-3.1519
chr16	7928952	7929038	SINE	B1_Mus1	Alu	chr16B1_Mus17928976	ProperStrand	2	chr17	26184567	26184630	protein_coding	Rab11fip3	intron	ENSMUSG00000037098	NonProperStrand	45	2	-inf
chr8	60660267	60660340	lincRNA	Gm17517	intron	ENSMUSG00000091944	ProperStrand	4	chr7	27987219	27987241	protein_coding	BC024978	intron	ENSMUSG00000078786	NonProperStrand	8	1	-inf
chr5	56292875	56292976	LINE	L1Md_F2	L1	chr5L1Md_F256292516	NonProperStrand	1	chr5	56293120	56293210	LTR	ORR1A1	MaLR	chr5ORR1A156293015	ProperStrand	1	1	-inf
chr7	118537594	118537611	LINE	L2c	L2	chr7L2c118537570	NonProperStrand	3	chr5	110158156	110158297	LTR	IAPEz-int	ERVK	chr5IAPEz-int110155824	ProperStrand	1	1	-inf
chr10	105782774	105782855	LINE	Lx	L1	chr10Lx105782081	NonProperStrand	3	chr10	105793399	105793430	LTR	RMER13A	ERVK	chr10RMER13A105793356	ProperStrand	1	1	-inf
chr10	40258503	40258625	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr14	19278163	19278194	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-4.8981
chr13	44869585	44869895	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr8	126937139	126939900	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-3.2943
chr16	38241213	38241258	protein_coding	Gsk3b	utr3	ENSMUSG00000022812	ProperStrand	96	chr1	128398114	128398227	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-8.3455
chr12	84459371	84459446	LINE	L1_Mus1	L1	chr12L1_Mus184457998	ProperStrand	4	chr2	120034279	120034364	protein_coding	Pla2g4e	intron	ENSMUSG00000050211	NonProperStrand	45	1	-18.4004
chr3	30999084	31000201	protein_coding-noncoding	Skil	utr5	ENSMUSG00000027660	ProperStrand	9	chr3	31000352	31000426	protein_coding	Skil	intron	ENSMUSG00000027660	ProperStrand	56	3	-19.8565
chr17	54752708	54752798	LINE	L1M4b	L1	chr17L1M4b54752379	ProperStrand	1	chr17	54752959	54753059	LINE	L1M4b	L1	chr17L1M4b54752909	ProperStrand	1	1	-inf
chr1	33478410	33478532	LINE	L2	L2	chr1L233478428	NonProperStrand	1	chr17	39846750	39846789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	36608610	36608657	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	83	chr5	138165478	138165535	SINE	ID_B1	B4	chr5ID_B1138165342	NonProperStrand	1	1	-inf
chr13	23500944	23501018	LTR	MT2B	ERVL	chr13MT2B23500813	NonProperStrand	1	chr4	117154514	117154583	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-inf
chr9	123462017	123462054	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr19	40119768	40119882	protein_coding	Cyp2c54	intron	ENSMUSG00000067225	NonProperStrand	1	1	-inf
chrX	3432114	3432213	LTR	RLTR6-int	ERV1	chrXRLTR6-int3431436	NonProperStrand	1	chrX	3432435	3432525	LTR	RLTR6_Mm	ERV1	chrXRLTR6_Mm3432389	NonProperStrand	1	1	-inf
chr4	129325342	129325387	protein_coding	Kpna6	exon	ENSMUSG00000003731	ProperStrand	20	chr9	40323759	40323824	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-10.2994
chr17	39847028	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	80338068	80338087	LTR	MLT1A0	MaLR	chr2MLT1A080338054	ProperStrand	1	1	-inf
chr17	39848503	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr16	16886944	16886985	protein_coding	Top3b	intron	ENSMUSG00000022779	ProperStrand	22	1	-3.4476
chr11	60558296	60558344	protein_coding	Top3a	intron	ENSMUSG00000002814	NonProperStrand	55	chr11	87426786	87426881	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-12.0056
chr9	22243624	22243712	protein_coding	9530077C05Rik	intron	ENSMUSG00000036411	ProperStrand	17	chr15	99034587	99034614	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	1	-14.6948
chr17	33933225	33933415	LINE	L1MC	L1	chr17L1MC33933321	NonProperStrand	6	chr17	33933115	33933205	LTR	ORR1B1	MaLR	chr17ORR1B133933016	ProperStrand	6	6	-inf
chr2	118475930	118476030	LTR	MurERV4-int	ERVK	chr2MurERV4-int118475882	NonProperStrand	2	chr2	118476042	118476133	LTR	RMER4A	ERVK	chr2RMER4A118476041	NonProperStrand	5	2	-inf
chr12	54696827	54696879	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr11	58105157	58105219	protein_coding	4930438A08Rik	intron	ENSMUSG00000069873	ProperStrand	12	1	-13.6642
chr14	56430933	56431023	SINE	B1_Mus2	Alu	chr14B1_Mus256430889	NonProperStrand	1	chr14	56431043	56431143	SINE	B2_Mm2	B2	chr14B2_Mm256431070	NonProperStrand	1	1	-inf
chr17	39846428	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	29032718	29032768	LTR	RMER10A	ERVL	chr17RMER10A29032520	ProperStrand	4	1	-3.6552
chr15	64178751	64178819	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr4	140809938	140810002	protein_coding	Arhgef19	intron	ENSMUSG00000028919	NonProperStrand	5	1	-13.8112
chr15	100657561	100657651	LINE	L1MD3	L1	chr15L1MD3100657535	ProperStrand	1	chr15	100657269	100657369	SINE	B1_Mus2	Alu	chr15B1_Mus2100657235	NonProperStrand	1	1	-inf
chr17	83485324	83485414	DNA	Tigger12c	MER2_type	chr17Tigger12c83485268	NonProperStrand	1	chr17	83485611	83485711	LTR	LTR78	ERV1	chr17LTR7883485544	NonProperStrand	1	1	-inf
chr2	130276236	130276348	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	132	chr6	64083346	64083365	protein_coding	Grid2	intron	ENSMUSG00000071424	ProperStrand	24	1	-12.2951
chr19	43872492	43872582	protein_coding-noncoding	Abcc2	utr5	ENSMUSG00000025194	NonProperStrand	2	chr19	43872397	43872497	protein_coding	Abcc2	intron	ENSMUSG00000025194	NonProperStrand	51	2	-inf
chr1	55543331	55543412	protein_coding	Plcl1	intron	ENSMUSG00000038349	NonProperStrand	12	chr4	56875220	56875277	protein_coding	Ctnnal1	intron	ENSMUSG00000038816	ProperStrand	58	1	-15.3814
chr2	21754282	21754382	LTR	IAPEY_LTR	ERVK	chr2IAPEY_LTR21754305	ProperStrand	1	chr2	21754669	21754759	LTR	IAPEy-int	ERVK	chr2IAPEy-int21754689	ProperStrand	1	1	-inf
chr15	7369042	7369132	LTR	MTEa	MaLR	chr15MTEa7368866	ProperStrand	1	chr15	7369176	7369276	SINE	MIRc	MIR	chr15MIRc7369199	NonProperStrand	1	1	-inf
chr11	76617810	76617880	protein_coding	Cpd	intron	ENSMUSG00000020841	ProperStrand	111	chr2	119888497	119888577	protein_coding	Spnb5	intron	ENSMUSG00000074899	NonProperStrand	17	1	-13.3488
chr5	146261024	146261093	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	61155764	61157193	protein_coding	Slc47a2	intron	ENSMUSG00000069855	ProperStrand	19	2	-11.8465
chr17	39847611	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	87386856	87386937	SINE	B3	B2	chr1B387386862	NonProperStrand	1	1	-inf
chr13	23420662	23420700	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	NonProperStrand	29	chr2	5379294	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.9680
chr4	139461867	139461886	SINE	B3	B2	chr4B3139461765	ProperStrand	6	chr4	139461885	139462243	SINE	MIRc	MIR	chr4MIRc139462128	ProperStrand	1	1	-inf
chr7	80766916	80767006	LTR	RLTR19	ERVK	chr7RLTR1980766864	NonProperStrand	6	chr7	80766757	80766857	SINE	B1_Mus2	Alu	chr7B1_Mus280766709	ProperStrand	6	6	-inf
chr17	17234385	17234455	LINE	L1Md_F2	L1	chr17L1Md_F217233870	ProperStrand	1	chr17	17234468	17234552	LINE	L1Md_T	L1	chr17L1Md_T17234446	ProperStrand	1	1	-inf
chr5	33522030	33522097	LTR	RMER19B	ERVK	chr5RMER19B33521324	ProperStrand	29	chr18	60776454	60776531	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	1	-11.5871
chrX	49162979	49163044	LINE	Lx7	L1	chrXLx749162994	NonProperStrand	1	chr9	65695200	65695255	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	1	-inf
chr11	102816148	102816235	lincRNA	Gm17536	intron	ENSMUSG00000091056	NonProperStrand	62	chr7	127462237	127462303	protein_coding	Abca14	intron	ENSMUSG00000062017	ProperStrand	33	1	-13.1664
chr3	105761571	105761661	protein_coding-noncoding	Atp5f1	utr3	ENSMUSG00000000563	ProperStrand	3	chr3	105761440	105761540	protein_coding	Atp5f1	intron	ENSMUSG00000000563	ProperStrand	6	3	-inf
chr4	75141332	75141422	LINE	L1MA4	L1	chr4L1MA475141338	ProperStrand	1	chr4	75141629	75141729	LINE	L1Md_T	L1	chr4L1Md_T75141588	NonProperStrand	1	1	-inf
chr11	102489704	102489723	SINE	B1F1	Alu	chr11B1F1102489662	NonProperStrand	1	chr8	109604858	109604984	protein_coding	Terf2	intron	ENSMUSG00000031921	ProperStrand	37	1	-inf
chr14	99931607	99931674	LINE	Lx9	L1	chr14Lx999931289	ProperStrand	2	chr14	99919310	99919354	SINE	MIRb	MIR	chr14MIRb99919278	NonProperStrand	1	1	-inf
chr5	146313172	146313262	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int146312040	NonProperStrand	1	chr5	146313672	146313772	LTR	IAPEY3-int	ERVK	chr5IAPEY3-int146313553	NonProperStrand	1	1	-inf
chr17	39846740	39846767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	32336089	32336106	protein_coding	Pik3ca	exon	ENSMUSG00000027665	ProperStrand	5	1	-3.1907
chr11	116885305	116885405	LTR	RMER12	ERVK	chr11RMER12116885325	ProperStrand	1	chr11	116885002	116885091	SINE	B3	B2	chr11B3116884921	ProperStrand	1	1	-inf
chr14	16835840	16835940	LINE	L1_Mus1	L1	chr14L1_Mus116835352	NonProperStrand	1	chr14	16836103	16836193	SINE	B1F1	Alu	chr14B1F116836087	ProperStrand	1	1	-inf
chr14	100164560	100164662	LINE	Lx8	L1	chr14Lx8100163823	ProperStrand	1	chr13	97190601	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr10	97245478	97245578	LINE	L1MEf	L1	chr10L1MEf97245421	ProperStrand	1	chr10	97245715	97245806	LTR	MLT1B	MaLR	chr10MLT1B97245640	NonProperStrand	1	1	-inf
chr5	66317107	66317192	LINE	Lx8	L1	chr5Lx866316674	ProperStrand	3	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-12.9165
chr7	59986777	59987436	LINE	L1Md_T	L1	chr7L1Md_T59986768	NonProperStrand	6	chr7	59987442	59987561	LTR	RLTR13D6	ERVK	chr7RLTR13D659987437	ProperStrand	6	6	-inf
chr11	109011685	109011715	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	180193822	180193842	protein_coding	Slco4a1	intron	ENSMUSG00000038963	NonProperStrand	161	2	-7.0041
chr1	183117658	183117758	protein_coding-noncoding	Wdr26	utr3	ENSMUSG00000038733	ProperStrand	2	chr1	183117757	183117847	protein_coding	Wdr26	exon	ENSMUSG00000038733	ProperStrand	36	2	-inf
chr6	3201474	3201557	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	100454127	100454181	protein_coding	Dnajc7	intron	ENSMUSG00000014195	NonProperStrand	4	1	-8.3508
chr9	123462112	123462140	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	36832868	36832959	protein_coding	Zap70	intron	ENSMUSG00000026117	NonProperStrand	11	1	-4.1956
chr2	113698791	113698882	SINE	B1_Mus1	Alu	chr2B1_Mus1113698805	NonProperStrand	1	chr12	78350872	78350911	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr16	86797787	86797877	LTR	ORR1D2-int	MaLR	chr16ORR1D2-int86797599	ProperStrand	1	chr16	86798105	86798205	LTR	RMER10B	ERVL	chr16RMER10B86798007	NonProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr2	26913038	26913267	LINE	Lx4B	L1	chr2Lx4B26913188	ProperStrand	21	1	-11.9348
chr8	70895981	70896158	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	chr9	53817516	53817616	protein_coding	Elmod1	intron	ENSMUSG00000041986	NonProperStrand	34	1	-11.7117
chr4	40386891	40386991	LTR	IAP-d-int	ERVK	chr4IAP-d-int40386908	NonProperStrand	1	chr4	40386617	40386707	LTR	RLTR10-int	ERVK	chr4RLTR10-int40385837	NonProperStrand	1	1	-inf
chr7	16031283	16031425	LTR	RLTR15	ERVK	chr7RLTR1516031297	NonProperStrand	3	chr7	16030825	16031035	Other	RMER1C	Other	chr7RMER1C16030817	ProperStrand	3	3	-inf
chr10	80064402	80066555	SINE	B1_Mus1	Alu	chr10B1_Mus180064378	ProperStrand	7	chr10	80066560	80066650	protein_coding	Adat3	intron	ENSMUSG00000035370	NonProperStrand	11	7	-inf
chr12	54729715	54729771	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chrX	51787356	51787454	protein_coding	Gm16430	intron	ENSMUSG00000079590	NonProperStrand	3	1	-16.7351
chr9	109711239	109711329	LTR	RLTR8	ERVK	chr9RLTR8109710997	ProperStrand	1	chr9	109711626	109711726	SINE	B2_Mm2	B2	chr9B2_Mm2109711533	NonProperStrand	1	1	-inf
chr10	128624613	128625289	LINE	L1Md_F2	L1	chr10L1Md_F2128625017	ProperStrand	7	chr17	39847331	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-4.7560
chr2	39384414	39384431	LTR	IAPEz-int	ERVK	chr2IAPEz-int39383001	NonProperStrand	4	chr13	44869576	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.0813
chr1	74301900	74302005	protein_coding	Arpc2	intron	ENSMUSG00000006304	NonProperStrand	20	chr13	104074451	104074502	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	3	-inf
chr14	96935265	96935365	SINE	B1_Mus1	Alu	chr14B1_Mus196935243	ProperStrand	1	chr14	96935053	96935143	SINE	B4A	B4	chr14B4A96935017	NonProperStrand	1	1	-inf
chr2	90395141	90395180	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr8	106884123	106884212	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	1	-8.1592
chr9	45514321	45514443	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.7551
chr8	124524811	124524869	protein_coding-noncoding	Banp	utr5	ENSMUSG00000025316	ProperStrand	1	chr8	124524871	124524933	protein_coding	Banp	exon	ENSMUSG00000025316	ProperStrand	14	1	-inf
chr11	5996851	5996872	SINE	B3	B2	chr11B35996738	NonProperStrand	1	chr11	50030204	50030298	protein_coding	Mgat4b	intron	ENSMUSG00000036620	ProperStrand	4	1	-inf
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr18	34787731	34787812	protein_coding	Kif20a	exon	ENSMUSG00000003779	ProperStrand	8	1	-5.1688
chr12	59040334	59040424	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr2	52074491	52074591	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-8.3768
chr1	179146736	179146816	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-4.7041
chr19	53003790	53004829	LTR	IAPEz-int	ERVK	chr19IAPEz-int53002879	ProperStrand	3	chr19	53002517	53003770	LTR	IAPLTR1a_Mm	ERVK	chr19IAPLTR1a_Mm53002543	ProperStrand	3	3	-inf
chr4	21957121	21957221	DNA	MER5A1	MER1_type	chr4MER5A121957136	ProperStrand	1	chr4	21956972	21957063	SINE	B2_Mm1t	B2	chr4B2_Mm1t21956876	NonProperStrand	1	1	-inf
chr18	34471385	34471436	protein_coding	Apc	intron	ENSMUSG00000005871	NonProperStrand	35	chr12	76953004	76953094	protein_coding	Syne2	intron	ENSMUSG00000063450	NonProperStrand	141	1	-11.3953
chr9	57140785	57140875	LTR	ORR1A3	MaLR	chr9ORR1A357140655	ProperStrand	3	chr9	57140877	57140977	LTR	RMER6A	ERVK	chr9RMER6A57140868	NonProperStrand	3	3	-inf
chr10	93583456	93583475	protein_coding	Fgd6	intron	ENSMUSG00000020021	NonProperStrand	12	chr17	24998995	24999089	protein_coding	Hagh	intron	ENSMUSG00000024158	NonProperStrand	8	1	-19.5831
chr3	34673840	34673930	SINE	B1_Mur1	Alu	chr3B1_Mur134673778	NonProperStrand	2	chr3	34673972	34674072	SINE	ID_B1	B4	chr3ID_B134673949	NonProperStrand	2	2	-inf
chr6	4759389	4759454	lincRNA	RP23-353M17.3	exon	ENSMUSG00000093570	NonProperStrand	55	chr6	5047105	5047160	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	1	-9.2748
chr10	99301565	99301665	LINE	Lx9	L1	chr10Lx999301080	NonProperStrand	1	chr10	99301683	99301773	Simple_repeat	(CATATA)n	Simple_repeat	chr10(CATATA)n99301701	NonProperStrand	1	1	-inf
chrX	165491076	165491093	antisense	Gm15261	.	ENSMUSG00000087201	ProperStrand	3	chr9	123461998	123462161	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr4	142194475	142194531	SINE	ID_B1	B4	chr4ID_B1142194491	NonProperStrand	5	chr4	142191623	142191646	SINE	MIR	MIR	chr4MIR142191566	ProperStrand	1	1	-inf
chr8	103725176	103725266	LINE	L1Md_F2	L1	chr8L1Md_F2103724788	NonProperStrand	1	chr8	103724648	103724748	LINE	Lx8	L1	chr8Lx8103724120	NonProperStrand	1	1	-inf
chr1	171103039	171103122	LINE	L1_Mur2	L1	chr1L1_Mur2171102968	NonProperStrand	1	chr17	39843453	39843497	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39846414	39846487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	4782413	4782496	SINE	B1_Mus2	Alu	chr19B1_Mus24782343	NonProperStrand	3	1	-4.3017
chr17	39848500	39848592	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	84699694	84699713	LINE	Lx2	L1	chr8Lx284698625	NonProperStrand	21	1	-3.5346
chr2	156392039	156392139	protein_coding	0610011L14Rik	intron	ENSMUSG00000027628	NonProperStrand	56	chr6	32894141	32894231	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-9.7075
chr15	10575198	10575310	protein_coding	Rai14	intron	ENSMUSG00000022246	ProperStrand	160	chr5	114852014	114852036	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-7.3463
chr16	72754152	72754244	protein_coding	Robo1	intron	ENSMUSG00000022883	ProperStrand	177	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.8908
chr13	111608703	111608753	LINE	Lx9	L1	chr13Lx9111608683	NonProperStrand	1	chr19	29023935	29023988	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	59	1	-inf
chrX	109160974	109161020	protein_coding	Tex16	intron	ENSMUSG00000034555	ProperStrand	3	chr17	3177616	3177698	protein_coding	Scaf8	exon	ENSMUSG00000046201	ProperStrand	73	1	-18.1248
chr12	54791377	54791464	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr5	142636235	142636274	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-7.0859
chr17	39847173	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	25293609	25293633	protein_coding	Zfp428	intron	ENSMUSG00000064264	ProperStrand	4	1	-4.8204
chr13	29964679	29964816	SINE	B1_Mur2	Alu	chr13B1_Mur229964697	ProperStrand	3	chr12	102136846	102136862	protein_coding	Gpr68	intron	ENSMUSG00000047415	ProperStrand	5	1	-inf
chr9	33858542	33858642	LINE	Lx6	L1	chr9Lx633858484	ProperStrand	1	chr9	33858157	33858247	SINE	B3A	B2	chr9B3A33858164	ProperStrand	1	1	-inf
chr1	102794008	102794108	LINE	L1Md_F2	L1	chr1L1Md_F2102793760	ProperStrand	1	chr1	102793532	102793622	LINE	L1VL4	L1	chr1L1VL4102792805	ProperStrand	1	1	-inf
chr17	39847611	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	47819673	47819711	lincRNA	Gm16675	intron	ENSMUSG00000085052	ProperStrand	2	1	-5.4040
chr17	27020733	27020749	antisense	Gm20468	.	ENSMUSG00000092539	ProperStrand	19	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	1	-14.4622
chr6	123866986	123867086	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int123866068	NonProperStrand	1	chr6	123867382	123867472	LTR	RMER16-int	ERVK	chr6RMER16-int123867133	NonProperStrand	1	1	-inf
chr2	30809454	30811373	protein_coding-noncoding	Tor1b	utr5	ENSMUSG00000026848	ProperStrand	7	chr2	30809434	30813920	protein_coding	Tor1b	exon	ENSMUSG00000026848	ProperStrand	7	2	-inf
chr17	39846585	39846636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	102586708	102586769	SINE	ID_B1	B4	chr9ID_B1102586703	ProperStrand	1	1	-inf
chr9	57139880	57139980	LTR	ORR1A2	MaLR	chr9ORR1A257139884	ProperStrand	2	chr9	57139795	57139884	LTR	RMER6A	ERVK	chr9RMER6A57139501	NonProperStrand	2	2	-inf
chr1	21066518	21066540	protein_coding	Tram2	intron	ENSMUSG00000041779	ProperStrand	58	chr7	98599752	98599784	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-7.4938
chr14	19278161	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr2	168925976	168926059	LTR	MLT1J	MaLR	chr2MLT1J168925836	NonProperStrand	1	1	-inf
chr17	39846669	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	15961702	15961742	LTR	ORR1A2	MaLR	chr19ORR1A215961697	ProperStrand	2	1	-5.3533
chr13	89656362	89656412	LINE	Lx4B	L1	chr13Lx4B89656329	NonProperStrand	4	chr13	89689391	89689461	protein_coding	Hapln1	intron	ENSMUSG00000021613	NonProperStrand	42	1	-18.6762
chr13	62468475	62468565	LTR	ORR1D2	MaLR	chr13ORR1D262468500	NonProperStrand	1	chr13	62468330	62468430	SINE	B1_Mus2	Alu	chr13B1_Mus262468354	ProperStrand	1	1	-inf
chr5	124411078	124411178	protein_coding	Ccdc62	intron	ENSMUSG00000061882	NonProperStrand	30	chr5	124410893	124410983	protein_coding	Ccdc62	intron	ENSMUSG00000061882	ProperStrand	2	1	-22.0647
chr8	24335836	24335926	LINE	Lx5	L1	chr8Lx524335776	ProperStrand	2	chr4	33474729	33474829	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	100	1	-18.3845
chr17	39847102	39847155	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	44398079	44398106	LTR	ETnERV2-int	ERVK	chr19ETnERV2-int44397387	NonProperStrand	6	1	-3.9545
chr17	39846718	39846744	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	25437491	25437555	SINE	B3A	B2	chr7B3A25437393	NonProperStrand	1	1	-inf
chr6	101753099	101753189	LINE	Lx4B	L1	chr6Lx4B101753045	ProperStrand	3	chr6	101752821	101752920	LTR	IAPEY2_LTR	ERVK	chr6IAPEY2_LTR101752707	ProperStrand	3	3	-inf
chr6	122472558	122472648	protein_coding-noncoding	Mfap5	utr5	ENSMUSG00000030116	NonProperStrand	4	chr6	122464121	122472551	protein_coding	Mfap5	intron	ENSMUSG00000030116	NonProperStrand	22	3	-inf
chr6	50158692	50158792	protein_coding	Dfna5	intron	ENSMUSG00000029821	NonProperStrand	23	chr6	50143775	50145854	protein_coding	Mpp6	intron	ENSMUSG00000038388	ProperStrand	34	1	-15.1157
chr2	58016528	58016628	antisense	Gm13546	.	ENSMUSG00000086862	ProperStrand	1	chr2	58016364	58016454	protein_coding	Cytip	intron	ENSMUSG00000026832	NonProperStrand	3	1	-inf
chr2	77815672	77815772	LTR	MURVY-LTR	ERV1	chr2MURVY-LTR77815616	ProperStrand	2	chr2	77815543	77815633	SINE	B2_Mm2	B2	chr2B2_Mm277815465	ProperStrand	2	2	-inf
chr11	5740707	5740735	LTR	LTRIS2	ERV1	chr11LTRIS25740704	NonProperStrand	2	chr11	5741296	5741377	LTR	MLT1D	MaLR	chr11MLT1D5741262	ProperStrand	1	1	-inf
chr4	77869568	77869668	LINE	Lx2B	L1	chr4Lx2B77869464	NonProperStrand	1	chr4	77869351	77869441	SINE	B3	B2	chr4B377869314	ProperStrand	1	1	-inf
chr14	8598198	8598298	processed_transcript	Gm10044	.	ENSMUSG00000072723	ProperStrand	28	chr17	81047378	81047468	protein_coding	Map4k3	intron	ENSMUSG00000024242	ProperStrand	22	1	-15.6182
chr17	39843993	39844023	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr12	3239367	3239468	protein_coding	1700012B15Rik	intron	ENSMUSG00000079179	ProperStrand	5	1	-9.0377
chr16	28801229	28801329	LINE	Lx2B	L1	chr16Lx2B28800567	ProperStrand	1	chr16	28801598	28801688	LINE	Lx3C	L1	chr16Lx3C28801525	NonProperStrand	1	1	-inf
chr18	41893232	41893296	LINE	Lx5	L1	chr18Lx541892884	ProperStrand	1	chr17	39846415	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	31929097	31929145	protein_coding	Mrpl33	intron	ENSMUSG00000029142	ProperStrand	100	chr1	11437646	11437731	protein_coding	A830018L16Rik	intron	ENSMUSG00000057715	ProperStrand	31	2	-19.5265
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	126649679	126649782	protein_coding	Pdilt	intron	ENSMUSG00000030968	NonProperStrand	6	2	-5.2646
chr11	82764831	82764921	antisense	1700003F17Rik	.	ENSMUSG00000086327	NonProperStrand	5	chr11	82764931	82765031	protein_coding	Slfn5	intron	ENSMUSG00000054404	ProperStrand	13	2	-inf
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr5	121205429	121205488	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-10.2943
chr17	39848164	39848264	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	111223991	111224081	protein_coding	Trank1	intron	ENSMUSG00000062296	ProperStrand	13	1	-4.1930
chr5	146261005	146261204	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	35557081	35577015	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	2	-3.3298
chr2	29643444	29643514	protein_coding-noncoding	Coq4	utr5	ENSMUSG00000026798	ProperStrand	8	chr2	29643771	29643795	protein_coding	Coq4	utr5	ENSMUSG00000026798	ProperStrand	35	1	-17.2506
chr6	27192368	27192468	LTR	MTD-int	MaLR	chr6MTD-int27192255	NonProperStrand	1	chr6	46655212	46655302	protein_coding	Cntnap2	intron	ENSMUSG00000039419	ProperStrand	55	1	-inf
chr2	157873879	157873979	protein_coding-noncoding	Rprd1b	utr5	ENSMUSG00000027651	ProperStrand	4	chr2	157878306	157878396	protein_coding	Rprd1b	intron	ENSMUSG00000027651	ProperStrand	72	2	-inf
chr19	8547434	8547534	LINE	L1MB8	L1	chr19L1MB88547436	NonProperStrand	1	chr19	8547727	8547817	LINE	L1MB8	L1	chr19L1MB88547658	NonProperStrand	1	1	-inf
chr2	128683974	128684077	LINE	Lx9	L1	chr2Lx9128683769	NonProperStrand	1	chr9	58876371	58876388	protein_coding	Neo1	intron	ENSMUSG00000032340	NonProperStrand	25	1	-inf
chr10	94208137	94208201	protein_coding	Ccdc41	intron	ENSMUSG00000020024	ProperStrand	17	chr9	123462115	123462143	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr19	7065482	7065504	protein_coding	Dnajc4	intron	ENSMUSG00000024963	NonProperStrand	5	chr11	33220093	33220197	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	2	-20.3465
chr18	67955526	67955553	SINE	RSINE1	B4	chr18RSINE167955422	ProperStrand	1	chr9	123461798	123461869	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	134341096	134341118	Low_complexity	GA-rich	Low_complexity	chr5GA-rich134340990	NonProperStrand	1	chr8	114801174	114801287	SINE	B3A	B2	chr8B3A114801202	ProperStrand	2	1	-inf
chr8	41787496	41787596	LTR	RMER12	ERVK	chr8RMER1241787256	ProperStrand	1	chr8	41787705	41787795	SINE	B3	B2	chr8B341787655	NonProperStrand	1	1	-inf
chr17	39843488	39843550	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr12	70426201	70426219	protein_coding	Nemf	intron	ENSMUSG00000020982	ProperStrand	1	1	-inf
chr2	154427619	154427659	protein_coding	Pxmp4	intron	ENSMUSG00000000876	ProperStrand	10	chr5	93117710	93117741	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	1	-13.6231
chr9	123462100	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	52021903	52151757	protein_coding	Gm7247	intron	ENSMUSG00000068399	ProperStrand	12	2	-6.8720
chr16	18949097	18949225	protein_coding	Hira	intron	ENSMUSG00000022702	ProperStrand	110	chr13	113829004	113829036	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	2	-13.4832
chrX	42813554	42816787	LINE	Lx8	L1	chrXLx842816620	ProperStrand	2	chr17	39843369	39843506	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr3	83902715	83902752	protein_coding	Mnd1	intron	ENSMUSG00000033752	ProperStrand	41	chr9	78479187	78479371	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-8.2695
chr8	45248665	45248758	LINE	L1Md_F3	L1	chr8L1Md_F345243637	NonProperStrand	6	chr13	33965913	33966012	LTR	ORR1A4	MaLR	chr13ORR1A433965734	NonProperStrand	1	1	-inf
chr17	80205374	80205883	LTR	ORR1B2	MaLR	chr17ORR1B280205136	NonProperStrand	3	chr4	5662872	5662962	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	1	-16.5533
chr14	74733559	74733649	LTR	ORR1E	MaLR	chr14ORR1E74733478	NonProperStrand	1	chr14	74733960	74734060	Simple_repeat	(TC)n	Simple_repeat	chr14(TC)n74733974	ProperStrand	1	1	-inf
chr2	34806785	34806838	protein_coding	Traf1	intron	ENSMUSG00000026875	NonProperStrand	7	chr9	51946975	51946992	protein_coding	Zc3h12c	intron	ENSMUSG00000035164	ProperStrand	10	1	-20.7396
chr6	4755026	4755079	LINE	L1MB2	L1	chr6L1MB24755025	ProperStrand	3	chr6	4754835	4754875	LINE	Lx2	L1	chr6Lx24754613	ProperStrand	26	1	-inf
chr19	10622145	10622460	protein_coding	Tmem216	intron	ENSMUSG00000024667	NonProperStrand	60	chr19	10621962	10622130	protein_coding	Cpsf7	utr3	ENSMUSG00000034820	ProperStrand	82	5	-inf
chr11	19943058	19943119	DNA	MER20B	MER1_type	chr11MER20B19943058	NonProperStrand	1	chr17	39847552	39847636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	100273051	100273105	SINE	MIRc	MIR	chr7MIRc100273009	ProperStrand	1	chr6	119361842	119361863	protein_coding	Adipor2	intron	ENSMUSG00000030168	ProperStrand	19	1	-inf
chr5	122175820	122175924	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-7.2294
chr8	68018181	68018243	LINE	L1Md_F2	L1	chr8L1Md_F268016125	ProperStrand	1	chr8	68033307	68033379	LINE	L1Md_F2	L1	chr8L1Md_F268033190	NonProperStrand	1	1	-inf
chr2	6134214	6139137	antisense	A230108P19Rik	.	ENSMUSG00000087125	NonProperStrand	4	chr1	34022664	34022780	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-12.4440
chr17	39843862	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr15	12134895	12134960	protein_coding	Mtmr12	utr5	ENSMUSG00000039458	ProperStrand	31	1	-4.2032
chr17	39848140	39848173	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr13	13712761	13712820	protein_coding	Lyst	intron	ENSMUSG00000019726	ProperStrand	14	1	-4.0485
chr17	70963679	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr12	100446868	100446900	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	1	-4.6161
chr8	71304147	71304213	LINE	L1_Mur3	L1	chr8L1_Mur371303428	NonProperStrand	1	chr17	39846660	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	108561818	108561854	Simple_repeat	(A)n	Simple_repeat	chr9(A)n108561816	ProperStrand	1	chr16	91270861	91270877	protein_coding	Olig1	exon	ENSMUSG00000046160	NonProperStrand	4	1	-inf
chr11	85688073	85688173	LTR	MTC	MaLR	chr11MTC85688043	NonProperStrand	3	chr11	85687974	85688064	LTR	ORR1D1	MaLR	chr11ORR1D185687718	NonProperStrand	3	3	-inf
chr2	177773085	177773185	LTR	ORR1A0-int	MaLR	chr2ORR1A0-int177771400	NonProperStrand	1	chr2	177773185	177773275	LTR	ORR1A0	MaLR	chr2ORR1A0177773190	NonProperStrand	1	1	-inf
chr1	75476011	75476101	protein_coding	Obsl1	intron	ENSMUSG00000026211	ProperStrand	7	chr1	75475762	75475862	protein_coding	Chpf	utr5	ENSMUSG00000032997	ProperStrand	7	1	-inf
chr4	94559756	94559851	LINE	L1Md_T	L1	chr4L1Md_T94557860	NonProperStrand	1	chrX	76128868	76128890	LINE	Lx7	L1	chrXLx776128816	NonProperStrand	6	1	-inf
chr1	134605789	134605848	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr17	32198753	32198932	protein_coding	Rrp1b	utr3	ENSMUSG00000058392	NonProperStrand	36	3	-inf
chr17	39847216	39847290	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	5229629	5229691	protein_coding	Zfhx4	intron	ENSMUSG00000025255	ProperStrand	6	1	-3.9545
chr11	109660085	109664090	antisense	Gm11683	.	ENSMUSG00000087139	ProperStrand	8	chr11	109653886	109664138	protein_coding	1700012B07Rik	intron	ENSMUSG00000020617	NonProperStrand	12	3	-inf
chr6	33580755	33580828	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr2	155231872	155231928	protein_coding	Ncoa6	exon	ENSMUSG00000038369	ProperStrand	13	1	-9.9103
chr19	43532745	43532772	protein_coding	Cnnm1	intron	ENSMUSG00000025189	NonProperStrand	10	chr2	120516757	120516795	protein_coding	Stard9	intron	ENSMUSG00000033705	NonProperStrand	75	1	-15.2493
chr8	9517199	9517300	protein_coding	Fam155a	intron	ENSMUSG00000079157	NonProperStrand	20	chr8	9628155	9628245	protein_coding	Fam155a	intron	ENSMUSG00000079157	ProperStrand	16	1	-16.9430
chr11	78049494	78049521	protein_coding	Supt6h	intron	ENSMUSG00000002052	ProperStrand	2	chr3	123363480	123363583	protein_coding	Ndst3	intron	ENSMUSG00000027977	NonProperStrand	41	1	-20.9076
chr17	39847736	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	99118533	99118560	LTR	RMER21A	ERV1	chr9RMER21A99118243	ProperStrand	1	1	-inf
chr6	109509869	109509959	LINE	Lx4B	L1	chr6Lx4B109509720	ProperStrand	1	chr6	109510136	109510236	LINE	Lx4B	L1	chr6Lx4B109509989	ProperStrand	1	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	53635978	53636003	LTR	MLT2D	ERVL	chr5MLT2D53635798	NonProperStrand	5	1	-3.1907
chr7	143290850	143290918	LTR	ORR1A4	MaLR	chr7ORR1A4143290837	ProperStrand	12	chr6	83192493	83192585	protein_coding	Slc4a5	intron	ENSMUSG00000068323	ProperStrand	48	1	-15.7499
chr2	153516680	153516780	SINE	B1_Mur1	Alu	chr2B1_Mur1153516624	ProperStrand	2	chr2	153516842	153516932	SINE	B2_Mm1t	B2	chr2B2_Mm1t153516800	ProperStrand	2	2	-inf
chr5	30060679	30060779	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	chr15	78324298	78324388	protein_coding	Il2rb	intron	ENSMUSG00000068227	NonProperStrand	1	1	-inf
chr8	120392583	120392654	DNA	Tigger8	MER2_type	chr8Tigger8120392201	NonProperStrand	1	chr17	39846655	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	121635923	121636058	LINE	L1MC1	L1	chr11L1MC1121635119	ProperStrand	2	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-15.3042
chr9	51492623	51492713	LTR	ORR1A2	MaLR	chr9ORR1A251492544	NonProperStrand	1	chr9	51492381	51492481	SINE	B3	B2	chr9B351492368	ProperStrand	1	1	-inf
chr17	39847277	39847319	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	54852170	54852250	SINE	MIR	MIR	chr4MIR54852170	ProperStrand	1	1	-inf
chr15	19703370	19703460	LINE	L1_Mus3	L1	chr15L1_Mus319703293	ProperStrand	1	chr15	19703180	19703280	SINE	B1_Mus2	Alu	chr15B1_Mus219703142	ProperStrand	1	1	-inf
chr7	133007081	133016881	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	chr7	133022457	133081245	protein_coding	Gsg1l	utr3	ENSMUSG00000046182	ProperStrand	1884	3	-6.0936
chr3	153911461	153911491	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr19	5673548	5674938	protein_coding	Pcnxl3	exon	ENSMUSG00000054874	ProperStrand	84	1	-8.1938
chr4	131881306	131881378	protein_coding-noncoding	Trnau1ap	utr3	ENSMUSG00000028898	NonProperStrand	9	chr4	131890409	131890492	protein_coding	Rcc1	exon	ENSMUSG00000028896	NonProperStrand	30	1	-17.3122
chr11	68817519	68817606	protein_coding	Pfas	intron	ENSMUSG00000020899	ProperStrand	51	chr2	33151799	33151829	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-8.5429
chr7	34212891	34213008	LINE	L1M3	L1	chr7L1M334212870	NonProperStrand	12	chr5	77279400	77279422	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	1	-13.0582
chr17	39847654	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	127426527	127426625	protein_coding	Gm505	intron	ENSMUSG00000031986	ProperStrand	2	2	-inf
chr5	24565731	24565803	protein_coding	Prkag2	intron	ENSMUSG00000028944	ProperStrand	69	chr10	80249185	80249237	protein_coding	Dot1l	exon	ENSMUSG00000061589	ProperStrand	91	1	-10.9039
chr17	39847636	39847668	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	38522545	38522644	LTR	MTA_Mm	MaLR	chr2MTA_Mm38522240	ProperStrand	1	1	-inf
chr7	30972083	30972151	protein_coding	Capns1	utr3	ENSMUSG00000001794	ProperStrand	3	chr3	116771336	116771388	protein_coding	1700061I17Rik	intron	ENSMUSG00000028009	ProperStrand	3	1	-20.2168
chr19	3670341	3670433	protein_coding	Lrp5	intron	ENSMUSG00000024913	ProperStrand	159	chr10	69266219	69266235	protein_coding	Ank3	intron	ENSMUSG00000069601	NonProperStrand	77	1	-9.5660
chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	30140474	30140565	SINE	B1_Mus2	Alu	chr6B1_Mus230140489	NonProperStrand	1	1	-inf
chr17	39846415	39846442	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	86359545	86359574	protein_coding	Tubd1	intron	ENSMUSG00000020513	NonProperStrand	3	1	-4.3017
chr17	19040912	19041012	LINE	L1_Mm	L1	chr17L1_Mm19040215	ProperStrand	1	chr9	5614975	5615065	LTR	IAPEy-int	ERVK	chr9IAPEy-int5614946	NonProperStrand	1	1	-inf
chr18	24242390	24242425	LTR	RMER19C	ERVK	chr18RMER19C24242011	NonProperStrand	2	chr9	123461935	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr1	138613094	138613147	lincRNA	Gm16880	intron	ENSMUSG00000085011	NonProperStrand	16	chr17	80603909	80604003	protein_coding	Srsf7	intron	ENSMUSG00000024097	ProperStrand	12	1	-17.9872
chr4	56758224	56758292	LTR	RLTR14	ERV1	chr4RLTR1456758136	NonProperStrand	4	chr4	56750514	56750592	SINE	RSINE1	B4	chr4RSINE156750522	ProperStrand	1	1	-inf
chr17	32156073	32156103	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	chr7	28174991	28175872	protein_coding	Spnb4	intron	ENSMUSG00000011751	NonProperStrand	106	1	-9.7556
chr13	91773357	91773458	protein_coding	Ssbp2	intron	ENSMUSG00000003992	NonProperStrand	14	chr14	33968095	33968185	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	3	-19.6437
chr17	39847188	39847265	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	86497075	86497095	protein_coding	Vmp1	intron	ENSMUSG00000018171	NonProperStrand	3	1	-5.4882
chr16	84732473	84734467	protein_coding	Mrpl39	intron	ENSMUSG00000022889	ProperStrand	7	chr9	78175387	78175453	protein_coding	Omt2b	utr5	ENSMUSG00000038750	NonProperStrand	30	1	-17.7902
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	26496234	26496328	antisense	5730588L14Rik	.	ENSMUSG00000086775	NonProperStrand	15	1	-10.6884
chr11	107409578	107409678	processed_transcript	A830035A12Rik	.	ENSMUSG00000059706	ProperStrand	30	chr11	107409733	107409823	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	1	-11.0078
chr5	24371962	24372129	protein_coding	Prkag2	exon	ENSMUSG00000028944	NonProperStrand	128	chr4	149120027	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-5.0873
chr10	127680849	127680949	protein_coding-noncoding	Timeless	utr5	ENSMUSG00000039994	ProperStrand	2	chr10	127680762	127680852	protein_coding	Timeless	intron	ENSMUSG00000039994	ProperStrand	14	1	-19.5799
chr5	4107595	4107685	DNA	Ricksha	MuDR	chr5Ricksha4107505	ProperStrand	1	chr5	4107408	4107508	SINE	B1F	Alu	chr5B1F4107399	NonProperStrand	1	1	-inf
chr15	81361760	81361843	LTR	RMER19B	ERVK	chr15RMER19B81361671	ProperStrand	2	chr11	68903285	68904403	protein_coding	Vamp2	utr3	ENSMUSG00000020894	ProperStrand	37	1	-21.5930
chr6	113274782	113274882	antisense	Gm15492	.	ENSMUSG00000085012	NonProperStrand	8	chr6	113274679	113274769	protein_coding	Brpf1	utr3	ENSMUSG00000001632	ProperStrand	30	1	-17.5395
chr13	114072160	114072260	LINE	L1Md_T	L1	chr13L1Md_T114070289	NonProperStrand	45	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.4249
chr3	19228742	19228764	LINE	Lx3_Mus	L1	chr3Lx3_Mus19228631	NonProperStrand	4	chr2	163625510	163626308	SINE	B4A	B4	chr2B4A163625444	NonProperStrand	1	1	-inf
chr15	68194030	68194083	lincRNA	Mir30d	exon	ENSMUSG00000093387	ProperStrand	16	chr8	12943856	12943937	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-11.3099
chr11	109011675	109011712	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	22149025	22149090	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-4.0892
chr5	115489521	115489596	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr9	40803993	40804078	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-4.6379
chr10	83140184	83140262	LTR	IAPEz-int	ERVK	chr10IAPEz-int83134017	NonProperStrand	3	chr17	39848099	39848151	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-7.3534
chr13	6625140	6625180	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr5	24491787	24491883	protein_coding	1500035N22Rik	utr5	ENSMUSG00000059631	ProperStrand	21	1	-10.0695
chr12	78350926	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr4	24565290	24565311	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-4.8259
chr17	4082297	4082386	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr15	91992936	91993036	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	4	1	-16.5712
chr17	39846962	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	142334216	142334240	SINE	B4A	B4	chr3B4A142334035	NonProperStrand	4	1	-3.6552
chr17	39847107	39847138	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	27087507	27088036	protein_coding	Gm10391	exon	ENSMUSG00000072672	ProperStrand	3	1	-5.4882
chr16	24687990	24688080	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr11	54944076	54944176	protein_coding	Slc36a3	intron	ENSMUSG00000049491	ProperStrand	154	1	-7.2434
chr11	105207447	105208908	protein_coding	Mrc2	intron	ENSMUSG00000020695	ProperStrand	48	chr10	62344648	62344716	protein_coding	Tet1	intron	ENSMUSG00000047146	NonProperStrand	4	1	-18.2691
chr17	39843403	39843493	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	156808988	156809088	protein_coding	Ndrg3	intron	ENSMUSG00000027634	ProperStrand	38	2	-5.7912
chr9	43782894	43782979	LINE	L1MB7	L1	chr9L1MB743782566	ProperStrand	1	chr8	25752248	25752279	protein_coding	Adam18	exon	ENSMUSG00000031552	ProperStrand	40	1	-inf
chr5	86832779	86832879	LINE	Lx2B	L1	chr5Lx2B86831984	ProperStrand	1	chr6	128764135	128764225	protein_coding	Klrb1b	utr3	ENSMUSG00000079298	ProperStrand	5	1	-inf
chr1	9337541	9337641	LINE	L1_Mus3	L1	chr1L1_Mus39337483	NonProperStrand	1	chr1	9337271	9337361	LTR	RLTR10A	ERVK	chr1RLTR10A9337066	NonProperStrand	1	1	-inf
chr15	52042499	52042589	LINE	L1_Mm	L1	chr15L1_Mm52041335	ProperStrand	2	chr1	180639828	180639928	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	62	2	-inf
chr4	85338951	85339010	lincRNA	Gm12680	intron	ENSMUSG00000087349	ProperStrand	49	chr2	33042120	33042196	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	1	-8.6232
chr10	97832763	97832853	LINE	L1_Mus1	L1	chr10L1_Mus197832550	NonProperStrand	1	chr10	97833029	97833129	LTR	RMER17A2	ERVK	chr10RMER17A297832929	NonProperStrand	1	1	-inf
chr10	39034496	39034586	DNA	URR1A	MER1_type	chr10URR1A39034478	NonProperStrand	1	chr10	39034117	39034217	LTR	MLT1F1	MaLR	chr10MLT1F139034137	NonProperStrand	1	1	-inf
chr17	39847847	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	84833265	84833315	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n84833196	NonProperStrand	1	1	-inf
chr13	97190573	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr14	24504559	24504607	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-3.6830
chr10	100171866	100171956	LINE	L1Md_F2	L1	chr10L1Md_F2100171797	ProperStrand	1	chr10	100171700	100171800	SINE	B4A	B4	chr10B4A100171644	NonProperStrand	1	1	-inf
chr5	33511035	33511135	LINE	L1MC3	L1	chr5L1MC333510876	NonProperStrand	69	chr8	84859771	84859861	protein_coding	Il15	intron	ENSMUSG00000031712	NonProperStrand	64	3	-20.3490
chr16	35981719	35981764	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr13	97190568	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.3323
chr1	135568102	135568180	LTR	MT2B2	ERVL	chr1MT2B2135568029	ProperStrand	1	chr1	135563395	135563432	SINE	ID_B1	B4	chr1ID_B1135563318	ProperStrand	1	1	-inf
chr8	8651294	8651343	protein_coding	Efnb2	intron	ENSMUSG00000001300	ProperStrand	23	chr2	5379298	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.4307
chr10	40258543	40258621	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	29144995	29145055	LTR	MTA_Mm	MaLR	chr2MTA_Mm29144743	NonProperStrand	2	2	-inf
chr8	106525624	106525728	DNA	URR1B	MER1_type	chr8URR1B106525610	NonProperStrand	1	chr8	106527036	106527089	SINE	B4	B4	chr8B4106526968	NonProperStrand	4	1	-inf
chr4	57951824	57956199	LINE	Lx4A	L1	chr4Lx4A57951189	NonProperStrand	7	chr4	57945163	57950889	SINE	B1_Mur2	Alu	chr4B1_Mur257950796	NonProperStrand	6	2	-inf
chr3	5301472	5301490	protein_coding	Zfhx4	intron	ENSMUSG00000025255	ProperStrand	6	chr12	81468335	81468416	protein_coding	Dcaf5	intron	ENSMUSG00000049106	ProperStrand	69	1	-16.5380
chr17	39846458	39846921	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	67789439	67793990	protein_coding	Cep76	intron	ENSMUSG00000073542	NonProperStrand	16	3	-3.8697
chr7	24493932	24494003	Other	RMER1B	Other	chr7RMER1B24493395	NonProperStrand	1	chr13	97190561	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr15	47539994	47540118	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr19	12682762	12682778	protein_coding	Gm4952	intron	ENSMUSG00000071633	NonProperStrand	3	1	-16.5459
chr1	87776936	87777065	LTR	IAPEY3-int	ERVK	chr1IAPEY3-int87772720	NonProperStrand	120	chr9	61628158	61628177	LTR	LTR85a	Gypsy?	chr9LTR85a61628134	ProperStrand	1	1	-inf
chr11	23421273	23426069	LTR	BGLII	ERVK	chr11BGLII23421216	ProperStrand	1	chr11	23420124	23421259	protein_coding	1700093K21Rik	utr5	ENSMUSG00000020286	NonProperStrand	8	1	-inf
chr13	23761120	23761166	LTR	RMER5	ERV1	chr13RMER523760834	NonProperStrand	13	chr17	39847160	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-4.4697
chr6	144415286	144415376	protein_coding	Sox5	intron	ENSMUSG00000041540	NonProperStrand	32	chr6	144469193	144469293	protein_coding	Sox5	intron	ENSMUSG00000041540	ProperStrand	44	1	-13.9193
chr4	132352772	132352794	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr12	85225358	85225412	protein_coding	Numb	intron	ENSMUSG00000021224	NonProperStrand	3	1	-16.1379
chr2	18162613	18162687	protein_coding	Dnajc1	intron	ENSMUSG00000026740	NonProperStrand	79	chr11	33405402	33405466	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-6.8958
chr7	125693231	125696550	protein_coding	Tmc7	intron	ENSMUSG00000042246	ProperStrand	40	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.7175
chr5	114852004	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chrX	106202891	106203274	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	1	-9.0523
chr11	75493860	75493932	protein_coding	Crk	intron	ENSMUSG00000017776	ProperStrand	72	chr19	42368675	42368742	protein_coding	Crtac1	intron	ENSMUSG00000042401	ProperStrand	106	1	-10.5123
chr12	83663339	83663439	Low_complexity	polypurine	Low_complexity	chr12polypurine83663346	ProperStrand	1	chr19	5798086	5798176	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr17	39847385	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	139409843	139409907	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n139409841	NonProperStrand	1	1	-inf
chr5	146261265	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr16	23111300	23111347	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-5.7948
chr1	167224953	167224991	SINE	B2_Mm2	B2	chr1B2_Mm2167224941	NonProperStrand	2	chr13	100773439	100773498	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	1	-20.6040
chr9	43235086	43235174	LINE	L1MA5	L1	chr9L1MA543234942	ProperStrand	2	chr9	43234058	43234110	LTR	MER21B	ERV1	chr9MER21B43233976	NonProperStrand	2	2	-inf
chr12	18015607	18015697	LTR	MTD	MaLR	chr12MTD18015349	ProperStrand	3	chr12	18015772	18015872	SINE	B1_Mus1	Alu	chr12B1_Mus118015704	NonProperStrand	2	2	-inf
chr11	33361512	33361589	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	chr16	43185612	43185679	pseudogene	Gm15712	.	ENSMUSG00000083827	ProperStrand	1	1	-inf
chr17	39847276	39847341	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	138289640	138289695	SINE	B1_Mm	Alu	chr5B1_Mm138289562	ProperStrand	1	1	-inf
chr1	52933602	52933630	protein_coding	Hibch	intron	ENSMUSG00000041426	NonProperStrand	34	chr1	52930003	52930083	pseudogene	Gm16107	.	ENSMUSG00000089802	ProperStrand	3	1	-19.2628
chr17	39847184	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	57521411	57529014	protein_coding	Cyp1a2	intron	ENSMUSG00000032310	NonProperStrand	7	1	-3.6430
chr2	35356866	35356966	LTR	ORR1A0	MaLR	chr2ORR1A035356807	NonProperStrand	1	chr2	44861520	44861610	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	1	-inf
chr13	96068100	96068125	LINE	L1_Mus4	L1	chr13L1_Mus496064165	NonProperStrand	1	chr16	33770567	33770678	protein_coding	Heg1	utr3	ENSMUSG00000075254	ProperStrand	40	1	-inf
chr1	149386140	149386230	LTR	RLTR25B	ERVK	chr1RLTR25B149386141	NonProperStrand	1	chr1	149386026	149386126	LTR	RMER6D	ERVK	chr1RMER6D149385919	ProperStrand	1	1	-inf
chr16	70295444	70295544	LINE	L2	L2	chr16L270295300	ProperStrand	1	chr16	70295603	70295693	LTR	MTEa	MaLR	chr16MTEa70295583	ProperStrand	1	1	-inf
chr4	32723525	32723598	protein_coding	Casp8ap2	intron	ENSMUSG00000028282	ProperStrand	52	chr9	110281288	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.8489
chr13	21780287	21780337	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr15	83149644	83149684	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-11.0075
chr9	123462078	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	93236858	93236928	protein_coding	Espnl	intron	ENSMUSG00000049515	ProperStrand	18	1	-3.2529
chr4	119197766	119197855	LINE	Lx8	L1	chr4Lx8119197696	ProperStrand	1	chr18	9446785	9446843	protein_coding	Ccny	intron	ENSMUSG00000024286	ProperStrand	60	1	-inf
chr16	26583203	26583293	protein_coding	Il1rap	intron	ENSMUSG00000022514	ProperStrand	3	chr16	38113539	38113639	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	96	1	-17.4336
chr4	99904793	99904810	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	chr2	5379248	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.7728
chr5	29736104	29748349	LINE	Lx	L1	chr5Lx29735871	NonProperStrand	1	chr9	95689037	95689166	protein_coding	Pls1	intron	ENSMUSG00000049493	NonProperStrand	16	1	-inf
chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr6	87980622	87980686	protein_coding	Rab7	intron	ENSMUSG00000079477	ProperStrand	10	1	-8.0770
chr2	61764957	61765030	LINE	L1_Mur3	L1	chr2L1_Mur361764811	NonProperStrand	4	chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-10.1399
chr12	59707633	59707733	LINE	L1Md_T	L1	chr12L1Md_T59702722	NonProperStrand	1	chr12	59708010	59708100	LINE	L1Md_T	L1	chr12L1Md_T59707875	NonProperStrand	1	1	-inf
chr9	5747054	5747125	Low_complexity	GA-rich	Low_complexity	chr9GA-rich5747003	NonProperStrand	2	chr3	88693990	88694060	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	66	2	-inf
chr7	122020214	122020279	DNA	Charlie10a	MER1_type	chr7Charlie10a122020230	NonProperStrand	2	chr7	122016477	122016533	Low_complexity	CT-rich	Low_complexity	chr7CT-rich122016446	NonProperStrand	1	1	-inf
chrX	60703740	60703758	LINE	L1Md_A	L1	chrXL1Md_A60700223	ProperStrand	1	chr17	39847736	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	32807621	32807771	protein_coding	Ppp1cb	intron	ENSMUSG00000014956	NonProperStrand	37	chr7	140870625	140870642	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	1	-13.1750
chr17	39845956	39846051	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	107249706	107249749	protein_coding	Pold3	intron	ENSMUSG00000030726	NonProperStrand	33	1	-3.0120
chr17	39847207	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	151380493	151380549	SINE	B2_Mm1t	B2	chr4B2_Mm1t151380375	ProperStrand	1	1	-inf
chr5	146261279	146261301	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr11	107234423	107234489	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-4.6565
chr16	48589256	48589349	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	chr5	145177413	145177439	protein_coding	Bri3	intron	ENSMUSG00000047843	ProperStrand	118	1	-12.5203
chr17	39846209	39848192	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	146261265	146261349	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	54	-8.8641
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr4	146514905	146515047	protein_coding	Gm13139	intron	ENSMUSG00000067916	ProperStrand	23	1	-8.4941
chr15	72914651	72914702	LTR	IAPEz-int	ERVK	chr15IAPEz-int72913891	ProperStrand	4	chr13	63248004	63248062	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	1	-14.5075
chr8	24044071	24044150	protein_coding	Myst3	intron	ENSMUSG00000031540	ProperStrand	9	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-9.8244
chr11	116569796	116569852	LTR	RMER16	ERVK	chr11RMER16116569683	NonProperStrand	7	chr11	116570227	116570315	LTR	RMER16	ERVK	chr11RMER16116570187	NonProperStrand	1	1	-inf
chr10	45212000	45212100	LINE	L1_Mur2	L1	chr10L1_Mur245211893	NonProperStrand	1	chr10	45211820	45211910	LINE	Lx6	L1	chr10Lx645209670	ProperStrand	1	1	-inf
chr11	45473333	45473423	LTR	IAP-d-int	ERVK	chr11IAP-d-int45473323	ProperStrand	1	chr11	45473515	45473615	LTR	IAP-d-int	ERVK	chr11IAP-d-int45473459	ProperStrand	1	1	-inf
chr5	144851328	144853485	LTR	RLTR10-int	ERVK	chr5RLTR10-int144852011	ProperStrand	3	chr5	144853517	144853569	LTR	RLTR10-int	ERVK	chr5RLTR10-int144853092	ProperStrand	2	2	-inf
chr9	123461905	123462168	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chrX	162776404	162817380	protein_coding	Gpm6b	intron	ENSMUSG00000031342	NonProperStrand	61	4	-5.4569
chr17	33954909	33954999	protein_coding	Kank3	exon	ENSMUSG00000042099	NonProperStrand	107	chr7	133037692	133037792	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-4.0744
chr17	39843438	39843482	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr2	169671884	169671975	protein_coding	Tshz2	intron	ENSMUSG00000047907	ProperStrand	9	1	-6.2068
chr17	24048145	24048245	LTR	RLTR10-int	ERVK	chr17RLTR10-int24047323	NonProperStrand	2	chr17	24048292	24048382	LTR	RLTR10A	ERVK	chr17RLTR10A24048234	NonProperStrand	2	2	-inf
chr7	28972635	28974191	LINE	L2	L2	chr7L228974126	NonProperStrand	17	chr6	30211404	30211479	protein_coding	Ube2h	intron	ENSMUSG00000039159	ProperStrand	50	1	-14.9580
chr7	12930793	12930851	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr18	35557109	35557157	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-7.8397
chr1	36427422	36427522	SINE	ID_B1	B4	chr1ID_B136427425	ProperStrand	1	chr1	36427672	36427762	SINE	ID_B1	B4	chr1ID_B136427608	ProperStrand	1	1	-inf
chrX	142372781	142372870	LINE	Lx4B	L1	chrXLx4B142372596	ProperStrand	2	chr17	39846472	39846505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr8	114819782	114819888	LTR	ORR1A2	MaLR	chr8ORR1A2114819561	ProperStrand	3	chr8	114816908	114816952	LTR	ORR1E	MaLR	chr8ORR1E114816637	NonProperStrand	5	1	-inf
chr13	64350414	64350514	lincRNA	1810034E14Rik	exon	ENSMUSG00000074861	ProperStrand	1	chr13	64349856	64349946	protein_coding	Cdc14b	intron	ENSMUSG00000033102	NonProperStrand	1	1	-inf
chr2	161123826	161123842	LTR	MER21B	ERV1	chr2MER21B161123531	NonProperStrand	5	chr18	83132201	83132219	protein_coding	Zfp516	intron	ENSMUSG00000058881	NonProperStrand	2	1	-23.2669
chrX	68787637	68787727	DNA	URR1B	MER1_type	chrXURR1B68787551	NonProperStrand	2	chrX	68787779	68787879	SINE	B1_Mm	Alu	chrXB1_Mm68787734	NonProperStrand	2	2	-inf
chr17	39847187	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	154460503	154460521	protein_coding	Cnksr2	intron	ENSMUSG00000025658	NonProperStrand	5	2	-7.5968
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr15	89135518	89135579	protein_coding-noncoding	Sbf1	utr3	ENSMUSG00000036529	ProperStrand	1	1	-inf
chr5	77313565	77313647	protein_coding-noncoding	Aasdh	utr3	ENSMUSG00000055923	NonProperStrand	1	chr5	77314075	77314143	protein_coding	Aasdh	intron	ENSMUSG00000055923	NonProperStrand	11	1	-inf
chr16	19441430	19441549	LINE	L1_Mus3	L1	chr16L1_Mus319439313	ProperStrand	1	chr7	18422536	18422573	LINE	L1Md_A	L1	chr7L1Md_A18417715	NonProperStrand	1	1	-inf
chrX	20849597	20849730	LINE	L1Md_F2	L1	chrXL1Md_F220845959	ProperStrand	1	chr17	39846471	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	1	-inf
chr6	88036305	88036338	protein_coding	Rpn1	intron	ENSMUSG00000030062	ProperStrand	10	chr11	88359701	88359723	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-9.8998
chr2	131294843	131294904	LINE	L1_Mur3	L1	chr2L1_Mur3131293566	NonProperStrand	4	chr3	146499990	146503306	LTR	RLTR20C	ERVK	chr3RLTR20C146502822	NonProperStrand	3	1	-inf
chr18	32861644	32862937	lincRNA	4930455D15Rik	intron	ENSMUSG00000085056	ProperStrand	8	chr9	65296821	65296940	protein_coding	Mtfmt	intron	ENSMUSG00000059183	ProperStrand	5	1	-22.1864
chrX	160807093	160807213	protein_coding	Pir	intron	ENSMUSG00000031379	NonProperStrand	7	chr12	102690345	102690371	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-12.1813
chr5	138187692	138190331	protein_coding	Tsc22d4	intron	ENSMUSG00000029723	ProperStrand	4	chr9	72665588	72665688	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	3	-inf
chr11	117707929	117708000	LTR	RLTR20B2	ERVK	chr11RLTR20B2117707926	ProperStrand	1	chr11	117708351	117708412	SINE	B4A	B4	chr11B4A117708331	ProperStrand	1	1	-inf
chr19	24294871	24294961	protein_coding	Tjp2	intron	ENSMUSG00000024812	NonProperStrand	8	chr19	32230557	32230657	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-14.2095
chr17	39847575	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	122683826	122683942	protein_coding	Hvcn1	intron	ENSMUSG00000064267	ProperStrand	2	1	-5.4040
chr11	86327824	86358256	protein_coding	Rps6kb1	utr3	ENSMUSG00000020516	ProperStrand	34	chr12	110693067	110695409	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	2	-16.2828
chr17	39847207	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	108236167	108237415	protein_coding-noncoding	Prpf38a	utr3	ENSMUSG00000063800	ProperStrand	5	1	-4.3348
chr3	86121686	86121774	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	chr11	73083080	73083098	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	1	-11.4971
chrX	144348129	144348198	LINE	L1Md_A	L1	chrXL1Md_A144345579	ProperStrand	9	chr5	147550528	147550588	protein_coding	Usp12	intron	ENSMUSG00000029640	NonProperStrand	11	1	-19.5805
chr8	69616373	69616473	LINE	L1Md_F2	L1	chr8L1Md_F269615572	NonProperStrand	8	chr8	69616472	69616563	LINE	Lx3A	L1	chr8Lx3A69616470	NonProperStrand	8	8	-inf
chr15	66765457	66765557	protein_coding-noncoding	Ndrg1	utr3	ENSMUSG00000005125	NonProperStrand	1	chr15	66765278	66765368	protein_coding	Ndrg1	intron	ENSMUSG00000005125	NonProperStrand	2	1	-inf
chr14	20499781	20499881	LTR	RLTR14-int	ERV1	chr14RLTR14-int20498074	ProperStrand	2	chr14	20500256	20500346	LTR	RLTR14-int	ERV1	chr14RLTR14-int20500255	ProperStrand	2	1	-19.8939
chr10	80809386	80809476	protein_coding-noncoding	Hmg20b	utr3	ENSMUSG00000020232	ProperStrand	4	chr10	80809259	80809360	protein_coding	Hmg20b	intron	ENSMUSG00000020232	ProperStrand	4	4	-inf
chr17	47267533	47267552	LTR	ORR1A4	MaLR	chr17ORR1A447267305	NonProperStrand	1	chr17	47257942	47258022	SINE	B3A	B2	chr17B3A47257860	ProperStrand	1	1	-inf
chr11	84829276	84829292	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr11	76564738	76564861	protein_coding	Gosr1	intron	ENSMUSG00000010392	ProperStrand	90	1	-11.5749
chr5	138321893	138322006	LINE	L1_Mus1	L1	chr5L1_Mus1138321915	NonProperStrand	2	chr5	138321770	138321875	SINE	B2_Mm1a	B2	chr5B2_Mm1a138321720	ProperStrand	2	2	-inf
chr14	31784548	31784608	protein_coding	Nek4	intron	ENSMUSG00000021918	NonProperStrand	10	chr14	31829883	31829933	protein_coding	Gnl3	intron	ENSMUSG00000042354	ProperStrand	7	1	-20.1042
chr2	23151113	23155756	LINE	L1Md_F3	L1	chr2L1Md_F323151457	NonProperStrand	3	chr17	39845903	39846003	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-7.9693
chr17	39846079	39846128	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	153228551	153228610	protein_coding	Asxl1	utr3	ENSMUSG00000042548	NonProperStrand	10	1	-5.3115
chr16	35981639	35981660	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr10	69961525	69961626	protein_coding	Fam13c	intron	ENSMUSG00000043259	ProperStrand	75	2	-14.9341
chr4	152113327	152113442	SINE	B4A	B4	chr4B4A152113293	ProperStrand	1	chr5	114852356	114852375	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-inf
chr4	50675784	50675884	LINE	Lx9	L1	chr4Lx950675384	ProperStrand	1	chr4	50676036	50676126	LINE	Lx9	L1	chr4Lx950675958	ProperStrand	1	1	-inf
chr11	95751678	95751746	protein_coding	B4galnt2	intron	ENSMUSG00000013418	NonProperStrand	47	chr6	134114410	134114502	protein_coding	Etv6	intron	ENSMUSG00000030199	ProperStrand	187	1	-10.2341
chr16	30542343	30542374	protein_coding-noncoding	Tmem44	utr3	ENSMUSG00000022537	ProperStrand	5	chr16	30543452	30543579	protein_coding	Tmem44	utr5	ENSMUSG00000022537	ProperStrand	25	1	-19.3499
chr6	72740124	72740185	SINE	RSINE1	B4	chr6RSINE172740055	NonProperStrand	1	chr6	72738631	72738684	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	1	-inf
chr18	12790240	12790294	protein_coding	Ttc39c	intron	ENSMUSG00000024424	NonProperStrand	39	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.8244
chr11	120571577	120571677	SINE	B1_Mur4	Alu	chr11B1_Mur4120571602	ProperStrand	4	chr11	120572717	120572807	protein_coding-noncoding	Stra13	utr3	ENSMUSG00000025144	ProperStrand	4	3	-inf
chr3	129817208	129817308	LINE	L1Md_A	L1	chr3L1Md_A129817232	ProperStrand	1	chr5	87700644	87700734	LTR	IAPEz-int	ERVK	chr5IAPEz-int87698567	NonProperStrand	1	1	-inf
chr13	97190597	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr8	106809345	106809443	protein_coding	Cmtm2a	intron	ENSMUSG00000074127	NonProperStrand	7	1	-9.4895
chr17	39847475	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	75001197	75001697	LTR	ORR1D1	MaLR	chr18ORR1D175001091	ProperStrand	3	2	-8.1061
chrX	166424254	166424344	protein_coding	Mid1	intron	ENSMUSG00000035299	ProperStrand	37	chrX	164994785	164994885	protein_coding	Frmpd4	intron	ENSMUSG00000049176	NonProperStrand	76	1	-12.5239
chr10	83392286	83392383	LTR	RMER17C-int	ERVK	chr10RMER17C-int83391239	ProperStrand	9	chr4	150350112	150350161	Simple_repeat	(TATG)n	Simple_repeat	chr4(TATG)n150350003	ProperStrand	1	1	-inf
chr19	29648311	29648355	protein_coding	C030046E11Rik	intron	ENSMUSG00000038658	NonProperStrand	23	chr15	83149705	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-12.2778
chr2	150427084	150427142	protein_coding	2310001A20Rik	intron	ENSMUSG00000033096	ProperStrand	5	chr5	131610476	131610501	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	1	-13.9451
chr1	178886356	178886456	protein_coding-noncoding	Sdccag8	utr5	ENSMUSG00000026504	ProperStrand	1	chr1	178885893	178885983	protein_coding	Sdccag8	intron	ENSMUSG00000026504	ProperStrand	9	1	-inf
chr5	48035384	48035461	LINE	L1_Mus3	L1	chr5L1_Mus348035175	NonProperStrand	1	chr5	48034910	48034963	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm48034595	NonProperStrand	1	1	-inf
chrX	73673884	73674026	LINE	L1_Mur2	L1	chrXL1_Mur273673023	ProperStrand	20	chr4	43492834	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-9.3062
chr12	111671939	111672257	LTR	RMER15	ERVL	chr12RMER15111671762	ProperStrand	5	chr17	39847142	39847194	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr14	83880668	83880758	LINE	Lx5	L1	chr14Lx583879520	NonProperStrand	1	chr14	83880973	83881073	LINE	Lx5	L1	chr14Lx583880872	NonProperStrand	1	1	-inf
chr14	50837169	50837445	LINE	L1Md_F2	L1	chr14L1Md_F250837329	ProperStrand	3	chr14	50837073	50837173	LINE	Lx3A	L1	chr14Lx3A50836343	NonProperStrand	4	2	-inf
chr2	37576858	37576954	SINE	B3A	B2	chr2B3A37576884	NonProperStrand	1	chr2	37576418	37576470	SINE	MIRb	MIR	chr2MIRb37576364	ProperStrand	1	1	-inf
chr11	115415859	115416024	LTR	RMER4A	ERVK	chr11RMER4A115415689	ProperStrand	2	chr13	29961454	29961474	LTR	ORR1D2	MaLR	chr13ORR1D229961172	NonProperStrand	1	1	-inf
chr17	39843765	39843811	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	155329034	155329091	protein_coding	Ube2j2	intron	ENSMUSG00000023286	NonProperStrand	17	1	-5.3771
chr10	40258589	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chrX	150654028	150654128	LINE	L1_Mus3	L1	chrXL1_Mus3150653502	NonProperStrand	5	2	-16.8892
chr13	9834367	9834402	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr7	3704420	3704710	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	64	1	-8.9784
chr17	39846441	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	56903242	56903267	Simple_repeat	(TG)n	Simple_repeat	chr14(TG)n56903223	ProperStrand	1	1	-inf
chr15	23931731	23931831	LINE	L1_Mur1	L1	chr15L1_Mur123931658	NonProperStrand	1	chr15	23931421	23931511	LTR	RMER15	ERVL	chr15RMER1523931440	ProperStrand	1	1	-inf
chr1	23943968	23944068	LTR	BGLII	ERVK	chr1BGLII23943961	NonProperStrand	1	chr1	23943440	23943530	LTR	MT2B	ERVL	chr1MT2B23943436	NonProperStrand	1	1	-inf
chr4	34881461	34881579	LINE	Lx7	L1	chr4Lx734881304	ProperStrand	5	chr4	34864352	34864384	SINE	B1_Mus1	Alu	chr4B1_Mus134864251	NonProperStrand	2	2	-inf
chr8	71378808	71378898	LTR	RMER19B	ERVK	chr8RMER19B71378826	NonProperStrand	2	chr8	71378707	71378807	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n71378699	NonProperStrand	2	2	-inf
chr10	85009230	85009254	protein_coding	Btbd11	exon	ENSMUSG00000020042	ProperStrand	82	chr1	118291863	118291950	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	NonProperStrand	63	1	-11.2961
chr1	159744825	159744885	LINE	Lx8	L1	chr1Lx8159744677	ProperStrand	1	chr19	46081549	46081598	lincRNA	4930505N22Rik	intron	ENSMUSG00000090325	ProperStrand	37	1	-inf
chr19	10698126	10698199	protein_coding	Ddb1	intron	ENSMUSG00000024740	ProperStrand	19	chr16	11613754	11613818	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-11.3767
chr3	53086766	53086833	LINE	Lx6	L1	chr3Lx653086758	ProperStrand	1	chr3	96220794	96220861	LTR	RLTR33	ERVK	chr3RLTR3396220444	ProperStrand	5	1	-inf
chr13	3565555	3565649	protein_coding	BC016423	utr3	ENSMUSG00000033799	NonProperStrand	13	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-14.4582
chr5	146261268	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr10	79094550	79097556	protein_coding	Shc2	intron	ENSMUSG00000020312	ProperStrand	8	1	-12.0079
chrX	105087166	105087266	LINE	L1VL2	L1	chrXL1VL2105087102	NonProperStrand	6	chrX	105087022	105087112	SINE	B1_Mus2	Alu	chrXB1_Mus2105086957	NonProperStrand	5	5	-inf
chr13	49502213	49502303	LINE	L1MC2	L1	chr13L1MC249502201	ProperStrand	1	chr13	49502096	49502196	Simple_repeat	(TTTC)n	Simple_repeat	chr13(TTTC)n49502097	NonProperStrand	1	1	-inf
chr6	65835114	65835200	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	chr9	78203206	78203261	protein_coding	Gsta2	intron	ENSMUSG00000057933	NonProperStrand	15	1	-12.3778
chr10	81182217	81182309	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	chr10	94778338	94778364	protein_coding	Cradd	intron	ENSMUSG00000045867	NonProperStrand	36	1	-10.8828
chr15	15470665	15470755	LINE	Lx2	L1	chr15Lx215470598	NonProperStrand	1	chr15	15470808	15470908	LINE	Lx2	L1	chr15Lx215470780	ProperStrand	1	1	-inf
chr15	27994908	27994970	LINE	L1Md_F2	L1	chr15L1Md_F227994766	NonProperStrand	3	chr17	39847863	39847895	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39846485	39846556	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	5126623	5126651	antisense	Gm15938	.	ENSMUSG00000087532	ProperStrand	1	1	-inf
chr6	142838366	142838425	protein_coding	St8sia1	intron	ENSMUSG00000030283	ProperStrand	47	chr12	81494029	81494078	protein_coding	Dcaf5	intron	ENSMUSG00000049106	NonProperStrand	3	1	-18.8823
chr9	43212536	43212558	LINE	L1MDa	L1	chr9L1MDa43212158	NonProperStrand	1	chr9	43213132	43213217	LTR	ORR1C2	MaLR	chr9ORR1C243213067	NonProperStrand	1	1	-inf
chrX	87238364	87238396	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr13	44899682	44899724	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	1	-6.3096
chr8	120570718	120570790	LINE	L1Md_F2	L1	chr8L1Md_F2120567887	ProperStrand	32	chr6	3201509	3201571	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-4.0529
chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	chr2	26463916	26463944	protein_coding	Gm20532	intron	ENSMUSG00000092356	NonProperStrand	60	1	-9.1391
chr16	17525276	17525310	protein_coding-noncoding	Lztr1	utr5	ENSMUSG00000022761	ProperStrand	2	chr13	49197926	49198025	protein_coding	Wnk2	intron	ENSMUSG00000037989	NonProperStrand	22	1	-21.6660
chr12	54696812	54696902	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr9	40228618	40228718	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-6.4540
chr1	29848748	29848848	LINE	L1MC1	L1	chr1L1MC129848685	ProperStrand	1	chr1	29849008	29849098	LINE	L1MC1	L1	chr1L1MC129849006	ProperStrand	1	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr16	38590970	38591029	protein_coding	Tmem39a	intron	ENSMUSG00000002845	ProperStrand	41	1	-11.0470
chr4	117947341	117947434	protein_coding	Ptprf	intron	ENSMUSG00000033295	ProperStrand	98	chr16	24984418	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-8.9613
chr11	68902398	68903230	protein_coding-noncoding	Vamp2	utr5	ENSMUSG00000020894	ProperStrand	20	chr9	123462137	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr1	158282649	158282749	LTR	MTD	MaLR	chr1MTD158282615	ProperStrand	1	chr1	170353192	170353282	protein_coding	Pbx1	intron	ENSMUSG00000052534	NonProperStrand	4	1	-inf
chr17	39847611	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	101204822	101204898	LTR	ORR1D1	MaLR	chrXORR1D1101204528	ProperStrand	1	1	-inf
chr2	154503432	154503482	protein_coding	Chmp4b	intron	ENSMUSG00000038467	ProperStrand	81	chr16	23110835	23110935	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-11.2889
chr6	65117309	65117409	LINE	L1_Mur3	L1	chr6L1_Mur365117282	NonProperStrand	1	chr6	65116705	65116795	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n65116694	ProperStrand	1	1	-inf
chr18	63720230	63720293	LINE	L1Md_F2	L1	chr18L1Md_F263720180	ProperStrand	1	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr13	89984626	89984660	protein_coding	Xrcc4	intron	ENSMUSG00000021615	ProperStrand	57	chr18	34946652	34947976	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-11.4255
chr9	21820575	21821459	protein_coding	Elavl3	utr3	ENSMUSG00000003410	ProperStrand	162	chr13	97190561	97190597	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.2523
chr9	57021927	57021956	LINE	Lx9	L1	chr9Lx957021900	NonProperStrand	1	chr9	57021373	57021478	LTR	RMER19C	ERVK	chr9RMER19C57020841	NonProperStrand	1	1	-inf
chr17	39848722	39848783	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	27774478	27774530	SINE	ID_B1	B4	chr17ID_B127774460	NonProperStrand	1	1	-inf
chr4	132533362	132533378	protein_coding	Fgr	utr5	ENSMUSG00000028874	NonProperStrand	17	chr5	17776752	17776778	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-12.6662
chr14	21207060	21207137	protein_coding	Dnajc9	intron	ENSMUSG00000021811	NonProperStrand	2	chr11	3254785	3254848	sense_intronic	Gm11948	.	ENSMUSG00000087055	ProperStrand	4	1	-22.1285
chr18	10657708	10657798	protein_coding	Abhd3	intron	ENSMUSG00000002475	ProperStrand	12	chr13	9362601	9362701	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	2	-20.5263
chr9	13290127	13290196	LTR	RMER15	ERVL	chr9RMER1513290093	NonProperStrand	2	chr1	134780488	134780548	protein_coding	Lrrn2	intron	ENSMUSG00000026443	ProperStrand	2	1	-19.8939
chr2	157457098	157457198	LINE	L1M4	L1	chr2L1M4157456984	ProperStrand	3	chr2	157455697	157457096	LTR	MTEb	MaLR	chr2MTEb157455709	ProperStrand	2	2	-inf
chr11	3139194	3139292	protein_coding	Eif4enif1	intron	ENSMUSG00000020454	ProperStrand	62	chr5	14226415	14226431	protein_coding	Sema3e	exon	ENSMUSG00000063531	ProperStrand	15	1	-14.7792
chr17	39848506	39848597	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr19	60168418	60168449	LINE	L1Md_F2	L1	chr19L1Md_F260168220	NonProperStrand	1	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr8	106880799	106880892	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	1	-4.4576
chr19	5801552	5801651	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr4	135340571	135340848	protein_coding	Myom3	intron	ENSMUSG00000037139	NonProperStrand	91	1	-3.6557
chr18	16380024	16380124	LINE	Lx6	L1	chr18Lx616379885	NonProperStrand	1	chr18	16380573	16380663	SINE	RSINE1	B4	chr18RSINE116380507	ProperStrand	1	1	-inf
chr10	40258536	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-5.8352
chrX	106200763	106200859	protein_coding	Hmgn5	exon	ENSMUSG00000031245	NonProperStrand	68	chr11	68356262	68356320	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-9.8663
chr3	79582268	79582358	LTR	MTC-int	MaLR	chr3MTC-int79582276	ProperStrand	1	chr3	79582071	79582171	LTR	MTC	MaLR	chr3MTC79581926	ProperStrand	1	1	-inf
chr17	39846293	39847175	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	122123773	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	51	-17.9794
chr4	109964362	109964440	protein_coding	Elavl4	intron	ENSMUSG00000028546	NonProperStrand	51	chr3	104824385	104824442	protein_coding	Cttnbp2nl	intron	ENSMUSG00000062127	ProperStrand	31	1	-13.6870
chr9	123462138	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	124508353	124508370	protein_coding	Mtf1	intron	ENSMUSG00000028890	ProperStrand	2	1	-8.0983
chr17	4082107	4082139	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr6	41969363	41969381	LTR	ETnERV-int	ERVK	chr6ETnERV-int41967195	NonProperStrand	2	1	-15.1159
chr8	69917984	69935802	SINE	B1F	Alu	chr8B1F69917978	ProperStrand	9	chr8	69917781	69917985	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n69917760	NonProperStrand	8	8	-inf
chr3	101045583	101045683	LINE	L1MEd	L1	chr3L1MEd101045558	ProperStrand	4	chr3	101045735	101050165	SINE	B1_Mur1	Alu	chr3B1_Mur1101050048	NonProperStrand	4	4	-inf
chr11	54487244	54503567	protein_coding	Rapgef6	intron	ENSMUSG00000037533	ProperStrand	26	chr8	124728479	126360907	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	2	-13.7266
chr6	3201427	3201537	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	155540735	155577009	protein_coding	Agrn	intron	ENSMUSG00000041936	NonProperStrand	37	2	-6.4036
chr5	30060659	30060759	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	chrY	783122	783524	protein_coding	Usp9y	intron	ENSMUSG00000069044	ProperStrand	23	2	-inf
chr6	21959338	21959428	protein_coding-noncoding	A430107O13Rik	utr5	ENSMUSG00000062980	ProperStrand	1	chr6	21959659	21959759	protein_coding	A430107O13Rik	intron	ENSMUSG00000062980	ProperStrand	20	1	-inf
chr13	114063528	114063628	LTR	IAPEz-int	ERVK	chr13IAPEz-int114063503	ProperStrand	37	chr13	114063413	114063503	LTR	IAPLTR1a_Mm	ERVK	chr13IAPLTR1a_Mm114063151	ProperStrand	1	1	-inf
chr6	128278258	128278279	protein_coding	Tulp3	intron	ENSMUSG00000001521	NonProperStrand	2	chr15	81783095	81785898	protein_coding	Pmm1	intron	ENSMUSG00000022474	NonProperStrand	2	1	-19.8939
chr16	4777386	4777445	protein_coding	5730403B10Rik	intron	ENSMUSG00000004071	ProperStrand	45	chr9	118674952	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.5396
chr17	56065207	56065267	LINE	L1Md_F	L1	chr17L1Md_F56062996	ProperStrand	4	chr6	3201427	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	2	-13.8207
chrX	145959543	145959633	LTR	MT2B	ERVL	chrXMT2B145959540	ProperStrand	1	chrX	145959782	145959882	Simple_repeat	(GA)n	Simple_repeat	chrX(GA)n145959698	ProperStrand	1	1	-inf
chr2	166206924	166207002	lincRNA	Gm14268	exon	ENSMUSG00000087617	NonProperStrand	4	chr6	43478839	43478914	protein_coding	Tpk1	intron	ENSMUSG00000029735	ProperStrand	82	1	-17.1150
chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	chr15	80078505	80078587	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-10.0231
chr11	95990446	95990522	SINE	PB1D7	Alu	chr11PB1D795990384	NonProperStrand	1	chr5	146210331	146210415	protein_coding	Cyp3a16	intron	ENSMUSG00000038656	ProperStrand	17	1	-inf
chr8	76699084	76699111	LINE	L1Md_F2	L1	chr8L1Md_F276696862	ProperStrand	1	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr15	5933169	5933259	LINE	L1_Mm	L1	chr15L1_Mm5932090	ProperStrand	1	chr15	8047027	8047127	protein_coding	Wdr70	intron	ENSMUSG00000039828	NonProperStrand	6	1	-inf
chr8	4633479	4633526	LTR	RLTR15	ERVK	chr8RLTR154633262	ProperStrand	1	chr3	100632616	100632676	protein_coding	Vtcn1	intron	ENSMUSG00000051076	NonProperStrand	32	1	-inf
chr6	85949277	85949368	LTR	MERVL_2A-int	ERVL	chr6MERVL_2A-int85949251	NonProperStrand	1	chr4	53860712	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-inf
chr6	145963052	145963072	LINE	L2	L2	chr6L2145962930	ProperStrand	1	chr11	23403634	23403874	SINE	B3	B2	chr11B323403804	ProperStrand	3	1	-inf
chr10	88160933	88160996	LINE	Lx7	L1	chr10Lx788160190	NonProperStrand	3	chr17	39847276	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr5	139383807	139383838	LTR	ORR1B1	MaLR	chr5ORR1B1139383468	NonProperStrand	1	chr5	139382185	139382277	LTR	ORR1C1	MaLR	chr5ORR1C1139382163	NonProperStrand	2	1	-inf
chrX	48584588	48584667	LINE	Lx3B	L1	chrXLx3B48584493	ProperStrand	1	chrX	48584130	48584180	Simple_repeat	(TC)n	Simple_repeat	chrX(TC)n48583997	NonProperStrand	1	1	-inf
chr9	65196571	65196615	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr4	119135821	119135899	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	2	-10.9260
chr5	110039455	110039501	LTR	MYSERV16_I-int	ERVK	chr5MYSERV16_I-int110038972	ProperStrand	3	chrX	13164854	13165369	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	2	-inf
chr9	123461930	123461964	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	135381763	135381787	protein_coding	Wbscr28	intron	ENSMUSG00000040576	ProperStrand	9	1	-4.5963
chr13	70179251	70179341	Simple_repeat	(CAA)n	Simple_repeat	chr13(CAA)n70179247	NonProperStrand	1	chr13	70179133	70179233	Simple_repeat	(CACAA)n	Simple_repeat	chr13(CACAA)n70179069	NonProperStrand	1	1	-inf
chr5	83014315	83014405	LINE	Lx3C	L1	chr5Lx3C83014276	ProperStrand	1	chr5	83014515	83014615	LTR	ORR1A3-int	MaLR	chr5ORR1A3-int83014470	NonProperStrand	1	1	-inf
chr7	116272481	116272552	SINE	ID_B1	B4	chr7ID_B1116272418	NonProperStrand	3	chr7	116301464	116301508	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	1	-16.3279
chr2	52987282	52987364	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	179	chr13	97190554	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.0732
chr17	39847863	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	128618510	128618526	protein_coding	Adc	intron	ENSMUSG00000028789	NonProperStrand	3	1	-4.3512
chr6	74342813	74342903	LINE	L1_Mm	L1	chr6L1_Mm74342485	ProperStrand	1	chr6	74343075	74343175	LINE	L1_Mus1	L1	chr6L1_Mus174343015	ProperStrand	1	1	-inf
chr15	75895899	75896333	protein_coding	Scrib	intron	ENSMUSG00000022568	ProperStrand	50	chr4	115653281	115653312	protein_coding	Faah	intron	ENSMUSG00000034171	NonProperStrand	4	1	-18.2997
chr12	73162956	73163042	LINE	L1MA4A	L1	chr12L1MA4A73162767	ProperStrand	1	chr13	9834314	9834369	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	1	-inf
chr13	59623483	59623564	protein_coding	Agtpbp1	intron	ENSMUSG00000021557	NonProperStrand	51	chr12	117674299	117674341	protein_coding	Ncapg2	intron	ENSMUSG00000042029	ProperStrand	22	1	-14.3873
chr17	39847584	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	49806616	49818037	LTR	RLTR25A	ERVK	chr7RLTR25A49806550	NonProperStrand	1	1	-inf
chr18	46487975	46488065	LTR	RLTR23	ERV1	chr18RLTR2346487984	NonProperStrand	1	chr18	46487466	46487566	SINE	B1_Mm	Alu	chr18B1_Mm46487434	ProperStrand	1	1	-inf
chr7	35020967	35021726	lincRNA	Gm12758	intron	ENSMUSG00000085105	ProperStrand	5	chr7	34969517	34971683	protein_coding	Pdcd2l	utr3	ENSMUSG00000002635	NonProperStrand	16	3	-inf
chr6	109558064	109558158	LINE	Lx5	L1	chr6Lx5109557324	NonProperStrand	1	chr16	19883804	19883821	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-inf
chrX	101447598	101447688	LINE	Lx7	L1	chrXLx7101447139	ProperStrand	5	chr19	23092372	23092472	LTR	IAPEY3_LTR	ERVK	chr19IAPEY3_LTR23092365	NonProperStrand	1	1	-inf
chr9	7930495	7930595	SINE	B1_Mur4	Alu	chr9B1_Mur47930491	ProperStrand	1	chr9	7930339	7930429	SINE	B1_Mus1	Alu	chr9B1_Mus17930324	ProperStrand	1	1	-inf
chr17	46152870	46152923	LINE	L2b	L2	chr17L2b46152778	ProperStrand	1	chr9	123461884	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	117343229	117343329	LTR	LTR85a	Gypsy?	chr10LTR85a117343228	NonProperStrand	1	chr10	117341924	117342014	SINE	B1_Mur3	Alu	chr10B1_Mur3117341873	NonProperStrand	1	1	-inf
chr6	49236483	49236600	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr4	84122247	84122268	protein_coding	Bnc2	intron	ENSMUSG00000028487	ProperStrand	55	1	-9.5041
chr9	109660011	109660111	LTR	IAP-d-int	ERVK	chr9IAP-d-int109659988	ProperStrand	1	chr9	109621777	109621867	protein_coding	Fbxw26	intron	ENSMUSG00000059547	ProperStrand	1	1	-inf
chr2	126643262	126643362	protein_coding-noncoding	Trpm7	utr3	ENSMUSG00000027365	ProperStrand	4	chr2	126643375	126643465	protein_coding	Trpm7	intron	ENSMUSG00000027365	ProperStrand	25	4	-inf
chr19	6954264	6954445	LTR	RLTR19-int	ERVK	chr19RLTR19-int6953775	NonProperStrand	2	chr19	6954459	6954864	SINE	B1_Mus1	Alu	chr19B1_Mus16954639	NonProperStrand	2	2	-inf
chr19	3727795	3727895	SINE	B2_Mm2	B2	chr19B2_Mm23727809	NonProperStrand	1	chr19	3727666	3727756	SINE	B3	B2	chr19B33727656	NonProperStrand	1	1	-inf
chr1	174707520	174707620	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n174707476	ProperStrand	1	chr5	131735735	131735824	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	1	-inf
chr17	39847222	39847340	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	104361925	104361967	SINE	B3A	B2	chr11B3A104361897	NonProperStrand	1	1	-inf
chr4	82985541	82985641	LINE	L1MB4	L1	chr4L1MB482985352	NonProperStrand	1	chr4	82985817	82985907	LINE	L1MB4	L1	chr4L1MB482985745	NonProperStrand	1	1	-inf
chr1	15935565	15935665	LINE	L1_Mus3	L1	chr1L1_Mus315935552	NonProperStrand	2	chr1	15935245	15935335	SINE	B1_Mus1	Alu	chr1B1_Mus115935180	NonProperStrand	1	1	-inf
chr8	83670784	83670965	LINE	L1_Mur1	L1	chr8L1_Mur183670704	ProperStrand	2	chr17	39847665	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr13	9834325	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr2	91897453	91897529	lincRNA	Gm13780	intron	ENSMUSG00000087197	NonProperStrand	50	1	-9.4742
chr17	39847026	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	108555967	108556009	miRNA	CT571271.1	.	ENSMUSG00000080354	NonProperStrand	1	1	-inf
chr8	70030688	70031508	LTR	RMER3D-int	ERVK	chr8RMER3D-int70029286	ProperStrand	5	chr9	123461931	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr6	113152303	113152419	DNA	URR1A	MER1_type	chr6URR1A113152306	NonProperStrand	1	chr17	39848182	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr9	121350366	121350403	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	242	chr2	10363608	10363692	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	NonProperStrand	43	1	-9.8982
chr7	110436589	110436689	LINE	L1Md_A	L1	chr7L1Md_A110431177	NonProperStrand	2	chr7	110437044	110437134	LINE	L1Md_A	L1	chr7L1Md_A110436950	NonProperStrand	1	1	-inf
chr17	39846718	39846758	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	108679723	108679792	protein_coding	Fndc7	intron	ENSMUSG00000045326	ProperStrand	3	1	-4.3017
chr9	36255436	36255526	LINE	Lx7	L1	chr9Lx736254862	NonProperStrand	1	chr9	36255840	36255940	LINE	Lx7	L1	chr9Lx736255705	NonProperStrand	1	1	-inf
chr8	84846420	84846482	LINE	L1Md_F2	L1	chr8L1Md_F284845460	NonProperStrand	20	chr11	87426782	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-14.0591
chr3	154586740	154586787	protein_coding	Tnni3k	intron	ENSMUSG00000040086	ProperStrand	25	chr8	95712077	95712174	protein_coding	Ces1d	intron	ENSMUSG00000056973	NonProperStrand	52	1	-14.0836
chr9	123462076	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	151425436	151425497	protein_coding	Nol9	intron	ENSMUSG00000028948	NonProperStrand	10	1	-4.3847
chr17	39848486	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	100936473	100936503	Simple_repeat	(GAA)n	Simple_repeat	chr3(GAA)n100936148	NonProperStrand	2	2	-inf
chr13	67717136	67717225	LTR	RMER12	ERVK	chr13RMER1267717152	ProperStrand	1	chr12	67665420	67665520	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr10	7771927	7772027	LINE	L1_Mur3	L1	chr10L1_Mur37771341	NonProperStrand	1	chr17	39847766	39847856	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	146260993	146261235	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	19	-21.3813
chr3	133488358	133488396	LINE	L1_Mus2	L1	chr3L1_Mus2133487590	ProperStrand	6	chr8	31149886	31149953	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	1	-16.3297
chr10	121410582	121410598	protein_coding	Srgap1	intron	ENSMUSG00000020121	ProperStrand	69	chr1	153468915	153468932	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	1	-10.5419
chr15	82898684	82898757	SINE	B1_Mm	Alu	chr15B1_Mm82898620	NonProperStrand	5	chr15	82946987	82947071	protein_coding	Rrp7a	utr3	ENSMUSG00000018040	ProperStrand	48	1	-17.6708
chr5	35567749	35567794	LINE	L1Md_F3	L1	chr5L1Md_F335567654	ProperStrand	1	chr5	35568157	35568201	SINE	B3	B2	chr5B335568018	NonProperStrand	1	1	-inf
chr10	99029666	99029774	LINE	Lx7	L1	chr10Lx799029486	ProperStrand	2	chr17	39847804	39847835	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chr5	146261164	146261197	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	47539994	47540119	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	2	-5.6573
chr15	61987545	61987568	lincRNA	Pvt1	intron	ENSMUSG00000072566	NonProperStrand	20	chr2	5379242	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.7119
chr15	85086270	85109799	protein_coding	Fbln1	intron	ENSMUSG00000006369	NonProperStrand	34	chr9	123461930	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.8532
chrX	105971245	105971310	protein_coding	Brwd3	intron	ENSMUSG00000063663	ProperStrand	28	chr5	138296703	138296795	protein_coding	Pilrb1	intron	ENSMUSG00000066684	NonProperStrand	29	1	-15.0362
chr8	78809983	78812983	LINE	L1_Mus2	L1	chr8L1_Mus278809581	NonProperStrand	1	chr17	39848152	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr11	101316244	101316310	protein_coding	Ifi35	intron	ENSMUSG00000010358	ProperStrand	3	chr11	101322402	101322478	protein_coding	Vat1	intron	ENSMUSG00000034993	NonProperStrand	9	1	-21.6921
chr4	16730673	16730773	LINE	L1_Rod	L1	chr4L1_Rod16730377	NonProperStrand	1	chr4	16730803	16730893	LTR	RMER19B	ERVK	chr4RMER19B16730814	ProperStrand	1	1	-inf
chr7	109640707	109640780	SINE	B3	B2	chr7B3109640646	ProperStrand	1	chr7	109640917	109640978	SINE	B3A	B2	chr7B3A109640795	ProperStrand	1	1	-inf
chr13	24832025	24836024	SINE	PB1	Alu	chr13PB124831969	ProperStrand	1	chr13	24831808	24831877	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n24831827	ProperStrand	1	1	-inf
chr1	147193130	147193220	LINE	Lx6	L1	chr1Lx6147193143	NonProperStrand	1	chr1	147192985	147193085	LTR	RMER13B	ERVK	chr1RMER13B147192234	NonProperStrand	1	1	-inf
chr17	45587452	45587507	protein_coding	Spats1	intron	ENSMUSG00000023935	ProperStrand	92	chr3	85619674	85619758	protein_coding	Glt28d2	intron	ENSMUSG00000031286	NonProperStrand	29	1	-12.6328
chr4	44119479	44119569	lincRNA	Gm12503	exon	ENSMUSG00000087326	NonProperStrand	2	chr9	53878457	53878557	protein_coding	Tnfaip8l3	intron	ENSMUSG00000074345	NonProperStrand	3	2	-inf
chr1	191588237	191588291	protein_coding	Ptpn14	intron	ENSMUSG00000026604	ProperStrand	53	chr7	64208164	64208220	protein_coding	Gabrg3	intron	ENSMUSG00000055026	NonProperStrand	33	1	-13.4819
chr3	63996864	63998641	LINE	Lx2	L1	chr3Lx263996561	ProperStrand	1	chr2	5379275	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr1	100180181	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr3	51199743	51199783	protein_coding	4930583H14Rik	intron	ENSMUSG00000037161	NonProperStrand	2	1	-17.9868
chr17	28329018	28329424	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	108	chr6	32792446	32792480	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-8.3920
chr6	29470247	29470317	LTR	ORR1B2	MaLR	chr6ORR1B229469982	ProperStrand	7	chr9	40214641	40214721	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-12.4988
chr1	135057708	135057824	SINE	B1_Mur4	Alu	chr1B1_Mur4135057655	ProperStrand	1	chr10	77259379	77259418	protein_coding	Gm7137	intron	ENSMUSG00000090579	NonProperStrand	14	1	-inf
chr17	39845917	39845947	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	29712765	29712805	protein_coding	Actn4	intron	ENSMUSG00000054808	ProperStrand	2	1	-9.0607
chr7	121801459	121801549	LTR	RMER15	ERVL	chr7RMER15121801336	ProperStrand	1	chr9	19657600	19657700	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	26	1	-inf
chr10	83391897	83391987	LTR	RMER17C-int	ERVK	chr10RMER17C-int83391239	ProperStrand	9	chr12	67660774	67660873	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-15.4680
chr5	110716918	110717008	protein_coding	Pole	intron	ENSMUSG00000007080	NonProperStrand	46	chr9	110043147	110043247	protein_coding	Smarcc1	intron	ENSMUSG00000032481	ProperStrand	174	1	-10.4216
chr19	5796987	5797019	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr4	25682397	25682508	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-4.3461
chr17	39847736	39847760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	101779203	101779277	LTR	MLT1C	MaLR	chr7MLT1C101779187	NonProperStrand	2	1	-5.4040
chr7	7207553	7209809	LINE	L1Md_F2	L1	chr7L1Md_F27207483	NonProperStrand	2	chr17	39847181	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-inf
chr11	116472248	116472314	protein_coding	Rhbdf2	intron	ENSMUSG00000020806	ProperStrand	55	chr2	5379271	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.7153
chr10	75859420	75859461	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	78	chr12	54696812	54696854	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-9.8525
chr17	39843856	39843934	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr9	15286643	15286710	LTR	MTEa	MaLR	chr9MTEa15286547	ProperStrand	1	1	-inf
chr2	119637049	119637181	protein_coding	Tyro3	intron	ENSMUSG00000027298	ProperStrand	6	chr13	97190561	97190582	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr8	31149862	31149888	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr9	40803583	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-6.9434
chr17	39846353	39847164	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	168601390	168601412	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	6	-7.0283
chr10	90725856	90725946	LTR	MTD	MaLR	chr10MTD90725834	ProperStrand	1	chr10	90725721	90725821	LTR	ORR1B1	MaLR	chr10ORR1B190725631	NonProperStrand	1	1	-inf
chr9	66067875	66067975	protein_coding	Dapk2	intron	ENSMUSG00000032380	NonProperStrand	28	chr9	65744636	65744726	protein_coding	2810417H13Rik	intron	ENSMUSG00000040204	ProperStrand	1	1	-inf
chr18	67646017	67648148	LINE	L1_Mur3	L1	chr18L1_Mur367645862	ProperStrand	2	chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr2	143946798	143946846	SINE	MIRc	MIR	chr2MIRc143946806	NonProperStrand	1	chr1	128145735	128145789	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	170	1	-inf
chr8	69793781	69793950	LTR	ORR1A2	MaLR	chr8ORR1A269793627	NonProperStrand	1	chr1	84809599	84809674	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	1	-inf
chr4	44902944	44902978	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	chr12	76453173	76453287	protein_coding	Rhoj	intron	ENSMUSG00000046768	ProperStrand	46	1	-11.6137
chr3	84033061	84033154	protein_coding	Trim2	intron	ENSMUSG00000027993	ProperStrand	141	chr7	116448698	116448716	protein_coding	Stk33	intron	ENSMUSG00000031027	NonProperStrand	13	1	-13.4261
chr7	28919050	28962146	protein_coding	Fbl	intron	ENSMUSG00000046865	NonProperStrand	25	chr7	28918756	28938446	protein_coding	9530053A07Rik	intron	ENSMUSG00000078776	NonProperStrand	96	8	-19.9737
chr4	57910217	57910307	SINE	B4	B4	chr4B457910224	ProperStrand	1	chr4	57909707	57909807	protein_coding	Akap2	utr3	ENSMUSG00000038729	NonProperStrand	4	1	-inf
chr13	21170034	21170100	LINE	L1_Rod	L1	chr13L1_Rod21169895	ProperStrand	2	chr17	39846597	39846653	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr2	22744852	22744878	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	44473368	44473384	protein_coding	Prom1	intron	ENSMUSG00000029086	ProperStrand	1	1	-inf
chr8	3408672	3408701	protein_coding	Arhgef18	intron	ENSMUSG00000004568	ProperStrand	170	chr11	98030295	98030415	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	1	-8.5955
chr7	130747546	130747596	LINE	L1Md_A	L1	chr7L1Md_A130747231	NonProperStrand	7	chr5	146261117	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-9.4279
chr2	130706503	130706593	processed_transcript	A730017L22Rik	.	ENSMUSG00000085566	NonProperStrand	14	chr2	130706632	130706732	pseudogene	Gm14048	.	ENSMUSG00000080989	ProperStrand	4	4	-inf
chr12	73325762	73325800	protein_coding	Rtn1	intron	ENSMUSG00000021087	NonProperStrand	36	chr2	63870890	63871001	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-12.5533
chr10	46578710	46578810	LINE	L1Md_F2	L1	chr10L1Md_F246578687	NonProperStrand	1	chr3	122464592	122464682	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-inf
chr17	39846818	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	135725883	135725963	protein_coding	Fzd9	exon	ENSMUSG00000049551	NonProperStrand	1	1	-inf
chr3	88170674	88170882	protein_coding-noncoding	Paqr6	utr5	ENSMUSG00000041423	ProperStrand	4	chr3	88170578	88170989	protein_coding	Paqr6	intron	ENSMUSG00000041423	ProperStrand	4	3	-inf
chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	135931052	135931134	SINE	B3A	B2	chr4B3A135931044	ProperStrand	1	1	-inf
chr17	4082366	4082456	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr15	4742019	4742119	protein_coding	C6	intron	ENSMUSG00000022181	ProperStrand	4	1	-13.3302
chr17	39846286	39846371	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	3553599	3553674	LTR	ORR1A1	MaLR	chr6ORR1A13553601	NonProperStrand	1	1	-inf
chr17	39843888	39847626	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr12	81933143	81933279	protein_coding	4933426M11Rik	intron	ENSMUSG00000021133	ProperStrand	48	1	-3.3840
chr2	93679616	93679635	protein_coding-noncoding	Accs	utr3	ENSMUSG00000040272	ProperStrand	3	chr12	41438375	41438445	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-15.0054
chr14	40965622	40965722	LTR	BGLII_B	ERVK	chr14BGLII_B40965494	ProperStrand	2	chr5	8367359	8367449	protein_coding	Adam22	intron	ENSMUSG00000040537	NonProperStrand	16	2	-inf
chr5	123808215	123808263	protein_coding	Bcl7a	utr3	ENSMUSG00000029438	ProperStrand	19	chr9	110305395	110305433	protein_coding	Ptpn23	intron	ENSMUSG00000036057	NonProperStrand	3	1	-19.6111
chr7	102267460	102267550	DNA	Tigger9b	MER2_type	chr7Tigger9b102267246	NonProperStrand	1	chr7	102267571	102267671	LTR	RMER19A	ERVK	chr7RMER19A102267527	NonProperStrand	5	1	-inf
chr8	104386909	104386973	LINE	L1_Mus3	L1	chr8L1_Mus3104386632	NonProperStrand	4	chr8	124256940	124257014	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	3	-23.2469
chr17	39846438	39846505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	115590426	115590457	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n115589666	NonProperStrand	3	1	-4.3017
chr11	83490116	83490144	Low_complexity	CT-rich	Low_complexity	chr11CT-rich83490093	ProperStrand	1	chr2	5379271	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr9	123462119	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr10	107229165	107229183	protein_coding	Otogl	intron	ENSMUSG00000091455	NonProperStrand	5	1	-5.8308
chr6	3201474	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr19	37207552	37207668	protein_coding	Cpeb3	intron	ENSMUSG00000039652	NonProperStrand	28	1	-4.3080
chr1	66769339	66769362	protein_coding	1110028C15Rik	intron	ENSMUSG00000026004	NonProperStrand	13	chr1	66756692	66756746	protein_coding	Rpe	intron	ENSMUSG00000026005	ProperStrand	8	1	-19.7796
chr6	65919200	65919238	LTR	LTR40a	ERVL	chr6LTR40a65919077	NonProperStrand	1	chr6	125106645	125106732	protein_coding	Iffo1	intron	ENSMUSG00000038271	ProperStrand	44	1	-inf
chr17	39846751	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	61387502	61391211	protein_coding	C1qtnf9	exon	ENSMUSG00000071347	NonProperStrand	4	1	-3.6552
chr13	100652743	100652775	LINE	L1M3e	L1	chr13L1M3e100652687	ProperStrand	2	chr13	100653536	100653649	SINE	ID_B1	B4	chr13ID_B1100653497	ProperStrand	2	2	-inf
chr12	80184893	80192451	SINE	PB1D7	Alu	chr12PB1D780192365	ProperStrand	3	chr12	80183545	80184828	protein_coding	Pigh	utr3	ENSMUSG00000021120	ProperStrand	16	3	-inf
chr17	35329190	35329280	SINE	B2_Mm1a	B2	chr17B2_Mm1a35329137	NonProperStrand	1	chr17	35329481	35329581	SINE	B2_Mm2	B2	chr17B2_Mm235329408	NonProperStrand	1	1	-inf
chr19	5801013	5801113	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr1	51865894	51865984	protein_coding	Myo1b	intron	ENSMUSG00000018417	ProperStrand	53	1	-4.6769
chr6	3201474	3201564	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	110178863	110178963	SINE	B4A	B4	chr9B4A110178825	NonProperStrand	1	1	-inf
chr1	133654686	133654723	protein_coding	Slc26a9	intron	ENSMUSG00000042268	NonProperStrand	64	chr9	110537359	110537457	protein_coding	Nbeal2	intron	ENSMUSG00000056724	NonProperStrand	24	1	-13.7505
chr7	80040495	80040561	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n80040503	ProperStrand	1	chr17	24720880	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-inf
chr7	80033107	80033129	LTR	LTRIS5	ERV1	chr7LTRIS580032739	ProperStrand	3	chr17	70853863	70853895	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-12.5468
chr10	81304858	81304968	SINE	B1_Mus2	Alu	chr10B1_Mus281304801	NonProperStrand	1	chr10	94789926	94789942	SINE	PB1D10	Alu	chr10PB1D1094789915	NonProperStrand	4	1	-inf
chrX	87238359	87238421	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr9	123461790	123462171	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	7	-3.3659
chr14	119159881	119159899	LINE	L1Md_F3	L1	chr14L1Md_F3119156775	ProperStrand	3	chr17	39847846	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr6	38346830	38346930	protein_coding	Ttc26	intron	ENSMUSG00000056832	ProperStrand	1	chr6	38346435	38346525	pseudogene	Gm16563	.	ENSMUSG00000089905	ProperStrand	1	1	-inf
chr17	39847767	39847857	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	141755373	141755473	protein_coding	Slco1a4	utr3	ENSMUSG00000030237	ProperStrand	2	2	-inf
chr14	77545592	77545692	DNA	URR1B	MER1_type	chr14URR1B77545476	ProperStrand	1	chr17	39847889	39847979	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	45600984	45601057	protein_coding	Spats1	intron	ENSMUSG00000023935	ProperStrand	92	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.1361
chr15	74957831	74958283	LINE	L1VL4	L1	chr15L1VL474957037	NonProperStrand	6	chr2	130195263	130195314	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	46	1	-17.4103
chr7	140136324	140136349	protein_coding	Zranb1	intron	ENSMUSG00000030967	ProperStrand	28	chr4	34556801	34556910	protein_coding	Orc3	intron	ENSMUSG00000040044	NonProperStrand	17	1	-16.1350
chr13	119337147	119337237	LINE	L1_Rod	L1	chr13L1_Rod119336997	NonProperStrand	1	chr13	119336766	119336865	LTR	RLTR11B	ERVK	chr13RLTR11B119336545	ProperStrand	1	1	-inf
chr8	106876402	106876503	protein_coding	Gm9853	utr3	ENSMUSG00000051554	ProperStrand	8	chr8	106879261	106879301	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	2	-21.9323
chr5	4099124	4099244	protein_coding	Cyp51	exon	ENSMUSG00000001467	ProperStrand	21	chr14	31014206	31014604	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	1	-11.2405
chr14	72556894	72556933	LTR	MTB_Mm	MaLR	chr14MTB_Mm72556865	ProperStrand	2	chr13	29937212	29937325	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	2	-inf
chr2	22744847	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	110162963	110162994	protein_coding	Cspg5	intron	ENSMUSG00000032482	ProperStrand	12	1	-10.0719
chr13	44869590	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr5	145181528	145181600	protein_coding	Bri3	intron	ENSMUSG00000047843	ProperStrand	118	1	-3.2319
chr4	150141668	150141690	LTR	MTE2b	MaLR	chr4MTE2b150141376	NonProperStrand	1	chr15	80077809	80078031	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	1	-inf
chr9	27045072	27045097	LTR	RMER13A	ERVK	chr9RMER13A27044753	NonProperStrand	1	chr13	35867054	35867158	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-inf
chr12	87309972	87315336	lincRNA	Gm17691	intron	ENSMUSG00000091798	ProperStrand	21	chr12	87314152	87336080	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	132	2	-19.7485
chr9	123462117	123462145	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	65092517	65092533	protein_coding	Hpgds	intron	ENSMUSG00000029919	ProperStrand	3	1	-7.0114
chr17	39847844	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	117963897	117963915	protein_coding	Rnf141	intron	ENSMUSG00000030788	ProperStrand	1	1	-inf
chr1	105689702	105689760	LINE	Lx5	L1	chr1Lx5105689321	ProperStrand	1	chr17	66376755	66376855	protein_coding	Ankrd12	intron	ENSMUSG00000034647	ProperStrand	228	1	-inf
chrX	78515897	78515997	LINE	Lx	L1	chrXLx78514727	ProperStrand	4	chrX	78516048	78516138	LINE	Lx9	L1	chrXLx978516040	ProperStrand	2	2	-inf
chr17	39848598	39848694	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	67342509	67342526	protein_coding	Gas7	intron	ENSMUSG00000033066	NonProperStrand	4	1	-6.9461
chr5	110701775	110703543	protein_coding	Pxmp2	utr3	ENSMUSG00000029499	ProperStrand	17	chr5	110698830	110698878	protein_coding	Pgam5	utr5	ENSMUSG00000029500	ProperStrand	15	1	-17.4380
chr14	21335153	21335235	protein_coding-noncoding	Ppp3cb	utr3	ENSMUSG00000021816	NonProperStrand	1	chr14	21351589	21351657	protein_coding	Ppp3cb	intron	ENSMUSG00000021816	NonProperStrand	22	1	-inf
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	90034697	90038861	protein_coding	Jtb	intron	ENSMUSG00000027937	NonProperStrand	3	1	-4.3017
chr7	139289836	139289922	protein_coding	Cpxm2	intron	ENSMUSG00000030862	NonProperStrand	17	chr3	8862983	8863048	protein_coding	Mrps28	intron	ENSMUSG00000040269	ProperStrand	70	2	-22.3670
chr17	39847008	39847051	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	76360417	76360470	protein_coding	Fam83b	intron	ENSMUSG00000032358	NonProperStrand	5	1	-3.1907
chr17	39847844	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	45325216	45325234	SINE	B4A	B4	chr11B4A45325034	ProperStrand	3	1	-4.3512
chr6	144925727	144925752	LINE	L1Md_A	L1	chr6L1Md_A144923562	NonProperStrand	1	chr14	18269271	18269948	LTR	ORR1A1	MaLR	chr14ORR1A118268996	NonProperStrand	26	1	-inf
chr1	118681506	118681545	LINE	L1_Mus1	L1	chr1L1_Mus1118680975	NonProperStrand	9	chr13	44869574	44869644	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.2984
chr6	126836319	126840511	protein_coding	Dyrk4	intron	ENSMUSG00000030345	ProperStrand	11	chr8	119905987	119906003	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-13.7191
chr8	32002206	32002263	LINE	Lx7	L1	chr8Lx732000950	NonProperStrand	1	chr17	39846775	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	92851512	92851612	LINE	L1_Rod	L1	chr15L1_Rod92850623	NonProperStrand	1	chr15	92851971	92852061	LINE	Lx9	L1	chr15Lx992851700	NonProperStrand	1	1	-inf
chr12	102415677	102415777	LINE	Lx3_Mus	L1	chr12Lx3_Mus102415313	ProperStrand	2	chr12	102415807	102415897	SINE	B1_Mus1	Alu	chr12B1_Mus1102415756	ProperStrand	2	2	-inf
chr5	139248156	139248501	protein_coding	Fam20c	intron	ENSMUSG00000025854	ProperStrand	78	chr17	13720416	13720516	protein_coding	Tcte2	intron	ENSMUSG00000038347	ProperStrand	59	1	-11.5287
chr13	55346908	55351728	protein_coding	Nsd1	exon	ENSMUSG00000021488	NonProperStrand	62	chr9	123462078	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-3.7651
chr6	3201470	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	62934398	62944074	protein_coding	Rnaseh2b	intron	ENSMUSG00000021932	ProperStrand	49	1	-3.2597
chr12	41372056	41372156	protein_coding	Dock4	intron	ENSMUSG00000035954	NonProperStrand	15	chr1	63231126	63231216	protein_coding	Gpr1	intron	ENSMUSG00000046856	NonProperStrand	66	2	-20.7889
chr6	119821782	119821833	LINE	L1_Mur3	L1	chr6L1_Mur3119821762	NonProperStrand	1	chr10	80156386	80156468	protein_coding	Mob3a	intron	ENSMUSG00000003348	NonProperStrand	48	1	-inf
chr3	88972777	88972877	protein_coding-noncoding	Clk2	utr5	ENSMUSG00000068917	ProperStrand	2	chr3	88972709	88972799	protein_coding	Clk2	exon	ENSMUSG00000068917	ProperStrand	1	1	-inf
chr10	40228231	40228331	LINE	L1_Mus3	L1	chr10L1_Mus340228255	NonProperStrand	1	chr12	76783014	76783104	SINE	B1_Mus1	Alu	chr12B1_Mus176782969	ProperStrand	1	1	-inf
chr2	178234453	178234543	LTR	RMER17C	ERVK	chr2RMER17C178234441	ProperStrand	1	chr2	44861514	44861614	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	1	-inf
chr11	32574085	32574143	protein_coding	Fbxw11	intron	ENSMUSG00000020271	ProperStrand	39	chr11	88470973	88471007	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-7.1189
chr16	26910259	26910359	LTR	MT2A	ERVL	chr16MT2A26910285	ProperStrand	1	chr16	26910380	26910470	LTR	ORR1A3-int	MaLR	chr16ORR1A3-int26910401	ProperStrand	1	1	-inf
chr16	32616870	32617171	protein_coding-noncoding	Tfrc	utr5	ENSMUSG00000022797	ProperStrand	1	chr2	27361583	27361602	protein_coding	Brd3	intron	ENSMUSG00000026918	ProperStrand	76	1	-inf
chr13	21931167	21931207	LTR	RLTR15	ERVK	chr13RLTR1521931097	NonProperStrand	3	chr11	93899719	93899791	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	1	-17.8877
chr5	143036559	143036663	Low_complexity	GA-rich	Low_complexity	chr5GA-rich143036588	NonProperStrand	1	chr5	143039779	143039825	protein_coding	Mmd2	utr3	ENSMUSG00000039533	ProperStrand	23	1	-inf
chr4	134581261	134581341	SINE	MIRb	MIR	chr4MIRb134581227	ProperStrand	1	chr9	123462036	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	111456041	111456081	Simple_repeat	(T)n	Simple_repeat	chr13(T)n111456047	NonProperStrand	1	chr13	44869578	44869628	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr5	33514035	33514104	DNA	Charlie25	MER1_type	chr5Charlie2533513897	ProperStrand	10	chr5	33517143	33517226	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	1	-12.8102
chr1	161035848	161035913	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr11	88561542	88561590	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-6.9240
chr17	31984920	31985005	protein_coding	Sik1	exon	ENSMUSG00000024042	ProperStrand	14	chr2	121701475	121701544	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-14.4576
chr10	127211478	127211504	protein_coding	Rdh9	intron	ENSMUSG00000056148	NonProperStrand	6	chr8	95734059	95734104	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	55	1	-17.0031
chr11	97781645	97781693	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	25	chr17	32146520	32147009	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	105	1	-12.6711
chr19	53342111	53342211	LINE	L1MB8	L1	chr19L1MB853342041	ProperStrand	1	chr19	53341701	53341791	SINE	B3A	B2	chr19B3A53341682	ProperStrand	3	1	-inf
chr11	75751903	75751932	protein_coding	Rph3al	utr5	ENSMUSG00000020847	NonProperStrand	157	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-7.2208
chr16	5497640	5497740	DNA	RCHARR1	MER1_type	chr16RCHARR15497561	NonProperStrand	1	chr16	5497430	5497520	SINE	B1_Mur4	Alu	chr16B1_Mur45497394	NonProperStrand	1	1	-inf
chr11	20012331	20012386	protein_coding	Actr2	intron	ENSMUSG00000020152	ProperStrand	1	chr4	139130938	139130985	protein_coding	Iffo2	exon	ENSMUSG00000041025	NonProperStrand	59	1	-inf
chr12	98779186	98779257	LINE	Lx7	L1	chr12Lx798779061	NonProperStrand	1	chr7	100928340	100928373	Simple_repeat	(TA)n	Simple_repeat	chr7(TA)n100928328	NonProperStrand	1	1	-inf
chr14	103111174	103111264	LTR	MLT2B3	ERVL	chr14MLT2B3103111065	ProperStrand	1	chr14	103111318	103111418	SINE	B1_Mur2	Alu	chr14B1_Mur2103111325	ProperStrand	1	1	-inf
chr12	98858817	98859967	LINE	L1Md_T	L1	chr12L1Md_T98854467	NonProperStrand	2	chr17	39847187	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr15	62112287	62112313	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr11	69669686	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-3.3545
chr17	4082184	4082274	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr16	11488949	11489049	protein_coding	Snx29	intron	ENSMUSG00000071669	NonProperStrand	9	1	-11.5389
chr12	70985794	70985873	protein_coding	Map4k5	intron	ENSMUSG00000034761	NonProperStrand	24	chr2	32945911	32946105	protein_coding	Garnl3	intron	ENSMUSG00000038860	ProperStrand	98	1	-12.8935
chr6	50463780	50463870	LTR	ORR1A1-int	MaLR	chr6ORR1A1-int50462136	NonProperStrand	1	chr6	50463909	50464009	LTR	ORR1A1	MaLR	chr6ORR1A150463917	NonProperStrand	1	1	-inf
chr15	99603003	99603021	antisense	Gm17058	.	ENSMUSG00000090406	NonProperStrand	10	chrX	160597374	160597501	protein_coding	Ace2	intron	ENSMUSG00000015405	ProperStrand	10	1	-19.1789
chr12	4394656	4394683	misc_RNA	7SK	.	ENSMUSG00000084597	ProperStrand	1	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr9	123461876	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	71672329	71672384	protein_coding	Fn1	intron	ENSMUSG00000026193	NonProperStrand	8	1	-4.8360
chr3	41594494	41594740	LINE	L1Md_F2	L1	chr3L1Md_F241593460	ProperStrand	28	chr3	41595154	41595975	LINE	L1Md_F2	L1	chr3L1Md_F241594750	ProperStrand	40	2	-inf
chr17	39846499	39846552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	90087715	90089797	SINE	B2_Mm2	B2	chr3B2_Mm290088174	NonProperStrand	1	1	-inf
chr7	113241255	113241322	LINE	Lx	L1	chr7Lx113237792	ProperStrand	9	chr5	66499670	66499727	protein_coding	Rbm47	intron	ENSMUSG00000070780	ProperStrand	141	1	-14.1968
chr13	97190575	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr15	53312686	53312773	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	2	-3.3193
chr1	100180178	100180218	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr18	67290163	67290249	protein_coding	Gnal	intron	ENSMUSG00000024524	ProperStrand	146	1	-8.8821
chr4	91258271	91258305	LTR	ORR1E	MaLR	chr4ORR1E91257998	NonProperStrand	2	chr17	33958927	33958962	protein_coding-noncoding	Kank3	utr5	ENSMUSG00000042099	ProperStrand	1	1	-inf
chr3	130725469	130725587	SINE	B2_Mm1a	B2	chr3B2_Mm1a130725486	NonProperStrand	1	chr11	95576627	95576666	protein_coding	Zfp652	intron	ENSMUSG00000075595	NonProperStrand	12	1	-inf
chr1	59654482	59654523	protein_coding	Gm973	intron	ENSMUSG00000047361	NonProperStrand	30	chr11	35929661	35929692	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	2	-15.4738
chr5	146261266	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	104061545	104061607	protein_coding	Dnajc13	intron	ENSMUSG00000032560	ProperStrand	36	1	-8.9031
chr17	39847690	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	118152702	118152759	LTR	RLTR27	ERVK	chr7RLTR27118152710	ProperStrand	1	1	-inf
chr8	69872685	69872725	LTR	RMER16-int	ERVK	chr8RMER16-int69872118	NonProperStrand	1	chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	92643034	92643134	LTR	ORR1A2	MaLR	chr14ORR1A292643053	NonProperStrand	1	chr14	92643565	92643655	Simple_repeat	(TAGA)n	Simple_repeat	chr14(TAGA)n92643483	NonProperStrand	1	1	-inf
chr19	25620890	25620980	protein_coding	Dmrt1	intron	ENSMUSG00000024837	ProperStrand	24	chr19	25480483	25480583	protein_coding	Kank1	intron	ENSMUSG00000032702	NonProperStrand	11	1	-17.4015
chr9	40471633	40471723	LTR	MTEb	MaLR	chr9MTEb40471456	ProperStrand	1	chr9	40471242	40471342	SINE	B1_Mur3	Alu	chr9B1_Mur340471261	ProperStrand	1	1	-inf
chr10	62620645	62620735	protein_coding	Mypn	intron	ENSMUSG00000020067	ProperStrand	87	chr10	62509244	62509344	protein_coding	Pbld2	intron	ENSMUSG00000020068	ProperStrand	1	1	-inf
chr11	72735808	72735899	protein_coding-noncoding	Zzef1	utr5	ENSMUSG00000055670	ProperStrand	2	chr11	72735919	72736019	protein_coding	Zzef1	intron	ENSMUSG00000055670	ProperStrand	78	2	-inf
chr6	39420290	39420348	protein_coding	Dennd2a	exon	ENSMUSG00000038456	ProperStrand	103	chr1	172506774	172506835	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	169	1	-8.8618
chr4	133746259	133746288	SINE	B2_Mm2	B2	chr4B2_Mm2133746168	NonProperStrand	1	chr4	133746515	133746577	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n133746531	NonProperStrand	1	1	-inf
chr5	132458578	132458710	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr12	76928397	76928419	protein_coding	Syne2	intron	ENSMUSG00000063450	NonProperStrand	141	1	-5.5242
chr16	47057473	47057490	LTR	MLT1D	MaLR	chr16MLT1D47057343	NonProperStrand	16	chr2	5379230	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	4	-20.8507
chr17	39847526	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	70304646	70304760	SINE	RSINE1	B4	chr4RSINE170304651	NonProperStrand	1	1	-inf
chr17	39848252	39848330	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	72315092	72315165	lincRNA	D230017M19Rik	intron	ENSMUSG00000085769	ProperStrand	23	1	-3.1127
chr6	118520267	118520361	LTR	IAPEz-int	ERVK	chr6IAPEz-int118519969	NonProperStrand	2	chr6	118520848	118520894	LTR	IAPEz-int	ERVK	chr6IAPEz-int118520712	NonProperStrand	2	2	-inf
chr17	39846603	39846666	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	85459246	85459952	SINE	B4	B4	chr6B485459191	ProperStrand	2	1	-5.3533
chr7	46796156	46796232	LTR	ORR1E	MaLR	chr7ORR1E46795938	ProperStrand	2	chr4	100616996	100617016	protein_coding	Cachd1	intron	ENSMUSG00000028532	ProperStrand	12	1	-inf
chr8	80383648	80383738	LINE	L1VL4	L1	chr8L1VL480383438	NonProperStrand	1	chr8	80384039	80384139	LTR	MT2B	ERVL	chr8MT2B80383965	NonProperStrand	1	1	-inf
chr3	137651217	137651317	LINE	L1MA4	L1	chr3L1MA4137651173	ProperStrand	1	chr3	137651641	137651731	SINE	B1_Mm	Alu	chr3B1_Mm137651626	ProperStrand	1	1	-inf
chr14	32335831	32335899	SINE	B1_Mm	Alu	chr14B1_Mm32335766	NonProperStrand	1	chr11	33159959	33160380	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-inf
chr14	68039838	68039870	protein_coding	Ebf2	intron	ENSMUSG00000022053	ProperStrand	8	chr6	119664629	119664671	protein_coding	Erc1	intron	ENSMUSG00000030172	ProperStrand	98	1	-15.1837
chr19	14472854	14472912	LTR	RMER13B	ERVK	chr19RMER13B14472762	ProperStrand	1	chr19	14475547	14475641	SINE	B2_Mm2	B2	chr19B2_Mm214475563	NonProperStrand	1	1	-inf
chr17	33924239	33924265	LTR	MTE2a	MaLR	chr17MTE2a33924183	ProperStrand	2	chr17	33920838	33920949	processed_transcript	4931413I07Rik	.	ENSMUSG00000092602	NonProperStrand	3	2	-inf
chr3	95538526	95538616	protein_coding	Ecm1	intron	ENSMUSG00000028108	ProperStrand	1	chr3	156927845	156927945	protein_coding	Negr1	intron	ENSMUSG00000040037	ProperStrand	24	1	-inf
chr18	24804301	24804391	LINE	L1_Mur3	L1	chr18L1_Mur324803475	NonProperStrand	7	chr18	24804406	24804506	LTR	MTB	MaLR	chr18MTB24804417	ProperStrand	2	2	-inf
chr8	124844787	124844885	protein_coding	Zfpm1	intron	ENSMUSG00000049577	NonProperStrand	51	chrX	50563621	50563641	protein_coding	Plac1	intron	ENSMUSG00000061082	NonProperStrand	12	1	-15.6414
chr12	80243400	80243437	protein_coding	Arg2	intron	ENSMUSG00000021125	NonProperStrand	175	chr5	131647386	131647453	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	1	-6.6503
chr6	94278712	94278761	LINE	Lx7	L1	chr6Lx794278396	NonProperStrand	1	chr17	39843480	39843519	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39847170	39847228	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	38686628	38686645	protein_coding	Muted	intron	ENSMUSG00000038982	ProperStrand	4	1	-4.8204
chr12	19304167	19304254	LINE	Lx4B	L1	chr12Lx4B19303427	NonProperStrand	2	chr12	19305107	19305167	LTR	ORR1D-int	MaLR	chr12ORR1D-int19304767	ProperStrand	2	1	-19.8939
chr11	88999479	88999569	SINE	B3A	B2	chr11B3A88999355	NonProperStrand	1	chr11	88999580	88999680	SINE	ID_B1	B4	chr11ID_B188999587	NonProperStrand	28	1	-inf
chr9	110281285	110281331	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr13	12430930	12431010	protein_coding	Actn2	intron	ENSMUSG00000052374	NonProperStrand	37	1	-8.5321
chr4	89156542	89156585	SINE	PB1D7	Alu	chr4PB1D789156538	NonProperStrand	1	chr9	123461931	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	74229915	74230061	LINE	L1_Mm	L1	chrXL1_Mm74229343	ProperStrand	5	chr4	40757776	40757855	protein_coding	B4galt1	intron	ENSMUSG00000028413	ProperStrand	8	1	-20.8574
chr11	75394980	75395045	SINE	B1_Mur4	Alu	chr11B1_Mur475394995	ProperStrand	1	chr11	75394719	75394760	SINE	B1_Mus1	Alu	chr11B1_Mus175394708	ProperStrand	1	1	-inf
chr2	128151714	128151789	lincRNA	Gm14005	intron	ENSMUSG00000074813	NonProperStrand	116	chr10	116520790	116520856	protein_coding	Frs2	intron	ENSMUSG00000020170	ProperStrand	47	1	-11.1905
chr10	60777497	60777531	LTR	RLTR11B	ERVK	chr10RLTR11B60777473	ProperStrand	1	chr17	39847735	39847779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	150320796	150320922	SINE	B4	B4	chr4B4150320683	NonProperStrand	1	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-inf
chr9	114554645	114554702	LTR	RLTR25A	ERVK	chr9RLTR25A114554657	ProperStrand	1	chr9	114539359	114539414	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-inf
chr9	120574100	120574225	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120574039	ProperStrand	43	chr9	120574229	120574432	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120574258	ProperStrand	26	21	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr1	77411303	77411435	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	1	-7.5187
chr17	45028233	45028323	protein_coding	Supt3h	intron	ENSMUSG00000038954	NonProperStrand	6	chr17	44799207	44799307	protein_coding	Runx2	intron	ENSMUSG00000039153	ProperStrand	9	1	-inf
chr12	66727070	66727089	LINE	Lx3A	L1	chr12Lx3A66726477	ProperStrand	1	chr14	77666353	77666388	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	1	-inf
chr3	86328763	86328882	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-6.1977
chr12	108783533	108783645	LINE	L1ME1	L1	chr12L1ME1108783516	ProperStrand	1	chr9	110281304	110281344	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr6	67214732	67214803	SINE	MIR	MIR	chr6MIR67214680	NonProperStrand	1	chr19	23952913	23952967	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	1	-inf
chr17	39846774	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	106754112	106754130	protein_coding-noncoding	Cyb5rl	utr3	ENSMUSG00000028621	ProperStrand	1	1	-inf
chr4	108297857	108297947	protein_coding	Cc2d1b	intron	ENSMUSG00000028582	NonProperStrand	10	chr4	108297718	108297818	protein_coding	AL626783.1	utr5	ENSMUSG00000090599	ProperStrand	9	5	-inf
chr6	121029596	121029686	protein_coding	Mical3	intron	ENSMUSG00000003178	ProperStrand	108	chr12	54696792	54696892	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-9.2007
chr14	25699509	25699599	LINE	L1M5	L1	chr14L1M525699534	NonProperStrand	1	chr14	25700224	25700324	LINE	L1MD	L1	chr14L1MD25699812	NonProperStrand	9	1	-inf
chr8	24613827	24613917	LTR	RLTR24	ERV1	chr8RLTR2424613827	ProperStrand	1	chr8	24613963	24614063	SINE	B2_Mm2	B2	chr8B2_Mm224613913	NonProperStrand	1	1	-inf
chr8	114991303	114991395	LINE	Lx3_Mus	L1	chr8Lx3_Mus114991252	NonProperStrand	3	chr8	114991407	114991507	LINE	Lx3_Mus	L1	chr8Lx3_Mus114991252	ProperStrand	1	1	-inf
chr17	39845304	39845398	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	89084767	89084795	LINE	L1Md_F3	L1	chr9L1Md_F389083535	ProperStrand	3	2	-14.0590
chr8	114842600	114842700	SINE	B4	B4	chr8B4114842587	ProperStrand	3	chr8	114842486	114842576	SINE	ID_B1	B4	chr8ID_B1114842466	ProperStrand	3	3	-inf
chr4	43492784	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr9	42978270	42979410	protein_coding	Pou2f3	intron	ENSMUSG00000032015	ProperStrand	43	1	-7.7581
chr17	4082194	4082261	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr3	103970629	103970693	protein_coding	Magi3	intron	ENSMUSG00000052539	NonProperStrand	69	1	-7.3825
chr4	101251109	101251199	protein_coding	Dnajc6	intron	ENSMUSG00000028528	NonProperStrand	58	chr18	10151074	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	4	-inf
chr2	75696723	75696782	protein_coding	Agps	intron	ENSMUSG00000042410	NonProperStrand	122	chr6	80625894	80625913	protein_coding	Lrrtm4	intron	ENSMUSG00000052581	NonProperStrand	16	1	-13.2854
chr11	6418102	6418267	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	chr8	119946580	119946662	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-9.4154
chr6	118630280	118630296	protein_coding	Cacna1c	intron	ENSMUSG00000051331	NonProperStrand	17	chr2	31195926	31195985	protein_coding	Hmcn2	intron	ENSMUSG00000055632	ProperStrand	328	1	-11.1788
chr17	39847249	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	76563067	76563173	LTR	RLTR18-int	ERVK	chr5RLTR18-int76563040	NonProperStrand	2	2	-inf
chr15	93252041	93252147	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	chr18	36454257	36454294	protein_coding	Pura	utr3	ENSMUSG00000043991	NonProperStrand	11	1	-15.6793
chr2	109122351	109122441	protein_coding	Kif18a	intron	ENSMUSG00000027115	NonProperStrand	5	chr2	109120029	109120129	protein_coding	Mettl15	intron	ENSMUSG00000057234	ProperStrand	13	3	-inf
chr6	125496982	125497072	protein_coding	Vwf	utr5	ENSMUSG00000001930	ProperStrand	14	chr17	78947268	78947368	protein_coding	Vit	intron	ENSMUSG00000024076	NonProperStrand	35	1	-16.0681
chr17	39847341	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	30071062	30071297	LTR	MTE-int	MaLR	chr2MTE-int30071041	NonProperStrand	9	2	-3.9821
chrX	39373294	39373384	SINE	B2_Mm1t	B2	chrXB2_Mm1t39373294	ProperStrand	1	chr1	15827144	15827244	protein_coding	Terf1	intron	ENSMUSG00000025925	ProperStrand	66	1	-inf
chr17	39847477	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	119135095	119135122	SINE	ID_B1	B4	chr2ID_B1119135048	ProperStrand	1	1	-inf
chr4	121146243	121146313	LINE	L1Md_F2	L1	chr4L1Md_F2121143725	ProperStrand	5	chr17	39846352	39846400	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr6	88014092	88014182	LTR	MTD	MaLR	chr6MTD88014111	NonProperStrand	2	chr6	88013935	88014035	LTR	RLTR14	ERV1	chr6RLTR1488013660	ProperStrand	2	2	-inf
chr7	46850187	46851883	LINE	L1_Mus1	L1	chr7L1_Mus146850082	ProperStrand	37	chr17	39847345	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	5	-3.3483
chr3	138792292	138792363	LINE	Lx9	L1	chr3Lx9138792261	NonProperStrand	1	chr5	4084061	4084124	protein_coding	Cyp51	intron	ENSMUSG00000001467	ProperStrand	21	1	-inf
chr6	71433618	71433666	LTR	MTC	MaLR	chr6MTC71433488	NonProperStrand	1	chr9	123461884	123461988	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	97603285	97603351	protein_coding	Pip4k2b	intron	ENSMUSG00000018547	NonProperStrand	9	chr16	35776218	35776309	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	1	-13.5978
chr5	108099176	108100869	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr8	122895379	122895472	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-6.6965
chr17	39847440	39847509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	46915374	46915391	protein_coding	Kif13a	intron	ENSMUSG00000021375	NonProperStrand	5	1	-3.2379
chrX	142887764	142887854	LINE	L1_Mm	L1	chrXL1_Mm142887248	ProperStrand	1	chrX	142886711	142886757	LINE	L1_Mus2	L1	chrXL1_Mus2142886714	ProperStrand	1	1	-inf
chrX	20678768	20679438	LINE	L1Md_T	L1	chrXL1Md_T20678748	ProperStrand	9	chr13	81557127	81557181	protein_coding	Gpr98	intron	ENSMUSG00000069170	ProperStrand	77	1	-15.4215
chr17	39847330	39847386	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	123652996	123653063	LTR	RLTR18B	ERVK	chr4RLTR18B123652873	ProperStrand	1	1	-inf
chr10	40258472	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr17	39843352	39843691	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	44	-23.1083
chr2	63751068	63751158	LINE	L1_Mur3	L1	chr2L1_Mur363750974	ProperStrand	1	chr2	63751312	63751412	LTR	RMER19B	ERVK	chr2RMER19B63751244	ProperStrand	1	1	-inf
chr9	123461907	123462125	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	65201723	65201825	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	4	-3.5829
chr10	89209331	89209431	protein_coding	Uhrf1bp1l	intron	ENSMUSG00000019951	ProperStrand	2	chr10	89944254	89944344	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	65	1	-20.1199
chr4	116860697	116860797	SINE	B1F	Alu	chr4B1F116860690	NonProperStrand	1	chr4	116860485	116860575	SINE	B2_Mm1a	B2	chr4B2_Mm1a116860459	ProperStrand	1	1	-inf
chr1	118652362	118652895	LINE	Lx2B	L1	chr1Lx2B118652766	ProperStrand	2	chr12	105787795	105787847	LTR	MTEa	MaLR	chr12MTEa105787640	NonProperStrand	6	1	-inf
chr1	77432842	77432942	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	chr2	10453687	10453777	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-8.3328
chr17	87990312	87990332	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int87990155	NonProperStrand	2	chr11	3234442	3234536	protein_coding-noncoding	Pik3ip1	utr5	ENSMUSG00000034614	ProperStrand	2	2	-inf
chr15	80078502	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr19	44114001	44114061	protein_coding	Erlin1	intron	ENSMUSG00000025198	ProperStrand	38	2	-14.3022
chr8	22380946	22383246	LINE	L1_Mus1	L1	chr8L1_Mus122378976	NonProperStrand	7	chr9	123461881	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr4	49652535	49655466	protein_coding-noncoding	Rnf20	utr5	ENSMUSG00000028309	ProperStrand	7	chr4	49652642	49654533	protein_coding	Rnf20	intron	ENSMUSG00000028309	ProperStrand	19	7	-inf
chr17	4082296	4082386	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr1	84264676	84264776	protein_coding	Pid1	intron	ENSMUSG00000045658	ProperStrand	146	1	-9.0776
chr2	174269267	174269387	LTR	MTD	MaLR	chr2MTD174269132	NonProperStrand	2	chr18	51566345	51566368	protein_coding	Prr16	intron	ENSMUSG00000073565	NonProperStrand	13	1	-inf
chr7	110858785	110858803	LINE	L1Md_F2	L1	chr7L1Md_F2110857841	ProperStrand	1	chr17	39843725	39843801	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr17	39846583	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	119239362	119239383	LTR	ERVL-E-int	ERVL	chr9ERVL-E-int119239108	ProperStrand	4	1	-3.6552
chr10	75144181	75144275	protein_coding	Cabin1	intron	ENSMUSG00000020196	NonProperStrand	65	chr13	54190148	54190181	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-12.2298
chr10	53749880	53749977	protein_coding	Man1a	intron	ENSMUSG00000003746	ProperStrand	32	chr19	47035209	47035250	protein_coding	Nt5c2	intron	ENSMUSG00000025041	ProperStrand	39	1	-14.1624
chr11	49737142	49737159	protein_coding	Rasgef1c	intron	ENSMUSG00000020374	ProperStrand	3	chr9	123462017	123462051	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr5	62613104	62613123	LINE	L1Md_T	L1	chr5L1Md_T62610830	NonProperStrand	3	chr15	99037883	99037973	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	1	-18.4369
chr5	107836258	107836346	antisense	Gm17202	.	ENSMUSG00000090558	ProperStrand	12	chr14	32297045	32297076	protein_coding	Mettl6	intron	ENSMUSG00000021891	ProperStrand	8	1	-19.5831
chr13	113827619	113827709	miRNA	Mir449b	.	ENSMUSG00000078027	ProperStrand	6	chr13	113827718	113830113	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	6	-inf
chr7	28977892	28977987	LINE	L1MD3	L1	chr7L1MD328977892	ProperStrand	3	chr8	13147184	13147229	protein_coding	Cul4a	utr3	ENSMUSG00000031446	ProperStrand	40	2	-inf
chrX	4136311	4136363	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr9	110097153	110097180	protein_coding	Smarcc1	intron	ENSMUSG00000032481	NonProperStrand	43	1	-13.4658
chr17	26036680	26067669	protein_coding	Pigq	intron	ENSMUSG00000025728	ProperStrand	31	chr17	26016129	26024448	protein_coding	Rab40c	intron	ENSMUSG00000025730	ProperStrand	53	3	-20.5274
chr10	82955108	82955127	protein_coding	Aldh1l2	intron	ENSMUSG00000020256	NonProperStrand	34	chr11	33308687	33308775	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-8.5818
chr17	89908296	89908386	LINE	L1_Mus3	L1	chr17L1_Mus389906608	NonProperStrand	1	chr11	106988830	106988930	protein_coding	Bptf	intron	ENSMUSG00000040481	NonProperStrand	9	1	-inf
chr1	63542409	63542493	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-4.9942
chr1	89884383	89884478	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	chr11	50103934	50103975	protein_coding	Maml1	intron	ENSMUSG00000050567	NonProperStrand	2	1	-17.2719
chr6	33340983	33341071	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr8	80860189	80860238	protein_coding	Ttc29	intron	ENSMUSG00000037101	ProperStrand	21	1	-8.9241
chr5	33664145	33664235	LTR	ORR1A1	MaLR	chr5ORR1A133663994	ProperStrand	1	chr5	33664334	33664434	SINE	B2_Mm2	B2	chr5B2_Mm233664279	ProperStrand	2	1	-inf
chr4	130266252	130266352	protein_coding	Pum1	intron	ENSMUSG00000028580	NonProperStrand	34	chr4	128843825	128843915	protein_coding	S100pbp	intron	ENSMUSG00000040928	ProperStrand	2	1	-19.6592
chr2	181715917	181716503	LINE	L1_Mur2	L1	chr2L1_Mur2181715450	NonProperStrand	2	chr17	39847636	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr14	121911491	121911581	LTR	MuRRS-int	ERV1	chr14MuRRS-int121911087	ProperStrand	1	chr14	121911578	121911678	LTR	MuRRS-int	ERV1	chr14MuRRS-int121911506	ProperStrand	1	1	-inf
chr4	119063139	119063248	protein_coding	Ccdc30	intron	ENSMUSG00000028637	ProperStrand	31	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.9585
chr17	39847220	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	179679485	179679538	protein_coding	1700016C15Rik	intron	ENSMUSG00000015962	ProperStrand	6	1	-3.9545
chr14	21583423	21583549	protein_coding	Camk2g	utr3	ENSMUSG00000021820	NonProperStrand	161	chr4	101653269	101653287	protein_coding	Gm12790	intron	ENSMUSG00000078626	NonProperStrand	7	1	-14.4706
chr14	29884725	29884815	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	ProperStrand	70	chr17	85011461	85011561	protein_coding	Plekhh2	intron	ENSMUSG00000040852	ProperStrand	89	1	-10.9196
chr17	39847558	39847624	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	103168435	103169567	protein_coding	Atxn3	intron	ENSMUSG00000021189	NonProperStrand	3	1	-4.3512
chrX	108059364	108059454	LTR	IAPEz-int	ERVK	chrXIAPEz-int108058782	NonProperStrand	1	chrX	108059525	108059625	LTR	IAPEz-int	ERVK	chrXIAPEz-int108059484	NonProperStrand	1	1	-inf
chr19	33117126	33117190	LINE	L1MA5A	L1	chr19L1MA5A33115732	NonProperStrand	10	chr11	35840011	35840083	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-12.0418
chr18	77996005	77996105	SINE	B2_Mm1t	B2	chr18B2_Mm1t77996020	NonProperStrand	1	chr18	77995916	77996006	SINE	B3	B2	chr18B377995793	NonProperStrand	1	1	-inf
chr2	156680605	156680718	protein_coding	Tgif2	utr3	ENSMUSG00000062175	ProperStrand	38	chr7	82813094	82813111	protein_coding	Akap13	intron	ENSMUSG00000066406	NonProperStrand	12	1	-16.2429
chr14	65065710	65065797	protein_coding	Msra	intron	ENSMUSG00000054733	ProperStrand	122	chr18	77125246	77125308	protein_coding	Skor2	intron	ENSMUSG00000091519	ProperStrand	55	1	-10.7723
chr4	139454237	139454317	Simple_repeat	(TATG)n	Simple_repeat	chr4(TATG)n139454203	ProperStrand	4	chr7	126306198	126306268	protein_coding	Gpr139	intron	ENSMUSG00000066197	ProperStrand	9	1	-inf
chr16	98062153	98062188	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	57	chr16	59532934	59533043	protein_coding	Crybg3	intron	ENSMUSG00000022723	ProperStrand	14	2	-19.8911
chr9	123461931	123462011	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	36569081	36570784	protein_coding	Trpc3	intron	ENSMUSG00000027716	ProperStrand	12	1	-4.0248
chr16	18321449	18321543	protein_coding-noncoding	D16H22S680E	utr3	ENSMUSG00000013539	ProperStrand	5	chr16	18320016	18320058	protein_coding	D16H22S680E	intron	ENSMUSG00000013539	ProperStrand	15	1	-20.1811
chr17	94770228	94770268	LINE	L1_Mus3	L1	chr17L1_Mus394764195	ProperStrand	19	chr4	133021373	133021433	LTR	RMER19B	ERVK	chr4RMER19B133021086	ProperStrand	1	1	-inf
chr16	89897722	89897814	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr10	80852952	80853007	protein_coding	Dohh	intron	ENSMUSG00000078440	NonProperStrand	15	1	-9.1083
chr14	103091307	103091425	LINE	L1MC3	L1	chr14L1MC3103090914	NonProperStrand	11	chr4	86985246	86985262	SINE	B3	B2	chr4B386985233	ProperStrand	10	1	-19.4454
chr17	39846580	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	107708732	107708755	SINE	B2_Mm1t	B2	chr4B2_Mm1t107708706	NonProperStrand	1	1	-inf
chr8	34828674	34828727	LTR	MMVL30-int	ERV1	chr8MMVL30-int34825870	NonProperStrand	7	chr13	94914038	94914125	protein_coding	Lhfpl2	intron	ENSMUSG00000045312	ProperStrand	32	1	-17.6818
chr10	81409625	81409654	LINE	L1Md_A	L1	chr10L1Md_A81409472	NonProperStrand	1	chr17	39846025	39846149	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr19	23160735	23160823	SINE	B3A	B2	chr19B3A23160689	ProperStrand	5	chr5	131640275	131640316	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	1	-13.9451
chr15	82944722	82944750	protein_coding	Rrp7a	utr3	ENSMUSG00000018040	ProperStrand	48	chr15	103255415	103255433	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	1	-12.2205
chr7	134943596	134943696	protein_coding	Hsd3b7	intron	ENSMUSG00000042289	ProperStrand	21	chr7	134943482	134943572	protein_coding	Setd1a	utr3	ENSMUSG00000042308	ProperStrand	59	2	-20.8767
chr17	39847228	39847268	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	63901959	63902009	LTR	MTE2b	MaLR	chr8MTE2b63901962	NonProperStrand	1	1	-inf
chr8	117411270	117411291	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr9	65201723	65201836	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-5.1837
chr10	117348530	117348546	Low_complexity	A-rich	Low_complexity	chr10A-rich117348524	NonProperStrand	1	chr9	113691960	113692043	protein_coding	Clasp2	intron	ENSMUSG00000033392	NonProperStrand	60	1	-inf
chr14	66298093	66298193	protein_coding-noncoding	Scara5	utr5	ENSMUSG00000022032	ProperStrand	1	chr14	66297987	66298077	protein_coding	Scara5	intron	ENSMUSG00000022032	ProperStrand	35	1	-inf
chr8	114490723	114490807	LINE	Lx5	L1	chr8Lx5114490574	ProperStrand	1	chr8	114521703	114521772	protein_coding	Kars	intron	ENSMUSG00000031948	NonProperStrand	70	1	-inf
chr13	64795123	64795213	LINE	L1_Mus1	L1	chr13L1_Mus164794665	NonProperStrand	1	chr13	64795310	64795410	LTR	RMER19C	ERVK	chr13RMER19C64795238	ProperStrand	1	1	-inf
chr17	39847846	39847887	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	114582154	114582185	SINE	B1_Mus1	Alu	chr8B1_Mus1114582106	NonProperStrand	1	1	-inf
chr4	53776044	53776062	protein_coding	Fktn	utr3	ENSMUSG00000028414	ProperStrand	18	chr9	110281296	110281324	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.9960
chr19	45335243	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr15	53312012	53312121	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-7.9528
chr12	108925382	108925511	LINE	Lx8	L1	chr12Lx8108925244	NonProperStrand	17	chr12	108925530	108925632	LTR	RLTR16	ERVK	chr12RLTR16108925530	ProperStrand	14	6	-19.7808
chr17	39846491	39846543	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	47497759	47497801	lincRNA	Gm17629	exon	ENSMUSG00000090614	ProperStrand	2	1	-5.3533
chr1	119507173	119507273	LTR	RMER17A	ERVK	chr1RMER17A119506928	ProperStrand	1	chr1	119507536	119507626	LTR	RMER17A	ERVK	chr1RMER17A119507444	ProperStrand	1	1	-inf
chr15	76334351	76334451	protein_coding-noncoding	Dgat1	utr3	ENSMUSG00000022555	NonProperStrand	5	chr15	76334301	76334391	protein_coding	Dgat1	exon	ENSMUSG00000022555	NonProperStrand	12	1	-inf
chr16	23111679	23111731	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	123	chr3	138451502	138453801	protein_coding	Tspan5	intron	ENSMUSG00000028152	ProperStrand	84	1	-9.9050
chr17	39847838	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	149325933	149325962	LTR	MTEb	MaLR	chr6MTEb149325895	NonProperStrand	1	1	-inf
chr1	59965108	59965133	SINE	B2_Mm2	B2	chr1B2_Mm259965107	NonProperStrand	1	chr11	62515706	62515794	protein_coding	Zfp287	intron	ENSMUSG00000005267	NonProperStrand	9	1	-inf
chr17	39845912	39845948	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	121904614	121904640	SINE	B3	B2	chr8B3121904586	NonProperStrand	1	1	-inf
chr17	39848207	39848241	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	14	chr8	105303632	105303756	protein_coding	Cdh11	intron	ENSMUSG00000031673	ProperStrand	49	1	-15.3968
chr6	29814065	29814142	protein_coding-noncoding	Ahcyl2	utr5	ENSMUSG00000029772	ProperStrand	7	chr10	5021643	5021681	protein_coding	Syne1	intron	ENSMUSG00000019769	ProperStrand	13	1	-20.2412
chr13	55215329	55215384	protein_coding	Zfp346	intron	ENSMUSG00000021481	ProperStrand	35	chr5	96921298	96921314	protein_coding	Fras1	intron	ENSMUSG00000034687	ProperStrand	39	1	-13.9858
chr6	54122640	54122740	protein_coding	Chn2	intron	ENSMUSG00000004633	ProperStrand	101	chr16	29601417	29601507	protein_coding	Opa1	intron	ENSMUSG00000038084	ProperStrand	37	1	-11.9522
chr11	109011657	109011710	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	148769194	148769284	protein_coding	Mtus2	utr5	ENSMUSG00000029651	NonProperStrand	98	1	-5.1407
chr6	72754261	72754338	SINE	B4A	B4	chr6B4A72754181	ProperStrand	7	chr17	26786344	26786363	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-14.7096
chr8	84662364	84662464	LINE	L1MC1	L1	chr8L1MC184662338	NonProperStrand	2	chr8	84662511	84662601	LINE	Lx4A	L1	chr8Lx4A84662532	NonProperStrand	6	1	-inf
chr12	24531677	24531755	LTR	MLT1B	MaLR	chr12MLT1B24531676	ProperStrand	1	chr12	24530231	24530301	SINE	B1_Mus1	Alu	chr12B1_Mus124530181	NonProperStrand	1	1	-inf
chr5	14945400	14945500	LINE	Lx2A1	L1	chr5Lx2A114944803	ProperStrand	1	chr5	15040099	15040189	LINE	Lx2A1	L1	chr5Lx2A115039330	ProperStrand	1	1	-inf
chr14	55746511	55746559	LTR	MTE2b	MaLR	chr14MTE2b55746445	NonProperStrand	5	chr14	55746223	55746331	SINE	MIRb	MIR	chr14MIRb55746183	ProperStrand	4	3	-inf
chr11	102493283	102493383	SINE	B4	B4	chr11B4102493277	NonProperStrand	3	chr11	102493381	102493471	SINE	B4A	B4	chr11B4A102493407	NonProperStrand	3	3	-inf
chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	31220307	31220395	protein_coding	Emilin1	exon	ENSMUSG00000029163	NonProperStrand	3	1	-4.3017
chr8	40505194	40505294	LINE	L1Md_F2	L1	chr8L1Md_F240504618	NonProperStrand	3	chr17	39847327	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr1	179327023	179327079	LTR	MLT1K	MaLR	chr1MLT1K179326845	ProperStrand	5	chr15	98864751	98864979	protein_coding	Tuba1c	intron	ENSMUSG00000043091	NonProperStrand	30	1	-18.5676
chr12	100699181	100699271	LINE	L1M3	L1	chr12L1M3100698772	ProperStrand	1	chr12	100701502	100701602	SINE	B1_Mus1	Alu	chr12B1_Mus1100701453	ProperStrand	1	1	-inf
chr6	58094590	58094680	LINE	L2a	L2	chr6L2a58094422	NonProperStrand	1	chr11	24886919	24887019	SINE	B4	B4	chr11B424886824	NonProperStrand	1	1	-inf
chr13	98839857	98839990	protein_coding	Rgnef	intron	ENSMUSG00000021662	ProperStrand	140	chr12	113999261	113999279	protein_coding	Pld4	intron	ENSMUSG00000052160	NonProperStrand	1	1	-inf
chr11	109267524	109267624	SINE	B3	B2	chr11B3109267503	NonProperStrand	1	chr11	109267712	109267802	SINE	PB1D10	Alu	chr11PB1D10109267716	ProperStrand	1	1	-inf
chr5	114852115	114852163	protein_coding	Ube3b	intron	ENSMUSG00000029577	NonProperStrand	10	chr1	74678787	74678826	protein_coding	Stk36	intron	ENSMUSG00000033276	ProperStrand	11	1	-19.4391
chr15	90539414	90539431	SINE	B1_Mus2	Alu	chr15B1_Mus290539409	ProperStrand	1	chr1	34819604	34819688	protein_coding	Arhgef4	intron	ENSMUSG00000037509	NonProperStrand	73	1	-inf
chr4	133850506	133850594	LINE	L1Md_F2	L1	chr4L1Md_F2133850527	NonProperStrand	1	chr17	39846439	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	120130466	120130564	SINE	B4	B4	chr9B4120130322	NonProperStrand	37	chr13	97190593	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0707
mmu-miR-466i-5p	1	18	miRNA	mmu-miR-466i-5p	.	mmu-miR-466i-5p	ProperStrand	6	chr11	97834122	97834255	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	1	-15.2154
chr10	12923986	12924026	SINE	B1_Mur4	Alu	chr10B1_Mur412923930	ProperStrand	1	chr9	123462082	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	23785345	23785474	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr2	181068357	181068375	protein_coding	Rtel1	intron	ENSMUSG00000038685	NonProperStrand	15	1	-12.8750
chr3	135239910	135239939	SINE	B4A	B4	chr3B4A135239886	NonProperStrand	1	chr4	123432983	123433108	SINE	B2_Mm1a	B2	chr4B2_Mm1a123432891	ProperStrand	1	1	-inf
chr4	116056105	116056149	protein_coding	Mast2	intron	ENSMUSG00000003810	ProperStrand	73	chr8	83980832	83981271	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-6.1292
chr2	60771709	60771806	protein_coding	Rbms1	intron	ENSMUSG00000026970	ProperStrand	24	chr2	20880768	20880803	protein_coding	Arhgap21	intron	ENSMUSG00000036591	ProperStrand	30	1	-15.2905
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	64861969	64862342	protein_coding	Ptplad1	intron	ENSMUSG00000033629	NonProperStrand	5	1	-3.1907
chr17	39847270	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	34824787	34828194	protein_coding	3110062M04Rik	intron	ENSMUSG00000046806	ProperStrand	2	1	-6.5615
chr16	72664025	72664118	protein_coding	Robo1	utr5	ENSMUSG00000022883	ProperStrand	177	chr2	30150742	30150776	protein_coding	Phyhd1	intron	ENSMUSG00000079484	ProperStrand	34	2	-17.2974
chr17	39846500	39846537	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	53087123	53087244	LTR	MTC	MaLR	chr3MTC53086888	ProperStrand	1	1	-inf
chr3	65292128	65292150	LINE	L2a	L2	chr3L2a65291948	NonProperStrand	1	chr8	93868034	93868121	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	1	-inf
chr8	110997615	110997723	SINE	B4A	B4	chr8B4A110997608	ProperStrand	1	chr11	74843585	74843630	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-inf
chr7	12922331	12922975	LINE	L1Md_T	L1	chr7L1Md_T12921579	ProperStrand	21	chr8	114820118	114820168	SINE	RSINE1	B4	chr8RSINE1114820040	NonProperStrand	2	2	-inf
chr17	39846388	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	139017998	139018028	LTR	MERVK26-int	ERVK	chr5MERVK26-int139017938	NonProperStrand	1	1	-inf
chr13	97190551	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	140482085	140482154	protein_coding	Macrod2	intron	ENSMUSG00000068205	ProperStrand	94	1	-4.2609
chr7	132742531	132742579	LINE	L1MB7	L1	chr7L1MB7132742465	NonProperStrand	1	chr4	117154303	117154334	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-inf
chr17	39847175	39847266	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	45751679	45751733	SINE	B3A	B2	chr19B3A45751674	NonProperStrand	1	1	-inf
chr3	75621451	75621469	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr17	12919655	12919683	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	57	1	-12.9968
chr5	43602658	43602677	LTR	RLTR4_MM-int	ERV1	chr5RLTR4_MM-int43599920	NonProperStrand	2	chr10	18566761	18566891	protein_coding	Perp	intron	ENSMUSG00000019851	ProperStrand	18	1	-21.0482
chr10	128677843	128677880	LINE	L1Md_A	L1	chr10L1Md_A128677774	NonProperStrand	1	chr17	39847234	39847315	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	109011816	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	132310238	132310281	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-3.8910
chr11	58109732	58109822	SINE	B1_Mur1	Alu	chr11B1_Mur158109737	NonProperStrand	1	chr11	58109610	58109710	SINE	B3	B2	chr11B358109611	NonProperStrand	1	1	-inf
chr8	5960826	5960916	LINE	L1MA6	L1	chr8L1MA65960743	ProperStrand	1	chr8	5960428	5960528	LINE	Lx2B	L1	chr8Lx2B5959885	ProperStrand	1	1	-inf
chr5	48045369	48045469	LINE	L1Md_F2	L1	chr5L1Md_F248045384	ProperStrand	1	chr5	48045257	48045347	LINE	L1_Mus1	L1	chr5L1_Mus148045202	NonProperStrand	1	1	-inf
chr17	39847103	39847125	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	79076206	79076342	LTR	RMER17B	ERVK	chr8RMER17B79075568	ProperStrand	1	1	-inf
chr5	146261285	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	4900457	4900505	protein_coding	Ucma	intron	ENSMUSG00000026668	ProperStrand	6	1	-12.6318
chr2	97514335	97514425	LINE	L1Md_T	L1	chr2L1Md_T97510873	ProperStrand	2	chr2	105532979	105533079	protein_coding	Pax6	utr3	ENSMUSG00000027168	NonProperStrand	1	1	-inf
chr11	49173476	49173496	LINE	L1Md_F2	L1	chr11L1Md_F249172122	ProperStrand	1	chr9	123462081	123462184	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	122682254	122682343	LINE	L1MC1	L1	chr10L1MC1122682145	NonProperStrand	1	chr10	122682376	122682476	LTR	MTC	MaLR	chr10MTC122682385	NonProperStrand	1	1	-inf
chr17	39846759	39846790	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	103263240	103263357	protein_coding	Plekhm1	intron	ENSMUSG00000034247	ProperStrand	4	1	-3.6552
chr9	123461957	123462016	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	70504299	70504388	protein_coding	Inca1	intron	ENSMUSG00000057054	ProperStrand	3	2	-12.1476
chr2	177511126	177511175	LINE	L1Md_F	L1	chr2L1Md_F177510076	ProperStrand	6	chr2	175164471	175164551	LTR	MT2A	ERVL	chr2MT2A175164373	ProperStrand	1	1	-inf
chr5	59834013	59834103	LTR	IAPEz-int	ERVK	chr5IAPEz-int59831161	ProperStrand	1	chr5	59834526	59834626	LTR	IAPEz-int	ERVK	chr5IAPEz-int59834268	ProperStrand	1	1	-inf
chr3	108075378	108075404	protein_coding-noncoding	Psma5	utr5	ENSMUSG00000068749	NonProperStrand	1	chr7	117480405	117480485	protein_coding	Sbf2	intron	ENSMUSG00000038371	NonProperStrand	46	1	-inf
chr12	12285812	12285873	protein_coding	Fam49a	intron	ENSMUSG00000020589	ProperStrand	31	chr15	80727195	80727246	protein_coding	Tnrc6b	intron	ENSMUSG00000047888	ProperStrand	52	1	-13.6480
chr5	146261152	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	70225915	70225990	protein_coding	Myo1e	intron	ENSMUSG00000032220	ProperStrand	78	1	-4.5574
chr8	104384447	104384469	LINE	Lx6	L1	chr8Lx6104383798	ProperStrand	4	chr8	104394115	104394205	LTR	RMER17B	ERVK	chr8RMER17B104393303	NonProperStrand	2	1	-20.9262
chr17	39847274	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	4705225	4706022	antisense	Fam71e2	.	ENSMUSG00000049952	NonProperStrand	6	1	-3.9545
chr19	40508143	40508191	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	chr7	111076115	111076225	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-8.3775
chr17	39846427	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	62878539	62878587	SINE	B1_Mur3	Alu	chr10B1_Mur362878528	ProperStrand	1	1	-inf
chr2	3762057	3762103	LINE	L1Md_T	L1	chr2L1Md_T3759542	ProperStrand	2	chr17	39847903	39848001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39848200	39848272	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	131380321	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	17	1	-3.6758
chr10	46780703	46780793	LINE	Lx5	L1	chr10Lx546780666	ProperStrand	1	chr10	46791650	46791750	LTR	MERVL-int	ERVL	chr10MERVL-int46788541	NonProperStrand	1	1	-inf
chr8	78666148	78666211	LINE	L1Md_F2	L1	chr8L1Md_F278665302	NonProperStrand	6	chr17	39846926	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.1926
chr9	96001709	96001733	LTR	BGLII_Mus	ERVK	chr9BGLII_Mus96001702	NonProperStrand	1	chr8	78044363	78044463	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-inf
chr15	82954520	82954571	LTR	MTC	MaLR	chr15MTC82954499	ProperStrand	4	chr15	82955140	82955201	LTR	MTE-int	MaLR	chr15MTE-int82955135	NonProperStrand	2	1	-20.9262
chr14	96110345	96110453	LINE	L1Md_F2	L1	chr14L1Md_F296110021	ProperStrand	1	chr14	96117898	96117937	LINE	L1Md_F2	L1	chr14L1Md_F296117711	NonProperStrand	1	1	-inf
chr8	33913218	33913283	LINE	L1Md_F2	L1	chr8L1Md_F233912349	NonProperStrand	13	chr8	33909423	33909504	LINE	Lx8	L1	chr8Lx833909135	NonProperStrand	14	1	-18.1024
chr10	128850147	128850296	DNA	URR1B	MER1_type	chr10URR1B128850136	ProperStrand	3	chr10	128850337	128852060	LINE	L1Md_Gf	L1	chr10L1Md_Gf128850326	ProperStrand	6	3	-inf
chr15	76182116	76182209	protein_coding	Maf1	intron	ENSMUSG00000022553	NonProperStrand	26	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-11.6360
chr14	99985805	99985898	LTR	RLTR11B	ERVK	chr14RLTR11B99985578	ProperStrand	1	chr1	131574006	131574037	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-inf
chr18	24754219	24754309	protein_coding	Slc39a6	intron	ENSMUSG00000024270	NonProperStrand	14	chr18	24770522	24903899	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	3	-20.3461
chr8	85038160	85038201	LINE	L1Md_F	L1	chr8L1Md_F85034381	ProperStrand	16	chr13	97190576	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chr17	39847346	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	114845055	114845073	LTR	MTD	MaLR	chr4MTD114844901	NonProperStrand	1	1	-inf
chr2	157819539	157819584	protein_coding	Tti1	intron	ENSMUSG00000027650	NonProperStrand	64	chr4	149038161	149038272	protein_coding	Pik3cd	intron	ENSMUSG00000039936	ProperStrand	144	1	-10.1354
chr5	115659287	115659341	LINE	L1Md_F2	L1	chr5L1Md_F2115658985	ProperStrand	1	chr5	146261275	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-inf
chr8	87838764	87838794	LINE	Lx7	L1	chr8Lx787838745	ProperStrand	1	chr17	39846461	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	113128055	113128136	SINE	B2_Mm2	B2	chr12B2_Mm2113128062	NonProperStrand	2	chr12	113131750	113131956	SINE	B3	B2	chr12B3113131872	NonProperStrand	2	2	-inf
chr8	50289951	50290041	LINE	Lx8	L1	chr8Lx850289877	NonProperStrand	1	chr8	50289753	50289853	Simple_repeat	(GGGAGA)n	Simple_repeat	chr8(GGGAGA)n50289752	NonProperStrand	1	1	-inf
chr5	146261163	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	121567879	121567896	protein_coding	Ptpn4	intron	ENSMUSG00000026384	ProperStrand	15	1	-7.8289
chr1	72155820	72155875	SINE	B3A	B2	chr1B3A72155817	NonProperStrand	1	chr8	46494290	46494357	protein_coding	Tlr3	intron	ENSMUSG00000031639	NonProperStrand	10	1	-inf
chr17	39847201	39847245	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	46374772	46374870	Simple_repeat	(TCTA)n	Simple_repeat	chr9(TCTA)n46374739	ProperStrand	1	1	-inf
chr11	119615595	119615700	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	231	chr9	114534231	114534271	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-5.3516
chr17	4082106	4082216	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr3	91099270	91099360	LINE	L1Md_T	L1	chr3L1Md_T91098735	NonProperStrand	8	6	-inf
chr17	39843851	39843914	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	106370164	106371002	protein_coding	Heatr8	intron	ENSMUSG00000047502	NonProperStrand	36	2	-6.6196
chr12	108935028	108935162	LTR	MLT1C	MaLR	chr12MLT1C108935047	ProperStrand	1	chr4	9581132	9581152	protein_coding	Asph	intron	ENSMUSG00000028207	ProperStrand	35	1	-inf
chr10	75937701	75937735	protein_coding	Mcm3ap	intron	ENSMUSG00000001150	ProperStrand	37	chr9	107770552	107770658	protein_coding	Rbm6	intron	ENSMUSG00000032582	ProperStrand	49	1	-13.4095
chr12	99927591	99927681	protein_coding	Ptpn21	exon	ENSMUSG00000021009	NonProperStrand	77	chr17	7264158	7264258	protein_coding	Gm1604b	intron	ENSMUSG00000073470	ProperStrand	137	3	-inf
chr10	128362343	128362372	LINE	L1_Mus1	L1	chr10L1_Mus1128362128	ProperStrand	2	chr17	39847613	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39847668	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	40260221	40260327	LTR	ORR1E	MaLR	chr4ORR1E40260066	ProperStrand	1	1	-inf
chr17	39848099	39848353	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	14	chr17	39843352	39843571	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	23	2	-20.0457
chr18	82960042	82960143	SINE	B4A	B4	chr18B4A82960041	NonProperStrand	2	chr18	82959942	82960032	Simple_repeat	(TG)n	Simple_repeat	chr18(TG)n82959941	ProperStrand	2	2	-inf
chr6	142923417	142923511	Other	RMER1B	Other	chr6RMER1B142922921	ProperStrand	3	chr11	75751882	75751906	protein_coding	Rph3al	utr5	ENSMUSG00000020847	NonProperStrand	157	1	-16.4616
chr10	77841325	77841425	SINE	B3A	B2	chr10B3A77841341	NonProperStrand	1	chr10	77841740	77841830	SINE	ID4	ID	chr10ID477841735	NonProperStrand	1	1	-inf
chr10	95176694	95176773	SINE	B1_Mur4	Alu	chr10B1_Mur495176626	NonProperStrand	1	chr16	91837120	91837153	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	1	-inf
chr5	66569493	66569552	SINE	B1_Mur2	Alu	chr5B1_Mur266569399	ProperStrand	1	chr16	57391116	57391613	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	1	-inf
chr7	67740730	67740811	LTR	ORR1D2-int	MaLR	chr7ORR1D2-int67740413	ProperStrand	1	chr4	121149954	121150025	pseudogene	Gm12880	.	ENSMUSG00000082821	ProperStrand	7	1	-inf
chr5	24897189	24897279	protein_coding	Mll3	intron	ENSMUSG00000038056	NonProperStrand	7	chr5	24897517	24897617	pseudogene	Hspe1-ps3	.	ENSMUSG00000092344	ProperStrand	1	1	-inf
chr9	7679353	7679370	antisense	AV064505	.	ENSMUSG00000086381	NonProperStrand	2	chr17	27634385	27634470	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-16.6618
chr9	123461944	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	77017422	77018773	protein_coding	Cep135	intron	ENSMUSG00000036403	NonProperStrand	8	1	-4.8360
chr17	39847437	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	4136307	4136362	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	9	-8.1153
chr8	116201326	116201426	LTR	MLT1F	MaLR	chr8MLT1F116201253	NonProperStrand	1	chr8	116201107	116201197	LTR	MTE2a	MaLR	chr8MTE2a116200972	ProperStrand	1	1	-inf
chr13	23751493	23751569	LINE	Lx8	L1	chr13Lx823751469	NonProperStrand	4	chr17	39847657	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr2	60831891	60831945	LINE	L2a	L2	chr2L2a60831818	ProperStrand	1	chr17	39846353	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	108875225	108875255	LINE	L1_Mm	L1	chrXL1_Mm108874698	NonProperStrand	1	chr17	39846660	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr7	68394445	68394535	LINE	L1Md_A	L1	chr7L1Md_A68394222	NonProperStrand	1	chr7	68394662	68394762	LINE	L1Md_A	L1	chr7L1Md_A68394594	ProperStrand	1	1	-inf
chr5	18189052	18189152	LINE	L1_Mur1	L1	chr5L1_Mur118187551	ProperStrand	1	chr5	18189180	18189270	Simple_repeat	(TTC)n	Simple_repeat	chr5(TTC)n18189149	NonProperStrand	1	1	-inf
chr12	53809117	53809217	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	chr12	53879329	53879419	protein_coding	Akap6	intron	ENSMUSG00000061603	ProperStrand	14	1	-12.5894
chr17	39844018	39844066	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr10	80640390	80640481	protein_coding	Eef2	intron	ENSMUSG00000034994	ProperStrand	12	1	-7.1668
chr11	4772210	4772301	LTR	RLTR8	ERVK	chr11RLTR84772132	NonProperStrand	1	chr9	118674951	118675014	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr14	73340660	73340760	LINE	L1M3d	L1	chr14L1M3d73340672	NonProperStrand	1	chr14	73341040	73341130	SINE	B4	B4	chr14B473341044	ProperStrand	1	1	-inf
chr17	39846717	39846749	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	40883895	40883917	Simple_repeat	(TTC)n	Simple_repeat	chr10(TTC)n40883515	ProperStrand	2	1	-5.3533
chr10	37273910	37274000	LTR	MTA_Mm	MaLR	chr10MTA_Mm37273720	NonProperStrand	1	chr10	37273612	37273712	LTR	RMER16-int	ERVK	chr10RMER16-int37271813	NonProperStrand	1	1	-inf
chr17	39845567	39845619	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr15	96388645	96388681	LTR	MERVL-int	ERVL	chr15MERVL-int96384073	NonProperStrand	30	1	-3.4679
chr2	22744886	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr12	99645568	99645675	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	1	-6.8757
chr2	59294126	59294175	LTR	MLT1J	MaLR	chr2MLT1J59294096	ProperStrand	1	chr12	78350926	78351009	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr2	127777529	127777578	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	chr2	163079763	163079844	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-9.0101
chr8	120669360	120672792	LTR	RLTR16	ERVK	chr8RLTR16120672334	ProperStrand	4	chr8	120672809	120673237	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n120672813	ProperStrand	8	4	-inf
chr7	49818105	49826795	LTR	MYSERV-int	ERVK	chr7MYSERV-int49826617	ProperStrand	1	chr2	156550912	156550929	protein_coding	Dlgap4	intron	ENSMUSG00000061689	NonProperStrand	5	1	-inf
chr11	107335062	107335162	SINE	B1_Mm	Alu	chr11B1_Mm107334999	NonProperStrand	9	chr11	107335162	107335252	SINE	B1_Mus1	Alu	chr11B1_Mus1107335177	NonProperStrand	9	9	-inf
chr10	11197115	11197148	LTR	MuRRS-int	ERV1	chr10MuRRS-int11196658	ProperStrand	4	chr17	39846793	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr6	131367776	131368404	LTR	MTE2a	MaLR	chr6MTE2a131367684	ProperStrand	2	chr6	131379399	131379436	Other	RMER1B	Other	chr6RMER1B131379406	ProperStrand	14	1	-19.5799
chr12	54696848	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr7	133054705	133054746	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.6278
chr17	39848141	39848157	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	45628041	45628059	protein_coding	BC016579	utr3	ENSMUSG00000033187	ProperStrand	2	1	-8.4422
chr17	39848099	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	15555090	15555122	protein_coding	Ube2v2	utr3	ENSMUSG00000022674	ProperStrand	16	1	-3.7913
chr17	39846453	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	94197377	94197447	LTR	MTD	MaLR	chrXMTD94197262	NonProperStrand	3	1	-4.3017
chr10	59010805	59013798	protein_coding	Ccdc109a	intron	ENSMUSG00000009647	NonProperStrand	16	chr9	123461931	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-5.9898
chr16	31136776	31136818	protein_coding	Acap2	intron	ENSMUSG00000049076	ProperStrand	103	chr5	20886379	20886492	protein_coding	Ccdc146	intron	ENSMUSG00000064280	NonProperStrand	14	1	-13.9009
chr17	70963742	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	87426787	87426881	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-6.0197
chr12	104814084	104814109	protein_coding	Ppp4r4	intron	ENSMUSG00000021209	NonProperStrand	63	chr3	129532652	129532767	protein_coding	Gar1	intron	ENSMUSG00000028010	NonProperStrand	22	1	-13.9633
chr3	138755360	138755418	LINE	Lx8	L1	chr3Lx8138754627	ProperStrand	6	chr10	84548334	84548431	LTR	MurERV4_19-int	ERVK	chr10MurERV4_19-int84547318	NonProperStrand	1	1	-inf
chr5	146244563	146244696	LINE	L1Md_A	L1	chr5L1Md_A146242149	ProperStrand	34	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.7044
chr9	115253874	115253906	LTR	RMER17B	ERVK	chr9RMER17B115253556	ProperStrand	1	chr5	134205793	134205815	Low_complexity	GA-rich	Low_complexity	chr5GA-rich134205718	ProperStrand	1	1	-inf
chr2	22744837	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	173578277	173578299	protein_coding	Vapb	intron	ENSMUSG00000054455	NonProperStrand	48	1	-7.2526
chr16	56912343	56912388	LINE	Lx5	L1	chr16Lx556912057	NonProperStrand	1	chr17	4082098	4082133	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	1	-inf
chr6	32667597	32667687	Simple_repeat	(TTC)n	Simple_repeat	chr6(TTC)n32667589	NonProperStrand	1	chr11	3655051	3655151	protein_coding	Osbp2	intron	ENSMUSG00000020435	NonProperStrand	65	1	-inf
chr18	78285266	78285356	LINE	Lx2B	L1	chr18Lx2B78284359	NonProperStrand	1	chr18	78285426	78285526	SINE	B3	B2	chr18B378285433	NonProperStrand	1	1	-inf
chr1	192745638	192745687	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr13	14200173	14200256	protein_coding	Arid4b	intron	ENSMUSG00000039219	ProperStrand	27	1	-14.0895
chr3	90475844	90475896	LINE	Lx9	L1	chr3Lx990474879	ProperStrand	8	chr5	146261132	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	2	-14.6787
chr8	22398366	22398456	LTR	MERVL-int	ERVL	chr8MERVL-int22398392	ProperStrand	2	chr8	22398179	22398279	LTR	MT2_Mm	ERVL	chr8MT2_Mm22397776	ProperStrand	2	2	-inf
chr17	39843836	39843920	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr7	107542593	107542660	protein_coding	C2cd3	intron	ENSMUSG00000047248	ProperStrand	36	1	-3.9193
chr6	60443503	60443524	LINE	L1_Mus1	L1	chr6L1_Mus160442656	ProperStrand	1	chr10	110927518	110927653	protein_coding	Nap1l1	intron	ENSMUSG00000058799	ProperStrand	52	1	-inf
chr8	33913343	33913442	LINE	L1Md_F2	L1	chr8L1Md_F233912349	NonProperStrand	13	chr13	113994986	113995031	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-11.5984
chr10	94209685	94209769	protein_coding	Ccdc41	intron	ENSMUSG00000020024	ProperStrand	17	chr16	13632707	13632781	protein_coding	Parn	intron	ENSMUSG00000022685	ProperStrand	65	1	-14.4280
chr17	70963690	70963773	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	149731255	149731905	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	1	-3.3431
chr15	89558245	89558263	DNA	Kanga11a	Tc2	chr15Kanga11a89557917	ProperStrand	1	chr17	39846883	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	89419093	89419193	LINE	L1Md_F2	L1	chr4L1Md_F289418349	ProperStrand	1	chr4	89419299	89419389	LINE	Lx5	L1	chr4Lx589419227	ProperStrand	1	1	-inf
chr17	3108731	3108807	LINE	Lx5	L1	chr17Lx53107642	NonProperStrand	2	chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	56262170	56262270	SINE	B4A	B4	chr17B4A56262049	NonProperStrand	5	chr17	56261142	56261232	protein_coding	Lrg1	intron	ENSMUSG00000037095	NonProperStrand	28	5	-inf
chr3	9307158	9307248	LINE	L1_Mus1	L1	chr3L1_Mus19305908	ProperStrand	1	chr3	9307622	9307722	LINE	L1_Mus1	L1	chr3L1_Mus19307522	ProperStrand	1	1	-inf
chr16	91531012	91531102	LTR	LTRIS_Mm	ERV1	chr16LTRIS_Mm91530708	ProperStrand	1	chr12	67660186	67660286	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr4	125168042	125168167	protein_coding	Grik3	utr5	ENSMUSG00000001985	ProperStrand	112	chr16	22053857	22053886	pseudogene	Gm4943	.	ENSMUSG00000068487	NonProperStrand	1	1	-inf
chr17	39847277	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	99376213	99376246	protein_coding	Krt39	intron	ENSMUSG00000064165	NonProperStrand	1	1	-inf
chr17	39847880	39848071	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	21750430	21750512	protein_coding	Olfr1361	exon	ENSMUSG00000049737	ProperStrand	6	2	-5.2646
chr18	40792715	40792782	LTR	ORR1B2	MaLR	chr18ORR1B240792534	ProperStrand	6	chr7	118134207	118134284	SINE	MIRb	MIR	chr7MIRb118134174	ProperStrand	1	1	-inf
chr18	65583181	65583271	LTR	ORR1E-int	MaLR	chr18ORR1E-int65583094	NonProperStrand	1	chr18	65624786	65624886	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	1	-inf
chr10	83414861	83414931	SINE	ID4_	ID	chr10ID4_83414852	ProperStrand	7	chr14	21576805	21576885	protein_coding	Camk2g	intron	ENSMUSG00000021820	NonProperStrand	161	1	-14.4720
chr4	41394408	41394508	protein_coding-noncoding	Kif24	utr3	ENSMUSG00000028438	NonProperStrand	2	chr4	41394310	41394400	protein_coding	Kif24	intron	ENSMUSG00000028438	NonProperStrand	51	1	-20.9863
chr17	42290564	42290664	LINE	Lx5	L1	chr17Lx542290497	ProperStrand	1	chr17	42290304	42290394	SINE	B3	B2	chr17B342290281	NonProperStrand	1	1	-inf
chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	chr18	75372952	75372980	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-8.0474
chr19	6069171	6069231	protein_coding-noncoding	1110014N23Rik	utr3	ENSMUSG00000024797	ProperStrand	2	chr19	6069081	6069131	protein_coding	1110014N23Rik	exon	ENSMUSG00000024797	ProperStrand	8	2	-inf
chr17	70963685	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	10980759	10980793	protein_coding	Litaf	intron	ENSMUSG00000022500	ProperStrand	55	1	-6.3794
chr1	34167614	34167683	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	chr3	95338607	95338654	protein_coding	Ctss	intron	ENSMUSG00000038642	NonProperStrand	22	1	-8.8028
chr17	39847221	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	65281606	65281652	protein_coding	Nlrp4f	intron	ENSMUSG00000032999	NonProperStrand	10	2	-5.2538
chr17	23815570	23815660	SINE	B1_Mur3	Alu	chr17B1_Mur323815494	NonProperStrand	5	chr17	23815673	23815773	SINE	B1_Mus1	Alu	chr17B1_Mus123815702	NonProperStrand	9	3	-inf
chr17	39846822	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	71597572	71597661	protein_coding	Lpin2	utr3	ENSMUSG00000024052	NonProperStrand	5	1	-3.1907
chr6	123319758	123319858	LTR	IAPEz-int	ERVK	chr6IAPEz-int123319401	ProperStrand	1	chr6	123319860	123319950	LTR	IAPEz-int	ERVK	chr6IAPEz-int123319787	ProperStrand	1	1	-inf
chr7	10725967	10729563	LINE	Lx5	L1	chr7Lx510728830	NonProperStrand	1	chr17	39846580	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	22744871	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr8	95455888	95455978	LINE	L1MD1	L1	chr8L1MD195455895	NonProperStrand	2	1	-14.2535
chr1	5170619	5170640	LINE	Lx4B	L1	chr1Lx4B5169206	NonProperStrand	2	chr17	39847181	39847290	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-inf
chr5	146261288	146261339	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	20986919	20987025	protein_coding	Fam185a	utr3	ENSMUSG00000047221	NonProperStrand	15	1	-10.6884
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr5	114401295	114401420	protein_coding	Ssh1	intron	ENSMUSG00000042121	NonProperStrand	37	1	-8.8188
chr6	127476299	127476361	LINE	Lx5	L1	chr6Lx5127475747	ProperStrand	1	chr17	39847673	39847735	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr13	97190552	97190591	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.7719
chr2	146300378	146300480	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	ProperStrand	101	chr13	97190561	97190583	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.1252
chr17	39847471	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	116797096	116797129	processed_transcript	Gm13014	.	ENSMUSG00000084943	NonProperStrand	1	1	-inf
chr9	107633949	107634039	SINE	RSINE1	B4	chr9RSINE1107633943	ProperStrand	1	chr9	107633853	107633953	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n107633863	NonProperStrand	1	1	-inf
chr1	72858735	72858809	SINE	B2_Mm2	B2	chr1B2_Mm272858598	ProperStrand	1	chr15	98745454	98745533	protein_coding	Lmbr1l	intron	ENSMUSG00000022999	ProperStrand	55	1	-inf
chr14	70757078	70757145	LINE	Lx3_Mus	L1	chr14Lx3_Mus70756969	ProperStrand	1	chr12	110524296	110524363	LTR	MT2B2	ERVL	chr12MT2B2110524063	NonProperStrand	1	1	-inf
chr17	39846462	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	48592108	48592173	SINE	MIR	MIR	chr4MIR48592095	NonProperStrand	1	1	-inf
chr13	77820567	77820602	LINE	L1Md_T	L1	chr13L1Md_T77820020	NonProperStrand	2	chr17	39847538	39847583	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-inf
chrX	60681261	60681284	LINE	L1VL4	L1	chrXL1VL460680893	ProperStrand	1	chr3	32741725	32741801	protein_coding	Usp13	intron	ENSMUSG00000056900	ProperStrand	29	1	-inf
chr6	88675771	88675871	protein_coding-noncoding	Mgll	utr5	ENSMUSG00000033174	ProperStrand	1	chr6	88675612	88675702	protein_coding	Mgll	utr5	ENSMUSG00000033174	ProperStrand	4	1	-inf
chr14	54363491	54366794	LINE	L1Md_T	L1	chr14L1Md_T54365212	ProperStrand	3	chr17	39845935	39846035	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	3	-inf
chr17	85197737	85197777	LTR	MERVL-int	ERVL	chr17MERVL-int85196539	NonProperStrand	1	chr11	33367278	33367349	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-inf
chr7	68114919	68114941	LINE	L1Md_F2	L1	chr7L1Md_F268114085	ProperStrand	3	chr8	75011050	75011110	protein_coding	Slc35e1	intron	ENSMUSG00000019731	NonProperStrand	2	1	-20.2824
chr5	33512500	33512590	DNA	Charlie25	MER1_type	chr5Charlie2533512493	ProperStrand	21	chr5	33512337	33512437	SINE	B3	B2	chr5B333512302	NonProperStrand	8	4	-inf
chr11	80135817	80135858	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	NonProperStrand	7	chr11	101604938	101605031	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-16.8929
chr19	27394868	27394968	LINE	Lx8	L1	chr19Lx827394324	NonProperStrand	3	chr19	27394976	27395066	LTR	ORR1D2	MaLR	chr19ORR1D227394985	NonProperStrand	1	1	-inf
chrX	155214978	155215068	DNA	FordPrefect	Tip100	chrXFordPrefect155214770	ProperStrand	1	chrX	155215216	155215316	LINE	Lx8	L1	chrXLx8155215237	NonProperStrand	1	1	-inf
chr6	100384931	100384950	LTR	RLTR45	ERVK	chr6RLTR45100384684	NonProperStrand	1	chr16	35981625	35981648	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-inf
chr7	75769466	75769566	DNA	MER99	hAT?	chr7MER9975769347	NonProperStrand	2	chr10	40258554	40258644	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	1	-12.7697
chr17	39843816	39843892	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr13	23463533	23463607	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	1	-4.8672
chr2	120524321	120524366	protein_coding	Stard9	exon	ENSMUSG00000033705	NonProperStrand	75	chr9	105819462	105819552	protein_coding	Col6a5	intron	ENSMUSG00000091345	ProperStrand	15	1	-14.3963
chr14	65975943	65976927	DNA	MER20	MER1_type	chr14MER2065975851	NonProperStrand	1	chr1	91287799	91287860	DNA	URR1A	MER1_type	chr1URR1A91287752	ProperStrand	1	1	-inf
chr8	122426970	122427008	LTR	ORR1B1-int	MaLR	chr8ORR1B1-int122426783	ProperStrand	3	chr8	122427007	122427287	SINE	B1_Mus1	Alu	chr8B1_Mus1122427165	ProperStrand	1	1	-inf
chr14	21545619	21545709	protein_coding	Ndst2	intron	ENSMUSG00000039308	NonProperStrand	56	chr19	8975239	8975339	protein_coding	Ganab	intron	ENSMUSG00000071650	ProperStrand	138	2	-16.5146
chr10	88176423	88176523	SINE	B1_Mur2	Alu	chr10B1_Mur288176436	ProperStrand	3	chr10	88176327	88176417	SINE	PB1D10	Alu	chr10PB1D1088176297	ProperStrand	3	3	-inf
chr11	90592370	90594791	LINE	Lx8	L1	chr11Lx890592344	ProperStrand	3	chr11	90594796	90600230	LINE	Lx8	L1	chr11Lx890594543	ProperStrand	3	3	-inf
chr17	39846491	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	52983078	53010661	protein_coding	Lhfp	intron	ENSMUSG00000048332	NonProperStrand	12	3	-4.9509
chr17	39847603	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	27371504	27371523	LTR	ORR1A1	MaLR	chr19ORR1A127371441	ProperStrand	1	1	-inf
chr18	33857686	33857776	LTR	MERVL-int	ERVL	chr18MERVL-int33857695	ProperStrand	5	chr18	33857586	33857686	LTR	ORR1A3-int	MaLR	chr18ORR1A3-int33857608	ProperStrand	1	1	-inf
chr2	26725581	26725681	LTR	RMER15	ERVL	chr2RMER1526725549	NonProperStrand	1	chr2	32460517	32460607	protein_coding	St6galnac6	intron	ENSMUSG00000026811	ProperStrand	3	1	-inf
chr14	34344252	34344332	SINE	B1_Mm	Alu	chr14B1_Mm34344162	ProperStrand	1	chr14	34344381	34344440	SINE	MIR	MIR	chr14MIR34344339	NonProperStrand	2	1	-inf
chr9	19658025	19658115	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr1	34059938	34060039	protein_coding	Dst	intron	ENSMUSG00000026131	NonProperStrand	14	1	-13.7130
chr5	10266939	10267029	LINE	L1_Mus1	L1	chr5L1_Mus110266575	ProperStrand	2	chr5	10267069	10267169	LINE	L1_Mus1	L1	chr5L1_Mus110267042	ProperStrand	2	2	-inf
chr9	12208487	12208587	DNA	Charlie12	MER1_type	chr9Charlie1212208493	NonProperStrand	1	chr9	12208647	12208737	LINE	Lx5	L1	chr9Lx512208582	ProperStrand	1	1	-inf
chr12	48929438	48929538	LINE	L1Md_F2	L1	chr12L1Md_F248927448	NonProperStrand	1	chr12	40919587	40919677	protein_coding	Gm889	intron	ENSMUSG00000071342	NonProperStrand	1	1	-inf
chr15	75895878	75896284	protein_coding	Scrib	intron	ENSMUSG00000022568	ProperStrand	50	chr16	32380389	32380489	protein_coding	Ubxn7	intron	ENSMUSG00000053774	ProperStrand	53	1	-12.6404
chr5	30140323	30140423	LINE	L1_Mus1	L1	chr5L1_Mus130140020	NonProperStrand	1	chr5	30140520	30140610	LTR	LTRIS2	ERV1	chr5LTRIS230140469	ProperStrand	2	1	-inf
chr9	63249761	63249852	lincRNA	Gm16759	intron	ENSMUSG00000086539	NonProperStrand	41	chr9	63246923	63246958	protein_coding	2300009A05Rik	exon	ENSMUSG00000032403	ProperStrand	5	1	-18.0935
chr4	109557416	109557516	protein_coding	Faf1	intron	ENSMUSG00000010517	NonProperStrand	30	chr14	13376458	13376548	protein_coding	Cadps	intron	ENSMUSG00000054423	ProperStrand	13	1	-16.5651
chr19	36958501	36961662	protein_coding	Tnks2	exon	ENSMUSG00000024811	ProperStrand	16	chr4	104528091	104528174	protein_coding	C8a	intron	ENSMUSG00000035031	NonProperStrand	68	1	-14.4597
chr15	10592632	10592702	protein_coding	Rai14	intron	ENSMUSG00000022246	ProperStrand	160	chr8	123444752	123444821	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-5.0102
chr11	76449471	76449560	SINE	B1_Mus2	Alu	chr11B1_Mus276449431	NonProperStrand	1	chr11	76448769	76448787	SINE	B2_Mm1a	B2	chr11B2_Mm1a76448661	ProperStrand	1	1	-inf
chr11	109011826	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	141392235	141392318	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-3.9410
chr17	39846395	39846551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	27951337	27952416	lincRNA	F730016J06Rik	intron	ENSMUSG00000086425	ProperStrand	14	3	-4.3574
chr9	110226834	110226907	SINE	B3	B2	chr9B3110226768	NonProperStrand	3	chr9	110227118	110227176	SINE	B3A	B2	chr9B3A110227120	NonProperStrand	2	1	-20.2824
chr11	20324790	20324879	SINE	B1_Mus2	Alu	chr11B1_Mus220324805	NonProperStrand	1	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr15	60360996	60361086	LINE	L1Md_F2	L1	chr15L1Md_F260360996	NonProperStrand	1	chr15	60360787	60360887	LINE	L1Md_T	L1	chr15L1Md_T60359897	NonProperStrand	1	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr15	47539994	47540128	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-9.9654
chr17	39847514	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	44573908	44573927	protein_coding	Wnt8b	intron	ENSMUSG00000036961	NonProperStrand	1	1	-inf
chr10	78197825	78199080	LINE	L1Md_T	L1	chr10L1Md_T78197538	NonProperStrand	1	chr13	97190545	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr4	63550019	63550092	LINE	Lx7	L1	chr4Lx763549944	ProperStrand	3	chr17	39847440	39847525	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-8.1061
chr17	39847659	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	8953931	8953964	SINE	B1_Mur4	Alu	chr19B1_Mur48953916	NonProperStrand	1	1	-inf
chr6	3201470	3201540	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	38085719	38085737	LTR	ORR1D1	MaLR	chr9ORR1D138085704	ProperStrand	2	1	-10.1342
chr2	173763068	173763145	DNA	ORSL-2b	Tip100	chr2ORSL-2b173762995	NonProperStrand	2	chr17	31648002	31648064	protein_coding	Wdr4	intron	ENSMUSG00000024037	ProperStrand	95	1	-18.6969
chr17	39843772	39843818	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr10	75708812	75708926	SINE	MIRb	MIR	chr10MIRb75708815	NonProperStrand	5	1	-7.9392
chr17	47515670	47515746	protein_coding-noncoding	Mrps10	utr5	ENSMUSG00000034729	ProperStrand	6	chr9	40803610	40803668	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-12.1894
chr2	150199544	150199621	LINE	L1Md_F2	L1	chr2L1Md_F2150199237	NonProperStrand	1	chr2	150193305	150193389	LINE	L1VL4	L1	chr2L1VL4150192564	NonProperStrand	1	1	-inf
chr18	78920969	78921010	LINE	L1_Mus3	L1	chr18L1_Mus378920953	ProperStrand	1	chrX	136271710	136271727	protein_coding	Tbc1d8b	intron	ENSMUSG00000042473	NonProperStrand	10	1	-inf
chrX	21680557	21680582	LINE	Lx9	L1	chrXLx921680470	ProperStrand	4	chr17	39847440	39847548	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr13	44744843	44744933	SINE	ID_B1	B4	chr13ID_B144744778	ProperStrand	3	chr13	44744938	44745038	Simple_repeat	(TAGA)n	Simple_repeat	chr13(TAGA)n44744964	ProperStrand	2	2	-inf
chr18	75463665	75463765	SINE	B2_Mm2	B2	chr18B2_Mm275463584	ProperStrand	3	chr18	75463796	75463886	SINE	B3	B2	chr18B375463803	NonProperStrand	3	3	-inf
chr7	137027294	137027397	LINE	L1_Rod	L1	chr7L1_Rod137026470	ProperStrand	2	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-17.7690
chr2	156524391	156524466	protein_coding	Dlgap4	intron	ENSMUSG00000061689	ProperStrand	127	chr10	72974666	72974685	sense_intronic	Gm15397	.	ENSMUSG00000085176	ProperStrand	2	1	-18.0574
chr4	120300233	120300333	LINE	L1MD3	L1	chr4L1MD3120300205	ProperStrand	1	chr4	120299822	120299912	Low_complexity	CT-rich	Low_complexity	chr4CT-rich120299816	ProperStrand	1	1	-inf
chr17	39848498	39848520	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	78155553	78155585	protein_coding	Pigs	utr3	ENSMUSG00000041958	NonProperStrand	11	1	-4.7901
chr5	25068309	25068409	LINE	Lx	L1	chr5Lx25068306	NonProperStrand	1	chr5	25068178	25068268	SINE	B2_Mm1t	B2	chr5B2_Mm1t25068135	NonProperStrand	1	1	-inf
chr16	17995666	17995766	LTR	IAPLTR2b	ERVK	chr16IAPLTR2b17995504	NonProperStrand	1	chr16	17995935	17996025	LTR	RLTR26	ERVK	chr16RLTR2617995825	ProperStrand	1	1	-inf
chr11	101494393	101494476	protein_coding	Rdm1	intron	ENSMUSG00000010362	NonProperStrand	23	chr9	110281299	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.4949
chr14	64685255	64685341	LTR	MT2C_Mm	ERVL	chr14MT2C_Mm64684923	ProperStrand	3	chr14	120203396	120203415	protein_coding	Hs6st3	intron	ENSMUSG00000053465	NonProperStrand	21	1	-19.5588
chr3	79916020	79916047	LTR	MTC	MaLR	chr3MTC79915861	NonProperStrand	1	chr17	12992131	12992148	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	1	-inf
chr9	22749821	22749851	SINE	B2_Mm2	B2	chr9B2_Mm222749804	NonProperStrand	1	chr19	45582399	45582491	protein_coding	Btrc	intron	ENSMUSG00000025217	NonProperStrand	40	1	-inf
chr9	107780698	107780798	SINE	B2_Mm1a	B2	chr9B2_Mm1a107780606	NonProperStrand	1	chr9	107780847	107780937	SINE	B2_Mm2	B2	chr9B2_Mm2107780799	NonProperStrand	1	1	-inf
chr15	103299744	103299818	protein_coding	Nckap1l	intron	ENSMUSG00000022488	ProperStrand	25	chr1	136228773	136228857	protein_coding	Ppfia4	intron	ENSMUSG00000026458	ProperStrand	22	1	-15.8496
chr6	84666171	84666253	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	chr12	79511528	79511601	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-4.7559
chr14	69767642	69767662	LTR	ORR1A4	MaLR	chr14ORR1A469767617	ProperStrand	2	chr17	39846921	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	4082296	4082386	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr7	63024961	63025061	protein_coding	Siglech	intron	ENSMUSG00000051504	NonProperStrand	1	1	-inf
chr3	18244323	18244345	LINE	L1_Mus3	L1	chr3L1_Mus318244218	ProperStrand	1	chr17	39847903	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	65176269	65176355	LTR	LTR33	ERVL	chr14LTR3365176144	NonProperStrand	1	chr17	39846477	39846523	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846721	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	78646169	78646203	LTR	RLTR20B2	ERVK	chr8RLTR20B278645954	ProperStrand	1	1	-inf
chr2	29154018	29157015	LINE	L1Md_T	L1	chr2L1Md_T29153854	NonProperStrand	4	chr17	39846395	39846434	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr11	49248375	49248475	LINE	L1MA6	L1	chr11L1MA649248395	NonProperStrand	1	chr13	58394723	58394781	protein_coding	Kif27	intron	ENSMUSG00000060176	ProperStrand	75	1	-inf
chr3	90231719	90231785	protein_coding	Ints3	intron	ENSMUSG00000027933	NonProperStrand	20	chr1	37897698	37897774	protein_coding	Tsga10	intron	ENSMUSG00000060771	NonProperStrand	14	1	-17.1904
chr11	109011656	109011718	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	107974456	107974511	protein_coding	Rnf123	intron	ENSMUSG00000041528	NonProperStrand	29	1	-7.5483
chrX	9850763	9850840	protein_coding	Otc	intron	ENSMUSG00000031173	ProperStrand	3	chr19	45936507	45936558	protein_coding	9130011E15Rik	intron	ENSMUSG00000039901	ProperStrand	149	1	-16.5533
chrX	75866782	75866902	LINE	L1VL1	L1	chrXL1VL175864674	NonProperStrand	6	chr1	93194718	93194746	lincRNA	Gm17560	intron	ENSMUSG00000091871	NonProperStrand	1	1	-inf
chr17	39845761	39845823	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	80264731	80264783	SINE	MIR	MIR	chr7MIR80264619	ProperStrand	3	1	-8.2800
chr17	39847636	39847760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	120938617	120938651	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n120938477	ProperStrand	9	2	-3.9821
chr4	5669654	5669688	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	chr14	14719996	14720100	protein_coding	Gm281	intron	ENSMUSG00000084902	NonProperStrand	42	1	-10.9159
chr8	78506123	78506223	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	chr4	151934689	151934779	protein_coding	Nphp4	intron	ENSMUSG00000039577	ProperStrand	7	3	-21.0365
chr9	106431447	106431541	Other	RMER1A	Other	chr9RMER1A106431168	ProperStrand	15	chr6	33876583	33876633	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-9.6141
chrX	73781014	73781176	LINE	Lx2	L1	chrXLx273779912	NonProperStrand	8	chr10	5907929	5908014	protein_coding	1700052N19Rik	intron	ENSMUSG00000061759	ProperStrand	1	1	-inf
chr13	113811449	113811519	LTR	ORR1E	MaLR	chr13ORR1E113811339	ProperStrand	3	chr11	12270943	12271003	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	2	-inf
chr18	41932112	41932138	LINE	L1_Mus4	L1	chr18L1_Mus441930026	NonProperStrand	13	chr7	100932145	100932161	LINE	Lx3C	L1	chr7Lx3C100931637	NonProperStrand	1	1	-inf
chr16	4040130	4040224	protein_coding	Trap1	exon	ENSMUSG00000005981	ProperStrand	68	chr7	4483137	4483157	protein_coding	6030429G01Rik	intron	ENSMUSG00000055809	ProperStrand	41	1	-12.5397
chr5	67516464	67516484	LTR	MTC	MaLR	chr5MTC67516437	ProperStrand	1	chr8	78075712	78075843	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-6.8987
chr17	39845952	39845984	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr18	59175197	59175219	protein_coding	Adamts19	intron	ENSMUSG00000053441	ProperStrand	10	2	-8.8604
chr4	21678949	21678966	protein_coding	Ccnc	intron	ENSMUSG00000028252	NonProperStrand	6	chr7	131379688	131379784	sense_intronic	Gm15338	.	ENSMUSG00000085899	ProperStrand	34	1	-18.0170
chr2	180467779	180467804	protein_coding	Slc17a9	intron	ENSMUSG00000023393	ProperStrand	21	chr18	84379948	84380052	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-11.6564
chr2	130276519	130276619	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	chr8	84486832	84486922	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-4.9746
chr13	74038732	74038752	LTR	RMER5	ERV1	chr13RMER574038725	NonProperStrand	1	chr13	74038858	74038880	SINE	B1_Mm	Alu	chr13B1_Mm74038820	ProperStrand	1	1	-inf
chr15	88713405	88713954	SINE	B1_Mm	Alu	chr15B1_Mm88713835	ProperStrand	2	chr15	88713306	88713406	SINE	B1_Mur3	Alu	chr15B1_Mur388713259	NonProperStrand	2	2	-inf
chr3	140970585	140970654	LINE	L1Md_F2	L1	chr3L1Md_F2140970226	NonProperStrand	2	chr3	127577747	127577805	protein_coding	5730508B09Rik	intron	ENSMUSG00000050549	NonProperStrand	11	1	-21.2279
chr3	104804384	104804542	LINE	Lx8	L1	chr3Lx8104803965	NonProperStrand	6	chr11	88845301	88845339	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	1	-15.9050
chr18	67828470	67829900	protein_coding	Ptpn2	intron	ENSMUSG00000024539	NonProperStrand	44	chr5	73542519	73542596	protein_coding	Fryl	intron	ENSMUSG00000070733	NonProperStrand	82	1	-12.0202
chrX	120470298	120470388	LINE	L1_Mus3	L1	chrXL1_Mus3120468025	ProperStrand	1	chrX	120470484	120470584	LINE	Lx3C	L1	chrXLx3C120470365	NonProperStrand	1	1	-inf
chr10	42215289	42215376	LINE	L1Md_F2	L1	chr10L1Md_F242215301	NonProperStrand	1	chr17	39846471	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846411	39846507	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	59082196	59082212	protein_coding	Wnt3a	intron	ENSMUSG00000009900	NonProperStrand	2	1	-5.3533
chr4	120542002	120542605	protein_coding	Rims3	intron	ENSMUSG00000032890	NonProperStrand	44	chr19	8888534	8888559	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	1	-10.9901
chr17	39847445	39847516	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	26921097	26921158	LTR	RMER19A	ERVK	chr5RMER19A26920761	ProperStrand	3	1	-4.3512
chr11	91321770	91321860	LINE	Lx8	L1	chr11Lx891321671	NonProperStrand	1	chr11	91321567	91321667	LTR	ORR1E	MaLR	chr11ORR1E91321473	NonProperStrand	1	1	-inf
chr17	39847172	39847193	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	52513661	52513692	LTR	RNERVK23-int	ERVK	chrXRNERVK23-int52513326	ProperStrand	1	1	-inf
chr17	39847623	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	113068234	113068356	lincRNA	4732490B19Rik	intron	ENSMUSG00000085421	ProperStrand	2	1	-5.4040
chr9	50725494	50725579	protein_coding	Sik2	intron	ENSMUSG00000037112	ProperStrand	10	chr3	9599058	9599115	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-10.1346
chr9	123461931	123461983	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	33738171	33738229	protein_coding	4933407H18Rik	intron	ENSMUSG00000037355	NonProperStrand	11	1	-4.1956
chr17	39846454	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	19560283	19560344	protein_coding	Trim55	intron	ENSMUSG00000060913	ProperStrand	5	1	-3.1907
chr8	107675517	107675617	LTR	MER31A	ERV1	chr8MER31A107675395	NonProperStrand	3	chr8	107675629	107675719	SINE	B3	B2	chr8B3107675640	NonProperStrand	2	2	-inf
chr5	93117448	93117511	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	chr13	97190575	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1868
chr5	146261268	146261325	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-6.1564
chr13	92226861	92226943	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	103	chr19	23726510	23726572	protein_coding	1700028P14Rik	intron	ENSMUSG00000033053	NonProperStrand	21	1	-13.0647
chr1	63476007	63476097	LTR	ORR1B1	MaLR	chr1ORR1B163475940	NonProperStrand	1	chr1	63712299	63712399	protein_coding	Dytn	intron	ENSMUSG00000069085	ProperStrand	1	1	-inf
chr16	19155142	19155242	LINE	Lx7	L1	chr16Lx719155112	NonProperStrand	1	chr16	19155025	19155115	SINE	B3	B2	chr16B319154944	ProperStrand	1	1	-inf
chr9	15498083	15498171	LINE	Lx7	L1	chr9Lx715497968	ProperStrand	1	chr17	39848099	39848157	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr5	23999165	23999232	protein_coding	Agap3	intron	ENSMUSG00000023353	NonProperStrand	15	chr9	123461839	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chrX	12149366	12149456	DNA	MER2	MER2_type	chrXMER212149388	NonProperStrand	2	chrX	12149230	12149330	LINE	L1MC4a	L1	chrXL1MC4a12149117	ProperStrand	2	2	-inf
chr3	11725001	11725020	LINE	L1_Mm	L1	chr3L1_Mm11725004	ProperStrand	1	chr17	39847702	39847794	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	85229702	85229767	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	chr19	11734512	11734535	protein_coding	Plac1l	intron	ENSMUSG00000055895	NonProperStrand	1	1	-inf
chr8	73937961	73938051	LTR	MYSERV6-int	ERVK	chr8MYSERV6-int73937957	ProperStrand	1	chr8	73937799	73937899	LTR	RLTR11A2	ERVK	chr8RLTR11A273937644	ProperStrand	1	1	-inf
chr17	33551294	33551394	LINE	L1Md_T	L1	chr17L1Md_T33551281	ProperStrand	3	chr17	33551130	33551297	LINE	Lx	L1	chr17Lx33550790	ProperStrand	5	3	-inf
chr6	134454729	134454801	protein_coding	Lrp6	intron	ENSMUSG00000030201	ProperStrand	57	chr6	134566862	134566924	protein_coding	Mansc1	intron	ENSMUSG00000032718	ProperStrand	19	1	-14.4597
chr8	3574933	3574956	protein_coding	C330021F23Rik	intron	ENSMUSG00000065952	ProperStrand	2	chr2	167448390	167448500	protein_coding	Ube2v1	intron	ENSMUSG00000078923	NonProperStrand	62	1	-19.5353
chr17	39846954	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	110263877	110263951	Satellite	MMSAT4	Satellite	chr5MMSAT4110263806	NonProperStrand	1	1	-inf
chr1	36631945	36631967	protein_coding	Fam178b	intron	ENSMUSG00000046337	NonProperStrand	23	chr7	122768917	122768933	protein_coding	Sox6	intron	ENSMUSG00000051910	ProperStrand	19	1	-16.2700
chr3	96176731	96176775	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	8	chr6	136804289	136804379	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	1	-17.5490
chr17	39846664	39846767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	36039006	36039049	protein_coding	Mrrf	intron	ENSMUSG00000026887	NonProperStrand	5	1	-3.1907
chr1	46807702	46807729	LTR	ORR1A4-int	MaLR	chr1ORR1A4-int46807652	NonProperStrand	1	chr6	35510871	35510903	LTR	MTD	MaLR	chr6MTD35510831	NonProperStrand	1	1	-inf
chr4	88304735	88304763	LINE	L1Md_F2	L1	chr4L1Md_F288304325	ProperStrand	1	chr5	115327420	115330517	protein_coding	4930519G04Rik	intron	ENSMUSG00000029564	ProperStrand	28	1	-inf
chr14	65139274	65139325	SINE	B1F	Alu	chr14B1F65139224	NonProperStrand	1	chr19	5798233	5798314	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr9	110281296	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr11	58786483	58786499	protein_coding	Trim17	utr3	ENSMUSG00000036964	ProperStrand	1	1	-inf
chr18	35558009	35558035	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr7	127527844	127527968	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	118	1	-7.0673
chr6	91518219	91518240	LTR	MTD-int	MaLR	chr6MTD-int91517814	NonProperStrand	1	chr6	91516984	91517104	LTR	MTD	MaLR	chr6MTD91516985	NonProperStrand	2	1	-inf
chr2	5379281	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr10	59531379	59531439	protein_coding	Ascc1	intron	ENSMUSG00000044475	NonProperStrand	55	1	-4.7153
chr17	39845311	39845393	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr11	34393521	34393581	protein_coding	Dock2	intron	ENSMUSG00000020143	ProperStrand	20	1	-4.2357
chr5	53638222	53638293	LTR	MTE2b	MaLR	chr5MTE2b53637986	NonProperStrand	1	chr5	144822757	144824464	LTR	ORR1D2	MaLR	chr5ORR1D2144822572	ProperStrand	1	1	-inf
chr2	30071167	30071262	LTR	MTE-int	MaLR	chr2MTE-int30071041	NonProperStrand	9	chr5	115474519	115474537	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-13.0432
chr4	141302331	141302387	SINE	B1F	Alu	chr4B1F141302327	ProperStrand	1	chr4	141302233	141302279	Simple_repeat	(TA)n	Simple_repeat	chr4(TA)n141302140	ProperStrand	4	1	-inf
chr2	14143692	14143722	LTR	RMER4B	ERVK	chr2RMER4B14143649	NonProperStrand	1	chr2	14134369	14134495	protein_coding	Fam23a	intron	ENSMUSG00000061531	ProperStrand	23	1	-inf
chr15	90227444	90227512	LINE	Lx8	L1	chr15Lx890226560	ProperStrand	1	chr2	22744838	22744905	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-inf
chrX	133936872	133936889	LTR	IAPEz-int	ERVK	chrXIAPEz-int133936225	NonProperStrand	1	chrX	101673329	101673356	LTR	MTD	MaLR	chrXMTD101673288	ProperStrand	1	1	-inf
chr12	108226729	108226829	LTR	RLTR15	ERVK	chr12RLTR15108226512	ProperStrand	5	chr12	108226828	108226918	SINE	RSINE1	B4	chr12RSINE1108226816	ProperStrand	4	4	-inf
chr17	39846352	39846395	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	113956138	113956171	SINE	B3	B2	chr9B3113956049	ProperStrand	1	1	-inf
chr1	162225464	162225481	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	NonProperStrand	41	chr11	119293566	119293649	protein_coding	Rnf213	intron	ENSMUSG00000070327	NonProperStrand	25	2	-inf
chrX	74023413	74023469	LINE	Lx	L1	chrXLx74023081	ProperStrand	1	chr17	39847844	39847914	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	157112370	157112454	protein_coding	Rpn2	intron	ENSMUSG00000027642	NonProperStrand	20	chr4	124715659	124715686	protein_coding	Gnl2	intron	ENSMUSG00000028869	ProperStrand	17	1	-16.7859
chr12	28777440	28777540	LINE	Lx	L1	chr12Lx28777250	ProperStrand	2	chr13	13596145	13596236	protein_coding	Nid1	intron	ENSMUSG00000005397	NonProperStrand	5	2	-inf
chr9	40803582	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr2	5379266	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	6	-6.9015
chr5	33512739	33512857	LINE	L1Md_F2	L1	chr5L1Md_F233512756	NonProperStrand	15	chr6	3201493	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-5.5348
chr3	95659969	95660732	lincRNA	Gm16884	intron	ENSMUSG00000087673	ProperStrand	40	chr9	118674951	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-10.9404
chr2	33231735	33231835	LTR	LTR33B	ERVL	chr2LTR33B33231742	ProperStrand	1	chr2	33231857	33231947	SINE	B1_Mus2	Alu	chr2B1_Mus233231853	ProperStrand	1	1	-inf
chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	15	chr12	54734571	54734712	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	1	-13.1571
chr17	39846694	39846794	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	31910438	31910528	LTR	RLTR14	ERV1	chr18RLTR1431910444	NonProperStrand	1	1	-inf
chr5	139290220	139290283	SINE	B3	B2	chr5B3139290098	NonProperStrand	1	chr14	21662168	21662254	protein_coding	Plau	utr3	ENSMUSG00000021822	ProperStrand	53	1	-inf
chrX	94186868	94186938	LINE	L1_Mm	L1	chrXL1_Mm94186716	NonProperStrand	1	chr9	123461825	123461867	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	12438267	12438330	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	chr1	167269527	167269580	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	1	-6.7507
chr2	22744873	22744906	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	127785432	127785455	protein_coding	Csmd2	intron	ENSMUSG00000028804	NonProperStrand	11	1	-10.2537
chr17	39847366	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	19883802	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	26	-3.0915
chr5	146261265	146261338	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	123461811	123462182	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	25	-14.4768
chr17	39847440	39847803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	75001696	75001943	LTR	MTA_Mm	MaLR	chr18MTA_Mm75001701	ProperStrand	11	3	-5.3922
chr2	18211192	18211277	protein_coding	Dnajc1	intron	ENSMUSG00000026740	NonProperStrand	79	chr9	88456478	88456554	protein_coding	Zfp949	intron	ENSMUSG00000032425	NonProperStrand	42	1	-12.1890
chr17	39846462	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	119289946	119289968	LTR	ORR1E	MaLR	chr5ORR1E119289894	ProperStrand	1	1	-inf
chr6	3201430	3201502	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	155323238	155323317	protein_coding	Ube2j2	intron	ENSMUSG00000023286	NonProperStrand	17	1	-5.2844
chr7	135704306	135704339	LTR	MT2A	ERVL	chr7MT2A135704116	ProperStrand	1	chr7	135688690	135688778	protein_coding	Bag3	intron	ENSMUSG00000030847	NonProperStrand	7	1	-inf
chr12	84930910	84931000	protein_coding	Zfyve1	intron	ENSMUSG00000042628	NonProperStrand	3	chr12	84915791	84915891	protein_coding	Zfyve1	exon	ENSMUSG00000042628	ProperStrand	15	1	-21.4444
chrX	120461330	120461430	LTR	ORR1D2-int	MaLR	chrXORR1D2-int120461240	ProperStrand	1	chrX	120461021	120461111	LTR	RMER19A	ERVK	chrXRMER19A120461006	NonProperStrand	1	1	-inf
chr17	34899003	34899043	LTR	ETnERV2-int	ERVK	chr17ETnERV2-int34898402	ProperStrand	1	chr3	96269880	96269930	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	1	-inf
chr2	52083812	52083908	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	chr16	11365182	11365201	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	1	-10.0551
chr3	75621450	75621472	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr9	123461883	123462121	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.4935
chr5	30060680	30060780	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr6	125849403	125849493	protein_coding	Ano2	intron	ENSMUSG00000038115	ProperStrand	38	1	-14.4963
chr3	32341055	32341175	protein_coding	Pik3ca	intron	ENSMUSG00000027665	NonProperStrand	80	chr6	61267569	61267586	protein_coding	Fam190a	intron	ENSMUSG00000039578	ProperStrand	28	1	-12.9868
chr18	34777190	34793032	protein_coding	Brd8	intron	ENSMUSG00000003778	NonProperStrand	20	chr18	34777321	34793133	protein_coding	Cdc23	utr3	ENSMUSG00000024370	NonProperStrand	28	5	-inf
chr19	5800479	5800560	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr10	80255117	80255959	protein_coding	Dot1l	utr3	ENSMUSG00000061589	ProperStrand	91	1	-3.6557
chr18	27483942	27484032	LINE	Lx	L1	chr18Lx27483833	ProperStrand	1	chr18	27484158	27484258	LTR	RMER17B	ERVK	chr18RMER17B27484131	NonProperStrand	1	1	-inf
chr17	39847634	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	47687642	47687774	SINE	B3	B2	chr9B347687584	ProperStrand	3	1	-4.3512
chr5	110854109	110854147	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	NonProperStrand	38	chr2	108984271	108984350	protein_coding	Mettl15	intron	ENSMUSG00000057234	ProperStrand	13	1	-16.0903
chr8	68721801	68721819	protein_coding	March1	intron	ENSMUSG00000036469	ProperStrand	80	chr12	82371588	82371645	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	1	-10.1375
chr6	49263758	49263849	LTR	RMER16-int	ERVK	chr6RMER16-int49263682	NonProperStrand	8	chr6	49263564	49263682	SINE	B2_Mm1a	B2	chr6B2_Mm1a49263492	ProperStrand	5	3	-inf
chr17	39847097	39847205	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	59179629	59179646	LTR	IAPEz-int	ERVK	chr3IAPEz-int59175066	NonProperStrand	2	1	-6.5615
chr17	56021949	56022008	LINE	L1_Mur1	L1	chr17L1_Mur156021910	ProperStrand	1	chr17	56022758	56022832	LTR	RMER19B	ERVK	chr17RMER19B56022767	ProperStrand	3	1	-inf
chrX	23226915	23226961	LINE	L1_Mur2	L1	chrXL1_Mur223225945	ProperStrand	2	chr7	134899566	134899621	protein_coding	Fbxl19	intron	ENSMUSG00000030811	ProperStrand	91	1	-18.7983
chrX	76779669	76779769	LTR	ETnERV2-int	ERVK	chrXETnERV2-int76779675	ProperStrand	1	chrX	76779551	76779641	SINE	B1_Mus1	Alu	chrXB1_Mus176779524	ProperStrand	1	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	26150477	26150522	lincRNA	Gm16933	intron	ENSMUSG00000086289	ProperStrand	2	1	-5.3533
chr17	39846818	39846882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	98142018	98142104	SINE	B1_Mus2	Alu	chr11B1_Mus298142025	ProperStrand	1	1	-inf
chr7	6010538	6010628	protein_coding	Nlrp4c	intron	ENSMUSG00000034690	NonProperStrand	1	chr13	18873810	18873910	protein_coding	Vps41	intron	ENSMUSG00000041236	ProperStrand	28	1	-inf
chr7	16252974	16252996	LINE	L1_Mus1	L1	chr7L1_Mus116251828	NonProperStrand	1	chr9	53443685	53443800	protein_coding	Cul5	intron	ENSMUSG00000032030	ProperStrand	18	1	-inf
chrX	4136311	4136361	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr2	5379283	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.2854
chr9	57830036	57830136	LTR	RLTR10-int	ERVK	chr9RLTR10-int57829909	NonProperStrand	1	chr9	57829840	57829930	LTR	RLTR10	ERVK	chr9RLTR1057829540	NonProperStrand	1	1	-inf
chr13	40877647	40877670	LTR	ORR1A4	MaLR	chr13ORR1A440877497	NonProperStrand	1	chr13	40877897	40877930	LTR	ORR1D2	MaLR	chr13ORR1D240877846	NonProperStrand	2	1	-inf
chr7	81341602	81341702	LTR	MTE2a	MaLR	chr7MTE2a81341575	NonProperStrand	2	chr7	81341770	81341860	LTR	MTE2a	MaLR	chr7MTE2a81341678	NonProperStrand	3	2	-inf
chr5	146261160	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	66118734	66118823	protein_coding	Dapk2	intron	ENSMUSG00000032380	NonProperStrand	28	1	-6.5650
chr14	67052653	67052749	LINE	Lx8	L1	chr14Lx867052494	NonProperStrand	2	chr8	122384268	122384320	SINE	MIR	MIR	chr8MIR122384215	ProperStrand	3	1	-20.8297
chr6	39399918	39400420	Low_complexity	GA-rich	Low_complexity	chr6GA-rich39400308	NonProperStrand	1	chr10	75746554	75746651	protein_coding	Dip2a	intron	ENSMUSG00000020231	ProperStrand	98	1	-inf
chr7	52351537	52351627	protein_coding	Fcgrt	intron	ENSMUSG00000003420	ProperStrand	1	chr17	13804860	13804960	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	1	-inf
chr17	39846635	39846666	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	73955500	73957790	protein_coding	Nkd2	utr3	ENSMUSG00000021567	NonProperStrand	3	1	-4.3017
chr7	25330818	25331090	protein_coding	2310033E01Rik	utr5	ENSMUSG00000011632	NonProperStrand	19	chr7	25331103	25333824	protein_coding	Xrcc1	intron	ENSMUSG00000051768	ProperStrand	67	4	-20.3145
chr9	78175385	78175440	protein_coding	Omt2b	utr5	ENSMUSG00000038750	NonProperStrand	30	chr11	48801754	48801831	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-10.6683
chr3	138846309	138846372	LINE	L1Md_F2	L1	chr3L1Md_F2138842907	NonProperStrand	18	chr5	121598254	121598307	protein_coding	Ptpn11	intron	ENSMUSG00000043733	ProperStrand	45	1	-15.0491
chr15	51888267	51888357	LINE	L1Md_A	L1	chr15L1Md_A51888022	NonProperStrand	1	chr15	51888046	51888146	LINE	L1Md_A	L1	chr15L1Md_A51888022	ProperStrand	1	1	-inf
chr19	15905626	15905708	LINE	L1MA5	L1	chr19L1MA515905636	ProperStrand	2	chr5	124836190	124836262	protein_coding	Sbno1	intron	ENSMUSG00000038095	ProperStrand	15	1	-22.6177
chr2	102829375	102829459	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr9	123461811	123462167	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	18	-inf
chr7	65312822	65312862	LINE	L1Md_A	L1	chr7L1Md_A65312566	NonProperStrand	10	chr12	99932308	99932342	protein_coding	Ptpn21	intron	ENSMUSG00000021009	NonProperStrand	77	1	-15.1975
chr10	62807933	62842527	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	2	-9.7165
chr3	81054215	81054306	LTR	MTE-int	MaLR	chr3MTE-int81053933	ProperStrand	1	chr3	81081429	81081452	Other	RMER1A	Other	chr3RMER1A81081282	NonProperStrand	1	1	-inf
chr9	65201724	65201842	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr8	111773834	111773864	protein_coding	4922502B01Rik	utr5	ENSMUSG00000054165	ProperStrand	9	1	-14.9524
chr16	31957665	31957736	protein_coding	Ncbp2	utr3	ENSMUSG00000022774	ProperStrand	14	chr9	123462126	123462170	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr17	39847440	39847456	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	95056441	95056548	SINE	B1_Mus2	Alu	chr3B1_Mus295056423	NonProperStrand	1	1	-inf
chr11	116080666	116081317	polymorphic_pseudogene	Cdk3-ps	.	ENSMUSG00000092300	NonProperStrand	15	chr11	116081310	116082351	protein_coding	Evpl	exon	ENSMUSG00000034282	ProperStrand	13	5	-inf
chr18	33853322	33853412	LTR	MTD	MaLR	chr18MTD33853170	ProperStrand	1	chr18	34045151	34045251	protein_coding	Epb4.1l4a	intron	ENSMUSG00000024376	NonProperStrand	8	1	-inf
chr8	43994303	43994403	LINE	L1MA7	L1	chr8L1MA743994217	NonProperStrand	1	chr8	43994517	43994607	SINE	B4	B4	chr8B443994536	NonProperStrand	1	1	-inf
chr15	31496063	31496163	SINE	B1_Mur2	Alu	chr15B1_Mur231496016	ProperStrand	3	chr15	31496159	31498629	protein_coding	Cmbl	utr5	ENSMUSG00000022235	NonProperStrand	11	3	-inf
chr10	81181621	81181978	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	chr7	126796639	126796667	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	2	-10.6845
chr13	21907106	21907172	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int21905019	ProperStrand	21	chr14	27279332	27279404	protein_coding-noncoding	Slmap	utr3	ENSMUSG00000021870	NonProperStrand	2	1	-20.4508
chr11	29212559	29212613	LTR	ORR1A4	MaLR	chr11ORR1A429212371	ProperStrand	1	chr17	39847823	39847888	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	61752362	61752462	LINE	L1Md_F	L1	chr8L1Md_F61750018	NonProperStrand	1	chr8	61752934	61753024	LINE	L1_Mus2	L1	chr8L1_Mus261752938	NonProperStrand	1	1	-inf
chrX	74387090	74387192	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int74386916	ProperStrand	1	chr11	78504441	78504457	protein_coding	Nlk	intron	ENSMUSG00000017376	NonProperStrand	32	1	-inf
chr2	167433722	167433794	protein_coding	Gm20431	utr3	ENSMUSG00000089739	NonProperStrand	53	chr16	92082631	92082667	protein_coding	Slc5a3	utr3	ENSMUSG00000089774	ProperStrand	25	1	-14.0475
chr14	19278151	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr9	110281285	110281343	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	2	-11.4029
chr12	91634442	91634477	LINE	L1M4c	L1	chr12L1M4c91633730	ProperStrand	1	chr16	4052903	4053529	protein_coding	Trap1	exon	ENSMUSG00000005981	ProperStrand	68	1	-inf
chr12	108936242	108936332	SINE	B3A	B2	chr12B3A108936188	ProperStrand	1	chr12	108936423	108936523	Simple_repeat	(TAGA)n	Simple_repeat	chr12(TAGA)n108936339	ProperStrand	1	1	-inf
chr5	132452643	132452730	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	chr16	19883802	19883924	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-4.1752
chr17	39848483	39848602	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	106824509	106824528	protein_coding	Slco2b1	intron	ENSMUSG00000030737	ProperStrand	2	1	-8.7208
chr9	70235609	70235709	protein_coding	Myo1e	intron	ENSMUSG00000032220	ProperStrand	78	chr2	73564394	73564484	protein_coding	Chn1	intron	ENSMUSG00000056486	ProperStrand	42	1	-12.2144
chr12	99501167	99501267	SINE	B3A	B2	chr12B3A99501124	NonProperStrand	1	chr12	99501319	99501409	Simple_repeat	(CATATA)n	Simple_repeat	chr12(CATATA)n99501324	NonProperStrand	1	1	-inf
chr3	133485586	133485644	LINE	L1_Mus2	L1	chr3L1_Mus2133484331	ProperStrand	14	chr9	20890761	20890828	protein_coding	Raver1	exon	ENSMUSG00000010205	NonProperStrand	43	1	-15.6614
chr16	10418830	10418869	protein_coding	Nubp1	intron	ENSMUSG00000022503	ProperStrand	11	chr9	123462151	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr6	11686383	11686483	LINE	L2a	L2	chr6L2a11686356	NonProperStrand	1	chr8	13417145	13417235	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	1	-inf
chr3	41571156	41571236	LINE	L1Md_T	L1	chr3L1Md_T41567774	NonProperStrand	86	chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-7.1604
chr12	3442509	3451732	protein_coding	Asxl2	exon	ENSMUSG00000037486	ProperStrand	73	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.5862
chr11	94112530	94112571	LINE	L1MC	L1	chr11L1MC94111959	ProperStrand	1	chr11	94116004	94116110	LTR	MT2A	ERVL	chr11MT2A94115877	ProperStrand	1	1	-inf
chr11	20161351	20161377	LTR	RMER19C	ERVK	chr11RMER19C20161059	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr7	110783564	110783654	LINE	Lx	L1	chr7Lx110783102	ProperStrand	2	chr7	110873252	110873352	LINE	Lx5	L1	chr7Lx5110872591	ProperStrand	1	1	-inf
chr7	107646994	107647084	protein_coding-noncoding	Ucp2	utr5	ENSMUSG00000033685	NonProperStrand	1	chr7	107646837	107646937	protein_coding	Ucp2	intron	ENSMUSG00000033685	NonProperStrand	1	1	-inf
chr11	53723169	53723269	LTR	RLTR28	ERVL	chr11RLTR2853723046	NonProperStrand	1	chr11	53723490	53723580	SINE	B1_Mus1	Alu	chr11B1_Mus153723474	NonProperStrand	1	1	-inf
chr5	93110986	93111065	SINE	B4A	B4	chr5B4A93110828	NonProperStrand	1	chr13	108856968	108856987	protein_coding	Ndufaf2	intron	ENSMUSG00000068184	NonProperStrand	3	1	-inf
chr11	119776510	119776600	protein_coding	Chmp6	intron	ENSMUSG00000025371	ProperStrand	7	chr15	83149694	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-14.7650
chrX	58415888	58415978	lincRNA	C230004F18Rik	intron	ENSMUSG00000071753	NonProperStrand	2	chr15	50705737	50705837	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	55	1	-19.1124
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	59489367	59489440	SINE	ID4_	ID	chr1ID4_59489364	ProperStrand	1	1	-inf
chr9	123462008	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	126923076	126923200	protein_coding	Ank2	intron	ENSMUSG00000032826	ProperStrand	19	1	-3.1531
chr2	165471810	165471896	SINE	B4A	B4	chr2B4A165471816	ProperStrand	1	chr2	165470346	165470386	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n165470337	NonProperStrand	1	1	-inf
chr6	82768106	82768196	LINE	Lx8	L1	chr6Lx882768104	NonProperStrand	4	chr6	82767963	82768063	SINE	B3	B2	chr6B382767880	NonProperStrand	3	3	-inf
chr6	136804230	136804304	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	chr11	77821412	77821496	protein_coding	Phf12	intron	ENSMUSG00000037791	ProperStrand	154	1	-11.4648
chr6	34309966	34309982	protein_coding	Akr1b8	intron	ENSMUSG00000029762	NonProperStrand	44	chr6	147013009	147013154	protein_coding	Mrps35	intron	ENSMUSG00000040112	ProperStrand	21	1	-14.7737
chr9	59671946	59671963	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	chr1	131573814	131573852	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-3.3713
chr3	92924997	92925097	LINE	L1VL4	L1	chr3L1VL492923823	NonProperStrand	1	chr3	92925185	92925275	LINE	L1VL4	L1	chr3L1VL492925084	NonProperStrand	1	1	-inf
chr9	123461931	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	39073267	39073339	protein_coding	Ppp6c	intron	ENSMUSG00000026753	ProperStrand	8	1	-4.8360
chrX	13669093	13669113	LTR	RLTR23	ERV1	chrXRLTR2313668708	NonProperStrand	3	chr7	98703623	98703764	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-15.9546
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	108168541	108168636	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	169	1	-4.1003
chrX	111594799	111594856	protein_coding	Klhl4	intron	ENSMUSG00000025597	NonProperStrand	4	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.0813
chrX	74228486	74228811	LINE	L1Md_F3	L1	chrXL1Md_F374228638	NonProperStrand	3	chrX	74228343	74228443	LINE	L1_Mm	L1	chrXL1_Mm74227594	ProperStrand	11	2	-inf
chr1	167279245	167279370	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	chr2	18026432	18026451	protein_coding	Mllt10	intron	ENSMUSG00000026743	NonProperStrand	11	1	-12.0346
chr17	54633242	54633332	LINE	L1_Mus3	L1	chr17L1_Mus354631291	ProperStrand	1	chr17	54633517	54633617	LTR	RLTR22_Mur	ERVK	chr17RLTR22_Mur54633369	NonProperStrand	1	1	-inf
chr2	101978105	101978205	protein_coding-noncoding	Ldlrad3	utr3	ENSMUSG00000048058	ProperStrand	1	chr2	101978232	101978322	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-inf
chr5	110883992	110884123	SINE	B1_Mus1	Alu	chr5B1_Mus1110883861	NonProperStrand	1	chr9	21243117	21243138	protein_coding	Dnm2	intron	ENSMUSG00000033335	NonProperStrand	56	1	-inf
chr17	39846592	39846648	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	168011157	168011180	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	4	1	-3.6552
chr4	142218713	142218806	SINE	RSINE1	B4	chr4RSINE1142218734	NonProperStrand	4	chr9	123462101	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-10.7746
chr14	19278154	19278209	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr5	132468237	132468300	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-6.7382
chr10	99938391	99938491	protein_coding-noncoding	Tmtc3	utr3	ENSMUSG00000036676	NonProperStrand	1	chr10	99937904	99937994	protein_coding	Tmtc3	intron	ENSMUSG00000036676	NonProperStrand	1	1	-inf
chr12	67665488	67665528	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr1	24751474	24751551	protein_coding	Lmbrd1	intron	ENSMUSG00000073725	ProperStrand	48	2	-18.6189
chr15	97848523	97848613	LTR	ORR1B2	MaLR	chr15ORR1B297848469	NonProperStrand	1	chr15	97848325	97848425	SINE	B1_Mur2	Alu	chr15B1_Mur297848335	NonProperStrand	1	1	-inf
chr19	17477827	17510168	SINE	PB1D10	Alu	chr19PB1D1017477783	NonProperStrand	1	chr19	17478022	17478122	SINE	PB1D9	Alu	chr19PB1D917478036	NonProperStrand	1	1	-inf
chr9	19657527	19658015	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr14	33967406	33967807	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	14	-inf
chr9	44813985	44814090	protein_coding	Cd3e	intron	ENSMUSG00000032093	ProperStrand	9	chrX	7908767	7908785	protein_coding	Ssxb10	intron	ENSMUSG00000068219	ProperStrand	5	1	-inf
chr17	39847277	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	23247450	23247520	LTR	ORR1C1	MaLR	chrXORR1C123247454	NonProperStrand	2	2	-inf
chr9	76649335	76649435	LINE	Lx7	L1	chr9Lx776649170	ProperStrand	1	chr9	76649499	76649589	LTR	ORR1D1	MaLR	chr9ORR1D176649517	NonProperStrand	1	1	-inf
chr17	39846462	39846497	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	29447962	29448050	SINE	B2_Mm2	B2	chr7B2_Mm229447987	NonProperStrand	2	1	-5.3533
chr2	18963908	18963990	LINE	L1Md_T	L1	chr2L1Md_T18963882	NonProperStrand	1	chr2	18963176	18963242	LINE	L1VL2	L1	chr2L1VL218960220	NonProperStrand	8	1	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	22145229	22145329	pseudogene	Gm4425	.	ENSMUSG00000092465	ProperStrand	2	1	-5.3533
chr17	39843936	39844012	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr9	44913397	44913444	protein_coding	Amica1	intron	ENSMUSG00000048534	NonProperStrand	6	1	-8.6346
chr1	192745628	192745665	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr15	28133858	28133874	protein_coding	Dnahc5	intron	ENSMUSG00000022262	ProperStrand	10	1	-16.1472
chr18	80408417	80408509	protein_coding	Gm16286	exon	ENSMUSG00000024571	NonProperStrand	20	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.8512
chr12	19852634	19852762	SINE	RSINE1	B4	chr12RSINE119852658	NonProperStrand	3	chr12	17768616	17768640	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-14.9608
chr5	145184589	145187166	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	chr7	127215019	127215350	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	147	6	-20.9492
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr9	40804021	40804082	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-7.8036
chr12	105803810	105803910	Simple_repeat	(TATG)n	Simple_repeat	chr12(TATG)n105803712	ProperStrand	1	chr17	5164986	5165076	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-inf
chr11	86981208	86981280	protein_coding	Trim37	intron	ENSMUSG00000018548	NonProperStrand	72	chr17	47795394	47795446	protein_coding	Gm20517	intron	ENSMUSG00000023984	ProperStrand	54	1	-11.8681
chr1	136364889	136364963	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr13	97190543	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-6.0569
chr9	110281285	110281330	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr6	113075226	113075301	protein_coding	Setd5	intron	ENSMUSG00000034269	NonProperStrand	20	1	-9.7802
chr5	115552774	115552996	SINE	B3A	B2	chr5B3A115552714	ProperStrand	4	chr5	115553012	115553112	pseudogene	Gm13826	.	ENSMUSG00000072692	NonProperStrand	36	4	-inf
chr13	62146704	62146742	LINE	Lx2	L1	chr13Lx262145709	NonProperStrand	2	chr10	18571844	18571905	protein_coding	Perp	intron	ENSMUSG00000019851	ProperStrand	18	1	-21.0482
chr2	34742021	34742067	protein_coding	D730039F16Rik	intron	ENSMUSG00000026870	NonProperStrand	9	chr12	54046363	54046427	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-13.5169
chr3	95658825	95658955	protein_coding	Prpf3	intron	ENSMUSG00000015748	NonProperStrand	78	chr1	69132253	69132273	protein_coding	Erbb4	intron	ENSMUSG00000062209	ProperStrand	16	1	-14.1847
chr13	24822467	24822492	protein_coding	Fam65b	intron	ENSMUSG00000036006	NonProperStrand	42	chr17	23733698	23733767	protein_coding	Zfp13	intron	ENSMUSG00000062012	NonProperStrand	14	1	-15.7125
chr2	22744872	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	119277864	119277959	protein_coding	Xylb	intron	ENSMUSG00000035769	NonProperStrand	58	1	-6.8757
chr13	40892230	40892320	LTR	MYSERV6-int	ERVK	chr13MYSERV6-int40892039	NonProperStrand	1	chr13	40892349	40892449	LTR	ORR1A2	MaLR	chr13ORR1A240892318	ProperStrand	1	1	-inf
chr17	39847207	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	88058026	88058377	protein_coding	Rhbg	intron	ENSMUSG00000001417	ProperStrand	5	3	-11.5443
chr5	100496216	100496282	protein_coding	Enoph1	intron	ENSMUSG00000029326	NonProperStrand	28	chr19	32212202	32212243	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	2	-18.3486
chr13	96649236	96649330	protein_coding	Iqgap2	intron	ENSMUSG00000021676	ProperStrand	82	chr16	30308259	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-11.4627
chr4	58039238	58039338	SINE	B1_Mur3	Alu	chr4B1_Mur358039249	ProperStrand	1	chr4	58039357	58039447	Simple_repeat	(TTTCC)n	Simple_repeat	chr4(TTTCC)n58039378	NonProperStrand	1	1	-inf
chr5	129560093	129560183	LTR	MTE2b	MaLR	chr5MTE2b129560057	NonProperStrand	1	chr5	129560187	129560287	Low_complexity	GA-rich	Low_complexity	chr5GA-rich129560211	ProperStrand	1	1	-inf
chr9	22065710	22065800	SINE	B1_Mus2	Alu	chr9B1_Mus222065648	NonProperStrand	1	chr9	22058244	22058344	protein_coding	Zfp599	intron	ENSMUSG00000062794	ProperStrand	6	1	-inf
chr17	39846750	39846837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	23550258	23550309	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int23549476	ProperStrand	5	1	-3.1907
chr17	39846851	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	134000434	134000541	SINE	B1_Mur4	Alu	chr4B1_Mur4134000437	ProperStrand	1	1	-inf
chr8	105735024	105735114	LTR	ORR1C2	MaLR	chr8ORR1C2105734833	ProperStrand	1	chr8	105735279	105735379	LTR	ORR1C2	MaLR	chr8ORR1C2105735229	NonProperStrand	1	1	-inf
chr14	63623800	63623867	LTR	ORR1B2	MaLR	chr14ORR1B263623809	ProperStrand	1	chr14	63621684	63621726	Simple_repeat	(TG)n	Simple_repeat	chr14(TG)n63621675	ProperStrand	1	1	-inf
chr7	126795785	126795999	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr3	94493859	94493926	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-8.7400
chr1	52178789	52178880	protein_coding	Stat1	intron	ENSMUSG00000026104	NonProperStrand	47	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.0563
chr17	39847439	39848029	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	109012007	109012048	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	9	-5.9959
chr4	117374241	117374331	LTR	MMVL30-int	ERV1	chr4MMVL30-int117374216	ProperStrand	3	chr4	117374349	117374449	LTR	RLTR6_Mm	ERV1	chr4RLTR6_Mm117374328	ProperStrand	3	3	-inf
chrX	70913562	70913662	LINE	L1_Mm	L1	chrXL1_Mm70913454	ProperStrand	1	chrX	70913865	70913955	LINE	Lx	L1	chrXLx70913850	NonProperStrand	1	1	-inf
chr11	115123814	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	24	chr4	119286532	119286669	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	1	-12.4701
chr19	7482349	7482439	LTR	ORR1A0	MaLR	chr19ORR1A07482367	NonProperStrand	1	chr19	7482243	7482343	LTR	RLTR15	ERVK	chr19RLTR157482043	ProperStrand	1	1	-inf
chr19	6056996	6057675	protein_coding	Mrpl49	exon	ENSMUSG00000007338	ProperStrand	8	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-11.9789
chr11	103190402	103192039	LTR	MLT1A	MaLR	chr11MLT1A103191878	ProperStrand	1	chr11	103186698	103189958	SINE	MIRb	MIR	chr11MIRb103189901	NonProperStrand	1	1	-inf
chr11	69073539	69073563	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	chr1	72255081	72255194	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-12.8160
chr2	28522639	28522731	protein_coding-noncoding	Tsc1	utr5	ENSMUSG00000026812	ProperStrand	14	chr16	94336548	94336599	protein_coding	Sim2	intron	ENSMUSG00000062713	NonProperStrand	112	1	-13.7335
chr4	55527309	55527367	SINE	MIRb	MIR	chr4MIRb55527261	ProperStrand	1	chr1	136935205	136935266	protein_coding	Lgr6	intron	ENSMUSG00000042793	ProperStrand	106	1	-inf
chr10	81565648	81565675	LTR	ORR1A4-int	MaLR	chr10ORR1A4-int81564612	NonProperStrand	5	chr17	39847749	39847800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr1	132618265	132618352	protein_coding	Pfkfb2	intron	ENSMUSG00000026409	ProperStrand	26	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.2455
chr9	123461931	123461954	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	53471456	53471546	protein_coding	Cul5	intron	ENSMUSG00000032030	ProperStrand	18	1	-3.2529
chr10	56812653	56812743	LTR	MTC	MaLR	chr10MTC56812484	NonProperStrand	1	chr10	56812818	56812918	LTR	RLTR12B	ERVK	chr10RLTR12B56812746	NonProperStrand	1	1	-inf
chr15	99707348	99707696	LTR	MER57D	ERV1	chr15MER57D99707249	NonProperStrand	2	chr16	8689660	8689694	protein_coding	Usp7	utr3	ENSMUSG00000022710	ProperStrand	321	1	-16.1197
chr4	151051068	151056172	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr15	76064975	76065051	protein_coding	Parp10	intron	ENSMUSG00000063268	ProperStrand	64	1	-9.2436
chr16	23111176	23111224	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr9	40804779	40804837	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.3653
chr17	39847249	39847344	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	38553749	38553812	SINE	MIR	MIR	chr5MIR38553722	NonProperStrand	3	1	-5.4882
chr9	37497288	37497340	LINE	Lx8	L1	chr9Lx837497125	NonProperStrand	4	chr9	37497368	37497424	Simple_repeat	(TA)n	Simple_repeat	chr9(TA)n37497356	ProperStrand	3	2	-inf
chr11	4569998	4570017	protein_coding	Ascc2	intron	ENSMUSG00000020412	ProperStrand	8	chr11	48800865	48800931	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-13.4083
chr19	4181847	4181947	SINE	B1_Mur1	Alu	chr19B1_Mur14181849	ProperStrand	1	chr19	4181732	4181822	SINE	PB1D9	Alu	chr19PB1D94181690	ProperStrand	1	1	-inf
chr9	123461799	123461866	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr10	61648776	61680187	protein_coding	Tspan15	intron	ENSMUSG00000037031	NonProperStrand	51	3	-4.4188
chr17	39847531	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	17299282	17299416	LTR	RLTR13D6	ERVK	chrXRLTR13D617298845	ProperStrand	1	1	-inf
chr17	39846759	39846831	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	155502278	155502366	SINE	B1_Mur3	Alu	chr4B1_Mur3155502227	ProperStrand	1	1	-inf
chr17	25262371	25262426	Simple_repeat	(GGAGAA)n	Simple_repeat	chr17(GGAGAA)n25262378	NonProperStrand	6	chr17	25262027	25262047	protein_coding	Ptx4	exon	ENSMUSG00000044172	NonProperStrand	27	1	-18.5041
chr6	53060613	53060703	LINE	Lx8	L1	chr6Lx853060616	NonProperStrand	4	chr6	53060507	53060607	LTR	RMER4A	ERVK	chr6RMER4A53060138	NonProperStrand	4	4	-inf
chr5	115327420	115330513	protein_coding	4930519G04Rik	intron	ENSMUSG00000029564	ProperStrand	28	chr2	5379284	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.0377
chr17	39847276	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	142556116	142556132	LTR	ORR1D2	MaLR	chr7ORR1D2142556083	NonProperStrand	1	1	-inf
chr11	80031828	80031925	protein_coding	Rhot1	intron	ENSMUSG00000017686	ProperStrand	27	chr9	118674951	118675001	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.5619
chr17	39847803	39847904	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	134940416	134940442	SINE	B3	B2	chr5B3134940391	ProperStrand	5	1	-3.2379
chr8	119916098	119916190	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	chr13	97190567	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.4537
chr17	39847348	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	155622677	155622761	LTR	RMER17B	ERVK	chr4RMER17B155622053	ProperStrand	1	1	-inf
chr12	110499011	110499081	LINE	L1Md_F2	L1	chr12L1Md_F2110497063	NonProperStrand	25	chr12	110511262	110511300	LTR	RMER19B	ERVK	chr12RMER19B110511081	NonProperStrand	8	1	-17.9363
chr12	99305991	99306041	LINE	Lx3A	L1	chr12Lx3A99304470	ProperStrand	2	chr17	39846733	39846773	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39847611	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	91715655	91715687	lincRNA	Gm10785	exon	ENSMUSG00000085169	ProperStrand	4	1	-3.7035
chr8	71617569	71618099	protein_coding	Atp6v1b2	intron	ENSMUSG00000006273	ProperStrand	70	chr17	71752037	71752053	protein_coding	Smchd1	intron	ENSMUSG00000024054	NonProperStrand	5	1	-16.9251
chr12	79468261	79468291	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	chr9	15314843	15314967	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-5.3796
chr4	116551814	116551832	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	chr1	118438854	118438972	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	1	-8.6887
chr12	79705780	79705882	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	chr11	26408621	26408679	protein_coding	Vrk2	intron	ENSMUSG00000064090	NonProperStrand	29	1	-8.3715
chr14	21557612	21557658	protein_coding	Camk2g	intron	ENSMUSG00000021820	NonProperStrand	161	chr14	21549660	21549716	protein_coding	Ndst2	utr5	ENSMUSG00000039308	NonProperStrand	56	1	-10.1806
chr5	146261265	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr3	95032873	95032919	protein_coding	Cdc42se1	utr5	ENSMUSG00000046722	NonProperStrand	26	1	-9.5619
chr16	13643098	13643198	protein_coding	Parn	intron	ENSMUSG00000022685	ProperStrand	65	chr2	121138066	121138156	protein_coding	Ppip5k1	exon	ENSMUSG00000033526	ProperStrand	5	1	-17.0890
chr10	61113593	61113620	protein_coding	Ppa1	intron	ENSMUSG00000020089	NonProperStrand	13	chr1	55269316	55269431	protein_coding	Rftn2	intron	ENSMUSG00000025978	ProperStrand	9	2	-inf
chr14	57829853	57829957	LINE	L1_Mus3	L1	chr14L1_Mus357827886	NonProperStrand	3	chr1	65345310	65345328	protein_coding	Pth2r	intron	ENSMUSG00000025946	ProperStrand	8	1	-20.8155
chr11	6620318	6620798	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	14	chr17	39846452	39847144	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-4.3574
chr4	31186755	31186845	LTR	MER77	ERVL	chr4MER7731186763	ProperStrand	1	chr4	31186662	31186762	LTR	MLT2B3	ERVL	chr4MLT2B331186266	ProperStrand	1	1	-inf
chr17	26925350	26925461	protein_coding	Bnip1	intron	ENSMUSG00000024191	ProperStrand	26	chr2	152261902	152261923	protein_coding	6820408C15Rik	intron	ENSMUSG00000032680	ProperStrand	28	1	-15.2696
chr9	123461905	123461995	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	116539469	116550601	protein_coding	St6galnac2	intron	ENSMUSG00000057286	ProperStrand	31	2	-4.1009
chr12	4560507	4560556	LTR	ORR1A1	MaLR	chr12ORR1A14560407	NonProperStrand	1	chr12	4558818	4558888	SINE	B4A	B4	chr12B4A4558798	NonProperStrand	1	1	-inf
chr14	86781157	86781257	LTR	MTEa	MaLR	chr14MTEa86781089	ProperStrand	1	chr14	86781251	86781341	SINE	B3A	B2	chr14B3A86781277	ProperStrand	1	1	-inf
chr5	38199307	38199397	LTR	RLTR11A	ERVK	chr5RLTR11A38199327	NonProperStrand	6	chr5	38199177	38199277	SINE	RSINE1	B4	chr5RSINE138199114	NonProperStrand	6	6	-inf
chrX	77535536	77535626	LINE	L1_Mus3	L1	chrXL1_Mus377533432	NonProperStrand	9	chrX	77535697	77535797	LTR	MTA_Mm	MaLR	chrXMTA_Mm77535640	NonProperStrand	3	3	-inf
chr8	72158056	72158156	LTR	RMER15	ERVL	chr8RMER1572157948	ProperStrand	2	chr7	109521277	109521367	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	2	-inf
chr10	111295669	111295687	LTR	MLT1E3	MaLR	chr10MLT1E3111295629	NonProperStrand	1	chr17	39848200	39848336	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr17	39847082	39847131	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	53395910	53395969	protein_coding	Mxi1	intron	ENSMUSG00000025025	ProperStrand	4	1	-4.8204
chr15	11481233	11481333	LINE	L1_Mus3	L1	chr15L1_Mus311480473	ProperStrand	1	chr15	11481686	11481776	LTR	ORR1D1	MaLR	chr15ORR1D111481691	NonProperStrand	1	1	-inf
chr17	39847736	39847790	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	70540581	70540645	protein_coding	Adam10	intron	ENSMUSG00000054693	NonProperStrand	5	1	-3.2379
chr15	18353373	18353473	LINE	L1Md_F2	L1	chr15L1Md_F218352890	ProperStrand	1	chr15	18353688	18353778	LTR	RLTR13B1	ERVK	chr15RLTR13B118353578	NonProperStrand	1	1	-inf
chr6	50565351	50565514	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm50565170	NonProperStrand	3	chr2	52716727	52716774	Low_complexity	GC_rich	Low_complexity	chr2GC_rich52716736	NonProperStrand	1	1	-inf
chr19	52825762	52825779	LINE	L1_Mus3	L1	chr19L1_Mus352825524	NonProperStrand	1	chr17	39846748	39846789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	16633922	16633940	LINE	L1Md_T	L1	chr12L1Md_T16629539	ProperStrand	1	chr2	26422558	26422672	LINE	Lx	L1	chr2Lx26422408	ProperStrand	3	1	-inf
chr4	155529382	155529409	LTR	RMER13B	ERVK	chr4RMER13B155529314	NonProperStrand	2	chr9	123461892	123461990	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr3	68604549	68604650	LTR	RLTR44-int	ERVK	chr3RLTR44-int68603970	ProperStrand	4	chr11	26337634	26337666	protein_coding	Fancl	intron	ENSMUSG00000004018	NonProperStrand	5	1	-inf
chr17	39843488	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	107088579	107088633	Simple_repeat	(GA)n	Simple_repeat	chr8(GA)n107088585	NonProperStrand	1	1	-inf
chr7	109677450	109677540	LINE	Lx5	L1	chr7Lx5109677471	ProperStrand	1	chr7	109677341	109677441	SINE	B2_Mm1t	B2	chr7B2_Mm1t109677265	ProperStrand	1	1	-inf
chr17	39847160	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	21950749	21950776	SINE	B1F	Alu	chr13B1F21950654	NonProperStrand	1	1	-inf
chr13	51704949	51705039	SINE	B1_Mm	Alu	chr13B1_Mm51704897	NonProperStrand	1	chr13	51704766	51704866	SINE	B3	B2	chr13B351704682	NonProperStrand	1	1	-inf
chr5	146261278	146261318	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr5	131918392	131918442	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-3.2257
chr6	122319966	122320031	LINE	L1M5	L1	chr6L1M5122319973	NonProperStrand	13	chr4	117155773	117155848	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	1	-12.3593
chrX	60546017	60546082	LINE	Lx4B	L1	chrXLx4B60545808	ProperStrand	1	chr2	129112811	129113515	protein_coding	Ckap2l	intron	ENSMUSG00000048327	NonProperStrand	23	1	-inf
chr3	16205388	16213971	LINE	L1MA4A	L1	chr3L1MA4A16205185	ProperStrand	2	chr10	62806889	62806983	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	2	-inf
chr3	9488201	9488264	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	chr12	110692810	110692840	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	1	-3.7743
chr9	88521393	88521433	lincRNA	Gm17683	intron	ENSMUSG00000091564	NonProperStrand	40	chr7	133096123	133096204	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-5.9767
chr19	12786121	12786221	antisense	Gm15962	.	ENSMUSG00000084981	ProperStrand	25	chr17	80926894	80926984	protein_coding	Cdkl4	intron	ENSMUSG00000033966	NonProperStrand	6	3	-inf
chr6	66090195	66090285	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int66090016	ProperStrand	1	chr6	66090477	66090577	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int66090403	ProperStrand	1	1	-inf
chr10	121174160	121174260	SINE	B3	B2	chr10B3121174118	ProperStrand	1	chr10	121173892	121173982	SINE	B3A	B2	chr10B3A121173912	ProperStrand	1	1	-inf
chr3	101433151	101433242	LINE	L1M3	L1	chr3L1M3101433035	NonProperStrand	4	chr3	101433250	101433350	LTR	ORR1D1	MaLR	chr3ORR1D1101433225	NonProperStrand	8	4	-inf
chr9	37489665	37489759	LTR	MTA_Mm	MaLR	chr9MTA_Mm37489509	NonProperStrand	10	chr9	118674949	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-9.6021
chr15	77761351	77761409	LTR	RLTR18B	ERVK	chr15RLTR18B77761280	ProperStrand	3	chr9	123461989	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr11	109011655	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	64178287	64178393	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-3.1779
chr5	77009358	77009448	LTR	ORR1A4	MaLR	chr5ORR1A477009152	NonProperStrand	1	chr5	77063343	77063443	protein_coding	Cep135	intron	ENSMUSG00000036403	ProperStrand	2	1	-inf
chrX	59144879	59144979	LINE	L1_Mus2	L1	chrXL1_Mus259139932	NonProperStrand	1	chrX	59145069	59145159	LINE	MusHAL1	L1	chrXMusHAL159145043	NonProperStrand	1	1	-inf
chr17	39846661	39846706	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	47074313	47074410	LTR	RMER16	ERVK	chr18RMER1647073961	NonProperStrand	1	1	-inf
chr17	13786608	13786663	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	chr3	41442556	41442625	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	1	-7.6289
chr2	155893976	155894066	protein_coding-noncoding	Spag4	utr5	ENSMUSG00000038180	ProperStrand	1	chr2	155894119	155894219	protein_coding	Spag4	exon	ENSMUSG00000038180	ProperStrand	1	1	-inf
chr14	12193430	12193451	LTR	ORR1E	MaLR	chr14ORR1E12193367	ProperStrand	1	chr17	3185989	3186066	protein_coding	Scaf8	intron	ENSMUSG00000046201	ProperStrand	73	1	-inf
chr3	81068657	81068747	LINE	L1_Mus3	L1	chr3L1_Mus381068303	NonProperStrand	1	chr3	81068747	81068847	LINE	L1_Rod	L1	chr3L1_Rod81068765	NonProperStrand	1	1	-inf
chr9	123461807	123461835	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	153684437	153684455	protein_coding	Sun5	intron	ENSMUSG00000027480	NonProperStrand	2	1	-8.0983
chr17	39845847	39845920	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr7	81529386	81529449	protein_coding	Slco3a1	intron	ENSMUSG00000025790	NonProperStrand	32	1	-3.0675
chr7	19473937	19474027	protein_coding	Pglyrp1	intron	ENSMUSG00000030413	ProperStrand	7	chr7	19474022	19478367	protein_coding	Ccdc61	intron	ENSMUSG00000074358	NonProperStrand	2	2	-inf
chr5	146261268	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	133681011	133681097	protein_coding-noncoding	Ubxn11	utr5	ENSMUSG00000012126	NonProperStrand	24	1	-9.7247
chr13	49472366	49472414	protein_coding	Bicd2	intron	ENSMUSG00000037933	NonProperStrand	57	chr1	131478762	131478860	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-9.2739
chr2	12404645	12404776	LINE	Lx4B	L1	chr2Lx4B12404458	ProperStrand	1	chr8	64521939	64521956	LINE	L1_Mm	L1	chr8L1_Mm64519771	NonProperStrand	1	1	-inf
chr4	85395301	85395382	lincRNA	Gm12680	intron	ENSMUSG00000087349	ProperStrand	49	chr2	90395147	90395169	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-10.1288
chr1	31486212	31486303	LINE	L1Md_A	L1	chr1L1Md_A31486180	ProperStrand	1	chr1	31485953	31486053	LINE	MusHAL1	L1	chr1MusHAL131485566	NonProperStrand	1	1	-inf
chrX	101447706	101447820	LINE	Lx7	L1	chrXLx7101447139	ProperStrand	5	chr3	90028668	90028706	protein_coding	Rab13	intron	ENSMUSG00000027935	NonProperStrand	20	1	-19.9009
chr5	29224209	29224309	lincRNA	9530036O11Rik	intron	ENSMUSG00000086663	NonProperStrand	35	chr15	80080445	80080535	protein_coding	Smcr7l	exon	ENSMUSG00000022412	NonProperStrand	429	1	-9.1713
chr11	86152301	86152376	protein_coding	Med13	intron	ENSMUSG00000034297	ProperStrand	27	chr3	153293881	153293950	protein_coding	St6galnac3	intron	ENSMUSG00000052544	ProperStrand	282	1	-10.5346
chr10	30801196	30801277	LINE	L1Md_F2	L1	chr10L1Md_F230800629	NonProperStrand	1	chr11	109011655	109011712	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	1	-inf
chr9	123461822	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	78175387	78175439	protein_coding	Omt2b	utr5	ENSMUSG00000038750	NonProperStrand	30	2	-4.1898
chr11	100930119	100930220	LTR	RMER19C	ERVK	chr11RMER19C100930016	ProperStrand	1	chr11	100929877	100929967	SINE	PB1D7	Alu	chr11PB1D7100929862	ProperStrand	1	1	-inf
chr5	146261265	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	106688324	106688389	protein_coding	Rad54l2	intron	ENSMUSG00000040661	ProperStrand	29	1	-9.3403
chr5	33487121	33487149	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-3.0302
chr16	24791245	24791345	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr19	37223014	37223104	protein_coding	Cpeb3	intron	ENSMUSG00000039652	NonProperStrand	28	1	-10.6621
chr1	134622452	134622502	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr17	27941108	27941195	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	NonProperStrand	106	1	-8.2521
chr14	19800900	19801000	LINE	L1MA10	L1	chr14L1MA1019800900	ProperStrand	1	chr14	19800692	19800782	LINE	L1ME1	L1	chr14L1ME119800542	ProperStrand	1	1	-inf
chr10	71284929	71284945	LINE	L1Md_A	L1	chr10L1Md_A71281127	ProperStrand	5	chr19	41771429	41771551	protein_coding	Slit1	intron	ENSMUSG00000025020	ProperStrand	30	1	-18.5676
chr17	39847442	39847544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	76863395	76863412	protein_coding	Ccdc141	intron	ENSMUSG00000044033	ProperStrand	5	1	-3.2379
chr17	39846807	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	146613433	146618578	SINE	RSINE1	B4	chr6RSINE1146613979	NonProperStrand	1	1	-inf
chr6	43336250	43336340	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	chr12	80682374	80682474	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-10.7095
chr7	112093356	112093387	LINE	L1Md_F2	L1	chr7L1Md_F2112092803	NonProperStrand	1	chr17	39846464	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	35210971	35210987	lincRNA	1810058I24Rik	intron	ENSMUSG00000073155	ProperStrand	16	chr17	50195523	50195539	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	12	1	-17.9872
chr13	44869574	44869676	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr7	134914572	134914616	protein_coding	Orai3	intron	ENSMUSG00000043964	ProperStrand	40	1	-5.2770
chr17	39847611	39847658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	31253378	31253563	protein_coding	Preb	utr3	ENSMUSG00000045302	ProperStrand	3	1	-4.3512
chr5	110327714	110327804	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110327396	ProperStrand	4	chr5	110327820	110327920	SINE	B1_Mus1	Alu	chr5B1_Mus1110327809	ProperStrand	3	3	-inf
chr2	5379293	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr11	69917306	69917724	protein_coding	Asgr2	intron	ENSMUSG00000040963	NonProperStrand	118	2	-5.6181
chr12	78350925	78351020	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr18	12991379	12991404	protein_coding	Osbpl1a	intron	ENSMUSG00000044252	NonProperStrand	72	1	-5.5387
chr7	4639751	4639913	SINE	ID_B1	B4	chr7ID_B14639703	ProperStrand	4	chr9	123461964	123462024	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr2	27381051	27381141	protein_coding	Wdr5	intron	ENSMUSG00000026917	NonProperStrand	37	chr2	27353538	27353638	protein_coding	Brd3	intron	ENSMUSG00000026918	ProperStrand	76	1	-12.5239
chr3	90087835	90087925	SINE	B3	B2	chr3B390087810	ProperStrand	4	chr3	90087954	90088054	SINE	B3A	B2	chr3B3A90087977	ProperStrand	1	1	-inf
chr8	48515995	48516044	lincRNA	4930448N21Rik	intron	ENSMUSG00000086634	ProperStrand	141	chr17	21883969	21884028	protein_coding	Zfp229	utr3	ENSMUSG00000061544	NonProperStrand	9	1	-14.1977
chr8	73351264	73351303	SINE	B2_Mm1a	B2	chr8B2_Mm1a73351229	ProperStrand	1	chr6	87843747	87843814	protein_coding-noncoding	Copg	utr5	ENSMUSG00000030058	NonProperStrand	26	1	-inf
chr1	133656133	133656250	protein_coding	Slc26a9	intron	ENSMUSG00000042268	NonProperStrand	64	chr7	99481761	99481785	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-7.2976
chr2	25443142	25443377	protein_coding-noncoding	B230208H17Rik	utr3	ENSMUSG00000015087	NonProperStrand	7	chr2	25443049	25443141	protein_coding	B230208H17Rik	exon	ENSMUSG00000015087	NonProperStrand	22	7	-inf
chr6	61262137	61262227	protein_coding-noncoding	Fam190a	utr5	ENSMUSG00000039578	NonProperStrand	3	chr6	61262024	61262124	protein_coding	Fam190a	exon	ENSMUSG00000039578	NonProperStrand	37	3	-inf
chr17	39848426	39848555	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	26841131	26841148	SINE	B3	B2	chr17B326841086	NonProperStrand	1	1	-inf
chr15	85099037	85099137	protein_coding	Fbln1	intron	ENSMUSG00000006369	NonProperStrand	34	chr9	59428428	59428518	protein_coding	Celf6	intron	ENSMUSG00000032297	NonProperStrand	8	1	-17.2797
chr17	39846749	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	128035674	128036536	SINE	B3	B2	chr10B3128036327	ProperStrand	1	1	-inf
chr2	156208024	156208131	LINE	L1MC1	L1	chr2L1MC1156208000	ProperStrand	1	chr2	156208442	156208465	LTR	ORR1B2	MaLR	chr2ORR1B2156208159	ProperStrand	1	1	-inf
chr15	99998231	100012110	protein_coding	Dip2b	intron	ENSMUSG00000023026	ProperStrand	60	chr9	123461838	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-3.8726
chr15	8638537	8638607	protein_coding	Slc1a3	intron	ENSMUSG00000005360	ProperStrand	20	chr6	128455092	128455132	protein_coding	Pzp	intron	ENSMUSG00000030359	NonProperStrand	26	1	-15.9609
chr11	50323993	50324025	LINE	L1MD	L1	chr11L1MD50323958	NonProperStrand	1	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr5	97389154	97389252	LINE	L1ME3	L1	chr5L1ME397389177	ProperStrand	3	chr9	123461876	123461900	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr3	104159711	104159793	protein_coding	Gm5546	intron	ENSMUSG00000022187	ProperStrand	4	chr2	119958449	119958524	protein_coding	Ehd4	intron	ENSMUSG00000027293	NonProperStrand	78	1	-17.1810
chr17	39846428	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	121841332	121841453	SINE	B2_Mm2	B2	chr5B2_Mm2121841309	ProperStrand	1	1	-inf
chr11	88928496	88928581	lincRNA	A930013B10Rik	intron	ENSMUSG00000063109	NonProperStrand	2	chr4	11254174	11254191	lincRNA	Gm16652	intron	ENSMUSG00000086492	ProperStrand	2	1	-19.8939
chrX	161902663	161902727	LINE	Lx2	L1	chrXLx2161902194	ProperStrand	1	chr11	95961724	95961798	protein_coding	Calcoco2	intron	ENSMUSG00000006056	ProperStrand	64	1	-inf
chr8	19701591	19701691	Low_complexity	CT-rich	Low_complexity	chr8CT-rich19701557	ProperStrand	1	chr8	19701464	19701554	SINE	ID4_	ID	chr8ID4_19701455	ProperStrand	1	1	-inf
chr19	40617103	40617178	SINE	RSINE1	B4	chr19RSINE140617097	NonProperStrand	1	chr12	76822205	76822222	protein_coding	Sgpp1	intron	ENSMUSG00000021054	NonProperStrand	17	1	-inf
chr5	3157320	3157410	DNA	Looper	PiggyBac	chr5Looper3157260	ProperStrand	1	chr5	3157119	3157219	LINE	L1Md_F2	L1	chr5L1Md_F23156928	ProperStrand	1	1	-inf
chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr7	19696614	19696644	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-4.1459
chr14	36921712	36921812	LINE	Lx9	L1	chr14Lx936921641	NonProperStrand	1	chr14	36921397	36921487	LTR	ORR1D1	MaLR	chr14ORR1D136921137	ProperStrand	1	1	-inf
chr1	161035862	161036124	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr17	39845835	39846200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	2	-4.4915
chr6	3201470	3201547	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	140041221	140041240	protein_coding	Mettl10	intron	ENSMUSG00000030960	NonProperStrand	3	1	-9.0398
chr8	24725728	24725744	LINE	Lx7	L1	chr8Lx724725363	NonProperStrand	1	chr9	109078341	109082033	LTR	RMER16-int	ERVK	chr9RMER16-int109077612	ProperStrand	10	1	-inf
chr1	91083545	91083573	SINE	B1_Mur1	Alu	chr1B1_Mur191083503	ProperStrand	1	chr2	39004111	39004149	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	1	-inf
chr4	133132254	133132375	protein_coding	Gpatch3	intron	ENSMUSG00000028850	ProperStrand	7	chr2	32963029	32963065	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-13.3257
chr2	144812672	144812772	LTR	MLT1G	MaLR	chr2MLT1G144812648	NonProperStrand	1	chr2	144812581	144812671	LTR	MTD	MaLR	chr2MTD144812559	ProperStrand	1	1	-inf
chr2	103768848	103768897	LINE	Lx8	L1	chr2Lx8103768382	ProperStrand	2	chr17	39846952	39847048	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39846411	39846452	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	32775592	32775688	SINE	B4A	B4	chr17B4A32775573	ProperStrand	1	1	-inf
chr11	69919256	69919318	protein_coding	Asgr2	exon	ENSMUSG00000040963	NonProperStrand	118	chr16	33057231	33057308	protein_coding	Rpl35a	utr5	ENSMUSG00000060636	ProperStrand	18	1	-13.1100
chr15	82192293	82194063	LTR	MTE2b	MaLR	chr15MTE2b82192316	NonProperStrand	1	chr15	82185388	82192250	SINE	B3	B2	chr15B382185304	NonProperStrand	1	1	-inf
chr3	69757581	69757681	DNA	Charlie24	MER1_type	chr3Charlie2469757603	ProperStrand	1	chr3	69757506	69757596	SINE	B4A	B4	chr3B4A69757331	NonProperStrand	1	1	-inf
chr4	43348014	43348033	protein_coding	Atp8b5	intron	ENSMUSG00000028457	ProperStrand	8	chr8	11625610	11625727	protein_coding	Ankrd10	intron	ENSMUSG00000031508	ProperStrand	164	1	-14.1450
chr11	98031280	98031380	protein_coding-noncoding	Med1	utr3	ENSMUSG00000018160	NonProperStrand	1	chr11	98031064	98031153	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	1	-inf
chr17	39843936	39844015	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr19	28995240	28995285	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	59	1	-4.0190
chr15	72994531	72994631	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	9	chr3	105361042	105361132	protein_coding	Kcnd3	intron	ENSMUSG00000040896	NonProperStrand	5	1	-inf
chr6	112629764	112629804	protein_coding	Rad18	intron	ENSMUSG00000030254	ProperStrand	76	chr6	84630366	84630446	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-9.3333
chr17	39846453	39846494	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	117243513	117243609	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n117243534	ProperStrand	1	1	-inf
chr2	181654882	181654898	LTR	RLTR6-int	ERV1	chr2RLTR6-int181654564	NonProperStrand	2	chr9	123462036	123462113	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	131472218	131472318	LTR	IAPEz-int	ERVK	chr2IAPEz-int131471616	ProperStrand	1	chr2	131472939	131473029	LTR	IAPEz-int	ERVK	chr2IAPEz-int131472637	ProperStrand	1	1	-inf
chr11	59566701	59566766	protein_coding	Mprip	intron	ENSMUSG00000005417	ProperStrand	15	chr10	127583890	127584322	protein_coding	Rbms2	intron	ENSMUSG00000040043	ProperStrand	38	1	-15.7876
chr5	34699571	34699605	SINE	B1F1	Alu	chr5B1F134699495	NonProperStrand	3	chr14	77575207	77575311	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	1	-15.6843
chr13	13132823	13132913	LINE	L1VL2	L1	chr13L1VL213132815	NonProperStrand	1	chr13	13132573	13132673	LINE	Lx9	L1	chr13Lx913132523	ProperStrand	1	1	-inf
chr12	111671778	111671880	LTR	RMER15	ERVL	chr12RMER15111671762	ProperStrand	5	chr17	39846462	39846508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr17	39848098	39848147	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	103672598	103672701	protein_coding	Fndc3c1	intron	ENSMUSG00000033737	NonProperStrand	7	1	-5.4467
chr13	9834327	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr4	99658106	99658157	protein_coding	Pgm2	intron	ENSMUSG00000025791	ProperStrand	5	1	-14.2762
chr17	39846660	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	32251098	32257606	lincRNA	Gm17276	intron	ENSMUSG00000090984	NonProperStrand	12	2	-3.1058
chr7	12930796	12930862	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr1	156051562	156051645	protein_coding	Zfp648	exon	ENSMUSG00000066797	ProperStrand	11	1	-14.9160
chr3	66443202	66443292	LINE	Lx2	L1	chr3Lx266442388	ProperStrand	1	chr3	66443361	66443461	LINE	Lx2	L1	chr3Lx266443330	ProperStrand	1	1	-inf
chr5	122306813	122306848	SINE	MIR	MIR	chr5MIR122306699	NonProperStrand	1	chr5	122304342	122304440	protein_coding	Fam109a	utr3	ENSMUSG00000044134	ProperStrand	20	1	-inf
chr5	147555779	147555963	protein_coding	Usp12	intron	ENSMUSG00000029640	NonProperStrand	11	chr12	67660707	67660799	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	2	-inf
chr13	51723621	51723637	LTR	RMER21B	ERV1	chr13RMER21B51723602	ProperStrand	1	chr17	39847850	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	1	-inf
chr4	43348014	43348034	protein_coding	Atp8b5	intron	ENSMUSG00000028457	ProperStrand	8	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.0749
chr2	172838012	172838102	protein_coding-noncoding	Rae1	utr5	ENSMUSG00000027509	ProperStrand	1	chr2	172838154	172838254	protein_coding	Rae1	exon	ENSMUSG00000027509	ProperStrand	1	1	-inf
chr2	14589148	14702636	protein_coding	Cacnb2	intron	ENSMUSG00000057914	NonProperStrand	12	chr2	14561947	14814848	protein_coding	Cacnb2	intron	ENSMUSG00000057914	ProperStrand	15	2	-inf
chr7	5409517	5409552	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	chr2	138285638	138285711	protein_coding	Btbd3	intron	ENSMUSG00000062098	ProperStrand	66	1	-15.1162
chr1	93429808	93429847	LTR	ORR1E	MaLR	chr1ORR1E93429770	ProperStrand	1	chr1	93424278	93424384	protein_coding	Traf3ip1	utr3	ENSMUSG00000034292	NonProperStrand	54	1	-inf
chr1	75859104	75859120	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n75859107	ProperStrand	3	chr15	102082012	102084167	protein_coding	Rarg	intron	ENSMUSG00000001288	NonProperStrand	44	1	-19.0086
chr16	11143905	11143995	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	chr9	56223768	56223868	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-5.5829
chr12	69158691	69159090	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	chr17	39847612	39848071	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	7	-6.9080
chr2	29950671	29950693	SINE	RSINE1	B4	chr2RSINE129950594	NonProperStrand	1	chr16	57391113	57391614	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	1	-inf
chr17	24907336	24907388	LINE	L1_Mur2	L1	chr17L1_Mur224906900	ProperStrand	1	chr6	30444535	30446628	protein_coding	Tmem209	intron	ENSMUSG00000029782	NonProperStrand	42	1	-inf
chr7	81821356	81821452	Simple_repeat	(TC)n	Simple_repeat	chr7(TC)n81821333	NonProperStrand	1	chr12	67667969	67668004	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr2	90395149	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-7.9847
chr18	77148902	77148949	LINE	L1_Mur2	L1	chr18L1_Mur277148913	ProperStrand	1	chr18	77149150	77149215	LINE	L1_Mus2	L1	chr18L1_Mus277149098	ProperStrand	2	1	-inf
chr9	118554572	118554690	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	chr11	108029562	108029581	protein_coding	Prkca	intron	ENSMUSG00000050965	ProperStrand	51	1	-9.8094
chr5	146261178	146261199	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	32356543	32356909	protein_coding	Brd4	intron	ENSMUSG00000024002	ProperStrand	47	1	-5.5389
chr15	83149702	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	chr7	48827640	48827696	protein_coding	Gm6871	intron	ENSMUSG00000090744	NonProperStrand	10	1	-14.0034
chr17	39843822	39843861	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	128618509	128618527	protein_coding	Adc	intron	ENSMUSG00000028789	NonProperStrand	3	1	-9.1352
chr13	33556765	33556783	LTR	ETnERV2-int	ERVK	chr13ETnERV2-int33556769	ProperStrand	1	chr17	39847652	39847684	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	59076318	59076334	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	20	chr11	107439661	107439787	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	1	-11.8348
chr2	181553158	181553258	protein_coding	Myt1	intron	ENSMUSG00000010505	ProperStrand	44	chr4	45033207	45033258	protein_coding	Polr1e	intron	ENSMUSG00000028318	ProperStrand	5	1	-17.8564
chr3	97158080	97158160	LINE	Lx7	L1	chr3Lx797158074	NonProperStrand	1	chrX	130463908	130463948	protein_coding	Srpx2	intron	ENSMUSG00000031253	NonProperStrand	2	1	-inf
chrX	132818889	132818989	LINE	L1Md_F2	L1	chrXL1Md_F2132818773	NonProperStrand	1	chrX	163523817	163523907	LTR	ORR1A2	MaLR	chrXORR1A2163523633	ProperStrand	1	1	-inf
chr5	140443070	140443136	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	81	chr12	41112701	41112767	protein_coding	Zfp277	intron	ENSMUSG00000055917	NonProperStrand	75	2	-17.2537
chr16	81830144	81830234	LINE	L1_Mur2	L1	chr16L1_Mur281829816	NonProperStrand	1	chr16	81830527	81830627	LINE	Lx2B	L1	chr16Lx2B81830474	ProperStrand	1	1	-inf
chr10	82617884	82617974	protein_coding	Chst11	intron	ENSMUSG00000034612	NonProperStrand	9	chr10	85705719	85705819	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	1	-15.2370
chr17	39848681	39848744	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr9	106431383	106431436	Other	RMER1A	Other	chr9RMER1A106431168	NonProperStrand	3	1	-7.6307
chr8	22634953	22634988	LTR	BGLII	ERVK	chr8BGLII22634922	ProperStrand	2	chr15	62185249	62185367	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	2	-inf
chr4	43492783	43492812	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr12	83951168	83951289	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	72	1	-6.7310
chr17	39847981	39848026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	53510649	53510699	LTR	IAPEz-int	ERVK	chr17IAPEz-int53509137	ProperStrand	2	1	-5.4040
chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr8	95716627	95716714	protein_coding	Ces1d	intron	ENSMUSG00000056973	NonProperStrand	52	1	-6.2531
chr15	55195829	55195864	protein_coding	Col14a1	intron	ENSMUSG00000022371	ProperStrand	77	chr2	49552822	49552886	protein_coding	Kif5c	intron	ENSMUSG00000026764	ProperStrand	25	1	-13.2959
chr16	43886684	43886716	protein_coding	Qtrtd1	intron	ENSMUSG00000022704	ProperStrand	26	chr18	84559224	84559346	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-11.2205
chr14	34219913	34219997	protein_coding	Mapk8	intron	ENSMUSG00000021936	ProperStrand	23	chr6	84637943	84637988	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-11.7487
chr16	30957464	30957564	protein_coding	AI480653	exon	ENSMUSG00000047434	NonProperStrand	5	chr16	31160201	31160291	protein_coding	Acap2	intron	ENSMUSG00000049076	NonProperStrand	7	1	-21.1751
chr5	146260994	146261017	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr14	27053696	27053744	protein_coding	Gm2135	intron	ENSMUSG00000092159	ProperStrand	34	1	-6.1779
chr3	22080611	22080711	protein_coding	Tbl1xr1	intron	ENSMUSG00000027630	ProperStrand	100	chr5	149048827	149049731	protein_coding	Mtus2	intron	ENSMUSG00000029651	ProperStrand	20	1	-13.2248
chr13	64066733	64066833	LINE	L1M4b	L1	chr13L1M4b64066614	NonProperStrand	1	chr13	67772084	67772174	protein_coding	Zfp738	exon	ENSMUSG00000048280	NonProperStrand	5	1	-inf
chr4	123539856	123542564	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int123540352	ProperStrand	12	chr4	123536259	123539860	protein_coding	4933427I04Rik	utr3	ENSMUSG00000073761	NonProperStrand	14	6	-20.1394
chr6	84239276	84239366	LTR	MLT1F2	MaLR	chr6MLT1F284239221	NonProperStrand	2	chr6	84239371	84239471	SINE	ID_B1	B4	chr6ID_B184239366	ProperStrand	2	2	-inf
chr11	102435382	102435472	SINE	B1_Mur4	Alu	chr11B1_Mur4102435400	NonProperStrand	3	chr11	102435762	102435862	SINE	RSINE1	B4	chr11RSINE1102435751	NonProperStrand	3	3	-inf
chr11	51634087	51634209	protein_coding	Phf15	intron	ENSMUSG00000020387	ProperStrand	71	chr1	194306095	194306113	protein_coding	Kcnh1	intron	ENSMUSG00000058248	NonProperStrand	16	1	-14.3779
chr3	90212686	90212708	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	chr6	94597189	94597290	protein_coding	Lrig1	intron	ENSMUSG00000030029	NonProperStrand	43	1	-14.1680
chr4	53446194	53446294	LTR	ORR1D1	MaLR	chr4ORR1D153446219	ProperStrand	1	chr4	53446082	53446172	Simple_repeat	(TA)n	Simple_repeat	chr4(TA)n53446095	ProperStrand	1	1	-inf
chr13	103908596	103908647	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	chr17	21529802	21529869	protein_coding	Zfp677	intron	ENSMUSG00000062743	ProperStrand	5	1	-15.4761
chr5	5681253	5681278	protein_coding	Steap2	intron	ENSMUSG00000015653	ProperStrand	10	chr15	83149687	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-14.0034
chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr2	156105118	156105188	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	96	1	-8.4859
chr9	123461957	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	47552234	47552285	protein_coding	1700001C19Rik	intron	ENSMUSG00000047150	NonProperStrand	4	1	-6.3300
chr2	13580092	13580156	protein_coding	St8sia6	intron	ENSMUSG00000003418	NonProperStrand	14	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-6.3946
chr8	6719291	6719308	LINE	L1Md_F2	L1	chr8L1Md_F26719132	NonProperStrand	1	chr2	20862009	20862069	protein_coding	Arhgap21	intron	ENSMUSG00000036591	ProperStrand	30	1	-inf
chr11	4769044	4769074	SINE	B1F	Alu	chr11B1F4768909	NonProperStrand	9	chr11	4778131	4778210	protein_coding	Nipsnap1	intron	ENSMUSG00000034285	NonProperStrand	68	1	-15.6472
chr13	51648197	51648263	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	33	chr4	132309940	132310032	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-10.9277
chr17	39846580	39846713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	23655579	23657365	protein_coding	Rel	intron	ENSMUSG00000020275	ProperStrand	11	2	-3.3422
chr17	39847183	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	13729478	13729579	protein_coding	Pla2g10	intron	ENSMUSG00000022683	ProperStrand	7	1	-3.6430
chr4	150337387	150337460	LINE	Lx4A	L1	chr4Lx4A150337307	ProperStrand	3	chr11	75740806	75740884	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	1	-16.4616
chr5	135393942	135393994	LTR	MLT1J2	MaLR	chr5MLT1J2135393948	ProperStrand	1	chr13	112578187	112578249	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr17	39847880	39847953	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	20943510	20943558	SINE	MIRc	MIR	chr2MIRc20943490	NonProperStrand	1	1	-inf
chr1	175888834	175888850	LINE	L1Md_F2	L1	chr1L1Md_F2175887331	NonProperStrand	2	chr11	74805597	74805671	protein_coding-noncoding	Smg6	utr5	ENSMUSG00000038290	ProperStrand	3	1	-20.8297
chr15	47539994	47540119	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr9	110281293	110281333	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	2	-9.3345
chr5	58071420	58071520	lincRNA	4932441J04Rik	intron	ENSMUSG00000085597	NonProperStrand	6	chr5	58045599	58045689	lincRNA	4932441J04Rik	intron	ENSMUSG00000085597	ProperStrand	9	1	-inf
chr11	48336194	48336294	DNA	RCHARR1	MER1_type	chr11RCHARR148336133	NonProperStrand	1	chr11	48336756	48336846	LTR	RMER17B	ERVK	chr11RMER17B48336637	NonProperStrand	1	1	-inf
chr17	39843498	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr13	93875623	93875696	protein_coding	Cmya5	intron	ENSMUSG00000047419	NonProperStrand	1	1	-inf
chr17	39846462	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	112126753	112126771	protein_coding	Cinp	intron	ENSMUSG00000021276	ProperStrand	2	1	-5.3533
chr10	77106195	77106256	protein_coding	Ube2g2	intron	ENSMUSG00000009293	NonProperStrand	37	chr10	76791049	76791108	protein_coding	Adarb1	intron	ENSMUSG00000020262	ProperStrand	178	1	-10.8161
chr14	121285773	121285866	SINE	B4A	B4	chr14B4A121285738	NonProperStrand	1	chr8	25653238	25653296	protein_coding	Ido2	intron	ENSMUSG00000031549	NonProperStrand	18	1	-inf
chr10	21704521	21704621	protein_coding	Sgk1	intron	ENSMUSG00000019970	NonProperStrand	3	chr10	20331835	20331925	protein_coding	Pde7b	intron	ENSMUSG00000019990	ProperStrand	10	1	-20.3377
chr11	53188170	53188241	protein_coding-noncoding	Aff4	utr5	ENSMUSG00000049470	NonProperStrand	2	chr11	53245791	53245852	protein_coding	Gdf9	intron	ENSMUSG00000018238	NonProperStrand	11	1	-21.2279
chr9	47732557	47732605	Simple_repeat	(CAGGG)n	Simple_repeat	chr9(CAGGG)n47732565	ProperStrand	1	chr2	166101204	166101262	lincRNA	Gm11468	intron	ENSMUSG00000084840	NonProperStrand	60	1	-inf
chr6	56786255	56786302	protein_coding	Fkbp9	intron	ENSMUSG00000029781	NonProperStrand	6	chr9	62792660	62792764	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-15.5655
chr6	24722555	24722645	LINE	L1MA7	L1	chr6L1MA724722344	NonProperStrand	1	chr6	24722776	24722876	LINE	Lx8	L1	chr6Lx824722783	NonProperStrand	1	1	-inf
chr8	105553452	105553542	LTR	RMER2	ERV1	chr8RMER2105553070	ProperStrand	2	chr9	96202781	96202881	protein_coding	Tfdp2	intron	ENSMUSG00000032411	ProperStrand	65	1	-20.1199
chr5	52904057	52904096	LTR	LTR16C	ERVL	chr5LTR16C52903772	NonProperStrand	1	chr5	52902963	52902992	Simple_repeat	(GGAA)n	Simple_repeat	chr5(GGAA)n52902902	ProperStrand	1	1	-inf
chr18	9877343	9877433	protein_coding	Colec12	utr3	ENSMUSG00000036103	NonProperStrand	14	chr7	116224871	116224971	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-13.8207
chr9	65201725	65201838	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr9	31156738	31156785	protein_coding	Prdm10	exon	ENSMUSG00000042496	NonProperStrand	152	1	-9.1934
chr18	25313681	25313771	protein_coding	5730494M16Rik	intron	ENSMUSG00000024269	NonProperStrand	28	chr9	120238135	120238235	protein_coding	Myrip	intron	ENSMUSG00000041794	ProperStrand	4	1	-23.3794
chr17	39846736	39846789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	110277605	110277668	LTR	MTD-int	MaLR	chr5MTD-int110277053	ProperStrand	1	1	-inf
chr9	123461801	123461843	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr17	36260043	36260117	protein_coding	Gm19684	intron	ENSMUSG00000092277	NonProperStrand	6	1	-5.4370
chr1	21578368	21578468	protein_coding	Kcnq5	intron	ENSMUSG00000028033	NonProperStrand	11	chr2	150242416	150242506	protein_coding	Zfp442	intron	ENSMUSG00000068130	ProperStrand	9	1	-19.6928
chr1	124479718	124479808	LINE	Lx4B	L1	chr1Lx4B124479258	NonProperStrand	1	chr1	124479948	124480048	SINE	B3A	B2	chr1B3A124479948	ProperStrand	1	1	-inf
chr6	121098565	121098679	DNA	MER58B	MER1_type	chr6MER58B121098496	ProperStrand	1	chr5	146261052	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr10	78986555	78986645	LTR	MT2B2	ERVL	chr10MT2B278986210	ProperStrand	1	chr10	79203298	79203398	protein_coding	Polrmt	intron	ENSMUSG00000020329	ProperStrand	1	1	-inf
chr12	57436257	57436319	protein_coding	Mbip	intron	ENSMUSG00000021028	NonProperStrand	9	chr4	25680308	25680359	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-15.8198
chr11	83275765	83275781	protein_coding	Mmp28	intron	ENSMUSG00000020682	ProperStrand	1	chr3	103126328	103126412	protein_coding	Trim33	intron	ENSMUSG00000033014	ProperStrand	59	1	-inf
chr5	26651127	26651217	LINE	L1_Mus1	L1	chr5L1_Mus126650526	NonProperStrand	1	chr5	26651343	26651443	LINE	L1_Mus1	L1	chr5L1_Mus126651315	NonProperStrand	1	1	-inf
chr14	30664610	30664642	Low_complexity	GA-rich	Low_complexity	chr14GA-rich30664593	ProperStrand	1	chr14	30666026	30666123	Simple_repeat	(TG)n	Simple_repeat	chr14(TG)n30666011	ProperStrand	2	1	-inf
chr5	125289683	125294015	protein_coding	Dnahc10	intron	ENSMUSG00000038011	NonProperStrand	81	chr16	67589694	67589794	protein_coding	Cadm2	intron	ENSMUSG00000064115	ProperStrand	39	1	-12.2883
chr4	24607691	24607756	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	chr12	102136847	102136864	protein_coding	Gpr68	intron	ENSMUSG00000047415	ProperStrand	5	1	-16.0957
chr10	127568661	127568710	protein_coding	Rbms2	utr3	ENSMUSG00000040043	ProperStrand	38	chr2	32580876	32580915	protein_coding	Sh2d3c	exon	ENSMUSG00000059013	ProperStrand	23	2	-inf
chr11	102433274	102433297	SINE	B1_Mus1	Alu	chr11B1_Mus1102433162	ProperStrand	3	chr12	21280559	21280624	protein_coding	Itgb1bp1	intron	ENSMUSG00000062352	NonProperStrand	2	1	-20.2824
chr2	26438501	26438579	protein_coding	Egfl7	intron	ENSMUSG00000026921	NonProperStrand	23	chr4	57878771	57878790	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	1	-12.4746
chr17	39847658	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	64940786	64940809	LTR	ORR1C1	MaLR	chr18ORR1C164940509	NonProperStrand	4	2	-6.7714
chr19	27424325	27425837	DNA	Charlie5	MER1_type	chr19Charlie527425743	ProperStrand	8	chr17	39847173	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr15	100395045	100395127	LTR	MERVL-int	ERVL	chr15MERVL-int100390032	ProperStrand	2	chr5	125168326	125168355	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	301	1	-16.2531
chr19	7467866	7482953	SINE	B3	B2	chr19B37471430	ProperStrand	1	chr8	70332338	70332354	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-inf
chr11	88931748	88931806	SINE	B1_Mur4	Alu	chr11B1_Mur488931754	ProperStrand	1	chr11	88932384	88932426	SINE	RSINE1	B4	chr11RSINE188932389	ProperStrand	1	1	-inf
chr7	19033056	19033146	LINE	Lx3B	L1	chr7Lx3B19032325	NonProperStrand	1	chr7	19033154	19033254	LINE	Lx3_Mus	L1	chr7Lx3_Mus19033121	ProperStrand	3	1	-inf
chr14	64688719	64688753	SINE	PB1D10	Alu	chr14PB1D1064688696	ProperStrand	1	chr9	21767322	21767408	protein_coding	Epor	intron	ENSMUSG00000006235	ProperStrand	5	1	-inf
chrX	114520895	114520985	LINE	L1Md_A	L1	chrXL1Md_A114520915	NonProperStrand	1	chrX	114520617	114520717	LINE	L1Md_F3	L1	chrXL1Md_F3114520495	ProperStrand	1	1	-inf
chr15	53204219	53204288	LINE	L1_Mus3	L1	chr15L1_Mus353204054	NonProperStrand	9	chr6	127993232	127993291	protein_coding	Tspan9	intron	ENSMUSG00000030352	ProperStrand	182	1	-13.6851
chr17	39847552	39847578	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	85332747	85332847	protein_coding	Acot2	intron	ENSMUSG00000021226	NonProperStrand	3	1	-4.3512
chr12	33151425	33151512	LINE	L1MEc	L1	chr12L1MEc33151450	ProperStrand	3	chr15	35882580	35882633	SINE	B3	B2	chr15B335882488	ProperStrand	2	2	-inf
chr2	50398416	50398432	LINE	Lx	L1	chr2Lx50397259	ProperStrand	5	chr9	123462053	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr3	35344380	35344401	LINE	L1_Mur3	L1	chr3L1_Mur335344375	NonProperStrand	1	chr17	64282023	64282054	protein_coding	Fer	intron	ENSMUSG00000000127	NonProperStrand	23	1	-inf
chr2	14265591	14265681	LINE	Lx2	L1	chr2Lx214265584	ProperStrand	1	chr2	14265242	14265342	LINE	Lx8	L1	chr2Lx814265155	ProperStrand	1	1	-inf
chr17	87433703	87433739	protein_coding	Cript	intron	ENSMUSG00000024146	NonProperStrand	16	chrX	152195134	152195235	protein_coding	Gm15155	intron	ENSMUSG00000055109	ProperStrand	121	1	-13.3034
chr16	24511784	24511852	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr5	135778663	135778737	protein_coding	Fkbp6	intron	ENSMUSG00000040013	NonProperStrand	36	1	-10.1525
chr17	39846822	39846882	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	103220143	103220159	protein_coding	Arhgap27	intron	ENSMUSG00000034255	ProperStrand	4	1	-3.6552
chr6	13856430	13856469	lincRNA	1110019D14Rik	intron	ENSMUSG00000084931	ProperStrand	28	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.4886
chr17	39847477	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	133658609	133660097	SINE	B1_Mm	Alu	chr7B1_Mm133658582	ProperStrand	1	1	-inf
chr6	120741905	120741948	protein_coding	Slc25a18	intron	ENSMUSG00000004902	ProperStrand	8	chr5	114852004	114852036	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-13.4426
chr12	110543557	110543624	LINE	Lx	L1	chr12Lx110542426	ProperStrand	5	chr12	87385206	87385263	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	132	1	-15.6155
chr17	39846750	39846840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	6272034	6272136	lincRNA	Gm14963	intron	ENSMUSG00000085196	ProperStrand	4	1	-3.6552
chr11	6528074	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr17	71637939	71638009	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	1	-11.4530
chr6	6938959	6938980	protein_coding	Acn9	intron	ENSMUSG00000042505	ProperStrand	10	chr15	100167949	100171146	protein_coding	Mettl7a3	intron	ENSMUSG00000058057	ProperStrand	2	1	-20.0413
chr5	146261265	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	135320985	135321064	protein_coding	Myom3	intron	ENSMUSG00000037139	NonProperStrand	91	1	-7.0483
chr14	21544247	21544268	protein_coding	Ndst2	exon	ENSMUSG00000039308	NonProperStrand	56	chr13	17714140	17714231	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	ProperStrand	57	1	-12.2652
chr17	64697828	64697862	LINE	L1Md_F2	L1	chr17L1Md_F264697044	NonProperStrand	1	chr9	123461905	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	110335984	110336407	LTR	RLTR4_MM-int	ERV1	chr5RLTR4_MM-int110330544	NonProperStrand	9	chr5	110336495	110337137	LTR	RLTR4_Mm	ERV1	chr5RLTR4_Mm110336292	NonProperStrand	1	1	-inf
chr11	76350772	76350836	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	chr5	115710698	115710767	protein_coding	Rnf10	intron	ENSMUSG00000041740	ProperStrand	41	1	-10.0701
chr4	150872391	150872439	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr18	34943172	34943268	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-7.5270
chr17	4082128	4082246	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr3	6299855	6304890	LINE	L1Md_T	L1	chr3L1Md_T6299058	ProperStrand	15	13	-inf
chr17	39846952	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	27050815	27050905	LTR	ORR1A2-int	MaLR	chr8ORR1A2-int27049436	ProperStrand	1	1	-inf
chr17	39847682	39847724	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	46390075	46390093	protein_coding	Pvrl3	utr3	ENSMUSG00000022656	NonProperStrand	4	1	-3.7035
chr11	68904437	68904472	protein_coding	Vamp2	utr3	ENSMUSG00000020894	ProperStrand	37	chr5	138296794	138297372	protein_coding	Pilrb1	intron	ENSMUSG00000066684	NonProperStrand	29	1	-14.4733
chr2	41344451	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	chr7	99119294	99119429	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-6.7343
chr6	135519636	135519654	LTR	MLT1C	MaLR	chr6MLT1C135519377	NonProperStrand	1	chr8	123105179	123105224	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	218	1	-inf
chr11	109011821	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	89753079	89753176	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-4.5682
chr12	24852392	24852425	LTR	MMERVK10C-int	ERVK	chr12MMERVK10C-int24851217	ProperStrand	8	chr12	24856419	24856499	SINE	B4A	B4	chr12B4A24856255	NonProperStrand	4	1	-inf
chr17	39846759	39846823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	35732856	35732925	protein_coding	Hmx1	intron	ENSMUSG00000067438	ProperStrand	2	1	-5.3533
chr11	102305131	102305193	protein_coding	Fam171a2	intron	ENSMUSG00000034685	ProperStrand	37	chr17	34115514	34115566	pseudogene	H2-K2	.	ENSMUSG00000067203	ProperStrand	36	1	-14.0342
chr16	78367618	78367709	protein_coding	Btg3	intron	ENSMUSG00000022863	ProperStrand	13	chr18	9877455	9877555	protein_coding	Colec12	utr3	ENSMUSG00000036103	ProperStrand	25	2	-inf
chr2	5379255	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr18	80419943	80420007	protein_coding	Txnl4a	utr3	ENSMUSG00000057130	NonProperStrand	74	1	-4.1492
chr17	39846453	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	25244126	25244226	protein_coding-noncoding	Telo2	utr3	ENSMUSG00000024170	NonProperStrand	6	2	-5.1926
chr2	28556575	28556665	protein_coding-noncoding	Ak8	utr5	ENSMUSG00000026807	ProperStrand	1	chr2	28556849	28556949	protein_coding	Ak8	intron	ENSMUSG00000026807	ProperStrand	38	1	-inf
chr10	82878167	82878246	LTR	IAPLTR2_Mm	ERVK	chr10IAPLTR2_Mm82877994	NonProperStrand	1	chr10	28076719	28076787	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	1	-inf
chr14	19278161	19278200	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr2	73716649	73716683	protein_coding	Atf2	intron	ENSMUSG00000027104	ProperStrand	38	1	-12.4697
chr11	16353846	16353936	LINE	L1Md_F	L1	chr11L1Md_F16352861	ProperStrand	1	chr9	19657803	19657903	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-inf
chr6	108243248	108243295	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	chr10	58556029	58556112	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-6.5448
chrX	73764653	73764675	LINE	L1_Mus3	L1	chrXL1_Mus373764479	NonProperStrand	2	chr19	4803137	4803258	protein_coding	Rbm14	exon	ENSMUSG00000006456	ProperStrand	194	1	-17.0804
chr17	70963679	70963782	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr7	137470235	138867420	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	2	-4.5012
chr3	16547100	16547156	LINE	Lx	L1	chr3Lx16546648	ProperStrand	1	chr3	16540405	16540453	LINE	Lx3_Mus	L1	chr3Lx3_Mus16537921	ProperStrand	1	1	-inf
chr10	117780705	117781426	LTR	LTRIS_Mus	ERV1	chr10LTRIS_Mus117780962	ProperStrand	2	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-19.1639
chr12	111193749	111193839	LINE	L4	RTE	chr12L4111193709	ProperStrand	2	chr12	111193893	111193993	LTR	RMER16	ERVK	chr12RMER16111193910	NonProperStrand	2	2	-inf
chr2	5869764	5869796	DNA	Tigger5	MER2_type	chr2Tigger55869715	ProperStrand	3	chr9	110281293	110281320	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-13.9200
chr4	74403624	74403724	LINE	L1Md_F2	L1	chr4L1Md_F274403641	NonProperStrand	2	chr4	74403521	74403611	LTR	IAPEY2_LTR	ERVK	chr4IAPEY2_LTR74403284	NonProperStrand	3	1	-20.8297
chr6	128414578	128414612	lincRNA	Gm10069	intron	ENSMUSG00000059659	NonProperStrand	13	chr2	181354550	181354594	protein_coding	Prpf6	intron	ENSMUSG00000002455	ProperStrand	86	1	-14.4205
chr9	121680721	121680740	protein_coding	Zfp651	utr3	ENSMUSG00000013419	NonProperStrand	7	chr9	109938032	109938126	protein_coding	Mtap4	intron	ENSMUSG00000032479	ProperStrand	91	1	-15.6280
chr17	39847102	39847118	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	46374271	46374297	protein_coding	Dnahc7b	intron	ENSMUSG00000041144	ProperStrand	8	1	-3.3803
chr9	122998565	122998633	protein_coding	Zdhhc3	intron	ENSMUSG00000025786	NonProperStrand	28	chr2	5379262	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.0377
chr17	39845957	39845984	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr16	10966646	10993058	protein_coding	Litaf	intron	ENSMUSG00000022500	NonProperStrand	3	2	-13.5912
chr13	94434404	94434490	protein_coding	Bhmt2	intron	ENSMUSG00000042118	NonProperStrand	7	chr2	113529449	113563285	protein_coding	Fmn1	intron	ENSMUSG00000044042	ProperStrand	31	1	-17.8024
chr6	89548748	89548856	LTR	RLTR19-int	ERVK	chr6RLTR19-int89548718	ProperStrand	1	chr5	145134370	145134415	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	1	-inf
chr16	35981698	35981767	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr3	144499602	144499661	protein_coding	Clca4	intron	ENSMUSG00000037033	ProperStrand	58	1	-10.1861
chr10	42767225	42767265	protein_coding	Sobp	intron	ENSMUSG00000038248	NonProperStrand	27	chr12	109632445	109632505	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-9.3993
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr14	65549355	65549460	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	1	-10.8682
chr8	107293840	107324668	LINE	Lx6	L1	chr8Lx6107293558	ProperStrand	2	chr17	39846472	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39848181	39848271	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	61152488	61152588	protein_coding	Slc47a2	intron	ENSMUSG00000069855	ProperStrand	19	1	-3.4660
chr12	78874568	78874643	LINE	L1Md_T	L1	chr12L1Md_T78869932	NonProperStrand	9	chr18	34609936	34610455	protein_coding	Fam13b	intron	ENSMUSG00000036501	ProperStrand	59	1	-15.9619
chr8	84699694	84699710	LINE	Lx2	L1	chr8Lx284698625	NonProperStrand	21	chr2	26912847	26912913	LTR	ORR1D2	MaLR	chr2ORR1D226912626	NonProperStrand	16	1	-16.8198
chr13	37838515	37838580	DNA	MER2	MER2_type	chr13MER237838302	NonProperStrand	3	chr13	37842386	37842456	SINE	RSINE1	B4	chr13RSINE137842339	ProperStrand	1	1	-inf
chr14	27652890	27652961	protein_coding	Dnahc12	intron	ENSMUSG00000021879	ProperStrand	39	chr9	22365309	22365330	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	1	-11.2781
chr14	33967595	33967685	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	chr14	120185736	120185836	protein_coding	Hs6st3	intron	ENSMUSG00000053465	ProperStrand	34	1	-11.9519
chr17	39846968	39847027	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	173132322	173132340	SINE	ID_B1	B4	chr2ID_B1173132292	NonProperStrand	3	1	-4.3017
chr11	11713456	11713497	LTR	MTE2b	MaLR	chr11MTE2b11713383	NonProperStrand	1	chr11	11715298	11715368	protein_coding	Ddc	exon	ENSMUSG00000020182	NonProperStrand	4	1	-inf
chr2	119816911	119816980	protein_coding	Mapkbp1	intron	ENSMUSG00000033902	ProperStrand	29	chr17	30093373	30093432	protein_coding	Mdga1	intron	ENSMUSG00000043557	NonProperStrand	98	1	-12.5064
chr14	118558512	118558604	protein_coding	Gpr180	intron	ENSMUSG00000022131	NonProperStrand	17	chr9	83848331	83848375	protein_coding	Bckdhb	intron	ENSMUSG00000032263	ProperStrand	63	1	-14.4857
chr1	87364852	87364892	LTR	RLTR6_Mm	ERV1	chr1RLTR6_Mm87364722	ProperStrand	1	chr1	140509446	140509463	protein_coding	Nek7	intron	ENSMUSG00000026393	NonProperStrand	5	1	-inf
chr17	91214919	91215019	protein_coding	Nrxn1	intron	ENSMUSG00000024109	ProperStrand	19	chr7	103550520	103550610	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-14.3582
chr4	145449435	145449534	LTR	MYSERV6-int	ERVK	chr4MYSERV6-int145448847	ProperStrand	2	chr4	147522614	147522704	protein_coding	Fbxo6	intron	ENSMUSG00000055401	NonProperStrand	3	2	-inf
chr13	7084663	7084763	LINE	Lx	L1	chr13Lx7084564	ProperStrand	1	chr5	123027162	123027252	protein_coding	Ift81	intron	ENSMUSG00000029469	ProperStrand	8	1	-inf
chr5	33530513	33530596	LTR	RLTR10	ERVK	chr5RLTR1033530513	NonProperStrand	1	chr16	13833930	13833976	protein_coding	Pdxdc1	utr3	ENSMUSG00000022680	ProperStrand	20	1	-inf
chr3	96120236	96120260	LTR	MMERVK10C-int	ERVK	chr3MMERVK10C-int96118741	NonProperStrand	4	chr15	44401201	44401256	protein_coding	Pkhd1l1	intron	ENSMUSG00000038725	NonProperStrand	20	1	-20.7310
chr17	39848615	39848721	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	129592105	129592276	lincRNA	E330017L17Rik	intron	ENSMUSG00000086369	NonProperStrand	7	1	-5.7189
chr4	145104830	145104930	protein_coding	Gm13242	utr5	ENSMUSG00000058186	ProperStrand	3	chr4	145104470	145104560	protein_coding	Gm13225	intron	ENSMUSG00000078503	ProperStrand	1	1	-inf
chr11	97168665	97168705	LTR	RLTR23	ERV1	chr11RLTR2397168630	NonProperStrand	1	chr17	39847271	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr9	93615898	93615988	LINE	L1_Mus1	L1	chr9L1_Mus193615616	ProperStrand	1	chr9	93616242	93616342	SINE	B3	B2	chr9B393616121	ProperStrand	1	1	-inf
chr10	39441587	39441677	lincRNA	E130307A14Rik	exon	ENSMUSG00000087177	NonProperStrand	100	chr13	109833277	109833328	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	1	-6.9633
chr1	156034112	156034184	LTR	RLTR10C	ERVK	chr1RLTR10C156034117	ProperStrand	1	chr9	21003762	21003795	protein_coding	Pde4a	intron	ENSMUSG00000032177	ProperStrand	9	1	-inf
chr17	39845983	39846050	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	86091701	86091779	protein_coding	Med13	intron	ENSMUSG00000034297	ProperStrand	27	1	-3.3782
chr3	88170870	88170929	protein_coding	Paqr6	exon	ENSMUSG00000041423	NonProperStrand	1	chr3	88175766	88175846	protein_coding	Bglap-rs1	intron	ENSMUSG00000074489	ProperStrand	1	1	-inf
chrX	121324059	121324077	Simple_repeat	(GAAA)n	Simple_repeat	chrX(GAAA)n121323992	NonProperStrand	1	chr9	71947603	71947640	protein_coding	Tcf12	intron	ENSMUSG00000032228	ProperStrand	21	1	-inf
chr7	28821258	28821476	LINE	Lx3C	L1	chr7Lx3C28821181	ProperStrand	34	chr7	28820617	28821235	LTR	RMER19C	ERVK	chr7RMER19C28820055	ProperStrand	29	4	-20.3795
chr5	137524299	137524399	DNA	MER44B	MER2_type	chr5MER44B137524225	NonProperStrand	7	chr5	137524062	137524232	SINE	B3A	B2	chr5B3A137524027	ProperStrand	11	2	-inf
chr11	19959967	19959985	LTR	ORR1C2	MaLR	chr11ORR1C219959892	NonProperStrand	1	chr12	78350926	78351067	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-inf
chr14	34735674	34735723	DNA	Charlie4a	MER1_type	chr14Charlie4a34735437	NonProperStrand	1	chr9	123461916	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	102618829	102618877	LTR	MER34A	ERV1	chr12MER34A102618789	NonProperStrand	2	chr12	102618975	102619051	LTR	ORR1D2	MaLR	chr12ORR1D2102618879	NonProperStrand	2	2	-inf
chr11	70688757	70688781	protein_coding	Rabep1	intron	ENSMUSG00000020817	NonProperStrand	24	chr4	59848606	59848681	protein_coding	Snx30	intron	ENSMUSG00000028385	ProperStrand	123	1	-12.4367
chr2	155896239	155896290	protein_coding-noncoding	Spag4	utr5	ENSMUSG00000038180	NonProperStrand	4	chr14	52266232	52266293	protein_coding	Gm5622	intron	ENSMUSG00000079244	NonProperStrand	57	1	-18.0173
chr17	39847610	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	119079062	119079098	protein_coding	Slc22a14	intron	ENSMUSG00000070280	ProperStrand	5	1	-3.2379
chr11	71133799	71133889	LTR	LTRIS_Mm	ERV1	chr11LTRIS_Mm71133572	NonProperStrand	1	chr2	131918600	131918700	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-inf
chr17	64281706	64281777	protein_coding	Fer	intron	ENSMUSG00000000127	NonProperStrand	23	chr11	6419533	6419573	protein_coding	Myo1g	intron	ENSMUSG00000020437	NonProperStrand	91	1	-13.1290
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr10	105238419	105238447	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-7.2338
chr7	127343137	127343258	protein_coding	Crym	intron	ENSMUSG00000030905	ProperStrand	1	chr9	118674951	118674983	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr5	117113338	117113357	Low_complexity	GA-rich	Low_complexity	chr5GA-rich117113337	NonProperStrand	1	chr18	36801938	36802009	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	1	-inf
chr4	89154385	89154475	LTR	MTD	MaLR	chr4MTD89154344	ProperStrand	3	chr4	89154535	89154635	SINE	MIRb	MIR	chr4MIRb89154548	ProperStrand	2	2	-inf
chr1	118952909	118953009	SINE	B4A	B4	chr1B4A118952737	NonProperStrand	2	chr1	118953051	118953141	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n118953026	NonProperStrand	2	2	-inf
chr4	44024848	44024887	protein_coding	Clta	intron	ENSMUSG00000028478	ProperStrand	49	chrX	13282037	13282141	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-10.4873
chr8	91217004	91217041	LTR	ORR1E	MaLR	chr8ORR1E91216778	NonProperStrand	1	chr5	72298537	72298584	protein_coding	Gabrb1	intron	ENSMUSG00000029212	ProperStrand	56	1	-inf
chr17	94352027	94352127	LINE	L1_Mus1	L1	chr17L1_Mus194351158	NonProperStrand	1	chr17	91133992	91134082	protein_coding	Nrxn1	intron	ENSMUSG00000024109	NonProperStrand	30	1	-inf
chr19	16013571	16013671	protein_coding	Psat1	intron	ENSMUSG00000024640	ProperStrand	10	chr2	44861514	44861604	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	42	1	-16.4266
chr16	43963490	43963513	protein_coding	2610015P09Rik	exon	ENSMUSG00000022701	ProperStrand	26	chr19	55839789	55839868	protein_coding	Tcf7l2	intron	ENSMUSG00000024985	ProperStrand	67	1	-13.4944
chr17	39847212	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	166897342	166897397	LTR	MLT1K	MaLR	chr2MLT1K166897312	NonProperStrand	2	2	-inf
chr2	103766815	103768809	Other	RMER1C	Other	chr2RMER1C103768358	ProperStrand	2	chr9	123461881	123461912	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847659	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	30069008	30069059	LTR	RLTR19B	ERVK	chr2RLTR19B30068562	ProperStrand	5	2	-5.9065
chr1	71643130	71645638	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	chr17	74389096	74389137	protein_coding	Srd5a2	intron	ENSMUSG00000038541	NonProperStrand	12	1	-13.7095
chr16	23087441	23087461	LTR	MTEa	MaLR	chr16MTEa23087377	ProperStrand	1	chr17	39846462	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	8709423	8709451	protein_coding	Pum2	intron	ENSMUSG00000020594	ProperStrand	67	chr1	74003526	74079202	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	1	-11.2988
chr6	3201478	3201522	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	43868693	43868747	protein_coding	Cyp39a1	intron	ENSMUSG00000023963	ProperStrand	9	1	-6.5801
chr2	31732948	31733048	LINE	L1M5	L1	chr2L1M531732971	ProperStrand	1	chr2	31732862	31732952	SINE	B1_Mm	Alu	chr2B1_Mm31732817	ProperStrand	3	1	-inf
chr1	13440984	13441002	LTR	MTC	MaLR	chr1MTC13440669	ProperStrand	1	chr9	123462036	123462056	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	129874315	129874343	LINE	L1Md_T	L1	chrXL1Md_T129873876	NonProperStrand	2	chr17	25424531	25424637	SINE	B3A	B2	chr17B3A25424477	ProperStrand	1	1	-inf
chr3	98319627	98319732	LINE	L1Md_F	L1	chr3L1Md_F98319123	ProperStrand	4	chr17	39846718	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-6.6967
chr19	26232456	26232556	LINE	L1MA6	L1	chr19L1MA626232231	NonProperStrand	1	chr2	13989245	13989334	LTR	RLTR11A2	ERVK	chr2RLTR11A213989110	ProperStrand	1	1	-inf
chr17	39846432	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	58234087	58234142	LTR	ORR1D1	MaLR	chr9ORR1D158233799	ProperStrand	1	1	-inf
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr19	8888537	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	2	-13.2056
chr12	59040334	59040424	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr3	108554455	108554555	protein_coding	Aknad1	utr5	ENSMUSG00000049565	NonProperStrand	220	1	-7.4354
chr9	55191569	55191704	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	chr8	83938582	83938602	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-9.6048
chr11	3973313	3973368	protein_coding	Sec14l3	intron	ENSMUSG00000054986	NonProperStrand	1	chr10	85878912	85879004	protein_coding	Syn3	intron	ENSMUSG00000059602	NonProperStrand	48	1	-inf
chr6	115774610	115774632	antisense	BC060267	.	ENSMUSG00000030321	NonProperStrand	8	chr8	95848712	95852806	protein_coding	Ces1g	intron	ENSMUSG00000057074	ProperStrand	20	1	-18.4144
chr16	14312152	14312201	protein_coding	0610037P05Rik	intron	ENSMUSG00000022677	ProperStrand	7	chr17	50182423	50182491	protein_coding	Rftn1	intron	ENSMUSG00000039316	ProperStrand	24	1	-18.3337
chr11	106501597	106501631	Low_complexity	G-rich	Low_complexity	chr11G-rich106501563	ProperStrand	1	chr4	86660194	86660220	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	161	1	-inf
chr3	78049403	78049421	LINE	L1Md_T	L1	chr3L1Md_T78048399	ProperStrand	1	chr11	115868229	115868301	protein_coding	Itgb4	intron	ENSMUSG00000020758	ProperStrand	37	1	-inf
chr5	45702693	45702726	LINE	L1VL2	L1	chr5L1VL245701772	NonProperStrand	5	chr9	64173398	64174843	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-14.1102
chr13	9834304	9834436	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr6	85438854	85438872	protein_coding	Fbxo41	intron	ENSMUSG00000047013	ProperStrand	11	1	-12.5713
chr17	39846039	39846071	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr13	23420724	23420746	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	1	-3.7612
chr18	58127667	58127686	LINE	L1_Mur2	L1	chr18L1_Mur258126357	NonProperStrand	1	chr3	86140630	86140688	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-inf
chr9	123461811	123461871	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	84671431	84671483	protein_coding	Fbxw7	intron	ENSMUSG00000028086	ProperStrand	8	1	-4.8360
chr7	136952636	136952715	LTR	MT2A	ERVL	chr7MT2A136952294	NonProperStrand	3	chr9	123461875	123461924	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr15	61987549	61987572	lincRNA	Pvt1	intron	ENSMUSG00000072566	NonProperStrand	20	chr5	135381279	135381305	protein_coding	Wbscr28	intron	ENSMUSG00000040576	ProperStrand	9	1	-18.3602
chr2	74514742	74514787	protein_coding	Hoxd12	utr3	ENSMUSG00000001823	NonProperStrand	2	chr13	97190563	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-12.5278
chrX	144320943	144321043	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int144320874	ProperStrand	2	chr11	69667831	69667921	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	2	-inf
chr11	48803172	48803204	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr2	158358355	158358474	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-7.8187
chr14	64685247	64685337	LTR	MT2C_Mm	ERVL	chr14MT2C_Mm64684923	ProperStrand	3	chr14	64685343	64685443	SINE	B4	B4	chr14B464685369	ProperStrand	2	2	-inf
chr9	110281297	110281320	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr11	97678318	97678354	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	1	-6.0942
chr2	60347973	60348052	protein_coding	Pla2r1	intron	ENSMUSG00000054580	ProperStrand	69	chr13	35870845	35870917	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-8.2186
chr8	83719591	83719894	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int83719268	ProperStrand	3	chr8	83719890	83720599	LTR	RLTR10C	ERVK	chr8RLTR10C83720204	ProperStrand	8	1	-20.8155
chr8	41133051	41133133	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n41133063	NonProperStrand	1	chr9	123462063	123462095	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	87238358	87238422	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr17	39846353	39847134	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	26	-6.4071
chr7	80745375	80745415	LTR	RMER5	ERV1	chr7RMER580745316	NonProperStrand	1	chr13	46902358	46902467	protein_coding	Kif13a	intron	ENSMUSG00000021375	ProperStrand	101	1	-inf
chr17	39847216	39847250	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	125110315	125113523	protein_coding	Gapdh	intron	ENSMUSG00000057666	NonProperStrand	6	1	-3.9545
chr2	22744824	22744880	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	43534113	43534179	protein_coding-noncoding	Pwwp2a	utr5	ENSMUSG00000044950	ProperStrand	2	1	-14.2535
chr9	19657765	19657833	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr12	80868236	80868307	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-8.5733
chr6	51463112	51463186	LTR	ORR1A4	MaLR	chr6ORR1A451462944	NonProperStrand	3	chr6	51462646	51462730	SINE	B3A	B2	chr6B3A51462601	NonProperStrand	2	1	-20.2824
chr17	39847080	39847138	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	28566210	28566278	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int28565655	NonProperStrand	1	1	-inf
chr6	148927417	148927478	LINE	Lx9	L1	chr6Lx9148926064	ProperStrand	2	chr3	90308297	90308377	protein_coding	2500003M10Rik	intron	ENSMUSG00000001017	NonProperStrand	12	1	-inf
chr17	39847636	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	91465062	91465162	protein_coding	Xpc	intron	ENSMUSG00000030094	ProperStrand	9	2	-3.9821
chr17	39847804	39847884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	152181561	152181636	processed_transcript	Gm14164	.	ENSMUSG00000068062	ProperStrand	3	2	-8.1061
chr10	29150312	29150402	LTR	ETnERV-int	ERVK	chr10ETnERV-int29148540	NonProperStrand	4	chr10	29180962	29196293	protein_coding	Rspo3	intron	ENSMUSG00000019880	NonProperStrand	17	4	-inf
chr18	59305453	59305543	DNA	URR1A	MER1_type	chr18URR1A59305341	ProperStrand	1	chr18	59305094	59305194	LTR	MLT1D	MaLR	chr18MLT1D59305119	ProperStrand	1	1	-inf
chr5	38194137	38194196	LINE	L1_Mur3	L1	chr5L1_Mur338194041	NonProperStrand	2	chr10	61735640	61736612	protein_coding	Hk1	intron	ENSMUSG00000037012	NonProperStrand	16	2	-inf
chr5	100414778	100414866	SINE	ID_B1	B4	chr5ID_B1100414758	NonProperStrand	1	chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	112713197	112713287	LTR	ORR1A2	MaLR	chr13ORR1A2112713014	NonProperStrand	3	chr13	112709449	112709549	SINE	B1F1	Alu	chr13B1F1112709460	NonProperStrand	2	2	-inf
chr2	59639355	59639417	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	chr1	64914221	64914261	protein_coding	Plekhm3	intron	ENSMUSG00000051344	ProperStrand	29	1	-11.7624
chr11	27041348	27041448	LINE	L1VL2	L1	chr11L1VL227040670	ProperStrand	1	chr11	27041591	27041681	LINE	L1VL2	L1	chr11L1VL227041593	ProperStrand	1	1	-inf
chr12	105572166	105572222	LTR	MERVL_2A-int	ERVL	chr12MERVL_2A-int105572115	ProperStrand	1	chr16	91651776	91654684	protein_coding	Son	intron	ENSMUSG00000022961	ProperStrand	70	1	-inf
chr17	45969195	45969295	SINE	ID_B1	B4	chr17ID_B145969193	ProperStrand	1	chr17	45969428	45969518	SINE	RSINE1	B4	chr17RSINE145969415	ProperStrand	1	1	-inf
chrX	61727037	61727137	LINE	Lx6	L1	chrXLx661726861	NonProperStrand	1	chr2	137529263	137529353	lincRNA	Gm14064	intron	ENSMUSG00000085640	ProperStrand	6	1	-inf
chr14	100108649	100108676	SINE	MIRb	MIR	chr14MIRb100108588	ProperStrand	1	chr9	123462128	123462160	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	100606915	100607004	protein_coding	Shq1	intron	ENSMUSG00000035378	ProperStrand	53	chr6	71882555	71882588	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-10.7508
chr8	114527212	114527281	protein_coding	Kars	exon	ENSMUSG00000031948	NonProperStrand	70	chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.1992
chr13	111780408	111780459	Simple_repeat	(GGGA)n	Simple_repeat	chr13(GGGA)n111780381	NonProperStrand	1	chr9	123461959	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr19	20224179	20224279	LINE	Lx	L1	chr19Lx20224123	NonProperStrand	1	chr19	20223976	20224066	SINE	B2_Mm1a	B2	chr19B2_Mm1a20223925	NonProperStrand	1	1	-inf
chr1	72659167	72659183	protein_coding-noncoding	Smarcal1	utr5	ENSMUSG00000039354	NonProperStrand	1	chr17	36977749	36977885	protein_coding	Trim26	intron	ENSMUSG00000024457	NonProperStrand	28	1	-inf
chr9	123461903	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr18	45592122	45592247	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	2	-3.5608
chr3	27096061	27096143	protein_coding	Nceh1	intron	ENSMUSG00000027698	NonProperStrand	62	chr4	137646714	137646785	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-7.8711
chr6	125186420	125186450	protein_coding-noncoding	Cd27	utr3	ENSMUSG00000030336	ProperStrand	80	chr6	88318555	88318575	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	1	-8.3328
chr16	50292690	50292785	protein_coding	Bbx	intron	ENSMUSG00000022641	ProperStrand	76	chr1	164258003	164258052	protein_coding	Dnm3	intron	ENSMUSG00000040265	NonProperStrand	77	1	-11.0453
chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr2	5379317	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.7867
chr5	146835693	146835932	LINE	L1_Mur2	L1	chr5L1_Mur2146835560	NonProperStrand	4	chr5	88739344	88739444	LINE	L1_Mus1	L1	chr5L1_Mus188733920	NonProperStrand	2	2	-inf
chr17	39846419	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	28962580	28962666	protein_coding	Fbl	intron	ENSMUSG00000046865	ProperStrand	1	1	-inf
chr3	135429451	135429541	LTR	RMER17D	ERVK	chr3RMER17D135428878	NonProperStrand	2	chr13	8767282	8767382	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	2	-inf
chr4	4776345	4776362	LINE	L1M5	L1	chr4L1M54776310	NonProperStrand	1	chr9	114512226	114512259	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-inf
chr13	59756730	59756791	protein_coding	Golm1	intron	ENSMUSG00000021556	ProperStrand	21	chr1	189683914	189684978	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	103	1	-13.0644
chr15	82937797	82937880	protein_coding-noncoding	Serhl	utr5	ENSMUSG00000058586	NonProperStrand	14	chr9	123461848	123461921	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr13	45636297	45636387	protein_coding	Gmpr	intron	ENSMUSG00000000253	NonProperStrand	12	chr9	123462021	123462077	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr17	39846394	39846462	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	75453636	75453670	SINE	B1_Mus2	Alu	chr12B1_Mus275453614	ProperStrand	1	1	-inf
chr17	39847645	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	102095497	102095596	SINE	B2_Mm2	B2	chr15B2_Mm2102095501	ProperStrand	2	1	-5.4040
chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.7308
chr1	167943814	167943833	lincRNA	Gm17444	intron	ENSMUSG00000091458	ProperStrand	1	chr19	16290641	16290736	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	1	-inf
chr1	182132189	182132240	SINE	B3	B2	chr1B3182132112	ProperStrand	1	chr14	7908622	7908660	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-inf
chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	23	1	-13.7445
chr5	114851974	114852031	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr4	101432117	101432192	protein_coding	Lepr	intron	ENSMUSG00000057722	ProperStrand	109	1	-8.1092
chr3	103044819	103046862	LTR	MT2A	ERVL	chr3MT2A103046726	NonProperStrand	3	chr3	103044790	103046823	SINE	B1_Mm	Alu	chr3B1_Mm103044799	ProperStrand	1	1	-inf
chr4	116178616	116178716	SINE	B2_Mm1t	B2	chr4B2_Mm1t116178615	NonProperStrand	1	chr4	116178509	116178599	SINE	B2_Mm2	B2	chr4B2_Mm2116178468	NonProperStrand	1	1	-inf
chr5	146260994	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	105954022	105954073	protein_coding	Chi3l3	intron	ENSMUSG00000040809	ProperStrand	17	1	-7.5728
chr2	5379257	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr14	52081900	52084173	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-3.2695
chr19	52926178	52926196	LTR	RodERV21-int	ERV1	chr19RodERV21-int52925329	ProperStrand	2	chr3	135548062	135548196	protein_coding-noncoding	Slc39a8	utr5	ENSMUSG00000053897	ProperStrand	1	1	-inf
chr7	143291788	143291821	LTR	MTE2b	MaLR	chr7MTE2b143291622	NonProperStrand	2	chr7	143245439	143245542	SINE	RSINE1	B4	chr7RSINE1143245439	NonProperStrand	1	1	-inf
chrX	46769896	46769986	antisense	Gm14697	.	ENSMUSG00000086948	NonProperStrand	3	chr2	165333925	165334025	protein_coding	Slc2a10	intron	ENSMUSG00000027661	NonProperStrand	1	1	-inf
chr15	25671671	25671738	protein_coding	Myo10	intron	ENSMUSG00000022272	ProperStrand	120	chr1	34232546	34232628	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-5.4244
chr3	7542864	7542894	protein_coding	Fam164a	intron	ENSMUSG00000043542	ProperStrand	19	chr6	113616277	113616323	protein_coding	Irak2	intron	ENSMUSG00000060477	ProperStrand	23	1	-16.2874
chr7	126795505	126795627	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr16	11360151	11360219	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	1	-8.4644
chr2	128703589	128703725	protein_coding	Fbln7	intron	ENSMUSG00000027386	ProperStrand	7	chr9	110281288	110281304	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	3	-20.1898
chr12	31655097	31655114	LTR	MTA_Mm	MaLR	chr12MTA_Mm31654814	NonProperStrand	2	chr17	39846410	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr13	65258924	65259014	DNA	RMER30	MER1_type	chr13RMER3065258935	ProperStrand	4	chr13	65258825	65258925	LTR	MLT1E2	MaLR	chr13MLT1E265258788	NonProperStrand	4	4	-inf
chr4	155266041	155266116	protein_coding	Acap3	utr5	ENSMUSG00000029033	NonProperStrand	24	chr4	155265801	155265886	protein_coding	Pusl1	utr5	ENSMUSG00000051557	ProperStrand	1	1	-inf
chr3	151026976	151027076	LINE	L1M2	L1	chr3L1M2151026891	ProperStrand	1	chr3	151026793	151026883	LTR	RMER19A	ERVK	chr3RMER19A151026139	ProperStrand	1	1	-inf
chr13	44743722	44743786	Simple_repeat	(GGAA)n	Simple_repeat	chr13(GGAA)n44743683	ProperStrand	5	chr19	32840893	32840976	protein_coding	Pten	intron	ENSMUSG00000013663	ProperStrand	3	1	-inf
chr1	120078219	120078309	LINE	Lx3B	L1	chr1Lx3B120078173	ProperStrand	3	chr1	120077781	120077881	LTR	RLTR13A2	ERVK	chr1RLTR13A2120077222	NonProperStrand	2	2	-inf
chr3	88409139	88409240	SINE	B1_Mur1	Alu	chr3B1_Mur188409102	ProperStrand	2	chr3	88409252	88409342	SINE	B2_Mm2	B2	chr3B2_Mm288409259	NonProperStrand	2	2	-inf
chr2	167135867	167135912	protein_coding	B4galt5	intron	ENSMUSG00000017929	ProperStrand	25	chr12	78350926	78351012	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-7.6413
chrX	87238359	87238391	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr14	19278153	19278195	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-9.0084
chr4	48524522	48524592	LTR	MTD	MaLR	chr4MTD48524513	ProperStrand	2	chr4	48524185	48524257	SINE	ID_B1	B4	chr4ID_B148524190	NonProperStrand	2	2	-inf
chr13	44869928	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr5	113724224	113724324	protein_coding	Sgsm1	intron	ENSMUSG00000042216	ProperStrand	5	1	-9.5722
chr5	146261021	146261065	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	109244257	109244700	processed_transcript	Gm12811	.	ENSMUSG00000087641	ProperStrand	12	1	-8.2893
chr3	142220784	142220878	LINE	L1_Mus2	L1	chr3L1_Mus2142220678	ProperStrand	1	chr19	4803674	4803737	protein_coding	Rbm14	exon	ENSMUSG00000006456	ProperStrand	194	1	-inf
chr6	85340441	85340534	SINE	PB1D9	Alu	chr6PB1D985340430	ProperStrand	1	mmu-miR-295-3p	0	23	miRNA	mmu-miR-295-3p	.	mmu-miR-295-3p	ProperStrand	4	1	-inf
chr11	81015136	81015205	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	161	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.8956
chr1	136364891	136364953	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr9	118672985	118673047	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-7.8470
chr4	115007157	115007281	LINE	L1Md_F	L1	chr4L1Md_F115006532	ProperStrand	5	chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-14.4719
chr17	39847216	39847359	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	115380921	115380942	protein_coding	Cntnap4	intron	ENSMUSG00000031772	ProperStrand	104	7	-3.1533
chrX	37082922	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	11	chr17	32810135	32810220	protein_coding	Cyp4f40	intron	ENSMUSG00000090700	ProperStrand	1	1	-inf
chr5	124363319	124363390	protein_coding	Denr	intron	ENSMUSG00000023106	NonProperStrand	29	chr2	31679937	31679978	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	1	-11.7910
chr17	39846452	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	53334558	53334600	Simple_repeat	(TTCC)n	Simple_repeat	chr18(TTCC)n53334481	ProperStrand	1	1	-inf
chr12	7870782	7870882	LINE	L1MEg	L1	chr12L1MEg7870707	NonProperStrand	1	chr12	7871048	7871138	LTR	MTEb	MaLR	chr12MTEb7870968	NonProperStrand	1	1	-inf
chr19	13453903	13453919	LINE	Lx5	L1	chr19Lx513453406	NonProperStrand	1	chr2	112309892	112309918	protein_coding	2900064A13Rik	utr3	ENSMUSG00000055943	ProperStrand	17	1	-inf
chr1	63282936	63283036	LINE	Lx7	L1	chr1Lx763282949	NonProperStrand	1	chr1	63282739	63282829	SINE	B3	B2	chr1B363282702	NonProperStrand	1	1	-inf
chr5	134593107	134593153	protein_coding	Gatsl2	intron	ENSMUSG00000015944	ProperStrand	38	chr12	78350929	78351039	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-6.8008
chr3	153493025	153493115	LINE	L1_Mus3	L1	chr3L1_Mus3153492795	NonProperStrand	1	chr3	153492926	153493027	LINE	L1_Mus3	L1	chr3L1_Mus3153492795	ProperStrand	3	1	-inf
chr4	129706620	129706710	antisense	Gm12963	.	ENSMUSG00000085517	NonProperStrand	1	chr4	123609497	123609597	protein_coding	Rragc	intron	ENSMUSG00000028646	ProperStrand	1	1	-inf
chr7	16234946	16235046	LINE	L1_Mus3	L1	chr7L1_Mus316234732	NonProperStrand	1	chr7	105797073	105797163	protein_coding	2210018M11Rik	intron	ENSMUSG00000035401	NonProperStrand	5	1	-inf
chr1	91970281	91970355	protein_coding	Iqca	intron	ENSMUSG00000026301	ProperStrand	175	chr3	14565748	14565764	protein_coding	Lrrcc1	exon	ENSMUSG00000027550	ProperStrand	7	1	-14.3034
chr18	37413477	37413493	LINE	L1Md_F2	L1	chr18L1Md_F237413012	NonProperStrand	1	chr2	5379252	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	46770317	46770338	lincRNA	Gm16736	intron	ENSMUSG00000086673	ProperStrand	89	chr8	9207886	9207902	protein_coding	Fam155a	exon	ENSMUSG00000079157	NonProperStrand	20	1	-13.4599
chr11	4808278	4816146	protein_coding	Thoc5	intron	ENSMUSG00000034274	NonProperStrand	16	chr19	16725646	16725671	protein_coding	Vps13a	intron	ENSMUSG00000046230	ProperStrand	15	1	-17.5553
chr17	39847527	39847928	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	45777278	45783433	protein_coding	Pafah1b2	intron	ENSMUSG00000003131	ProperStrand	11	2	-3.4077
chrX	101084237	101085324	LINE	L1_Mus1	L1	chrXL1_Mus1101084943	ProperStrand	2	chrX	101084130	101084230	LINE	L1_Rod	L1	chrXL1_Rod101084081	NonProperStrand	2	2	-inf
chr14	93041293	93041383	LTR	RMER15	ERVL	chr14RMER1593041050	ProperStrand	3	chr14	93041401	93041502	SINE	B2_Mm1t	B2	chr14B2_Mm1t93041430	ProperStrand	3	3	-inf
chr17	23818944	23818979	protein_coding	Cldn6	utr3	ENSMUSG00000023906	ProperStrand	74	chr18	69686701	69686746	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	1	-9.8438
chr16	37388739	37388839	LINE	L1Md_F2	L1	chr16L1Md_F237388552	ProperStrand	1	chr16	37388845	37388935	LTR	MLT1B	MaLR	chr16MLT1B37388867	ProperStrand	1	1	-inf
chr11	9131622	9131662	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	chr19	6910927	6910996	protein_coding	Rps6ka4	intron	ENSMUSG00000024952	NonProperStrand	6	1	-16.4413
chr17	39844018	39844054	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chrX	6106965	6107011	protein_coding	Shroom4	intron	ENSMUSG00000068270	ProperStrand	12	2	-11.6305
chrX	114279284	114279384	LINE	L1_Mus2	L1	chrXL1_Mus2114279062	NonProperStrand	1	chr13	13906404	13906494	protein_coding	Gng4	intron	ENSMUSG00000021303	NonProperStrand	2	1	-inf
chr6	115646129	115646183	SINE	B1_Mur1	Alu	chr6B1_Mur1115646083	NonProperStrand	1	chr14	122190059	122190149	protein_coding	Dock9	intron	ENSMUSG00000025558	NonProperStrand	173	1	-inf
chr5	57800179	57800269	LINE	L1Md_F2	L1	chr5L1Md_F257799379	ProperStrand	1	chr5	57800357	57800457	LTR	IAPLTR3	ERVK	chr5IAPLTR357800314	ProperStrand	1	1	-inf
chr4	5038785	5038885	LINE	L1Md_F2	L1	chr4L1Md_F25038073	NonProperStrand	1	chr4	5039182	5039272	LINE	Lx4B	L1	chr4Lx4B5039056	NonProperStrand	1	1	-inf
chr15	75786730	75786830	LTR	RMER16-int	ERVK	chr15RMER16-int75786059	NonProperStrand	5	chr15	75786846	75786936	LTR	RMER16	ERVK	chr15RMER1675786818	NonProperStrand	5	4	-inf
chr11	87426782	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chrX	106202637	106202685	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	1	-11.5787
chr4	79333663	79333763	LINE	Lx8	L1	chr4Lx879333685	ProperStrand	1	chr4	79333952	79334042	LINE	Lx8	L1	chr4Lx879333932	NonProperStrand	1	1	-inf
chr17	39847026	39847127	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	56436033	56436076	Simple_repeat	(GA)n	Simple_repeat	chr9(GA)n56436038	ProperStrand	1	1	-inf
chr17	39843372	39843412	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr1	189126291	189126309	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-3.4296
chr6	49236496	49236581	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr19	46084126	46084169	lincRNA	4930505N22Rik	intron	ENSMUSG00000090325	ProperStrand	37	1	-10.3034
chr12	81027972	81028041	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n81027986	ProperStrand	1	chr18	21132628	21132662	protein_coding	Rnf125	intron	ENSMUSG00000033107	NonProperStrand	13	1	-inf
chr5	98154478	98154568	LINE	L1_Mus3	L1	chr5L1_Mus398154361	NonProperStrand	2	chr5	98154698	98154798	LINE	Lx3C	L1	chr5Lx3C98154571	NonProperStrand	2	2	-inf
chr5	7319398	7319488	LINE	Lx8	L1	chr5Lx87319318	ProperStrand	1	chr5	7319196	7319296	LTR	ORR1A4	MaLR	chr5ORR1A47318974	NonProperStrand	1	1	-inf
chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	chr14	7887304	7887427	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-6.1893
chr17	39843413	39843447	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr12	84925512	84925613	protein_coding	Zfyve1	intron	ENSMUSG00000042628	ProperStrand	15	1	-5.1667
chr6	29215821	29215858	SINE	PB1D7	Alu	chr6PB1D729215789	ProperStrand	7	chr6	29214123	29214243	SINE	RSINE1	B4	chr6RSINE129214111	ProperStrand	2	2	-inf
chr1	168393339	168393437	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n168393250	NonProperStrand	1	chr8	110688053	110688094	Simple_repeat	(TC)n	Simple_repeat	chr8(TC)n110688031	ProperStrand	4	1	-inf
chr17	39846415	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	116820037	116820062	pseudogene	Best4-ps	.	ENSMUSG00000033872	NonProperStrand	2	1	-5.3533
chr11	51601285	51601335	protein_coding	Sar1b	intron	ENSMUSG00000020386	NonProperStrand	109	chr2	5379274	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.4291
chr3	58568698	58568788	lincRNA	4930593A02Rik	intron	ENSMUSG00000087019	NonProperStrand	12	chr3	57540518	57540618	protein_coding	Rnf13	intron	ENSMUSG00000036503	NonProperStrand	32	1	-16.5870
chr3	52818150	52818166	protein_coding	Cog6	intron	ENSMUSG00000027742	ProperStrand	4	chr16	10669726	10669840	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	1	-15.1902
chr5	146260994	146261065	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr16	19883804	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	4	-8.1833
chr17	39845991	39846101	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr9	123450207	123450239	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	1	-3.3782
chr17	39847275	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	22018359	22018437	LTR	RLTR9A	ERVK	chr9RLTR9A22018275	ProperStrand	1	1	-inf
chr17	34982030	34982664	protein_coding-noncoding	Skiv2l	utr3	ENSMUSG00000040356	NonProperStrand	4	chr17	34981932	34982022	protein_coding	Skiv2l	intron	ENSMUSG00000040356	NonProperStrand	14	4	-inf
chr17	39845951	39846002	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	40775085	40775183	protein_coding	Larp1b	intron	ENSMUSG00000037814	ProperStrand	8	1	-5.7717
chr14	74707008	74707108	LTR	RLTR44-int	ERVK	chr14RLTR44-int74707001	ProperStrand	1	chr14	74706770	74706860	LTR	RLTR44A	ERVK	chr14RLTR44A74706603	ProperStrand	1	1	-inf
chr10	61266244	61266319	LINE	Lx8	L1	chr10Lx861266258	ProperStrand	2	chr10	61250943	61251008	LTR	RMER21B	ERV1	chr10RMER21B61250740	NonProperStrand	1	1	-inf
chr13	3845411	3845511	LINE	L1Md_F2	L1	chr13L1Md_F23844931	ProperStrand	1	chr13	3845674	3845766	LINE	L1Md_F3	L1	chr13L1Md_F33845492	NonProperStrand	1	1	-inf
chr19	53143319	53143419	LINE	HAL1-3A_ME	L1	chr19HAL1-3A_ME53143284	ProperStrand	5	chr19	53143208	53143298	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n53143185	ProperStrand	2	2	-inf
chr9	110281285	110281334	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr1	93171511	93171623	protein_coding	Ube2f	intron	ENSMUSG00000034343	NonProperStrand	2	1	-15.0102
chr17	39847736	39847920	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	55219023	55229074	protein_coding	Sparc	intron	ENSMUSG00000018593	NonProperStrand	8	2	-4.3369
chr7	126795248	126795375	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr10	58464214	58464236	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	2	-11.0803
chr12	112125828	112125929	protein_coding	Cinp	intron	ENSMUSG00000021276	NonProperStrand	26	chr17	79465854	79465870	protein_coding	Qpct	intron	ENSMUSG00000024084	ProperStrand	2	1	-20.4235
chr15	84199844	84200357	LINE	L1Md_F2	L1	chr15L1Md_F284199847	NonProperStrand	7	chr15	84198651	84199852	SINE	B1_Mm	Alu	chr15B1_Mm84199767	NonProperStrand	1	1	-inf
chr17	4082105	4082195	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr15	35042848	35042948	protein_coding	Stk3	intron	ENSMUSG00000022329	ProperStrand	45	2	-17.8954
chr3	144467374	144467408	protein_coding	Clca2	intron	ENSMUSG00000028262	ProperStrand	26	chr13	97190572	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.7743
chr6	38564769	38564861	LTR	MYSERV6-int	ERVK	chr6MYSERV6-int38564131	NonProperStrand	1	chr13	44869575	44869643	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr9	114525079	114562504	LTR	IAPEY2_LTR	ERVK	chr9IAPEY2_LTR114562303	NonProperStrand	37	chr9	114512264	114562340	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	21	-inf
chr7	139248815	139248915	protein_coding-noncoding	Cpxm2	utr3	ENSMUSG00000030862	NonProperStrand	1	chr7	139248695	139248785	protein_coding	Cpxm2	intron	ENSMUSG00000030862	NonProperStrand	17	1	-inf
chr1	136627423	136627498	protein_coding	Syt2	intron	ENSMUSG00000026452	ProperStrand	51	chr10	80698839	80698904	protein_coding	Zfr2	intron	ENSMUSG00000034949	NonProperStrand	34	1	-13.5005
chr4	41267256	41267279	LINE	Lx5	L1	chr4Lx541266766	NonProperStrand	2	chr18	35554511	35554636	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-15.8773
chr2	25344748	25344838	LTR	MTEa	MaLR	chr2MTEa25344631	ProperStrand	1	chr2	25344346	25344446	Other	RMER1A	Other	chr2RMER1A25343182	NonProperStrand	1	1	-inf
chr10	21480512	21480530	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	11	chr17	39847080	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	2	-4.9635
chr1	131573844	131573871	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	chr7	123387409	123387426	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	1	-6.7139
chr7	121651888	121651934	protein_coding-noncoding	Pde3b	utr5	ENSMUSG00000030671	NonProperStrand	1	chr7	121656913	121657021	protein_coding	Pde3b	intron	ENSMUSG00000030671	NonProperStrand	24	1	-inf
chr13	23988893	23988993	LTR	MTC	MaLR	chr13MTC23988875	ProperStrand	1	chr13	23988609	23988699	LTR	RMER20B	ERVK	chr13RMER20B23988255	NonProperStrand	1	1	-inf
chr2	80559537	80559627	LINE	L1M2	L1	chr2L1M280559411	NonProperStrand	3	chr17	70963683	70963783	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	2	-inf
chr1	29841919	29842009	LINE	Lx9	L1	chr1Lx929841820	NonProperStrand	1	chr11	71091226	71091326	polymorphic_pseudogene	Nlrp1c-ps	.	ENSMUSG00000092528	NonProperStrand	5	1	-inf
chr11	84894261	84894361	protein_coding	Usp32	intron	ENSMUSG00000000804	ProperStrand	59	chr16	30586769	30586859	protein_coding	Lsg1	intron	ENSMUSG00000022538	NonProperStrand	2	1	-20.5255
chr13	29780337	29780373	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr2	37514265	37514339	protein_coding	Strbp	intron	ENSMUSG00000026915	NonProperStrand	81	2	-11.7915
chr12	16938155	16938221	protein_coding	Rock2	intron	ENSMUSG00000020580	ProperStrand	46	chr10	11080847	11082255	protein_coding	Epm2a	intron	ENSMUSG00000055493	NonProperStrand	5	1	-17.7848
chr17	39843024	39843069	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr11	60854722	60854758	protein_coding	Kcnj12	intron	ENSMUSG00000042529	ProperStrand	20	1	-7.5738
chr12	8778273	8778343	protein_coding	Sdc1	utr5	ENSMUSG00000020592	ProperStrand	6	chr11	33156050	33156689	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-12.1927
chr8	69890651	69890725	LTR	IAP-d-int	ERVK	chr8IAP-d-int69889537	NonProperStrand	2	chr8	69893246	69893306	LTR	IAPLTR3-int	ERVK	chr8IAPLTR3-int69892619	NonProperStrand	11	1	-21.2279
chr1	139038119	139038191	LINE	Lx8	L1	chr1Lx8139037966	NonProperStrand	1	chr15	77288819	77288871	processed_transcript	4930571N24Rik	.	ENSMUSG00000086467	NonProperStrand	43	1	-inf
chr7	16313712	16313741	LINE	L1Md_F2	L1	chr7L1Md_F216313568	NonProperStrand	1	chr17	39847675	39847714	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	50711112	50711211	LINE	L1Md_F3	L1	chr4L1Md_F350710748	NonProperStrand	1	chr3	135493501	135493591	protein_coding	Slc39a8	intron	ENSMUSG00000053897	ProperStrand	45	1	-inf
chr10	127003428	127003444	protein_coding	Lrp1	intron	ENSMUSG00000040249	ProperStrand	36	chrX	52487588	52487698	protein_coding	Slxl1	intron	ENSMUSG00000067909	NonProperStrand	19	1	-15.3927
chr7	18897791	18897843	LINE	L1Md_T	L1	chr7L1Md_T18896491	ProperStrand	1	chr6	49153131	49153193	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	ProperStrand	101	1	-inf
chr17	39847026	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	48544906	48544923	protein_coding	Nfya	intron	ENSMUSG00000023994	NonProperStrand	1	1	-inf
chr6	122713551	122713616	protein_coding	Slc2a3	intron	ENSMUSG00000003153	NonProperStrand	31	chr19	10073022	10073119	protein_coding	Best1	intron	ENSMUSG00000037418	ProperStrand	12	1	-16.6507
chr17	39846350	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	25364193	25364521	LTR	RMER17C	ERVK	chr2RMER17C25364015	ProperStrand	3	1	-4.3017
chr11	8993515	8993615	LTR	RLTR42-int	ERVK	chr11RLTR42-int8993523	NonProperStrand	1	chr11	8993670	8993760	SINE	B1_Mus2	Alu	chr11B1_Mus28993626	NonProperStrand	1	1	-inf
chr1	59780725	59780825	SINE	B1_Mur4	Alu	chr1B1_Mur459780745	ProperStrand	2	chr1	59780615	59780705	SINE	B3	B2	chr1B359780537	ProperStrand	2	2	-inf
chr17	39847611	39847643	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	86694142	86694378	SINE	B3	B2	chr10B386694242	ProperStrand	2	1	-5.4040
chr14	36904293	36904383	LINE	L1_Mus1	L1	chr14L1_Mus136904074	NonProperStrand	1	chr14	36904492	36904592	LINE	L1_Mus1	L1	chr14L1_Mus136904074	ProperStrand	1	1	-inf
chr10	80054565	80054601	SINE	B1_Mus1	Alu	chr10B1_Mus180054559	NonProperStrand	2	chr17	70963669	70963772	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-13.6441
chr5	31062492	31062523	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr17	30857320	30857345	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	1	-8.8427
chr11	62604510	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr13	44869608	44869674	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.2770
chr7	110257542	110257630	LINE	L1Md_Gf	L1	chr7L1Md_Gf110253517	ProperStrand	1	chr17	39846932	39846975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	85924815	85924834	LINE	L1Md_F3	L1	chrXL1Md_F385924679	NonProperStrand	2	chr2	165812566	165812696	lincRNA	Gm11464	intron	ENSMUSG00000087351	NonProperStrand	32	1	-19.8685
chr10	81281923	81281966	LTR	RLTR19-int	ERVK	chr10RLTR19-int81281741	NonProperStrand	1	chr17	42834950	42835021	Low_complexity	GA-rich	Low_complexity	chr17GA-rich42834918	NonProperStrand	1	1	-inf
chr6	116099918	116099992	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	chr6	147056476	147056529	protein_coding	Klhdc5	exon	ENSMUSG00000040102	ProperStrand	12	1	-15.3461
chr6	89521445	89521555	protein_coding	Chchd6	intron	ENSMUSG00000030086	ProperStrand	188	chr12	42176003	42176021	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	1	-9.6023
chr10	51833819	51833909	protein_coding	Ros1	intron	ENSMUSG00000019893	ProperStrand	5	chr14	33967852	33967952	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-15.9801
chr11	57658624	57658724	LINE	L1MD3	L1	chr11L1MD357658608	NonProperStrand	1	chr11	57658477	57658567	SINE	ID_B1	B4	chr11ID_B157658464	NonProperStrand	2	1	-inf
chr17	39846452	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	10022078	10022120	protein_coding-noncoding	Cops5	utr3	ENSMUSG00000025917	ProperStrand	1	1	-inf
chr13	30627522	30627622	LINE	L1Md_F2	L1	chr13L1Md_F230627489	ProperStrand	1	chr13	30627285	30627375	LTR	BGLII_B	ERVK	chr13BGLII_B30627037	NonProperStrand	1	1	-inf
chr17	12299156	12299266	LINE	L1ME3A	L1	chr17L1ME3A12299125	ProperStrand	1	chr17	39847209	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39846660	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	17237773	17237852	SINE	B1_Mus1	Alu	chr17B1_Mus117237715	NonProperStrand	1	1	-inf
chr6	118450934	118451024	LINE	L1MC4	L1	chr6L1MC4118450861	ProperStrand	1	chr6	118451101	118451201	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n118451041	ProperStrand	2	1	-inf
chr7	120728368	120728446	LINE	Lx5	L1	chr7Lx5120728250	NonProperStrand	7	chr16	33047641	33047692	processed_transcript	Gm17106	.	ENSMUSG00000078489	NonProperStrand	26	2	-inf
chr4	149156624	149156736	antisense	Gm16188	.	ENSMUSG00000085368	NonProperStrand	13	chr4	149154170	149156608	lincRNA	Gm13073	exon	ENSMUSG00000084807	ProperStrand	6	5	-inf
chr1	162706568	162706595	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	chr4	149120027	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.5541
chr7	102035387	102035424	LTR	RMER20A	ERVK	chr7RMER20A102035270	NonProperStrand	4	chr9	57105614	57105661	protein_coding	1700017B05Rik	exon	ENSMUSG00000032300	NonProperStrand	7	1	-inf
chr6	57053263	57053363	LINE	L1Md_F3	L1	chr6L1Md_F357050383	ProperStrand	1	chrX	22825305	22825395	protein_coding	Klhl13	intron	ENSMUSG00000036782	NonProperStrand	3	1	-inf
chr2	130428267	130428357	protein_coding	Ubox5	utr5	ENSMUSG00000027300	NonProperStrand	18	chr2	173094195	173094295	protein_coding	Pmepa1	intron	ENSMUSG00000038400	NonProperStrand	4	1	-20.0512
chr11	30575304	30575439	LTR	RLTR25B	ERVK	chr11RLTR25B30575127	ProperStrand	1	chr17	39846979	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	100163975	100164036	LTR	ERVL-E-int	ERVL	chr15ERVL-E-int100163941	ProperStrand	1	chr17	39846580	39846657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39848646	39848704	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr6	13922424	13922497	lincRNA	1110019D14Rik	intron	ENSMUSG00000084931	ProperStrand	28	1	-3.0052
chr2	85042392	85042419	SINE	B4A	B4	chr2B4A85042158	ProperStrand	5	chr3	65386958	65387080	SINE	B3	B2	chr3B365386886	ProperStrand	2	1	-23.2669
chr9	37250298	37250398	LTR	MERVL-int	ERVL	chr9MERVL-int37249817	NonProperStrand	2	chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	1	-19.5916
chr9	104243613	104243654	LTR	RMER5	ERV1	chr9RMER5104243352	NonProperStrand	2	chr2	154666155	154666232	protein_coding	Raly	intron	ENSMUSG00000027593	ProperStrand	47	2	-inf
chr17	39846462	39846486	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	8873301	8873383	SINE	B1_Mm	Alu	chr19B1_Mm8873299	ProperStrand	1	1	-inf
chrX	38533716	38537138	LINE	L1Md_A	L1	chrXL1Md_A38536611	ProperStrand	3	chr17	39847414	39847433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr6	3201469	3201509	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	78933293	78933323	protein_coding	Akap11	intron	ENSMUSG00000022016	NonProperStrand	27	1	-4.3779
chr17	39847105	39847166	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	97796178	97796249	protein_coding	Tmem106c	intron	ENSMUSG00000052369	ProperStrand	1	1	-inf
chr1	181937796	181937848	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	chr14	52213280	52213342	protein_coding	Gm5622	intron	ENSMUSG00000079244	NonProperStrand	57	1	-8.1359
chr2	165829666	165829717	protein_coding	Ncoa3	intron	ENSMUSG00000027678	NonProperStrand	296	chr4	141501553	141501616	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	1	-7.8868
chr6	122735486	122735544	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr13	29820400	29820478	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	1	-4.9907
chr13	44794363	44794426	SINE	B1_Mur4	Alu	chr13B1_Mur444794357	NonProperStrand	1	chr16	22111457	22111552	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-inf
chr17	21537565	21537646	LTR	RLTR16	ERVK	chr17RLTR1621537487	NonProperStrand	1	chr17	21537007	21537036	SINE	B3	B2	chr17B321536997	NonProperStrand	1	1	-inf
chr13	23300121	23300198	LINE	L1_Mur2	L1	chr13L1_Mur223300101	ProperStrand	10	chr17	39846433	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	3	-5.6971
chr17	39847207	39847247	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	80127475	80127557	SINE	B3	B2	chr12B380127449	NonProperStrand	1	1	-inf
chr6	3201509	3201562	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	55628640	55631869	protein_coding	Ddx41	utr3	ENSMUSG00000021494	NonProperStrand	3	1	-9.0398
chr6	84181602	84181692	LTR	MLT1B	MaLR	chr6MLT1B84181573	NonProperStrand	1	chr6	84181724	84181824	SINE	PB1	Alu	chr6PB184181739	ProperStrand	1	1	-inf
chr10	40258543	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	103702929	103702946	protein_coding	Nsf	intron	ENSMUSG00000034187	NonProperStrand	2	1	-12.7698
chr17	84269372	84269481	SINE	B3	B2	chr17B384269341	ProperStrand	1	chr11	107459213	107459249	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	1	-inf
chr9	57642927	57643333	protein_coding-noncoding	Arid3b	utr3	ENSMUSG00000004661	ProperStrand	2	chr9	57640794	57642911	protein_coding	Arid3b	intron	ENSMUSG00000004661	ProperStrand	21	2	-inf
chr6	125162320	125162506	SINE	B3	B2	chr6B3125162279	ProperStrand	16	chr17	26067897	26067913	protein_coding	Pigq	exon	ENSMUSG00000025728	ProperStrand	31	1	-16.0668
chr16	20369087	20369148	protein_coding-noncoding	Abcc5	utr3	ENSMUSG00000022822	ProperStrand	8	chr12	78350926	78351017	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-9.9985
chr12	28710523	28710636	LINE	Lx2	L1	chr12Lx228710498	ProperStrand	8	chr7	81384613	81384634	SINE	RSINE1	B4	chr7RSINE181384503	NonProperStrand	2	1	-inf
chr7	5070566	5070676	SINE	PB1	Alu	chr7PB15070577	NonProperStrand	1	chr3	129608840	129608883	protein_coding	Casp6	exon	ENSMUSG00000027997	ProperStrand	68	1	-inf
chr17	29491542	29491736	SINE	B1F	Alu	chr17B1F29491661	ProperStrand	11	chr17	29491387	29491565	SINE	B1_Mur2	Alu	chr17B1_Mur229491511	ProperStrand	3	2	-inf
chr8	13417130	13417221	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	13	chr9	115035691	115035791	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	1	-12.8168
chr4	32203940	32204040	LTR	RLTR20D	ERVK	chr4RLTR20D32203826	NonProperStrand	1	chr4	32204241	32204331	LTR	RLTR20D	ERVK	chr4RLTR20D32204242	NonProperStrand	1	1	-inf
chr13	101923973	101923990	LINE	L1ME3A	L1	chr13L1ME3A101923915	NonProperStrand	1	chr5	137332802	137332878	protein_coding	Emid2	intron	ENSMUSG00000004415	ProperStrand	82	1	-inf
chr14	69783638	69783738	antisense	1700092C10Rik	.	ENSMUSG00000092499	NonProperStrand	3	chr9	110009375	110009465	protein_coding	Dhx30	intron	ENSMUSG00000032480	NonProperStrand	23	1	-19.7972
chr13	59798357	59798457	LINE	L1_Mus4	L1	chr13L1_Mus459798113	ProperStrand	2	chr13	59798488	59798578	SINE	B2_Mm2	B2	chr13B2_Mm259798474	ProperStrand	2	2	-inf
chr17	34824779	34824869	protein_coding	Tnxb	intron	ENSMUSG00000033327	NonProperStrand	91	chr17	34824648	34824748	snRNA	ENSMUSG00000065816_U6	.	ENSMUSG00000065816	ProperStrand	1	1	-inf
chr9	9428514	9428604	LINE	Lx2	L1	chr9Lx29427372	ProperStrand	2	chr9	9428764	9428864	LINE	Lx2	L1	chr9Lx29428529	ProperStrand	2	2	-inf
chr17	39847697	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	105220149	105220202	LTR	MTA_Mm	MaLR	chr4MTA_Mm105219798	ProperStrand	2	1	-5.4040
chr6	124811340	124811522	protein_coding	Gpr162	exon	ENSMUSG00000038390	ProperStrand	81	chr13	44869952	44870016	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.9244
chr13	119392913	119392984	LTR	MLT1A1	MaLR	chr13MLT1A1119392893	NonProperStrand	1	chr13	119396931	119396952	LTR	MLT1C	MaLR	chr13MLT1C119396592	NonProperStrand	2	1	-inf
chr9	123462082	123462127	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	3077131	3077157	pseudogene	Pisd-ps2	.	ENSMUSG00000023795	ProperStrand	15	1	-3.5950
chr14	57834906	57835006	LINE	Lx7	L1	chr14Lx757834882	ProperStrand	1	chr14	57835006	57835096	LTR	ORR1D1	MaLR	chr14ORR1D157834993	ProperStrand	1	1	-inf
chr2	32963099	32963192	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	chr5	110105210	110105229	protein_coding	5430403G16Rik	exon	ENSMUSG00000072763	NonProperStrand	10	1	-12.5647
chr11	51656890	51656980	protein_coding-noncoding	Phf15	utr3	ENSMUSG00000020387	NonProperStrand	16	chr18	24813122	24813223	protein_coding	Mocos	intron	ENSMUSG00000039616	ProperStrand	48	1	-15.1615
chr14	20034819	20034940	LTR	MTA_Mm	MaLR	chr14MTA_Mm20034553	ProperStrand	1	chr11	113445645	113445673	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-inf
chr17	39846579	39846650	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	30378039	30378230	LTR	MTEa	MaLR	chr2MTEa30378186	NonProperStrand	3	1	-4.3017
chr11	68790122	68790222	DNA	Charlie4a	MER1_type	chr11Charlie4a68790130	NonProperStrand	1	chr11	68787445	68787535	protein_coding	Slc25a35	utr3	ENSMUSG00000018740	ProperStrand	10	1	-inf
chr5	40552887	40552977	LINE	L1MB8	L1	chr5L1MB840552893	NonProperStrand	1	chr5	40552688	40552788	LINE	Lx9	L1	chr5Lx940552601	NonProperStrand	1	1	-inf
chr6	113884923	113884969	protein_coding	Atp2b2	intron	ENSMUSG00000030302	ProperStrand	88	chr16	29634035	29634071	protein_coding	Opa1	intron	ENSMUSG00000038084	ProperStrand	37	1	-12.2288
chr17	39846883	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	84166857	84166875	Simple_repeat	(CATA)n	Simple_repeat	chr6(CATA)n84166701	ProperStrand	1	1	-inf
chr17	39847216	39847254	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	51466690	51466979	SINE	B4	B4	chr6B451466718	NonProperStrand	6	1	-3.9545
chr17	39846414	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	30578026	30578126	SINE	B3	B2	chr10B330577943	ProperStrand	1	1	-inf
chr3	19224495	19224595	LINE	L1M2	L1	chr3L1M219224468	ProperStrand	1	chr3	19224385	19224475	LINE	L1MA4	L1	chr3L1MA419224105	NonProperStrand	1	1	-inf
mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	12	chr2	32687623	32687923	protein_coding	Stxbp1	intron	ENSMUSG00000026797	ProperStrand	48	1	-15.7499
chr6	3201430	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	128084143	128085599	lincRNA	Gm17336	exon	ENSMUSG00000091431	ProperStrand	114	3	-5.1044
chr6	3201509	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	110383838	110384099	protein_coding	Kif9	intron	ENSMUSG00000032489	ProperStrand	10	1	-6.3611
chr17	39847439	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	111070678	111070698	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	6	-3.3212
chr9	123461798	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	5338259	5619232	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	112	-22.0025
chr1	93622482	93622502	LINE	Lx6	L1	chr1Lx693622346	ProperStrand	5	chr17	84972535	84972651	protein_coding	Plekhh2	intron	ENSMUSG00000040852	ProperStrand	89	1	-16.4063
chr7	3646556	3646601	protein_coding-noncoding	Tsen34	utr5	ENSMUSG00000035585	ProperStrand	1	chr7	3647615	3647651	protein_coding	Tsen34	intron	ENSMUSG00000035585	ProperStrand	35	1	-inf
chr19	4103456	4104866	protein_coding	Pitpnm1	exon	ENSMUSG00000024851	ProperStrand	3	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr2	5710044	5710134	LINE	Lx7	L1	chr2Lx75709929	NonProperStrand	3	chr2	5698740	5698840	LTR	MMERVK10C-int	ERVK	chr2MMERVK10C-int5695916	ProperStrand	4	3	-inf
chr3	63707482	63707582	LTR	MT2B	ERVL	chr3MT2B63707306	NonProperStrand	1	chr3	63706966	63707056	LTR	ORR1A4	MaLR	chr3ORR1A463706789	ProperStrand	1	1	-inf
chr17	39845557	39845625	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr1	164374004	164374069	protein_coding	Dnm3	intron	ENSMUSG00000040265	NonProperStrand	77	2	-3.3630
chr17	39846602	39846633	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	108297291	108298789	protein_coding	1700102P08Rik	intron	ENSMUSG00000032611	ProperStrand	2	1	-5.3533
chr6	88476159	88476259	LINE	L1Md_F3	L1	chr6L1Md_F388475621	ProperStrand	2	chr17	8379752	8379842	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-20.7239
chr17	39842998	39843069	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr7	141160571	141402847	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	2	-5.5891
chr2	22744878	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	38571218	38571323	protein_coding	Aff3	intron	ENSMUSG00000037138	ProperStrand	166	1	-4.8185
chr1	179784238	179784298	LTR	ORR1C1-int	MaLR	chr1ORR1C1-int179783000	NonProperStrand	1	chr10	62816450	62818950	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	228	1	-inf
chr9	123461884	123461916	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	12929284	12929400	protein_coding	C1ql3	intron	ENSMUSG00000049630	NonProperStrand	3	1	-7.0114
chr18	67293778	67293901	protein_coding	Gnal	intron	ENSMUSG00000024524	ProperStrand	146	chr6	80625888	80625910	protein_coding	Lrrtm4	intron	ENSMUSG00000052581	NonProperStrand	16	1	-12.9249
chr10	34488811	34488901	LINE	L1Md_F	L1	chr10L1Md_F34485113	ProperStrand	1	chr7	47188365	47188465	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	1	-inf
chr2	155673084	155692173	protein_coding	Uqcc	intron	ENSMUSG00000005882	ProperStrand	21	chr9	110551104	110551183	protein_coding	Nbeal2	intron	ENSMUSG00000056724	NonProperStrand	24	1	-16.0093
chr13	34126828	34126875	protein_coding	Ripk1	utr3	ENSMUSG00000021408	NonProperStrand	15	chr14	24472701	24472814	protein_coding	Kcnma1	intron	ENSMUSG00000063142	ProperStrand	191	1	-12.5197
chr10	7611335	7611425	LTR	MMERVK10C-int	ERVK	chr10MMERVK10C-int7610805	ProperStrand	4	chr7	142031798	142031898	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	2	-inf
chr3	41575914	41575966	LTR	LTR80B	ERVL	chr3LTR80B41575928	NonProperStrand	9	chr8	124266499	124266590	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	1	-13.2692
chr15	76394978	76395114	LTR	RLTR4_MM-int	ERV1	chr15RLTR4_MM-int76394441	NonProperStrand	4	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-12.2242
chr2	5379271	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr13	77881732	77881789	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-4.3094
chr3	128327051	128327141	LINE	L1Md_T	L1	chr3L1Md_T128325069	NonProperStrand	2	chr3	128343637	128343737	LTR	MTC	MaLR	chr3MTC128343557	NonProperStrand	1	1	-inf
chr9	123461811	123461867	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr10	79739200	79739244	protein_coding	Dazap1	intron	ENSMUSG00000069565	NonProperStrand	17	1	-3.3592
chr14	8166423	8166719	LINE	L1Md_F3	L1	chr14L1Md_F38166371	NonProperStrand	1	chr16	92085648	92085665	protein_coding	Slc5a3	utr3	ENSMUSG00000089774	NonProperStrand	1	1	-inf
chr4	38059502	38059592	LINE	L1_Mus1	L1	chr4L1_Mus138059517	NonProperStrand	1	chr4	38059656	38059756	LINE	L1_Mus4	L1	chr4L1_Mus438059629	NonProperStrand	1	1	-inf
chr1	64079219	64079236	protein_coding	Klf7	utr3	ENSMUSG00000025959	ProperStrand	15	chr4	133878149	133878232	protein_coding	Trim63	intron	ENSMUSG00000028834	NonProperStrand	16	1	-17.5483
chr8	104434542	104434622	LINE	L1_Mus3	L1	chr8L1_Mus3104434556	ProperStrand	1	chr17	39846851	39846921	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	36926852	36926868	LTR	ORR1A3-int	MaLR	chr14ORR1A3-int36925660	NonProperStrand	1	chr6	3201469	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr17	39845513	39845633	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	1	-4.2357
chr3	100981170	100981260	LINE	Lx8	L1	chr3Lx8100979588	ProperStrand	1	chr3	100981374	100981474	LTR	RMER6D	ERVK	chr3RMER6D100981392	NonProperStrand	1	1	-inf
chr9	110281290	110281319	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr8	60907440	60907526	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-5.2134
chr1	63253835	63253873	lincRNA	Gm11607	intron	ENSMUSG00000086730	ProperStrand	24	chr19	5796874	5796981	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-6.2327
chr2	34586418	34586536	protein_coding	Gapvd1	intron	ENSMUSG00000026867	NonProperStrand	127	chr14	13263582	13263598	protein_coding	Cadps	intron	ENSMUSG00000054423	NonProperStrand	12	1	-13.8035
chr9	123461801	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	44869570	44921548	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	152	-inf
chr15	36598300	36599018	DNA	URR1B	MER1_type	chr15URR1B36598649	ProperStrand	3	chr17	39847640	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr7	27369823	27369923	Simple_repeat	(GAAA)n	Simple_repeat	chr7(GAAA)n27369782	NonProperStrand	1	chr7	27369971	27370061	Simple_repeat	(GAGAA)n	Simple_repeat	chr7(GAGAA)n27369965	NonProperStrand	1	1	-inf
chr9	40804006	40804071	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr17	80721929	80721984	protein_coding	Arhgef33	intron	ENSMUSG00000054901	NonProperStrand	28	1	-8.9709
chr5	121989289	121989397	protein_coding	Mapkapk5	intron	ENSMUSG00000029454	ProperStrand	29	chr11	117157144	117157192	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	151	1	-11.6397
chr11	29385766	29385797	protein_coding	Ccdc88a	intron	ENSMUSG00000032740	ProperStrand	17	chr16	34549626	34549647	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-11.6979
chr9	64198674	64198742	LINE	L1MB7	L1	chr9L1MB764198624	ProperStrand	1	chr15	8228632	8228710	LTR	MMVL30-int	ERV1	chr15MMVL30-int8227965	NonProperStrand	1	1	-inf
chr6	3201469	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	102829373	102829447	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	5	-6.9868
chr1	36440980	36441070	LINE	Lx8	L1	chr1Lx836440893	ProperStrand	4	chr1	172183429	172183529	protein_coding	Sh2d1b2	utr3	ENSMUSG00000073494	ProperStrand	22	1	-21.0097
chr15	51842507	51842598	DNA	URR1A	MER1_type	chr15URR1A51842336	NonProperStrand	5	chr15	51799287	51842495	protein_coding	Rad21	intron	ENSMUSG00000022314	ProperStrand	45	5	-inf
chr17	39847445	39847766	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	3410873	3410892	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	4	-4.2948
chr10	11655199	11655299	LINE	L1_Mur2	L1	chr10L1_Mur211654990	NonProperStrand	1	chr10	11655617	11655707	LINE	Lx5	L1	chr10Lx511655410	NonProperStrand	1	1	-inf
chr4	117462658	117462748	SINE	B1_Mus1	Alu	chr4B1_Mus1117462683	NonProperStrand	2	chr4	117462485	117462585	SINE	B3	B2	chr4B3117462493	NonProperStrand	2	2	-inf
chr17	39845962	39846041	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr4	136271432	136271501	protein_coding	Ephb2	intron	ENSMUSG00000028664	NonProperStrand	64	4	-7.3334
chr13	30710361	30710451	lincRNA	4930519D14Rik	intron	ENSMUSG00000086263	NonProperStrand	3	chr12	3637529	3637629	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	2	-20.4645
chr4	132309942	132310019	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr5	123365991	123366058	protein_coding	Kdm2b	intron	ENSMUSG00000029475	NonProperStrand	97	1	-8.7587
chr8	71291880	71291970	SINE	ID_B1	B4	chr8ID_B171291856	ProperStrand	2	chr8	71291973	71292073	Simple_repeat	(TAGA)n	Simple_repeat	chr8(TAGA)n71292001	ProperStrand	1	1	-inf
chrX	151859438	151859528	LINE	Lx7	L1	chrXLx7151859385	ProperStrand	2	chrX	151859602	151859702	LINE	Lx7	L1	chrXLx7151859533	ProperStrand	8	2	-inf
chr14	70386656	70386748	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	65	chr9	118674951	118674991	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.8135
chr11	109011651	109011702	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	62797367	62797451	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-4.9003
chr7	128360099	128360189	LTR	LTR89	ERVL?	chr7LTR89128360082	NonProperStrand	1	chr7	128360267	128360367	LTR	MLT1J2	MaLR	chr7MLT1J2128360286	ProperStrand	1	1	-inf
chr5	38677939	38677998	protein_coding	Otop1	intron	ENSMUSG00000051596	NonProperStrand	55	chr5	118080951	118081035	protein_coding	Ksr2	intron	ENSMUSG00000061578	NonProperStrand	228	1	-9.5216
chr4	24628600	24628616	protein_coding	Klhl32	intron	ENSMUSG00000040387	ProperStrand	26	chr6	120716110	120716152	protein_coding	Cecr2	intron	ENSMUSG00000071226	ProperStrand	59	1	-13.7536
chr9	14941660	14941750	LINE	L1MB4	L1	chr9L1MB414941603	ProperStrand	1	chr9	14941826	14941926	LINE	L1MB4	L1	chr9L1MB414941812	ProperStrand	1	1	-inf
chr19	5422942	5423019	protein_coding	Drap1	exon	ENSMUSG00000024914	ProperStrand	13	chr13	97190563	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-13.1520
chr17	39846759	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	48448221	48448291	protein_coding	Treml2	intron	ENSMUSG00000071068	NonProperStrand	4	1	-3.6552
chr13	51680067	51680170	Simple_repeat	(CATA)n	Simple_repeat	chr13(CATA)n51680042	ProperStrand	1	chr11	68903251	68903281	protein_coding	Vamp2	exon	ENSMUSG00000020894	ProperStrand	37	1	-inf
chr16	32623068	32623131	protein_coding	Tfrc	intron	ENSMUSG00000022797	ProperStrand	40	chr9	100811655	100811722	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	1	-12.1884
chr9	32337346	32337436	protein_coding	Fli1	intron	ENSMUSG00000016087	NonProperStrand	57	chr9	32191160	32191260	protein_coding	Kcnj1	intron	ENSMUSG00000041248	NonProperStrand	1	1	-inf
chr7	18201152	18201242	LINE	L1Md_F2	L1	chr7L1Md_F218200596	ProperStrand	1	chr7	18201343	18201443	LTR	ETnERV3-int	ERVK	chr7ETnERV3-int18201325	NonProperStrand	1	1	-inf
chr1	162706026	162706060	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	chr6	140483393	140483449	protein_coding	Plekha5	intron	ENSMUSG00000030231	ProperStrand	213	1	-7.4156
chr14	69796581	69796681	DNA	MER2B	MER2_type	chr14MER2B69796496	NonProperStrand	1	chr14	69796729	69796819	DNA	MER2B	MER2_type	chr14MER2B69796725	NonProperStrand	2	1	-inf
chr10	93584039	93584083	protein_coding	Fgd6	intron	ENSMUSG00000020021	NonProperStrand	12	chr11	79240166	79240248	protein_coding	Nf1	intron	ENSMUSG00000020716	NonProperStrand	33	1	-16.5510
chr9	46177891	46177981	LINE	Lx8	L1	chr9Lx846177721	NonProperStrand	9	chr9	46178440	46178540	LINE	Lx8	L1	chr9Lx846178255	NonProperStrand	6	6	-inf
chr2	39004813	39005115	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.9086
chr4	91349654	91349757	LINE	Lx5	L1	chr4Lx591349680	NonProperStrand	1	chr9	123461814	123461848	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847598	39847642	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	77984888	77984993	protein_coding-noncoding	Nek8	utr3	ENSMUSG00000017405	NonProperStrand	4	1	-3.7035
chrX	38539012	38539112	LINE	L1Md_A	L1	chrXL1Md_A38536611	ProperStrand	3	chrX	38540074	38540995	LINE	Lx7	L1	chrXLx738540119	NonProperStrand	1	1	-inf
mmu-miR-290a-5p	0	22	miRNA	mmu-miR-290a-5p	.	mmu-miR-290a-5p	ProperStrand	1	chr15	84212500	84212540	protein_coding	1810041L15Rik	utr3	ENSMUSG00000062760	NonProperStrand	118	1	-inf
chr8	77470114	77470158	LINE	L1_Mus3	L1	chr8L1_Mus377469675	NonProperStrand	3	chr9	123462045	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr5	146261277	146261299	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr10	75927114	75927246	protein_coding	Ybey	intron	ENSMUSG00000033126	ProperStrand	25	1	-9.6416
chr12	104437161	104437253	protein_coding	Prima1	intron	ENSMUSG00000041669	NonProperStrand	8	chr1	9721888	9721905	protein_coding	Vcpip1	intron	ENSMUSG00000045210	ProperStrand	8	1	-19.9835
chr12	33357554	33357654	LINE	Lx5	L1	chr12Lx533356509	NonProperStrand	1	chr2	121782505	121782595	protein_coding	Ctdspl2	intron	ENSMUSG00000033411	NonProperStrand	29	1	-inf
chr10	53615321	53615423	LINE	L1Md_A	L1	chr10L1Md_A53613443	NonProperStrand	2	chr17	39847690	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr1	143949850	143949868	LINE	L1M2	L1	chr1L1M2143949352	ProperStrand	1	chr17	39847179	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	111546583	111546641	LINE	L1MA9	L1	chr8L1MA9111546368	ProperStrand	1	chr8	111599191	111599219	lincRNA	D030068K23Rik	exon	ENSMUSG00000085859	ProperStrand	53	1	-inf
chr13	109909118	109909238	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr15	93346683	93346704	protein_coding	Prickle1	intron	ENSMUSG00000036158	NonProperStrand	23	1	-9.9144
chr11	78273493	78273522	SINE	B2_Mm1t	B2	chr11B2_Mm1t78273343	NonProperStrand	1	chr11	78284785	78284818	protein_coding	Slc46a1	intron	ENSMUSG00000020829	ProperStrand	12	1	-inf
chr11	8550616	8550685	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr5	140048847	140048906	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	1	-4.5908
chr2	26913047	26913183	SINE	B4	B4	chr2B426912949	ProperStrand	20	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-11.3642
chr5	93123117	93137851	protein_coding	Shroom3	intron	ENSMUSG00000029381	ProperStrand	168	chr5	93095063	93102456	protein_coding	Ccdc158	intron	ENSMUSG00000050050	NonProperStrand	47	2	-16.4857
chr6	43336250	43336345	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	chr11	87456268	87456309	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-9.4047
chr1	174129354	174129454	protein_coding-noncoding	Pea15a	utr3	ENSMUSG00000013698	NonProperStrand	1	chr1	174128998	174129088	protein_coding	Pea15a	intron	ENSMUSG00000013698	NonProperStrand	1	1	-inf
chr14	31087719	31087834	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr3	138550294	138550324	protein_coding	Tspan5	intron	ENSMUSG00000028152	ProperStrand	84	1	-9.0677
chr13	46704652	46704668	protein_coding	Cap2	intron	ENSMUSG00000021373	NonProperStrand	63	chr5	143021834	143021930	protein_coding	Radil	intron	ENSMUSG00000029576	ProperStrand	24	1	-13.7829
chr15	102123486	102123582	SINE	B3A	B2	chr15B3A102123481	ProperStrand	1	chr9	123461997	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	30067999	30068099	SINE	RSINE1	B4	chr7RSINE130068016	NonProperStrand	1	chr7	30068111	30068201	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n30068103	NonProperStrand	1	1	-inf
chr1	43987301	43987347	LINE	Lx2	L1	chr1Lx243983369	ProperStrand	2	chr9	40804749	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-14.8938
chr17	39848021	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	46442250	46442294	protein_coding	Dppa1	intron	ENSMUSG00000064010	NonProperStrand	1	1	-inf
chr17	35849058	35850347	SINE	B1F	Alu	chr17B1F35850276	NonProperStrand	1	chr9	123461965	123462017	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	56011940	56011960	DNA	Ricksha_c	MuDR	chr3Ricksha_c56011929	NonProperStrand	1	chr2	32177119	32177222	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	1	-inf
chr11	109011661	109011707	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr6	86415521	86415559	protein_coding	C87436	intron	ENSMUSG00000046679	ProperStrand	7	1	-10.4933
chr11	109011732	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	134018224	134018722	LINE	L1MC	L1	chr4L1MC134018209	NonProperStrand	5	2	-18.1475
chr17	84764099	84764170	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	chr8	106819035	106819127	protein_coding	Cmtm1	intron	ENSMUSG00000031876	NonProperStrand	30	1	-11.4053
chr17	39846659	39846761	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	9655610	9655640	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int9655544	NonProperStrand	1	1	-inf
chr2	85414327	85414417	LINE	Lx4A	L1	chr2Lx4A85414069	ProperStrand	1	chr2	85414715	85414815	LINE	Lx6	L1	chr2Lx685414441	ProperStrand	1	1	-inf
chr5	33509878	33509945	LINE	L1MC3	L1	chr5L1MC333509856	NonProperStrand	3	chr5	33501385	33501469	protein_coding	Slc5a1	intron	ENSMUSG00000011034	NonProperStrand	541	1	-13.9879
chrX	87238398	87238423	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr9	17987798	17987833	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	1	-8.6046
chr4	24901842	24901875	processed_transcript	Gm11906	.	ENSMUSG00000085885	ProperStrand	15	chr13	97190552	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.8902
chr1	156442383	156442453	protein_coding	Cacna1e	intron	ENSMUSG00000004110	ProperStrand	66	chr18	69846739	69846759	protein_coding	Tcf4	utr3	ENSMUSG00000053477	ProperStrand	144	1	-10.0735
chr12	12815985	12816085	LTR	MLT1B	MaLR	chr12MLT1B12816004	ProperStrand	1	chr1	63587356	63587446	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-inf
chr3	26321224	26321240	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr17	70963685	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-8.2163
chr19	27879716	27879806	protein_coding-noncoding	Rfx3	utr3	ENSMUSG00000040929	ProperStrand	2	chr19	27879613	27879713	protein_coding	Rfx3	intron	ENSMUSG00000040929	ProperStrand	67	2	-inf
chr9	57529038	57529069	protein_coding	Cyp1a2	intron	ENSMUSG00000032310	NonProperStrand	7	chr16	33057167	33057462	protein_coding	Rpl35a	intron	ENSMUSG00000060636	ProperStrand	18	1	-18.9495
chr9	110085735	110085857	protein_coding	Smarcc1	intron	ENSMUSG00000032481	NonProperStrand	43	chr16	24521559	24521587	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	1	-9.7937
chr11	121658639	121658674	SINE	B1_Mus2	Alu	chr11B1_Mus2121658642	NonProperStrand	1	chr11	121670295	121670320	lincRNA	Gm12589	intron	ENSMUSG00000085126	NonProperStrand	3	1	-inf
chr12	78350926	78351058	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr12	21325058	21325074	protein_coding	Iah1	intron	ENSMUSG00000062054	NonProperStrand	5	1	-11.0256
chr7	79464675	79464725	LTR	RMER13A	ERVK	chr7RMER13A79464305	NonProperStrand	5	chr9	123461815	123461876	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39845305	39845350	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	83466477	83466568	LTR	MTEa	MaLR	chr17MTEa83466484	NonProperStrand	1	1	-inf
chr6	7677244	7677276	LTR	RLTR1B	ERV1	chr6RLTR1B7677060	NonProperStrand	5	chr3	9484293	9484388	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-11.6355
chr17	39846950	39847008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	119640691	119640789	protein_coding	Tmbim4	intron	ENSMUSG00000020225	ProperStrand	3	1	-4.3017
chr11	84084734	84085673	protein_coding	Acaca	intron	ENSMUSG00000020532	NonProperStrand	76	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.0440
chr18	65051687	65051759	protein_coding	Nedd4l	intron	ENSMUSG00000024589	ProperStrand	160	chr9	40803582	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.5058
chrX	113104048	113104117	LINE	Lx6	L1	chrXLx6113103933	NonProperStrand	2	chr17	39847608	39847640	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr8	119533230	119533330	protein_coding-noncoding	Pkd1l2	utr3	ENSMUSG00000034416	ProperStrand	6	chr8	119533378	119533468	protein_coding	Pkd1l2	exon	ENSMUSG00000034416	ProperStrand	121	4	-inf
chr16	33959062	33959083	protein_coding	Umps	intron	ENSMUSG00000022814	ProperStrand	19	chr2	5379267	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.8156
chr5	144103641	144103731	LTR	RMER16-int	ERVK	chr5RMER16-int144102177	ProperStrand	7	chr19	10612975	10614151	protein_coding	Cpsf7	intron	ENSMUSG00000034820	ProperStrand	82	3	-inf
chr17	39846766	39846798	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	173275350	173275450	LTR	ORR1D1	MaLR	chr2ORR1D1173275275	ProperStrand	1	1	-inf
chr13	90927653	90927777	LINE	L1Md_F2	L1	chr13L1Md_F290927610	ProperStrand	1	chr13	90927160	90927188	LTR	RLTR26	ERVK	chr13RLTR2690927096	ProperStrand	1	1	-inf
chr17	39848098	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	37279540	37279594	protein_coding	Grhl2	intron	ENSMUSG00000022286	ProperStrand	17	1	-3.6758
chr18	88325184	88325274	SINE	B1_Mus2	Alu	chr18B1_Mus288325161	ProperStrand	1	chr18	88325342	88325442	Simple_repeat	(TCTA)n	Simple_repeat	chr18(TCTA)n88325371	ProperStrand	1	1	-inf
chr13	60664536	60664626	SINE	B1_Mur2	Alu	chr13B1_Mur260664473	NonProperStrand	4	chr13	60664624	60664724	SINE	B4A	B4	chr13B4A60664634	ProperStrand	4	4	-inf
chr9	123461813	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	32709945	32738612	protein_coding	Casp8ap2	intron	ENSMUSG00000028282	ProperStrand	52	3	-4.3524
chr1	23855954	23856054	protein_coding-noncoding	Smap1	utr3	ENSMUSG00000026155	ProperStrand	1	chr1	23856206	23856296	protein_coding	Smap1	exon	ENSMUSG00000026155	ProperStrand	16	1	-inf
chr6	88587156	88587174	LTR	ORR1D1	MaLR	chr6ORR1D188587027	ProperStrand	1	chr13	100719351	100730463	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	43	1	-inf
chr9	122967314	122967373	protein_coding	Tgm4	intron	ENSMUSG00000025787	ProperStrand	19	chr1	134560498	134585203	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	1	-11.7220
chr15	23799517	23799617	LTR	MT2A	ERVL	chr15MT2A23799322	ProperStrand	1	chr15	23799871	23799961	SINE	PB1D7	Alu	chr15PB1D723799889	ProperStrand	1	1	-inf
chr3	31050193	31050237	protein_coding	Cldn11	intron	ENSMUSG00000037625	ProperStrand	10	chr4	24569367	24569418	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-14.5866
chr13	103332233	103332333	LINE	L1_Mus3	L1	chr13L1_Mus3103327211	ProperStrand	7	chr13	103332332	103332421	LINE	L1_Mus3	L1	chr13L1_Mus3103332252	ProperStrand	2	2	-inf
chr15	81020126	81020170	protein_coding	Mkl1	intron	ENSMUSG00000042292	ProperStrand	25	chr5	122175002	122175067	protein_coding	Atxn2	intron	ENSMUSG00000042605	ProperStrand	121	1	-12.3864
chr19	25552392	25552418	LTR	ORR1C2-int	MaLR	chr19ORR1C2-int25552296	ProperStrand	1	chr19	25552235	25552321	LTR	ORR1C2	MaLR	chr19ORR1C225551928	ProperStrand	1	1	-inf
chr16	43598836	43598970	protein_coding	Zbtb20	intron	ENSMUSG00000022708	NonProperStrand	23	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	NonProperStrand	1	1	-inf
chr12	69649067	69649167	LINE	L1MA7	L1	chr12L1MA769649063	ProperStrand	1	chr12	69649476	69649566	LINE	L1MA7	L1	chr12L1MA769649352	ProperStrand	1	1	-inf
chr6	142374869	142376796	protein_coding	Gys2	intron	ENSMUSG00000030244	ProperStrand	5	chr6	142365554	142365584	protein_coding	B230216G23Rik	intron	ENSMUSG00000071112	NonProperStrand	7	1	-21.1751
chr2	91066299	91066389	protein_coding	Ddb2	intron	ENSMUSG00000002109	ProperStrand	5	chr2	91646320	91646420	protein_coding	Ambra1	intron	ENSMUSG00000040506	NonProperStrand	61	1	-17.2064
chr15	85177752	85177788	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr1	63545535	63546454	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-5.3833
chr2	85378582	85378682	LINE	Lx4A	L1	chr2Lx4A85378481	ProperStrand	1	chr2	85378966	85379056	LINE	Lx4A	L1	chr2Lx4A85378743	NonProperStrand	1	1	-inf
chr7	68799590	68799690	LINE	L1_Mur2	L1	chr7L1_Mur268799474	ProperStrand	1	chr7	68799323	68799413	LINE	Lx2	L1	chr7Lx268799178	NonProperStrand	1	1	-inf
chr1	192745640	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr16	30579768	30579873	protein_coding	Lsg1	intron	ENSMUSG00000022538	ProperStrand	31	1	-13.8087
chr3	135556985	135557017	LINE	Lx	L1	chr3Lx135555939	NonProperStrand	6	chr3	135560877	135560952	LTR	ORR1D2	MaLR	chr3ORR1D2135560725	NonProperStrand	1	1	-inf
chr15	8354689	8354739	protein_coding	Nipbl	intron	ENSMUSG00000022141	ProperStrand	59	chr16	94627798	94627901	protein_coding	Ttc3	intron	ENSMUSG00000040785	ProperStrand	131	1	-10.4885
chr9	97080373	97080410	protein_coding	Rpl7a-ps10	utr3	ENSMUSG00000070289	NonProperStrand	2	chr16	19883805	19883822	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-16.3572
chr16	24393382	24393472	lincRNA	1110054M08Rik	intron	ENSMUSG00000091210	NonProperStrand	2	chr16	24393469	24393569	protein_coding	Lpp	utr5	ENSMUSG00000033306	ProperStrand	255	2	-inf
chr10	89257301	89257360	protein_coding	Uhrf1bp1l	exon	ENSMUSG00000019951	NonProperStrand	3	chr9	114671395	114671490	protein_coding	Cmtm7	intron	ENSMUSG00000032436	ProperStrand	11	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr9	15315523	15315593	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-4.4576
chr16	16110327	16110406	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	chr10	11174208	11174267	protein_coding	Epm2a	intron	ENSMUSG00000055493	ProperStrand	13	1	-13.9606
chr9	67897136	67898661	LTR	RLTR1B-int	ERV1	chr9RLTR1B-int67896679	ProperStrand	1	chr5	21783050	21783150	protein_coding	Reln	intron	ENSMUSG00000042453	ProperStrand	45	1	-inf
chr1	149777231	149777321	DNA	URR1A	MER1_type	chr1URR1A149777213	NonProperStrand	1	chr1	149777335	149777435	LTR	RLTR22_Mus	ERVK	chr1RLTR22_Mus149777364	ProperStrand	1	1	-inf
chr10	121600835	121600869	LINE	L1Md_A	L1	chr10L1Md_A121599362	NonProperStrand	2	chr9	110281345	110281369	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-15.0096
chr16	11148449	11148503	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	23	chr14	27428180	27428276	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-13.9031
chr17	39847174	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	13886314	13886410	protein_coding	2410022L05Rik	intron	ENSMUSG00000031458	ProperStrand	8	1	-3.3803
chr16	90015105	90015193	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr1	162649508	162649525	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	NonProperStrand	41	1	-7.0708
chr12	78350925	78351005	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr1	72255081	72255151	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-5.2385
chr7	112789499	112789599	protein_coding-noncoding	Fxc1	utr5	ENSMUSG00000089847	NonProperStrand	1	chr7	112789756	112789846	protein_coding	Fxc1	utr3	ENSMUSG00000089847	NonProperStrand	2	1	-inf
chr17	39843707	39843803	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	29994849	29994867	protein_coding	Mdga1	intron	ENSMUSG00000043557	ProperStrand	16	1	-5.4983
chr5	146261127	146261182	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	5625391	5625425	sense_intronic	RP23-345J21.1	.	ENSMUSG00000093717	ProperStrand	12	1	-8.2893
chr8	106689719	106689819	SINE	B2_Mm2	B2	chr8B2_Mm2106689643	ProperStrand	3	chr8	106689394	106689484	SINE	B3	B2	chr8B3106689365	ProperStrand	3	3	-inf
chr17	39847636	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	133604791	133604889	protein_coding	Fam199x	intron	ENSMUSG00000042595	NonProperStrand	2	1	-5.4040
chr6	88490933	88491011	LINE	L1_Mur3	L1	chr6L1_Mur388490766	NonProperStrand	1	chr13	93095626	93095643	protein_coding	Msh3	intron	ENSMUSG00000014850	NonProperStrand	7	1	-inf
chr17	39844711	39844731	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr3	84505787	84505828	protein_coding	Arfip1	intron	ENSMUSG00000074513	ProperStrand	40	1	-3.2992
chr5	146261007	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	25680733	25682561	protein_coding	Ido2	intron	ENSMUSG00000031549	NonProperStrand	18	1	-7.4564
chr1	59698435	59702823	protein_coding-noncoding	Sumo1	utr3	ENSMUSG00000026021	NonProperStrand	2	chr1	59696095	59698408	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	1	-20.1199
chrX	153237715	153237736	LINE	L1_Mur1	L1	chrXL1_Mur1153237544	NonProperStrand	2	chr1	72244296	72244400	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-18.6719
chr5	114392060	114392137	protein_coding	Ssh1	utr3	ENSMUSG00000042121	NonProperStrand	37	chr13	97190572	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0707
chrX	87238364	87238390	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr16	35981604	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	2	-11.7952
chr4	92594208	92594226	LINE	L1Md_A	L1	chr4L1Md_A92591594	ProperStrand	1	chr17	39847701	39847729	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	110853781	110853810	lincRNA	Rian	intron	ENSMUSG00000091793	ProperStrand	27	chr7	25273410	25273534	protein_coding	Cadm4	intron	ENSMUSG00000054793	ProperStrand	89	1	-12.8455
chr4	116802737	116802827	protein_coding-noncoding	Plk3	utr3	ENSMUSG00000028680	NonProperStrand	3	chr4	116802855	116802955	protein_coding	Plk3	exon	ENSMUSG00000028680	NonProperStrand	10	3	-inf
chr6	131379385	131379459	Other	RMER1B	Other	chr6RMER1B131379406	ProperStrand	14	chr6	131380892	131380956	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	17	2	-19.8031
chr17	39848626	39848680	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	69395920	69396193	protein_coding	Trp53	intron	ENSMUSG00000059552	ProperStrand	2	1	-8.7208
chr18	23500594	23500673	LINE	Lx7	L1	chr18Lx723500000	NonProperStrand	1	chr17	39846294	39846355	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr5	28077812	28077902	protein_coding	Paxip1	intron	ENSMUSG00000002221	NonProperStrand	65	chr15	80081711	80081748	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	3	-17.8408
chr11	115600742	115600859	SINE	B2_Mm2	B2	chr11B2_Mm2115600715	ProperStrand	1	chr8	60969053	60969074	protein_coding	Galntl6	intron	ENSMUSG00000061864	ProperStrand	140	1	-inf
mmu-miR-466i-5p	1	18	miRNA	mmu-miR-466i-5p	.	mmu-miR-466i-5p	ProperStrand	6	chr2	150790117	150790196	protein_coding	Ninl	intron	ENSMUSG00000068115	NonProperStrand	24	1	-18.9659
chr11	87596383	87596458	protein_coding-noncoding	Bzrap1	utr5	ENSMUSG00000034156	ProperStrand	3	chr11	87596146	87596229	protein_coding	Bzrap1	utr3	ENSMUSG00000034156	ProperStrand	10	2	-20.5317
chr17	39847981	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	103363540	103363612	protein_coding	Ppp1r1a	intron	ENSMUSG00000022490	NonProperStrand	2	2	-inf
chr12	78350934	78351044	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr2	92191200	92191220	protein_coding	Phf21a	intron	ENSMUSG00000058318	ProperStrand	24	1	-7.7239
chr10	128240491	128241308	protein_coding-noncoding	Tmem198b	utr5	ENSMUSG00000047090	NonProperStrand	1	chr10	128240397	128240487	protein_coding	Tmem198b	utr5	ENSMUSG00000047090	NonProperStrand	2	1	-inf
chr13	100813282	100813369	protein_coding	Bdp1	intron	ENSMUSG00000049658	ProperStrand	27	chr15	81952717	81952734	protein_coding	Mei1	intron	ENSMUSG00000068117	NonProperStrand	96	1	-12.6931
chr17	23815418	23815508	SINE	B1_Mm	Alu	chr17B1_Mm23815345	NonProperStrand	2	chr17	23815536	23815636	SINE	B1_Mur3	Alu	chr17B1_Mur323815494	NonProperStrand	5	2	-inf
chr2	90940480	90940570	protein_coding	Sfpi1	intron	ENSMUSG00000002111	ProperStrand	32	chr2	90998597	90998697	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	1	-12.3271
chr7	25109602	25109702	LTR	RMER19C	ERVK	chr7RMER19C25109043	NonProperStrand	6	chr7	25109704	25109794	SINE	B1_Mur4	Alu	chr7B1_Mur425109727	ProperStrand	6	6	-inf
chr18	65048375	65048425	protein_coding	Nedd4l	intron	ENSMUSG00000024589	ProperStrand	160	chr15	77258434	77258494	protein_coding	Apol7b	intron	ENSMUSG00000068252	ProperStrand	50	1	-10.4215
chr9	115282225	115282287	LINE	Lx	L1	chr9Lx115281495	NonProperStrand	1	chr2	102829376	102829448	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	1	-inf
chr1	156912228	156912293	lincRNA	Gm9530	intron	ENSMUSG00000086217	ProperStrand	8	chr11	76605120	76605179	protein_coding	Cpd	intron	ENSMUSG00000020841	ProperStrand	111	1	-14.9242
chr17	39846655	39846696	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	24086212	24086244	protein_coding	Sbp	intron	ENSMUSG00000024128	NonProperStrand	3	1	-4.3017
chr7	5772074	5772174	LINE	Lx2	L1	chr7Lx25771827	NonProperStrand	1	chr6	120670203	120670293	protein_coding	Cecr2	intron	ENSMUSG00000071226	NonProperStrand	17	1	-inf
chr13	91673641	91797200	protein_coding-noncoding	Ssbp2	utr5	ENSMUSG00000003992	NonProperStrand	2	chr13	91673902	91800701	protein_coding	Ssbp2	intron	ENSMUSG00000003992	NonProperStrand	14	2	-inf
chr13	60934377	60934467	LINE	L1_Mur3	L1	chr13L1_Mur360934000	NonProperStrand	4	chr8	85930863	85930963	protein_coding	Clgn	intron	ENSMUSG00000002190	ProperStrand	14	1	-20.8232
chr11	88051038	88051128	SINE	B1_Mur4	Alu	chr11B1_Mur488050959	ProperStrand	3	chr11	88051227	88051327	SINE	B3A	B2	chr11B3A88051212	ProperStrand	3	1	-20.2168
chr14	57834461	57834509	LTR	ORR1E	MaLR	chr14ORR1E57834236	ProperStrand	2	chr17	39846787	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	157160909	157160985	protein_coding	Ghrh	intron	ENSMUSG00000027643	ProperStrand	3	1	-4.3017
chr5	114851973	114852007	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr13	9614455	9615759	protein_coding	Dip2c	intron	ENSMUSG00000048264	NonProperStrand	18	1	-11.7455
chr17	39846453	39846630	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	155242799	155277884	protein_coding	Ncoa6	intron	ENSMUSG00000038369	NonProperStrand	8	2	-4.2675
chr4	133124791	133124852	SINE	B1_Mus2	Alu	chr4B1_Mus2133124774	ProperStrand	1	chr4	108249486	108249518	protein_coding	Prpf38a	intron	ENSMUSG00000063800	ProperStrand	7	1	-inf
chr4	108064713	108064739	SINE	B1_Mus1	Alu	chr4B1_Mus1108064605	ProperStrand	1	chr2	122123778	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr13	59632156	59632211	protein_coding	Agtpbp1	intron	ENSMUSG00000021557	ProperStrand	60	chr2	121877593	121877658	protein_coding	Eif3j	intron	ENSMUSG00000027236	ProperStrand	6	1	-16.8916
chr7	65345439	65345540	LINE	Lx	L1	chr7Lx65345069	NonProperStrand	1	chr2	5379296	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr11	62528264	62528315	protein_coding	Zfp287	exon	ENSMUSG00000005267	ProperStrand	16	chr9	123462101	123462142	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr7	15629321	15629411	LINE	L1Md_F2	L1	chr7L1Md_F215628830	NonProperStrand	1	chr7	15629514	15629614	LTR	RLTR13A	ERVK	chr7RLTR13A15629398	ProperStrand	1	1	-inf
chr2	44333202	44333219	LINE	Lx6	L1	chr2Lx644332995	ProperStrand	2	chr5	146261031	146261103	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-12.4657
chr9	123461905	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	61555714	61555733	protein_coding	Ppargc1b	intron	ENSMUSG00000033871	ProperStrand	7	1	-5.1121
chr6	49236498	49236562	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr8	72381435	72381471	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	1	-8.0110
chr4	94555762	94555783	LINE	L1_Mur3	L1	chr4L1_Mur394555762	ProperStrand	1	chr11	116570493	116570594	SINE	B1F1	Alu	chr11B1F1116570459	ProperStrand	3	1	-inf
chr16	18564105	18564121	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	chr6	32801586	32801673	protein_coding	Chchd3	utr3	ENSMUSG00000053768	ProperStrand	204	1	-10.8371
chr11	116757691	116757747	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr9	123461885	123461950	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-3.1860
chr14	18200580	18200620	LINE	L1_Mus4	L1	chr14L1_Mus418200307	ProperStrand	1	chrX	20678634	20678653	LINE	L1_Mm	L1	chrXL1_Mm20678267	NonProperStrand	10	1	-inf
chr17	39846822	39846880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	25336817	25336910	SINE	B3A	B2	chr2B3A25336767	ProperStrand	1	1	-inf
chr18	46527446	46527546	LTR	RMER17C	ERVK	chr18RMER17C46527448	NonProperStrand	4	chr18	46527338	46527427	Simple_repeat	(TG)n	Simple_repeat	chr18(TG)n46527268	ProperStrand	4	4	-inf
chr17	39847659	39847762	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	117444434	117444490	SINE	B1_Mus2	Alu	chr4B1_Mus2117444356	ProperStrand	1	1	-inf
chr6	19876477	19876567	LINE	Lx5	L1	chr6Lx519876316	ProperStrand	1	chr6	19876672	19876772	LTR	RLTR13B2	ERVK	chr6RLTR13B219876601	ProperStrand	1	1	-inf
chr2	26014930	26014949	SINE	B3A	B2	chr2B3A26014851	ProperStrand	1	chr13	97190561	97190614	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr5	108083282	108083307	protein_coding	Rpap2	intron	ENSMUSG00000033773	ProperStrand	96	chr9	104017493	104017582	protein_coding	Acad11	intron	ENSMUSG00000090150	ProperStrand	10	1	-14.7465
chr13	15893432	15893532	LINE	L1Md_T	L1	chr13L1Md_T15892844	NonProperStrand	2	chr13	15893739	15893829	LINE	L2c	L2	chr13L2c15893665	NonProperStrand	1	1	-inf
chr2	73693619	73693657	protein_coding	Atf2	intron	ENSMUSG00000027104	ProperStrand	38	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-11.3762
chr3	22149513	22149603	LTR	IAPEY3-int	ERVK	chr3IAPEY3-int22149064	NonProperStrand	1	chr3	22149608	22149708	LTR	IAPEY3-int	ERVK	chr3IAPEY3-int22149507	NonProperStrand	1	1	-inf
chr4	132282967	132283027	protein_coding	Xkr8	utr3	ENSMUSG00000037752	NonProperStrand	4	chr16	23110837	23110936	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-17.6295
chr14	55824261	55824299	LINE	Lx7	L1	chr14Lx755824113	NonProperStrand	4	chr8	70513850	70513914	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-13.0748
chr7	30894188	30894278	LTR	MTB_Mm	MaLR	chr7MTB_Mm30893859	ProperStrand	1	chr7	30894476	30894576	SINE	B1_Mur1	Alu	chr7B1_Mur130894418	NonProperStrand	1	1	-inf
chr11	109011745	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr6	128839046	128839149	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	1	-8.5158
chr11	69982503	69982603	protein_coding	Clec10a	intron	ENSMUSG00000000318	ProperStrand	3	chr11	67484096	67484186	protein_coding	Glp2r	intron	ENSMUSG00000049928	ProperStrand	4	1	-inf
chr17	84752021	84752065	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	164	chr11	113335928	113335962	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-6.9769
chrX	110911252	110911352	protein_coding	Dach2	intron	ENSMUSG00000025592	ProperStrand	8	chr1	194306322	194306412	protein_coding	Kcnh1	intron	ENSMUSG00000058248	ProperStrand	11	1	-20.8373
chr11	22884961	22885061	LTR	RLTR18B	ERVK	chr11RLTR18B22884951	NonProperStrand	1	chr11	22884527	22884617	SINE	B2_Mm1t	B2	chr11B2_Mm1t22884525	ProperStrand	1	1	-inf
chr5	34004570	34004660	protein_coding-noncoding	Tacc3	utr5	ENSMUSG00000037313	ProperStrand	1	chr5	34004656	34004756	protein_coding	Tacc3	intron	ENSMUSG00000037313	ProperStrand	2	1	-inf
chrX	11840367	11840467	SINE	B1_Mur2	Alu	chrXB1_Mur211840332	ProperStrand	4	chrX	11840498	11840588	SINE	B4A	B4	chrXB4A11840484	ProperStrand	4	4	-inf
chr2	126433086	126433176	protein_coding-noncoding	Hdc	utr3	ENSMUSG00000027360	ProperStrand	1	chr2	126432672	126432772	protein_coding	Hdc	intron	ENSMUSG00000027360	ProperStrand	1	1	-inf
chr15	34273343	34276158	protein_coding	Matn2	intron	ENSMUSG00000022324	ProperStrand	45	chr2	5379270	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.1038
chr13	97190562	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr5	89360825	89360897	protein_coding	Slc4a4	intron	ENSMUSG00000060961	ProperStrand	12	1	-8.3507
chr17	39846658	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	17522755	17522855	protein_coding-noncoding	Lztr1	utr5	ENSMUSG00000022761	ProperStrand	2	1	-5.3533
chr18	35554489	35554588	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr1	87476989	87477006	protein_coding	Sp110	intron	ENSMUSG00000070034	ProperStrand	3	1	-14.7818
chr17	39847741	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	25778044	25778112	LTR	IAPEz-int	ERVK	chr4IAPEz-int25776877	ProperStrand	4	1	-3.7035
chr7	27413024	27413114	LINE	L1_Rod	L1	chr7L1_Rod27412771	ProperStrand	1	chr6	71641674	71641774	LTR	RLTR13B2	ERVK	chr6RLTR13B271641666	ProperStrand	1	1	-inf
chr2	104559446	104559487	SINE	RSINE1	B4	chr2RSINE1104559391	NonProperStrand	3	chr11	19970418	19970489	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	1	-16.1194
chr1	179366915	179366978	lincRNA	Gm17407	intron	ENSMUSG00000078909	ProperStrand	35	chr6	90469776	90469856	protein_coding	Aldh1l1	intron	ENSMUSG00000030088	ProperStrand	124	2	-18.4304
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	chr9	40803994	40804078	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-8.1059
chr17	39843362	39843461	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr18	56752640	56752700	protein_coding	1700065I17Rik	intron	ENSMUSG00000032900	ProperStrand	18	1	-4.8054
chr17	39847246	39847275	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	56997509	56998453	protein_coding	Acsbg2	intron	ENSMUSG00000024207	NonProperStrand	7	2	-6.4010
chr4	137904705	137904763	protein_coding	Cda	intron	ENSMUSG00000028755	NonProperStrand	48	chr4	137865573	137865646	protein_coding	Ddost	intron	ENSMUSG00000028757	ProperStrand	21	2	-21.8147
chr19	14764404	14764504	SINE	B2_Mm1a	B2	chr19B2_Mm1a14764301	ProperStrand	1	chr19	14764645	14764735	SINE	B2_Mm1t	B2	chr19B2_Mm1t14764609	ProperStrand	1	1	-inf
chr2	29147269	29147386	LINE	L3	CR1	chr2L329147210	ProperStrand	3	chr2	29182125	29182164	SINE	B1_Mur4	Alu	chr2B1_Mur429182077	NonProperStrand	1	1	-inf
chr1	54994423	54995417	LINE	Lx8	L1	chr1Lx854994930	NonProperStrand	5	chr1	54990547	54994401	LTR	RMER19B	ERVK	chr1RMER19B54994050	ProperStrand	3	3	-inf
chr16	19043639	19043698	LINE	L1VL4	L1	chr16L1VL419043394	NonProperStrand	2	chr12	110694274	110694299	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-16.6112
chr1	60500572	60501797	protein_coding	Abi2	intron	ENSMUSG00000026782	NonProperStrand	40	chr12	41482195	41482295	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-9.4553
chrX	144553461	144553527	LINE	L1_Mus1	L1	chrXL1_Mus1144553193	NonProperStrand	1	chr15	37001892	37001938	LTR	RMER5	ERV1	chr15RMER537001891	ProperStrand	1	1	-inf
chr11	9135290	9135972	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	chr2	32164297	32164319	protein_coding	Dnm1	utr3	ENSMUSG00000026825	NonProperStrand	224	1	-8.9887
chrX	71335301	71335392	SINE	B4	B4	chrXB471335310	NonProperStrand	1	chr16	56889077	56889177	lincRNA	Gm15839	intron	ENSMUSG00000084999	ProperStrand	1	1	-inf
chr5	146261005	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr12	67665449	67665521	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	2	-7.4961
chr14	55559766	55559866	Simple_repeat	(CAGA)n	Simple_repeat	chr14(CAGA)n55559668	NonProperStrand	1	chr14	55557834	55557924	protein_coding	Cmtm5	utr3	ENSMUSG00000040759	NonProperStrand	1	1	-inf
chr5	33521028	33521155	LTR	RMER19B	ERVK	chr5RMER19B33520995	ProperStrand	13	chr5	33521156	33521248	SINE	B2_Mm2	B2	chr5B2_Mm233521131	NonProperStrand	17	8	-inf
chr14	60670772	60670850	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr2	90395151	90395174	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-7.2990
chrX	85599059	85599154	LTR	ORR1A0	MaLR	chrXORR1A085599012	NonProperStrand	1	chr9	123461945	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	91321919	91322031	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n91321927	ProperStrand	5	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr2	27686670	27686770	LTR	MTE2a	MaLR	chr2MTE2a27686437	NonProperStrand	3	chr8	60659513	60659603	lincRNA	Gm17517	intron	ENSMUSG00000091944	ProperStrand	4	1	-inf
chr17	39847186	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	7867558	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	9	2	-5.5822
chr16	52094639	52094746	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	chr7	109521302	109521339	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-8.9411
chrX	13562411	13562511	LINE	L1M2	L1	chrXL1M213562403	NonProperStrand	1	chrX	13562181	13562271	LINE	Lx9	L1	chrXLx913561794	NonProperStrand	1	1	-inf
chr2	30069575	30070218	SINE	B2_Mm1t	B2	chr2B2_Mm1t30069525	ProperStrand	11	chr9	72662577	72662611	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-12.1135
chr5	31785625	31820520	LTR	MTD	MaLR	chr5MTD31785443	NonProperStrand	1	chr5	31820525	31820625	protein_coding	Supt7l	utr3	ENSMUSG00000053134	NonProperStrand	4	1	-inf
chr7	104222180	104222222	LINE	Lx3_Mus	L1	chr7Lx3_Mus104221966	ProperStrand	6	chr8	105936243	105936350	LINE	L1Md_F3	L1	chr8L1Md_F3105935867	NonProperStrand	1	1	-inf
chr3	90508949	90509029	LINE	L1_Rod	L1	chr3L1_Rod90508841	ProperStrand	12	chr6	38553388	38553438	protein_coding	Luc7l2	exon	ENSMUSG00000029823	ProperStrand	46	1	-15.8646
chr2	122224916	122225016	LINE	Lx4A	L1	chr2Lx4A122224881	ProperStrand	1	chr2	122224694	122224784	LTR	MTD	MaLR	chr2MTD122224618	NonProperStrand	1	1	-inf
chr17	43020687	43020767	LTR	MTD	MaLR	chr17MTD43020700	NonProperStrand	1	chr17	43021202	43021262	SINE	B1_Mus1	Alu	chr17B1_Mus143021127	ProperStrand	2	1	-inf
chr2	11743679	11747101	LINE	Lx4B	L1	chr2Lx4B11743147	NonProperStrand	1	chr12	21417177	21417195	protein_coding	Ywhaq	intron	ENSMUSG00000076432	NonProperStrand	3	1	-inf
chr17	39845475	39845550	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr13	112845636	112845721	Simple_repeat	(TA)n	Simple_repeat	chr13(TA)n112845620	ProperStrand	1	1	-inf
chr17	34952236	34952311	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr11	33239385	33239450	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	2	-9.8564
chr13	87428389	87428479	LINE	Lx6	L1	chr13Lx687428353	ProperStrand	1	chr13	87428045	87428145	LINE	Lx8	L1	chr13Lx887427925	ProperStrand	1	1	-inf
chr4	140628149	140628198	protein_coding	Necap2	intron	ENSMUSG00000028923	ProperStrand	7	chr5	31073582	31073644	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	1	-14.1724
chr14	63500657	63500762	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	chr6	124811208	124811252	protein_coding	Gpr162	exon	ENSMUSG00000038390	ProperStrand	81	1	-9.6487
chr6	95691052	95691127	LTR	MTE-int	MaLR	chr6MTE-int95691046	NonProperStrand	1	chr6	95690953	95691016	SINE	B1_Mus1	Alu	chr6B1_Mus195690906	ProperStrand	1	1	-inf
chr18	34252422	34252522	LTR	RMER10A	ERVL	chr18RMER10A34252425	NonProperStrand	2	chr5	122793550	122799345	protein_coding	Rad9b	intron	ENSMUSG00000038569	ProperStrand	44	1	-19.8653
chr2	122028883	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	chr3	86139185	86141302	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-11.9896
chr10	80053764	80053854	SINE	B2_Mm1a	B2	chr10B2_Mm1a80053749	NonProperStrand	4	chr10	80053927	80054027	SINE	RSINE1	B4	chr10RSINE180053956	NonProperStrand	7	3	-inf
chr8	114878885	114878975	LINE	L1MC3	L1	chr8L1MC3114878844	NonProperStrand	2	chr8	114878978	114879078	SINE	B3A	B2	chr8B3A114878967	NonProperStrand	2	2	-inf
chr8	41331415	41331434	LINE	L1Md_T	L1	chr8L1Md_T41331144	NonProperStrand	4	chr15	93268846	93268974	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	1	-17.8071
chr18	35979850	35979921	SINE	B1_Mur1	Alu	chr18B1_Mur135979800	ProperStrand	1	chr18	36014084	36014145	protein_coding	Cxxc5	intron	ENSMUSG00000046668	ProperStrand	7	1	-inf
chr5	146261266	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr3	153912159	153912257	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	1	-4.7840
chr18	55405390	55405408	LINE	L1Md_F2	L1	chr18L1Md_F255405344	NonProperStrand	2	chr9	123461794	123461821	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr13	97190590	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr8	94173155	94173417	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	1	-3.5848
chr3	31205930	31206025	lincRNA	Gm15496	intron	ENSMUSG00000085953	ProperStrand	11	chr18	9877656	9877721	protein_coding	Colec12	utr3	ENSMUSG00000036103	NonProperStrand	14	1	-18.3062
chr17	39846906	39846951	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	106673085	106673193	LTR	RMER6A	ERVK	chr8RMER6A106672770	NonProperStrand	1	1	-inf
chr5	118255816	118259064	protein_coding	Nos1	intron	ENSMUSG00000029361	ProperStrand	30	chr11	105483380	105483397	protein_coding	Tanc2	intron	ENSMUSG00000053580	NonProperStrand	26	1	-15.1278
chr6	30667663	30667697	LINE	L1MC4a	L1	chr6L1MC4a30667615	ProperStrand	1	chr17	39847658	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	4886469	4886502	protein_coding	Mgrn1	intron	ENSMUSG00000022517	ProperStrand	49	chr13	44869625	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.8822
chr16	13343848	13343921	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	chr11	88555270	88555302	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-4.4454
chr5	115622149	115622222	protein_coding	Cabp1	intron	ENSMUSG00000029544	NonProperStrand	56	chr13	44869588	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.6247
chr9	103326201	103326306	lincRNA	5830418P13Rik	intron	ENSMUSG00000086236	ProperStrand	54	chr13	97190561	97190605	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.3273
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr17	27577408	27577516	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-7.7450
chr18	64859076	64859167	SINE	B2_Mm1a	B2	chr18B2_Mm1a64859017	NonProperStrand	1	chr9	123461822	123461877	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	112691979	112692079	Low_complexity	GA-rich	Low_complexity	chr7GA-rich112691982	ProperStrand	4	chr7	112691864	112691954	Simple_repeat	(GAAAA)n	Simple_repeat	chr7(GAAAA)n112691853	ProperStrand	4	4	-inf
chr11	97797103	97797162	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	chr1	127980976	127981035	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-7.7112
chr17	87694871	87694915	protein_coding	Ttc7	intron	ENSMUSG00000036918	ProperStrand	70	chr13	55553002	55553115	protein_coding	Grk6	intron	ENSMUSG00000074886	NonProperStrand	87	1	-10.9653
chrX	59295044	59295144	LINE	L1_Mus1	L1	chrXL1_Mus159293953	ProperStrand	1	chr17	35384431	35384521	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	1	-inf
chr4	80278483	80278583	LTR	MTE2a	MaLR	chr4MTE2a80278436	ProperStrand	1	chr4	80278711	80278801	SINE	B1_Mm	Alu	chr4B1_Mm80278727	NonProperStrand	1	1	-inf
chr6	3201039	3201283	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	100183558	100183671	protein_coding	RP24-73K9.3	utr5	ENSMUSG00000093789	ProperStrand	22	1	-4.7755
chr4	53860712	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr7	3298019	3298103	protein_coding	Myadm	utr3	ENSMUSG00000068566	ProperStrand	30	1	-10.8262
chr4	134837303	134837403	SINE	ID_B1	B4	chr4ID_B1134837270	NonProperStrand	3	chr4	134837443	134837533	SINE	PB1D7	Alu	chr4PB1D7134837437	NonProperStrand	3	3	-inf
chr8	26114630	26114696	protein_coding	Adam9	intron	ENSMUSG00000031555	ProperStrand	13	chr10	88906367	88906384	protein_coding	Gas2l3	intron	ENSMUSG00000074802	ProperStrand	4	1	-inf
chr13	58127811	58127911	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	213	chr5	9156548	9156638	protein_coding	Dmtf1	intron	ENSMUSG00000042508	ProperStrand	25	1	-11.2526
chr17	17834695	17834763	LINE	L1Md_F2	L1	chr17L1Md_F217832863	ProperStrand	2	chr4	118245024	118245075	protein_coding	Wdr65	intron	ENSMUSG00000028730	ProperStrand	288	1	-16.3371
chr2	177927376	177927412	protein_coding	Phactr3	intron	ENSMUSG00000027525	NonProperStrand	33	chr11	54953551	54953639	protein_coding	Slc36a3	intron	ENSMUSG00000049491	ProperStrand	154	1	-11.3379
chrX	36016215	36016232	LINE	L1Md_A	L1	chrXL1Md_A36014900	NonProperStrand	2	chr1	95316534	95316651	protein_coding	Hdlbp	intron	ENSMUSG00000034088	NonProperStrand	4	1	-22.1285
chr16	91926920	91928936	protein_coding	Atp5o	intron	ENSMUSG00000022956	ProperStrand	18	chr2	157838008	157838098	protein_coding	Tti1	intron	ENSMUSG00000027650	NonProperStrand	64	1	-14.3370
chr6	115807971	115808049	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	chr8	124637250	124637301	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.0642
chr5	79692478	79692568	LTR	MTD-int	MaLR	chr5MTD-int79692426	NonProperStrand	1	chr5	79692146	79692246	LTR	MTD	MaLR	chr5MTD79692028	NonProperStrand	1	1	-inf
chr17	39847956	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	155124519	155124632	protein_coding	Atad3a	intron	ENSMUSG00000029036	NonProperStrand	4	1	-3.7035
chr18	67956260	67956350	LINE	L1_Mus1	L1	chr18L1_Mus167956166	ProperStrand	1	chr18	67956023	67956123	SINE	B3A	B2	chr18B3A67955954	ProperStrand	1	1	-inf
chr6	57508123	57508213	LINE	L1_Mur3	L1	chr6L1_Mur357507948	ProperStrand	3	chr11	60325370	60325470	protein_coding	Myo15	intron	ENSMUSG00000042678	NonProperStrand	36	1	-19.7959
chr4	117002758	117002987	protein_coding	Rnf220	intron	ENSMUSG00000028677	NonProperStrand	93	chr16	67515177	67515230	protein_coding	Cadm2	intron	ENSMUSG00000064115	ProperStrand	39	1	-12.0111
chr11	116434344	116434563	protein_coding	Ube2o	intron	ENSMUSG00000020802	NonProperStrand	55	chr6	95552858	95552927	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-10.3059
chr1	173738558	173738658	LINE	L1Md_F2	L1	chr1L1Md_F2173738475	ProperStrand	1	chr1	173738370	173738460	Low_complexity	GA-rich	Low_complexity	chr1GA-rich173738300	ProperStrand	1	1	-inf
chr10	87930878	87930894	protein_coding	Sycp3	intron	ENSMUSG00000020059	ProperStrand	3	chr6	108282382	108282502	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	1	-14.7988
chr10	81181611	81181937	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	chr2	32963311	32963384	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-6.7485
chr13	14625221	14625354	LINE	Lx6	L1	chr13Lx614625074	ProperStrand	1	chr6	98994526	98994588	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	1	-inf
chr17	39847404	39847456	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	86495627	86495689	Simple_repeat	(TCTA)n	Simple_repeat	chr15(TCTA)n86495518	ProperStrand	1	1	-inf
chr2	59773729	59773819	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	chr9	78150553	78150653	protein_coding	Gm10639	intron	ENSMUSG00000074179	ProperStrand	14	1	-13.0668
chr11	4413138	4413174	protein_coding	Mtmr3	intron	ENSMUSG00000034354	ProperStrand	84	chr2	5379297	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.9109
chr1	136364891	136364951	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr3	27588998	27589068	protein_coding	Fndc3b	intron	ENSMUSG00000039286	ProperStrand	140	1	-8.6823
chr7	100444402	100448763	LINE	L1Md_F2	L1	chr7L1Md_F2100444474	ProperStrand	2	chr7	100451603	100451703	LINE	Lx2B	L1	chr7Lx2B100451619	NonProperStrand	1	1	-inf
chr6	82725620	82725699	LINE	L2	L2	chr6L282725594	NonProperStrand	2	chr17	39846941	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr1	138594962	138595018	lincRNA	Gm16880	intron	ENSMUSG00000085011	NonProperStrand	16	chr5	115272483	115272534	protein_coding	2610524H06Rik	exon	ENSMUSG00000092486	ProperStrand	4	1	-inf
chr17	39848163	39848304	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	95785654	95788732	protein_coding	Ces1f	intron	ENSMUSG00000031725	ProperStrand	45	2	-3.5607
chr15	23430212	23430228	LINE	L1_Mur2	L1	chr15L1_Mur223429777	NonProperStrand	4	chr17	39848019	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr5	146261007	146261038	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr3	95659992	95660731	lincRNA	Gm16884	intron	ENSMUSG00000087673	ProperStrand	40	1	-5.8562
chr6	134952904	134953004	DNA	RCHARR1	MER1_type	chr6RCHARR1134952608	ProperStrand	2	chr2	169953619	169953709	protein_coding	Zfp217	intron	ENSMUSG00000052056	ProperStrand	2	2	-inf
chr1	162720516	162720584	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	chr4	119279139	119281601	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	121	1	-8.5402
chr3	30685421	30685509	LTR	MER34A	ERV1	chr3MER34A30685432	ProperStrand	1	chr5	146260994	146261023	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr8	22175925	22176813	LINE	L1Md_F2	L1	chr8L1Md_F222175147	ProperStrand	9	chr17	39847229	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.1539
chr14	120946215	120946805	LINE	L1_Mus2	L1	chr14L1_Mus2120945935	NonProperStrand	12	chr17	3530720	3530820	protein_coding	Tfb1m	intron	ENSMUSG00000036983	ProperStrand	25	1	-17.1041
chr1	76691903	76692003	LINE	L1MDa	L1	chr1L1MDa76691719	NonProperStrand	1	chr1	76692107	76692197	LTR	MTEa	MaLR	chr1MTEa76692048	NonProperStrand	1	1	-inf
chr17	39846352	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	87575447	87594772	protein_coding	Bzrap1	intron	ENSMUSG00000034156	ProperStrand	10	2	-3.6091
chr7	68011382	68011472	LINE	L1Md_F2	L1	chr7L1Md_F268011350	NonProperStrand	1	chr7	68011166	68011266	LINE	L1_Mur1	L1	chr7L1_Mur168010107	NonProperStrand	1	1	-inf
chr7	69161648	69161738	LINE	L1_Mus3	L1	chr7L1_Mus369161375	ProperStrand	1	chr7	69161905	69162005	LTR	RLTR42-int	ERVK	chr7RLTR42-int69161858	ProperStrand	1	1	-inf
chr4	107016043	107016104	protein_coding-noncoding	Yipf1	utr5	ENSMUSG00000057375	NonProperStrand	1	chr4	107018651	107018702	protein_coding	Yipf1	intron	ENSMUSG00000057375	NonProperStrand	3	1	-inf
chr3	108084649	108084690	LTR	ORR1A2	MaLR	chr3ORR1A2108084420	ProperStrand	1	chr3	108081536	108081573	protein_coding	Psma5	intron	ENSMUSG00000068749	NonProperStrand	28	1	-inf
chr17	39845978	39846014	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr10	78237613	78237710	SINE	PB1D7	Alu	chr10PB1D778237580	NonProperStrand	1	1	-inf
chrX	38528453	38528521	LINE	L1Md_T	L1	chrXL1Md_T38527315	ProperStrand	3	chr9	19657695	19657735	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	1	-17.1058
chr1	156823655	156823704	LINE	L1Md_F2	L1	chr1L1Md_F2156823470	NonProperStrand	3	chr9	123462081	123462140	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr5	146260994	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	146261266	146261349	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	8	-14.3009
chr17	39846588	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	122387286	122451063	SINE	PB1D9	Alu	chr14PB1D9122410193	NonProperStrand	6	2	-5.1926
chrX	20672876	20675590	LINE	Lx2A1	L1	chrXLx2A120672806	NonProperStrand	7	chrX	20672464	20672854	LTR	ORR1A1	MaLR	chrXORR1A120672469	NonProperStrand	2	1	-21.4874
chr5	30060640	30060730	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr13	96497855	96497955	protein_coding	Iqgap2	intron	ENSMUSG00000021676	ProperStrand	82	1	-12.9379
chr2	150128903	150128990	LTR	ORR1A4	MaLR	chr2ORR1A4150128861	ProperStrand	1	chr9	123461861	123461903	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	75403926	75404016	LINE	Lx7	L1	chr13Lx775403810	NonProperStrand	1	chr13	75404283	75404383	LINE	Lx7	L1	chr13Lx775403937	NonProperStrand	1	1	-inf
chr19	5800222	5800275	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr14	56737832	56737899	protein_coding	Gzme	intron	ENSMUSG00000022156	ProperStrand	2	1	-11.8135
chr1	192745587	192745687	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr8	85538727	85538817	protein_coding	Rnf150	intron	ENSMUSG00000047747	NonProperStrand	43	1	-13.1453
chr2	163468312	163468371	protein_coding	Serinc3	intron	ENSMUSG00000017707	ProperStrand	12	chr16	36087228	36087310	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	1	-14.4294
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	13879033	13879060	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	12	1	-10.0719
chr4	147754152	147754216	SINE	B4A	B4	chr4B4A147753969	NonProperStrand	1	chr4	147756190	147756240	SINE	PB1D10	Alu	chr4PB1D10147756188	ProperStrand	1	1	-inf
chrX	86192184	86192243	LINE	L1_Mus3	L1	chrXL1_Mus386191381	NonProperStrand	23	chr17	39843770	39843819	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-4.7802
chr8	70199902	70199919	LINE	Lx7	L1	chr8Lx770199123	NonProperStrand	2	chr2	156550912	156550929	protein_coding	Dlgap4	intron	ENSMUSG00000061689	NonProperStrand	5	1	-inf
chr7	116237810	116237906	LINE	L2a	L2	chr7L2a116237810	NonProperStrand	7	chr17	39847277	39847322	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.6430
chr13	58247589	58247686	LTR	MMERVK10C-int	ERVK	chr13MMERVK10C-int58245178	ProperStrand	6	chr17	39846400	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.1926
chr4	14770822	14770912	LTR	ORR1B1	MaLR	chr4ORR1B114770774	ProperStrand	1	chr4	14770585	14770685	Other	RMER1C	Other	chr4RMER1C14770306	NonProperStrand	1	1	-inf
chr2	38834559	38834659	LTR	MT2A	ERVL	chr2MT2A38834520	ProperStrand	1	chr2	38832602	38832692	SINE	ID_B1	B4	chr2ID_B138832623	NonProperStrand	1	1	-inf
chr1	143604728	143604790	LINE	Lx7	L1	chr1Lx7143604489	ProperStrand	1	chr17	39846462	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	34956838	34956938	LINE	Lx4A	L1	chr1Lx4A34956715	NonProperStrand	1	chr1	34957128	34957218	LINE	Lx8	L1	chr1Lx834957110	ProperStrand	1	1	-inf
chrX	103462174	103462194	Low_complexity	CT-rich	Low_complexity	chrXCT-rich103462013	ProperStrand	2	chrX	103462197	103462259	SINE	B1_Mus1	Alu	chrXB1_Mus1103462192	NonProperStrand	6	1	-inf
chr6	113615649	113615693	protein_coding	Irak2	intron	ENSMUSG00000060477	ProperStrand	23	chr4	116793469	116793570	protein_coding	Btbd19	intron	ENSMUSG00000073771	NonProperStrand	4	1	-20.8085
chr6	28652963	28653045	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr7	127582944	127583020	protein_coding	Abca16	intron	ENSMUSG00000051900	ProperStrand	96	1	-5.6087
chr2	4956514	4956614	protein_coding-noncoding	Optn	utr3	ENSMUSG00000026672	NonProperStrand	1	chr2	4955743	4955833	protein_coding	Optn	intron	ENSMUSG00000026672	NonProperStrand	2	1	-inf
chr11	75639498	75639598	SINE	B2_Mm2	B2	chr11B2_Mm275639450	NonProperStrand	2	chr11	75638200	75639489	antisense	Gm12339	.	ENSMUSG00000087059	ProperStrand	13	2	-inf
chr5	146261300	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr12	54696812	54696946	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-6.2550
chr19	45058342	45058388	SINE	B2_Mm2	B2	chr19B2_Mm245058351	ProperStrand	2	chr19	45054669	45054780	protein_coding	Fam178a	intron	ENSMUSG00000036097	ProperStrand	54	2	-inf
chr11	76360258	76360340	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	chr11	67092353	67092369	protein_coding	Myh8	utr5	ENSMUSG00000055775	ProperStrand	10	1	-12.9679
chr12	28438294	28438394	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr13	76864800	76864890	protein_coding	Mctp1	intron	ENSMUSG00000021596	NonProperStrand	18	1	-17.6336
chr4	45661880	45661980	LTR	ORR1B2-int	MaLR	chr4ORR1B2-int45661876	NonProperStrand	1	chr4	45662067	45662157	LTR	RMER19B	ERVK	chr4RMER19B45662019	ProperStrand	1	1	-inf
chr17	23823573	23823673	LTR	MERVL-int	ERVL	chr17MERVL-int23823551	NonProperStrand	31	chr17	23823482	23823573	LTR	ORR1A3-int	MaLR	chr17ORR1A3-int23823464	NonProperStrand	2	2	-inf
chr1	119461433	119461451	LINE	Lx2B	L1	chr1Lx2B119461299	ProperStrand	7	chr6	33604817	33604937	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-11.2193
chr6	125186449	125186549	protein_coding-noncoding	Cd27	utr3	ENSMUSG00000030336	ProperStrand	80	chr17	70798454	70798544	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	1	-7.8672
chr4	123736777	123736840	LINE	L1MEf	L1	chr4L1MEf123736596	ProperStrand	1	chr13	23555320	23555371	protein_coding	Btn1a1	intron	ENSMUSG00000000706	NonProperStrand	212	1	-inf
chr5	110786026	110786200	SINE	B1_Mus1	Alu	chr5B1_Mus1110786029	ProperStrand	7	chr5	110786156	110786361	SINE	B2_Mm2	B2	chr5B2_Mm2110786176	ProperStrand	9	5	-inf
chr17	39846029	39846164	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr10	127710200	127710217	protein_coding	Stat2	intron	ENSMUSG00000040033	ProperStrand	4	1	-7.2834
chr5	30060658	30060748	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr8	126217541	126217641	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-8.4604
chr17	39848099	39848189	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	128548407	128549116	protein_coding	Olfr769	exon	ENSMUSG00000042801	ProperStrand	18	1	-3.5676
chr2	72004961	72005061	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	chr15	79754627	79754717	protein_coding	Cbx7	intron	ENSMUSG00000053411	ProperStrand	55	1	-10.5110
chr9	110281286	110281314	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	2	-12.1672
chr5	135299412	135299502	DNA	Charlie5	MER1_type	chr5Charlie5135299408	ProperStrand	2	chr5	135299302	135299402	SINE	B2_Mm2	B2	chr5B2_Mm2135299220	ProperStrand	2	2	-inf
chr17	39843521	39843541	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	23	chr6	54270711	54270728	lincRNA	9130019P16Rik	intron	ENSMUSG00000073067	ProperStrand	6	1	-19.3169
chr11	118243864	118243943	LINE	L1Md_F2	L1	chr11L1Md_F2118243219	ProperStrand	2	chr11	118198291	118198352	protein_coding	Timp2	intron	ENSMUSG00000017466	ProperStrand	43	1	-20.6040
chr17	39847868	39847979	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	97713173	97713189	protein_coding	Sec22b	intron	ENSMUSG00000027879	NonProperStrand	3	1	-4.3512
chr7	116264426	116264534	LTR	MERVL-int	ERVL	chr7MERVL-int116261974	ProperStrand	64	chr8	84495873	84495918	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-6.3888
chr13	97512228	97512277	LINE	L1Md_F2	L1	chr13L1Md_F297511803	ProperStrand	9	chr2	71901106	71901153	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-14.2290
chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr4	83329318	83329372	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-3.9146
chr17	39847664	39847715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	10206983	10207040	SINE	B4A	B4	chr17B4A10206765	ProperStrand	1	1	-inf
chr2	90854238	90854353	protein_coding	Celf1	utr3	ENSMUSG00000005506	ProperStrand	35	chr9	65910011	65910029	protein_coding	Ppib	intron	ENSMUSG00000032383	NonProperStrand	3	1	-19.5300
chr11	4143044	4143090	SINE	B1_Mus1	Alu	chr11B1_Mus14143012	NonProperStrand	1	chr11	4142221	4142277	SINE	B2_Mm2	B2	chr11B2_Mm24142080	NonProperStrand	1	1	-inf
chr9	44614094	44614174	protein_coding	Mll1	utr3	ENSMUSG00000002028	NonProperStrand	44	chr13	44869622	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.0911
chr17	39847294	39847339	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	117496950	117497049	LTR	RMER15-int	ERVL	chr4RMER15-int117496961	ProperStrand	1	1	-inf
chr5	33795583	33795673	SINE	B1_Mur1	Alu	chr5B1_Mur133795603	ProperStrand	1	chr5	33795777	33795877	Simple_repeat	(CACCAT)n	Simple_repeat	chr5(CACCAT)n33795777	ProperStrand	1	1	-inf
chr7	28841646	28841662	SINE	B1_Mur1	Alu	chr7B1_Mur128841579	NonProperStrand	1	chr5	130103060	130103103	protein_coding	Mmp17	intron	ENSMUSG00000029436	ProperStrand	18	1	-inf
chr4	125508045	125508142	DNA	Charlie7	MER1_type	chr4Charlie7125507981	NonProperStrand	2	chr17	39846807	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr2	85945449	85945539	LINE	Lx7	L1	chr2Lx785945118	ProperStrand	1	chr2	85960849	85960949	pseudogene	Olfr1038-ps	.	ENSMUSG00000050577	ProperStrand	1	1	-inf
chr11	22617340	22617440	LTR	LTR48	ERV1	chr11LTR4822617343	NonProperStrand	1	chr11	22617534	22617624	SINE	B1_Mus2	Alu	chr11B1_Mus222617505	ProperStrand	1	1	-inf
chr17	39846396	39846428	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	127691627	127691734	LTR	MTC	MaLR	chr5MTC127691625	NonProperStrand	1	1	-inf
chrX	74227246	74227315	LINE	L1Md_F2	L1	chrXL1Md_F274226898	NonProperStrand	14	chr9	123461959	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr1	161035870	161035912	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chrX	136739487	136739568	lincRNA	Gm15046	intron	ENSMUSG00000086441	ProperStrand	51	1	-13.0239
chr17	18170587	18170687	LINE	Lx2	L1	chr17Lx218170052	NonProperStrand	1	chr17	17746151	17746241	protein_coding	Lnpep	intron	ENSMUSG00000023845	NonProperStrand	2	1	-inf
chrX	142935548	142935648	LINE	L1Md_F2	L1	chrXL1Md_F2142934631	ProperStrand	1	chr12	67663021	67663111	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr17	39847216	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	97008185	97008204	protein_coding	Flrt2	intron	ENSMUSG00000047414	ProperStrand	7	1	-3.6430
chr11	70949368	70949477	protein_coding	Nlrp1a	intron	ENSMUSG00000069830	ProperStrand	19	chr9	56223609	56223646	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-10.8261
chr9	123461875	123461907	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	70359721	70359847	protein_coding	4933404M02Rik	intron	ENSMUSG00000075302	ProperStrand	4	1	-6.3300
chr7	102441986	102442043	LINE	Lx4A	L1	chr7Lx4A102441216	NonProperStrand	4	chr17	35914731	35916293	lincRNA	4833427F10Rik	intron	ENSMUSG00000092171	ProperStrand	2	1	-20.9262
chr4	139400393	139401292	Simple_repeat	(TCC)n	Simple_repeat	chr4(TCC)n139400401	ProperStrand	1	chr9	113969433	113969520	protein_coding	Susd5	intron	ENSMUSG00000086596	ProperStrand	51	1	-inf
chr17	39846664	39846705	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	152399316	152399384	protein_coding	Defb21	intron	ENSMUSG00000056544	ProperStrand	2	1	-5.3533
chr4	33390273	33390324	Other	RMER1B	Other	chr4RMER1B33390008	ProperStrand	1	chr9	123461906	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	4877084	4877123	protein_coding-noncoding	Mfsd2b	utr3	ENSMUSG00000037336	ProperStrand	2	chr17	25093979	25094047	protein_coding	Hn1l	intron	ENSMUSG00000024165	NonProperStrand	6	1	-inf
chr17	63356344	63356430	LINE	L2	L2	chr17L263356355	ProperStrand	1	chr7	127197944	127198000	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	147	1	-inf
chrX	8144621	8144964	LINE	L1Md_F2	L1	chrXL1Md_F28144136	ProperStrand	10	chr6	124715344	124715402	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	1	-13.9587
chr15	98853798	98854080	SINE	B1_Mur3	Alu	chr15B1_Mur398854035	NonProperStrand	2	chr15	98853604	98853704	SINE	B3	B2	chr15B398853555	NonProperStrand	2	2	-inf
chr3	41604770	41605074	LINE	L1Md_F2	L1	chr3L1Md_F241604745	ProperStrand	11	chr17	39846450	39846837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-3.3422
chr13	98246930	98246979	lincRNA	Gm11019	intron	ENSMUSG00000078952	NonProperStrand	14	chr17	36975056	36975122	protein_coding	Trim26	intron	ENSMUSG00000024457	NonProperStrand	28	1	-16.5068
chr9	88466008	88466108	SINE	B2_Mm1t	B2	chr9B2_Mm1t88465993	NonProperStrand	1	chr9	88466300	88466390	SINE	B2_Mm1t	B2	chr9B2_Mm1t88466316	NonProperStrand	1	1	-inf
chr17	39846523	39846555	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	35023156	35023219	lincRNA	Gm12758	exon	ENSMUSG00000085105	ProperStrand	5	1	-3.1907
chr17	39846818	39846839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	44396303	44396331	SINE	RSINE1	B4	chr19RSINE144396175	NonProperStrand	1	1	-inf
chr9	123461884	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr15	4368028	4368047	protein_coding	Plcxd3	intron	ENSMUSG00000049148	ProperStrand	4	1	-6.3300
chr12	74568496	74568586	LINE	Lx6	L1	chr12Lx674568266	ProperStrand	1	chr12	74568663	74568763	LINE	Lx6	L1	chr12Lx674568684	ProperStrand	1	1	-inf
chr4	123665123	123665251	LTR	MER74B	ERVL	chr4MER74B123665128	NonProperStrand	4	chr4	123665002	123665139	SINE	B4	B4	chr4B4123664863	ProperStrand	3	3	-inf
chr17	39845519	39845604	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	mmu-miR-3473b	0	18	miRNA	mmu-miR-3473b	.	mmu-miR-3473b	ProperStrand	2	1	-9.3724
chr7	102185897	102185933	LINE	L1Md_T	L1	chr7L1Md_T102180883	ProperStrand	9	chr13	40900631	40900732	LTR	ORR1C1-int	MaLR	chr13ORR1C1-int40899998	ProperStrand	4	1	-inf
chr17	39847207	39847268	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	26921454	26921525	protein_coding	Tmem8c	intron	ENSMUSG00000009214	ProperStrand	5	1	-4.3348
chr4	125509023	125509113	SINE	PB1D10	Alu	chr4PB1D10125508991	NonProperStrand	3	chr4	125509127	125509227	SINE	RSINE1	B4	chr4RSINE1125509153	ProperStrand	3	3	-inf
chr8	78633812	78633893	LINE	Lx3_Mus	L1	chr8Lx3_Mus78632960	NonProperStrand	2	chr16	35981616	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-17.3408
chr15	81150432	81150522	protein_coding	Slc25a17	intron	ENSMUSG00000022404	ProperStrand	110	chr8	29985501	29985601	protein_coding	Unc5d	intron	ENSMUSG00000063626	ProperStrand	5	1	-15.9761
chr11	98714463	98715662	SINE	RSINE1	B4	chr11RSINE198714972	NonProperStrand	3	chr11	98714041	98714423	protein_coding	Rapgefl1	utr3	ENSMUSG00000038020	NonProperStrand	28	3	-inf
chr5	146413968	146414068	LTR	RLTR45-int	ERVK	chr5RLTR45-int146413954	ProperStrand	1	chr5	146413851	146413941	LTR	RLTR45	ERVK	chr5RLTR45146413451	ProperStrand	1	1	-inf
chr1	170710998	170711088	LINE	L1Md_F2	L1	chr1L1Md_F2170710791	NonProperStrand	1	chr1	170710867	170710967	LINE	L1Md_F2	L1	chr1L1Md_F2170710791	ProperStrand	1	1	-inf
chr5	123769641	123769702	protein_coding	Wdr66	intron	ENSMUSG00000029442	ProperStrand	17	chr6	47788067	47788157	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	1	-15.3672
chr15	47539995	47540118	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr16	35981617	35981639	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-8.0277
chr18	80097244	80097291	Simple_repeat	(GGGAGA)n	Simple_repeat	chr18(GGGAGA)n80097251	ProperStrand	2	chr1	89582399	89582502	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	2	-inf
chr11	109012009	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr2	130712451	130712498	processed_transcript	A730017L22Rik	.	ENSMUSG00000085566	ProperStrand	13	1	-15.4027
chr17	39847440	39847596	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	16647980	16657040	protein_coding	Tmem70	intron	ENSMUSG00000025940	NonProperStrand	8	2	-4.3369
chr11	20208628	20208731	protein_coding	Slc1a4	intron	ENSMUSG00000020142	NonProperStrand	34	chr13	35866299	35866336	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-9.6414
chr17	39846748	39847826	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	108356537	108360193	LTR	RMER10A	ERVL	chr9RMER10A108359943	ProperStrand	2	2	-inf
chr15	47539994	47540118	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-4.7567
chrX	5436600	5436620	Simple_repeat	(CAGA)n	Simple_repeat	chrX(CAGA)n5436565	ProperStrand	1	chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr10	67196696	67196786	LINE	L1ME1	L1	chr10L1ME167196577	ProperStrand	2	chr10	67196851	67196951	LINE	L1ME1	L1	chr10L1ME167196817	ProperStrand	2	2	-inf
chr14	123479547	123479564	Other	RMER1C	Other	chr14RMER1C123478594	NonProperStrand	1	chr19	37215618	37215692	protein_coding	Cpeb3	intron	ENSMUSG00000039652	NonProperStrand	28	1	-inf
chr10	40258540	40258633	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr15	99789473	99789573	protein_coding	1700030F18Rik	intron	ENSMUSG00000045350	ProperStrand	53	2	-9.1580
chr4	117998019	117998078	SINE	B3	B2	chr4B3117997918	NonProperStrand	1	chr4	118000227	118000299	Simple_repeat	(CATA)n	Simple_repeat	chr4(CATA)n118000242	NonProperStrand	1	1	-inf
chr13	97190575	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	156868549	156868646	protein_coding	9830001H06Rik	intron	ENSMUSG00000055485	NonProperStrand	51	1	-5.4390
chr4	109017857	109018962	protein_coding	Eps15	intron	ENSMUSG00000028552	ProperStrand	34	chr4	109141967	109142036	protein_coding	Rnf11	intron	ENSMUSG00000028557	ProperStrand	20	1	-15.4106
chr17	39846461	39846489	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	92256897	92256915	protein_coding	Cry2	intron	ENSMUSG00000068742	ProperStrand	3	1	-4.3017
chr11	109012019	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr2	5379296	5379333	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.7867
chr10	40258543	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr2	41296116	41296132	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-5.4568
chr13	5868539	5868625	protein_coding	Klf6	utr3	ENSMUSG00000000078	ProperStrand	7	chr16	18533187	18533263	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	1	-17.6818
chr14	65824915	65826544	protein_coding	Fzd3	intron	ENSMUSG00000007989	ProperStrand	21	chr13	44869576	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.5559
chr3	88799907	88800007	protein_coding	Ash1l	intron	ENSMUSG00000028053	ProperStrand	44	chr19	33244214	33244304	protein_coding	Rnls	intron	ENSMUSG00000071573	ProperStrand	11	1	-16.1311
chr3	110098913	110099013	LINE	L1MA6	L1	chr3L1MA6110098559	ProperStrand	1	chr3	110099225	110099315	LTR	MTE2b	MaLR	chr3MTE2b110099211	NonProperStrand	1	1	-inf
chr7	19730069	19730118	protein_coding	Qpctl	intron	ENSMUSG00000030407	ProperStrand	8	chr7	19719492	19721420	protein_coding	Fbxo46	exon	ENSMUSG00000050428	NonProperStrand	48	1	-16.6160
chrX	99290610	99290627	LTR	LTR16A	ERVL	chrXLTR16A99290603	NonProperStrand	1	chr6	112881143	112881252	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	95	1	-inf
chr13	18728194	18728269	LINE	Lx9	L1	chr13Lx918727263	ProperStrand	2	chr9	123461965	123462031	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chrX	12801863	12801894	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr6	128184517	128184578	protein_coding	Tead4	intron	ENSMUSG00000030353	ProperStrand	34	1	-13.4598
chr11	109011643	109011704	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	117202572	117202643	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	1	-7.7685
chr11	8594433	8594521	LTR	RLTR23	ERV1	chr11RLTR238594198	NonProperStrand	1	chr17	39846870	39846933	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	4082179	4082279	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr2	86842723	86842813	protein_coding	Olfr1102	exon	ENSMUSG00000049843	ProperStrand	2	1	-15.1159
chr15	76792096	76792187	LTR	RNLTR23	ERVK	chr15RNLTR2376792099	NonProperStrand	2	chr17	39847656	39847698	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr3	11086330	11086420	LTR	RodERV21-int	ERV1	chr3RodERV21-int11086079	NonProperStrand	1	chr3	11086440	11086540	LTR	RodERV21-int	ERV1	chr3RodERV21-int11086336	NonProperStrand	1	1	-inf
chr17	56027767	56027867	LTR	MYSERV6-int	ERVK	chr17MYSERV6-int56027537	ProperStrand	4	chr17	56028234	56028278	Simple_repeat	(GAA)n	Simple_repeat	chr17(GAA)n56027971	NonProperStrand	2	2	-inf
chr10	79004397	79004487	protein_coding	Mier2	exon	ENSMUSG00000042570	ProperStrand	2	chr7	103550736	103550836	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-19.9531
chr17	47574923	47574956	protein_coding	AI661453	intron	ENSMUSG00000034382	ProperStrand	36	chr17	47572456	47572511	protein_coding	1700001C19Rik	intron	ENSMUSG00000047150	NonProperStrand	4	1	-19.0994
chr14	19278159	19278191	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr15	78953581	78953642	protein_coding	Micall1	intron	ENSMUSG00000033039	ProperStrand	49	1	-11.9554
chr12	24891786	24891859	LTR	IAPLTR3-int	ERVK	chr12IAPLTR3-int24891542	ProperStrand	2	chr9	123461854	123461927	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847129	39847173	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	99017375	99017462	SINE	B4A	B4	chr11B4A99017351	ProperStrand	1	1	-inf
chr5	146261173	146261199	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	66278802	66278818	protein_coding	Rhoh	intron	ENSMUSG00000029204	ProperStrand	1	1	-inf
chr10	80780219	80780251	protein_coding	Pip5k1c	intron	ENSMUSG00000034902	ProperStrand	107	chr13	97190561	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.0167
chr17	39846453	39846550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	69634561	69634611	SINE	B2_Mm1a	B2	chr13B2_Mm1a69634530	ProperStrand	1	1	-inf
chr7	4489746	4489846	SINE	B1_Mur3	Alu	chr7B1_Mur34489703	ProperStrand	3	chr7	4497220	4497310	protein_coding	Syt5	exon	ENSMUSG00000004961	ProperStrand	9	3	-inf
chr17	39848140	39848166	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	173033864	173033941	protein_coding	Zbp1	intron	ENSMUSG00000027514	NonProperStrand	25	2	-5.1643
chr2	180739924	180739947	protein_coding	Col20a1	intron	ENSMUSG00000016356	ProperStrand	42	chr4	83473042	83474325	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	NonProperStrand	185	1	-10.4826
chr8	22068042	22068142	LTR	MuLV-int	ERV1	chr8MuLV-int22068006	NonProperStrand	4	chr8	22067922	22068012	LTR	RLTR17	ERVK	chr8RLTR1722067337	ProperStrand	2	2	-inf
chr12	59040425	59040495	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr2	22744838	22744918	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-4.8654
chr17	39847736	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	77005518	77005553	Simple_repeat	(TC)n	Simple_repeat	chr3(TC)n77005469	ProperStrand	1	1	-inf
chr5	134943003	134943112	SINE	B3A	B2	chr5B3A134942906	ProperStrand	1	chr5	134943471	134943494	Simple_repeat	(C)n	Simple_repeat	chr5(C)n134943447	NonProperStrand	1	1	-inf
chr13	31873419	31873478	DNA	MER82	MER2_type	chr13MER8231873151	ProperStrand	1	chr2	132745472	132745522	protein_coding	Fermt1	intron	ENSMUSG00000027356	NonProperStrand	15	1	-inf
chr11	109011798	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	139944224	139944284	protein_coding	Fam53b	intron	ENSMUSG00000030956	NonProperStrand	73	1	-5.7143
chr17	39843706	39843777	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	32357583	32357644	protein_coding	Brd4	intron	ENSMUSG00000024002	ProperStrand	47	1	-3.4226
chr4	139283089	139283179	SINE	B1_Mur4	Alu	chr4B1_Mur4139283008	NonProperStrand	5	chr4	139283245	139283345	SINE	B3	B2	chr4B3139283192	ProperStrand	3	3	-inf
chr17	39847804	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	66602128	66602167	LTR	RMER17C-int	ERVK	chr5RMER17C-int66601645	NonProperStrand	1	1	-inf
chr7	108803691	108803781	LTR	RLTR14	ERV1	chr7RLTR14108803589	ProperStrand	1	chr7	108803897	108803997	LTR	RLTR14	ERV1	chr7RLTR14108803825	ProperStrand	1	1	-inf
chr12	38507269	38507369	LINE	L1Md_A	L1	chr12L1Md_A38504772	NonProperStrand	1	chr11	36931760	36931850	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-inf
chr4	118326364	118326454	LINE	L1M2	L1	chr4L1M2118326273	NonProperStrand	1	chr4	118326517	118326617	LTR	MT2_Mm	ERVL	chr4MT2_Mm118326538	NonProperStrand	1	1	-inf
chr17	39848026	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	87938784	87938802	LTR	MTEb-int	MaLR	chr1MTEb-int87938174	ProperStrand	1	1	-inf
chr2	35674728	35678715	antisense	9030204H09Rik	.	ENSMUSG00000086449	ProperStrand	84	chr2	35653370	35698398	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	17	-inf
chr5	33505089	33505159	protein_coding	Slc5a1	utr3	ENSMUSG00000011034	NonProperStrand	541	chr9	40807645	40807732	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-3.2101
chr6	3201470	3201557	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	75910251	75910267	protein_coding	Puf60	intron	ENSMUSG00000002524	ProperStrand	31	1	-4.1133
chr17	39848098	39848144	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	135453592	135453628	protein_coding	Cnr2	intron	ENSMUSG00000062585	NonProperStrand	13	1	-4.1930
chr15	59510571	59510627	LINE	L1MB5	L1	chr15L1MB559510569	NonProperStrand	1	chr15	59510523	59510573	SINE	ID_B1	B4	chr15ID_B159510356	NonProperStrand	1	1	-inf
chr14	18269276	18270322	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	56	chr14	18269153	18269949	LTR	ORR1A1	MaLR	chr14ORR1A118268996	NonProperStrand	26	13	-inf
chr16	44156543	44157160	protein_coding	Naa50	intron	ENSMUSG00000022698	ProperStrand	41	chr5	89627073	89627173	protein_coding	Slc4a4	intron	ENSMUSG00000060961	ProperStrand	12	1	-16.1048
chr17	39847659	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	97703892	97703933	protein_coding	B230217C12Rik	utr3	ENSMUSG00000089676	ProperStrand	2	1	-5.4040
chr1	131056426	131056455	LINE	Lx5	L1	chr1Lx5131055724	NonProperStrand	2	chr17	39847763	39847847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	70963673	70963760	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	167454124	167454164	protein_coding	Ube2v1	intron	ENSMUSG00000078923	NonProperStrand	62	1	-6.1428
chr17	70963689	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	180195621	180195695	protein_coding	Slco4a1	utr5	ENSMUSG00000038963	NonProperStrand	161	1	-4.2954
chr2	39072829	39072919	protein_coding	Ppp6c	intron	ENSMUSG00000026753	ProperStrand	8	chr2	39072568	39072668	pseudogene	Gm13511	.	ENSMUSG00000083157	ProperStrand	1	1	-inf
chr7	120928501	120930976	protein_coding	Spon1	intron	ENSMUSG00000038156	ProperStrand	96	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.2211
chr7	120868112	120868172	LTR	MLT1F1	MaLR	chr7MLT1F1120867779	ProperStrand	1	chr9	118674949	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr17	45600483	45600501	protein_coding	Spats1	intron	ENSMUSG00000023935	ProperStrand	92	chr2	5379342	5379370	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.7414
chr4	151970948	151971038	LTR	MTEa	MaLR	chr4MTEa151970896	NonProperStrand	1	chr4	151971033	151971133	Low_complexity	GA-rich	Low_complexity	chr4GA-rich151971025	ProperStrand	1	1	-inf
chr7	35409165	35409255	LINE	L2a	L2	chr7L2a35409154	ProperStrand	1	chr7	35409348	35409448	LTR	LTR16C	ERVL	chr7LTR16C35409348	NonProperStrand	1	1	-inf
chr8	107096424	107096441	Simple_repeat	(GAA)n	Simple_repeat	chr8(GAA)n107096251	NonProperStrand	18	chrX	130448674	130448737	protein_coding	Srpx2	intron	ENSMUSG00000031253	ProperStrand	4	1	-20.0512
chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	chr1	52915766	52915794	protein_coding	Hibch	intron	ENSMUSG00000041426	ProperStrand	10	1	-15.8547
chr6	142480713	142480794	Simple_repeat	(TGG)n	Simple_repeat	chr6(TGG)n142480667	NonProperStrand	1	chr1	5127148	5127198	protein_coding	Atp6v1h	intron	ENSMUSG00000033793	ProperStrand	26	1	-inf
chr2	91772343	91772727	protein_coding	Mdk	utr5	ENSMUSG00000027239	NonProperStrand	8	chr2	91768988	91770920	protein_coding	Chrm4	utr3	ENSMUSG00000040495	ProperStrand	12	2	-inf
chr13	3338241	3338331	LTR	RLTR10A	ERVK	chr13RLTR10A3338015	ProperStrand	1	chr13	3337855	3337955	SINE	B1_Mm	Alu	chr13B1_Mm3337869	ProperStrand	1	1	-inf
chr17	39847553	39847795	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	119174113	119185015	protein_coding	Usp47	intron	ENSMUSG00000059263	NonProperStrand	10	3	-5.7899
chr4	150307089	150307205	protein_coding	Tnfrsf9	intron	ENSMUSG00000028965	ProperStrand	158	chr7	98353125	98359369	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-5.5173
chr10	108337458	108337540	protein_coding-noncoding	Syt1	utr3	ENSMUSG00000035864	NonProperStrand	7	chr9	123461865	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr15	99498748	99498764	SINE	B2_Mm1a	B2	chr15B2_Mm1a99498607	NonProperStrand	8	chr7	51114898	51114921	SINE	B3	B2	chr7B351114850	NonProperStrand	1	1	-inf
chr17	34952011	34952076	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr11	69405071	69405126	protein_coding	Trp53	utr3	ENSMUSG00000059552	NonProperStrand	12	2	-inf
chr7	47188542	47188632	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chrX	80738397	80738497	protein_coding	Dmd	intron	ENSMUSG00000045103	ProperStrand	47	1	-12.0928
chr17	24944007	24944080	protein_coding	4930528F23Rik	intron	ENSMUSG00000024155	NonProperStrand	27	chr3	96559099	96559147	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	1	-13.1105
chr17	26690911	26690975	LTR	ORR1D1-int	MaLR	chr17ORR1D1-int26690925	NonProperStrand	1	chr5	33521707	33521731	LTR	RMER19B	ERVK	chr5RMER19B33521324	ProperStrand	29	1	-inf
chr18	12986387	12988308	protein_coding	Osbpl1a	intron	ENSMUSG00000044252	NonProperStrand	72	chr2	177494223	177494347	protein_coding	Gm14322	intron	ENSMUSG00000078864	ProperStrand	5	1	-16.8033
chr19	30158586	30174460	protein_coding	Uhrf2	intron	ENSMUSG00000024817	NonProperStrand	92	chr19	30174466	30175067	protein_coding	Gldc	intron	ENSMUSG00000024827	ProperStrand	40	10	-inf
chr10	127792481	127792528	protein_coding	Cs	intron	ENSMUSG00000005683	NonProperStrand	1	chr6	17671043	17671125	protein_coding	St7	intron	ENSMUSG00000029534	ProperStrand	40	1	-inf
chr1	190847724	190847837	LINE	L1M3	L1	chr1L1M3190847675	NonProperStrand	1	chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	66429760	66429805	LINE	Lx2B	L1	chr13Lx2B66429442	NonProperStrand	1	chr13	65650437	65650538	Unknown	MurSatRep1	Unknown	chr13MurSatRep165649389	NonProperStrand	1	1	-inf
chr10	4026281	4026389	LINE	Lx8	L1	chr10Lx84025978	ProperStrand	2	chr17	39846721	39846750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	144825922	144826536	LINE	Lx5	L1	chr5Lx5144825874	NonProperStrand	4	chr5	144826553	144826653	SINE	B1_Mus2	Alu	chr5B1_Mus2144826539	NonProperStrand	4	4	-inf
chr16	35981698	35981763	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr14	122158695	122158737	protein_coding	Dock9	intron	ENSMUSG00000025558	NonProperStrand	173	1	-8.0002
chr16	19922248	19922338	LINE	Lx6	L1	chr16Lx619922119	ProperStrand	1	chr16	19922516	19922616	LINE	Lx6	L1	chr16Lx619922468	ProperStrand	1	1	-inf
chr5	136370169	136370233	SINE	B1_Mus1	Alu	chr5B1_Mus1136370183	NonProperStrand	1	chr9	123461802	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	21489934	21489999	LTR	RLTR11A2	ERVK	chr14RLTR11A221489848	NonProperStrand	3	chr14	21489640	21489726	SINE	B2_Mm1t	B2	chr14B2_Mm1t21489522	ProperStrand	2	1	-20.2824
chr12	3544060	3544150	LINE	L1M4	L1	chr12L1M43544025	NonProperStrand	1	chr12	3544219	3544319	LTR	RLTR1B	ERV1	chr12RLTR1B3544226	NonProperStrand	1	1	-inf
chr1	17241298	17241398	LINE	Lx9	L1	chr1Lx917241301	NonProperStrand	1	chr1	17241178	17241268	LTR	RLTR9E	ERVK	chr1RLTR9E17240886	ProperStrand	1	1	-inf
chr17	39843490	39843579	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr12	76027823	76027839	protein_coding	Kcnh5	intron	ENSMUSG00000034402	ProperStrand	12	1	-5.6158
chr1	180805224	180805357	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	62	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-9.8790
chr5	146260993	146261042	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	115727286	115727325	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	1	-3.2764
chr12	116677317	116677407	LINE	L1Md_F2	L1	chr12L1Md_F2116672135	ProperStrand	1	chr12	116677535	116677635	LINE	L1Md_F2	L1	chr12L1Md_F2116677425	ProperStrand	1	1	-inf
chr11	62604512	62604584	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr17	24528533	24528554	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	24	1	-14.7027
chr17	39848555	39848664	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr16	91270379	91270396	protein_coding	Olig1	exon	ENSMUSG00000046160	NonProperStrand	4	1	-6.9461
chr13	112485646	112485707	protein_coding	Mier3	intron	ENSMUSG00000032727	ProperStrand	63	chr14	75984699	75984750	protein_coding	Spert	intron	ENSMUSG00000034913	ProperStrand	11	1	-15.4053
chr3	36263965	36264065	LINE	L1M5	L1	chr3L1M536263825	NonProperStrand	1	chr3	36264140	36264230	LTR	MTB_Mm	MaLR	chr3MTB_Mm36264123	ProperStrand	1	1	-inf
chr7	19748946	19749004	protein_coding	Gipr	intron	ENSMUSG00000030406	ProperStrand	6	chr7	19731936	19731993	protein_coding	Qpctl	intron	ENSMUSG00000030407	ProperStrand	8	1	-inf
chr17	39843020	39843049	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr16	30315825	30315912	protein_coding	Atp13a3	exon	ENSMUSG00000022533	ProperStrand	59	1	-5.4189
chr12	106358139	106358229	LINE	Lx4A	L1	chr12Lx4A106357685	NonProperStrand	1	chr12	106358745	106358845	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int106358682	ProperStrand	1	1	-inf
chr11	88637580	88637645	DNA	RCHARR1	MER1_type	chr11RCHARR188637394	NonProperStrand	3	chr11	88636430	88636506	SINE	B4A	B4	chr11B4A88636202	ProperStrand	1	1	-inf
chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr9	119425565	119425663	protein_coding	Scn5a	intron	ENSMUSG00000032511	NonProperStrand	98	1	-10.8446
chr2	91501978	91505614	protein_coding	Arhgap1	intron	ENSMUSG00000027247	ProperStrand	8	chr1	181214739	181214839	protein_coding	Smyd3	intron	ENSMUSG00000055067	NonProperStrand	144	3	-20.1822
chr10	23785754	23785821	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr13	44800365	44800430	SINE	B2_Mm1t	B2	chr13B2_Mm1t44800301	ProperStrand	3	1	-16.4594
chr5	129560299	129560428	LTR	RMER17D	ERVK	chr5RMER17D129560291	NonProperStrand	3	chr6	119564998	119565017	protein_coding	Erc1	intron	ENSMUSG00000030172	ProperStrand	98	3	-inf
chr14	77530683	77530773	LINE	L1M3	L1	chr14L1M377530668	NonProperStrand	1	chr14	77530776	77530876	LINE	L1MB2	L1	chr14L1MB277530784	NonProperStrand	2	1	-inf
chr5	6930235	6930335	LINE	L1Md_A	L1	chr5L1Md_A6929747	ProperStrand	1	chr7	103550792	103550882	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr4	9500887	9500956	protein_coding	Asph	intron	ENSMUSG00000028207	ProperStrand	35	chr6	119961423	119961478	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	1	-12.8898
chr2	5379240	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr17	81838488	81838515	protein_coding	Slc8a1	intron	ENSMUSG00000054640	ProperStrand	8	1	-8.6062
chrX	103153106	103153196	SINE	B2_Mm2	B2	chrXB2_Mm2103153097	NonProperStrand	1	chrX	103153265	103153365	SINE	B3	B2	chrXB3103153276	NonProperStrand	1	1	-inf
chr17	39846430	39846451	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	77984304	77984403	protein_coding-noncoding	Nek8	utr3	ENSMUSG00000017405	NonProperStrand	4	1	-3.6552
chr17	39847028	39847809	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	191025221	191025250	SINE	B4	B4	chr1B4191025193	ProperStrand	1	1	-inf
chr5	115913303	115913393	LTR	RMER19B	ERVK	chr5RMER19B115913061	ProperStrand	2	chr5	115913458	115913558	SINE	B2_Mm1t	B2	chr5B2_Mm1t115913474	ProperStrand	1	1	-inf
chr10	37855311	37855411	LTR	RMER17C	ERVK	chr10RMER17C37855171	NonProperStrand	1	chr10	37855498	37855588	Simple_repeat	(TTCTC)n	Simple_repeat	chr10(TTCTC)n37855410	NonProperStrand	1	1	-inf
chr17	39846818	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	106206970	106207056	LTR	ORR1A4	MaLR	chr1ORR1A4106206874	NonProperStrand	1	1	-inf
chr17	39847460	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	111855504	111855523	protein_coding	Dync1h1	intron	ENSMUSG00000018707	ProperStrand	4	2	-6.7714
chr1	134617802	134617895	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-7.8304
chr17	39847765	39847843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	18500306	18500374	protein_coding	Gm16314	intron	ENSMUSG00000086965	ProperStrand	2	1	-5.4040
chr13	95873861	95873971	protein_coding	Pde8b	intron	ENSMUSG00000021684	ProperStrand	31	chr10	105238485	105238521	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-14.0351
chr5	30040935	30041025	LTR	ORR1C1	MaLR	chr5ORR1C130040939	NonProperStrand	3	chr5	30040786	30040886	LTR	RMER20A	ERVK	chr5RMER20A30040767	ProperStrand	3	3	-inf
chr9	86086896	86086996	LINE	L1Md_T	L1	chr9L1Md_T86086866	ProperStrand	1	chr11	40702549	40702638	LTR	MLT1C	MaLR	chr11MLT1C40702570	NonProperStrand	1	1	-inf
chr5	137530718	137530735	SINE	RSINE1	B4	chr5RSINE1137530696	ProperStrand	1	chr14	52232859	52235151	protein_coding	Gm5622	intron	ENSMUSG00000079244	NonProperStrand	57	1	-inf
chr11	54752154	54752229	protein_coding	Tnip1	intron	ENSMUSG00000020400	ProperStrand	67	chr13	94458395	94458447	protein_coding	Dmgdh	intron	ENSMUSG00000042102	ProperStrand	69	1	-11.5193
chr3	144720111	144720129	LINE	L1Md_T	L1	chr3L1Md_T144718500	NonProperStrand	1	chr17	56343759	56343891	protein_coding	Dpp9	intron	ENSMUSG00000001229	NonProperStrand	214	1	-inf
chr14	115041712	115041767	LTR	MLT2F	ERVL	chr14MLT2F115041715	ProperStrand	1	chr8	78506027	78506092	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	1	-inf
chr13	97491434	97491508	LINE	L1_Rod	L1	chr13L1_Rod97491394	NonProperStrand	4	chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	1	-17.9108
chr7	113279487	113279503	LINE	Lx5	L1	chr7Lx5113278089	NonProperStrand	8	chr17	39846660	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-4.2675
chr17	50920581	50920598	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	chr2	41344451	41344468	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-11.5720
chr13	112578183	112578241	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chrX	85155382	85155450	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	NonProperStrand	79	1	-3.6904
chr3	145608820	145608920	SINE	B1_Mus2	Alu	chr3B1_Mus2145608842	ProperStrand	1	chr3	145608676	145608766	SINE	B2_Mm2	B2	chr3B2_Mm2145608677	NonProperStrand	1	1	-inf
chr10	77059369	77059934	protein_coding	Pttg1ip	utr3	ENSMUSG00000009291	NonProperStrand	42	chr10	77069978	77071034	protein_coding	Sumo3	intron	ENSMUSG00000020265	NonProperStrand	91	1	-11.9051
chr17	39847200	39847323	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	65196569	65201817	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	7	-3.5057
chr10	9900617	9900633	Low_complexity	AT_rich	Low_complexity	chr10AT_rich9900615	ProperStrand	9	chr9	61264373	61264452	protein_coding	Tle3	intron	ENSMUSG00000032280	NonProperStrand	1	1	-inf
chr19	44803389	44803489	LTR	MLT1D	MaLR	chr19MLT1D44803275	NonProperStrand	1	chr19	44803743	44803833	SINE	B1_Mus2	Alu	chr19B1_Mus244803677	NonProperStrand	1	1	-inf
chr17	39845361	39845422	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr3	90220975	90220991	protein_coding	Ints3	intron	ENSMUSG00000027933	NonProperStrand	20	1	-4.2357
chr6	72762623	72762675	Simple_repeat	(TC)n	Simple_repeat	chr6(TC)n72762621	NonProperStrand	1	chr12	109725536	109725598	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-inf
chr14	65831176	65831192	protein_coding	Fzd3	intron	ENSMUSG00000007989	ProperStrand	21	chr9	109064095	109064124	protein_coding	Fbxw21	intron	ENSMUSG00000047237	ProperStrand	6	1	-19.3846
chr8	70678038	70678111	LINE	Lx9	L1	chr8Lx970678042	ProperStrand	21	chr8	70678626	70678701	SINE	B4A	B4	chr8B4A70678633	ProperStrand	1	1	-inf
chr10	79050974	79051015	LTR	MT2A	ERVL	chr10MT2A79050887	NonProperStrand	1	chr17	39847428	39847475	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr10	40847155	40847931	LTR	MT2B	ERVL	chr10MT2B40846708	ProperStrand	1	chr15	66637616	66637708	protein_coding	Tg	intron	ENSMUSG00000053469	ProperStrand	17	1	-inf
chr13	106895825	106895844	LINE	Lx	L1	chr13Lx106894133	ProperStrand	3	chr19	3872530	3872572	protein_coding	Chka	intron	ENSMUSG00000024843	ProperStrand	73	1	-18.1248
chr17	39842998	39843079	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr1	172134343	172134376	protein_coding	Uhmk1	intron	ENSMUSG00000026667	NonProperStrand	15	1	-8.1613
chr5	29765550	29765638	protein_coding	Nom1	intron	ENSMUSG00000001569	ProperStrand	79	chr2	131936111	131936148	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	1	-10.9160
chr7	118109177	118109982	protein_coding	Mrvi1	intron	ENSMUSG00000005611	ProperStrand	87	chr5	131004406	131004483	protein_coding	Caln1	intron	ENSMUSG00000060371	NonProperStrand	37	1	-12.2516
chr1	179470480	179470580	LINE	Lx6	L1	chr1Lx6179470162	NonProperStrand	1	chr1	179470628	179470718	LINE	Lx7	L1	chr1Lx7179470571	NonProperStrand	1	1	-inf
chr8	71714710	71714920	LINE	L1_Mus1	L1	chr8L1_Mus171714593	ProperStrand	1	chr8	71715555	71715758	SINE	B2_Mm2	B2	chr8B2_Mm271715654	ProperStrand	1	1	-inf
chr3	95171905	95171948	LTR	MERVL-int	ERVL	chr3MERVL-int95167994	ProperStrand	34	chr4	136339435	136339516	protein_coding	Ephb2	intron	ENSMUSG00000028664	NonProperStrand	64	1	-13.0406
chr10	23829407	23829497	LTR	MTA_Mm	MaLR	chr10MTA_Mm23829416	ProperStrand	1	chr6	15273820	15273920	protein_coding	Foxp2	intron	ENSMUSG00000029563	ProperStrand	17	1	-inf
chr13	70836095	70836195	LINE	Lx7	L1	chr13Lx770835853	NonProperStrand	1	chr13	70835783	70835873	LTR	RLTR31_Mur	ERVK	chr13RLTR31_Mur70835266	ProperStrand	1	1	-inf
chr9	102885713	102885813	SINE	PB1D10	Alu	chr9PB1D10102885715	NonProperStrand	1	chr9	102885537	102885627	Simple_repeat	(TTCC)n	Simple_repeat	chr9(TTCC)n102885543	ProperStrand	1	1	-inf
chr15	7185184	7185274	protein_coding	Egflam	intron	ENSMUSG00000042961	ProperStrand	8	chr11	85634359	85634459	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	2	-20.0892
chr17	39847244	39847334	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	6082455	6082555	protein_coding	Shroom4	intron	ENSMUSG00000068270	NonProperStrand	3	1	-5.4882
chr9	44405322	44406826	SINE	B3	B2	chr9B344405233	ProperStrand	1	chr9	70554662	70554719	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-inf
chr15	39267746	39267770	protein_coding	Rims2	intron	ENSMUSG00000037386	ProperStrand	43	chr13	44869597	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.1358
chr9	95502894	95502979	LTR	ORR1D2	MaLR	chr9ORR1D295502877	ProperStrand	2	chr7	126780247	126780296	protein_coding	Acsm1	intron	ENSMUSG00000033533	ProperStrand	43	2	-inf
chr1	58447909	58447999	SINE	B4A	B4	chr1B4A58447789	NonProperStrand	1	chr1	58448169	58448269	SINE	PB1D10	Alu	chr1PB1D1058448191	ProperStrand	1	1	-inf
chr4	132270177	132270213	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr15	83149706	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-9.1387
chr6	94192163	94192249	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr16	11376216	11376292	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	1	-5.9810
chr3	131635811	131635901	LTR	ORR1E-int	MaLR	chr3ORR1E-int131635643	NonProperStrand	2	chr3	131636008	131636108	LTR	ORR1E	MaLR	chr3ORR1E131635937	NonProperStrand	1	1	-inf
chr17	39846816	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	29654912	29655024	LTR	MTE2a	MaLR	chr2MTE2a29654933	NonProperStrand	1	1	-inf
chr5	27741721	27741738	protein_coding	Dpp6	intron	ENSMUSG00000061576	NonProperStrand	86	chr5	92056060	92056192	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	1	-8.6966
chr3	101601889	101601989	LTR	MTD	MaLR	chr3MTD101601833	NonProperStrand	1	chr3	101601990	101602080	LTR	MTD	MaLR	chr3MTD101601976	NonProperStrand	1	1	-inf
chr1	136416929	136417029	LTR	RMER4A	ERVK	chr1RMER4A136416903	NonProperStrand	1	chr9	123461957	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	82749245	82760111	SINE	B1_Mur1	Alu	chr6B1_Mur182749255	NonProperStrand	1	chr6	82760155	82760245	SINE	ID_B1	B4	chr6ID_B182760125	NonProperStrand	1	1	-inf
chr6	47778246	47778326	protein_coding	Zfp786	intron	ENSMUSG00000051499	ProperStrand	6	chr8	61270620	61270663	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-14.3922
chrX	73717525	73717542	LINE	Lx4A	L1	chrXLx4A73716724	ProperStrand	12	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-11.1226
chr4	144974340	144974430	Low_complexity	A-rich	Low_complexity	chr4A-rich144974349	NonProperStrand	2	chr4	144974233	144974333	SINE	B1_Mm	Alu	chr4B1_Mm144974209	NonProperStrand	2	2	-inf
chr3	22093236	22093277	protein_coding	Tbl1xr1	intron	ENSMUSG00000027630	ProperStrand	100	chr9	71483630	71483727	protein_coding	Cgnl1	intron	ENSMUSG00000032232	ProperStrand	38	1	-11.9181
chr12	21435138	21435222	LTR	ORR1D2	MaLR	chr12ORR1D221435155	ProperStrand	1	chr17	39846847	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr18	57546604	57546694	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	chr6	46895137	46895237	protein_coding	Cntnap2	intron	ENSMUSG00000039419	NonProperStrand	121	1	-12.9483
chr10	127183299	127183392	protein_coding	Zbtb39	utr3	ENSMUSG00000044617	NonProperStrand	19	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.4076
chr5	115619350	115619387	protein_coding	Cabp1	intron	ENSMUSG00000029544	NonProperStrand	56	chr9	7992820	7992899	protein_coding	Yap1	intron	ENSMUSG00000053110	ProperStrand	74	1	-11.7396
chr12	51889686	51891283	LINE	L1Md_F2	L1	chr12L1Md_F251890958	ProperStrand	2	chr12	51888963	51889648	LINE	L1Md_Gf	L1	chr12L1Md_Gf51885602	ProperStrand	12	2	-inf
chr4	116331710	116331800	LTR	RLTR12B	ERVK	chr4RLTR12B116331703	NonProperStrand	3	chr4	116331600	116331700	SINE	B1_Mm	Alu	chr4B1_Mm116331533	ProperStrand	3	3	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr9	110281300	110281330	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-5.8463
chr14	54898465	54898735	LTR	RLTR31_Mm	ERVK	chr14RLTR31_Mm54898346	ProperStrand	11	chr14	54898758	54898877	LTR	RLTR9A	ERVK	chr14RLTR9A54898718	ProperStrand	6	5	-inf
chr12	110601467	110601527	LTR	MYSERV16_I-int	ERVK	chr12MYSERV16_I-int110600900	ProperStrand	9	chr17	39847272	39847342	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.1539
chr18	30293643	30294345	LINE	L1_Rod	L1	chr18L1_Rod30293611	ProperStrand	3	chr18	30294355	30298599	LINE	L1_Rod	L1	chr18L1_Rod30294177	ProperStrand	2	2	-inf
chr5	124368679	124368714	protein_coding	Denr	intron	ENSMUSG00000023106	NonProperStrand	29	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.9107
chr9	123461821	123461856	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr14	70786022	70786047	protein_coding	Piwil2	intron	ENSMUSG00000033644	NonProperStrand	3	1	-7.0114
chr8	87489079	87489169	protein_coding-noncoding	Rnaseh2a	utr3	ENSMUSG00000052926	NonProperStrand	1	chr8	87489264	87489366	protein_coding	Rnaseh2a	intron	ENSMUSG00000052926	NonProperStrand	82	1	-inf
chr8	31725388	31725488	LTR	LTR37A	ERV1	chr8LTR37A31725368	NonProperStrand	1	chr16	29297236	29297326	protein_coding	Atp13a5	intron	ENSMUSG00000048939	ProperStrand	4	1	-inf
chr13	55027941	55027968	LTR	MTD	MaLR	chr13MTD55027644	NonProperStrand	1	chr13	55028307	55028395	antisense	4930526F13Rik	.	ENSMUSG00000087335	ProperStrand	1	1	-inf
chr9	50804625	50804657	protein_coding	Sik2	intron	ENSMUSG00000037112	NonProperStrand	15	chr7	24870103	24872515	protein_coding	Zfp180	intron	ENSMUSG00000057101	ProperStrand	154	1	-12.9518
chr5	136374813	136374903	SINE	ID_B1	B4	chr5ID_B1136374740	ProperStrand	3	chr5	136374634	136374734	Simple_repeat	(TAGA)n	Simple_repeat	chr5(TAGA)n136374654	NonProperStrand	3	3	-inf
chr17	39847177	39847220	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	37711247	37711280	protein_coding	Gcap14	intron	ENSMUSG00000058690	NonProperStrand	5	1	-4.3348
chr7	4141078	4144215	LINE	L1Md_T	L1	chr7L1Md_T4137819	NonProperStrand	40	chr9	123461957	123462178	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.4283
chr10	86348625	86348647	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	81	chr10	86294951	86295059	protein_coding	Nt5dc3	intron	ENSMUSG00000054027	NonProperStrand	11	1	-14.8890
chr1	49716064	49716154	LINE	Lx4A	L1	chr1Lx4A49715889	ProperStrand	1	chr1	49716388	49716488	LINE	Lx4A	L1	chr1Lx4A49716317	ProperStrand	1	1	-inf
chr7	104222448	104222548	LINE	Lx3_Mus	L1	chr7Lx3_Mus104221966	ProperStrand	6	chr7	109521622	109521712	protein_coding	Stim1	intron	ENSMUSG00000030987	NonProperStrand	49	1	-17.2922
chr10	81182204	81182342	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	chr11	115644259	115644280	protein_coding	2310067B10Rik	intron	ENSMUSG00000020747	NonProperStrand	47	1	-10.3441
chr17	39847156	39847184	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	91113397	91113414	protein_coding	Arfgap2	intron	ENSMUSG00000027255	NonProperStrand	1	1	-inf
chr6	125221169	125221185	LTR	MTD	MaLR	chr6MTD125220922	ProperStrand	1	chr2	122028885	122028905	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	1	-inf
chr15	35745745	35770465	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.1381
chr11	109011732	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr18	74217464	74217564	protein_coding	Mapk4	intron	ENSMUSG00000024558	NonProperStrand	22	1	-8.1069
chr15	9923237	9923337	LINE	L1Md_A	L1	chr15L1Md_A9921481	NonProperStrand	1	chr15	9936242	9936332	LINE	L1Md_F2	L1	chr15L1Md_F29934793	NonProperStrand	1	1	-inf
chr12	108574121	108574155	LTR	ORR1B1	MaLR	chr12ORR1B1108574094	ProperStrand	1	chr17	39847675	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	34950765	34951902	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr18	61724926	61725016	protein_coding	Csnk1a1	intron	ENSMUSG00000024576	NonProperStrand	46	1	-11.1660
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr7	26479281	26479359	protein_coding	Tgfb1	exon	ENSMUSG00000002603	ProperStrand	9	1	-13.6981
chr8	72320125	72320165	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	chr13	97190594	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.2220
chr7	92910204	92910287	LINE	L1Md_A	L1	chr7L1Md_A92908432	ProperStrand	2	chr7	92910303	92917729	LINE	L1Md_T	L1	chr7L1Md_T92915006	NonProperStrand	1	1	-inf
chr18	41705713	41705730	LTR	RLTR11A	ERVK	chr18RLTR11A41705672	ProperStrand	3	chr8	84102171	84102300	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	3	-inf
chr5	100362115	100362146	LINE	Lx7	L1	chr5Lx7100361594	ProperStrand	5	chr6	3201455	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-7.8442
chr10	116926000	116926048	LTR	MMERVK10C-int	ERVK	chr10MMERVK10C-int116922261	ProperStrand	1	chr2	52589835	52589853	protein_coding	Stam2	intron	ENSMUSG00000055371	NonProperStrand	2	1	-inf
chr10	76779522	76788364	protein_coding-noncoding	Adarb1	utr3	ENSMUSG00000020262	ProperStrand	18	chr10	76776186	76789193	protein_coding	Adarb1	intron	ENSMUSG00000020262	ProperStrand	178	6	-inf
chr17	39846352	39847118	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	80074547	80082920	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	46	-6.7143
chr13	49504353	49504412	LTR	RMER13A	ERVK	chr13RMER13A49504268	ProperStrand	1	chr4	126178200	126178250	protein_coding	Eif2c4	intron	ENSMUSG00000042500	ProperStrand	92	1	-inf
chr9	44619560	44619621	protein_coding	Mll1	intron	ENSMUSG00000002028	NonProperStrand	44	chr16	10657190	10657281	protein_coding	Clec16a	intron	ENSMUSG00000068663	ProperStrand	211	1	-10.1257
chr18	33795221	33795295	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	29	chr9	21654052	21654114	protein_coding	Dock6	intron	ENSMUSG00000032198	NonProperStrand	39	1	-14.3651
chr3	138754455	138754555	SINE	B4A	B4	chr3B4A138754397	ProperStrand	1	chr9	15314842	15314932	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-inf
chr15	81399645	81399745	SINE	B1_Mus1	Alu	chr15B1_Mus181399598	NonProperStrand	8	chr15	81400047	81400137	SINE	ID4_	ID	chr15ID4_81400033	ProperStrand	1	1	-inf
chr7	101824519	101825977	LINE	L1Md_F2	L1	chr7L1Md_F2101820937	NonProperStrand	30	chr16	23111355	23111403	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-11.3098
chr17	50420127	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-6.6765
chr10	39679303	39679359	protein_coding	BC021785	utr3	ENSMUSG00000038528	NonProperStrand	2	chr10	39677411	39677477	protein_coding	G630090E17Rik	intron	ENSMUSG00000071335	NonProperStrand	8	1	-23.4058
chr17	39848099	39848159	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr17	34601821	34601985	LTR	MTA_Mm-int	MaLR	chr17MTA_Mm-int34601124	ProperStrand	2	1	-8.4422
chr1	161035399	161035457	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chrX	87238369	87238417	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	1	-9.8899
chr6	129544028	129544072	protein_coding	Klrd1	intron	ENSMUSG00000030165	ProperStrand	9	chr13	44869614	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.2984
chr17	39846450	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	71759713	71759777	LTR	ORR1B1-int	MaLR	chr8ORR1B1-int71758520	NonProperStrand	1	1	-inf
chr14	20077337	20077466	LTR	MLT1A0	MaLR	chr14MLT1A020077183	NonProperStrand	1	chr6	3201508	3201533	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr4	123581741	123581794	lincRNA	Gm17408	intron	ENSMUSG00000091927	ProperStrand	8	chr4	123582146	123582240	protein_coding	Mycbp	utr5	ENSMUSG00000028647	NonProperStrand	1	1	-inf
chr2	143938687	143938787	LTR	MTE2a	MaLR	chr2MTE2a143938697	ProperStrand	1	chr2	143938583	143938673	LTR	MTEa	MaLR	chr2MTEa143938533	ProperStrand	3	1	-inf
chr13	21715893	21715973	LINE	Lx7	L1	chr13Lx721715740	NonProperStrand	14	chr11	113160360	113160430	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	1	-11.9397
chrX	151922358	151922443	LINE	L1MA4A	L1	chrXL1MA4A151922104	NonProperStrand	5	chr9	109078362	109078423	LTR	RMER16-int	ERVK	chr9RMER16-int109077612	ProperStrand	10	1	-22.6756
chr5	34287752	34287852	LINE	L1VL2	L1	chr5L1VL234286951	NonProperStrand	2	chr17	39847842	39847932	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr4	108780534	108780634	protein_coding-noncoding	Osbpl9	utr3	ENSMUSG00000028559	ProperStrand	2	chr4	108780679	108780769	protein_coding	Osbpl9	intron	ENSMUSG00000028559	ProperStrand	19	1	-20.1864
chr8	62344367	62344467	LINE	L1Md_F2	L1	chr8L1Md_F262339121	NonProperStrand	1	chr14	79861965	79862054	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	30	1	-inf
chr9	45573204	45573294	LTR	MT2B	ERVL	chr9MT2B45573225	ProperStrand	2	chr9	45573583	45573683	LTR	MT2B	ERVL	chr9MT2B45573509	ProperStrand	2	1	-19.8939
chr2	157185297	157185374	LTR	ORR1A2-int	MaLR	chr2ORR1A2-int157184835	NonProperStrand	1	chr19	8888626	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	1	-inf
chr13	49501260	49501350	LINE	L1MC2	L1	chr13L1MC249501222	ProperStrand	4	chr13	49501115	49501215	SINE	PB1D10	Alu	chr13PB1D1049501110	ProperStrand	4	4	-inf
chr2	117638495	117638595	LINE	L1Md_F2	L1	chr2L1Md_F2117638338	NonProperStrand	1	chr2	117638355	117638445	lincRNA	Gm13985	intron	ENSMUSG00000086203	NonProperStrand	1	1	-inf
chr4	80635617	80635707	LINE	Lx6	L1	chr4Lx680635363	NonProperStrand	1	chr4	80635913	80636013	LTR	ORR1E-int	MaLR	chr4ORR1E-int80635702	ProperStrand	1	1	-inf
chr7	123193318	123193424	LINE	HAL1	L1	chr7HAL1123193240	NonProperStrand	3	chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-8.0300
chr6	94621563	94621619	protein_coding	Lrig1	intron	ENSMUSG00000030029	ProperStrand	40	chr7	107522719	107522812	protein_coding	C2cd3	intron	ENSMUSG00000047248	ProperStrand	36	1	-13.8768
chr8	80823019	80823112	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr14	98484711	98484731	protein_coding	Dach1	intron	ENSMUSG00000055639	NonProperStrand	11	1	-10.7370
chr1	119589436	119589513	LINE	L1_Mm	L1	chr1L1_Mm119589139	NonProperStrand	1	chr9	64856889	64856963	protein_coding	Ptplad1	intron	ENSMUSG00000033629	NonProperStrand	5	1	-inf
chr9	97069139	97069257	LINE	L1MEe	L1	chr9L1MEe97069063	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr8	103130137	103130227	LINE	L1Md_F2	L1	chr8L1Md_F2103129005	ProperStrand	1	chr8	103130384	103130484	LINE	L1Md_F2	L1	chr8L1Md_F2103130243	ProperStrand	1	1	-inf
chr11	45852147	45883717	SINE	B4A	B4	chr11B4A45852011	ProperStrand	1	chr2	37998837	37998880	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	1	-inf
chr9	38848155	38848209	LINE	L1Md_T	L1	chr9L1Md_T38844096	ProperStrand	1	chr1	164454170	164454234	LTR	ORR1A2	MaLR	chr1ORR1A2164453932	ProperStrand	1	1	-inf
chr7	80363173	80363203	LINE	L1Md_T	L1	chr7L1Md_T80362880	NonProperStrand	1	chr17	39847345	39847379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	115606254	115606344	LINE	L1ME2z	L1	chr9L1ME2z115605296	ProperStrand	1	chr15	77866955	77867055	protein_coding	Cacng2	intron	ENSMUSG00000019146	NonProperStrand	7	1	-inf
chr1	182824639	182824729	protein_coding-noncoding	Lefty2	utr5	ENSMUSG00000066652	ProperStrand	1	chr1	182824805	182824905	protein_coding	Lefty2	exon	ENSMUSG00000066652	ProperStrand	1	1	-inf
chr9	58880754	58880771	protein_coding	Neo1	intron	ENSMUSG00000032340	NonProperStrand	25	chr6	113130170	113130225	protein_coding	Lhfpl4	intron	ENSMUSG00000042873	NonProperStrand	50	1	-14.1666
chrX	50697959	50698049	protein_coding-noncoding	Mospd1	utr3	ENSMUSG00000023074	NonProperStrand	3	chrX	50698133	50698233	protein_coding	Mospd1	utr3	ENSMUSG00000023074	NonProperStrand	3	3	-inf
chr12	12642252	12642352	SINE	MIRb	MIR	chr12MIRb12642275	ProperStrand	1	chr12	12642112	12642202	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n12642124	ProperStrand	1	1	-inf
chr8	107125757	107125857	LTR	RLTRETN_Mm	ERVK	chr8RLTRETN_Mm107125693	ProperStrand	1	chr8	107125862	107125952	protein_coding	Cdh16	utr3	ENSMUSG00000031881	ProperStrand	4	1	-inf
chr11	114475282	114475382	LINE	L1_Mus3	L1	chr11L1_Mus3114475297	ProperStrand	4	chr11	114475402	114475492	SINE	B4	B4	chr11B4114475428	NonProperStrand	4	4	-inf
chr14	103906463	103906553	LTR	MTE-int	MaLR	chr14MTE-int103906325	NonProperStrand	3	chr14	103906668	103906769	SINE	B1_Mur2	Alu	chr14B1_Mur2103906689	NonProperStrand	3	3	-inf
chr12	24835498	24835588	LINE	L1MD	L1	chr12L1MD24835436	ProperStrand	2	chr12	24835616	24835716	LTR	MT2A	ERVL	chr12MT2A24835580	ProperStrand	2	2	-inf
chr2	103766335	103766390	SINE	RSINE1	B4	chr2RSINE1103766243	NonProperStrand	2	chr18	67489479	67489550	lincRNA	B430212C06Rik	intron	ENSMUSG00000046415	ProperStrand	20	1	-20.4416
chr18	60778819	60778909	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	chr7	28352589	28352689	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	NonProperStrand	5	1	-15.2885
mmu-miR-6238	2	20	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	chr9	40208289	40208394	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	1	-10.1046
chr9	123462076	123462166	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	30981943	30982043	protein_coding	Fnbp1	intron	ENSMUSG00000075415	ProperStrand	27	3	-6.7450
chr10	4266388	4266422	LINE	L1_Mus3	L1	chr10L1_Mus34266383	ProperStrand	20	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-12.6826
chr17	23550263	23550302	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int23549476	ProperStrand	5	chr16	17242026	17242129	protein_coding	Hic2	intron	ENSMUSG00000050240	ProperStrand	111	1	-15.9547
chr1	194992769	194992859	protein_coding-noncoding	Irf6	utr5	ENSMUSG00000026638	NonProperStrand	1	chr1	194991914	194992014	protein_coding	Irf6	intron	ENSMUSG00000026638	NonProperStrand	1	1	-inf
chr6	126124877	126124967	LINE	L1ME2z	L1	chr6L1ME2z126124722	ProperStrand	1	chr6	126125296	126125396	LINE	L1MEg	L1	chr6L1MEg126125216	ProperStrand	1	1	-inf
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr17	57024013	57024139	protein_coding	1700061G19Rik	intron	ENSMUSG00000024209	NonProperStrand	83	1	-11.7374
chrX	130046248	130046338	LINE	Lx6	L1	chrXLx6130046151	ProperStrand	1	chrX	130046416	130046516	LINE	Lx6	L1	chrXLx6130046359	ProperStrand	1	1	-inf
chr4	21073888	21073988	LINE	L1Md_F2	L1	chr4L1Md_F221070237	NonProperStrand	2	chr10	83472777	83472867	LTR	MTE-int	MaLR	chr10MTE-int83472537	ProperStrand	5	2	-inf
chr4	98465024	98465107	antisense	A730085A09Rik	.	ENSMUSG00000085843	ProperStrand	2	chr9	72540442	72540515	protein_coding	Nedd4	intron	ENSMUSG00000032216	ProperStrand	32	1	-19.8685
chr17	39847659	39847754	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	69589728	69589787	protein_coding	Kctd8	intron	ENSMUSG00000037653	ProperStrand	11	2	-3.4077
chr8	95865762	95865863	LINE	L1Md_A	L1	chr8L1Md_A95865546	ProperStrand	3	chr8	95865363	95865453	LINE	Lx5	L1	chr8Lx595864721	ProperStrand	3	2	-20.2273
chr6	39329171	39329242	SINE	B3	B2	chr6B339329186	NonProperStrand	1	chr9	123461991	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	49501703	49501793	DNA	URR1B	MER1_type	chr13URR1B49501727	NonProperStrand	1	chr13	49501562	49501662	SINE	B1_Mur3	Alu	chr13B1_Mur349501563	ProperStrand	1	1	-inf
chr7	92742309	92742425	LINE	Lx2	L1	chr7Lx292742142	ProperStrand	3	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	27	1	-19.8198
chr17	39845941	39846041	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	106071324	106071414	LTR	RMER6B	ERVK	chr8RMER6B106071272	ProperStrand	1	1	-inf
chrX	136214255	136214345	LTR	ORR1A4-int	MaLR	chrXORR1A4-int136214253	NonProperStrand	17	chrX	136214132	136214232	LTR	ORR1A4	MaLR	chrXORR1A4136213908	NonProperStrand	6	4	-inf
chr4	44494998	44495098	LTR	MT2A	ERVL	chr4MT2A44494887	ProperStrand	1	chr4	44494750	44494840	LTR	MTEa	MaLR	chr4MTEa44494729	ProperStrand	1	1	-inf
chr9	14440767	14440867	protein_coding	Amotl1	intron	ENSMUSG00000013076	NonProperStrand	4	chr9	14084516	14084606	protein_coding	Sesn3	intron	ENSMUSG00000032009	NonProperStrand	1	1	-inf
chr8	52797249	52797349	LINE	L1Md_A	L1	chr8L1Md_A52797034	ProperStrand	1	chr8	52796841	52796931	LINE	L1_Mur3	L1	chr8L1_Mur352796759	NonProperStrand	1	1	-inf
chr12	79322247	79322310	SINE	B1_Mus2	Alu	chr12B1_Mus279322218	ProperStrand	3	chr19	6007257	6007315	protein_coding	Capn1	exon	ENSMUSG00000024942	ProperStrand	8	2	-21.0103
chr1	72198401	72198464	Low_complexity	LTR82B	ERVL	chr1LTR82B72198292	ProperStrand	1	chr15	75896297	75896367	protein_coding	Scrib	intron	ENSMUSG00000022568	ProperStrand	50	1	-inf
chr9	110281285	110281338	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr1	153278027	153278070	protein_coding	1190005F20Rik	intron	ENSMUSG00000053286	NonProperStrand	31	1	-8.8892
chr17	31424736	31424817	LINE	Lx8	L1	chr17Lx831424557	NonProperStrand	1	chr17	31423915	31423967	SINE	B2_Mm1a	B2	chr17B2_Mm1a31423785	NonProperStrand	1	1	-inf
chrX	135802039	135802060	lincRNA	C330013F16Rik	intron	ENSMUSG00000086807	NonProperStrand	32	chr11	74711902	74711985	protein_coding	Tsr1	exon	ENSMUSG00000038335	NonProperStrand	3	1	-19.2250
chr1	122357170	122357230	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr5	32459083	32459151	protein_coding	Fosl2	utr3	ENSMUSG00000029135	ProperStrand	2	1	-16.3749
chr17	39848605	39848803	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr16	23110835	23110925	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	4	-6.5809
chr8	48785691	48785791	DNA	RCHARR1	MER1_type	chr8RCHARR148785372	NonProperStrand	1	chr8	48785892	48785982	LINE	L1Md_F2	L1	chr8L1Md_F248785788	ProperStrand	1	1	-inf
chr17	39847981	39848007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	39959643	39959659	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	5	1	-3.2379
chr10	128560926	128560967	LINE	L1_Rod	L1	chr10L1_Rod128560937	ProperStrand	1	chr5	137302077	137302139	protein_coding	Emid2	intron	ENSMUSG00000004415	ProperStrand	82	1	-inf
chr19	5279937	5283651	protein_coding	Sf3b2	exon	ENSMUSG00000024853	ProperStrand	58	chr12	109646739	109649232	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-7.8598
chr1	118665234	118665315	LINE	L1Md_F2	L1	chr1L1Md_F2118664925	NonProperStrand	1	chr5	146261022	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr12	28438273	28438383	LINE	L1_Mus1	L1	chr12L1_Mus128437502	NonProperStrand	13	chr13	49693758	49693860	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	2	-inf
chr12	12383778	12383868	SINE	B1_Mus1	Alu	chr12B1_Mus112383803	NonProperStrand	1	chr12	12383075	12383175	protein_coding	Fam49a	utr3	ENSMUSG00000020589	NonProperStrand	7	1	-inf
chr16	52540729	52540829	LTR	ORR1D2	MaLR	chr16ORR1D252540750	NonProperStrand	1	chr16	52541071	52541161	SINE	B1_Mus2	Alu	chr16B1_Mus252541066	ProperStrand	1	1	-inf
chr13	112578190	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr19	56885693	56885716	protein_coding	A630007B06Rik	intron	ENSMUSG00000035173	NonProperStrand	6	1	-8.8671
chr7	134721197	134721297	protein_coding-noncoding	Phkg2	utr5	ENSMUSG00000030815	ProperStrand	1	chr7	134721060	134721150	protein_coding	Phkg2	exon	ENSMUSG00000030815	ProperStrand	8	1	-inf
chr9	40802777	40802831	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr7	28896885	28896926	protein_coding	Fcgbp	intron	ENSMUSG00000047730	NonProperStrand	69	1	-7.1612
chr12	108178134	108178199	Low_complexity	CT-rich	Low_complexity	chr12CT-rich108178096	NonProperStrand	1	chr12	108178834	108178874	Simple_repeat	(GGGGA)n	Simple_repeat	chr12(GGGGA)n108178783	NonProperStrand	1	1	-inf
chr2	132249805	132249865	SINE	B3	B2	chr2B3132249765	NonProperStrand	3	chr9	123461848	123461877	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr9	22473866	22473966	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	chr9	22474289	22474379	pseudogene	Gm16165	.	ENSMUSG00000089958	ProperStrand	1	1	-inf
chr1	118944672	118944708	LTR	MT2B	ERVL	chr1MT2B118944610	NonProperStrand	2	chr1	118944182	118944263	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int118944055	NonProperStrand	6	1	-inf
chr13	65052254	65052354	LINE	L1_Mur2	L1	chr13L1_Mur265051898	ProperStrand	1	chr13	65052429	65052519	LINE	L1_Mur2	L1	chr13L1_Mur265052282	ProperStrand	1	1	-inf
chr14	122202923	122203013	LTR	MLT1J1	MaLR	chr14MLT1J1122202842	ProperStrand	10	chr14	122203076	122203176	LTR	MLT1J1	MaLR	chr14MLT1J1122203034	ProperStrand	7	7	-inf
chr17	39847179	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	37675448	37675506	protein_coding	Pcdhb21	exon	ENSMUSG00000044022	ProperStrand	8	1	-3.3803
chr17	39846784	39846823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	88482495	88482549	SINE	B1_Mus2	Alu	chr3B1_Mus288482394	ProperStrand	1	1	-inf
chr17	39847431	39847494	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	47491270	47491343	Simple_repeat	(TTCA)n	Simple_repeat	chr14(TTCA)n47491288	ProperStrand	1	1	-inf
chr15	7874367	7874430	protein_coding	Wdr70	intron	ENSMUSG00000039828	ProperStrand	93	chr11	68336805	68336858	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-9.2386
chr9	123461933	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	106761152	106761242	protein_coding	Tk2	intron	ENSMUSG00000035824	NonProperStrand	17	1	-3.3592
chr13	44741523	44741613	LTR	ORR1B1	MaLR	chr13ORR1B144741363	NonProperStrand	6	chr13	44741609	44741712	SINE	B2_Mm2	B2	chr13B2_Mm244741616	NonProperStrand	4	3	-inf
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	110281285	110281334	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	5	-11.1316
chr9	92542402	92542473	LTR	IAPLTR1a_Mm	ERVK	chr9IAPLTR1a_Mm92542208	NonProperStrand	10	chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	44	1	-16.3246
chr15	59022498	59022613	LTR	MLT1D	MaLR	chr15MLT1D59022434	ProperStrand	1	chr15	58992528	58992561	LTR	ORR1D2	MaLR	chr15ORR1D258992437	NonProperStrand	2	1	-inf
chr14	122258859	122258896	LTR	ORR1D1	MaLR	chr14ORR1D1122258769	ProperStrand	1	chr17	39846481	39846508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	61724566	61724666	LINE	L1Md_F3	L1	chr8L1Md_F361724585	ProperStrand	1	chr8	61724265	61724355	LINE	L1_Mur3	L1	chr8L1_Mur361724052	ProperStrand	1	1	-inf
chr14	35281793	35281883	protein_coding	Bmpr1a	intron	ENSMUSG00000021796	ProperStrand	2	chr14	36177766	36177866	protein_coding	Grid1	intron	ENSMUSG00000041078	ProperStrand	16	1	-inf
chr17	39847551	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	151738795	151738832	pseudogene	Gm650	.	ENSMUSG00000052157	ProperStrand	1	1	-inf
chr17	39847693	39847713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr7	118120199	118120230	protein_coding	Mrvi1	intron	ENSMUSG00000005611	NonProperStrand	2	1	-19.7460
chr9	99009030	99009049	protein_coding	Pik3cb	intron	ENSMUSG00000032462	NonProperStrand	19	chr17	32771038	32771108	protein_coding	Gm9705	intron	ENSMUSG00000062464	NonProperStrand	20	1	-16.5940
chr4	85279210	85279251	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	chr15	79539430	79540453	protein_coding	Gtpbp1	intron	ENSMUSG00000042535	NonProperStrand	156	1	-8.7668
chr3	57508762	57508852	LINE	L1Md_F2	L1	chr3L1Md_F257504283	NonProperStrand	1	chr3	57536356	57536398	LTR	RLTR25B	ERVK	chr3RLTR25B57536249	NonProperStrand	3	1	-inf
chr17	39847440	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	97496320	97496336	SINE	B1_Mm	Alu	chr13B1_Mm97496271	ProperStrand	1	1	-inf
chr2	5379264	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr4	153997703	153997786	protein_coding	Prdm16	intron	ENSMUSG00000039410	NonProperStrand	22	1	-6.5200
chr19	11922542	11923420	LINE	L1Md_A	L1	chr19L1Md_A11923162	ProperStrand	1	chr17	39846747	39846802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	68612144	68612205	protein_coding	Myh10	intron	ENSMUSG00000020900	NonProperStrand	4	chr9	15326483	15326538	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	2	-20.8062
chr15	79482513	79482602	protein_coding	4933432B09Rik	intron	ENSMUSG00000042564	NonProperStrand	7	chr4	59041283	59041346	protein_coding	Gm20503	intron	ENSMUSG00000092345	ProperStrand	1	1	-inf
chr4	134766392	134766420	LINE	L1M4c	L1	chr4L1M4c134766285	ProperStrand	1	chr7	47188438	47188566	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	1	-inf
chr15	10697481	10697501	lincRNA	4930556M19Rik	intron	ENSMUSG00000092044	ProperStrand	6	chr9	123461884	123461968	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr4	84513977	84514067	LINE	L1_Mur1	L1	chr4L1_Mur184513663	NonProperStrand	2	chr7	133640645	133640745	protein_coding	Atxn2l	intron	ENSMUSG00000032637	NonProperStrand	3	1	-20.8297
chr9	62892137	62892237	LINE	L1M2	L1	chr9L1M262891767	ProperStrand	3	chr9	62892288	62893200	LINE	L1Md_F2	L1	chr9L1Md_F262892536	NonProperStrand	3	3	-inf
chr10	43528712	43528769	DNA	URR1A	MER1_type	chr10URR1A43528565	ProperStrand	2	chr10	43526978	43527028	LTR	ORR1D1	MaLR	chr10ORR1D143526930	ProperStrand	1	1	-inf
chr2	22744838	22744906	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	63178893	63179300	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	1	-6.3667
chr17	39845171	39845239	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	21848813	21848888	protein_coding	Zfp760	intron	ENSMUSG00000067928	NonProperStrand	8	1	-6.0772
chr19	3870808	3870845	protein_coding	Chka	intron	ENSMUSG00000024843	ProperStrand	73	chr5	121205025	121205052	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-9.4928
chr17	39846400	39846489	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	107335980	107336028	SINE	B3A	B2	chr11B3A107335877	NonProperStrand	2	1	-5.3533
chr16	43086029	43086138	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr14	11809007	11809041	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-4.5625
chr14	58522249	58522349	LTR	RMER6B	ERVK	chr14RMER6B58522202	NonProperStrand	1	chr14	58522048	58522138	SINE	B3A	B2	chr14B3A58522050	NonProperStrand	1	1	-inf
chr1	138630606	138630696	LINE	Lx7	L1	chr1Lx7138630611	NonProperStrand	2	chr1	138630759	138630859	SINE	B2_Mm2	B2	chr1B2_Mm2138630750	ProperStrand	2	2	-inf
chr15	99860815	99860905	LTR	RLTR19-int	ERVK	chr15RLTR19-int99860819	ProperStrand	1	chr15	99860704	99860804	SINE	B1_Mur3	Alu	chr15B1_Mur399860647	NonProperStrand	1	1	-inf
chr9	57441817	57441845	protein_coding	Ulk3	exon	ENSMUSG00000032308	NonProperStrand	19	chr2	33490005	33490072	protein_coding	Lmx1b	intron	ENSMUSG00000038765	NonProperStrand	4	1	-21.2052
chr6	67535224	67535240	LTR	IAPEY3-int	ERVK	chr6IAPEY3-int67534323	ProperStrand	1	chr4	133534511	133535536	protein_coding	Dhdds	intron	ENSMUSG00000012117	ProperStrand	62	1	-inf
chr17	39847551	39847574	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	37489669	37489699	LTR	MTA_Mm	MaLR	chr9MTA_Mm37489509	ProperStrand	1	1	-inf
chr16	93901324	93905013	protein_coding	Chaf1b	exon	ENSMUSG00000022945	ProperStrand	29	chr3	95599134	95599194	protein_coding	Rprd2	intron	ENSMUSG00000028106	NonProperStrand	18	1	-15.9381
chr10	81559654	81561283	LINE	L1_Mur2	L1	chr10L1_Mur281560964	NonProperStrand	3	chr3	57546732	57546790	protein_coding	Rnf13	intron	ENSMUSG00000036503	NonProperStrand	32	1	-19.1201
chr9	40801928	40801988	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr5	5783433	5783490	pseudogene	Gm15459	.	ENSMUSG00000083840	ProperStrand	1	1	-inf
chr17	39847476	39847544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	52085158	52085201	Simple_repeat	(TC)n	Simple_repeat	chr9(TC)n52085155	ProperStrand	1	1	-inf
chr8	114944835	114944901	Low_complexity	A-rich	Low_complexity	chr8A-rich114944808	ProperStrand	1	chr8	91582354	91582389	Simple_repeat	(ATGGTG)n	Simple_repeat	chr8(ATGGTG)n91582278	ProperStrand	1	1	-inf
chr6	29759936	29807713	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	ProperStrand	78	chr2	5379242	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-6.7972
chr4	106334513	106334603	LTR	ORR1A2	MaLR	chr4ORR1A2106334355	NonProperStrand	2	chr4	106334839	106334939	protein_coding	Ttc4	utr3	ENSMUSG00000025413	NonProperStrand	7	1	-21.1088
chr13	28951905	28951922	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	125	chr6	100606915	100607004	protein_coding	Shq1	intron	ENSMUSG00000035378	ProperStrand	53	1	-10.7983
chr12	110618504	110618556	LINE	Lx8	L1	chr12Lx8110618312	ProperStrand	3	chr12	110619362	110620385	LTR	RMER19C	ERVK	chr12RMER19C110619906	ProperStrand	10	1	-20.3377
chr2	129531739	129531839	LTR	MTD	MaLR	chr2MTD129531667	ProperStrand	1	chr2	129627446	129627537	protein_coding	Stk35	exon	ENSMUSG00000037885	ProperStrand	2	1	-inf
chr6	3201470	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr12	76564808	76564878	protein_coding	Ppp2r5e	intron	ENSMUSG00000021051	NonProperStrand	25	1	-4.5266
chr17	39846470	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	chr8	107000804	107000825	protein_coding	Ccdc79	intron	ENSMUSG00000052616	ProperStrand	4	1	-19.2369
chr7	90201832	90201900	LINE	Lx8	L1	chr7Lx890201783	ProperStrand	1	chr7	90200076	90200154	SINE	B4	B4	chr7B490199906	NonProperStrand	1	1	-inf
chr17	39847631	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	10591440	10591458	LTR	RMER5	ERV1	chr2RMER510591087	ProperStrand	4	1	-3.7035
chr8	72714422	72714451	protein_coding	Slc25a42	intron	ENSMUSG00000002346	ProperStrand	5	chr16	34549626	34549647	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-14.3047
chr17	39846816	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	24715841	24715907	LTR	MERVL-int	ERVL	chr18MERVL-int24713638	ProperStrand	2	1	-5.3533
chr17	39848252	39848345	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	6106955	6107012	protein_coding	Shroom4	intron	ENSMUSG00000068270	ProperStrand	12	1	-4.3503
chr1	186083346	186083423	LTR	MTD	MaLR	chr1MTD186083275	ProperStrand	1	chr13	97190559	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr12	79536351	79536459	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	chr6	142141328	142141345	protein_coding	Slco1a6	intron	ENSMUSG00000079262	NonProperStrand	4	1	-12.5735
chr3	3109467	3109567	LTR	IAPEY3-int	ERVK	chr3IAPEY3-int3105353	NonProperStrand	1	chr3	3109714	3109804	LTR	IAPEY3_LTR	ERVK	chr3IAPEY3_LTR3109635	NonProperStrand	1	1	-inf
chr8	86733641	86733663	SINE	PB1D10	Alu	chr8PB1D1086733565	ProperStrand	1	chr8	86734979	86735042	protein_coding	Zswim4	utr3	ENSMUSG00000035671	ProperStrand	18	1	-inf
chr13	51098239	51098298	SINE	B1_Mus1	Alu	chr13B1_Mus151098161	NonProperStrand	1	chr13	51097912	51097961	SINE	B3	B2	chr13B351097912	NonProperStrand	1	1	-inf
chr11	29453121	29453218	protein_coding	1700034F02Rik	intron	ENSMUSG00000020461	ProperStrand	7	chr11	29374408	29374533	protein_coding	Ccdc88a	intron	ENSMUSG00000032740	ProperStrand	17	1	-18.7319
chr3	82106057	82106073	LINE	L1_Mus3	L1	chr3L1_Mus382104836	NonProperStrand	1	chr17	39847216	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	8809993	8810048	LINE	Lx4B	L1	chr4Lx4B8809941	NonProperStrand	1	chr11	62618130	62618175	LTR	RLTR20B3	ERVK	chr11RLTR20B362617885	NonProperStrand	1	1	-inf
chr17	15218387	15218457	LTR	MT2A	ERVL	chr17MT2A15218185	NonProperStrand	1	chr5	77277103	77277183	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	ProperStrand	184	1	-inf
chr4	132270098	132270128	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr16	23110843	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-10.6932
chr9	79379730	79379820	LINE	Lx8	L1	chr9Lx879379676	ProperStrand	2	chr9	79379568	79379667	LTR	MTD	MaLR	chr9MTD79379403	ProperStrand	2	2	-inf
chr17	39847326	39847379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	102597199	102597277	SINE	RSINE1	B4	chr12RSINE1102597184	NonProperStrand	2	1	-6.5615
chr14	121355183	121355255	SINE	B1_Mus2	Alu	chr14B1_Mus2121355101	ProperStrand	1	chr14	121355603	121355665	SINE	PB1D7	Alu	chr14PB1D7121355601	ProperStrand	1	1	-inf
chr17	39847476	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	78311248	78311297	protein_coding	Epsti1	intron	ENSMUSG00000022014	NonProperStrand	1	1	-inf
chr11	109011643	109011706	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	105785291	105785358	LTR	MLT1B	MaLR	chr12MLT1B105785292	ProperStrand	1	1	-inf
chr5	140113996	140114119	LTR	ORR1E	MaLR	chr5ORR1E140114002	ProperStrand	1	chr13	97190549	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39843731	39843812	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr18	7869578	7869596	protein_coding	Wac	exon	ENSMUSG00000024283	ProperStrand	36	1	-3.9193
chr17	39843601	39847643	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	149120027	149120593	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	170	-inf
chr12	84198319	84198448	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	chr2	164491081	164491099	protein_coding	Wfdc11	utr5	ENSMUSG00000078940	NonProperStrand	1	1	-inf
chr17	39846453	39846494	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	107061087	107061169	SINE	B1F	Alu	chr11B1F107061102	NonProperStrand	1	1	-inf
chr17	39847216	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	57378717	57378814	protein_coding	Mcf2	intron	ENSMUSG00000031139	ProperStrand	7	1	-3.6430
chr7	111117722	111117776	LINE	L1VL1	L1	chr7L1VL1111117585	ProperStrand	2	chr18	74030174	74030266	protein_coding	Mro	intron	ENSMUSG00000064036	NonProperStrand	26	1	-20.6107
chr12	110513088	110513178	LINE	L1Md_F2	L1	chr12L1Md_F2110512837	ProperStrand	1	chr16	89980289	89980389	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	1	-inf
chr2	126822120	126822184	SINE	B2_Mm1t	B2	chr2B2_Mm1t126822012	NonProperStrand	1	chr13	97190561	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	27753751	27753787	protein_coding	Nudt3	intron	ENSMUSG00000024213	ProperStrand	62	chr17	27767939	27768032	protein_coding	Rps10	intron	ENSMUSG00000052146	ProperStrand	12	1	-15.2563
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr3	9449828	9449921	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	2	-11.8904
chr17	84226258	84226358	LTR	MT2C_Mm	ERVL	chr17MT2C_Mm84226061	NonProperStrand	1	chr17	84226133	84226223	LTR	MT2C_Mm	ERVL	chr17MT2C_Mm84226061	ProperStrand	1	1	-inf
mmu-miR-706	0	15	miRNA	mmu-miR-706	.	mmu-miR-706	NonProperStrand	6	chr11	43694029	43694163	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	1	-16.7291
chr17	34950982	34951051	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr18	56728514	56729301	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	96	1	-9.6867
chr17	39847249	39847290	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	13641690	13641708	protein_coding	Rasa3	intron	ENSMUSG00000031453	NonProperStrand	7	1	-3.6430
chr2	103766800	103766906	LTR	MLT1D	MaLR	chr2MLT1D103766723	ProperStrand	4	chr2	103755056	103755098	lincRNA	Gm13881	intron	ENSMUSG00000084756	NonProperStrand	12	2	-inf
chr15	76467097	76467197	protein_coding-noncoding	Tonsl	utr3	ENSMUSG00000059323	NonProperStrand	1	chr15	76467013	76467103	protein_coding	Tonsl	exon	ENSMUSG00000059323	NonProperStrand	1	1	-inf
chr17	39846718	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	122375453	122375545	LTR	MMETn-int	ERVK	chr2MMETn-int122372882	NonProperStrand	1	1	-inf
chr17	39847272	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	167378410	167393765	protein_coding	Brp44	intron	ENSMUSG00000026568	NonProperStrand	1	1	-inf
chr4	86216867	86216967	LTR	RLTR18-int	ERVK	chr4RLTR18-int86216772	NonProperStrand	1	chr4	86217001	86217091	LTR	RLTR18B	ERVK	chr4RLTR18B86216948	NonProperStrand	1	1	-inf
chr3	133467652	133467719	LTR	ORR1A1	MaLR	chr3ORR1A1133467398	NonProperStrand	2	chr6	90727358	90727430	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	1	-17.0110
chr5	124350296	124350386	LINE	Lx8	L1	chr5Lx8124350299	NonProperStrand	1	chr5	124350151	124350251	LTR	MTC	MaLR	chr5MTC124350038	ProperStrand	3	1	-inf
chr17	68092726	68092826	protein_coding	Lama1	intron	ENSMUSG00000032796	NonProperStrand	2	chr3	35668527	35668617	protein_coding	Atp11b	intron	ENSMUSG00000037400	ProperStrand	8	1	-23.4058
chr6	87997490	87997507	SINE	B1F1	Alu	chr6B1F187997416	NonProperStrand	4	chr12	78350926	78351043	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-11.5356
chr13	92301971	92302024	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	103	chr11	88543838	88543911	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-5.2052
chr4	43492939	43493029	SINE	B3	B2	chr4B343492960	NonProperStrand	660	chr2	164806425	164806525	protein_coding	Slc12a5	intron	ENSMUSG00000017740	ProperStrand	54	1	-7.4444
chr9	108563491	108564657	LINE	L2a	L2	chr9L2a108563482	ProperStrand	10	chr9	108563670	108564895	protein_coding	Slc25a20	intron	ENSMUSG00000032602	ProperStrand	44	9	-inf
chr7	117226488	117226578	protein_coding	Zfp143	intron	ENSMUSG00000061079	ProperStrand	2	chr7	117197480	117197580	protein_coding	Ipo7	intron	ENSMUSG00000066232	ProperStrand	2	1	-19.8939
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	33901754	33901807	antisense	Gm11052	.	ENSMUSG00000079143	ProperStrand	1	1	-inf
chr11	109011745	109011774	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	104882646	104882665	LTR	MTA_Mm	MaLR	chr3MTA_Mm104882557	NonProperStrand	4	1	-11.7441
chr17	39846453	39846513	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	36648296	36648331	SINE	B1_Mus1	Alu	chr18B1_Mus136648301	NonProperStrand	1	1	-inf
chr1	161035399	161035459	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr9	15314935	15314983	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-10.8625
chr8	97319597	97319697	LTR	IAPEz-int	ERVK	chr8IAPEz-int97319534	ProperStrand	1	chr8	97319343	97319433	LTR	IAPLTR1_Mm	ERVK	chr8IAPLTR1_Mm97319165	ProperStrand	1	1	-inf
chr1	178330601	178330630	LTR	MER21B	ERV1	chr1MER21B178330411	NonProperStrand	14	chr11	102476577	102476653	lincRNA	Gm11636	exon	ENSMUSG00000086105	ProperStrand	9	1	-18.9138
chr7	134893039	134893077	protein_coding	Fbxl19	intron	ENSMUSG00000030811	ProperStrand	91	chrX	93540700	93540798	protein_coding	Hsf3	intron	ENSMUSG00000045802	ProperStrand	120	1	-9.7940
chr16	35981717	35981744	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr5	149049726	149049823	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-9.1339
chr8	13416897	13416915	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	13	chr10	62847214	62847322	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-14.3737
chr16	18407375	18407431	protein_coding	Comt	utr3	ENSMUSG00000000326	ProperStrand	7	chr13	44869580	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.8338
chr11	6620371	6620429	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	14	chr12	83823900	83823964	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	1	-12.3701
chr5	115560820	115560959	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	165	chr11	115586093	115586109	pseudogene	Gm11703	.	ENSMUSG00000083016	ProperStrand	1	1	-inf
chr12	74167241	74167341	LTR	ORR1C1	MaLR	chr12ORR1C174167069	ProperStrand	1	chr12	74167598	74167688	SINE	B1_Mur1	Alu	chr12B1_Mur174167567	ProperStrand	1	1	-inf
chr17	45568272	45569717	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr13	44869618	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-3.0727
chr5	122158485	122158559	LTR	MLT1F1	MaLR	chr5MLT1F1122158499	NonProperStrand	4	chr5	122158341	122158405	SINE	B1_Mur4	Alu	chr5B1_Mur4122158329	ProperStrand	3	1	-inf
chr19	35517861	35517951	LINE	L1M5	L1	chr19L1M535517765	ProperStrand	1	chr7	47188514	47188614	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	1	-inf
chr2	10703489	10703579	LINE	Lx8	L1	chr2Lx810703262	ProperStrand	1	chr2	10703025	10703125	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n10703026	NonProperStrand	1	1	-inf
chr3	96269705	96269766	LTR	MT2A	ERVL	chr3MT2A96269392	ProperStrand	5	chr2	91648300	91648359	protein_coding	Ambra1	intron	ENSMUSG00000040506	NonProperStrand	61	1	-17.2064
chr7	80188075	80188121	LTR	RMER10B	ERVL	chr7RMER10B80187969	ProperStrand	1	chr16	91715660	91715690	lincRNA	Gm10785	exon	ENSMUSG00000085169	ProperStrand	4	1	-inf
chr12	28853017	28853107	LTR	ORR1A2	MaLR	chr12ORR1A228853001	ProperStrand	1	chr17	39847248	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr10	31537215	31537301	LINE	L1Md_F2	L1	chr10L1Md_F231535640	ProperStrand	1	chr17	39846843	39847797	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	102829373	102829435	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr6	29425329	29425389	protein_coding	Kcp	intron	ENSMUSG00000059022	NonProperStrand	14	1	-12.8375
chr17	39847204	39847234	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	78989274	78989378	protein_coding	Sox10	intron	ENSMUSG00000033006	NonProperStrand	8	1	-3.3803
chr11	100701686	100701776	protein_coding	Stat5b	intron	ENSMUSG00000020919	ProperStrand	21	chr11	120751111	120751211	protein_coding	Ccdc57	intron	ENSMUSG00000048445	NonProperStrand	71	1	-13.8141
chr3	8408200	8408290	LINE	L1_Mus1	L1	chr3L1_Mus18404498	NonProperStrand	2	chr3	8408299	8408399	LTR	MTA_Mm	MaLR	chr3MTA_Mm8408326	ProperStrand	2	2	-inf
chr14	16406799	16406833	LINE	L1Md_F	L1	chr14L1Md_F16404888	ProperStrand	1	chr12	110882144	110882170	lincRNA	Rian	intron	ENSMUSG00000091793	NonProperStrand	7	1	-inf
chr17	39847622	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	53190684	53190708	SINE	B4A	B4	chr19B4A53190523	ProperStrand	5	1	-3.2379
chrX	140728859	140728959	LINE	Lx7	L1	chrXLx7140728864	NonProperStrand	1	chrX	140728721	140728811	LTR	MTC	MaLR	chrXMTC140728724	NonProperStrand	1	1	-inf
chr5	7604518	7604618	LINE	L1_Mur1	L1	chr5L1_Mur17603826	NonProperStrand	1	chr5	8090586	8090676	protein_coding	Adam22	intron	ENSMUSG00000040537	NonProperStrand	16	1	-inf
chr17	55652235	55652326	protein_coding	St6gal2	utr3	ENSMUSG00000024172	ProperStrand	7	chr8	114495378	114495478	protein_coding	Adat1	utr3	ENSMUSG00000031949	NonProperStrand	66	2	-19.6433
chr11	97629160	97629184	SINE	B3	B2	chr11B397629140	NonProperStrand	1	chr4	116795657	116795738	protein_coding	Btbd19	intron	ENSMUSG00000073771	NonProperStrand	4	1	-inf
chr5	34513632	34513722	LINE	L2	L2	chr5L234513493	ProperStrand	1	chr5	34503638	34503738	protein_coding	Haus3	intron	ENSMUSG00000079555	ProperStrand	8	1	-inf
chr14	32519726	32519803	protein_coding	Ankrd28	intron	ENSMUSG00000014496	NonProperStrand	75	chr8	123990084	123990125	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.7739
chr2	49260342	49260432	LTR	MLT1E2	MaLR	chr2MLT1E249260085	NonProperStrand	1	chr2	49505356	49505456	protein_coding	Kif5c	intron	ENSMUSG00000026764	ProperStrand	25	1	-inf
chr2	30066740	30066840	SINE	B2_Mm2	B2	chr2B2_Mm230066749	NonProperStrand	2	chr2	30066644	30066734	Simple_repeat	(TCTCC)n	Simple_repeat	chr2(TCTCC)n30066544	ProperStrand	2	2	-inf
chr8	124257074	124257149	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	224	chr4	136343366	136343384	protein_coding	Ephb2	intron	ENSMUSG00000028664	NonProperStrand	64	1	-9.2525
chr2	29739234	29739311	LTR	RMER19A	ERVK	chr2RMER19A29738792	NonProperStrand	4	chr11	98359065	98359132	protein_coding	Ikzf3	intron	ENSMUSG00000018168	NonProperStrand	18	1	-20.2607
chr1	59704280	59704328	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	chr12	109642844	109642906	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-7.6323
chr14	55680378	55680632	antisense	RP23-171A13.8	.	ENSMUSG00000093452	NonProperStrand	3	chr14	55680624	55680801	protein_coding	Zfhx2	utr3	ENSMUSG00000040721	ProperStrand	10	1	-20.3377
chr15	16197842	16197932	LINE	L1_Mur1	L1	chr15L1_Mur116196143	ProperStrand	1	chr15	16198094	16198194	LINE	L1_Mur1	L1	chr15L1_Mur116198052	ProperStrand	1	1	-inf
chr17	39847341	39847752	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	122768917	123065910	protein_coding	Sox6	intron	ENSMUSG00000051910	ProperStrand	19	3	-3.3580
chr3	91009496	91009596	LTR	RLTR15	ERVK	chr3RLTR1591009436	NonProperStrand	1	chr3	91009668	91009758	Simple_repeat	(TA)n	Simple_repeat	chr3(TA)n91009678	NonProperStrand	1	1	-inf
chr15	36705775	36705852	protein_coding	Ywhaz	intron	ENSMUSG00000022285	NonProperStrand	1	chr5	142904179	142904352	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	390	1	-inf
chr2	90395144	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr3	84885239	84885270	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	1	-7.6409
chr17	39847178	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	26918861	26918903	protein_coding	Tmem8c	intron	ENSMUSG00000009214	NonProperStrand	8	1	-3.3803
chr13	20590192	20590235	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	chr1	152567427	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	1	-8.8032
chr1	89924577	89924708	LINE	Lx6	L1	chr1Lx689924095	ProperStrand	1	chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	117781373	117781428	LTR	LTRIS_Mus	ERV1	chr10LTRIS_Mus117780962	ProperStrand	2	chr17	39846962	39847026	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr15	86218319	86218417	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	chr13	55562069	55562101	protein_coding	Grk6	utr3	ENSMUSG00000074886	NonProperStrand	87	1	-8.0498
chr7	143515312	143515402	LINE	L1MC4	L1	chr7L1MC4143515140	NonProperStrand	4	chr7	143517116	143517216	LINE	L1_Mm	L1	chr7L1_Mm143516531	ProperStrand	5	2	-inf
chr10	127399415	127399457	LTR	RLTR1B	ERV1	chr10RLTR1B127398989	ProperStrand	2	chr17	39847258	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	35889301	35889469	lincRNA	Gm20442	intron	ENSMUSG00000092600	NonProperStrand	38	chrX	134356202	134356228	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-11.0917
chr5	140345925	140345995	LTR	MLT1B	MaLR	chr5MLT1B140345870	ProperStrand	1	chr5	140345765	140345822	LTR	MTA_Mm	MaLR	chr5MTA_Mm140345433	ProperStrand	1	1	-inf
chr11	79477700	79477748	protein_coding	Rab11fip4	intron	ENSMUSG00000017639	ProperStrand	32	chr2	5379296	5379354	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.7728
chr12	80297038	80297138	SINE	B1_Mur4	Alu	chr12B1_Mur480296994	NonProperStrand	1	chr12	80297323	80297413	SINE	B3	B2	chr12B380297304	ProperStrand	1	1	-inf
chr11	61519809	61519877	protein_coding	Slc5a10	intron	ENSMUSG00000042371	ProperStrand	108	chr11	87461801	87461879	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	3	-16.5554
chr10	128132658	128132722	protein_coding	Rab5b	intron	ENSMUSG00000000711	ProperStrand	6	chr4	53860723	53860774	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-14.1920
chr12	54696850	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr1	183322723	183322755	protein_coding	Cnih3	intron	ENSMUSG00000026514	ProperStrand	26	1	-12.0713
chr19	5797385	5797480	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr15	41384746	41384802	protein_coding	Oxr1	intron	ENSMUSG00000022307	ProperStrand	55	1	-4.6057
chr5	90491728	90491744	SINE	ID4_	ID	chr5ID4_90491693	NonProperStrand	1	chr10	77096451	77166324	protein_coding	Ube2g2	intron	ENSMUSG00000009293	NonProperStrand	37	1	-inf
chr17	24505385	24505403	protein_coding	Abca3	intron	ENSMUSG00000024130	NonProperStrand	41	chr2	130276315	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	1	-11.2073
chr11	58059767	58059867	LTR	MTD	MaLR	chr11MTD58059792	NonProperStrand	2	chr11	58059680	58059770	SINE	B3A	B2	chr11B3A58059646	ProperStrand	3	2	-inf
chr9	71836982	71837046	protein_coding	Tcf12	intron	ENSMUSG00000032228	ProperStrand	21	chr5	122449338	122449417	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-12.5527
chr17	39847172	39847218	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	22899918	22899976	protein_coding	Cct4	intron	ENSMUSG00000007739	NonProperStrand	5	1	-4.3348
chr6	28888418	28888518	LINE	L1MC4	L1	chr6L1MC428888263	NonProperStrand	1	chr6	28132622	28132712	LINE	L1Md_A	L1	chr6L1Md_A28128153	NonProperStrand	2	1	-inf
chr11	43564198	43564253	LTR	RMER6B	ERVK	chr11RMER6B43564083	ProperStrand	1	chr11	43565194	43565296	SINE	B1F	Alu	chr11B1F43565165	NonProperStrand	1	1	-inf
chrX	103539113	103539203	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int103538222	ProperStrand	1	chrX	103539374	103539474	LTR	MTA_Mm	MaLR	chrXMTA_Mm103539327	ProperStrand	1	1	-inf
chrX	16658585	16658648	LTR	MER34A	ERV1	chrXMER34A16658580	ProperStrand	1	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr15	93034742	93034766	Simple_repeat	(GGAA)n	Simple_repeat	chr15(GGAA)n93034707	ProperStrand	1	chr16	13919564	13919625	protein_coding	Mpv17l	intron	ENSMUSG00000022679	ProperStrand	42	1	-inf
chr18	35324504	35324554	protein_coding	Ctnna1	intron	ENSMUSG00000037815	NonProperStrand	119	chr2	32963745	32963785	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-7.5347
chr12	100870166	100870235	LTR	MERVL-int	ERVL	chr12MERVL-int100870123	NonProperStrand	2	chr12	100871401	100871470	SINE	B3	B2	chr12B3100871315	NonProperStrand	2	2	-inf
chr11	8533940	8533973	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr15	57935032	57935137	protein_coding	Atad2	intron	ENSMUSG00000022360	NonProperStrand	53	1	-8.1934
chr17	4082935	4082992	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr6	92122785	92122817	protein_coding	Nr2c2	utr3	ENSMUSG00000005893	ProperStrand	51	1	-11.1876
chr6	60280065	60280082	LINE	Lx2B	L1	chr6Lx2B60280039	NonProperStrand	1	chr1	143809080	143809211	Low_complexity	A-rich	Low_complexity	chr1A-rich143809086	ProperStrand	1	1	-inf
chr17	39847244	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	86309575	86309675	protein_coding	Ube2cbp	intron	ENSMUSG00000032415	NonProperStrand	8	1	-3.3803
chr4	100126089	100126123	LINE	Lx7	L1	chr4Lx7100125541	ProperStrand	1	chr17	30246050	30246126	protein_coding	Zfand3	intron	ENSMUSG00000044477	NonProperStrand	157	1	-inf
chr16	8848257	8848311	protein_coding	1810013L24Rik	intron	ENSMUSG00000022507	ProperStrand	32	chr2	5379307	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.7728
chr1	77490436	77490507	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	chr2	23197035	23197057	protein_coding	Nxph2	intron	ENSMUSG00000069132	ProperStrand	13	1	-12.3680
chr11	121609380	121610022	LTR	MTEb	MaLR	chr11MTEb121609376	NonProperStrand	2	chr1	169747543	169747559	protein_coding	Lmx1a	intron	ENSMUSG00000026686	ProperStrand	6	2	-inf
chr11	87192770	87192815	protein_coding	Rad51c	utr3	ENSMUSG00000007646	NonProperStrand	15	chr1	4774313	4774428	protein_coding	Mrpl15	intron	ENSMUSG00000033845	ProperStrand	5	1	-20.3737
chr7	137096121	137096160	LINE	L1ME3	L1	chr7L1ME3137095682	ProperStrand	3	chr5	146261259	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	1	-17.7002
chr9	110281309	110281346	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr2	32047518	32051055	protein_coding	Prrc2b	intron	ENSMUSG00000039262	ProperStrand	61	1	-7.5301
chr16	18260119	18260192	protein_coding	Dgcr8	intron	ENSMUSG00000022718	ProperStrand	60	chr13	44869580	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.4925
chr13	29609186	29928925	protein_coding-noncoding	Cdkal1	utr3	ENSMUSG00000006191	ProperStrand	11	chr13	29609282	29929379	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	7	-inf
chr17	39846742	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	64938393	64938424	SINE	ID_B1	B4	chr18ID_B164938361	NonProperStrand	1	1	-inf
chr11	96073037	96073136	LTR	RMER19C	ERVK	chr11RMER19C96072492	ProperStrand	3	chr11	96074035	96075013	SINE	B1_Mus1	Alu	chr11B1_Mus196074953	ProperStrand	1	1	-inf
chr3	9428345	9428361	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	13	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.5903
chr12	110570791	110570891	LINE	Lx4A	L1	chr12Lx4A110570810	ProperStrand	1	chr12	110569051	110570781	LTR	ORR1A2	MaLR	chr12ORR1A2110570484	NonProperStrand	1	1	-inf
chr11	109011661	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	58520557	58520638	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-4.2632
chr14	34685117	34685195	LINE	Lx5	L1	chr14Lx534684762	NonProperStrand	2	chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr12	109649617	109656371	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	2	-4.5213
chr17	39843994	39844015	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr8	89054060	89054091	protein_coding	Abcc12	intron	ENSMUSG00000036872	NonProperStrand	35	2	-8.2969
chr10	91278229	91278319	LTR	IAPEz-int	ERVK	chr10IAPEz-int91277562	NonProperStrand	1	chr10	91278401	91278501	LTR	IAPEz-int	ERVK	chr10IAPEz-int91278316	NonProperStrand	1	1	-inf
chr17	39847298	39847323	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	118637794	118637829	LTR	RLTR11B	ERVK	chr2RLTR11B118637653	NonProperStrand	1	1	-inf
chr6	88335007	88335070	protein_coding	Eefsec	intron	ENSMUSG00000033216	ProperStrand	284	chr1	152838199	152838252	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	1	-8.2117
chr17	39843936	39844020	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr2	156392200	156392249	protein_coding	0610011L14Rik	intron	ENSMUSG00000027628	NonProperStrand	56	1	-4.1175
chr6	79034572	79034596	LINE	L1Md_F2	L1	chr6L1Md_F279034452	NonProperStrand	2	chr17	39847138	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr15	58022464	58022515	protein_coding	Fbxo32	intron	ENSMUSG00000022358	ProperStrand	17	chr15	39211710	39211771	protein_coding	Rims2	intron	ENSMUSG00000037386	ProperStrand	43	1	-15.2591
chr7	12979556	12979609	LINE	L1_Mur2	L1	chr7L1_Mur212979270	NonProperStrand	7	chr17	39847698	39847741	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-4.7560
chr2	22744861	22744923	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	123916776	123916848	LINE	L2c	L2	chr4L2c123916698	ProperStrand	1	1	-inf
chr2	111149637	111149737	LINE	L1Md_F2	L1	chr2L1Md_F2111149420	NonProperStrand	1	chr2	111149756	111149846	LTR	RMER5	ERV1	chr2RMER5111149781	NonProperStrand	1	1	-inf
chr13	44790974	44791064	SINE	B1_Mur2	Alu	chr13B1_Mur244790899	NonProperStrand	3	chr13	44791062	44791163	SINE	B3A	B2	chr13B3A44791077	ProperStrand	2	2	-inf
chr15	95812863	95812905	LINE	L1MA4	L1	chr15L1MA495812401	ProperStrand	6	chr15	95799107	95799219	protein_coding	Ano6	intron	ENSMUSG00000064210	ProperStrand	31	4	-inf
chr8	31149908	31149951	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr18	35557127	35557231	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-7.9160
chr11	121619843	121619933	Low_complexity	CT-rich	Low_complexity	chr11CT-rich121619847	NonProperStrand	6	chr11	121619709	121619809	SINE	B1_Mus1	Alu	chr11B1_Mus1121619673	ProperStrand	6	6	-inf
chr17	26468398	26468418	LINE	L1MCa	L1	chr17L1MCa26468232	ProperStrand	2	chr17	39846352	39846472	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr15	97787521	97787611	LTR	BGLII_B	ERVK	chr15BGLII_B97787294	NonProperStrand	4	chr15	97787618	97787718	LTR	RLTR11A	ERVK	chr15RLTR11A97787598	ProperStrand	7	4	-inf
chr2	36070160	36070219	SINE	B3	B2	chr2B336070095	ProperStrand	1	chr2	36086467	36086546	protein_coding	Ptgs1	intron	ENSMUSG00000047250	NonProperStrand	1	1	-inf
chr9	123461903	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	156829189	156829317	protein_coding	Dsn1	intron	ENSMUSG00000027635	ProperStrand	19	1	-3.1531
chr12	87336125	87341549	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	132	chr11	30906880	30906971	protein_coding	Asb3	intron	ENSMUSG00000020305	NonProperStrand	27	1	-12.0546
chrX	100279649	100279749	LTR	MTD-int	MaLR	chrXMTD-int100278722	NonProperStrand	1	chrX	100280022	100280112	LTR	MTD	MaLR	chrXMTD100279868	NonProperStrand	1	1	-inf
chr4	134053049	134053149	protein_coding-noncoding	Paqr7	utr5	ENSMUSG00000037348	NonProperStrand	3	chr4	134053157	134053247	protein_coding	Paqr7	intron	ENSMUSG00000037348	NonProperStrand	4	3	-inf
chr6	3201516	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr3	116342616	116342639	protein_coding	Hiat1	intron	ENSMUSG00000089911	ProperStrand	16	1	-5.4054
chr3	86138105	86138567	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	chr13	108671293	108671393	protein_coding	Zswim6	intron	ENSMUSG00000032846	NonProperStrand	5	1	-16.3120
chr8	6667188	6667278	LINE	L1Md_F	L1	chr8L1Md_F6665813	NonProperStrand	1	chr12	54944924	54945024	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	1	-inf
chr2	102829380	102829447	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr18	49878255	49878279	protein_coding	Dtwd2	intron	ENSMUSG00000024505	NonProperStrand	26	1	-11.5663
chr3	153453943	153454033	protein_coding	5730460C07Rik	intron	ENSMUSG00000062046	ProperStrand	9	chr3	153593750	153593850	protein_coding	Acadm	intron	ENSMUSG00000062908	ProperStrand	41	2	-inf
chr5	104831006	104831067	Low_complexity	CT-rich	Low_complexity	chr5CT-rich104830770	NonProperStrand	1	chr9	66425676	66425724	antisense	Gm15563	.	ENSMUSG00000086387	ProperStrand	4	1	-inf
chr7	68063607	68063645	LINE	Lx5	L1	chr7Lx568063292	ProperStrand	15	chr19	8915258	8915485	protein_coding-noncoding	Bscl2	utr5	ENSMUSG00000071657	ProperStrand	9	1	-18.7314
chr9	65201724	65201824	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr2	77086282	77086372	protein_coding	Sestd1	intron	ENSMUSG00000042272	ProperStrand	17	1	-13.6197
chr19	22943943	22943971	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	36	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-10.1682
chr7	19356571	19356645	LINE	L1_Mus1	L1	chr7L1_Mus119355869	ProperStrand	8	chr9	108336782	108336867	SINE	B2_Mm2	B2	chr9B2_Mm2108336708	ProperStrand	10	1	-20.3048
chr1	122357166	122357230	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr8	121476361	121476384	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	1	-5.5646
chr16	91839788	91841540	protein_coding	Itsn1	intron	ENSMUSG00000022957	ProperStrand	147	chr9	118674950	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-4.2392
chr9	72617000	72617090	SINE	B4A	B4	chr9B4A72617016	ProperStrand	1	chr9	72617151	72617251	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n72617154	ProperStrand	2	1	-inf
chr1	181584079	181584179	LTR	MTC-int	MaLR	chr1MTC-int181584014	ProperStrand	1	chr1	181584228	181584318	LTR	RLTR10C	ERVK	chr1RLTR10C181584169	NonProperStrand	1	1	-inf
chr2	86084325	86084415	LINE	L1Md_F2	L1	chr2L1Md_F286083901	ProperStrand	1	chr2	86084696	86084796	LINE	L1_Mur2	L1	chr2L1_Mur286084410	ProperStrand	1	1	-inf
chr1	136598977	136599032	DNA	URR1B	MER1_type	chr1URR1B136598804	NonProperStrand	1	chr1	136599918	136599966	SINE	MIR	MIR	chr1MIR136599871	NonProperStrand	1	1	-inf
chr5	146261025	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	7693153	7693206	LTR	RMER13A	ERVK	chr6RMER13A7693149	ProperStrand	2	1	-12.4657
chr4	103333619	103333653	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	107	chr9	110281284	110281328	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-6.4157
chr7	81818237	81818327	SINE	ID_B1	B4	chr7ID_B181818129	NonProperStrand	1	chr7	81801098	81805789	Simple_repeat	(TTTTC)n	Simple_repeat	chr7(TTTTC)n81801108	NonProperStrand	1	1	-inf
chr12	25112628	25112728	LTR	IAPLTR3-int	ERVK	chr12IAPLTR3-int25111227	NonProperStrand	1	chr12	25112914	25113004	LTR	IAPLTR3	ERVK	chr12IAPLTR325112721	NonProperStrand	1	1	-inf
chrX	74016557	74016647	LINE	L1VL1	L1	chrXL1VL174016297	NonProperStrand	4	chrX	74014125	74014225	LINE	L1_Mm	L1	chrXL1_Mm74013884	NonProperStrand	1	1	-inf
chr11	88707314	88707362	protein_coding	Akap1	intron	ENSMUSG00000018428	ProperStrand	140	chr17	24528503	24528556	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	24	1	-12.1768
chr9	18593483	18593573	LINE	L1_Mur2	L1	chr9L1_Mur218592795	NonProperStrand	1	chr9	18593632	18593732	LINE	Lx3C	L1	chr9Lx3C18593619	NonProperStrand	1	1	-inf
chr11	12269254	12269367	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr18	25331742	25331780	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	48	1	-9.4952
chr17	39847636	39847677	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	155609397	155609476	Simple_repeat	(TA)n	Simple_repeat	chr4(TA)n155609374	ProperStrand	1	1	-inf
chr15	36598283	36598954	LINE	L1MEg	L1	chr15L1MEg36598175	NonProperStrand	3	chr17	39847718	39847760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39848124	39848161	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	130275748	130275802	SINE	MIRc	MIR	chr2MIRc130275659	ProperStrand	10	1	-4.7139
chr6	72784574	72784674	LTR	RMER5	ERV1	chr6RMER572784568	NonProperStrand	1	chr6	72784400	72784490	SINE	ID_B1	B4	chr6ID_B172784382	NonProperStrand	1	1	-inf
chr5	111101699	111101718	protein_coding	Ep400	intron	ENSMUSG00000029505	NonProperStrand	25	chr6	97136888	97136917	protein_coding	Uba3	intron	ENSMUSG00000030061	NonProperStrand	1	1	-inf
chr17	39843534	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	95836863	95836900	protein_coding	Ces1g	intron	ENSMUSG00000057074	ProperStrand	20	1	-4.5988
chrX	20670247	20670554	LINE	Lx2A1	L1	chrXLx2A120670137	NonProperStrand	8	chr17	39847207	39847235	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr9	21685993	21686033	LTR	IAPEz-int	ERVK	chr9IAPEz-int21683968	ProperStrand	12	chr13	112578190	112578240	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-7.3978
chr9	123461884	123461916	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	116359868	116359917	protein_coding	Hiat1	intron	ENSMUSG00000089911	ProperStrand	16	1	-3.4729
chr13	106988048	106990067	LINE	L1MDa	L1	chr13L1MDa106988708	ProperStrand	1	chr13	106990067	106993168	LINE	L1MDa	L1	chr13L1MDa106989451	ProperStrand	2	1	-inf
chr5	62676077	62676518	LINE	L1Md_F2	L1	chr5L1Md_F262675761	NonProperStrand	1	chr3	94877057	94877279	protein_coding	Pip5k1a	intron	ENSMUSG00000028126	NonProperStrand	30	1	-inf
chr5	115506829	115544403	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr5	115554294	115554384	pseudogene	Gm13826	.	ENSMUSG00000072692	NonProperStrand	36	7	-inf
chr17	39846818	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	mmu-miR-1983	0	20	miRNA	mmu-miR-1983	.	mmu-miR-1983	ProperStrand	1	1	-inf
chr17	39846461	39846488	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	84193343	84193360	LTR	MTD	MaLR	chr3MTD84193344	NonProperStrand	1	1	-inf
chr13	17962715	17962805	LTR	ORR1C1	MaLR	chr13ORR1C117962675	ProperStrand	1	chr13	17962284	17962384	SINE	B4	B4	chr13B417962163	NonProperStrand	1	1	-inf
chr9	66905726	66905826	SINE	PB1D9	Alu	chr9PB1D966905690	ProperStrand	2	chr9	66905885	66905975	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n66905877	NonProperStrand	2	2	-inf
chr12	64649209	64649309	LINE	Lx5	L1	chr12Lx564648052	ProperStrand	1	chr12	64649658	64649748	LINE	Lx5	L1	chr12Lx564649475	ProperStrand	1	1	-inf
chr17	39847096	39847196	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	88887035	88887552	LTR	MTEa	MaLR	chr6MTEa88887331	NonProperStrand	8	1	-3.3803
chr11	14907162	14907238	LINE	L1_Mus2	L1	chr11L1_Mus214906193	ProperStrand	2	chr6	83332739	83332805	protein_coding	Tet3	intron	ENSMUSG00000034832	NonProperStrand	13	2	-inf
chr2	13878957	13878996	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	12	chr9	123461931	123461978	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr12	23131114	23131204	Unknown	MurSatRep1	Unknown	chr12MurSatRep123131003	NonProperStrand	1	chr2	103259312	103259412	protein_coding	Elf5	intron	ENSMUSG00000027186	NonProperStrand	4	1	-inf
chr14	56715919	56715943	Simple_repeat	(TTA)n	Simple_repeat	chr14(TTA)n56715899	NonProperStrand	1	chr14	56721029	56721152	protein_coding	Ctsg	intron	ENSMUSG00000040314	ProperStrand	4	1	-inf
chr2	167020698	167065359	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr9	123461822	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	9	-13.3603
chr17	66427565	66427639	SINE	B3	B2	chr17B366427543	NonProperStrand	3	chr17	66431784	66431845	protein_coding	Ndufv2	intron	ENSMUSG00000024099	ProperStrand	63	1	-18.3494
chr9	123461989	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	122011619	122011635	protein_coding	Patl2	intron	ENSMUSG00000027233	ProperStrand	5	1	-5.8308
chr4	109887873	109887921	protein_coding	Elavl4	intron	ENSMUSG00000028546	NonProperStrand	51	chr8	89030857	89030958	protein_coding	Abcc12	intron	ENSMUSG00000036872	ProperStrand	128	2	-17.0498
chr4	11578239	11578339	LTR	MTC	MaLR	chr4MTC11578257	ProperStrand	7	chr4	11578084	11578174	SINE	B1_Mus1	Alu	chr4B1_Mus111578052	ProperStrand	1	1	-inf
chr8	119941291	119941381	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	chr13	59820461	59820561	protein_coding	Gm4934	utr3	ENSMUSG00000091311	NonProperStrand	1	1	-inf
chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr6	32933649	32933676	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-4.1975
chr14	56744889	56744957	LINE	Lx5	L1	chr14Lx556744627	NonProperStrand	1	chr14	56744098	56744171	LTR	MT2A	ERVL	chr14MT2A56744098	ProperStrand	1	1	-inf
chr7	120702444	120702497	protein_coding	Far1	intron	ENSMUSG00000030759	ProperStrand	49	chr13	44869627	44869686	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.8822
chr17	39847174	39847233	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	47311051	47311137	SINE	B4A	B4	chr14B4A47310888	ProperStrand	2	1	-6.5615
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	chr7	137410479	137410604	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-8.4538
chr1	168397282	168397413	LINE	Lx5	L1	chr1Lx5168397320	ProperStrand	2	chr9	123462101	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr6	99496566	99496628	protein_coding	Eif4e3	intron	ENSMUSG00000030068	ProperStrand	53	chr8	11457897	11457949	protein_coding	Rab20	intron	ENSMUSG00000031504	ProperStrand	3	1	-18.6488
chr7	133657955	133658045	LTR	MTE-int	MaLR	chr7MTE-int133657963	NonProperStrand	1	chr7	133657804	133657904	SINE	B1_Mur4	Alu	chr7B1_Mur4133657773	ProperStrand	1	1	-inf
chr11	101296294	101299062	LINE	L1Md_F2	L1	chr11L1Md_F2101298941	NonProperStrand	4	chr17	39846457	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr17	39848598	39848688	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	120693729	120693829	antisense	Gm11773	.	ENSMUSG00000087638	ProperStrand	4	2	-11.7046
chr1	166158225	166158315	LTR	RLTR4_MM-int	ERV1	chr1RLTR4_MM-int166156909	NonProperStrand	1	chr1	165908451	165908551	protein_coding	BC055324	intron	ENSMUSG00000041406	NonProperStrand	2	1	-inf
chr13	97190563	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr16	11399352	11399447	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	1	-4.8241
chr4	99904793	99904810	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	chr13	23574061	23574197	protein_coding	Btn2a2	intron	ENSMUSG00000053216	ProperStrand	18	1	-15.7354
chr11	3641827	3641952	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chrX	13287246	13287276	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-9.8577
chr11	87869836	87869888	SINE	B1_Mm	Alu	chr11B1_Mm87869754	ProperStrand	1	chr19	18619241	18619311	SINE	B4A	B4	chr19B4A18619192	NonProperStrand	4	1	-inf
chr13	106906812	106906887	LINE	L1_Mus1	L1	chr13L1_Mus1106906715	ProperStrand	7	chr13	106904309	106904394	LTR	ORR1D1	MaLR	chr13ORR1D1106904056	ProperStrand	1	1	-inf
chr10	52266803	52266893	LTR	ETnERV-int	ERVK	chr10ETnERV-int52266755	NonProperStrand	10	chr10	52266892	52266993	LTR	ETnERV-int	ERVK	chr10ETnERV-int52266864	NonProperStrand	1	1	-inf
chr10	73042761	73042851	protein_coding	Pcdh15	intron	ENSMUSG00000052613	NonProperStrand	45	chr10	72989329	72989429	protein_coding	Pcdh15	intron	ENSMUSG00000052613	ProperStrand	94	1	-11.7003
chr7	24515957	24515983	LINE	Lx5	L1	chr7Lx524515860	ProperStrand	1	chr11	61028201	61028320	protein_coding	Aldh3a1	intron	ENSMUSG00000019102	ProperStrand	15	1	-inf
chr11	4784195	4784285	protein_coding-noncoding	Nipsnap1	utr5	ENSMUSG00000034285	ProperStrand	1	chr11	4784410	4784510	protein_coding	Nipsnap1	intron	ENSMUSG00000034285	ProperStrand	1	1	-inf
chrX	37060133	37060149	LINE	L1MD	L1	chrXL1MD37059446	ProperStrand	1	chr17	39847082	39847103	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr7	101166327	101166417	LINE	L4	RTE	chr7L4101166276	NonProperStrand	1	chr15	66925821	66925921	SINE	B4A	B4	chr15B4A66925703	ProperStrand	1	1	-inf
chr5	69397583	69397683	LINE	Lx4B	L1	chr5Lx4B69397576	NonProperStrand	1	chr5	69397868	69397958	LINE	Lx5	L1	chr5Lx569397773	NonProperStrand	1	1	-inf
chr12	101302817	101302907	DNA	MER113	MER1_type	chr12MER113101302704	NonProperStrand	1	chr12	101302933	101303033	SINE	ID_B1	B4	chr12ID_B1101302918	ProperStrand	1	1	-inf
chr4	135611680	135611756	LTR	MurERV4-int	ERVK	chr4MurERV4-int135611677	NonProperStrand	1	chr17	39843589	39843635	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr12	72790689	72792792	LINE	L1M2	L1	chr12L1M272790627	NonProperStrand	4	chr9	123462082	123462163	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr8	73868723	73868823	protein_coding	Myo9b	intron	ENSMUSG00000004677	NonProperStrand	2	chr8	74981456	74981546	protein_coding	1700030K09Rik	intron	ENSMUSG00000052794	ProperStrand	3	1	-20.8297
chr4	118629097	118629187	LTR	RLTR21	ERVK	chr4RLTR21118629059	NonProperStrand	1	chr4	118629342	118629442	LTR	RLTR21	ERVK	chr4RLTR21118629365	NonProperStrand	1	1	-inf
chr6	48505218	48505310	protein_coding	Lrrc61	intron	ENSMUSG00000073096	ProperStrand	8	chr18	51289857	51289873	protein_coding	Prr16	intron	ENSMUSG00000073565	ProperStrand	10	1	-20.3048
chr11	109011833	109011858	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	90924415	90924606	SINE	ID_B1	B4	chr13ID_B190924530	NonProperStrand	8	1	-10.2064
chr17	39846818	39846859	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	69491702	69491769	SINE	B3A	B2	chr9B3A69491707	ProperStrand	1	1	-inf
chr5	146835609	146835676	LINE	L1_Mur2	L1	chr5L1_Mur2146835560	ProperStrand	46	chrX	95428593	95444729	protein_coding	Ar	intron	ENSMUSG00000046532	NonProperStrand	15	1	-15.3907
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr8	83366746	83366818	protein_coding	Gab1	intron	ENSMUSG00000031714	NonProperStrand	17	1	-9.3516
chr18	35613469	35616223	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr17	63224501	63224541	protein_coding	Efna5	intron	ENSMUSG00000048915	ProperStrand	104	1	-7.3177
chr16	43312480	43312556	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr3	108016898	108017366	protein_coding	Sypl2	utr3	ENSMUSG00000027887	ProperStrand	4	1	-14.3185
chr17	39847041	39847107	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	125053212	125053302	protein_coding-noncoding	Tctn2	utr5	ENSMUSG00000029386	NonProperStrand	5	1	-3.1907
chr13	49587664	49587754	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	chr4	150313336	150313436	protein_coding	Tnfrsf9	intron	ENSMUSG00000028965	ProperStrand	158	1	-10.5713
chr3	37481454	37481641	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	22	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-11.1693
chr2	73012737	73012765	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-6.1042
chr15	47140342	47140442	LINE	L1_Mur3	L1	chr15L1_Mur347140249	NonProperStrand	1	chr15	42916077	42916167	protein_coding	Rspo2	intron	ENSMUSG00000051920	NonProperStrand	4	1	-inf
chr3	30624528	30624544	SINE	B3A	B2	chr3B3A30624515	NonProperStrand	1	chr9	59563836	59563934	protein_coding	Gramd2	intron	ENSMUSG00000074259	ProperStrand	30	1	-inf
chr2	22744854	22744900	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr10	57501486	57501533	LTR	RMER17B	ERVK	chr10RMER17B57501226	ProperStrand	1	1	-inf
chr10	40339224	40339323	LINE	L1_Rod	L1	chr10L1_Rod40339204	ProperStrand	1	chr10	40339032	40339122	LINE	Lx8	L1	chr10Lx840337812	NonProperStrand	1	1	-inf
chr7	59979963	59980015	LINE	L1_Mur3	L1	chr7L1_Mur359979922	ProperStrand	1	chr11	3344724	3344773	protein_coding	Rnf185	intron	ENSMUSG00000020448	ProperStrand	20	1	-inf
chr17	74781200	74781246	protein_coding	Spast	intron	ENSMUSG00000024068	ProperStrand	20	chr5	34210319	34210397	protein_coding	Whsc1	intron	ENSMUSG00000057406	NonProperStrand	47	1	-14.7509
chr17	39846787	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	43936350	43936435	lincRNA	Gm12153	intron	ENSMUSG00000087172	ProperStrand	4	1	-3.6552
chr17	39846931	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	49252464	49252524	LTR	RLTR40	ERVK	chr6RLTR4049252224	ProperStrand	4	1	-3.6552
chr14	78732650	78732710	LINE	L1_Mus1	L1	chr14L1_Mus178731999	NonProperStrand	2	chr17	39847735	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chrX	60138275	60138341	LINE	L1Md_A	L1	chrXL1Md_A60137972	ProperStrand	2	chr6	11993463	11993506	protein_coding	Phf14	intron	ENSMUSG00000029629	ProperStrand	37	1	-21.5930
chr15	6630381	6630481	LTR	MuRRS-int	ERV1	chr15MuRRS-int6630289	NonProperStrand	1	chr15	6630710	6630800	LTR	MuRRS-int	ERV1	chr15MuRRS-int6630586	NonProperStrand	1	1	-inf
chr10	80740918	80740969	protein_coding	Tjp3	intron	ENSMUSG00000034917	ProperStrand	20	chr9	56999640	56999720	protein_coding	Gm16493	utr3	ENSMUSG00000078306	ProperStrand	2	1	-20.0050
chr3	135613999	135615350	SINE	B1_Mur1	Alu	chr3B1_Mur1135615207	ProperStrand	1	chr2	90395129	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-inf
chr17	39843434	39843484	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	107608969	107608986	protein_coding	Sema3f	intron	ENSMUSG00000034684	NonProperStrand	15	1	-5.1667
chr9	23372817	23372917	LTR	RLTR18B	ERVK	chr9RLTR18B23372841	NonProperStrand	1	chr9	23372577	23372667	Low_complexity	C-rich	Low_complexity	chr9C-rich23372508	ProperStrand	1	1	-inf
chrX	12144575	12144611	LTR	RMER17C	ERVK	chrXRMER17C12144520	NonProperStrand	1	chr9	50521852	50521878	protein_coding	Dixdc1	intron	ENSMUSG00000032064	ProperStrand	17	1	-inf
chr7	47188361	47188434	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	chr9	110281288	110281323	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.5855
chr11	116757692	116757743	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr8	73295649	73295737	protein_coding	Pik3r2	intron	ENSMUSG00000031834	ProperStrand	31	2	-inf
chr8	85852034	85852071	protein_coding-noncoding	Elmod2	utr3	ENSMUSG00000035151	NonProperStrand	22	chr2	5379296	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.5200
chr8	106818742	106818812	protein_coding	Cmtm1	intron	ENSMUSG00000031876	NonProperStrand	30	chr18	65627882	65627961	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	1	-10.6768
chrX	12801863	12801886	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr11	33161560	33162977	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-7.7285
chr3	58653521	58653611	protein_coding	Clrn1	intron	ENSMUSG00000043850	ProperStrand	16	chr5	30839348	30839448	protein_coding	Cib4	intron	ENSMUSG00000053194	NonProperStrand	36	3	-inf
chr2	154673962	154674224	protein_coding-noncoding	Raly	utr5	ENSMUSG00000027593	ProperStrand	5	chr2	154674164	154674396	protein_coding	Raly	intron	ENSMUSG00000027593	ProperStrand	47	5	-inf
chr2	167063477	167063556	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr16	20679652	20679721	protein_coding	Eif4g1	exon	ENSMUSG00000045983	ProperStrand	123	1	-9.9779
chr2	59279024	59279110	LINE	L1MB7	L1	chr2L1MB759278830	ProperStrand	1	chr17	39846355	39846394	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr13	87944703	87944793	LINE	L1_Mus4	L1	chr13L1_Mus487944625	NonProperStrand	1	chr13	87945194	87945294	Simple_repeat	(TATAA)n	Simple_repeat	chr13(TATAA)n87945202	ProperStrand	1	1	-inf
chr7	118152463	118152702	LTR	IAPEz-int	ERVK	chr7IAPEz-int118152132	ProperStrand	2	chr9	113906011	113906027	protein_coding	Fbxl2	intron	ENSMUSG00000032507	ProperStrand	5	1	-inf
chr14	79589793	79589825	protein_coding	1300010F03Rik	intron	ENSMUSG00000058997	ProperStrand	49	chr7	48806805	48806876	protein_coding	Gm6871	intron	ENSMUSG00000090744	NonProperStrand	10	1	-16.0917
chr5	151144817	151144859	protein_coding	Fry	intron	ENSMUSG00000056602	NonProperStrand	23	chr14	20391353	20391438	protein_coding	Gm2237	intron	ENSMUSG00000079354	ProperStrand	13	1	-17.0958
chr8	38452892	38452992	LTR	IAPEy-int	ERVK	chr8IAPEy-int38445582	NonProperStrand	1	chr9	123462122	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847609	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	141169826	141169866	protein_coding-noncoding	Tmem82	utr3	ENSMUSG00000043085	NonProperStrand	2	1	-5.4040
chr11	51997140	51997166	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	chr11	84041900	84041936	protein_coding	Acaca	intron	ENSMUSG00000020532	ProperStrand	53	1	-10.3291
chr11	109011655	109011987	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	45569052	45569103	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-3.0481
chr14	86741765	86741804	LINE	Lx4A	L1	chr14Lx4A86741736	ProperStrand	1	chr8	44992861	44992951	LTR	ORR1A2	MaLR	chr8ORR1A244992769	NonProperStrand	1	1	-inf
chr2	36230105	36230184	LINE	L1Md_F2	L1	chr2L1Md_F236229408	NonProperStrand	1	chr14	63464627	63464678	protein_coding	Wdfy2	intron	ENSMUSG00000014547	ProperStrand	28	1	-inf
chr15	79969979	79970036	protein_coding	Tab1	intron	ENSMUSG00000022414	NonProperStrand	44	chr15	79931435	79931496	protein_coding	Syngr1	intron	ENSMUSG00000022415	NonProperStrand	42	1	-13.3695
chr7	140011911	140014418	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr7	140024063	140027802	protein_coding	Mettl10	intron	ENSMUSG00000030960	ProperStrand	18	2	-17.7649
chr15	80083204	80083299	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr17	12919583	12919625	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	57	1	-8.1907
chrX	21431988	21432004	LINE	Lx7	L1	chrXLx721431871	NonProperStrand	1	chr14	67838577	67838603	LTR	MLT1B	MaLR	chr14MLT1B67838483	NonProperStrand	1	1	-inf
chr17	39843367	39843396	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	133419969	133420114	protein_coding	Rps6ka1	intron	ENSMUSG00000003644	NonProperStrand	25	1	-4.1672
chr11	82904868	82904950	LINE	L1Md_F2	L1	chr11L1Md_F282902471	ProperStrand	12	chr17	39848121	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-4.3503
chr17	39847512	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	115082485	115082580	LTR	MTEa	MaLR	chr8MTEa115082304	NonProperStrand	1	1	-inf
chr17	39846747	39846790	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	47950033	47950100	LTR	RLTR6_Mm	ERV1	chr6RLTR6_Mm47949968	ProperStrand	1	1	-inf
chr7	137112161	137112189	LTR	ORR1B2	MaLR	chr7ORR1B2137111881	NonProperStrand	1	chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-inf
chr5	122502042	122502139	antisense	Gm15637	.	ENSMUSG00000087386	NonProperStrand	35	chr1	181910109	181910166	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-9.1162
chr1	45388760	45388780	protein_coding	Col3a1	intron	ENSMUSG00000026043	NonProperStrand	5	chr8	70457015	70457141	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	2	-19.8360
chr5	109437718	109437818	LINE	L1VL4	L1	chr5L1VL4109436582	NonProperStrand	1	chr5	109420215	109427121	protein_coding	Vmn2r10	intron	ENSMUSG00000067010	ProperStrand	1	1	-inf
chr4	149120031	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr5	122853919	122854043	protein_coding	Arpc3	intron	ENSMUSG00000029465	ProperStrand	11	1	-10.0129
chr14	18269153	18269209	LTR	ORR1A1	MaLR	chr14ORR1A118268996	NonProperStrand	26	chr11	102264738	102264784	protein_coding	Slc25a39	exon	ENSMUSG00000018677	NonProperStrand	2	1	-20.4235
chr1	119715986	119721915	LINE	L1Md_F2	L1	chr1L1Md_F2119720014	NonProperStrand	2	chr19	27987842	27987875	protein_coding	Rfx3	intron	ENSMUSG00000040929	ProperStrand	67	1	-19.1379
chr17	24616886	24616948	SINE	B1_Mur4	Alu	chr17B1_Mur424616903	NonProperStrand	2	chr17	24618129	24618181	SINE	ID_B1	B4	chr17ID_B124618089	ProperStrand	2	2	-inf
chr8	107505380	107505465	LTR	RLTR14	ERV1	chr8RLTR14107505201	NonProperStrand	1	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-inf
chr6	124698108	124698165	protein_coding	Atn1	intron	ENSMUSG00000004263	NonProperStrand	17	chr13	55451747	55451829	protein_coding	Lman2	intron	ENSMUSG00000021484	NonProperStrand	69	1	-14.3048
chr14	120399430	120399520	LINE	Lx	L1	chr14Lx120398971	ProperStrand	2	chr14	120399518	120399618	LTR	RLTR22_Mur	ERVK	chr14RLTR22_Mur120399547	ProperStrand	5	2	-inf
chr14	50800546	50800583	LINE	L1VL4	L1	chr14L1VL450799802	NonProperStrand	15	chrX	93547061	93547108	protein_coding	Hsf3	intron	ENSMUSG00000045802	ProperStrand	120	1	-13.4544
chr17	39847475	39847870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	48120965	48142815	protein_coding	Fbxo34	intron	ENSMUSG00000037536	ProperStrand	4	2	-6.7714
chr1	122357193	122357223	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr2	156735454	156735544	pseudogene	Gm14278	.	ENSMUSG00000080880	NonProperStrand	97	1	-7.9483
chr3	115929144	115929234	LINE	L1MC2	L1	chr3L1MC2115928950	ProperStrand	6	chr8	70359127	70359227	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-12.1595
chr18	46239532	46239622	LTR	ORR1B1-int	MaLR	chr18ORR1B1-int46239534	NonProperStrand	4	chr18	46239430	46239530	LTR	ORR1B1	MaLR	chr18ORR1B146239154	NonProperStrand	5	4	-inf
chr17	70963741	70963794	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr5	72204121	72204164	protein_coding	Gabrb1	intron	ENSMUSG00000029212	ProperStrand	56	1	-6.3438
chr4	46391603	46391653	protein_coding	5830415F09Rik	intron	ENSMUSG00000028331	NonProperStrand	1	chr12	79677317	79677398	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-inf
chr9	123462055	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	18131697	18131715	protein_coding	Crisp4	intron	ENSMUSG00000025774	NonProperStrand	2	1	-8.0983
chr8	73312676	73312767	protein_coding	Mast3	intron	ENSMUSG00000031833	ProperStrand	91	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.1572
chr3	88321020	88321082	SINE	ID_B1	B4	chr3ID_B188320923	ProperStrand	3	chr6	17510691	17510776	protein_coding	Met	intron	ENSMUSG00000009376	ProperStrand	2	1	-20.2824
chr17	39847188	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	144783859	144785040	protein_coding	Ocm	intron	ENSMUSG00000029618	NonProperStrand	4	2	-8.4845
chr3	123507935	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr11	54481649	54481681	protein_coding	Rapgef6	intron	ENSMUSG00000037533	ProperStrand	26	1	-14.1696
chr6	17646028	17646129	protein_coding	St7	intron	ENSMUSG00000029534	ProperStrand	40	chr3	108804774	108804815	protein_coding	Fam102b	intron	ENSMUSG00000040339	ProperStrand	11	1	-16.3322
chr17	39847767	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	57711194	57711260	Simple_repeat	(GA)n	Simple_repeat	chr11(GA)n57711182	ProperStrand	1	1	-inf
chr4	13604692	13604710	LINE	L1Md_F	L1	chr4L1Md_F13603253	ProperStrand	5	chr2	33877032	33877164	lincRNA	C230014O12Rik	intron	ENSMUSG00000087461	ProperStrand	21	1	-19.1315
chr17	39847839	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	117966946	117966964	protein_coding	Rasgef1a	intron	ENSMUSG00000030134	NonProperStrand	2	1	-5.4040
chr1	191358971	191362264	LINE	L1Md_F2	L1	chr1L1Md_F2191358840	NonProperStrand	1	chr1	191362281	191368670	SINE	B3	B2	chr1B3191362252	NonProperStrand	1	1	-inf
chr2	122028882	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	chr2	5379239	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.3833
chr8	47893572	47893636	protein_coding	Irf2	intron	ENSMUSG00000031627	NonProperStrand	109	chr11	115564474	115564528	protein_coding	Grb2	intron	ENSMUSG00000059923	NonProperStrand	19	1	-13.1567
chr3	101579854	101581181	LTR	MTD	MaLR	chr3MTD101579595	NonProperStrand	4	chr3	101581237	101581781	SINE	B4A	B4	chr3B4A101581401	NonProperStrand	4	4	-inf
chr11	116138458	116138528	SINE	B2_Mm2	B2	chr11B2_Mm2116138473	ProperStrand	1	chr13	112578215	112578295	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr2	94061785	94061814	LINE	HAL1b	L1	chr2HAL1b94061439	NonProperStrand	2	chr17	39846808	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr2	5379231	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-4.4448
chr2	144671824	144671924	LTR	MLT1H	MaLR	chr2MLT1H144671724	NonProperStrand	1	chr2	144671962	144672052	LTR	MTE2a	MaLR	chr2MTE2a144671952	ProperStrand	1	1	-inf
chr10	25410351	25410456	Other	RMER1B	Other	chr10RMER1B25409997	ProperStrand	4	chr4	85226975	85227015	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	1	-16.3329
chr12	82199028	82199085	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	chr7	137445905	137445972	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-6.0123
chr17	25724713	25725518	protein_coding-noncoding	Lmf1	utr5	ENSMUSG00000002279	NonProperStrand	21	chr19	6395276	6395335	protein_coding	Pygm	intron	ENSMUSG00000032648	NonProperStrand	1	1	-inf
chr15	73113835	73116336	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr4	132049350	132049400	protein_coding	Sesn2	utr3	ENSMUSG00000028893	ProperStrand	15	1	-10.2368
chr16	43235995	43236025	protein_coding	Zbtb20	utr5	ENSMUSG00000022708	ProperStrand	325	chr12	109629971	109630050	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-4.4846
chr4	48634495	48634558	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	114	chr4	44933499	44933549	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-9.7894
chr2	123237732	123237757	LINE	Lx2	L1	chr2Lx2123237211	NonProperStrand	1	chr9	96749824	96749859	protein_coding	Acpl2	intron	ENSMUSG00000043587	ProperStrand	23	1	-inf
chr9	123461891	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	76968713	76984275	protein_coding	Efcab5	intron	ENSMUSG00000050944	NonProperStrand	27	2	-4.4791
chr9	78479458	78479633	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr6	51922317	51922333	protein_coding	Skap2	intron	ENSMUSG00000059182	NonProperStrand	7	1	-11.9216
chr1	93706647	93706747	protein_coding	Twist2	intron	ENSMUSG00000007805	NonProperStrand	16	chr14	20607334	20607424	protein_coding	Nid2	intron	ENSMUSG00000021806	NonProperStrand	20	1	-16.9635
chr9	65786270	65786370	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	NonProperStrand	105	chr6	50130863	50130953	protein_coding	Mpp6	intron	ENSMUSG00000038388	ProperStrand	34	2	-19.0387
chr12	17692631	17692731	SINE	B3	B2	chr12B317692596	ProperStrand	11	chr12	17692504	17692594	Simple_repeat	(CAAG)n	Simple_repeat	chr12(CAAG)n17692502	ProperStrand	11	11	-inf
chr17	39847670	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	75213925	75214005	protein_coding	Tuba4a	exon	ENSMUSG00000026202	NonProperStrand	3	1	-4.3512
chr7	107432098	107432178	LINE	L1MEf	L1	chr7L1MEf107432054	ProperStrand	1	chr7	107433047	107433099	LTR	MLT1D	MaLR	chr7MLT1D107432929	NonProperStrand	1	1	-inf
chr17	32885985	32891442	LTR	ORR1C1	MaLR	chr17ORR1C132885987	ProperStrand	1	chr17	32844276	32844366	LTR	RLTR18	ERVK	chr17RLTR1832844255	ProperStrand	1	1	-inf
chr13	119463102	119464565	protein_coding	Fgf10	intron	ENSMUSG00000021732	NonProperStrand	5	chr13	97190569	97190620	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.2290
chr9	39998143	39998243	LTR	MLT2B2	ERVL	chr9MLT2B239997992	NonProperStrand	1	chr17	46799290	46799380	protein_coding	Cul7	intron	ENSMUSG00000038545	NonProperStrand	26	1	-inf
chr10	10867788	10867878	DNA	Tigger1	MER2_type	chr10Tigger110867225	ProperStrand	1	chr10	10867973	10868073	DNA	Tigger1	MER2_type	chr10Tigger110867984	ProperStrand	1	1	-inf
chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr7	3156340	3157920	protein_coding	AU018091	utr3	ENSMUSG00000054753	ProperStrand	34	1	-5.5961
chr4	65619998	65620040	protein_coding	Astn2	intron	ENSMUSG00000028373	NonProperStrand	50	chr11	33221996	33222064	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-7.8070
chr2	5641212	5641274	SINE	B1_Mur4	Alu	chr2B1_Mur45641228	ProperStrand	3	chr16	35981716	35981761	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	1	-16.4721
chr7	135700826	135700842	SINE	ID_B1	B4	chr7ID_B1135700725	NonProperStrand	1	chr17	39843380	39843505	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39843686	39843815	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	37872249	37872279	protein_coding	Tsga10	intron	ENSMUSG00000060771	NonProperStrand	14	1	-5.7669
chr1	157366357	157366392	LTR	RLTR20B3	ERVK	chr1RLTR20B3157366358	ProperStrand	1	chr19	40409958	40409978	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	1	-inf
chr15	88864928	88864954	protein_coding	Mov10l1	intron	ENSMUSG00000015365	ProperStrand	151	chr12	78350926	78351023	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-4.1166
chr2	177073087	177073187	LINE	L1_Mus3	L1	chr2L1_Mus3177073108	ProperStrand	3	chr2	177072991	177073081	LINE	MusHAL1	L1	chr2MusHAL1177070214	ProperStrand	2	2	-inf
chr17	70963685	70963794	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr1	58900734	58900750	protein_coding	Casp8	intron	ENSMUSG00000026029	NonProperStrand	2	1	-13.6443
chr18	21235542	21235632	protein_coding	Mep1b	intron	ENSMUSG00000024313	NonProperStrand	33	chr18	21235437	21235537	pseudogene	Gm6378	.	ENSMUSG00000062962	ProperStrand	5	3	-inf
chr1	101531363	101531381	LINE	Lx8	L1	chr1Lx8101530832	NonProperStrand	1	chr17	39847761	39847835	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	86979312	86979386	SINE	PB1D10	Alu	chr6PB1D1086979258	ProperStrand	1	chr6	86993974	86994050	protein_coding	Gfpt1	intron	ENSMUSG00000029992	ProperStrand	40	1	-inf
chr19	8723994	8724023	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	37	chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	1	-14.9461
chr11	115677008	115677066	protein_coding	Tsen54	exon	ENSMUSG00000020781	NonProperStrand	20	chr11	115672231	115672303	protein_coding	Caskin2	intron	ENSMUSG00000034471	ProperStrand	36	1	-15.2990
chr17	89786774	89786874	LINE	L1M5	L1	chr17L1M589786612	NonProperStrand	1	chr17	89787057	89787147	LINE	L1M5	L1	chr17L1M589787074	NonProperStrand	1	1	-inf
chr10	78304976	78305051	LINE	L1VL2	L1	chr10L1VL278303588	NonProperStrand	5	chr10	78326658	78326742	LTR	RLTR6-int	ERV1	chr10RLTR6-int78322729	ProperStrand	12	2	-inf
chr2	29043930	29044030	LTR	RLTR25B	ERVK	chr2RLTR25B29043829	NonProperStrand	2	chr2	29044195	29044285	LTR	RLTR6_Mm	ERV1	chr2RLTR6_Mm29044186	ProperStrand	2	1	-19.8939
chr3	101072243	101072333	LTR	RLTR44E	ERVK	chr3RLTR44E101072208	NonProperStrand	1	chr3	101072428	101072528	LTR	RLTR44E	ERVK	chr3RLTR44E101072377	NonProperStrand	1	1	-inf
chr17	39845849	39845949	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr17	46644454	46646006	protein_coding	Cul9	intron	ENSMUSG00000040327	ProperStrand	54	2	-3.8804
chr17	39845505	39845616	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr5	123157883	123157900	protein_coding	P2rx4	intron	ENSMUSG00000029470	ProperStrand	14	1	-4.9353
chr11	116023628	116023701	protein_coding	Fbf1	intron	ENSMUSG00000020776	ProperStrand	74	chr1	153322565	153322638	protein_coding	Rnf2	intron	ENSMUSG00000026484	ProperStrand	71	1	-11.2618
chr6	48569019	48569078	protein_coding	Zfp775	intron	ENSMUSG00000007216	ProperStrand	1	chr3	95098240	95098328	protein_coding	Fam63a	intron	ENSMUSG00000038712	NonProperStrand	16	1	-inf
chr5	114851994	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr8	111253750	111253851	protein_coding	Zfhx3	intron	ENSMUSG00000038872	NonProperStrand	108	1	-8.1276
chr7	124554271	124554371	protein_coding	Xylt1	intron	ENSMUSG00000030657	NonProperStrand	10	chr3	40702769	40702859	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	NonProperStrand	16	1	-18.3018
chr17	79977464	79977545	LTR	MLT1D	MaLR	chr17MLT1D79977448	NonProperStrand	1	chr9	123462126	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	135012315	135012382	SINE	B1_Mus1	Alu	chr6B1_Mus1135012241	ProperStrand	4	chr6	135012382	135015200	SINE	B3	B2	chr6B3135012372	NonProperStrand	1	1	-inf
chr19	13054941	13054959	LINE	L1_Mur3	L1	chr19L1_Mur313054510	ProperStrand	1	chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	1	-inf
chr10	24174291	24174381	DNA	Zaphod	Tip100	chr10Zaphod24174195	NonProperStrand	2	chr10	24174675	24174775	DNA	Zaphod	Tip100	chr10Zaphod24174558	NonProperStrand	1	1	-inf
chr2	94181751	94181851	protein_coding	Ttc17	intron	ENSMUSG00000027194	NonProperStrand	7	chr2	94175506	94175596	protein_coding	Ttc17	intron	ENSMUSG00000027194	ProperStrand	41	1	-17.3114
chr17	39846647	39846702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	6962238	6962254	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int6961395	ProperStrand	1	1	-inf
chr5	146261024	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	51289857	51289875	protein_coding	Prr16	intron	ENSMUSG00000073565	ProperStrand	10	1	-8.6697
chr1	179304831	179304894	LINE	L1MA4A	L1	chr1L1MA4A179304784	NonProperStrand	1	chr14	79335799	79335852	protein_coding	1300010F03Rik	intron	ENSMUSG00000058997	NonProperStrand	66	1	-inf
chr11	53367173	53367263	LTR	RLTR14	ERV1	chr11RLTR1453367130	NonProperStrand	1	chr11	53367490	53367590	LTR	RLTR14	ERV1	chr11RLTR1453367467	NonProperStrand	1	1	-inf
chr11	48811269	48811359	protein_coding	Olfr56	intron	ENSMUSG00000040328	NonProperStrand	34	chr11	48811006	48811106	pseudogene	Gm12186	.	ENSMUSG00000084153	ProperStrand	1	1	-inf
chr9	88474289	88474364	LTR	MT2B	ERVL	chr9MT2B88474256	ProperStrand	1	chr19	5800477	5800536	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr7	49262236	49262326	LINE	L1_Mur2	L1	chr7L1_Mur249262010	NonProperStrand	7	chr7	27171642	27171742	protein_coding	Nlrp9c	intron	ENSMUSG00000040614	ProperStrand	47	1	-16.9857
mmu-miR-106b-5p	0	21	miRNA	mmu-miR-106b-5p	.	mmu-miR-106b-5p	ProperStrand	2	chr12	54860701	54860840	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	1	-17.8398
chr11	73083465	73083566	protein_coding	Trpv3	intron	ENSMUSG00000043029	NonProperStrand	6	chr14	7811060	7811150	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-14.3241
chr17	39847992	39848020	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	27683015	27683113	SINE	MIR	MIR	chr2MIR27683012	NonProperStrand	2	2	-inf
chr17	39847659	39847714	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	10394637	10394720	protein_coding	Nt5c1b	intron	ENSMUSG00000020622	ProperStrand	2	1	-5.4040
chr10	128717601	128717651	LINE	L1Md_F3	L1	chr10L1Md_F3128716103	NonProperStrand	2	chr3	152222227	152222893	protein_coding	Ak5	intron	ENSMUSG00000039058	NonProperStrand	72	1	-19.3454
chr17	39848117	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	4751161	4751527	protein_coding	Spnb3	exon	ENSMUSG00000067889	ProperStrand	17	1	-3.6758
chrX	102450896	102450996	LINE	L1Md_T	L1	chrXL1Md_T102444633	ProperStrand	7	chrX	102451075	102451165	LINE	MusHAL1	L1	chrXMusHAL1102450995	ProperStrand	1	1	-inf
chr6	3201470	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	25327569	25327622	protein_coding	2310033E01Rik	intron	ENSMUSG00000011632	NonProperStrand	19	1	-5.0638
chr11	62389049	62389139	protein_coding-noncoding	Trpv2	utr5	ENSMUSG00000018507	NonProperStrand	4	chr11	62388910	62389010	protein_coding	Trpv2	intron	ENSMUSG00000018507	NonProperStrand	22	1	-21.0097
chr12	75890750	75890840	LINE	L1_Mus1	L1	chr12L1_Mus175890699	NonProperStrand	1	chr12	75890627	75890727	LINE	L1_Mus1	L1	chr12L1_Mus175890699	ProperStrand	1	1	-inf
chr19	21856634	21856718	protein_coding	Tmem2	intron	ENSMUSG00000024754	ProperStrand	11	chr11	113901594	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-13.9232
chr11	72447051	72447192	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	106	chr12	78350925	78351022	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-4.7893
chr18	33795174	33795271	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	29	chr12	77613404	77613447	SINE	B1_Mus1	Alu	chr12B1_Mus177613311	ProperStrand	1	1	-inf
chr10	123155106	123155199	protein_coding	Fam19a2	intron	ENSMUSG00000044071	NonProperStrand	176	chr13	97190561	97190617	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1034
chr6	30945601	30945691	LTR	ORR1B1-int	MaLR	chr6ORR1B1-int30945601	ProperStrand	1	chr6	30945500	30945600	LTR	ORR1B1	MaLR	chr6ORR1B130945266	ProperStrand	1	1	-inf
chr17	39847844	39847956	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	93162817	93162833	protein_coding	Ntn4	intron	ENSMUSG00000020019	NonProperStrand	1	1	-inf
chr2	144581974	144582064	protein_coding	Dtd1	intron	ENSMUSG00000027430	ProperStrand	26	chr2	144582059	144583752	pseudogene	Gm11743	.	ENSMUSG00000084306	ProperStrand	4	4	-inf
chr7	12903015	12903123	LINE	Lx8	L1	chr7Lx812903011	ProperStrand	3	chr12	86513565	86513606	protein_coding	Pgf	intron	ENSMUSG00000004791	NonProperStrand	195	3	-inf
chr15	102338468	102338650	protein_coding-noncoding	Map3k12	utr3	ENSMUSG00000023050	ProperStrand	14	chr9	123461967	123462028	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr17	39847674	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	36119567	36119629	LTR	ORR1C2	MaLR	chr2ORR1C236119540	ProperStrand	1	1	-inf
chr1	122357166	122357225	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr5	121205459	121205541	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-6.7892
chr18	46497513	46497590	LTR	ORR1A3	MaLR	chr18ORR1A346497361	NonProperStrand	1	chr17	39843628	39843671	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr2	33244333	33244423	LTR	ERVL-E-int	ERVL	chr2ERVL-E-int33244180	ProperStrand	6	chr2	33244006	33244106	LTR	MLT1H	MaLR	chr2MLT1H33244021	NonProperStrand	3	1	-inf
chr3	114551999	114552099	LINE	L1Md_T	L1	chr3L1Md_T114551595	ProperStrand	1	chr3	114552174	114552264	LTR	MYSERV-int	ERVK	chr3MYSERV-int114552124	ProperStrand	1	1	-inf
chr9	19658005	19658095	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr1	128846731	128846831	SINE	B3	B2	chr1B3128846721	ProperStrand	4	4	-inf
chr3	144570074	144570102	LINE	MusHAL1	L1	chr3MusHAL1144569201	ProperStrand	8	chr17	39847276	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr3	41513017	41513044	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	chr6	83188810	83188867	protein_coding	Slc4a5	intron	ENSMUSG00000068323	ProperStrand	48	1	-9.7266
chr7	36702034	36702124	LINE	Lx8	L1	chr7Lx836701985	ProperStrand	4	chr7	36714039	36714139	SINE	B3	B2	chr7B336714045	ProperStrand	1	1	-inf
chr8	72133801	72133891	SINE	B2_Mm2	B2	chr8B2_Mm272133781	NonProperStrand	1	chr8	72133516	72133616	SINE	B3	B2	chr8B372133431	ProperStrand	1	1	-inf
chr17	34123875	34123965	LINE	Lx2B	L1	chr17Lx2B34123565	NonProperStrand	1	chr17	34124076	34124176	LTR	RMER4A	ERVK	chr17RMER4A34124040	ProperStrand	1	1	-inf
chr17	29063922	29064048	antisense	Gm16191	.	ENSMUSG00000087693	NonProperStrand	13	chr9	123461959	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr9	38815884	38815934	LINE	Lx5	L1	chr9Lx538815109	ProperStrand	1	chr17	39846583	39846642	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	47056530	47056620	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	49	chr9	119422346	119422446	protein_coding	Scn5a	intron	ENSMUSG00000032511	NonProperStrand	98	1	-11.4447
chr8	76886416	76886506	LTR	RLTR20C	ERVK	chr8RLTR20C76886441	NonProperStrand	1	chr8	76886641	76886741	LTR	RLTR20C	ERVK	chr8RLTR20C76886616	NonProperStrand	1	1	-inf
chr17	31847213	31847230	SINE	B1_Mur3	Alu	chr17B1_Mur331847134	ProperStrand	5	chr10	95406813	95406942	protein_coding	Eea1	intron	ENSMUSG00000036499	NonProperStrand	56	1	-17.3674
chr11	93951960	93951985	protein_coding	Spag9	exon	ENSMUSG00000020859	NonProperStrand	74	chr17	35162982	35164802	protein_coding	Ng23	exon	ENSMUSG00000036185	ProperStrand	4	1	-17.3233
chr17	39847439	39847495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	3692661	3692707	protein_coding	Fcer2a	intron	ENSMUSG00000005540	NonProperStrand	4	1	-3.7035
chr2	59218634	59218674	LINE	L1MA6	L1	chr2L1MA659218136	ProperStrand	5	chr2	59221450	59221541	lincRNA	5330411J11Rik	exon	ENSMUSG00000087455	NonProperStrand	31	1	-18.5741
chr3	33332833	33332923	LINE	L1M2	L1	chr3L1M233332728	NonProperStrand	1	chr3	33333120	33333220	LTR	RMER4B	ERVK	chr3RMER4B33333115	ProperStrand	1	1	-inf
chr16	55400621	55400711	LINE	L1VL4	L1	chr16L1VL455396966	ProperStrand	1	chr16	55400851	55400951	SINE	B3	B2	chr16B355400829	ProperStrand	1	1	-inf
chr13	35425011	35425101	LINE	L1MA5A	L1	chr13L1MA5A35424824	ProperStrand	1	chr13	35425449	35425549	LINE	L1MA5A	L1	chr13L1MA5A35425186	ProperStrand	1	1	-inf
chr6	124715417	124715506	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	chr6	32946976	32947007	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	2	-12.5329
chr9	37489950	37490065	LINE	L1MA4	L1	chr9L1MA437489905	NonProperStrand	17	chr9	37491182	37491203	LINE	Lx4A	L1	chr9Lx4A37490257	NonProperStrand	13	2	-inf
chr17	34119677	34119737	LTR	MT2B	ERVL	chr17MT2B34119588	NonProperStrand	4	chr18	35839934	35839990	protein_coding	Dnajc18	intron	ENSMUSG00000024350	NonProperStrand	196	1	-15.3410
chr1	179853218	179853318	LINE	L1Md_T	L1	chr1L1Md_T179849590	NonProperStrand	2	chr1	177141638	177141728	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	2	-inf
chr17	39848165	39848304	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	21033496	21033516	LTR	RMER16-int	ERVK	chr19RMER16-int21033186	NonProperStrand	1	1	-inf
chr10	6105000	6105100	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n6104516	NonProperStrand	1	chr10	6105116	6105206	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n6105117	NonProperStrand	1	1	-inf
chr19	34986188	34986252	LINE	Lx5	L1	chr19Lx534986180	NonProperStrand	2	chr5	31177389	31177444	protein_coding-noncoding	Tmem214	utr5	ENSMUSG00000038828	NonProperStrand	14	1	-19.5799
chr17	46629271	46629328	lincRNA	Gm16736	intron	ENSMUSG00000086673	NonProperStrand	106	chr17	46591676	46591779	protein_coding	Ttbk1	intron	ENSMUSG00000015599	ProperStrand	78	2	-16.3159
chr17	39846428	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	89176108	89176160	SINE	B3	B2	chr3B389175966	NonProperStrand	2	1	-5.3533
chr17	37009831	37009901	protein_coding	Trim10	intron	ENSMUSG00000073400	ProperStrand	39	chr17	36259826	36259889	protein_coding	Gm19684	intron	ENSMUSG00000092277	NonProperStrand	6	1	-17.7868
chr17	39847840	39847990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	33823316	33824477	protein_coding	March2	utr3	ENSMUSG00000079557	ProperStrand	31	5	-4.1577
chr6	3201516	3201542	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	80183991	80184007	protein_coding	5730455P16Rik	intron	ENSMUSG00000057181	ProperStrand	2	1	-10.1342
chr5	129521160	129521250	LTR	RMER4B	ERVK	chr5RMER4B129520738	ProperStrand	4	chr5	129521310	129521410	SINE	B1_Mus1	Alu	chr5B1_Mus1129521250	ProperStrand	1	1	-inf
chr16	15375636	15375736	LINE	L1_Mus1	L1	chr16L1_Mus115374485	ProperStrand	1	chr16	5471560	5471650	LTR	ORR1E	MaLR	chr16ORR1E5471510	ProperStrand	1	1	-inf
chr1	188582280	188582370	LINE	HAL1-2a_MD	L1	chr1HAL1-2a_MD188582253	ProperStrand	1	chr1	188581999	188582099	LTR	MTE2a	MaLR	chr1MTE2a188582009	NonProperStrand	1	1	-inf
chr4	67455202	67455302	LINE	L1_Mus1	L1	chr4L1_Mus167455166	ProperStrand	1	chr4	67454734	67454824	Low_complexity	GA-rich	Low_complexity	chr4GA-rich67454676	ProperStrand	1	1	-inf
chrX	116287157	116287178	LTR	IAPLTR2_Mm	ERVK	chrXIAPLTR2_Mm116286882	ProperStrand	3	chr3	31120246	31120363	protein_coding	Slc7a14	intron	ENSMUSG00000069072	NonProperStrand	43	1	-19.2039
chr10	4266501	4266631	LINE	L1_Mus3	L1	chr10L1_Mus34266383	ProperStrand	20	chr3	31458682	31458699	LINE	L1Md_F2	L1	chr3L1Md_F231458416	NonProperStrand	2	1	-20.0050
chr4	142191905	142192001	SINE	B4	B4	chr4B4142191884	NonProperStrand	3	chr4	142194186	142194230	SINE	MIR	MIR	chr4MIR142194190	ProperStrand	7	1	-25.2264
chr19	6909839	6909905	protein_coding	Rps6ka4	intron	ENSMUSG00000024952	NonProperStrand	6	chr11	88567397	88567478	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-10.9957
chr10	44391001	44391091	LTR	RLTR11A2	ERVK	chr10RLTR11A244390616	ProperStrand	5	chr9	57595892	57595992	protein_coding	Edc3	intron	ENSMUSG00000038957	ProperStrand	18	1	-20.3145
chr11	70884909	70887076	LTR	IAP-d-int	ERVK	chr11IAP-d-int70884089	ProperStrand	1	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-inf
chrX	102186430	102186446	LINE	L1_Mus1	L1	chrXL1_Mus1102185986	ProperStrand	15	chr17	79849542	79849635	Simple_repeat	(TAGA)n	Simple_repeat	chr17(TAGA)n79849460	NonProperStrand	1	1	-inf
chr5	33667144	33668039	LTR	MT2A	ERVL	chr5MT2A33667937	ProperStrand	2	chr5	33667065	33667155	LTR	RMER10A	ERVL	chr5RMER10A33666989	NonProperStrand	1	1	-inf
chr11	48865435	48865451	protein_coding	Olfr56	intron	ENSMUSG00000040328	NonProperStrand	34	chr16	55889705	55889780	protein_coding	Fam55c	intron	ENSMUSG00000075033	ProperStrand	14	1	-16.1294
chrX	106194371	106194472	LINE	Lx8	L1	chrXLx8106194372	NonProperStrand	35	chr15	62128274	62128364	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	1	-7.2921
chr17	39847440	39847458	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	142158356	142158433	SINE	B4	B4	chr4B4142158228	ProperStrand	2	1	-5.4040
chr17	39847341	39848074	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	82955218	82955418	protein_coding	Aldh1l2	exon	ENSMUSG00000020256	ProperStrand	30	10	-13.1073
chr17	39847223	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	10906558	10906580	SINE	MIR	MIR	chrXMIR10906554	NonProperStrand	1	1	-inf
chr12	6932157	6932175	LINE	L1_Mus3	L1	chr12L1_Mus36932159	ProperStrand	1	chr11	50879635	50879723	protein_coding	Zfp354a	intron	ENSMUSG00000020364	NonProperStrand	5	1	-inf
chr17	39846863	39847888	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	31632029	31632122	LTR	MuRRS-int	ERV1	chr5MuRRS-int31631809	ProperStrand	1	1	-inf
chr1	164733006	164733096	protein_coding-noncoding	Fmo4	utr3	ENSMUSG00000026692	ProperStrand	1	chr1	164732615	164732715	protein_coding	Fmo4	intron	ENSMUSG00000026692	ProperStrand	1	1	-inf
chr10	105785033	105785071	LINE	L1Md_F2	L1	chr10L1Md_F2105784723	NonProperStrand	1	chr1	179257969	179258026	LTR	MTEa	MaLR	chr1MTEa179257948	ProperStrand	1	1	-inf
chr11	8597866	8597966	LINE	L1M4c	L1	chr11L1M4c8597811	ProperStrand	2	chr11	8597973	8598063	LINE	L1M4c	L1	chr11L1M4c8597942	ProperStrand	2	2	-inf
chr11	107559144	107559234	LTR	ORR1E	MaLR	chr11ORR1E107559136	ProperStrand	1	chr11	107559341	107559441	LTR	ORR1E	MaLR	chr11ORR1E107559334	ProperStrand	1	1	-inf
chr5	30060672	30060763	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	chr5	67793341	67793443	protein_coding	Bend4	intron	ENSMUSG00000092060	ProperStrand	30	2	-inf
chr17	17192469	17192559	LINE	L1Md_F2	L1	chr17L1Md_F217191234	NonProperStrand	1	chrX	103473873	103473973	LINE	L1Md_F2	L1	chrXL1Md_F2103473684	NonProperStrand	19	1	-inf
chr15	36608563	36608638	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	83	chr9	118674950	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.3359
chr1	150583247	150583265	LINE	L1Md_F3	L1	chr1L1Md_F3150582814	NonProperStrand	2	chr17	71617511	71617623	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	137	2	-inf
chr3	41645842	41645900	LINE	L1_Mus4	L1	chr3L1_Mus441645538	ProperStrand	1	chr3	41645142	41645184	LTR	ORR1B1	MaLR	chr3ORR1B141644921	ProperStrand	1	1	-inf
chr5	45811127	45811227	Other	RMER1A	Other	chr5RMER1A45810675	NonProperStrand	1	chr5	45810545	45810635	SINE	B3A	B2	chr5B3A45810507	NonProperStrand	1	1	-inf
chr3	86138792	86138858	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.0945
chr9	90101526	90101551	protein_coding	Tbc1d2b	intron	ENSMUSG00000037410	ProperStrand	44	chr4	119115318	119115443	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-8.3544
chr13	71958633	71958649	LINE	L1_Mus1	L1	chr13L1_Mus171958564	NonProperStrand	1	chr13	112578179	112578277	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr13	68005755	68005845	LINE	L1MA6	L1	chr13L1MA668005507	ProperStrand	1	chr13	68291318	68291418	LTR	RMER16-int	ERVK	chr13RMER16-int68291299	ProperStrand	1	1	-inf
chr8	87218969	87219059	protein_coding-noncoding	Trmt1	utr5	ENSMUSG00000001909	ProperStrand	1	chr8	87219093	87219193	protein_coding	Trmt1	utr5	ENSMUSG00000001909	ProperStrand	2	1	-inf
chr14	59625287	59625368	LINE	Lx5	L1	chr14Lx559624390	ProperStrand	1	chr17	39846587	39846661	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	152567426	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	85	chr14	45473888	45473942	protein_coding	Ptgdr	intron	ENSMUSG00000071489	ProperStrand	4	1	-17.0132
chr17	39847673	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	67440468	67442333	SINE	B1_Mus2	Alu	chr18B1_Mus267440477	NonProperStrand	2	1	-5.4040
chr9	17987800	17987838	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr4	119226447	119226475	pseudogene	Gm12959	.	ENSMUSG00000081678	ProperStrand	1	1	-inf
chr2	103586243	103586272	protein_coding	Nat10	intron	ENSMUSG00000027185	NonProperStrand	54	chr8	101986134	101986152	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-12.2690
chr8	114909708	114909798	LTR	ORR1C2	MaLR	chr8ORR1C2114909596	NonProperStrand	2	chr8	114909851	114909951	LTR	ORR1C2	MaLR	chr8ORR1C2114909852	NonProperStrand	2	2	-inf
chr17	39845138	39845625	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr5	146261240	146261277	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	2	-3.1750
chr3	86860823	86860890	LTR	MTD	MaLR	chr3MTD86860786	ProperStrand	1	chr3	86860952	86861039	Simple_repeat	(TCTCCC)n	Simple_repeat	chr3(TCTCCC)n86860957	NonProperStrand	2	1	-inf
chr18	84854785	84854834	protein_coding	Cndp2	intron	ENSMUSG00000024644	NonProperStrand	19	chr11	20479777	20479836	protein_coding	Sertad2	intron	ENSMUSG00000049800	ProperStrand	32	1	-15.6187
chr17	39847277	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	81663496	81663593	protein_coding	Galntl1	intron	ENSMUSG00000021130	ProperStrand	7	1	-3.6430
chr6	112538584	112538684	LINE	L1_Mus2	L1	chr6L1_Mus2112538556	ProperStrand	1	chr7	47188513	47188603	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	1	-inf
chr11	109011732	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	146261265	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	2	-4.0007
chr5	53585879	53585949	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	chr12	110695156	110695236	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-7.4477
chr9	123461802	123462171	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	91766590	91767081	protein_coding	Chrm4	intron	ENSMUSG00000040495	ProperStrand	12	4	-13.6750
chr1	119052680	119052876	LINE	L1Md_F2	L1	chr1L1Md_F2119052665	ProperStrand	4	chr1	119053012	119053620	LINE	Lx7	L1	chr1Lx7119052948	ProperStrand	4	4	-inf
chr7	17035891	17037159	LTR	RMER16-int	ERVK	chr7RMER16-int17035534	NonProperStrand	9	chr7	17037214	17039646	protein_coding	Tmem160	intron	ENSMUSG00000019158	NonProperStrand	9	9	-inf
chrX	24619019	24619109	LTR	RLTR22_Mur	ERVK	chrXRLTR22_Mur24618785	ProperStrand	1	chrX	24618711	24618811	Simple_repeat	(TAG)n	Simple_repeat	chrX(TAG)n24618680	NonProperStrand	1	1	-inf
chr17	50420133	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr1	136719343	136719450	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-8.2352
chr9	69358296	69358337	LTR	MLT1A	MaLR	chr9MLT1A69358278	ProperStrand	1	chr17	85977434	85977492	Simple_repeat	(CA)n	Simple_repeat	chr17(CA)n85977421	NonProperStrand	1	1	-inf
chr12	40626361	40626388	LINE	L1Md_A	L1	chr12L1Md_A40626114	ProperStrand	1	chr17	39847489	39847526	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	102058022	102070004	LTR	MLT1F1	MaLR	chr2MLT1F1102069936	ProperStrand	12	chr2	102057859	102057959	LTR	ORR1D1	MaLR	chr2ORR1D1102057712	NonProperStrand	5	5	-inf
chr6	39691324	39691382	LINE	Lx6	L1	chr6Lx639690965	ProperStrand	2	chr6	39689727	39689785	LTR	RLTR45	ERVK	chr6RLTR4539689470	ProperStrand	3	2	-inf
chr8	70774962	70775052	LTR	MTB_Mm	MaLR	chr8MTB_Mm70774954	NonProperStrand	2	chr8	70774842	70774942	LTR	MTE2a	MaLR	chr8MTE2a70774869	NonProperStrand	1	1	-inf
chr17	39847763	39847850	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	38496762	38496811	SINE	B2_Mm2	B2	chr6B2_Mm238496640	ProperStrand	1	1	-inf
chr11	52270466	52270566	SINE	ID_B1	B4	chr11ID_B152270395	NonProperStrand	6	chr11	52270616	52270706	Simple_repeat	(CAAA)n	Simple_repeat	chr11(CAAA)n52270602	NonProperStrand	5	5	-inf
chr14	118600979	118601051	LTR	MLT1C	MaLR	chr14MLT1C118600917	NonProperStrand	1	chr17	39846914	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	137814236	137814336	LTR	MLT1E2	MaLR	chr2MLT1E2137814098	NonProperStrand	1	chr2	137813490	137813580	Simple_repeat	(TC)n	Simple_repeat	chr2(TC)n137813468	ProperStrand	1	1	-inf
chr12	70266545	70266645	LTR	RMER4A	ERVK	chr12RMER4A70266535	ProperStrand	2	chr12	70267119	70267209	SINE	B1_Mus1	Alu	chr12B1_Mus170267056	ProperStrand	1	1	-inf
chr17	39847844	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	56046966	56046996	LTR	MurERV4_19-int	ERVK	chr17MurERV4_19-int56046754	ProperStrand	4	1	-3.7035
chr4	77564008	77564098	protein_coding-noncoding	Ptprd	utr3	ENSMUSG00000028399	NonProperStrand	1	chr4	77564454	77564554	protein_coding	Ptprd	intron	ENSMUSG00000028399	NonProperStrand	48	1	-inf
chr8	13946375	13946475	LTR	MT2A	ERVL	chr8MT2A13946368	ProperStrand	4	chr8	13946270	13946360	LTR	MTEa	MaLR	chr8MTEa13946284	ProperStrand	4	4	-inf
chr2	22744862	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	103339764	103339808	lincRNA	5830418P13Rik	intron	ENSMUSG00000086236	ProperStrand	54	1	-7.0178
chr8	64719140	64720358	LINE	L1M2	L1	chr8L1M264718765	NonProperStrand	1	chr1	75197798	75197841	protein_coding	Glb1l	exon	ENSMUSG00000026200	NonProperStrand	13	1	-inf
chr10	55596350	55596440	LINE	L2a	L2	chr10L2a55595303	ProperStrand	1	chr10	55596616	55596716	LINE	L2a	L2	chr10L2a55596571	ProperStrand	1	1	-inf
chr13	64750263	64750363	LINE	L1Md_T	L1	chr13L1Md_T64743956	ProperStrand	1	chr13	64750686	64750776	LTR	RMER6C	ERVK	chr13RMER6C64750627	ProperStrand	1	1	-inf
chr13	97492017	97492198	LINE	L1_Rod	L1	chr13L1_Rod97492007	NonProperStrand	7	chr17	39847660	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-4.7560
chr6	28746006	28746068	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr7	116224526	116224590	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-5.3974
chr18	77056029	77056103	LTR	MTE2b	MaLR	chr18MTE2b77056050	ProperStrand	1	chr11	48802315	48802370	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-inf
chr12	85345461	85345559	LINE	L1M2	L1	chr12L1M285345376	NonProperStrand	1	chr9	123462082	123462134	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	122357178	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr2	3410873	3410892	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-10.9382
chr7	5097638	5097708	LINE	L1_Mur2	L1	chr7L1_Mur25096984	ProperStrand	3	chr13	97190561	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr2	32760666	32761521	protein_coding	Fam129b	intron	ENSMUSG00000026796	ProperStrand	30	chr2	52111891	52111950	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	1	-11.7659
chr9	102913311	102913401	protein_coding	Slco2a1	intron	ENSMUSG00000032548	ProperStrand	18	chr3	40702830	40702930	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	NonProperStrand	16	2	-inf
chr14	67880697	68044935	protein_coding	Ebf2	intron	ENSMUSG00000022053	NonProperStrand	40	chr9	123461835	123461983	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.4283
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	102129941	102130047	LTR	MTB	MaLR	chr7MTB102129712	NonProperStrand	3	1	-4.3017
chr7	23377515	23377615	LTR	MT2B2	ERVL	chr7MT2B223377540	NonProperStrand	1	chr7	23377260	23377350	SINE	B3	B2	chr7B323377225	ProperStrand	1	1	-inf
chr15	103351869	103351954	protein_coding	Pde1b	intron	ENSMUSG00000022489	NonProperStrand	30	chr16	36830669	36830704	protein_coding	Iqcb1	intron	ENSMUSG00000022837	ProperStrand	13	1	-16.5651
chr10	78412920	78412952	SINE	B3	B2	chr10B378412893	NonProperStrand	1	chr4	150246753	150247478	SINE	B1F	Alu	chr4B1F150247442	NonProperStrand	4	1	-inf
chr1	64691909	64691953	LINE	Lx5	L1	chr1Lx564691508	ProperStrand	1	chr7	30624504	30624580	protein_coding	Zfp940	intron	ENSMUSG00000050855	ProperStrand	13	1	-inf
chr14	33237002	33237106	protein_coding	Chat	intron	ENSMUSG00000021919	NonProperStrand	10	chr9	123462089	123462113	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr7	47188473	47188514	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr12	71206025	71206103	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	1	-11.4085
chr14	19278152	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr9	107174021	107174082	protein_coding	Mapkapk3	intron	ENSMUSG00000032577	ProperStrand	2	1	-19.0294
chr17	74742974	74747655	protein_coding	Spast	intron	ENSMUSG00000024068	ProperStrand	20	chr18	77135300	77135357	protein_coding	Skor2	intron	ENSMUSG00000091519	ProperStrand	55	1	-14.4278
chr18	27420337	27420427	LINE	L1_Mus2	L1	chr18L1_Mus227420303	NonProperStrand	1	chr18	27420165	27420264	Simple_repeat	(GAAA)n	Simple_repeat	chr18(GAAA)n27420158	NonProperStrand	1	1	-inf
chr1	182867066	182867166	protein_coding-noncoding	Lefty1	utr5	ENSMUSG00000038793	ProperStrand	1	chr1	182866990	182867080	protein_coding	Lefty1	intron	ENSMUSG00000038793	ProperStrand	18	1	-inf
chrX	114434416	114434506	LTR	RMER16-int	ERVK	chrXRMER16-int114433907	NonProperStrand	1	chrX	114434726	114434826	LTR	RMER16-int	ERVK	chrXRMER16-int114434608	NonProperStrand	1	1	-inf
chr9	123461945	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr10	81081434	81081614	protein_coding	BC025920	intron	ENSMUSG00000074862	NonProperStrand	2	1	-8.0983
chrX	102395578	102395678	LINE	L1Md_F2	L1	chrXL1Md_F2102395095	ProperStrand	1	chrX	102395809	102395899	LINE	Lx9	L1	chrXLx9102395819	ProperStrand	1	1	-inf
chr13	97483796	97483853	LINE	Lx3_Mus	L1	chr13Lx3_Mus97483390	NonProperStrand	2	chr6	65886301	65886325	protein_coding	Prdm5	utr3	ENSMUSG00000029913	ProperStrand	205	1	-17.0158
chr12	64835019	64835109	SINE	B1_Mus2	Alu	chr12B1_Mus264835033	NonProperStrand	1	chr12	64835221	64835321	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n64835231	ProperStrand	1	1	-inf
chr17	39846818	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	137526572	137526599	SINE	B2_Mm2	B2	chr5B2_Mm2137526413	NonProperStrand	2	1	-5.3533
chr14	122270130	122270178	LTR	MLT2D	ERVL	chr14MLT2D122270094	NonProperStrand	2	chr14	122272369	122272427	SINE	PB1D10	Alu	chr14PB1D10122272373	ProperStrand	1	1	-inf
chr2	167620571	167620661	LINE	L1MD	L1	chr2L1MD167620569	NonProperStrand	3	chr2	167620466	167620566	SINE	RSINE1	B4	chr2RSINE1167620430	NonProperStrand	3	3	-inf
chr12	110408402	110408502	LINE	L1Md_F3	L1	chr12L1Md_F3110407259	NonProperStrand	2	chr12	110408541	110408631	LINE	L1Md_F3	L1	chr12L1Md_F3110408480	NonProperStrand	2	2	-inf
chr15	41766436	41766536	LTR	RMER17A-int	ERVK	chr15RMER17A-int41766402	NonProperStrand	1	chr15	41766334	41766424	LTR	RMER17A2	ERVK	chr15RMER17A241765499	NonProperStrand	1	1	-inf
chr1	157716163	157716180	protein_coding	Cep350	intron	ENSMUSG00000033671	NonProperStrand	3	chr13	97190554	97190581	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr4	52517150	52517240	LINE	Lx8	L1	chr4Lx852517132	ProperStrand	1	chr4	52517025	52517125	SINE	B1_Mur2	Alu	chr4B1_Mur252516977	NonProperStrand	1	1	-inf
chr17	39848248	39848347	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	129133966	129134056	protein_coding	Il1a	intron	ENSMUSG00000027399	NonProperStrand	5	1	-6.1691
chr1	42504641	42504661	LTR	MER21B	ERV1	chr1MER21B42504434	ProperStrand	1	chr9	59486058	59486157	protein_coding	Parp6	intron	ENSMUSG00000025237	NonProperStrand	38	1	-inf
chrX	155335634	155335721	LINE	L1Md_F2	L1	chrXL1Md_F2155332049	NonProperStrand	3	chr8	127550990	127551054	protein_coding	Tsnax	intron	ENSMUSG00000056820	ProperStrand	11	1	-inf
chr6	67267114	67294165	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr9	123461817	123462156	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	10	-6.8504
chr14	21541339	21541367	protein_coding	2310021P13Rik	intron	ENSMUSG00000021819	ProperStrand	60	chr14	21543818	21543893	protein_coding	Ndst2	intron	ENSMUSG00000039308	NonProperStrand	56	1	-12.1619
chr6	113719098	113719196	protein_coding	Atp2b2	intron	ENSMUSG00000030302	NonProperStrand	82	chr6	124868172	124868225	protein_coding	A230083G16Rik	intron	ENSMUSG00000055818	ProperStrand	3	1	-17.9009
chr13	62297432	62297517	LINE	L1_Mus1	L1	chr13L1_Mus162296297	ProperStrand	1	chr13	62284398	62284438	SINE	B3	B2	chr13B362284360	ProperStrand	1	1	-inf
chr5	146236126	146236216	LTR	RLTR16	ERVK	chr5RLTR16146236063	NonProperStrand	3	chr19	55538685	55538785	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	1	-15.3619
chr3	37453969	37454008	protein_coding	Spata5	intron	ENSMUSG00000027722	ProperStrand	28	chr14	11643809	11643928	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-9.4073
chr17	39847767	39847857	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	103803006	103803106	protein_coding	Lmo2	intron	ENSMUSG00000032698	ProperStrand	1	1	-inf
chr17	39847551	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	27738513	27738593	SINE	B4A	B4	chr7B4A27738416	ProperStrand	1	1	-inf
chr17	39846300	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	24	-8.2972
chr15	80180438	80180528	protein_coding	Cacna1i	intron	ENSMUSG00000022416	ProperStrand	114	chr2	5426573	5426673	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.3473
chr14	14766857	14766888	antisense	Gm11100	.	ENSMUSG00000079357	ProperStrand	10	chr2	164424866	164424947	protein_coding	Wfdc8	intron	ENSMUSG00000070533	ProperStrand	51	1	-16.0382
mmu-miR-96-5p	0	23	miRNA	mmu-miR-96-5p	.	mmu-miR-96-5p	ProperStrand	1	chrX	106202569	106202869	protein_coding	Hmgn5	intron	ENSMUSG00000031245	NonProperStrand	68	1	-inf
chr15	85874980	85875080	SINE	B1_Mur2	Alu	chr15B1_Mur285874994	ProperStrand	7	chr15	85874895	85874985	Simple_repeat	(GGAAA)n	Simple_repeat	chr15(GGAAA)n85874874	ProperStrand	7	7	-inf
chr13	115078909	115078974	protein_coding	Ndufs4	utr3	ENSMUSG00000021764	ProperStrand	22	chr8	13344482	13344544	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	1	-11.3428
chr10	84528137	84528227	LINE	L1_Mur3	L1	chr10L1_Mur384526972	ProperStrand	28	chr6	147061222	147061322	protein_coding	Klhdc5	utr3	ENSMUSG00000040102	ProperStrand	12	1	-16.8682
chrX	51193917	51193937	DNA	MER5A1	MER1_type	chrXMER5A151193836	ProperStrand	2	chrX	51192005	51192139	LTR	MTE2b	MaLR	chrXMTE2b51191978	NonProperStrand	2	2	-inf
chr13	102847966	102848013	LINE	L1MC3	L1	chr13L1MC3102847945	NonProperStrand	2	chr17	39847843	39847900	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr2	79519540	79519630	LTR	MLT1G1	MaLR	chr2MLT1G179519411	ProperStrand	1	chr2	73462186	73462286	protein_coding	Chn1	intron	ENSMUSG00000056486	NonProperStrand	7	1	-inf
chr12	111551750	111551850	LINE	L1_Mur2	L1	chr12L1_Mur2111550463	NonProperStrand	1	chr12	111551993	111552083	LINE	L1_Mur2	L1	chr12L1_Mur2111551882	NonProperStrand	1	1	-inf
chr11	79411621	79411693	protein_coding	Rab11fip4	intron	ENSMUSG00000017639	ProperStrand	32	chr11	79340009	79384202	protein_coding	Nf1	intron	ENSMUSG00000020716	ProperStrand	21	1	-15.4234
chrX	113069283	113069346	LINE	L1Md_F3	L1	chrXL1Md_F3113068778	ProperStrand	1	chr17	39847445	39847498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	4133685	4133785	LINE	Lx9	L1	chr15Lx94133713	NonProperStrand	1	chr15	4133559	4133649	Simple_repeat	(TA)n	Simple_repeat	chr15(TA)n4133548	ProperStrand	1	1	-inf
chr13	88867198	88867298	LINE	L1VL4	L1	chr13L1VL488865782	NonProperStrand	1	chr13	88867390	88867481	SINE	B1_Mus2	Alu	chr13B1_Mus288867346	NonProperStrand	1	1	-inf
chr10	20192103	20192176	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr11	51171493	51171527	protein_coding	Col23a1	intron	ENSMUSG00000063564	NonProperStrand	66	1	-8.5304
chr6	3201437	3201557	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	146527271	146527294	protein_coding	Gm13139	intron	ENSMUSG00000067916	ProperStrand	23	1	-4.6887
chr2	160998847	160998937	LTR	RLTR45	ERVK	chr2RLTR45160998501	NonProperStrand	1	chr2	161007419	161007519	lincRNA	Gm14243	intron	ENSMUSG00000067745	NonProperStrand	16	1	-inf
chr14	27323490	27323616	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr9	59389620	59389639	protein_coding	Hexa	intron	ENSMUSG00000025232	NonProperStrand	14	1	-12.6623
chr11	109011644	109011701	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	69890651	69890725	LTR	IAP-d-int	ERVK	chr8IAP-d-int69889537	NonProperStrand	2	1	-13.5345
chr13	92922808	92922908	LINE	L1Md_F2	L1	chr13L1Md_F292922805	NonProperStrand	1	chr13	92922437	92922528	LINE	Lx9	L1	chr13Lx992922096	ProperStrand	1	1	-inf
chr14	30828101	30828182	protein_coding	Chdh	intron	ENSMUSG00000015970	ProperStrand	75	chr2	58792146	58792166	protein_coding	Ccdc148	intron	ENSMUSG00000036641	ProperStrand	8	1	-15.7176
chr17	39847743	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	100429818	100429903	protein_coding-noncoding	Ttc25	utr5	ENSMUSG00000006784	NonProperStrand	2	1	-5.4040
chr3	88360530	88360586	protein_coding	Ubqln4	intron	ENSMUSG00000008604	ProperStrand	29	chr3	67251498	67251584	protein_coding	Gfm1	intron	ENSMUSG00000027774	ProperStrand	14	1	-16.4189
chr17	39846660	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	79669602	79669651	Simple_repeat	(T)n	Simple_repeat	chr10(T)n79669598	ProperStrand	1	1	-inf
chr11	23399622	23399640	lincRNA	1700030C12Rik	exon	ENSMUSG00000086459	NonProperStrand	1	chr6	94217474	94217617	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-inf
chr5	118593525	118680942	protein_coding	Rnft2	intron	ENSMUSG00000032850	NonProperStrand	136	chr5	118593437	118593527	protein_coding	Fbxw8	intron	ENSMUSG00000032867	NonProperStrand	108	4	-20.3472
chr5	131710938	131711028	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	chr11	74817400	74817500	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	3	-15.5612
chr15	55117570	55117670	SINE	PB1D7	Alu	chr15PB1D755117536	ProperStrand	1	chr15	55117361	55117451	SINE	RSINE1	B4	chr15RSINE155117324	ProperStrand	1	1	-inf
chr17	39846847	39846912	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	144883517	144883538	Simple_repeat	(CAAA)n	Simple_repeat	chrX(CAAA)n144883512	ProperStrand	4	1	-3.6552
chr11	86940226	86940335	antisense	Gm11491	.	ENSMUSG00000085310	ProperStrand	5	chr4	108859081	108859132	protein_coding	Osbpl9	intron	ENSMUSG00000028559	NonProperStrand	31	1	-18.5741
chr11	117233158	117233258	LTR	RMER17A	ERVK	chr11RMER17A117232794	NonProperStrand	2	chr11	117233826	117233916	SINE	PB1D10	Alu	chr11PB1D10117233848	ProperStrand	1	1	-inf
chr7	70047175	70047192	LINE	Lx5	L1	chr7Lx570045333	NonProperStrand	1	chr13	44869578	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr14	75847902	75847969	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr17	39842997	39843066	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	1	-6.7565
chr6	65894956	65895046	LINE	Lx6	L1	chr6Lx665894313	ProperStrand	1	chr6	65895037	65895137	LINE	Lx6	L1	chr6Lx665895034	ProperStrand	1	1	-inf
chr6	43720811	43720830	SINE	ID4_	ID	chr6ID4_43720763	ProperStrand	1	chr7	134817535	134817622	protein_coding	Bcl7c	intron	ENSMUSG00000030814	NonProperStrand	23	1	-inf
chr7	99479420	99479468	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	chr2	104042930	104042982	protein_coding	D430041D05Rik	intron	ENSMUSG00000068373	NonProperStrand	21	1	-9.5426
chr17	39846462	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	12925541	12925588	SINE	B2_Mm2	B2	chr7B2_Mm212925550	NonProperStrand	3	1	-4.3017
chr4	100979777	100979798	lincRNA	Gm12796	intron	ENSMUSG00000085721	ProperStrand	2	chr16	18508786	18508914	protein_coding	Gnb1l	intron	ENSMUSG00000000884	ProperStrand	89	1	-18.4571
chr16	20679627	20679756	protein_coding	Eif4g1	exon	ENSMUSG00000045983	ProperStrand	123	chr1	106724367	106724384	protein_coding	Cdh20	intron	ENSMUSG00000050840	ProperStrand	3	1	-17.0054
chr8	3643456	3643518	protein_coding	Stxbp2	utr3	ENSMUSG00000004626	NonProperStrand	3	chr4	126412523	126412586	protein_coding	Tfap2e	exon	ENSMUSG00000042477	ProperStrand	2	1	-20.2824
chr2	92353598	92353729	lincRNA	Gm13814	intron	ENSMUSG00000085261	ProperStrand	42	chr5	92347888	92348098	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	220	2	-16.0158
chr15	69072475	69072575	LINE	MusHAL1	L1	chr15MusHAL169072119	NonProperStrand	1	chr16	45320757	45320847	LINE	L1Md_F2	L1	chr16L1Md_F245319559	NonProperStrand	1	1	-inf
chr2	20750275	20750391	SINE	B1_Mus1	Alu	chr2B1_Mus120750240	ProperStrand	1	chr7	117509847	117509881	protein_coding	Sbf2	intron	ENSMUSG00000038371	NonProperStrand	46	1	-inf
chr7	19090159	19090254	LINE	L1Md_F2	L1	chr7L1Md_F219086896	ProperStrand	1	chr2	5379297	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr2	70742773	70742799	LTR	ORR1B1	MaLR	chr2ORR1B170742778	NonProperStrand	1	chr2	70742604	70742728	Other	RMER1C	Other	chr2RMER1C70742626	ProperStrand	1	1	-inf
chr17	39846921	39846984	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	114370326	114370397	SINE	B1_Mus2	Alu	chr5B1_Mus2114370306	NonProperStrand	1	1	-inf
chr16	13270116	13270246	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	chr16	30308259	30308276	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-10.2120
chr17	4082172	4082248	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr17	5858462	5858529	protein_coding	Snx9	intron	ENSMUSG00000002365	ProperStrand	5	1	-12.8185
chr16	33524189	33524251	protein_coding	Slc12a8	intron	ENSMUSG00000035506	ProperStrand	102	chr14	11928133	11928153	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-6.8182
chr4	114873784	114873884	LINE	L1Md_F2	L1	chr4L1Md_F2114873258	ProperStrand	1	chr4	45379161	45379251	protein_coding	Dcaf10	intron	ENSMUSG00000035572	NonProperStrand	18	1	-inf
chr12	105826967	105827057	SINE	B4A	B4	chr12B4A105826907	ProperStrand	3	chr12	105828285	105829060	SINE	B4A	B4	chr12B4A105828237	ProperStrand	4	3	-inf
chr5	146261268	146261316	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr9	22572931	22572989	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	126	1	-6.4052
chr17	34850992	34852552	protein_coding	Tnxb	intron	ENSMUSG00000033327	ProperStrand	16	chr1	38050274	38050294	protein_coding	Txndc9	intron	ENSMUSG00000058407	ProperStrand	11	1	-18.3885
chr16	30010606	30010683	lincRNA	4632428C04Rik	intron	ENSMUSG00000086897	ProperStrand	7	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.9733
chr11	109011738	109011765	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr6	49263147	49263184	LTR	RMER16-int	ERVK	chr6RMER16-int49263089	NonProperStrand	9	1	-9.9559
chr16	18240047	18247409	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	38	chr9	123461931	123462150	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	4	-7.5996
chr7	100503040	100503122	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int100500000	ProperStrand	2	chr9	59667388	59667421	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-13.7270
chr3	49386409	49386509	LINE	Lx2B	L1	chr3Lx2B49386383	ProperStrand	1	chr3	49386201	49386291	LINE	Lx7	L1	chr3Lx749385458	ProperStrand	1	1	-inf
chr17	39847041	39847180	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	8928914	8928930	SINE	B1_Mur4	Alu	chr19B1_Mur48928865	ProperStrand	1	1	-inf
chr11	73495155	73495177	LINE	L1Md_F2	L1	chr11L1Md_F273494673	NonProperStrand	2	chr17	39847767	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr3	81116793	81116861	LINE	L1Md_A	L1	chr3L1Md_A81112589	NonProperStrand	2	chr17	39847082	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr7	121698588	121698649	protein_coding	Cyp2r1	intron	ENSMUSG00000030670	ProperStrand	5	chr7	121682696	121682777	protein_coding	Pde3b	utr3	ENSMUSG00000030671	NonProperStrand	24	1	-19.6066
chr17	39846453	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	13655542	13655576	LTR	ORR1D1-int	MaLR	chr1ORR1D1-int13654841	NonProperStrand	1	1	-inf
chr4	136771574	136771611	SINE	ID_B1	B4	chr4ID_B1136771512	NonProperStrand	2	chr4	136774622	136835868	protein_coding	Wnt4	intron	ENSMUSG00000036856	NonProperStrand	11	1	-21.2279
chr19	33117126	33117179	LINE	L1MA5A	L1	chr19L1MA5A33115732	NonProperStrand	10	chr19	5665289	5665361	protein_coding-noncoding	Pcnxl3	utr3	ENSMUSG00000054874	ProperStrand	1	1	-inf
chr6	143070873	143070971	LINE	L1Md_F2	L1	chr6L1Md_F2143070634	ProperStrand	2	chr17	39847207	39847253	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr5	121205006	121205145	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	chr8	68721800	68721818	protein_coding	March1	intron	ENSMUSG00000036469	ProperStrand	80	1	-9.3093
chr8	117454971	117455661	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr18	20983224	20983258	protein_coding	Trappc8	intron	ENSMUSG00000033382	NonProperStrand	16	1	-8.7811
chr1	191918096	191918172	SINE	ID_B1	B4	chr1ID_B1191917987	NonProperStrand	1	chr5	23839502	23839581	protein_coding	Kcnh2	intron	ENSMUSG00000038319	ProperStrand	11	1	-inf
chr10	41236816	41236872	LTR	MTB	MaLR	chr10MTB41236766	NonProperStrand	1	chr17	39843840	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr5	137523879	137524049	DNA	MER44B	MER2_type	chr5MER44B137523873	NonProperStrand	4	chr5	137524043	137524143	SINE	B3A	B2	chr5B3A137524027	ProperStrand	11	4	-inf
chrX	101080156	101080250	LINE	Lx5	L1	chrXLx5101079609	NonProperStrand	1	chr5	146261276	146261337	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-inf
chr11	62604510	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr11	120913549	120913615	antisense	Gm11775	.	ENSMUSG00000086835	NonProperStrand	7	1	-17.3038
chr5	124490815	124490884	SINE	B1_Mus2	Alu	chr5B1_Mus2124490747	NonProperStrand	2	chr1	89565045	89565097	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	2	-inf
chr13	40913288	40913352	LTR	RLTR25B	ERVK	chr13RLTR25B40912884	NonProperStrand	2	chr13	40890678	40890752	LTR	RMER6C	ERVK	chr13RMER6C40890614	NonProperStrand	3	2	-inf
chr5	115490329	115490356	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.7933
chr13	55229586	55229686	protein_coding	Zfp346	intron	ENSMUSG00000021481	ProperStrand	35	chr11	33557047	33557138	protein_coding	Kcnip1	intron	ENSMUSG00000053519	NonProperStrand	100	2	-19.3576
chr13	55539416	55539481	LTR	RLTR46	ERVK	chr13RLTR4655539383	ProperStrand	2	chr2	37878788	37878849	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	1	-16.0366
chr8	104355290	104356337	LINE	L1Md_A	L1	chr8L1Md_A104356165	ProperStrand	1	chr8	104355201	104355273	LINE	Lx2B	L1	chr8Lx2B104354740	ProperStrand	2	1	-inf
chr13	6593993	6594053	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr6	51534905	51534975	protein_coding	Snx10	intron	ENSMUSG00000038301	ProperStrand	60	1	-10.7156
chr10	75097792	75097882	SINE	PB1	Alu	chr10PB175097758	NonProperStrand	1	chr1	72329337	72329437	protein_coding	Pecr	intron	ENSMUSG00000026189	NonProperStrand	5	1	-inf
chr17	39848099	39848179	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	25222421	25222451	SINE	B1_Mur4	Alu	chr2B1_Mur425222408	ProperStrand	2	1	-8.4422
chr15	99987449	99987465	protein_coding	Dip2b	intron	ENSMUSG00000023026	ProperStrand	60	chr9	118041227	118041365	protein_coding	Cmc1	intron	ENSMUSG00000039163	NonProperStrand	11	1	-15.4983
chr1	127849824	127849843	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	chr19	8888597	8888738	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	137	2	-12.2179
chr10	25365894	25365994	LTR	RLTR12A	ERVK	chr10RLTR12A25365676	NonProperStrand	1	chr10	25367285	25367375	SINE	B1F	Alu	chr10B1F25367254	ProperStrand	1	1	-inf
chr4	123408552	123408642	DNA	RMER30	MER1_type	chr4RMER30123408523	ProperStrand	1	chr4	123408430	123408530	SINE	B1_Mur3	Alu	chr4B1_Mur3123408370	NonProperStrand	1	1	-inf
chr17	39843004	39843067	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr19	4432680	4432733	protein_coding	Rhod	intron	ENSMUSG00000041845	ProperStrand	4	1	-11.0115
chr7	141439657	141439859	LINE	L1MC4	L1	chr7L1MC4141439800	NonProperStrand	3	chr7	141439883	141440060	LINE	Lx6	L1	chr7Lx6141439881	ProperStrand	4	3	-inf
chr8	109725458	109725504	SINE	B1_Mus1	Alu	chr8B1_Mus1109725463	ProperStrand	1	chr8	116667291	116667327	protein_coding	Nudt7	intron	ENSMUSG00000031767	NonProperStrand	24	1	-inf
chr2	26913049	26913250	LINE	Lx4B	L1	chr2Lx4B26913188	ProperStrand	21	chr17	23908206	23908256	protein_coding	Flywch1	intron	ENSMUSG00000040097	ProperStrand	2	1	-20.4508
chr2	156660790	156660846	antisense	Gm14230	.	ENSMUSG00000087179	NonProperStrand	5	chr16	33502181	33502268	protein_coding	Zfp148	utr3	ENSMUSG00000022811	ProperStrand	133	1	-15.6092
chr8	104904359	104904459	LINE	L1Md_F2	L1	chr8L1Md_F2104900252	ProperStrand	1	chr8	104904789	104904879	LINE	L1Md_F2	L1	chr8L1Md_F2104904549	ProperStrand	1	1	-inf
chr9	86699131	86699739	protein_coding	Snap91	intron	ENSMUSG00000033419	ProperStrand	34	chr9	56527519	56527609	protein_coding	Lingo1	intron	ENSMUSG00000049556	ProperStrand	7	1	-17.5500
chr12	110087199	110087289	LTR	MTA_Mm	MaLR	chr12MTA_Mm110087154	ProperStrand	1	chr12	110087647	110087747	SINE	B1_Mus1	Alu	chr12B1_Mus1110087599	ProperStrand	1	1	-inf
chr5	33520501	33520590	LTR	MTA_Mm	MaLR	chr5MTA_Mm33520344	NonProperStrand	42	chr5	33520733	33520771	Simple_repeat	(CATATA)n	Simple_repeat	chr5(CATATA)n33520740	NonProperStrand	2	1	-21.0495
chr4	45303549	45303639	LTR	MERVL-int	ERVL	chr4MERVL-int45303476	ProperStrand	2	chr4	45303142	45303242	LTR	MT2_Mm	ERVL	chr4MT2_Mm45302858	ProperStrand	1	1	-inf
chr8	95866830	95866934	LINE	L1Md_A	L1	chr8L1Md_A95865546	NonProperStrand	33	chr9	123461833	123462159	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-3.9328
chr17	65582595	65582648	SINE	B2_Mm2	B2	chr17B2_Mm265582571	NonProperStrand	1	chr17	39843406	39843469	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr14	120338492	120338518	LINE	L1Md_F2	L1	chr14L1Md_F2120338419	ProperStrand	2	chr15	59172869	59172885	protein_coding	E430025E21Rik	intron	ENSMUSG00000022350	NonProperStrand	2	1	-19.8939
chr6	87015232	87015286	protein_coding	Gfpt1	intron	ENSMUSG00000029992	ProperStrand	40	chr12	41190248	41190312	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-9.4553
chr1	127242797	127242887	LTR	IAPLTR1a_Mm	ERVK	chr1IAPLTR1a_Mm127242714	NonProperStrand	1	chr1	127239473	127239574	LTR	MTEa	MaLR	chr1MTEa127239423	NonProperStrand	1	1	-inf
chr11	73083469	73083542	protein_coding	Trpv3	intron	ENSMUSG00000043029	ProperStrand	34	chr8	123517179	123517235	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-8.0686
chr3	95294865	95295304	protein_coding-noncoding	Arnt	utr5	ENSMUSG00000015522	ProperStrand	10	chr3	95293704	95294821	protein_coding	Arnt	intron	ENSMUSG00000015522	ProperStrand	26	6	-21.7286
chr5	146260994	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	66734347	66734392	protein_coding	Unc80	intron	ENSMUSG00000055567	ProperStrand	34	1	-6.1779
chr17	39842997	39843067	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr18	69589193	69589214	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	1	-3.7170
chr3	56581191	56581281	SINE	B2_Mm2	B2	chr3B2_Mm256581075	NonProperStrand	1	chr3	56581301	56581401	SINE	B3A	B2	chr3B3A56581321	ProperStrand	1	1	-inf
chr17	39846580	39846657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	27521379	27521444	SINE	B1_Mur3	Alu	chr7B1_Mur327521350	NonProperStrand	1	1	-inf
chr9	100912442	100912542	protein_coding-noncoding	Pccb	utr3	ENSMUSG00000032527	ProperStrand	6	chr9	100912538	100912628	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	5	-inf
chr17	39847252	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	124745343	124745674	LTR	RMER12B	ERVK	chr6RMER12B124745187	NonProperStrand	1	1	-inf
chr6	85021382	85021501	LINE	Lx9	L1	chr6Lx985020695	NonProperStrand	1	chr7	104409309	104409326	protein_coding	Gab2	intron	ENSMUSG00000004508	ProperStrand	17	1	-inf
chr13	108214999	108215084	LINE	L1MCa	L1	chr13L1MCa108214781	NonProperStrand	12	chr5	149050621	149050669	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	98	1	-14.3281
chr1	122357188	122357228	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr4	53860736	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-6.3362
chr17	39847737	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	82991332	82991389	protein_coding	Slfn4	intron	ENSMUSG00000000204	NonProperStrand	1	1	-inf
chr17	39847324	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	93388503	93388573	Simple_repeat	(TC)n	Simple_repeat	chrX(TC)n93388440	NonProperStrand	1	1	-inf
chrX	106064289	106064349	lincRNA	2810403D21Rik	intron	ENSMUSG00000086629	ProperStrand	17	chr9	123461882	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr7	34202197	34202358	LTR	MMETn-int	ERVK	chr7MMETn-int34202121	ProperStrand	20	chr7	34202377	34202659	LTR	RLTR9E	ERVK	chr7RLTR9E34202391	ProperStrand	22	8	-inf
chr11	115161647	115161666	SINE	B2_Mm2	B2	chr11B2_Mm2115161543	NonProperStrand	1	chr9	65808054	65808144	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	NonProperStrand	105	1	-inf
chr1	156438551	156438653	protein_coding	Cacna1e	intron	ENSMUSG00000004110	ProperStrand	66	chr17	37003386	37003438	protein_coding	Trim15	intron	ENSMUSG00000050747	NonProperStrand	45	1	-12.4111
chr13	112578190	112578255	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr19	47207548	47207603	protein_coding	Calhm2	exon	ENSMUSG00000033033	NonProperStrand	14	1	-7.0807
chr13	62453090	62453130	Satellite	MMSAT4	Satellite	chr13MMSAT462452654	NonProperStrand	1	chr7	133078141	133078171	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr18	44307502	44307592	LINE	L1M5	L1	chr18L1M544307367	ProperStrand	1	chr18	44307675	44307775	LINE	L1_Mus2	L1	chr18L1_Mus244307686	ProperStrand	1	1	-inf
chr13	23481344	23481444	LTR	MLT1E2	MaLR	chr13MLT1E223481309	ProperStrand	1	chr13	23481612	23481702	LTR	ORR1D2	MaLR	chr13ORR1D223481618	NonProperStrand	1	1	-inf
chr12	70647509	70647609	LTR	MLT1B	MaLR	chr12MLT1B70647374	ProperStrand	1	chr12	70647699	70647789	SINE	B1_Mur4	Alu	chr12B1_Mur470647722	ProperStrand	1	1	-inf
chr15	102391316	102391396	protein_coding	Atf7	intron	ENSMUSG00000052414	NonProperStrand	47	chr12	109681520	109681590	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-8.2809
chr17	63136626	63136685	protein_coding	Efna5	intron	ENSMUSG00000048915	ProperStrand	104	chr5	135008019	135008099	protein_coding	Clip2	intron	ENSMUSG00000063146	ProperStrand	3	1	-17.3232
chr13	100488491	100488527	LINE	L1M4b	L1	chr13L1M4b100488320	ProperStrand	1	chr13	100487620	100487666	LTR	ORR1D2	MaLR	chr13ORR1D2100487571	ProperStrand	1	1	-inf
chr15	25363653	25363744	LTR	MTB_Mm	MaLR	chr15MTB_Mm25363495	NonProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr19	5802275	5802360	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	115693353	115693386	protein_coding	Llgl2	utr5	ENSMUSG00000020782	NonProperStrand	30	1	-5.7886
chr8	91592458	91592558	LTR	RLTR42-int	ERVK	chr8RLTR42-int91592427	ProperStrand	6	chr8	91592348	91592438	SINE	B1_Mus2	Alu	chr8B1_Mus291592281	NonProperStrand	2	2	-inf
chr12	102601530	102601598	LINE	L1VL4	L1	chr12L1VL4102601072	ProperStrand	6	chr6	118419146	118419204	protein_coding	Zfp9	intron	ENSMUSG00000072623	ProperStrand	10	1	-21.3688
chr1	161241584	161241666	protein_coding	Rfwd2	intron	ENSMUSG00000040782	NonProperStrand	36	chr9	62342853	62342919	protein_coding	Coro2b	intron	ENSMUSG00000041729	NonProperStrand	105	1	-11.9297
chr13	23757020	23757068	LINE	Lx2	L1	chr13Lx223755611	ProperStrand	2	chr5	146261154	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-12.4657
chr17	39845197	39845243	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	81344735	81344829	LTR	MT2A	ERVL	chr7MT2A81344415	NonProperStrand	8	1	-6.0772
chr11	104670158	104670176	LINE	L1Md_F3	L1	chr11L1Md_F3104669384	ProperStrand	1	chr17	39847036	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	35	1	-inf
chr13	9834307	9834373	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr14	7930800	7930879	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-6.6627
chr4	154153069	154153169	SINE	B3A	B2	chr4B3A154153043	ProperStrand	3	chr11	86965807	86965897	protein_coding	Trim37	intron	ENSMUSG00000018548	NonProperStrand	72	3	-inf
chr17	39846718	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	20607490	20607538	protein_coding	Col5a3	intron	ENSMUSG00000004098	ProperStrand	5	1	-3.1907
chr11	109011655	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	77496180	77496263	SINE	B2_Mm2	B2	chr11B2_Mm277496166	NonProperStrand	1	1	-inf
chr13	62693890	62693998	LINE	Lx3_Mus	L1	chr13Lx3_Mus62693880	NonProperStrand	1	chr14	101020196	101020212	Low_complexity	CT-rich	Low_complexity	chr14CT-rich101020041	ProperStrand	1	1	-inf
chr14	20694401	20694472	protein_coding	Gng2	utr3	ENSMUSG00000043004	NonProperStrand	52	chr12	17736735	17736791	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-8.8848
chr5	110202702	110202806	LINE	L1_Mm	L1	chr5L1_Mm110202469	ProperStrand	2	chr5	110204789	110204826	LTR	RLTR46	ERVK	chr5RLTR46110204621	ProperStrand	1	1	-inf
chr18	21023876	21023945	protein_coding	Trappc8	intron	ENSMUSG00000033382	NonProperStrand	16	chr13	44869625	44869684	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-7.1067
chr1	45416646	45416736	LINE	Lx	L1	chr1Lx45416440	NonProperStrand	1	chr1	45416986	45417086	LINE	Lx	L1	chr1Lx45416908	NonProperStrand	1	1	-inf
chr1	132653048	132653071	LINE	L1Md_F2	L1	chr1L1Md_F2132650833	NonProperStrand	1	chr1	132655239	132655276	LINE	L1Md_F2	L1	chr1L1Md_F2132654438	NonProperStrand	1	1	-inf
chr2	119120965	119121065	protein_coding-noncoding	Vps18	utr5	ENSMUSG00000034216	ProperStrand	1	chr2	119118535	119118625	protein_coding	Vps18	intron	ENSMUSG00000034216	ProperStrand	12	1	-inf
chr15	76904647	76904939	LTR	RLTR12B	ERVK	chr15RLTR12B76904629	ProperStrand	27	chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	4	-3.3569
chr16	18339385	18339474	protein_coding	D16H22S680E	intron	ENSMUSG00000013539	ProperStrand	15	chr16	17091184	17091235	protein_coding	Ppil2	intron	ENSMUSG00000022771	ProperStrand	23	1	-16.7832
chr1	89510326	89510416	DNA	URR1A	MER1_type	chr1URR1A89510163	ProperStrand	4	chr1	89510445	89510545	LTR	MLT2D	ERVL	chr1MLT2D89510434	NonProperStrand	4	4	-inf
chr17	39848176	39848253	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	101386360	101386377	protein_coding	4732456N10Rik	intron	ENSMUSG00000048699	ProperStrand	1	1	-inf
chr17	39846816	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	107039847	107039935	protein_coding-noncoding	Nol11	utr3	ENSMUSG00000018433	ProperStrand	1	1	-inf
chr7	139430100	139430190	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	chr7	139429832	139429932	protein_coding	Chst15	utr3	ENSMUSG00000030930	ProperStrand	1	1	-inf
chr15	45812474	45812564	LINE	Lx6	L1	chr15Lx645812265	ProperStrand	1	chr15	45166064	45166164	LINE	Lx9	L1	chr15Lx945166009	ProperStrand	1	1	-inf
chrX	102187357	102187402	SINE	PB1D10	Alu	chrXPB1D10102187362	NonProperStrand	5	chr9	123461953	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr2	156627431	156627479	LTR	MYSERV-int	ERVK	chr2MYSERV-int156627324	ProperStrand	1	chr2	156634316	156634375	SINE	PB1D9	Alu	chr2PB1D9156634279	ProperStrand	1	1	-inf
chr17	39847943	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	137116105	137116217	lincRNA	Gm14055	intron	ENSMUSG00000085504	NonProperStrand	2	1	-5.4040
chr4	148805605	148805705	LTR	ORR1A2-int	MaLR	chr4ORR1A2-int148805615	NonProperStrand	1	chr4	148805493	148805584	LTR	ORR1A2	MaLR	chr4ORR1A2148805430	ProperStrand	1	1	-inf
chr8	116982308	116982387	protein_coding	Wwox	intron	ENSMUSG00000004637	NonProperStrand	44	chr17	25261934	25261959	protein_coding	Ptx4	exon	ENSMUSG00000044172	NonProperStrand	27	1	-14.2635
chr10	61697682	61697782	LTR	MTD	MaLR	chr10MTD61697688	NonProperStrand	5	chr10	61697593	61697683	LTR	ORR1C1	MaLR	chr10ORR1C161697431	NonProperStrand	3	3	-inf
chr12	111059444	111059502	LTR	IAPEz-int	ERVK	chr12IAPEz-int111059195	NonProperStrand	1	chr17	70883694	70883734	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	1	-inf
chr2	9859623	9859643	protein_coding	Taf3	intron	ENSMUSG00000025782	ProperStrand	59	chr3	22099649	22099742	protein_coding	Tbl1xr1	intron	ENSMUSG00000027630	ProperStrand	100	1	-11.0298
chr12	86445243	86445299	protein_coding	Prox2	intron	ENSMUSG00000042320	ProperStrand	63	chr3	88712094	88712167	protein_coding	Gon4l	exon	ENSMUSG00000054199	ProperStrand	66	1	-11.7324
chr9	44640233	44640322	protein_coding	Mll1	intron	ENSMUSG00000002028	NonProperStrand	44	chr9	102238794	102238814	protein_coding	Ephb1	intron	ENSMUSG00000032537	ProperStrand	10	1	-16.3252
chr16	87483980	87484026	protein_coding	Cct8	utr3	ENSMUSG00000025613	ProperStrand	46	chr3	8967332	8967382	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	1	-9.4853
chr3	90475843	90475898	LINE	Lx9	L1	chr3Lx990474879	ProperStrand	8	chr17	39847366	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-4.3369
chr17	39847444	39847642	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	102658768	102658785	protein_coding	Cd44	intron	ENSMUSG00000005087	NonProperStrand	5	2	-5.9065
chr2	153517423	153517513	LTR	MTA_Mm-int	MaLR	chr2MTA_Mm-int153517413	NonProperStrand	2	chr2	153517322	153517422	LTR	MTA_Mm	MaLR	chr2MTA_Mm153517020	NonProperStrand	1	1	-inf
chr17	39847658	39847740	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	52337006	52337078	LTR	RMER6-int	ERVK	chr8RMER6-int52336818	ProperStrand	4	1	-3.7035
chr17	39845440	39845546	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr1	178331124	178331154	LTR	MER21B	ERV1	chr1MER21B178330411	NonProperStrand	14	1	-4.9353
chr19	54258640	54258676	LTR	MTE2a	MaLR	chr19MTE2a54258401	ProperStrand	1	chr9	59679179	59679205	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr1	180733251	180734378	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	173	chr5	121732772	121732853	protein_coding	Gm15800	intron	ENSMUSG00000042744	ProperStrand	172	1	-7.7934
chr15	80082858	80082920	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr1	89535144	89535241	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-4.1981
chr8	67899569	67899659	SINE	B1_Mus1	Alu	chr8B1_Mus167899573	NonProperStrand	2	chr8	67899865	67899965	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n67899847	ProperStrand	2	2	-inf
chr5	146261132	146261182	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	32257679	32257765	lincRNA	Gm17276	intron	ENSMUSG00000090984	NonProperStrand	12	1	-8.2893
chr17	39847187	39847218	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	46195563	46195584	protein_coding	Itk	intron	ENSMUSG00000020395	ProperStrand	5	1	-4.3348
chr7	93829887	93829987	LINE	L1VL2	L1	chr7L1VL293828306	ProperStrand	1	chr7	93830008	93830098	LTR	MT-int	MaLR	chr7MT-int93830026	NonProperStrand	1	1	-inf
chr5	121445376	121445452	protein_coding	Rph3a	intron	ENSMUSG00000029608	ProperStrand	32	chr2	10004651	10004737	protein_coding	Kin	intron	ENSMUSG00000037262	NonProperStrand	20	1	-15.5268
chr17	39846846	39846925	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	19701455	19701524	protein_coding	Epdr1	intron	ENSMUSG00000002808	NonProperStrand	5	1	-3.1907
chr11	78533917	78534017	LTR	RLTR19B	ERVK	chr11RLTR19B78533752	ProperStrand	1	chr11	78533597	78533687	SINE	B1_Mus2	Alu	chr11B1_Mus278533605	ProperStrand	1	1	-inf
chr5	104439292	104439381	protein_coding	Hsd17b11	intron	ENSMUSG00000029311	NonProperStrand	34	chr1	131573834	131573870	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-10.1100
chr2	155421673	155421715	SINE	ID_B1	B4	chr2ID_B1155421560	NonProperStrand	2	chr11	33368773	33368891	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	2	-inf
chr14	66973481	66973570	protein_coding-noncoding	Stmn4	utr5	ENSMUSG00000022044	NonProperStrand	5	chr14	66973356	66973456	protein_coding	Stmn4	intron	ENSMUSG00000022044	NonProperStrand	23	5	-inf
chr16	91655251	91655341	protein_coding	Son	exon	ENSMUSG00000022961	ProperStrand	70	chr15	7984484	7984584	protein_coding	Wdr70	intron	ENSMUSG00000039828	ProperStrand	93	1	-10.8315
chr4	43263560	43263600	protein_coding	Unc13b	intron	ENSMUSG00000028456	ProperStrand	85	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.2896
chr18	78759949	78760049	LTR	ORR1C2	MaLR	chr18ORR1C278759803	ProperStrand	1	chr18	78760204	78760294	Simple_repeat	(TCTA)n	Simple_repeat	chr18(TCTA)n78760180	NonProperStrand	1	1	-inf
chr15	103410287	103410409	LTR	MT2B	ERVL	chr15MT2B103410148	NonProperStrand	1	chr17	39843547	39843563	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr16	33961972	33962028	protein_coding	Umps	exon	ENSMUSG00000022814	ProperStrand	19	chr13	44869602	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.7578
chr1	127250945	127251034	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n127250882	ProperStrand	1	chr2	5379307	5379364	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr12	113079198	113079304	protein_coding	Ppp1r13b	exon	ENSMUSG00000021285	NonProperStrand	48	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.0143
chr17	39847602	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	31462337	31462381	SINE	PB1D10	Alu	chr14PB1D1031462317	ProperStrand	1	1	-inf
chr11	12342753	12342892	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-4.9290
chr5	146260994	146261022	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr15	94200577	94200596	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	2	-9.3377
chr1	181112315	181114095	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	chr7	3297750	3297807	protein_coding	Myadm	utr3	ENSMUSG00000068566	ProperStrand	30	1	-11.4421
chr7	3216508	3216581	LINE	Lx4A	L1	chr7Lx4A3216441	NonProperStrand	1	chr17	39846351	39846434	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	105798675	105798710	DNA	Tigger7	MER2_type	chr12Tigger7105798556	ProperStrand	1	chr12	109634284	109634366	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-inf
chr6	39689758	39689828	LTR	RLTR45	ERVK	chr6RLTR4539689470	ProperStrand	3	chr6	39720771	39720831	LTR	RMER17C	ERVK	chr6RMER17C39720661	ProperStrand	1	1	-inf
chr19	5800635	5800750	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr4	125217484	125217503	protein_coding	Grik3	intron	ENSMUSG00000001985	NonProperStrand	8	1	-8.4920
chr11	69667044	69667337	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr13	44869573	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-3.3420
chr8	124532465	124533225	protein_coding	Banp	intron	ENSMUSG00000025316	ProperStrand	14	chr18	89010944	89013015	protein_coding	Socs6	intron	ENSMUSG00000056153	NonProperStrand	12	1	-18.1131
chr14	50916392	50916643	LINE	Lx9	L1	chr14Lx950916163	NonProperStrand	1	chr4	147239350	147239415	protein_coding-noncoding	Miip	utr3	ENSMUSG00000029022	NonProperStrand	1	1	-inf
chr16	33961463	33961567	protein_coding	Umps	intron	ENSMUSG00000022814	ProperStrand	19	chr2	140004495	140004552	protein_coding	2310003L22Rik	intron	ENSMUSG00000027384	NonProperStrand	20	1	-16.5940
chr17	39846750	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	70776920	70777039	LTR	ORR1D2	MaLR	chr8ORR1D270776879	NonProperStrand	4	1	-3.6552
chr10	117059995	117060095	LTR	RLTR13C2	ERVK	chr10RLTR13C2117059412	ProperStrand	10	chr10	117060196	117060286	SINE	B3A	B2	chr10B3A117060216	ProperStrand	4	4	-inf
chr8	86730833	86730933	SINE	B1_Mur1	Alu	chr8B1_Mur186730807	ProperStrand	1	chr8	86730991	86731081	SINE	B3	B2	chr8B386730979	ProperStrand	1	1	-inf
chr17	39847552	39847579	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	25248952	25249204	SINE	B3	B2	chr2B325248967	NonProperStrand	1	1	-inf
chr10	18062724	18062773	SINE	B1_Mus1	Alu	chr10B1_Mus118062733	NonProperStrand	2	chr18	7871597	7871657	protein_coding	Wac	utr5	ENSMUSG00000024283	ProperStrand	36	1	-20.7183
chr12	113025750	113025850	protein_coding-noncoding	Klc1	utr5	ENSMUSG00000021288	ProperStrand	4	chr12	113025665	113025755	protein_coding	Klc1	intron	ENSMUSG00000021288	ProperStrand	57	4	-inf
chr17	39847257	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	39592624	39596462	protein_coding-noncoding	Braf	utr3	ENSMUSG00000002413	NonProperStrand	5	1	-4.3348
chr7	132860609	132860710	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	ProperStrand	47	chr2	20103305	20103321	protein_coding	Etl4	intron	ENSMUSG00000036617	NonProperStrand	26	1	-14.2097
chr1	167017298	167017385	LINE	Lx7	L1	chr1Lx7167017264	ProperStrand	1	chr13	54606689	54606728	protein_coding	4732471D19Rik	intron	ENSMUSG00000043183	NonProperStrand	10	1	-inf
chr17	48417603	48417671	LTR	RLTR10A	ERVK	chr17RLTR10A48417388	NonProperStrand	1	chr17	48417930	48417995	LTR	RMER6A	ERVK	chr17RMER6A48417792	NonProperStrand	1	1	-inf
chr11	83224610	83225551	protein_coding	Rasl10b	intron	ENSMUSG00000020684	ProperStrand	1	chr11	83238972	83239063	protein_coding	Gas2l2	intron	ENSMUSG00000020686	NonProperStrand	1	1	-inf
chr6	28406160	28406250	LINE	L1MC3	L1	chr6L1MC328406140	ProperStrand	1	chr6	28405904	28406004	SINE	B4A	B4	chr6B4A28405903	ProperStrand	1	1	-inf
chr17	39847823	39847906	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	34384594	34436471	protein_coding	Poln	intron	ENSMUSG00000045102	ProperStrand	6	2	-5.2646
chr17	39843346	39843436	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr3	132984185	132984285	protein_coding	Ppa2	intron	ENSMUSG00000028013	NonProperStrand	29	1	-3.8847
chr17	48150888	48150988	DNA	MamRep38	hAT	chr17MamRep3848150896	ProperStrand	1	chr17	48150681	48150771	SINE	MIRc	MIR	chr17MIRc48150680	NonProperStrand	1	1	-inf
chr2	154565767	154565817	LTR	RMER17B	ERVK	chr2RMER17B154565313	NonProperStrand	7	chr2	156693555	156693615	protein_coding	1110008F13Rik	intron	ENSMUSG00000027637	ProperStrand	4	1	-inf
chr17	39847443	39847548	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	174175816	174175833	protein_coding	Atp1a4	intron	ENSMUSG00000007107	ProperStrand	2	1	-5.4040
chr1	3177392	3177492	LINE	L1VL4	L1	chr1L1VL43177336	NonProperStrand	1	chr1	3177026	3177116	LINE	Lx2	L1	chr1Lx23176197	NonProperStrand	1	1	-inf
chr5	146261022	146261048	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	133705561	133705577	protein_coding	Gm17345	intron	ENSMUSG00000090954	ProperStrand	1	1	-inf
chr17	39847804	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	102184994	102185032	Simple_repeat	(TG)n	Simple_repeat	chrX(TG)n102184975	NonProperStrand	2	1	-5.4040
chr9	123462103	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	138305231	138308283	protein_coding	Pla2g2f	exon	ENSMUSG00000028749	NonProperStrand	14	1	-3.7266
chr6	56556653	56556743	LINE	L1Md_F3	L1	chr6L1Md_F356556489	ProperStrand	1	chr6	56556996	56557096	LTR	RMER5	ERV1	chr6RMER556556764	ProperStrand	1	1	-inf
chr11	21313416	21313488	LTR	MTE-int	MaLR	chr11MTE-int21312858	NonProperStrand	1	chr1	171340949	171341032	SINE	B4A	B4	chr1B4A171340948	NonProperStrand	6	1	-inf
chr14	78607098	78607154	LTR	ORR1E	MaLR	chr14ORR1E78607020	NonProperStrand	1	chr6	35120352	35120418	LTR	MT2A	ERVL	chr6MT2A35120280	NonProperStrand	1	1	-inf
chr17	39848098	39848165	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	33360552	33362748	protein_coding	Ywhah	utr3	ENSMUSG00000018965	ProperStrand	19	1	-3.4660
chr11	68227714	68227804	LTR	MTEa	MaLR	chr11MTEa68227637	ProperStrand	1	chr11	68207527	68207627	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	1	-inf
chr18	31602792	31605803	protein_coding	Syt4	intron	ENSMUSG00000024261	ProperStrand	1	chr1	181106579	181106647	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-inf
chr17	39846462	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	19558205	19558284	Satellite	ZP3AR	Satellite	chr7ZP3AR19558228	NonProperStrand	1	1	-inf
chr2	135789808	135789849	protein_coding	Plcb4	intron	ENSMUSG00000039943	ProperStrand	126	chr13	97190572	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.7121
chr14	67835213	67835248	SINE	ID4	ID	chr14ID467835178	ProperStrand	1	chr17	35834982	35835074	protein_coding	Ddr1	intron	ENSMUSG00000003534	ProperStrand	232	1	-inf
chr13	6581265	6581286	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr8	87885522	87885618	protein_coding	Mylk3	intron	ENSMUSG00000031698	ProperStrand	57	1	-8.0521
chr17	39843817	39843884	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	161037372	161037435	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	8	1	-6.9216
chr18	24729153	24729243	LINE	L1Md_T	L1	chr18L1Md_T24728391	NonProperStrand	1	chr12	87195431	87195531	protein_coding	Ttll5	intron	ENSMUSG00000012609	ProperStrand	42	1	-inf
chr17	39847478	39847532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	56878379	56878467	LTR	ORR1D1	MaLR	chr6ORR1D156878088	ProperStrand	3	1	-4.3512
chr4	128961319	128961473	SINE	B1_Mm	Alu	chr4B1_Mm128961338	NonProperStrand	14	chr4	128961473	128961583	Simple_repeat	(CAAA)n	Simple_repeat	chr4(CAAA)n128961496	NonProperStrand	13	13	-inf
chr7	47188603	47188644	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr17	8288934	8289013	protein_coding	Gm1604A	intron	ENSMUSG00000052126	NonProperStrand	15	1	-14.4213
chr7	126502999	126503089	LTR	MLT1A1	MaLR	chr7MLT1A1126502984	NonProperStrand	2	chr7	126502838	126502938	SINE	B4A	B4	chr7B4A126502696	NonProperStrand	4	2	-inf
chr17	39847206	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	10209866	10209899	SINE	PB1D10	Alu	chr19PB1D1010209834	NonProperStrand	1	1	-inf
chr13	24730641	24730691	protein_coding	Fam65b	utr5	ENSMUSG00000036006	NonProperStrand	42	chr13	97190554	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8202
chr8	119912639	119912658	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	NonProperStrand	22	chr17	81838521	81838571	protein_coding	Slc8a1	intron	ENSMUSG00000054640	ProperStrand	8	1	-18.3441
chr17	39847384	39847420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	142498542	142498648	LTR	MTEa-int	MaLR	chr6MTEa-int142498286	ProperStrand	3	1	-4.3512
chr4	43492783	43492852	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr1	52212983	52213067	protein_coding	Stat1	intron	ENSMUSG00000026104	NonProperStrand	47	1	-7.5800
chr7	12930819	12930841	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.4075
chr11	25716051	25716162	protein_coding	5730522E02Rik	intron	ENSMUSG00000032985	ProperStrand	42	chr13	97190561	97190605	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.8202
chr2	93303221	93303311	lincRNA	Gm10804	intron	ENSMUSG00000075025	NonProperStrand	3	chr2	93303119	93303219	protein_coding	Cd82	utr5	ENSMUSG00000027215	ProperStrand	5	3	-inf
chr4	126317362	126317768	LINE	L2b	L2	chr4L2b126317656	ProperStrand	2	chr4	126316845	126317382	SINE	B2_Mm2	B2	chr4B2_Mm2126317234	ProperStrand	1	1	-inf
chr4	123399495	123401468	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int123400876	NonProperStrand	1	chr4	123399361	123399461	LTR	RMER19B	ERVK	chr4RMER19B123398934	ProperStrand	1	1	-inf
chr1	23862437	23862537	protein_coding	Smap1	intron	ENSMUSG00000026155	ProperStrand	16	chr12	67661127	67661217	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-14.2636
chr1	122357187	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr6	72724789	72724896	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	1	-5.8620
chr4	130707301	130707357	SINE	MIR	MIR	chr4MIR130707278	NonProperStrand	1	chr19	47068182	47068242	protein_coding	Nt5c2	intron	ENSMUSG00000025041	NonProperStrand	13	1	-inf
chr11	107429951	107430004	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	200	chr19	5490521	5490561	protein_coding	Cfl1	utr5	ENSMUSG00000056201	ProperStrand	65	1	-9.4476
chr10	59367528	59367627	SINE	B1_Mur4	Alu	chr10B1_Mur459367536	ProperStrand	1	chr17	25783814	25783830	protein_coding-noncoding	Lmf1	utr5	ENSMUSG00000002279	ProperStrand	3	1	-inf
chr6	116128679	116128794	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	chr4	34808986	34809016	protein_coding	Zfp292	intron	ENSMUSG00000039967	ProperStrand	60	1	-12.0569
chr9	7970512	7970580	protein_coding	Yap1	intron	ENSMUSG00000053110	ProperStrand	74	chr18	45570538	45570615	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	1	-12.5230
chr15	81639803	81639871	protein_coding	Tef	intron	ENSMUSG00000022389	ProperStrand	15	chr2	156460246	156460308	protein_coding	Dlgap4	intron	ENSMUSG00000061689	ProperStrand	127	1	-13.3401
chr2	32777579	32777664	protein_coding	Fam129b	exon	ENSMUSG00000026796	ProperStrand	30	chr2	34186040	34186071	protein_coding	Pbx3	intron	ENSMUSG00000038718	ProperStrand	18	1	-15.8826
chr8	54525050	54526460	LTR	RMER20B	ERVK	chr8RMER20B54526367	ProperStrand	1	chr18	53717184	53717265	protein_coding	Prdm6	intron	ENSMUSG00000069378	NonProperStrand	20	1	-inf
chr6	3200928	3201640	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	13	-5.9189
chr17	39848572	39848595	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	120562410	120562488	SINE	B4A	B4	chr8B4A120562351	NonProperStrand	1	1	-inf
chr1	143376518	143376618	LINE	L1_Mus2	L1	chr1L1_Mus2143376125	ProperStrand	1	chr1	143376740	143376830	LINE	L1_Mus2	L1	chr1L1_Mus2143376637	NonProperStrand	1	1	-inf
chr17	39847804	39847840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	96724263	96724320	protein_coding	Gja8	utr5	ENSMUSG00000049908	ProperStrand	4	1	-3.7035
chr16	23108953	23109026	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr18	74778393	74778447	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	68	1	-9.6583
chr10	122565796	122565896	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	chr1	157261592	157261682	protein_coding	Xpr1	intron	ENSMUSG00000026469	ProperStrand	32	1	-14.3847
chr5	115936213	115936313	SINE	B4A	B4	chr5B4A115936068	NonProperStrand	1	chr5	115936516	115936606	SINE	ID_B1	B4	chr5ID_B1115936517	ProperStrand	1	1	-inf
chr3	3036848	3036867	LINE	L1VL4	L1	chr3L1VL43033630	NonProperStrand	2	chr17	39847444	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	4082707	4082797	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr9	3807694	3807794	protein_coding	Gucy1a2	intron	ENSMUSG00000041624	ProperStrand	26	1	-12.5529
chr17	39847102	39847212	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	88149415	88149437	protein_coding	Smg5	intron	ENSMUSG00000001415	NonProperStrand	2	1	-6.5615
chr16	23108042	23113858	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	123	chr9	123461882	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	5	-3.8508
chr13	111421660	111421692	LINE	L1Md_F2	L1	chr13L1Md_F2111421141	ProperStrand	1	chr15	97982028	97982050	protein_coding	Asb8	intron	ENSMUSG00000048175	ProperStrand	1	1	-inf
chr9	123461993	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	65000849	65000870	protein_coding	Smarcad1	intron	ENSMUSG00000029920	NonProperStrand	17	1	-3.3592
chr17	26235125	26235215	SINE	B4A	B4	chr17B4A26235085	ProperStrand	1	chr17	26234983	26235083	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n26234935	NonProperStrand	1	1	-inf
chr4	40985732	40985822	protein_coding	Aqp7	intron	ENSMUSG00000028427	NonProperStrand	39	chr2	121936060	121936160	protein_coding	Spg11	intron	ENSMUSG00000033396	ProperStrand	10	1	-16.5692
chr15	53239358	53239387	LINE	L1VL2	L1	chr15L1VL253239152	ProperStrand	2	chr15	53240641	53240740	LTR	ORR1D1	MaLR	chr15ORR1D153240349	NonProperStrand	2	1	-19.8939
chr10	11281346	11281367	LINE	L1MA7	L1	chr10L1MA711281320	ProperStrand	1	chr17	39846461	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	21137777	21137801	LINE	L1VL4	L1	chr6L1VL421137369	NonProperStrand	1	chr4	128618144	128618161	protein_coding	Adc	intron	ENSMUSG00000028789	ProperStrand	2	1	-inf
chr10	127468615	127468638	LTR	MT2B	ERVL	chr10MT2B127468597	ProperStrand	1	chr10	127465690	127465723	protein_coding	Prim1	intron	ENSMUSG00000025395	ProperStrand	11	1	-inf
chr16	10140111	10140201	LTR	MTB_Mm-int	MaLR	chr16MTB_Mm-int10139982	ProperStrand	1	chr16	10140292	10140392	SINE	B3A	B2	chr16B3A10140302	NonProperStrand	1	1	-inf
chr4	43751870	43756125	LTR	MLT1D	MaLR	chr4MLT1D43751743	ProperStrand	3	chr13	8767067	8767158	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	1	-19.2641
chr10	111488640	111488677	Simple_repeat	(TTCTC)n	Simple_repeat	chr10(TTCTC)n111488619	ProperStrand	1	chr2	5379241	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr6	83862123	83862223	LTR	MYSERV-int	ERVK	chr6MYSERV-int83861923	ProperStrand	1	chr6	83862292	83862382	LTR	RMER4A	ERVK	chr6RMER4A83862241	ProperStrand	1	1	-inf
chr5	148315309	148315325	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	chr12	21395030	21396399	protein_coding	Ywhaq	utr3	ENSMUSG00000076432	ProperStrand	53	1	-11.7190
chr11	55482757	55482806	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr8	70543483	70543522	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	3	-21.9379
chr8	91666402	91666464	LINE	L2a	L2	chr8L2a91666309	ProperStrand	1	chr17	39847119	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr18	4942476	4942497	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	261	chr14	27431102	27431192	protein_coding	Fam116a	intron	ENSMUSG00000040818	ProperStrand	34	1	-10.2217
chr2	69834376	69834414	protein_coding	Ubr3	intron	ENSMUSG00000044308	NonProperStrand	8	chr12	110829292	110829341	protein_coding	Rtl1	exon	ENSMUSG00000085925	ProperStrand	3	1	-inf
chr3	104882646	104882666	LTR	MTA_Mm	MaLR	chr3MTA_Mm104882557	NonProperStrand	4	chr12	78350926	78350998	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-11.5356
chr3	75621450	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr13	23420630	23420660	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	1	-14.9385
chr8	120421195	120421212	Simple_repeat	(TATG)n	Simple_repeat	chr8(TATG)n120421146	NonProperStrand	3	chr9	40803994	40804068	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-13.7959
chr18	44390384	44390426	LINE	L1Md_T	L1	chr18L1Md_T44388071	ProperStrand	7	chr6	65818651	65818758	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-13.9850
chr8	19014079	19014169	LINE	L1Md_F2	L1	chr8L1Md_F219009463	NonProperStrand	2	chr8	19294089	19294189	protein_coding	Defb3	intron	ENSMUSG00000039775	ProperStrand	1	1	-inf
chr4	32107213	32107313	protein_coding	Map3k7	utr3	ENSMUSG00000028284	NonProperStrand	1	chr4	32443813	32443903	protein_coding	Bach2	intron	ENSMUSG00000040270	NonProperStrand	12	1	-inf
chr6	3201521	3201556	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr16	20550641	20550686	protein_coding	Abcf3	exon	ENSMUSG00000003234	ProperStrand	6	1	-7.4430
chr14	45380605	45380652	LTR	IAPEY3-int	ERVK	chr14IAPEY3-int45379901	NonProperStrand	9	chr13	44869611	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.2984
chr13	97190553	97190617	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr1	133600004	133600058	protein_coding	5430435G22Rik	intron	ENSMUSG00000052688	NonProperStrand	19	1	-7.4076
chr17	21578378	21578399	LINE	Lx9	L1	chr17Lx921578220	NonProperStrand	1	chr17	39848021	39848068	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	138168169	138168419	SINE	B1_Mus2	Alu	chr5B1_Mus2138168328	ProperStrand	6	chr5	138168058	138168158	SINE	B4	B4	chr5B4138168081	ProperStrand	1	1	-inf
chr11	19929316	19929546	Other	RMER1C	Other	chr11RMER1C19929340	ProperStrand	5	chr11	19929214	19929357	SINE	B3	B2	chr11B319929166	ProperStrand	3	3	-inf
chr15	48689431	48689531	LTR	MTC-int	MaLR	chr15MTC-int48688423	ProperStrand	1	chr7	124537673	124537763	protein_coding	Xylt1	intron	ENSMUSG00000030657	ProperStrand	7	1	-inf
chr17	39846763	39846853	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	90771957	90772057	LTR	RLTR6-int	ERV1	chr2RLTR6-int90771590	ProperStrand	2	1	-5.3533
chr9	17987803	17987836	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr13	112578182	112578267	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-3.3903
chr17	55652127	55652151	protein_coding	St6gal2	utr3	ENSMUSG00000024172	ProperStrand	7	chr9	123462138	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr9	123462061	123462151	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr11	117660339	117660439	protein_coding	6030468B19Rik	intron	ENSMUSG00000025573	ProperStrand	17	1	-3.3592
chr8	41336817	41336909	LINE	L1Md_T	L1	chr8L1Md_T41331144	NonProperStrand	4	chr12	98491496	98491514	LTR	MLT2B2	ERVL	chr12MLT2B298491195	NonProperStrand	1	1	-inf
chr7	125487433	125487515	LINE	L1M4c	L1	chr7L1M4c125487316	NonProperStrand	1	chr1	118459135	118459191	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	NonProperStrand	63	1	-inf
chr16	57352016	57352054	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr18	23191617	23191633	protein_coding	Nol4	intron	ENSMUSG00000041923	NonProperStrand	11	1	-11.9764
chr3	113708700	113708800	LINE	L1Md_F	L1	chr3L1Md_F113707308	NonProperStrand	1	chr3	113708862	113708952	LINE	L1Md_F	L1	chr3L1Md_F113708808	NonProperStrand	1	1	-inf
chr9	58968701	58968772	LINE	L1Md_T	L1	chr9L1Md_T58966964	ProperStrand	4	chr17	39847192	39847238	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.8204
chr13	42196066	42196156	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	54	chr14	117976919	117977019	protein_coding	Gpc6	intron	ENSMUSG00000058571	ProperStrand	66	3	-19.3743
chr12	106040232	106040314	protein_coding	Clmn	intron	ENSMUSG00000021097	NonProperStrand	79	chr2	5379293	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0260
chr12	110550152	110550264	LTR	ORR1E-int	MaLR	chr12ORR1E-int110550169	ProperStrand	4	chr17	39846733	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr17	39845973	39846070	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	94362455	94362473	protein_coding	Snx27	intron	ENSMUSG00000028136	NonProperStrand	5	1	-6.7797
chr17	39846461	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	88169466	88169576	protein_coding-noncoding	Paqr6	utr5	ENSMUSG00000041423	ProperStrand	4	1	-3.6552
chr12	83637906	83637996	LINE	L1M2	L1	chr12L1M283637797	ProperStrand	1	chr12	83638021	83638121	LINE	L1M2	L1	chr12L1M283638016	NonProperStrand	1	1	-inf
chr17	39846462	39846534	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	17956900	17956934	lincRNA	Gm10827	exon	ENSMUSG00000075308	ProperStrand	1	1	-inf
chr12	85331297	85331398	protein_coding	Acot2	intron	ENSMUSG00000021226	NonProperStrand	3	chr15	98658421	98662857	protein_coding	Mll2	utr3	ENSMUSG00000048154	ProperStrand	2	1	-20.2824
chr7	75769665	75769707	DNA	MER99	hAT?	chr7MER9975769347	NonProperStrand	2	chr7	75770016	75770120	LINE	L1Md_F2	L1	chr7L1Md_F275769915	NonProperStrand	42	1	-21.2163
chr18	52479717	52479810	LTR	RMER15	ERVL	chr18RMER1552479713	ProperStrand	1	chr8	70570121	70570180	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	1	-inf
chr11	107220927	107221004	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	chr2	158359788	158359833	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-7.2865
chr2	93821636	93821667	protein_coding	Alkbh3	intron	ENSMUSG00000040174	ProperStrand	9	chr6	93823474	93823597	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-10.1445
chr5	120078804	120078893	antisense	Gm2301	.	ENSMUSG00000087516	ProperStrand	1	chr5	118291349	118291449	protein_coding	Nos1	intron	ENSMUSG00000029361	ProperStrand	30	1	-inf
chr8	80822009	80822114	protein_coding	Ttc29	intron	ENSMUSG00000037101	NonProperStrand	643	chr11	68363480	68363520	protein_coding	Pik3r6	intron	ENSMUSG00000046207	NonProperStrand	155	1	-5.4171
chr5	84248986	84249007	LINE	Lx2	L1	chr5Lx284247974	NonProperStrand	1	chr5	33527195	33527303	LTR	RLTR10	ERVK	chr5RLTR1033527106	NonProperStrand	14	1	-inf
chr14	69705183	69705201	LINE	Lx8	L1	chr14Lx869704934	NonProperStrand	2	chr5	89360838	89360927	protein_coding	Slc4a4	intron	ENSMUSG00000060961	ProperStrand	12	1	-inf
chr14	45381557	45381616	LTR	IAPEY3-int	ERVK	chr14IAPEY3-int45379901	NonProperStrand	9	chr6	3201470	3201526	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-6.5801
chr6	49236503	49236617	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr8	84135984	84136006	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	158	1	-7.3969
chr13	53262364	53262478	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	chr9	54589228	54589256	protein_coding	Wdr61	intron	ENSMUSG00000061559	NonProperStrand	11	1	-13.5223
chr17	39846726	39846748	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	73173148	73173268	protein_coding	Pgpep1	utr3	ENSMUSG00000056204	ProperStrand	3	1	-4.3017
chr6	120269288	120269388	SINE	RSINE1	B4	chr6RSINE1120269260	ProperStrand	1	chr6	120269395	120269485	SINE	RSINE1	B4	chr6RSINE1120269384	ProperStrand	1	1	-inf
chr17	39846427	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	106555290	106555370	LTR	RLTR18B	ERVK	chr8RLTR18B106555302	NonProperStrand	4	1	-3.6552
chr4	150246735	150247498	SINE	B1F	Alu	chr4B1F150247442	NonProperStrand	4	chr4	132270128	132270198	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-16.5138
chr14	105124712	105128576	LINE	L1Md_A	L1	chr14L1Md_A105123974	ProperStrand	3	chr17	39847611	39847684	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr7	97177060	97177150	SINE	B1_Mm	Alu	chr7B1_Mm97177024	NonProperStrand	1	chr7	97177188	97177288	SINE	RSINE1	B4	chr7RSINE197177210	NonProperStrand	1	1	-inf
chr10	40258543	40258617	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	55381571	55381655	protein_coding	Rad23b	intron	ENSMUSG00000028426	ProperStrand	31	1	-6.6609
chr1	16101336	16101753	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	chr2	5379294	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0743
chr9	123461822	123461849	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr4	99573351	99573476	protein_coding	Efcab7	intron	ENSMUSG00000073791	ProperStrand	10	1	-4.3847
chr14	31072043	31072094	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr15	98086409	98086508	protein_coding	H1fnt	utr3	ENSMUSG00000048077	ProperStrand	2	1	-17.2134
chr13	50866132	50866222	LINE	L1Md_F2	L1	chr13L1Md_F250865932	ProperStrand	1	chr13	50865852	50865952	LINE	L1_Mur2	L1	chr13L1_Mur250865326	ProperStrand	1	1	-inf
chr13	21911320	21911403	LTR	RLTR4_Mm	ERV1	chr13RLTR4_Mm21911324	ProperStrand	5	chr17	39847284	39847345	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	3	-11.5444
chr17	39847737	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	90362550	90362607	LTR	RMER19B	ERVK	chr3RMER19B90362196	NonProperStrand	3	1	-4.3512
chr19	9016547	9016654	protein_coding	Mta2	utr5	ENSMUSG00000071646	ProperStrand	23	chr19	9006437	9006469	protein_coding	Eml3	intron	ENSMUSG00000071647	ProperStrand	68	1	-13.7127
chr9	21288500	21288558	protein_coding	Dnm2	intron	ENSMUSG00000033335	NonProperStrand	56	chr13	44869632	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.6247
chrX	153499570	153499660	LINE	L1_Mur1	L1	chrXL1_Mur1153499344	NonProperStrand	7	chrX	153499021	153499121	LINE	L1_Mus3	L1	chrXL1_Mus3153494728	ProperStrand	6	1	-inf
chr3	146802128	146802191	LINE	L1_Mus3	L1	chr3L1_Mus3146801855	NonProperStrand	1	chr15	75804885	75804970	protein_coding-noncoding	Zfp707	utr5	ENSMUSG00000034429	NonProperStrand	2	1	-inf
chr1	84793831	84793877	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	chr4	59770924	59770941	protein_coding	E130308A19Rik	utr3	ENSMUSG00000045071	ProperStrand	123	1	-9.1253
chr14	54427210	54428606	LINE	L2	L2	chr14L254427198	ProperStrand	2	chr17	39846411	39846498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr5	135538504	135538580	protein_coding	Wbscr22	intron	ENSMUSG00000005378	ProperStrand	3	chr5	135516041	135516107	protein_coding	Stx1a	intron	ENSMUSG00000007207	NonProperStrand	6	1	-inf
chr9	94524428	94524528	LTR	MLT1A0	MaLR	chr9MLT1A094524356	NonProperStrand	1	chr9	94520538	94520628	LTR	MT2A	ERVL	chr9MT2A94520390	ProperStrand	1	1	-inf
chr17	39846035	39846168	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr16	34357389	34360825	protein_coding	Kalrn	intron	ENSMUSG00000061751	NonProperStrand	17	1	-4.2555
chr1	186575408	186575508	LTR	MLT1C	MaLR	chr1MLT1C186575403	NonProperStrand	1	chr1	186575236	186575326	LTR	MTEa	MaLR	chr1MTEa186575187	ProperStrand	1	1	-inf
chr11	69936382	69936472	LINE	L1_Mm	L1	chr11L1_Mm69934994	ProperStrand	2	chr11	69936474	69936573	LINE	L1_Mm	L1	chr11L1_Mm69936394	ProperStrand	3	2	-inf
chr18	33849458	33849548	LINE	L1_Mur2	L1	chr18L1_Mur233849438	ProperStrand	2	chr18	33849340	33849440	LINE	L1_Mus3	L1	chr18L1_Mus333847746	ProperStrand	8	2	-inf
chr9	4198186	4198276	LINE	L1Md_F2	L1	chr9L1Md_F24198210	ProperStrand	1	chr9	4198001	4198101	LINE	L1_Mus1	L1	chr9L1_Mus14195996	ProperStrand	1	1	-inf
chr2	119711094	119711159	SINE	B1_Mur2	Alu	chr2B1_Mur2119711095	ProperStrand	1	chr17	87435089	87435106	protein_coding	Cript	utr3	ENSMUSG00000024146	NonProperStrand	16	1	-inf
chr9	49884790	49884880	LINE	Lx4B	L1	chr9Lx4B49884789	NonProperStrand	2	chr9	49884557	49884657	LTR	ORR1D1	MaLR	chr9ORR1D149884450	ProperStrand	2	2	-inf
chr19	5801552	5801594	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	87201507	87201619	protein_coding	Rad51c	intron	ENSMUSG00000007646	NonProperStrand	15	2	-11.6248
chr2	31681141	31681231	protein_coding	Fibcd1	intron	ENSMUSG00000026841	ProperStrand	1	chr17	56083797	56083897	protein_coding	Zfp119b	intron	ENSMUSG00000062101	NonProperStrand	8	1	-inf
chr17	39846588	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	99474605	99474622	protein_coding	Racgap1	intron	ENSMUSG00000023015	NonProperStrand	5	1	-3.1907
chr9	42669925	42669998	protein_coding	Grik4	intron	ENSMUSG00000032017	ProperStrand	153	chr12	110694624	110694682	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	1	-7.3275
chrX	20653864	20653908	protein_coding	Spaca5	intron	ENSMUSG00000037167	ProperStrand	23	chr14	122386044	122386114	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-12.6229
chr3	86786894	86786939	DNA	MER2	MER2_type	chr3MER286786682	NonProperStrand	1	chr3	86789478	86789527	LINE	L1_Mus2	L1	chr3L1_Mus286788941	ProperStrand	8	1	-inf
chr1	122357187	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr15	99703615	99703728	protein_coding	Lima1	intron	ENSMUSG00000023022	NonProperStrand	16	1	-11.5920
chr6	71852851	71853186	protein_coding	Ptcd3	exon	ENSMUSG00000063884	NonProperStrand	31	chr5	99978767	99978865	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	119	1	-11.9818
chr17	76475257	76475347	LINE	L1VL4	L1	chr17L1VL476475197	ProperStrand	1	chr17	76475467	76475567	LINE	L1_Mus3	L1	chr17L1_Mus376475445	ProperStrand	1	1	-inf
chr15	64249362	64249452	LTR	ORR1E	MaLR	chr15ORR1E64249346	NonProperStrand	6	chr15	64249233	64249334	SINE	B1_Mur4	Alu	chr15B1_Mur464249208	ProperStrand	6	6	-inf
chr14	63538728	63538808	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	145	chr5	132184481	132184506	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-5.4698
chr11	101318357	101318447	antisense	Gm11626	.	ENSMUSG00000086347	ProperStrand	1	chr11	101317837	101317937	protein_coding	Ifi35	intron	ENSMUSG00000010358	NonProperStrand	1	1	-inf
chr17	56605104	56605157	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	78	chr2	59825655	59825747	protein_coding	Baz2b	intron	ENSMUSG00000026987	NonProperStrand	156	1	-9.5782
chr11	68987469	68987671	LTR	RLTR15	ERVK	chr11RLTR1568987311	NonProperStrand	6	chr11	68987673	68987769	LTR	RLTR28	ERVL	chr11RLTR2868987665	ProperStrand	7	6	-inf
chr6	3201474	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	138332845	138332864	protein_coding	Pla2g2d	intron	ENSMUSG00000041202	ProperStrand	3	1	-9.0398
chr10	121602803	121602893	LINE	L1Md_A	L1	chr10L1Md_A121599362	NonProperStrand	2	chr1	92028009	92028109	protein_coding	Iqca	intron	ENSMUSG00000026301	ProperStrand	175	1	-17.3731
chr13	3825514	3825604	SINE	B3A	B2	chr13B3A3825475	ProperStrand	2	chr8	121391721	121391821	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	2	-inf
chr5	28319481	28319539	LINE	Lx6	L1	chr5Lx628318053	NonProperStrand	1	chr17	39843548	39843576	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr5	30874938	30875849	DNA	MER20	MER1_type	chr5MER2030875732	ProperStrand	4	chr5	30875872	30876132	SINE	B4	B4	chr5B430876005	NonProperStrand	3	3	-inf
chr17	39848621	39848676	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	155722144	155722227	protein_coding	Uqcc	intron	ENSMUSG00000005882	ProperStrand	21	1	-3.5346
chr7	19930876	19930966	protein_coding	Ercc1	utr5	ENSMUSG00000003549	ProperStrand	9	chr19	46433175	46433275	protein_coding	Tmem180	intron	ENSMUSG00000025227	ProperStrand	20	1	-18.3375
chr17	46438101	46438201	protein_coding	Dlk2	intron	ENSMUSG00000047428	NonProperStrand	1	chr1	30861482	30861572	protein_coding	Phf3	exon	ENSMUSG00000048874	ProperStrand	18	1	-inf
chr8	111997601	111998366	LINE	L2c	L2	chr8L2c111998284	NonProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr7	6651593	6651624	SINE	B3	B2	chr7B36651525	ProperStrand	1	chr7	6646740	6646864	protein_coding	Zim1	intron	ENSMUSG00000002266	ProperStrand	65	1	-inf
chr7	109981757	109981829	LINE	L1Md_A	L1	chr7L1Md_A109979001	ProperStrand	1	chr7	109982581	109982613	LINE	L1Md_T	L1	chr7L1Md_T109981821	NonProperStrand	5	1	-inf
chr11	109011745	109011766	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	90102774	90102866	protein_coding	Tbc1d2b	intron	ENSMUSG00000037410	ProperStrand	44	1	-6.7139
chr5	65594929	65595035	protein_coding	Wdr19	intron	ENSMUSG00000037890	ProperStrand	17	chr16	20683438	20683467	protein_coding	Eif4g1	intron	ENSMUSG00000045983	ProperStrand	123	1	-13.1430
chr1	189126294	189126311	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	chr13	97190604	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0707
chr7	112905867	112905967	protein_coding-noncoding	Dchs1	utr3	ENSMUSG00000036862	NonProperStrand	1	chr7	112905750	112905840	protein_coding	Dchs1	intron	ENSMUSG00000036862	NonProperStrand	19	1	-inf
chr14	74861754	74861774	LINE	Lx5	L1	chr14Lx574861563	ProperStrand	1	chr17	39847676	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	121611706	121611741	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	chr9	64177349	64177394	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-5.5992
chr2	139940538	139940574	LTR	RLTR19	ERVK	chr2RLTR19139940401	ProperStrand	2	chr2	139940763	139940869	SINE	B2_Mm1t	B2	chr2B2_Mm1t139940744	ProperStrand	2	2	-inf
chr13	112651391	112652325	LTR	MTD	MaLR	chr13MTD112652075	ProperStrand	1	chr17	39847611	39847652	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846508	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	9413431	9428361	lincRNA	C030034L19Rik	exon	ENSMUSG00000085362	ProperStrand	13	3	-4.6386
chr15	44140828	44140918	LINE	L1MC3	L1	chr15L1MC344140597	ProperStrand	1	chr15	44140445	44140545	Low_complexity	AT_rich	Low_complexity	chr15AT_rich44140457	NonProperStrand	1	1	-inf
chr17	39847478	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	10217813	10217831	protein_coding	Prlr	intron	ENSMUSG00000005268	ProperStrand	11	2	-3.4077
chr14	55098406	55098462	protein_coding	Rem2	exon	ENSMUSG00000022176	ProperStrand	3	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-12.3047
chr7	63944857	63944900	LTR	RLTR6-int	ERV1	chr7RLTR6-int63944003	ProperStrand	3	chr18	69364373	69364406	SINE	B1F2	Alu	chr18B1F269364329	ProperStrand	3	3	-inf
chr17	39843765	39843810	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	40423923	40423965	protein_coding	Crisp3	intron	ENSMUSG00000025433	ProperStrand	10	1	-6.4551
chr4	151660109	151660134	protein_coding	Hes3	utr3	ENSMUSG00000028946	ProperStrand	5	chr6	108452388	108452474	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	1	-13.5963
chr7	6608839	6608926	LTR	ORR1B1	MaLR	chr7ORR1B16608608	NonProperStrand	2	chr10	58516189	58516237	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	1	-17.5337
chr5	115680407	115680508	SINE	B2_Mm1a	B2	chr5B2_Mm1a115680402	ProperStrand	2	chr5	115679986	115680076	SINE	PB1D9	Alu	chr5PB1D9115679975	ProperStrand	2	2	-inf
chr4	53860750	53860774	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr7	103550749	103550881	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-9.8344
chr17	61705611	61705701	DNA	RCHARR1	MER1_type	chr17RCHARR161705578	NonProperStrand	1	chr17	61705708	61705808	LINE	L1_Mur3	L1	chr17L1_Mur361705706	NonProperStrand	1	1	-inf
chr5	140185396	140186188	protein_coding-noncoding	Micall2	utr3	ENSMUSG00000036718	ProperStrand	7	chr5	140185503	140187207	protein_coding	Micall2	intron	ENSMUSG00000036718	ProperStrand	59	7	-inf
chr5	146261140	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	128842415	128842497	protein_coding	Clec2i	intron	ENSMUSG00000030365	NonProperStrand	1	1	-inf
chr17	39846647	39846702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	118385648	118385723	LTR	ORR1E	MaLR	chr4ORR1E118385518	NonProperStrand	1	1	-inf
chr5	146261266	146261319	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr18	63947720	63947779	protein_coding	Wdr7	intron	ENSMUSG00000040560	ProperStrand	39	1	-8.7417
chr4	88781558	88781648	LTR	RMER5	ERV1	chr4RMER588781323	NonProperStrand	1	chr4	88759762	88759862	lincRNA	Gm12602	intron	ENSMUSG00000085569	NonProperStrand	1	1	-inf
chr12	52188001	52188091	LTR	LTR16E2	ERVL	chr12LTR16E252187888	ProperStrand	2	chr12	52188090	52188190	LTR	ORR1D2	MaLR	chr12ORR1D252188102	NonProperStrand	2	2	-inf
chrX	87238364	87238406	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr8	12884701	12884804	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-6.1143
chr7	128379599	128379699	LTR	RLTR18B	ERVK	chr7RLTR18B128379614	NonProperStrand	1	chr7	128379832	128379922	LTR	RLTR18B	ERVK	chr7RLTR18B128379849	NonProperStrand	1	1	-inf
chr17	39846656	39846755	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	21755749	21755796	SINE	B3	B2	chr9B321755686	NonProperStrand	4	1	-3.6552
chr7	101779357	101785421	LINE	L1_Mus4	L1	chr7L1_Mus4101783958	NonProperStrand	1	chr7	101779234	101779324	LTR	MLT1C	MaLR	chr7MLT1C101779187	NonProperStrand	2	1	-inf
chr11	109011655	109011712	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	53643973	53644037	LTR	MTD	MaLR	chr5MTD53643851	ProperStrand	1	1	-inf
chr17	53511219	53511309	LTR	IAPLTR2_Mm	ERVK	chr17IAPLTR2_Mm53510903	ProperStrand	3	chr17	53511350	53511450	LTR	MERVL-int	ERVL	chr17MERVL-int53511349	NonProperStrand	5	3	-inf
chr11	19941210	19941235	SINE	B1F	Alu	chr11B1F19941210	ProperStrand	1	chr11	19936301	19936434	SINE	B4A	B4	chr11B4A19936304	ProperStrand	2	1	-inf
chr10	53650353	53650412	protein_coding	Man1a	intron	ENSMUSG00000003746	ProperStrand	32	chr8	120087767	120087814	protein_coding	Plcg2	intron	ENSMUSG00000034330	NonProperStrand	14	1	-16.2283
chr1	62646574	62646636	protein_coding	Pard3b	intron	ENSMUSG00000052062	NonProperStrand	28	chr11	71019617	71019703	protein_coding	Nlrp1b	intron	ENSMUSG00000070390	NonProperStrand	15	1	-16.4013
chr7	133059317	133059404	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	chr8	106980974	106981025	protein_coding	Ccdc79	intron	ENSMUSG00000052616	NonProperStrand	63	1	-5.0870
chr8	12646990	12647088	protein_coding	Tubgcp3	intron	ENSMUSG00000000759	ProperStrand	46	chr11	35809709	35809739	pseudogene	Gm12125	.	ENSMUSG00000081571	NonProperStrand	2	1	-20.3205
chr13	44869611	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr5	107905231	107905295	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-3.0443
chr5	134298110	134298200	LINE	Lx8	L1	chr5Lx8134298119	ProperStrand	9	chr5	134298014	134298116	SINE	B4A	B4	chr5B4A134297976	NonProperStrand	9	9	-inf
chr5	146261045	146261087	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	28350991	28351043	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-4.3935
chr17	39847728	39847760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	82285811	82286437	protein_coding	Cyp2d9	intron	ENSMUSG00000068086	ProperStrand	3	2	-8.1061
chr17	39846989	39847046	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	41758117	41758164	SINE	ID_B1	B4	chr10ID_B141758042	NonProperStrand	2	1	-5.3533
chr17	63847288	63847320	protein_coding	Fbxl17	intron	ENSMUSG00000023965	ProperStrand	37	chr9	7187187	7187232	protein_coding	Dcun1d5	intron	ENSMUSG00000032002	ProperStrand	9	1	-16.9404
chr5	110469128	110469155	SINE	B2_Mm1t	B2	chr5B2_Mm1t110469081	NonProperStrand	1	chr5	110468952	110468969	SINE	B2_Mm2	B2	chr5B2_Mm2110468928	NonProperStrand	1	1	-inf
chr2	156853219	156853319	protein_coding	9830001H06Rik	exon	ENSMUSG00000055485	NonProperStrand	51	chrX	106194765	106196888	pseudogene	5730416F02Rik	.	ENSMUSG00000081793	ProperStrand	13	3	-inf
chr14	78599000	78599090	LTR	MT2B	ERVL	chr14MT2B78598858	NonProperStrand	1	chr15	63935648	63937359	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	1	-inf
chr1	36871847	36871908	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	chr12	110691247	110691321	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	1	-6.5919
chr12	112789154	112789184	protein_coding	Eif5	intron	ENSMUSG00000021282	NonProperStrand	15	chr9	22012096	22012272	protein_coding	1810064F22Rik	exon	ENSMUSG00000090925	NonProperStrand	7	1	-18.9688
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr2	76560372	76560465	protein_coding	Ttn	intron	ENSMUSG00000051747	NonProperStrand	37	1	-7.5346
chr7	25749163	25749195	SINE	ID_B1	B4	chr7ID_B125749135	ProperStrand	1	chr7	25749729	25749817	SINE	RSINE1	B4	chr7RSINE125749687	ProperStrand	1	1	-inf
chr4	129720835	129722726	antisense	Gm12963	.	ENSMUSG00000085517	ProperStrand	22	chr4	129725646	129727568	protein_coding	Col16a1	intron	ENSMUSG00000040690	NonProperStrand	18	1	-16.5243
chr17	39846352	39846411	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	6224692	6224728	protein_coding	Gm6792	intron	ENSMUSG00000053367	ProperStrand	2	1	-5.3533
chr3	79920303	79920364	DNA	Charlie5	MER1_type	chr3Charlie579919932	ProperStrand	1	chr6	3201503	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr7	126390314	126390370	LINE	Lx8	L1	chr7Lx8126390086	NonProperStrand	1	chr7	126396365	126396431	SINE	MIR	MIR	chr7MIR126396286	ProperStrand	1	1	-inf
chr17	39847251	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	26602783	26602801	protein_coding	Il1rap	intron	ENSMUSG00000022514	NonProperStrand	5	1	-4.3348
chr6	13667724	13667833	LINE	Lx	L1	chr6Lx13666733	ProperStrand	1	chr17	39846884	39846930	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	36544245	36544345	LINE	L1Md_F	L1	chr17L1Md_F36544259	NonProperStrand	1	chr17	36544366	36544456	pseudogene	Gm4256	.	ENSMUSG00000092508	ProperStrand	1	1	-inf
chr2	30069031	30069345	LTR	RLTR19B	ERVK	chr2RLTR19B30068562	ProperStrand	5	chr2	30069340	30069527	SINE	B2_Mm1a	B2	chr2B2_Mm1a30069318	NonProperStrand	6	1	-inf
chr2	127418653	127418743	protein_coding	Mrps5	intron	ENSMUSG00000027374	ProperStrand	9	chr2	127808720	127808820	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	1	-16.5665
chr19	46230850	46230929	protein_coding	Gbf1	intron	ENSMUSG00000025224	ProperStrand	72	chr10	85903199	85903243	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	1	-10.9791
chr11	79719065	79719145	LTR	MTD	MaLR	chr11MTD79719032	NonProperStrand	2	chr11	79718867	79718937	SINE	PB1D10	Alu	chr11PB1D1079718808	ProperStrand	1	1	-inf
chr2	3169022	3169112	DNA	URR1B	MER1_type	chr2URR1B3168914	ProperStrand	1	chr2	3169199	3169299	SINE	B3	B2	chr2B33169130	ProperStrand	1	1	-inf
chr17	39846352	39846387	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	149329752	149329794	LTR	RLTR21	ERVK	chr6RLTR21149329751	NonProperStrand	1	1	-inf
chr4	126202324	126202452	protein_coding	Eif2c4	intron	ENSMUSG00000042500	ProperStrand	92	chr4	126201692	126201712	pseudogene	Gm12934	.	ENSMUSG00000082888	ProperStrand	2	1	-18.5788
chr17	39847763	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	146169935	146169986	antisense	Gm13165	.	ENSMUSG00000086654	NonProperStrand	2	1	-5.4040
chr17	25934778	25934868	lincRNA	Gm17480	intron	ENSMUSG00000091321	NonProperStrand	21	chr17	25932142	25934768	protein_coding	Metrn	exon	ENSMUSG00000002274	ProperStrand	3	3	-inf
chr17	39847981	39848041	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	166567329	166567346	SINE	ID_B1	B4	chr2ID_B1166567267	NonProperStrand	1	1	-inf
chr17	56710182	56710601	protein_coding-noncoding	Safb2	utr3	ENSMUSG00000042625	NonProperStrand	12	chr9	123461884	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr1	171503046	171503107	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr6	125186364	125186383	protein_coding-noncoding	Cd27	utr3	ENSMUSG00000030336	ProperStrand	80	1	-12.5336
chr17	39847659	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	39394482	39394521	LTR	RMER5	ERV1	chr6RMER539394320	ProperStrand	1	1	-inf
chr3	10384451	10384551	protein_coding	Chmp4c	intron	ENSMUSG00000027536	ProperStrand	17	chr17	8379764	8379854	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-16.5187
chr12	109608417	109608545	SINE	B2_Mm2	B2	chr12B2_Mm2109608413	ProperStrand	1	chr12	109614137	109614163	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-inf
chr5	110243583	110243708	LINE	Lx4B	L1	chr5Lx4B110242947	ProperStrand	2	chr2	41344451	41344467	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	85	1	-18.7124
chr17	39847216	39847314	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	77869604	77869640	protein_coding	Rrp1	intron	ENSMUSG00000061032	NonProperStrand	2	1	-6.5615
chr13	109652052	109652100	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr9	106906662	106906729	protein_coding	Dock3	intron	ENSMUSG00000039716	ProperStrand	67	1	-7.7595
chr7	28315213	28315245	protein_coding	Hipk4	intron	ENSMUSG00000040424	NonProperStrand	21	chr17	34935781	34935880	pseudogene	Tnxa	.	ENSMUSG00000092200	ProperStrand	49	1	-14.5616
chr11	57511590	57511651	protein_coding	Galnt10	intron	ENSMUSG00000020520	NonProperStrand	21	chr5	21632809	21632826	protein_coding	Reln	intron	ENSMUSG00000042453	NonProperStrand	79	1	-13.5995
chr18	33850640	33850730	LINE	L1_Mus4	L1	chr18L1_Mus433850603	NonProperStrand	3	chr18	33850478	33850578	LINE	MusHAL1	L1	chr18MusHAL133849939	ProperStrand	1	1	-inf
chr6	58916843	58918772	processed_transcript	BB365896	.	ENSMUSG00000092323	ProperStrand	4	chr13	16987010	16987029	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	1	-17.9811
chr11	69669809	69669845	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr3	89070516	89070622	protein_coding	Dpm3	utr5	ENSMUSG00000042737	ProperStrand	1	1	-inf
chr4	70485934	70486034	LINE	L1_Mur1	L1	chr4L1_Mur170485871	NonProperStrand	1	chr4	70486215	70486305	LINE	Lx8	L1	chr4Lx870486096	ProperStrand	1	1	-inf
chr1	72317618	72317675	lincRNA	D230017M19Rik	intron	ENSMUSG00000085769	ProperStrand	23	chr12	100629705	100629752	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	1	-12.3216
chr6	113571515	113571617	SINE	B3	B2	chr6B3113571520	NonProperStrand	2	chr6	113571383	113571473	SINE	B3A	B2	chr6B3A113571331	NonProperStrand	2	2	-inf
chr1	75859104	75859120	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n75859107	ProperStrand	3	chr10	85890271	85890368	protein_coding	Syn3	intron	ENSMUSG00000059602	ProperStrand	84	1	-17.7153
chr5	110193044	110193104	LINE	Lx3_Mus	L1	chr5Lx3_Mus110192955	NonProperStrand	3	chr5	110189713	110189794	LTR	MTA_Mm-int	MaLR	chr5MTA_Mm-int110188944	NonProperStrand	1	1	-inf
chr8	54894473	54894563	LINE	L1MA4	L1	chr8L1MA454894413	ProperStrand	1	chr8	54894310	54894410	SINE	B3A	B2	chr8B3A54894220	ProperStrand	1	1	-inf
chr5	65559465	65559565	SINE	PB1D9	Alu	chr5PB1D965559465	NonProperStrand	3	chr5	65559328	65559420	protein_coding	Klhl5	utr3	ENSMUSG00000054920	ProperStrand	40	3	-inf
chrX	12801863	12801894	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr9	123461802	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	7	-12.6403
chr6	48071013	48071071	SINE	B2_Mm1a	B2	chr6B2_Mm1a48071013	NonProperStrand	1	chr6	48070905	48070967	Simple_repeat	(TTTTC)n	Simple_repeat	chr6(TTTTC)n48070841	ProperStrand	1	1	-inf
chr5	65666158	65666258	protein_coding	Rfc1	intron	ENSMUSG00000029191	ProperStrand	34	chr13	44869608	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.5961
chr6	115649515	115649605	LTR	RLTR33	ERVK	chr6RLTR33115649477	ProperStrand	3	chr6	115649406	115649506	SINE	B2_Mm1t	B2	chr6B2_Mm1t115649272	ProperStrand	3	3	-inf
chr8	104511223	104511313	LINE	L1_Mus1	L1	chr8L1_Mus1104511128	NonProperStrand	2	chr8	104511433	104511534	LINE	L1_Mus1	L1	chr8L1_Mus1104511128	ProperStrand	2	2	-inf
chr3	28392955	28393055	protein_coding-noncoding	Tnik	utr5	ENSMUSG00000027692	ProperStrand	7	chr3	28392860	28392950	protein_coding	Tnik	intron	ENSMUSG00000027692	ProperStrand	40	7	-inf
chr14	46780120	46780182	LINE	Lx4A	L1	chr14Lx4A46779620	NonProperStrand	7	chr16	19883802	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-13.3257
chr4	74399828	74399914	LINE	L1Md_F2	L1	chr4L1Md_F274399041	NonProperStrand	1	chr17	39848008	39848065	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	109011824	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr19	44307273	44307319	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	1	-3.9925
chr14	19751384	19751453	LINE	L1_Mus1	L1	chr14L1_Mus119749429	ProperStrand	53	chr14	19763774	19763851	LTR	RMER19C	ERVK	chr14RMER19C19763765	ProperStrand	1	1	-inf
chr10	20522387	20522452	LTR	RMER17A	ERVK	chr10RMER17A20521896	NonProperStrand	1	chr10	20520950	20521004	SINE	B1_Mur3	Alu	chr10B1_Mur320520882	NonProperStrand	1	1	-inf
chr14	18270331	18270421	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	56	chr9	72061047	72061147	LTR	RMER4B	ERVK	chr9RMER4B72061003	ProperStrand	1	1	-inf
chr11	55482756	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr18	35565357	35565427	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-9.3866
chr14	73346803	73346893	LINE	L1M2	L1	chr14L1M273346697	NonProperStrand	1	chr14	73346581	73346681	LINE	L1_Mus3	L1	chr14L1_Mus373344169	NonProperStrand	1	1	-inf
chr17	39846462	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	33234979	33235059	SINE	RSINE1	B4	chr2RSINE133234969	NonProperStrand	3	2	-8.0300
chr8	69902466	69902568	LINE	Lx7	L1	chr8Lx769902429	NonProperStrand	1	chr4	104534063	104534108	protein_coding	C8a	intron	ENSMUSG00000035031	NonProperStrand	68	1	-inf
chr17	39846961	39847038	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	104801533	104802473	SINE	B3	B2	chr3B3104802373	ProperStrand	2	1	-5.3533
chr6	72315639	72315741	SINE	B1_Mur2	Alu	chr6B1_Mur272315615	NonProperStrand	3	chr6	72315774	72315864	SINE	B2_Mm2	B2	chr6B2_Mm272315770	NonProperStrand	2	2	-inf
chr6	49236478	49236578	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr2	179957773	179957863	protein_coding	Lama5	intron	ENSMUSG00000015647	ProperStrand	62	2	-14.6731
mmu-miR-690	0	20	miRNA	mmu-miR-690	.	mmu-miR-690	ProperStrand	5	chr1	33724441	33724559	protein_coding	Prim2	intron	ENSMUSG00000026134	NonProperStrand	20	1	-19.9009
chr11	115889912	115889984	SINE	ID_B1	B4	chr11ID_B1115889874	ProperStrand	11	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.0129
chr8	83612330	83612390	LINE	Lx	L1	chr8Lx83610514	NonProperStrand	5	chr11	17221285	17221336	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	1	-18.5166
chr12	81995243	81995297	SINE	B2_Mm2	B2	chr12B2_Mm281995221	NonProperStrand	1	chr12	81952811	81952853	protein_coding	4933426M11Rik	intron	ENSMUSG00000021133	ProperStrand	48	1	-inf
chr5	118613160	118613260	SINE	B2_Mm2	B2	chr5B2_Mm2118613120	ProperStrand	13	chr5	118613032	118613122	SINE	B3A	B2	chr5B3A118613010	NonProperStrand	3	3	-inf
chr2	173023508	173023608	LINE	Lx6	L1	chr2Lx6173020646	ProperStrand	16	chr2	173031879	173031969	LTR	ORR1A2	MaLR	chr2ORR1A2173031686	NonProperStrand	4	4	-inf
chr5	147476277	147476367	LTR	LTR40b	ERVL	chr5LTR40b147476191	NonProperStrand	2	chr5	147476413	147476513	LTR	LTR40b	ERVL	chr5LTR40b147476400	NonProperStrand	2	2	-inf
chr1	71638565	71640306	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	chr8	72419055	72419147	protein_coding	Ndufa13	intron	ENSMUSG00000036199	ProperStrand	28	1	-11.9656
chr7	121998140	121998892	LTR	MTC	MaLR	chr7MTC121998658	NonProperStrand	1	chr15	53326340	53326432	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-inf
chr9	86780813	86780913	LTR	RLTR28	ERVL	chr9RLTR2886780802	NonProperStrand	1	chr9	86780677	86780767	LTR	RMER21B	ERV1	chr9RMER21B86780538	NonProperStrand	1	1	-inf
chr3	10326499	10326548	protein_coding	Impa1	intron	ENSMUSG00000027531	ProperStrand	11	chr13	97190568	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.5318
chr11	6620318	6620418	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	14	chr7	4740823	4740913	protein_coding	2210411K11Rik	exon	ENSMUSG00000030431	NonProperStrand	3	2	-21.7019
chr6	131376035	131376135	LTR	RLTR47_MM	ERV1	chr6RLTR47_MM131375756	ProperStrand	20	chr6	131376095	131379397	LTR	RMER16	ERVK	chr6RMER16131376107	ProperStrand	18	6	-inf
chr1	5842041	5842141	LINE	L1Md_F2	L1	chr1L1Md_F25840036	ProperStrand	1	chr11	30575192	30575282	LTR	RLTR25B	ERVK	chr11RLTR25B30575127	NonProperStrand	1	1	-inf
chr11	54040467	54040567	LINE	Lx4A	L1	chr11Lx4A54040489	NonProperStrand	1	chr11	54040748	54040838	LTR	HERV16-int	ERVL	chr11HERV16-int54040655	NonProperStrand	1	1	-inf
chr1	89555294	89555384	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	chr1	89492258	89492358	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	2	-7.4681
chr8	127188590	127188690	LTR	MTB_Mm	MaLR	chr8MTB_Mm127188591	NonProperStrand	7	chr8	127186555	127186645	protein_coding	2310022B05Rik	intron	ENSMUSG00000031983	NonProperStrand	55	7	-inf
chr11	21247644	21247695	protein_coding	Ugp2	intron	ENSMUSG00000001891	NonProperStrand	19	chr13	89243324	89243347	protein_coding	Edil3	intron	ENSMUSG00000034488	NonProperStrand	21	1	-16.4611
chr11	109011757	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	63897836	63897973	protein_coding	Fign	intron	ENSMUSG00000075324	ProperStrand	77	1	-5.6099
chr13	97190564	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr4	63403670	63403722	protein_coding	Tnfsf15	intron	ENSMUSG00000050395	ProperStrand	5	1	-10.2290
chr5	32492569	32492609	LINE	L1M2	L1	chr5L1M232492283	NonProperStrand	1	chr5	32459346	32478125	protein_coding	Fosl2	utr3	ENSMUSG00000029135	ProperStrand	2	1	-inf
chr12	86950446	86950572	protein_coding	Jdp2	intron	ENSMUSG00000034271	ProperStrand	46	chr3	19146865	19146893	protein_coding	Pde7a	intron	ENSMUSG00000069094	ProperStrand	17	1	-15.1220
chr17	39847804	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	101160049	101160092	protein_coding	Rlim	intron	ENSMUSG00000056537	ProperStrand	5	1	-3.2379
chr3	152219765	152219834	protein_coding	Ak5	intron	ENSMUSG00000039058	NonProperStrand	72	chr9	15314905	15314982	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-10.0881
chr10	122565824	122565914	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	chr12	67667943	67668043	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-11.9364
chr9	123461922	123461964	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	145072243	145072334	protein_coding	Lrmp	intron	ENSMUSG00000030263	NonProperStrand	6	1	-5.4370
chr17	39843346	39843509	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr10	59950069	60003018	protein_coding	Cdh23	intron	ENSMUSG00000012819	ProperStrand	124	3	-4.1772
chr13	93373593	93373716	LINE	L1Md_A	L1	chr13L1Md_A93368952	ProperStrand	6	chr9	123462102	123462132	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr2	145756164	145756254	protein_coding-noncoding	Crnkl1	utr3	ENSMUSG00000001767	NonProperStrand	1	chr2	145756348	145756448	protein_coding	Crnkl1	exon	ENSMUSG00000001767	NonProperStrand	2	1	-inf
chr2	90395156	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr5	114852005	114852026	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-7.0165
chr9	43492716	43492816	LTR	MLT1F1	MaLR	chr9MLT1F143492707	ProperStrand	1	chr9	43493016	43493106	LTR	MLT1F1	MaLR	chr9MLT1F143492991	ProperStrand	1	1	-inf
chr16	25523273	25523373	LTR	RLTRETN_Mm	ERVK	chr16RLTRETN_Mm25523040	ProperStrand	3	chr13	8767070	8767160	protein_coding	Adarb2	utr3	ENSMUSG00000052551	NonProperStrand	42	2	-inf
chr17	25265731	25265802	SINE	ID_B1	B4	chr17ID_B125265744	ProperStrand	1	chr17	25268187	25268214	Simple_repeat	(CA)n	Simple_repeat	chr17(CA)n25268184	NonProperStrand	1	1	-inf
chr17	39846661	39846748	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	28700402	28700450	SINE	PB1D10	Alu	chr17PB1D1028700407	ProperStrand	1	1	-inf
chr17	46811412	46811512	lincRNA	Gm16736	intron	ENSMUSG00000086673	NonProperStrand	106	chr17	46811528	46811618	protein_coding	Klhdc3	utr3	ENSMUSG00000063576	ProperStrand	4	1	-16.6205
chr3	4728803	4728903	LINE	L1Md_F2	L1	chr3L1Md_F24728362	ProperStrand	1	chr18	57546622	57546712	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	1	-inf
chr13	97571192	97571281	SINE	B4A	B4	chr13B4A97571063	NonProperStrand	1	chr13	63546609	63546661	protein_coding	Fancc	intron	ENSMUSG00000021461	ProperStrand	182	1	-inf
chr2	121660922	121661012	LINE	Lx8	L1	chr2Lx8121660824	NonProperStrand	1	chr2	121660743	121660843	LTR	RLTR20B3	ERVK	chr2RLTR20B3121660674	ProperStrand	1	1	-inf
chr12	67667892	67667982	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr1	88695631	88695731	protein_coding	Dis3l2	intron	ENSMUSG00000053333	NonProperStrand	26	1	-13.1383
chr9	123462076	123462147	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	14701984	14702065	protein_coding	Folr4	intron	ENSMUSG00000031933	ProperStrand	1	1	-inf
chr9	9854328	9854348	protein_coding	Cntn5	intron	ENSMUSG00000039488	NonProperStrand	39	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.4942
chr9	123461956	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	93815824	93912897	protein_coding	Magi1	intron	ENSMUSG00000045095	NonProperStrand	20	2	-5.3310
chr5	143684781	143684881	SINE	B3	B2	chr5B3143684730	NonProperStrand	1	chr5	143685220	143685310	SINE	B3A	B2	chr5B3A143685108	ProperStrand	1	1	-inf
chr1	191574837	191574927	protein_coding	Ptpn14	intron	ENSMUSG00000026604	NonProperStrand	26	chr8	89071136	89071236	protein_coding	Abcc12	intron	ENSMUSG00000036872	NonProperStrand	35	1	-14.8131
chr2	90395136	90395174	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr1	71620737	71620816	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	2	-14.5325
chr10	88751431	88751460	LINE	L1_Mus2	L1	chr10L1_Mus288750532	NonProperStrand	1	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-inf
chr7	80198613	80198650	LINE	L1Md_T	L1	chr7L1Md_T80194660	ProperStrand	12	chr7	80198733	80212858	LTR	MTD	MaLR	chr7MTD80212538	ProperStrand	2	1	-inf
chr13	94524635	94524666	LINE	Lx2	L1	chr13Lx294523933	ProperStrand	1	chr17	39846639	39846709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	129616348	129616682	protein_coding	Klrc1	utr3	ENSMUSG00000030167	NonProperStrand	2	chr9	108054221	108054360	protein_coding	Bsn	intron	ENSMUSG00000032589	NonProperStrand	80	2	-inf
chr12	76311717	76311799	SINE	B1_Mus1	Alu	chr12B1_Mus176311648	ProperStrand	1	chr9	123462145	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	93408419	93408442	protein_coding	Traf3ip1	intron	ENSMUSG00000034292	NonProperStrand	54	chr4	44817365	44817398	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	96	1	-11.2898
chr8	3803267	3803340	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	156	chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-4.7669
chr12	54734626	54734716	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr5	147061004	147061104	protein_coding	Cdk8	intron	ENSMUSG00000029635	NonProperStrand	17	1	-12.8981
chr17	39848631	39848664	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	91331563	91331659	protein_coding	Lrp4	intron	ENSMUSG00000027253	NonProperStrand	11	1	-4.7901
chr10	86056504	86056573	LINE	Lx2	L1	chr10Lx286056390	ProperStrand	1	chr6	3201509	3201568	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr7	57680034	57680108	protein_coding	Nell1	intron	ENSMUSG00000055409	ProperStrand	40	1	-10.5383
chr9	123462051	123462118	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	32214679	32214753	pseudogene	Pdxk-ps	.	ENSMUSG00000002791	ProperStrand	20	1	-3.0591
chr2	13786220	13786239	LTR	RLTR10-int	ERVK	chr2RLTR10-int13785493	ProperStrand	1	chr9	123461974	123462097	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	13575562	13578424	protein_coding	St8sia6	utr3	ENSMUSG00000003418	NonProperStrand	14	chr19	38057872	38057930	protein_coding	Myof	intron	ENSMUSG00000048612	NonProperStrand	42	1	-15.7158
chr3	133955218	133955236	LTR	RMER17D2	ERVK	chr3RMER17D2133954650	NonProperStrand	3	chr19	37010612	37010674	protein_coding	Btaf1	intron	ENSMUSG00000040565	NonProperStrand	17	1	-19.8425
chr2	5379293	5379347	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr15	53068441	53151767	protein_coding	Ext1	intron	ENSMUSG00000061731	ProperStrand	117	2	-5.6420
chr14	50158760	50158860	LTR	RMER19C	ERVK	chr14RMER19C50158506	ProperStrand	1	chr4	20179761	20179851	protein_coding	Nkain3	intron	ENSMUSG00000055761	ProperStrand	16	1	-inf
chr13	44869579	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr11	119988178	119988214	protein_coding	Slc38a10	intron	ENSMUSG00000061306	NonProperStrand	60	1	-4.4925
chr13	23436339	23436415	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	chr18	6202747	6202806	protein_coding	Kif5b	utr3	ENSMUSG00000006740	ProperStrand	37	1	-15.0416
chr5	49941861	49941951	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n49941846	NonProperStrand	1	chr5	92773268	92773368	protein_coding	Art3	intron	ENSMUSG00000034842	NonProperStrand	4	1	-inf
chrX	65326066	65326166	LINE	Lx6	L1	chrXLx665326056	NonProperStrand	1	chrX	65325841	65325931	LTR	MLT1J2	MaLR	chrXMLT1J265325760	NonProperStrand	1	1	-inf
chr6	125128074	125128174	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	78	chr13	67407067	67407157	protein_coding	Zfp457	intron	ENSMUSG00000055341	ProperStrand	3	1	-17.9134
chr17	4082624	4082714	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chrX	42305354	42305454	LINE	Lx9	L1	chrXLx942305224	NonProperStrand	1	1	-inf
chr17	39847754	39847813	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	113817379	113817399	LTR	MERVL-int	ERVL	chr5MERVL-int113813487	NonProperStrand	3	1	-4.3512
chr4	148884555	148884640	SINE	B2_Mm1a	B2	chr4B2_Mm1a148884547	NonProperStrand	1	chr4	148884446	148884495	SINE	B4A	B4	chr4B4A148884343	ProperStrand	1	1	-inf
chr2	30294074	30294144	protein_coding-noncoding	Ppp2r4	utr5	ENSMUSG00000039515	ProperStrand	1	chr2	30292953	30293002	protein_coding	Ppp2r4	intron	ENSMUSG00000039515	ProperStrand	13	1	-inf
chr5	106912047	106912134	LINE	HAL1-3A_ME	L1	chr5HAL1-3A_ME106912061	ProperStrand	1	chr5	146261174	146261221	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr4	43492778	43492798	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr7	13260925	13260941	protein_coding	Vmn2r55	intron	ENSMUSG00000091045	ProperStrand	10	1	-10.7418
chr15	10425123	10425213	protein_coding	Rad1	intron	ENSMUSG00000022248	ProperStrand	2	chr15	10434724	10434823	protein_coding	Ttc23l	intron	ENSMUSG00000022249	NonProperStrand	10	1	-20.4467
chr15	81710622	81710697	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	chr17	33955080	33955121	protein_coding	Kank3	exon	ENSMUSG00000042099	NonProperStrand	107	1	-10.3587
chr5	138290834	138291340	LTR	MTA_Mm-int	MaLR	chr5MTA_Mm-int138290165	ProperStrand	1	chr5	138291422	138295874	LTR	MTA_Mm	MaLR	chr5MTA_Mm138291259	ProperStrand	6	1	-inf
chr17	39847951	39847980	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	45804991	45805010	SINE	RSINE1	B4	chr9RSINE145804857	ProperStrand	1	1	-inf
chr1	122357166	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr9	110281285	110281348	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	4	-14.2673
chr9	21923454	21923529	SINE	B1_Mm	Alu	chr9B1_Mm21923387	NonProperStrand	1	chr9	21923596	21923681	SINE	RSINE1	B4	chr9RSINE121923536	NonProperStrand	1	1	-inf
chr17	39847552	39847606	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	35224239	35224294	LTR	RLTR20D	ERVK	chr9RLTR20D35223835	NonProperStrand	1	1	-inf
chr4	107981864	107981954	SINE	B1_Mur3	Alu	chr4B1_Mur3107981811	ProperStrand	2	chr4	107982009	107982109	SINE	ID_B1	B4	chr4ID_B1107981967	ProperStrand	2	2	-inf
chr11	109011745	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	134587461	134587483	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-4.3127
chr10	17124521	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr10	5802391	5802482	protein_coding	Gm221	intron	ENSMUSG00000019767	ProperStrand	29	1	-11.2765
chr7	96723140	96723176	LINE	Lx6	L1	chr7Lx696722851	NonProperStrand	2	chr13	96675881	96675976	LTR	RMER15	ERVL	chr13RMER1596675823	NonProperStrand	1	1	-inf
chr6	38197071	38253965	LTR	RMER4A	ERVK	chr6RMER4A38250619	NonProperStrand	2	chr6	38253919	38254058	LTR	RMER4A	ERVK	chr6RMER4A38253866	NonProperStrand	2	2	-inf
chr17	64617715	64617750	LTR	MER73	ERVL	chr17MER7364617195	NonProperStrand	1	chr8	84474182	84474234	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-inf
chr9	78480097	78480254	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	chr7	3164269	3169082	protein_coding	AU018091	utr5	ENSMUSG00000054753	ProperStrand	34	1	-8.6464
chr5	101901369	101901421	LINE	Lx	L1	chr5Lx101900778	NonProperStrand	3	chr17	39846655	39846696	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr2	10079370	10079418	protein_coding	Itih5	intron	ENSMUSG00000025780	NonProperStrand	14	chr12	79340824	79340862	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	2	-15.6504
chr17	39846336	39846742	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	111070678	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	10	-8.1858
chr11	69669689	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr14	52075073	52075267	protein_coding	Vmn2r89	intron	ENSMUSG00000070448	NonProperStrand	29	1	-10.4838
chr6	29771082	29771172	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	ProperStrand	78	chr6	22030836	22030936	protein_coding	A430107O13Rik	intron	ENSMUSG00000062980	NonProperStrand	3	1	-17.9134
chr1	71051811	71051868	LINE	L1MB5	L1	chr1L1MB571051493	ProperStrand	2	chr17	39846461	39846528	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39846940	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	10340852	10340903	protein_coding	Zfand1	exon	ENSMUSG00000039795	ProperStrand	4	1	-3.6552
chr19	5799196	5799298	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr1	164295813	164295853	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	77	1	-3.9669
chr7	79133682	79133770	SINE	B4	B4	chr7B479133639	ProperStrand	5	chr5	24503015	24503055	protein_coding	1500035N22Rik	intron	ENSMUSG00000059631	ProperStrand	21	1	-19.1315
chr9	17987803	17987828	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr8	111554541	111554582	SINE	B4	B4	chr8B4111554495	NonProperStrand	1	1	-inf
chr16	54492873	54492963	LINE	Lx9	L1	chr16Lx954492823	ProperStrand	1	chr16	54492557	54492657	LTR	RLTR20A	ERVK	chr16RLTR20A54492230	NonProperStrand	1	1	-inf
chr10	42520484	42520538	protein_coding	Sec63	intron	ENSMUSG00000019802	ProperStrand	36	chr10	13424406	13424459	protein_coding	Aig1	intron	ENSMUSG00000019806	ProperStrand	18	1	-15.5157
chr2	152229710	152229795	LTR	ORR1A4	MaLR	chr2ORR1A4152229557	ProperStrand	2	chr19	6059152	6059376	protein_coding	Fau	exon	ENSMUSG00000038274	ProperStrand	58	1	-19.1639
chr17	39847622	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	20108040	20108099	LTR	RLTR13D3	ERVK	chr3RLTR13D320107985	ProperStrand	1	1	-inf
chr12	40493075	40493130	LTR	LTR33C	ERVL	chr12LTR33C40492871	NonProperStrand	2	chr13	100094579	100094654	protein_coding	Ptcd2	intron	ENSMUSG00000021650	ProperStrand	5	1	-inf
chr11	69633297	69633336	SINE	B3A	B2	chr11B3A69633249	ProperStrand	1	chr11	69639397	69640275	protein_coding	Nlgn2	utr3	ENSMUSG00000051790	NonProperStrand	22	1	-inf
chr19	7335626	7335726	SINE	B2_Mm2	B2	chr19B2_Mm27335623	ProperStrand	2	chr19	7335793	7335883	SINE	RSINE1	B4	chr19RSINE17335767	ProperStrand	2	2	-inf
chr11	107040909	107041009	protein_coding	Nol11	intron	ENSMUSG00000018433	ProperStrand	34	chr3	65956883	65957511	protein_coding	Veph1	intron	ENSMUSG00000027831	ProperStrand	30	1	-14.5734
chr9	123461928	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	111261773	111262473	protein_coding	Trank1	intron	ENSMUSG00000062296	NonProperStrand	18	2	-5.6394
chr2	50590810	50590910	LINE	L1M5	L1	chr2L1M550590573	NonProperStrand	1	chr2	50217449	50217539	lincRNA	Gm13483	intron	ENSMUSG00000085862	NonProperStrand	1	1	-inf
chr11	116757702	116757742	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr16	35981715	35981765	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	1	-10.7427
chr17	39846952	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	68772060	68772133	LTR	ORR1A2-int	MaLR	chrXORR1A2-int68770673	NonProperStrand	1	1	-inf
chr4	124918736	124918841	lincRNA	1700041M05Rik	intron	ENSMUSG00000087010	NonProperStrand	22	chr16	31297131	31297147	protein_coding	Apod	utr3	ENSMUSG00000022548	ProperStrand	3	1	-inf
chrX	114391800	114391890	Low_complexity	AT_rich	Low_complexity	chrXAT_rich114391813	NonProperStrand	1	chrX	114391456	114391556	SINE	B1_Mus1	Alu	chrXB1_Mus1114391384	ProperStrand	1	1	-inf
chr12	38861381	38865556	protein_coding	Dgkb	intron	ENSMUSG00000036095	NonProperStrand	29	chr12	79700774	79700904	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-8.3715
chr6	145220230	145220338	SINE	B4A	B4	chr6B4A145220116	NonProperStrand	2	chr9	123462155	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr10	88444177	88444290	protein_coding	Ano4	intron	ENSMUSG00000035189	NonProperStrand	42	chr3	87437026	87437054	protein_coding	Arhgef11	intron	ENSMUSG00000041977	NonProperStrand	3	1	-19.3993
chr5	107798610	107798670	protein_coding	Brdt	intron	ENSMUSG00000029279	NonProperStrand	22	chr13	58392456	58393237	protein_coding	Kif27	intron	ENSMUSG00000060176	ProperStrand	75	1	-13.6099
chrX	103591125	103591226	LINE	L1Md_T	L1	chrXL1Md_T103587214	ProperStrand	2	chr7	110283176	110283212	pseudogene	Olfr587-ps1	.	ENSMUSG00000080891	ProperStrand	1	1	-inf
chr19	60878509	60878609	LTR	RMER13A	ERVK	chr19RMER13A60878128	ProperStrand	1	chr19	60878853	60878943	SINE	PB1D10	Alu	chr19PB1D1060878872	ProperStrand	1	1	-inf
chr6	65985062	65985162	LINE	Lx8	L1	chr6Lx865984880	NonProperStrand	1	chr6	65984785	65984875	LTR	RLTR11A2	ERVK	chr6RLTR11A265984489	ProperStrand	1	1	-inf
chr5	48005686	48005780	LINE	Lx9	L1	chr5Lx948005195	NonProperStrand	1	chr9	86643350	86643395	protein_coding	Prss35	intron	ENSMUSG00000033491	NonProperStrand	8	1	-inf
chr9	123461822	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr5	91972478	91972519	protein_coding	Parm1	intron	ENSMUSG00000034981	ProperStrand	7	1	-5.1121
chr2	33303702	33303762	antisense	Gm13536	.	ENSMUSG00000085742	NonProperStrand	2	chr7	19696294	19696369	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-19.3454
chr17	39848512	39848564	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr9	78198318	78199493	protein_coding	Gsta2	intron	ENSMUSG00000057933	NonProperStrand	15	1	-4.1773
chr8	31149864	31149951	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr16	35981617	35981643	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-9.3859
chr7	62611946	62612046	LINE	L1VL4	L1	chr7L1VL462611889	NonProperStrand	1	chr7	62611631	62611721	LTR	RLTR17	ERVK	chr7RLTR1762611105	ProperStrand	1	1	-inf
chr7	51294336	51294368	LINE	L1_Mus1	L1	chr7L1_Mus151291814	NonProperStrand	1	chr17	39847659	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	89051297	89051397	LINE	L1MC1	L1	chr11L1MC189051185	ProperStrand	1	chr11	89051073	89051163	SINE	B3	B2	chr11B389050962	ProperStrand	1	1	-inf
chr6	105418468	105418568	LINE	L1Md_T	L1	chr6L1Md_T105417586	NonProperStrand	2	chr6	105418583	105418673	LINE	L1_Mur1	L1	chr6L1_Mur1105418582	ProperStrand	1	1	-inf
chr8	33821720	33821792	LTR	MMERVK10C-int	ERVK	chr8MMERVK10C-int33821513	ProperStrand	4	chr11	86722196	86722212	SINE	B1_Mur4	Alu	chr11B1_Mur486722130	NonProperStrand	1	1	-inf
chr4	134812171	134812249	protein_coding	Clic4	intron	ENSMUSG00000037242	ProperStrand	53	chr17	27580211	27580276	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-9.4121
chr17	39847341	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	111437414	111437519	LTR	MTD	MaLR	chrXMTD111437338	ProperStrand	1	1	-inf
chr4	133027009	133027099	LINE	L1MA6	L1	chr4L1MA6133026939	ProperStrand	1	chr17	39847452	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr19	36092738	36092785	protein_coding	Htr7	intron	ENSMUSG00000024798	NonProperStrand	9	chr9	72576465	72576522	protein_coding	Nedd4	intron	ENSMUSG00000032216	ProperStrand	32	2	-20.0237
chr19	8766011	8766029	LTR	RMER17B	ERVK	chr19RMER17B8765400	NonProperStrand	3	chr11	88848742	88848845	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	1	-17.5006
chr18	85698221	85698290	LINE	Lx8	L1	chr18Lx885698131	NonProperStrand	5	chr17	39846462	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-5.8332
chr5	146261174	146261237	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	30336370	30336667	SINE	ID_B1	B4	chr2ID_B130336323	ProperStrand	7	1	-9.4279
chr1	133647379	133647469	protein_coding-noncoding	Slc26a9	utr5	ENSMUSG00000042268	NonProperStrand	4	chr1	133645794	133647383	protein_coding	Slc26a9	intron	ENSMUSG00000042268	NonProperStrand	64	2	-inf
chr11	60537897	60537987	protein_coding-noncoding	Flii	utr3	ENSMUSG00000002812	ProperStrand	3	chr11	60537773	60537873	protein_coding	Flii	intron	ENSMUSG00000002812	ProperStrand	5	3	-inf
chr11	102257941	102259353	protein_coding-noncoding	Rundc3a	utr5	ENSMUSG00000006575	ProperStrand	3	chr13	44869595	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-17.6499
chr2	161049264	161049364	LINE	L1MB8	L1	chr2L1MB8161049290	NonProperStrand	1	chr2	161049031	161049121	SINE	B4	B4	chr2B4161049033	NonProperStrand	1	1	-inf
chr17	67874488	67874578	LTR	MLT1B	MaLR	chr17MLT1B67874496	NonProperStrand	1	chr17	67874382	67874482	SINE	B1F	Alu	chr17B1F67874365	NonProperStrand	1	1	-inf
chr19	7102817	7102851	protein_coding	Stip1	intron	ENSMUSG00000024966	NonProperStrand	53	chr14	7847913	7848037	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	205	1	-9.8084
chr2	91845880	91845997	protein_coding	Creb3l1	intron	ENSMUSG00000027230	NonProperStrand	21	chr4	116620902	116620942	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-12.3658
chrX	102615972	102616004	SINE	B1_Mm	Alu	chrXB1_Mm102615863	NonProperStrand	1	chr1	72244334	72244400	protein_coding	Mreg	intron	ENSMUSG00000039395	NonProperStrand	84	1	-inf
chr17	39848123	39848140	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	168983403	168983530	SINE	MIR	MIR	chr2MIR168983374	NonProperStrand	1	1	-inf
chr7	47188567	47188610	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr11	77847862	77847891	protein_coding	Dhrs13	exon	ENSMUSG00000020834	ProperStrand	5	1	-16.7623
chr17	32209743	32209798	Simple_repeat	(GGGA)n	Simple_repeat	chr17(GGGA)n32209737	NonProperStrand	1	chr5	36914019	36914088	protein_coding	Tbc1d14	exon	ENSMUSG00000029192	NonProperStrand	154	1	-inf
chrX	116599154	116599244	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int116598253	NonProperStrand	1	chrX	116599460	116599560	LTR	MTA_Mm	MaLR	chrXMTA_Mm116599349	NonProperStrand	1	1	-inf
chr1	33496611	33496694	LINE	L1Md_F2	L1	chr1L1Md_F233496105	ProperStrand	2	chr17	39847188	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr2	47638644	47638744	LINE	Lx3A	L1	chr2Lx3A47638308	NonProperStrand	1	chr9	36238702	36238792	LINE	Lx2	L1	chr9Lx236238472	ProperStrand	1	1	-inf
chr8	8649815	8649903	protein_coding	Efnb2	intron	ENSMUSG00000001300	ProperStrand	23	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	1	-15.4315
chr10	81488809	81488914	LINE	L1Md_F2	L1	chr10L1Md_F281486805	ProperStrand	42	chr16	29653323	29653344	protein_coding	Opa1	utr3	ENSMUSG00000038084	ProperStrand	37	1	-13.7218
chr18	7436750	7436777	protein_coding	Mpp7	intron	ENSMUSG00000057440	ProperStrand	99	chr10	89805725	89805742	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	65	1	-10.8550
chr19	6910189	6910261	protein_coding	Rps6ka4	intron	ENSMUSG00000024952	NonProperStrand	6	chr17	30905805	30905892	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	1	-15.9050
chr5	146260998	146261062	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	127532028	127532047	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	118	1	-3.7766
chr14	56678801	56685040	LINE	L1Md_F2	L1	chr14L1Md_F256682484	NonProperStrand	2	chr14	56678747	56684976	protein_coding	Mcpt4	utr3	ENSMUSG00000061068	NonProperStrand	1	1	-inf
chr2	4888682	4888716	SINE	B1F	Alu	chr2B1F4888576	ProperStrand	1	chr2	4887886	4887994	SINE	B3	B2	chr2B34887854	ProperStrand	2	1	-inf
chr16	33058682	33058752	protein_coding-noncoding	Rpl35a	utr5	ENSMUSG00000060636	ProperStrand	14	chr15	76605958	76606038	protein_coding	Arhgap39	intron	ENSMUSG00000033697	ProperStrand	98	2	-20.9517
chr7	47186416	47186493	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	chr6	93775444	93775472	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-9.0783
chr6	3201507	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr13	64198543	64198600	protein_coding	Slc35d2	utr3	ENSMUSG00000033114	ProperStrand	21	1	-4.8667
chr17	39847246	39847362	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	32555952	32555987	SINE	B4	B4	chr3B432555900	ProperStrand	1	1	-inf
chr8	108978103	108978120	LINE	L2a	L2	chr8L2a108977779	ProperStrand	1	chr9	123461882	123461943	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	14641888	14641988	LINE	L1Md_A	L1	chr10L1Md_A14638911	NonProperStrand	1	chr7	47188350	47188440	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	49	1	-inf
chr19	32190121	32190219	LINE	Lx8	L1	chr19Lx832189386	ProperStrand	2	chr19	32189197	32189225	LTR	MTC	MaLR	chr19MTC32188915	ProperStrand	2	1	-19.8939
chr16	36728876	36728966	LINE	L1_Mur3	L1	chr16L1_Mur336728893	NonProperStrand	1	chr16	36728721	36728821	LINE	Lx6	L1	chr16Lx636728347	ProperStrand	1	1	-inf
chr1	151353529	151353608	LTR	IAPLTR1_Mm	ERVK	chr1IAPLTR1_Mm151353421	NonProperStrand	1	chr9	123461931	123461954	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39844599	39844699	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr11	69045958	69046012	protein_coding	Gucy2e	intron	ENSMUSG00000020890	NonProperStrand	22	1	-4.4268
chr4	133999021	133999121	LTR	ORR1C1	MaLR	chr4ORR1C1133998871	ProperStrand	3	chr4	133999114	133999204	LTR	RMER19B	ERVK	chr4RMER19B133999104	NonProperStrand	4	2	-inf
chr17	39847866	39847937	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	89119593	89119625	LTR	MTC	MaLR	chr18MTC89119461	ProperStrand	1	1	-inf
chr8	22211614	22213526	LINE	L1Md_T	L1	chr8L1Md_T22211280	ProperStrand	1	chr8	22216518	22217166	LTR	RMER3D-int	ERVK	chr8RMER3D-int22216434	ProperStrand	2	1	-inf
chr13	26434847	26434947	LINE	Lx2	L1	chr13Lx226434738	ProperStrand	1	chr13	26434631	26434721	LINE	Lx7	L1	chr13Lx726434517	ProperStrand	1	1	-inf
chr7	75541844	75541944	SINE	B3	B2	chr7B375541780	NonProperStrand	1	chr1	85213627	85213717	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	ProperStrand	6	1	-inf
chr12	104760255	104760285	LTR	MTB	MaLR	chr12MTB104760224	NonProperStrand	1	chr12	104760978	104761044	LTR	RLTR25A	ERVK	chr12RLTR25A104760871	ProperStrand	1	1	-inf
chr2	172459409	172459450	LTR	MLT1B	MaLR	chr2MLT1B172459354	NonProperStrand	1	chr2	172459152	172459270	Simple_repeat	(TGG)n	Simple_repeat	chr2(TGG)n172459107	ProperStrand	1	1	-inf
chr13	114072188	114072255	LINE	L1Md_T	L1	chr13L1Md_T114070289	NonProperStrand	45	chr5	146261005	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-5.6243
chr10	18525967	18526035	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int18525694	ProperStrand	1	chr17	39847313	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	134370124	134370224	SINE	B1_Mur1	Alu	chr5B1_Mur1134370111	NonProperStrand	3	chr5	134370245	134370335	Simple_repeat	(GGGA)n	Simple_repeat	chr5(GGGA)n134370267	NonProperStrand	1	1	-inf
chr16	54475429	54475519	LINE	Lx4B	L1	chr16Lx4B54475375	NonProperStrand	1	chr16	54475270	54475370	SINE	B1_Mus2	Alu	chr16B1_Mus254475202	NonProperStrand	1	1	-inf
chr9	123461943	123461967	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	13174882	13174999	protein_coding	Lamp1	utr3	ENSMUSG00000031447	NonProperStrand	11	1	-4.1956
chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	3918627	3918722	protein_coding	Aldh3b1	exon	ENSMUSG00000024885	ProperStrand	3	1	-4.3017
chr5	142720105	142721346	SINE	ID4_	ID	chr5ID4_142720119	ProperStrand	6	chr5	142719993	142720083	Satellite	ZP3AR	Satellite	chr5ZP3AR142719499	ProperStrand	6	6	-inf
chrX	43404259	43404349	LINE	L1M3	L1	chrXL1M343404085	ProperStrand	1	chr9	89325146	89325246	LTR	RMER15-int	ERVL	chr9RMER15-int89324824	ProperStrand	1	1	-inf
chr17	39847676	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	112352560	112352576	protein_coding	Olfr686	exon	ENSMUSG00000048425	NonProperStrand	2	1	-5.4040
chr4	115042237	115042308	LTR	RLTR15	ERVK	chr4RLTR15115042146	ProperStrand	5	chr19	16240201	16240266	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	1	-14.9800
chr17	39846465	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	130735500	130735561	LTR	RLTR19-int	ERVK	chr4RLTR19-int130735206	ProperStrand	1	1	-inf
chr18	17081421	17081521	LTR	MT2A	ERVL	chr18MT2A17081418	NonProperStrand	1	chr18	17080950	17081040	LTR	MTA_Mm	MaLR	chr18MTA_Mm17080954	ProperStrand	1	1	-inf
chr2	30136681	30137303	protein_coding	Lrrc8a	intron	ENSMUSG00000007476	ProperStrand	6	chr3	37129154	37129173	protein_coding	Il21	intron	ENSMUSG00000027718	ProperStrand	1	1	-inf
chr7	93995284	93995302	LINE	L1Md_T	L1	chr7L1Md_T93994338	ProperStrand	4	chr18	39414084	39414100	antisense	Gm15336	.	ENSMUSG00000086312	ProperStrand	6	1	-inf
chr16	50626077	50626167	LTR	ORR1E	MaLR	chr16ORR1E50626025	NonProperStrand	1	chr16	42962641	42962741	protein_coding	Zbtb20	intron	ENSMUSG00000022708	NonProperStrand	23	1	-inf
chr13	9834324	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr5	77361288	77361345	antisense	2310040G07Rik	.	ENSMUSG00000072852	ProperStrand	2	1	-16.5683
chr5	113846903	113846940	Simple_repeat	(CA)n	Simple_repeat	chr5(CA)n113846835	NonProperStrand	1	chr9	123462111	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr1	161035399	161035467	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr17	39847392	39847838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	6	-3.1242
chr12	109545885	109545961	protein_coding	Hhipl1	intron	ENSMUSG00000021260	ProperStrand	179	chr13	38501508	38501564	protein_coding	Bmp6	intron	ENSMUSG00000039004	NonProperStrand	47	1	-10.3216
chr8	91635188	91635223	LINE	Lx8	L1	chr8Lx891634645	NonProperStrand	5	chr5	132030601	132030646	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-12.3598
chr3	62159170	62159226	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	chr4	141344657	141344723	protein_coding	Dnajc16	intron	ENSMUSG00000040697	NonProperStrand	24	1	-14.7525
chr4	130388601	130388645	SINE	PB1D10	Alu	chr4PB1D10130388590	NonProperStrand	3	chr17	39843655	39843709	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	3	-inf
chr13	4528064	4528081	LINE	L1VL4	L1	chr13L1VL44527230	NonProperStrand	1	chr6	3201498	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr13	31683638	31683730	DNA	Charlie1	MER1_type	chr13Charlie131682760	NonProperStrand	3	chr17	39846816	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-8.0300
chr2	73395564	73395654	LINE	L1MB4	L1	chr2L1MB473395550	NonProperStrand	3	chr2	73395683	73395783	LTR	RLTR40	ERVK	chr2RLTR4073395697	NonProperStrand	3	3	-inf
chr15	81793743	81793843	SINE	B1_Mur4	Alu	chr15B1_Mur481793749	ProperStrand	4	chr15	81793664	81793754	Simple_repeat	(GAAAA)n	Simple_repeat	chr15(GAAAA)n81793668	ProperStrand	4	4	-inf
chr17	39847244	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	120804130	120807600	protein_coding	Bcl2l13	intron	ENSMUSG00000009112	ProperStrand	2	1	-6.5615
chr10	34359996	34360055	LINE	L1Md_F2	L1	chr10L1Md_F234359379	ProperStrand	1	chr16	16329897	16329949	protein_coding	Dnm1l	exon	ENSMUSG00000022789	ProperStrand	30	1	-inf
chr14	47416512	47418112	LTR	MMERVK10C-int	ERVK	chr14MMERVK10C-int47416083	NonProperStrand	4	chr17	39847440	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr11	46451427	46451527	lincRNA	Gm4926	intron	ENSMUSG00000086909	NonProperStrand	1	chr11	113677304	113677394	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	1	-inf
chr12	33251795	33251870	LTR	ORR1B2-int	MaLR	chr12ORR1B2-int33251803	NonProperStrand	1	chr7	126795793	126795995	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-inf
chr6	47583572	47583632	SINE	B3	B2	chr6B347583559	NonProperStrand	1	chr9	123462089	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	27189077	27189177	LINE	L1MD2	L1	chr6L1MD227189060	NonProperStrand	1	chr2	13290733	13290823	protein_coding	Cubn	intron	ENSMUSG00000026726	NonProperStrand	6	1	-inf
chr12	110694270	110694300	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	chr1	58405939	58406009	protein_coding	Aox3l1	intron	ENSMUSG00000079554	ProperStrand	31	1	-10.5271
chr11	109011786	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	123095420	123095438	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	10	2	-15.5253
chr17	39847716	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	25003396	25013698	LTR	MT2B	ERVL	chr17MT2B25013688	NonProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr17	70963681	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-4.0748
chr17	39846468	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	82689185	82689203	lincRNA	C430014B12Rik	intron	ENSMUSG00000085879	ProperStrand	2	1	-5.3533
chr6	90795981	90796002	LINE	L1MEc	L1	chr6L1MEc90795673	ProperStrand	1	chr17	39847277	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	109011645	109011693	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	116871218	116871277	LINE	L1Md_F2	L1	chr3L1Md_F2116869942	NonProperStrand	2	1	-13.5345
chr15	90511460	90511560	LINE	L1ME1	L1	chr15L1ME190511119	ProperStrand	1	chr15	90511745	90511835	Simple_repeat	(TA)n	Simple_repeat	chr15(TA)n90511764	NonProperStrand	1	1	-inf
chr17	39847636	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	122426935	122427045	LTR	ORR1B1-int	MaLR	chr8ORR1B1-int122426783	ProperStrand	3	2	-8.1061
chr17	56286042	56286132	SINE	ID_B1	B4	chr17ID_B156286063	ProperStrand	4	chr17	56285922	56286022	SINE	RSINE1	B4	chr17RSINE156285940	ProperStrand	3	3	-inf
chr2	10408040	10408143	miRNA	Mir466b-4	.	ENSMUSG00000077035	ProperStrand	4	chr2	10407909	10408246	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	4	-inf
chr5	35571774	35571864	Other	RMER1B	Other	chr5RMER1B35571198	ProperStrand	1	chr5	35572050	35572150	SINE	ID4	ID	chr5ID435572078	ProperStrand	1	1	-inf
chr13	44743889	44743915	Low_complexity	GA-rich	Low_complexity	chr13GA-rich44743865	ProperStrand	2	chr13	44746593	44746629	SINE	ID_B1	B4	chr13ID_B144746545	ProperStrand	1	1	-inf
chr9	70128469	70128529	protein_coding	Myo1e	intron	ENSMUSG00000032220	NonProperStrand	28	chr2	5379283	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.0377
chr8	104357604	104357706	LINE	Lx6	L1	chr8Lx6104356584	NonProperStrand	1	chr8	104357804	104357894	LTR	ORR1A2-int	MaLR	chr8ORR1A2-int104357821	NonProperStrand	3	1	-inf
chr11	109011748	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr18	34864345	34864364	protein_coding	Gfra3	intron	ENSMUSG00000024366	ProperStrand	4	1	-11.7441
chr17	83423857	83423957	LINE	L1MC4	L1	chr17L1MC483423697	ProperStrand	1	chr17	39847160	39847180	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chrX	10184726	10184816	LINE	L1MA9	L1	chrXL1MA910184725	NonProperStrand	1	chrX	10184603	10184703	LINE	L1ME3	L1	chrXL1ME310184424	NonProperStrand	1	1	-inf
chr10	23785342	23785822	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr17	39846352	39846887	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	22	-7.3412
chr11	119153937	119155125	protein_coding-noncoding	Eif4a3	utr3	ENSMUSG00000025580	ProperStrand	3	chr11	119153795	119156074	protein_coding	Eif4a3	intron	ENSMUSG00000025580	ProperStrand	7	3	-inf
chr3	19243192	19256858	LINE	L1Md_F	L1	chr3L1Md_F19255878	NonProperStrand	3	chr3	19243086	19243186	SINE	B3A	B2	chr3B3A19243110	ProperStrand	2	2	-inf
chr17	39847519	39847594	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	129791870	129791926	LTR	RLTR20D	ERVK	chr5RLTR20D129791639	ProperStrand	2	1	-5.4040
chr4	43184139	43184229	protein_coding-noncoding	Unc13b	utr5	ENSMUSG00000028456	ProperStrand	3	chr4	43184291	43184391	protein_coding	Unc13b	intron	ENSMUSG00000028456	ProperStrand	85	2	-20.6321
chr17	39846470	39846532	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	155885277	155885300	SINE	RSINE1	B4	chr2RSINE1155885254	NonProperStrand	3	2	-8.0300
chr9	114555815	114555915	LTR	MTD	MaLR	chr9MTD114555623	ProperStrand	2	chr9	114555555	114555645	SINE	B1_Mus1	Alu	chr9B1_Mus1114555482	ProperStrand	2	2	-inf
chrX	98653785	98653885	SINE	B4	B4	chrXB498653773	NonProperStrand	1	chrX	98653330	98653420	SINE	B4A	B4	chrXB4A98653350	NonProperStrand	1	1	-inf
chr1	161035399	161035465	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr14	11666193	11666249	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-8.2788
chr8	84476535	84476594	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr10	63294893	63294931	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-4.3094
chr14	16366590	16366680	LTR	IAP-d-int	ERVK	chr14IAP-d-int16366545	ProperStrand	1	chr14	16366889	16366989	LTR	IAP-d-int	ERVK	chr14IAP-d-int16366698	ProperStrand	1	1	-inf
chr13	44869595	44870014	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr10	62945273	63245898	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	2	-4.2800
chrX	116753574	116753664	LINE	Lx	L1	chrXLx116753529	ProperStrand	1	chrX	116753323	116753423	LINE	Lx4A	L1	chrXLx4A116753285	ProperStrand	1	1	-inf
chr17	39846603	39846671	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	25702955	25703028	protein_coding	Ido1	intron	ENSMUSG00000031551	NonProperStrand	4	1	-3.6552
chr9	44138451	44138470	protein_coding	Dpagt1	intron	ENSMUSG00000032123	NonProperStrand	3	chr17	55892561	55892671	protein_coding	Emr4	intron	ENSMUSG00000032915	ProperStrand	15	1	-21.4444
chr17	63887035	63887135	LINE	Lx9	L1	chr17Lx963886961	NonProperStrand	1	chr17	63886821	63886911	LTR	ORR1A1	MaLR	chr17ORR1A163886621	NonProperStrand	1	1	-inf
chr1	150638662	150638752	LINE	L1M2	L1	chr1L1M2150638662	NonProperStrand	1	chr1	150638264	150638364	LINE	L1Md_F3	L1	chr1L1Md_F3150637658	NonProperStrand	1	1	-inf
chr14	100052929	100053030	LINE	L1Md_T	L1	chr14L1Md_T100048550	NonProperStrand	8	chr6	6191310	6217035	lincRNA	RP23-360N5.1	exon	ENSMUSG00000093482	NonProperStrand	44	5	-inf
chr15	86411334	86411444	LTR	MTB	MaLR	chr15MTB86411230	ProperStrand	1	chr17	39847659	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr8	18913606	18913696	LINE	L1Md_F2	L1	chr8L1Md_F218913620	ProperStrand	1	chr17	39847629	39847730	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	18038680	18038740	LTR	RLTR11A2	ERVK	chr12RLTR11A218038537	ProperStrand	1	chr17	39847216	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr12	111671344	111671374	LTR	RLTR16	ERVK	chr12RLTR16111671142	NonProperStrand	1	chr17	39847879	39847919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr14	12235094	12235120	LINE	L1_Rod	L1	chr14L1_Rod12234927	NonProperStrand	1	chr5	23238802	23238832	LTR	MER31A	ERV1	chr5MER31A23238772	ProperStrand	1	1	-inf
chr17	39847611	39847643	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	102128584	102128686	protein_coding	Espl1	intron	ENSMUSG00000058290	NonProperStrand	3	1	-4.3512
chr8	72384842	72386868	protein_coding	Pbx4	intron	ENSMUSG00000031860	NonProperStrand	116	chr13	44869583	44869701	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-5.5845
chr16	37061728	37061745	protein_coding	Polq	utr3	ENSMUSG00000034206	NonProperStrand	1	chr8	84547930	84548017	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-inf
chr5	110703225	110703325	antisense	Gm15788	.	ENSMUSG00000087439	NonProperStrand	5	chr5	110703328	110703418	protein_coding	Pxmp2	utr3	ENSMUSG00000029499	ProperStrand	17	1	-19.2464
chr5	110409348	110409448	LINE	L1Md_T	L1	chr5L1Md_T110408455	NonProperStrand	12	chr5	110409441	110409531	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110409450	NonProperStrand	6	4	-inf
chr17	39847262	39847352	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	105737226	105737326	Low_complexity	CT-rich	Low_complexity	chr5CT-rich105737151	ProperStrand	1	1	-inf
chr2	94061446	94061538	LINE	HAL1b	L1	chr2HAL1b94061439	NonProperStrand	2	chr14	55634362	55634378	protein_coding	Ngdn	utr5	ENSMUSG00000022204	NonProperStrand	18	1	-21.0482
chr19	14505502	14505592	DNA	URR1A	MER1_type	chr19URR1A14505512	NonProperStrand	3	chr19	14505370	14505470	SINE	B2_Mm1t	B2	chr19B2_Mm1t14505324	NonProperStrand	1	1	-inf
chr3	35987339	35987439	protein_coding-noncoding	Acad9	utr5	ENSMUSG00000027710	NonProperStrand	2	chr3	35987442	35987532	protein_coding	Acad9	exon	ENSMUSG00000027710	NonProperStrand	35	1	-19.6352
chr9	123461935	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	126948344	126948376	protein_coding	Pgbd5	intron	ENSMUSG00000050751	NonProperStrand	5	1	-5.8308
chr17	39846658	39846706	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	150165232	150165281	LTR	RLTR11A	ERVK	chr5RLTR11A150165015	NonProperStrand	1	1	-inf
chr4	33918260	33918350	LTR	MTD-int	MaLR	chr4MTD-int33918191	ProperStrand	1	chr4	33918379	33918479	LTR	MTD	MaLR	chr4MTD33918378	ProperStrand	1	1	-inf
chr15	77123702	77123766	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	chr3	144555078	144555150	protein_coding	Gm6289	intron	ENSMUSG00000074196	ProperStrand	31	1	-11.5855
chr12	105617002	105617102	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int105616174	NonProperStrand	10	chr12	105617164	105617254	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int105617173	NonProperStrand	7	7	-inf
chr1	36077543	36077608	SINE	B1_Mm	Alu	chr1B1_Mm36077487	ProperStrand	2	chr4	149717185	149717260	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	1	-16.4679
chrX	7259133	7259163	SINE	B3A	B2	chrXB3A7259061	NonProperStrand	1	chr4	115811453	115811473	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	1	-inf
chr2	9989091	9989143	protein_coding	Atp5c1	intron	ENSMUSG00000025781	ProperStrand	8	chr7	28352188	28352368	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-15.4636
chr6	128409514	128409589	lincRNA	Gm10069	intron	ENSMUSG00000059659	NonProperStrand	13	chr19	4446450	4446505	protein_coding	Syt12	utr3	ENSMUSG00000049303	ProperStrand	3	1	-22.9476
chr8	69915458	69915548	LINE	L1Md_F2	L1	chr8L1Md_F269915419	NonProperStrand	3	chr8	69915340	69915440	LTR	ORR1B2	MaLR	chr8ORR1B269915068	NonProperStrand	1	1	-inf
chr1	89539987	89540076	protein_coding-noncoding	Inpp5d	utr5	ENSMUSG00000026288	ProperStrand	11	chr2	39043207	39043256	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	1	-15.2703
chr15	59064086	59064184	LTR	ORR1A3-int	MaLR	chr15ORR1A3-int59064071	ProperStrand	5	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr14	99956697	99956770	LINE	L1M2	L1	chr14L1M299956418	ProperStrand	3	chr14	99958772	99958819	LINE	L1_Mus3	L1	chr14L1_Mus399958407	NonProperStrand	5	3	-inf
chr13	110033350	110033378	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr8	11775807	11775896	protein_coding	Arhgef7	intron	ENSMUSG00000031511	ProperStrand	147	1	-6.2033
chr17	4082116	4082206	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr1	20486950	20487050	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	24	2	-15.0815
chr16	35981720	35981762	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr9	21508312	21508961	protein_coding	Smarca4	utr3	ENSMUSG00000032187	NonProperStrand	9	2	-inf
chr1	56340452	56340542	DNA	MER58A	MER1_type	chr1MER58A56340416	NonProperStrand	1	chr1	56340224	56340324	LINE	L1MB1	L1	chr1L1MB156340087	NonProperStrand	1	1	-inf
chr17	39847391	39848047	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	45346511	45346636	protein_coding	Exosc3	intron	ENSMUSG00000028322	ProperStrand	19	4	-4.9446
chr11	102253773	102253866	LINE	L1M4b	L1	chr11L1M4b102253674	ProperStrand	2	chr11	102251252	102251279	LTR	ORR1B1	MaLR	chr11ORR1B1102251158	ProperStrand	2	2	-inf
chr9	58656916	58656968	LINE	Lx8	L1	chr9Lx858656559	ProperStrand	2	chr9	58657121	58657175	LINE	Lx8	L1	chr9Lx858657042	ProperStrand	1	1	-inf
chr7	109562063	109562135	protein_coding	Stim1	intron	ENSMUSG00000030987	NonProperStrand	49	chr5	76939734	76939751	protein_coding	Gm7271	intron	ENSMUSG00000091204	ProperStrand	2	1	-19.6220
chr15	58902973	58903063	protein_coding	Mtss1	intron	ENSMUSG00000022353	NonProperStrand	27	chr14	27432386	27432486	protein_coding	Fam116a	intron	ENSMUSG00000040818	ProperStrand	34	2	-inf
chr17	39847183	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	127116345	127116464	protein_coding-noncoding	Stard7	utr5	ENSMUSG00000027367	NonProperStrand	3	1	-5.4882
chr4	87993677	87993790	protein_coding-noncoding	BC057079	utr5	ENSMUSG00000038368	NonProperStrand	2	chr4	87991064	87991109	protein_coding	BC057079	intron	ENSMUSG00000038368	NonProperStrand	76	1	-19.1893
chr15	80078527	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr6	84662625	84662724	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-5.9021
chr17	39846932	39847005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	23973769	23973789	protein_coding	Bcl6	intron	ENSMUSG00000022508	ProperStrand	5	1	-3.1907
chr17	39846747	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	49261149	49261254	LTR	RMER6A	ERVK	chr6RMER6A49261136	ProperStrand	5	1	-3.1907
chr4	93473459	93473549	LINE	L1_Mus1	L1	chr4L1_Mus193473441	ProperStrand	1	chr4	93473251	93473351	LTR	ORR1B2	MaLR	chr4ORR1B293473223	ProperStrand	1	1	-inf
chr1	16569227	16569253	protein_coding	Ube2w	intron	ENSMUSG00000025939	ProperStrand	15	chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	1	-14.2943
chr3	157573283	157573348	protein_coding	Cth	intron	ENSMUSG00000028179	NonProperStrand	1	chr13	97190561	97190604	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr15	102296787	102298228	lincRNA	Gm17403	intron	ENSMUSG00000090630	NonProperStrand	27	chr1	55619798	55619818	protein_coding	Plcl1	intron	ENSMUSG00000038349	ProperStrand	14	1	-16.5572
chr19	55451459	55451564	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	272	chr14	63176515	63176551	protein_coding	Fam124a	intron	ENSMUSG00000035184	NonProperStrand	41	1	-9.7609
chr6	93294933	93295033	LINE	Lx8	L1	chr6Lx893294678	NonProperStrand	1	chr6	93295147	93295237	Simple_repeat	(TA)n	Simple_repeat	chr6(TA)n93295033	NonProperStrand	1	1	-inf
chr7	69717629	69717729	LINE	L1Md_F2	L1	chr7L1Md_F269717621	ProperStrand	1	chr14	35942409	35942499	protein_coding	Grid1	intron	ENSMUSG00000041078	NonProperStrand	14	1	-inf
chr15	85249776	85249883	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr19	17137460	17137488	protein_coding	Prune2	intron	ENSMUSG00000039126	ProperStrand	33	1	-10.5091
chr16	96048475	96048575	DNA	MER20	MER1_type	chr16MER2096048426	NonProperStrand	1	chr16	96048640	96048730	Low_complexity	GA-rich	Low_complexity	chr16GA-rich96048592	NonProperStrand	1	1	-inf
chr13	9834305	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr10	128485065	128485093	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n128485016	ProperStrand	1	1	-inf
chr7	28281181	28281271	SINE	B1_Mur4	Alu	chr7B1_Mur428281182	NonProperStrand	5	chr7	28281260	28281361	SINE	B2_Mm2	B2	chr7B2_Mm228281272	ProperStrand	5	5	-inf
chr17	39843483	39843580	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr12	106871692	106871709	protein_coding	Atg2b	intron	ENSMUSG00000041341	ProperStrand	1	1	-inf
chrX	103473157	103473203	LINE	L1Md_F2	L1	chrXL1Md_F2103469145	NonProperStrand	25	chr16	37530358	37530394	protein_coding	Gtf2e1	intron	ENSMUSG00000022828	ProperStrand	19	1	-16.1262
chr3	138536561	138536628	protein_coding	Tspan5	intron	ENSMUSG00000028152	ProperStrand	84	chr4	149128769	149128856	protein_coding	Slc25a33	intron	ENSMUSG00000028982	ProperStrand	14	1	-14.3097
chr8	84583164	84583209	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr11	43708777	43708871	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	1	-6.4199
chr12	101952305	101952404	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	chr17	30462571	30462610	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-6.2488
chr6	30494774	30497196	protein_coding-noncoding	Cpa2	utr5	ENSMUSG00000071553	NonProperStrand	1	chr6	30492655	30494770	protein_coding	Cpa2	intron	ENSMUSG00000071553	NonProperStrand	13	1	-inf
chr13	36371318	36371336	protein_coding	Fars2	intron	ENSMUSG00000021420	NonProperStrand	24	chr13	112578231	112578308	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-5.9916
chr1	177778244	177778322	LTR	MERVL-int	ERVL	chr1MERVL-int177773176	NonProperStrand	7	chr2	90395136	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-14.1479
chr2	22744878	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr18	34910920	34911045	protein_coding	Cdc25c	utr5	ENSMUSG00000044201	ProperStrand	42	3	-16.9122
chr1	136364891	136364970	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr17	87688972	87689020	protein_coding	Ttc7	intron	ENSMUSG00000036918	ProperStrand	70	1	-10.0697
chr14	120946865	120946902	LINE	L1_Mus2	L1	chr14L1_Mus2120945935	NonProperStrand	12	chr7	65314703	65314803	LINE	L1Md_A	L1	chr7L1Md_A65312566	NonProperStrand	10	1	-18.8836
chr9	104415480	104415570	LINE	L1MD	L1	chr9L1MD104415456	ProperStrand	1	chr9	104415033	104415133	LINE	Lx3C	L1	chr9Lx3C104414937	ProperStrand	1	1	-inf
chr11	16754830	16754848	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	chr5	140441548	140441686	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	81	1	-13.3612
mmu-miR-294-3p	0	21	miRNA	mmu-miR-294-3p	.	mmu-miR-294-3p	ProperStrand	6	chr13	93435182	93435240	protein_coding	Serinc5	intron	ENSMUSG00000021703	NonProperStrand	22	1	-19.1831
chr13	55326395	55326495	protein_coding	Nsd1	intron	ENSMUSG00000021488	NonProperStrand	62	chr13	67407068	67407158	protein_coding	Zfp457	intron	ENSMUSG00000055341	NonProperStrand	2	1	-19.7188
chr8	110915915	110916015	LTR	MT2A	ERVL	chr8MT2A110915836	ProperStrand	1	chr8	110915739	110915829	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n110915760	ProperStrand	1	1	-inf
chr10	122565743	122565833	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	chr1	159096886	159096986	protein_coding	Rasal2	intron	ENSMUSG00000070565	ProperStrand	9	1	-17.0624
chr11	88634287	88634339	LINE	L1_Mus4	L1	chr11L1_Mus488634289	ProperStrand	2	chr17	39847173	39847234	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chrX	165898649	165898739	lincRNA	Gm15245	intron	ENSMUSG00000087587	NonProperStrand	1	chr15	72994498	72994598	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	1	-inf
chr7	5531764	5531864	LINE	L1_Mus2	L1	chr7L1_Mus25531626	ProperStrand	1	chr10	122565826	122565916	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-inf
chr11	63985160	63985250	lincRNA	Gm12290	intron	ENSMUSG00000087622	NonProperStrand	12	chr10	10507463	10507563	protein_coding	Grm1	intron	ENSMUSG00000019828	ProperStrand	13	1	-18.6827
chr6	31294463	31294563	LINE	L1M4b	L1	chr6L1M4b31293113	NonProperStrand	1	chr6	31294734	31294824	SINE	ID_B1	B4	chr6ID_B131294697	ProperStrand	1	1	-inf
chr18	34809426	34810270	protein_coding-noncoding	Cdc23	utr3	ENSMUSG00000024370	NonProperStrand	9	chr7	28351087	28352255	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-15.2129
chr13	112578184	112578267	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr12	81495922	81495939	protein_coding	Dcaf5	intron	ENSMUSG00000049106	ProperStrand	69	1	-3.9428
chr7	140878215	140878305	protein_coding	Uros	utr3	ENSMUSG00000030979	ProperStrand	9	chr9	119270677	119270729	protein_coding	Xylb	intron	ENSMUSG00000035769	NonProperStrand	58	1	-15.9920
chr17	78932228	78932278	protein_coding	Vit	intron	ENSMUSG00000024076	NonProperStrand	35	chr19	4739592	4739632	protein_coding	Spnb3	exon	ENSMUSG00000067889	ProperStrand	17	1	-15.6790
chr3	136839248	136839311	LINE	L1_Mur3	L1	chr3L1_Mur3136838522	NonProperStrand	4	chr15	86057751	86057769	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	1	-14.4692
chr15	102299807	102299867	lincRNA	Gm17403	intron	ENSMUSG00000090630	NonProperStrand	27	chr19	53390552	53390602	protein_coding	Mxi1	intron	ENSMUSG00000025025	NonProperStrand	5	1	-19.0948
chr12	78350926	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	135463262	135463314	protein_coding	Cldn3	utr3	ENSMUSG00000070473	NonProperStrand	1	1	-inf
chr2	136948266	136948342	LINE	L1MB2	L1	chr2L1MB2136948256	NonProperStrand	2	chr2	136948123	136948202	LINE	L3	CR1	chr2L3136948030	ProperStrand	1	1	-inf
chr5	114852004	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr6	90718586	90718698	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	1	-6.8851
chr17	39847804	39847838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	77117841	77117959	SINE	B2_Mm2	B2	chr10B2_Mm277117831	ProperStrand	1	1	-inf
chr16	91359591	91359681	DNA	Tigger5	MER2_type	chr16Tigger591359563	NonProperStrand	1	chr16	91359289	91359389	LTR	MLT1B	MaLR	chr16MLT1B91359314	ProperStrand	1	1	-inf
chr17	39847284	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	75189623	75190380	processed_transcript	Ankzf1	.	ENSMUSG00000026199	NonProperStrand	1	1	-inf
chr9	63738220	63738310	SINE	B4	B4	chr9B463738176	ProperStrand	3	chr9	63738044	63738144	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n63737985	NonProperStrand	3	3	-inf
chr17	39845852	39845942	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	107169821	107169921	antisense	1700082M22Rik	.	ENSMUSG00000023737	ProperStrand	11	1	-5.1180
chr5	35767193	35767242	Simple_repeat	(TATG)n	Simple_repeat	chr5(TATG)n35767162	ProperStrand	1	chr13	81686713	81686734	protein_coding	Gpr98	intron	ENSMUSG00000069170	ProperStrand	77	1	-inf
chr13	114037629	114037713	LINE	L1Md_F2	L1	chr13L1Md_F2114037570	ProperStrand	1	chr17	39846462	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	34912990	34913045	protein_coding	Rbpms	intron	ENSMUSG00000031586	ProperStrand	74	chr13	97190561	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.7172
chr12	84963642	84963716	LTR	RMER6B	ERVK	chr12RMER6B84963516	ProperStrand	1	chr12	84964477	84964544	SINE	RSINE1	B4	chr12RSINE184964424	ProperStrand	1	1	-inf
chr11	29374063	29374138	protein_coding	Ccdc88a	intron	ENSMUSG00000032740	ProperStrand	17	chr9	31089904	31089961	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	1	-12.7193
chr8	48138337	48138443	protein_coding	Enpp6	intron	ENSMUSG00000038173	ProperStrand	45	chr15	82204188	82204230	protein_coding	Cyp2d22	exon	ENSMUSG00000061740	NonProperStrand	48	1	-13.0530
chr1	14397315	14397339	SINE	B4	B4	chr1B414397250	ProperStrand	1	chr14	63887520	63887644	protein_coding	Gata4	intron	ENSMUSG00000021944	NonProperStrand	33	1	-inf
chr3	59144797	59144872	protein_coding	Igsf10	intron	ENSMUSG00000036334	NonProperStrand	5	chr3	59103576	59103661	protein_coding	Med12l	intron	ENSMUSG00000056476	ProperStrand	30	1	-18.5676
chr9	21074634	21074660	protein_coding	Atg4d	intron	ENSMUSG00000002820	NonProperStrand	28	chr9	110281285	110281348	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.0952
chr6	51570828	51570878	LTR	RMER10B	ERVL	chr6RMER10B51570811	NonProperStrand	1	chr6	51571245	51571307	LTR	RMER10B	ERVL	chr6RMER10B51571028	NonProperStrand	1	1	-inf
chr11	4539839	4539913	protein_coding	Ascc2	intron	ENSMUSG00000020412	NonProperStrand	40	chr1	89321949	89321970	protein_coding	Gigyf2	intron	ENSMUSG00000048000	NonProperStrand	4	1	-18.9490
chr1	165999276	165999333	protein_coding	Sell	intron	ENSMUSG00000026581	NonProperStrand	23	chr17	36231268	36231310	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	1	-15.3092
chr9	44151432	44151532	protein_coding	Hmbs	intron	ENSMUSG00000032126	ProperStrand	11	chr3	135495715	135495805	protein_coding	Slc39a8	intron	ENSMUSG00000053897	ProperStrand	45	1	-16.0851
chr2	25546182	25546299	SINE	B1_Mus1	Alu	chr2B1_Mus125546196	NonProperStrand	1	chr16	32632691	32632719	protein_coding	Tfrc	utr3	ENSMUSG00000022797	ProperStrand	40	1	-inf
chr15	36599428	36600658	SINE	B1_Mus1	Alu	chr15B1_Mus136600585	ProperStrand	16	chr17	39843441	39843484	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-5.0382
chr1	6221429	6221529	protein_coding	Rb1cc1	intron	ENSMUSG00000025907	ProperStrand	13	chr8	13182391	13182481	protein_coding	Grtp1	intron	ENSMUSG00000038515	NonProperStrand	13	1	-18.4140
chr7	12926491	12926658	LINE	L1Md_F	L1	chr7L1Md_F12926473	ProperStrand	6	chr7	12922385	12923069	LINE	L1Md_T	L1	chr7L1Md_T12921579	ProperStrand	21	1	-19.2239
chr17	39847752	39847794	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	30342714	30342766	SINE	B4A	B4	chr2B4A30342697	NonProperStrand	2	1	-5.4040
chr10	116668095	116668185	LTR	RLTR21	ERVK	chr10RLTR21116667547	NonProperStrand	1	chr10	116614771	116614871	SINE	B1_Mur3	Alu	chr10B1_Mur3116614782	ProperStrand	1	1	-inf
chr18	55471130	55471230	LTR	IAPEz-int	ERVK	chr18IAPEz-int55471107	NonProperStrand	1	chr18	55470902	55470992	LTR	IAPLTR1a_Mm	ERVK	chr18IAPLTR1a_Mm55470770	NonProperStrand	1	1	-inf
chr7	67605362	67605399	LINE	L1Md_T	L1	chr7L1Md_T67604562	NonProperStrand	3	chr17	39846954	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr2	18342998	18343098	LINE	L1_Mur3	L1	chr2L1_Mur318342979	ProperStrand	1	chr2	17609461	17609551	protein_coding	Nebl	intron	ENSMUSG00000053702	NonProperStrand	5	1	-inf
chr10	70165241	70165341	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n70165210	ProperStrand	1	chr10	70165136	70165226	Simple_repeat	(TCTG)n	Simple_repeat	chr10(TCTG)n70165086	ProperStrand	1	1	-inf
chr17	39847277	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	57236557	57236601	protein_coding	Gm11110	intron	ENSMUSG00000079414	ProperStrand	5	1	-4.3348
chr19	15909384	15914915	LTR	IAPEz-int	ERVK	chr19IAPEz-int15914290	NonProperStrand	21	chr16	48289342	48291034	protein_coding	Dppa4	intron	ENSMUSG00000058550	ProperStrand	20	1	-16.3759
chr4	135920927	135921002	SINE	B2_Mm1t	B2	chr4B2_Mm1t135920832	ProperStrand	1	chr9	123461865	123461904	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	66535505	66535586	LINE	L1Md_F3	L1	chr6L1Md_F366534975	ProperStrand	3	chr17	39846485	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39847674	39847721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	64407414	64407446	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int64406033	ProperStrand	1	1	-inf
chr5	146261022	146261098	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	72979885	72979913	protein_coding	Ola1	intron	ENSMUSG00000027108	NonProperStrand	9	1	-8.8915
chr12	78226837	78226880	LTR	MLT1B	MaLR	chr12MLT1B78226543	ProperStrand	2	chr12	78227585	78227666	SINE	B1F1	Alu	chr12B1F178227595	ProperStrand	1	1	-inf
chr13	22400960	22401050	LTR	MuRRS4-int	ERV1	chr13MuRRS4-int22400962	ProperStrand	1	chr13	22401296	22401396	LTR	RMER16-int	ERVK	chr13RMER16-int22401115	ProperStrand	1	1	-inf
chr12	111629060	111633651	LINE	L1MC4a	L1	chr12L1MC4a111629055	ProperStrand	1	chr12	111633734	111633834	Simple_repeat	(GGGAA)n	Simple_repeat	chr12(GGGAA)n111633729	ProperStrand	1	1	-inf
chr13	102847975	102848068	LINE	L1MC3	L1	chr13L1MC3102847945	NonProperStrand	2	chr12	111545246	111545270	LTR	RLTR10-int	ERVK	chr12RLTR10-int111544003	ProperStrand	3	1	-20.8297
chr10	127065186	127065974	LINE	L2c	L2	chr10L2c127065156	NonProperStrand	3	chr10	127064940	127065182	Low_complexity	CT-rich	Low_complexity	chr10CT-rich127064837	ProperStrand	4	2	-inf
chr5	118743257	118743278	SINE	PB1D10	Alu	chr5PB1D10118743230	ProperStrand	4	chr5	118743448	118743479	Simple_repeat	(GAAAA)n	Simple_repeat	chr5(GAAAA)n118743428	ProperStrand	1	1	-inf
chr3	19280038	19280134	LINE	L1Md_F	L1	chr3L1Md_F19278107	NonProperStrand	9	chr15	80082858	80082908	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	1	-11.9691
chr1	165865313	165865429	protein_coding	Scyl3	intron	ENSMUSG00000026584	NonProperStrand	38	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.8210
chr17	16570401	16570491	LINE	Lx6	L1	chr17Lx616570102	NonProperStrand	1	chr17	16569952	16570052	LTR	MT2A	ERVL	chr17MT2A16569796	ProperStrand	1	1	-inf
chr8	84699695	84699713	LINE	Lx2	L1	chr8Lx284698625	NonProperStrand	21	chr17	39845857	39845921	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-3.8494
chr17	39847179	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	22542176	22542223	protein_coding	Dgkg	intron	ENSMUSG00000022861	NonProperStrand	3	1	-5.4882
chr1	36071511	36071687	LTR	ORR1B1-int	MaLR	chr1ORR1B1-int36070963	ProperStrand	11	chr1	36071648	36071806	LTR	ORR1B1	MaLR	chr1ORR1B136071662	ProperStrand	12	8	-inf
chr12	78887976	78888032	LTR	RMER17B	ERVK	chr12RMER17B78887913	ProperStrand	2	chr12	78886189	78886272	Simple_repeat	(CATATA)n	Simple_repeat	chr12(CATATA)n78885817	ProperStrand	2	2	-inf
chr11	75494251	75503641	protein_coding	Crk	intron	ENSMUSG00000017776	ProperStrand	72	chr9	123462053	123462104	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-3.2878
chr11	103014135	103014236	SINE	B1_Mus1	Alu	chr11B1_Mus1103014119	ProperStrand	1	chr13	97190579	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr11	20012087	20012124	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	chr12	105456425	105456540	protein_coding	Serpina3f	exon	ENSMUSG00000066363	ProperStrand	16	1	-12.4284
chr8	95452383	95452472	LTR	ERVL-B4-int	ERVL	chr8ERVL-B4-int95452371	ProperStrand	4	chr8	95452285	95452386	SINE	B3	B2	chr8B395452178	ProperStrand	5	4	-inf
chr5	146261303	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	97279094	97279112	protein_coding	E130114P18Rik	intron	ENSMUSG00000048747	NonProperStrand	12	1	-11.1518
chr17	39846804	39846863	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	110410545	110410642	LTR	RLTR9E	ERVK	chr5RLTR9E110410453	NonProperStrand	1	1	-inf
chr2	31065471	31065551	protein_coding-noncoding	Gpr107	utr5	ENSMUSG00000000194	ProperStrand	1	chr2	31065597	31065620	protein_coding	Gpr107	intron	ENSMUSG00000000194	ProperStrand	11	1	-inf
chr9	101499296	101499396	LINE	Lx8	L1	chr9Lx8101499168	ProperStrand	1	chr9	101499537	101499627	LTR	RLTR12B	ERVK	chr9RLTR12B101499491	NonProperStrand	1	1	-inf
chr17	39847147	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	22547638	22547687	LTR	RMER3D-int	ERVK	chr8RMER3D-int22547615	ProperStrand	1	1	-inf
chr6	37972101	37972191	protein_coding	Svopl	intron	ENSMUSG00000029830	NonProperStrand	43	chr6	37914830	37914930	protein_coding	Trim24	intron	ENSMUSG00000029833	NonProperStrand	8	1	-16.8471
chr6	29770548	29853600	protein_coding-noncoding	Ahcyl2	utr5	ENSMUSG00000029772	ProperStrand	7	chr6	29770769	29818830	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	ProperStrand	78	4	-inf
chr9	45702264	45702364	protein_coding	Rnf214	intron	ENSMUSG00000042790	NonProperStrand	2	chr9	45021560	45021650	protein_coding	BC049352	intron	ENSMUSG00000091996	NonProperStrand	3	1	-20.8297
chr11	68194462	68194594	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	chr5	127784931	127789726	protein_coding	Tmem132c	intron	ENSMUSG00000034324	NonProperStrand	18	2	-18.4358
chr12	98727863	98727961	LINE	Lx7	L1	chr12Lx798727622	ProperStrand	2	chr11	88527823	88527850	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-13.7007
chr4	141302999	141303044	protein_coding	Agmat	intron	ENSMUSG00000040706	ProperStrand	58	chr8	61232814	61232924	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-9.6965
chr10	4367742	4367842	SINE	B3	B2	chr10B34367687	NonProperStrand	1	chr9	65196581	65196671	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-inf
chr9	123462127	123462149	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr18	51289855	51289874	protein_coding	Prr16	intron	ENSMUSG00000073565	NonProperStrand	13	1	-16.7700
chr12	17916167	17916235	LINE	L1MC1	L1	chr12L1MC117916078	ProperStrand	1	chr12	17910842	17910918	LINE	L1_Mus1	L1	chr12L1_Mus117910553	ProperStrand	1	1	-inf
chrX	100565160	100565260	protein_coding	Chic1	intron	ENSMUSG00000031327	ProperStrand	2	chr14	33967696	33967786	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-19.1893
chr1	74698636	74698670	LTR	RMER6A	ERVK	chr1RMER6A74698511	NonProperStrand	1	chr1	74698163	74698249	SINE	ID_B1	B4	chr1ID_B174698105	NonProperStrand	3	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr6	47798518	47798543	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	1	-7.3290
chr3	11206751	11206851	LINE	L1Md_F2	L1	chr3L1Md_F211206017	NonProperStrand	1	chr3	11207001	11207091	LTR	ORR1A2-int	MaLR	chr3ORR1A2-int11207012	ProperStrand	1	1	-inf
chr19	26156550	26156640	LINE	L1Md_A	L1	chr19L1Md_A26153487	NonProperStrand	1	chr7	47186402	47186502	SINE	PB1D10	Alu	chr7PB1D1047186421	NonProperStrand	4	1	-inf
chr3	61363759	61363805	LTR	RLTR20B3	ERVK	chr3RLTR20B361363594	NonProperStrand	1	chr5	21054906	21055013	protein_coding	Fbxl13	intron	ENSMUSG00000048520	ProperStrand	33	1	-inf
chr1	97398043	97398143	LTR	ETnERV2-int	ERVK	chr1ETnERV2-int97397727	ProperStrand	1	chr1	97398430	97398520	LTR	RLTRETN_Mm	ERVK	chr1RLTRETN_Mm97398289	NonProperStrand	1	1	-inf
chr17	39847177	39847293	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	73854172	73858718	protein_coding	Lins	intron	ENSMUSG00000053091	ProperStrand	3	2	-9.8423
chr17	39843218	39848192	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	123461791	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1688	-inf
chr3	137580056	137580156	LINE	L2c	L2	chr3L2c137580072	ProperStrand	1	chr3	137580414	137580504	LINE	Lx8	L1	chr3Lx8137580240	NonProperStrand	1	1	-inf
chr6	131871751	131871851	LINE	L1_Mur2	L1	chr6L1_Mur2131871755	NonProperStrand	1	chr6	131871548	131871638	LTR	RMER13A	ERVK	chr6RMER13A131871368	NonProperStrand	1	1	-inf
chr17	39847271	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	136872401	136872478	LTR	RLTR11A	ERVK	chr1RLTR11A136872069	NonProperStrand	1	1	-inf
chr9	21918029	21918124	protein_coding	Elof1	exon	ENSMUSG00000013822	ProperStrand	4	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-14.3048
chr17	39847277	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	38513476	38513519	SINE	ID_B1	B4	chr2ID_B138513358	NonProperStrand	1	1	-inf
chr17	39846616	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	8689005	8689022	protein_coding	Usp7	utr3	ENSMUSG00000022710	NonProperStrand	2	1	-5.3533
chr4	51563948	51564048	LINE	L1_Mur2	L1	chr4L1_Mur251562966	ProperStrand	1	chr4	51122711	51122801	LTR	MTC	MaLR	chr4MTC51122723	NonProperStrand	1	1	-inf
chr2	170181941	170182041	antisense	1700040N02Rik	.	ENSMUSG00000086999	ProperStrand	3	chr2	170181797	170181887	protein_coding	Bcas1	intron	ENSMUSG00000013523	NonProperStrand	3	1	-20.2168
chr7	126797484	126797647	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	chr14	122282586	122282630	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-7.4405
chrX	12801863	12801886	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr11	69588679	69589155	protein_coding	Zbtb4	intron	ENSMUSG00000018750	ProperStrand	30	1	-13.7131
chr17	39847552	39848052	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	mmu-miR-1912-5p	1	19	miRNA	mmu-miR-1912-5p	.	mmu-miR-1912-5p	NonProperStrand	5	2	-5.9065
chr1	12371350	12371440	LTR	ORR1B1-int	MaLR	chr1ORR1B1-int12371068	ProperStrand	1	chr1	12371698	12371798	LTR	RLTR25B	ERVK	chr1RLTR25B12371535	ProperStrand	1	1	-inf
chr11	78232524	78232692	protein_coding	Slc13a2	intron	ENSMUSG00000001095	ProperStrand	33	chr11	74898414	74899200	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-11.3119
chr17	46245147	46245698	LINE	L1ME3A	L1	chr17L1ME3A46245166	NonProperStrand	1	chr17	46245078	46245147	SINE	B3	B2	chr17B346244921	NonProperStrand	1	1	-inf
chrX	74239771	74240000	LINE	Lx2	L1	chrXLx274239704	NonProperStrand	7	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-13.0505
chr14	89373989	89374079	LTR	MTC-int	MaLR	chr14MTC-int89373884	ProperStrand	1	chr14	89373763	89373863	LTR	MTC	MaLR	chr14MTC89373475	ProperStrand	1	1	-inf
chr17	39847728	39847760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	70436564	70436656	antisense	Gm12315	.	ENSMUSG00000085952	NonProperStrand	1	1	-inf
chr17	39845847	39846209	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	167063192	167063556	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	3	-4.4541
chr11	96047198	96047253	SINE	ID4	ID	chr11ID496047172	ProperStrand	1	chr4	45035209	45035289	protein_coding	Polr1e	intron	ENSMUSG00000028318	ProperStrand	5	1	-inf
chr7	125262511	125262601	protein_coding	Arl6ip1	utr3	ENSMUSG00000030654	ProperStrand	1	chr7	125334445	125334545	protein_coding	Smg1	intron	ENSMUSG00000030655	NonProperStrand	1	1	-inf
chr17	26688038	26688131	LINE	L1MC4	L1	chr17L1MC426687925	NonProperStrand	1	chr17	39847992	39848028	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	116688913	116689003	LINE	L1Md_F2	L1	chr1L1Md_F2116688725	NonProperStrand	1	chr1	116688549	116688649	LINE	L1Md_T	L1	chr1L1Md_T116688236	NonProperStrand	1	1	-inf
chr12	108824939	108825014	LTR	MTE2a	MaLR	chr12MTE2a108824862	ProperStrand	1	chr17	39847912	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	1	-inf
chr3	37324222	37324304	protein_coding-noncoding	Spata5	utr5	ENSMUSG00000027722	ProperStrand	1	chr3	37324329	37324376	protein_coding	Spata5	intron	ENSMUSG00000027722	ProperStrand	28	1	-inf
chr17	39846807	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	46502479	46502581	protein_coding	Nans	intron	ENSMUSG00000028334	ProperStrand	2	2	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr11	69600547	69600567	protein_coding	Chrnb1	exon	ENSMUSG00000041189	ProperStrand	8	1	-14.7398
chr6	122313398	122315060	LTR	RLTR31A_Mm	ERVK	chr6RLTR31A_Mm122312850	NonProperStrand	1	chr6	122315424	122316080	LTR	RMER17C	ERVK	chr6RMER17C122315788	ProperStrand	3	1	-inf
chr4	136050362	136051232	protein_coding	Luzp1	intron	ENSMUSG00000001089	NonProperStrand	42	chr18	15833251	15833351	protein_coding	Chst9	intron	ENSMUSG00000047161	NonProperStrand	8	1	-16.9044
chr16	32223234	32223323	SINE	B3A	B2	chr16B3A32223226	NonProperStrand	1	chr8	11765808	11765874	protein_coding	Arhgef7	intron	ENSMUSG00000031511	ProperStrand	147	1	-inf
chr3	87542265	87542365	protein_coding	4933430H15Rik	utr3	ENSMUSG00000023084	NonProperStrand	2	chr3	87540414	87542261	protein_coding	Arhgef11	intron	ENSMUSG00000041977	ProperStrand	12	2	-inf
chr7	37393614	37393714	LINE	Lx6	L1	chr7Lx637393633	ProperStrand	1	chr7	37393033	37393123	LTR	MTD	MaLR	chr7MTD37393056	ProperStrand	1	1	-inf
chr1	151912514	151912534	SINE	B1_Mus1	Alu	chr1B1_Mus1151912492	ProperStrand	4	chr13	24223005	24223123	protein_coding	Lrrc16a	intron	ENSMUSG00000021338	ProperStrand	112	1	-16.4709
chr17	12983602	12983662	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	chr14	56486590	56486640	protein_coding	Nynrin	intron	ENSMUSG00000075592	ProperStrand	13	4	-inf
chr5	24155249	24155339	LTR	MTD	MaLR	chr5MTD24155122	ProperStrand	6	chr5	24155341	24155441	SINE	B1_Mus1	Alu	chr5B1_Mus124155334	ProperStrand	6	6	-inf
chr17	39846701	39846791	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	83316492	83316592	protein_coding	Ttll1	intron	ENSMUSG00000022442	NonProperStrand	1	1	-inf
chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	chr2	31201933	31202044	protein_coding	Hmcn2	intron	ENSMUSG00000055632	ProperStrand	328	1	-8.5561
chr6	73483918	73484018	SINE	MIR	MIR	chr6MIR73483897	ProperStrand	1	chr13	20426189	20426279	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	211	1	-inf
chr14	75847918	75847957	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr19	3479211	3479318	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	2	-17.0815
chr13	104191832	104191922	LINE	L1Md_A	L1	chr13L1Md_A104190823	ProperStrand	3	chr3	116006877	116006916	protein_coding	Cdc14a	intron	ENSMUSG00000033502	ProperStrand	22	1	-21.7474
chr7	29173078	29173177	protein_coding	Med29	intron	ENSMUSG00000003444	ProperStrand	8	chr12	109589979	109590041	protein_coding	Cyp46a1	intron	ENSMUSG00000021259	ProperStrand	108	1	-14.9833
chr17	39847734	39847768	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	66504277	66504359	Low_complexity	CT-rich	Low_complexity	chr17CT-rich66504176	NonProperStrand	1	1	-inf
chr17	39848244	39848311	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr5	8410705	8410762	protein_coding	Dbf4	intron	ENSMUSG00000002297	ProperStrand	25	2	-5.1643
chr17	24600544	24600612	LTR	BGLII_A	ERVK	chr17BGLII_A24600374	ProperStrand	11	chr9	123461957	123462035	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chrX	73689671	73707027	LINE	Lx7	L1	chrXLx773706283	NonProperStrand	3	chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	chr4	24648056	24648176	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	104	1	-11.0206
chrX	43113064	43113154	LINE	Lx8	L1	chrXLx843113058	NonProperStrand	1	chrX	43112954	43113054	LTR	ORR1D1	MaLR	chrXORR1D143112712	ProperStrand	1	1	-inf
chr11	109011722	109011743	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr16	18508786	18508914	protein_coding	Gnb1l	intron	ENSMUSG00000000884	ProperStrand	89	1	-5.3276
chr2	22744864	22744925	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	15	1	-9.6092
chr13	62604803	62604914	SINE	B1_Mus2	Alu	chr13B1_Mus262604810	ProperStrand	1	chr14	61397356	61397381	antisense	Gm15919	.	ENSMUSG00000084951	ProperStrand	2	1	-inf
chr12	100925729	100925819	DNA	URR1A	MER1_type	chr12URR1A100925724	ProperStrand	1	chr9	59274237	59274337	protein_coding	Arih1	intron	ENSMUSG00000025234	NonProperStrand	60	1	-inf
chrX	4899373	4899395	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	18	chr11	82764107	82764215	antisense	1700003F17Rik	.	ENSMUSG00000086327	ProperStrand	6	1	-19.4462
chr6	134961907	134962229	protein_coding	Ddx47	intron	ENSMUSG00000030204	ProperStrand	3	chr13	44869576	44869716	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-17.6499
chr1	105991687	105991787	LINE	L1Md_F2	L1	chr1L1Md_F2105991647	NonProperStrand	2	chr1	105991576	105991666	LINE	L1_Mur1	L1	chr1L1_Mur1105989797	ProperStrand	6	2	-inf
chr12	11091994	11092011	LINE	Lx8	L1	chr12Lx811091971	ProperStrand	5	chr12	69158663	69158704	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	1	-18.3156
chr17	39847162	39847212	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	67754143	67754183	protein_coding	Vps13c	intron	ENSMUSG00000035284	ProperStrand	3	1	-5.4882
chr15	102122508	102122598	LTR	MTB_Mm	MaLR	chr15MTB_Mm102122266	ProperStrand	1	chr9	37317289	37317389	protein_coding	BC024479	intron	ENSMUSG00000042138	NonProperStrand	16	1	-inf
chr11	77989750	77989850	protein_coding	Nek8	intron	ENSMUSG00000017405	ProperStrand	2	chr11	77990232	77990322	protein_coding	Tlcd1	utr5	ENSMUSG00000019437	NonProperStrand	1	1	-inf
chr4	91275416	91275506	LINE	L1Md_F3	L1	chr4L1Md_F391270892	ProperStrand	1	chr4	115771032	115771132	protein_coding	Rad54l	intron	ENSMUSG00000028702	ProperStrand	2	1	-inf
chr11	29402213	29402289	protein_coding	Ccdc88a	intron	ENSMUSG00000032740	ProperStrand	17	chr18	84981250	84981316	protein_coding	Gm17266	intron	ENSMUSG00000092153	NonProperStrand	19	1	-16.8543
chr10	40258543	40258563	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr9	44742788	44742818	protein_coding	Ube4a	intron	ENSMUSG00000059890	ProperStrand	16	1	-7.9987
chr12	20775049	20775139	SINE	B2_Mm1a	B2	chr12B2_Mm1a20775001	ProperStrand	1	chr12	20774905	20775005	Unknown	MurSatRep1	Unknown	chr12MurSatRep120774160	NonProperStrand	1	1	-inf
chr4	133416353	133416439	protein_coding	Rps6ka1	intron	ENSMUSG00000003644	NonProperStrand	25	chr3	35978927	35978998	protein_coding	Acad9	intron	ENSMUSG00000027710	NonProperStrand	35	1	-14.8845
chr3	33523451	33523551	LINE	L1Md_A	L1	chr3L1Md_A33517890	NonProperStrand	1	chr3	31984774	31984863	protein_coding	Kcnmb2	intron	ENSMUSG00000037610	ProperStrand	7	1	-inf
chr9	123461847	123461882	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	92227200	92227316	protein_coding	Mapk8ip1	exon	ENSMUSG00000027223	NonProperStrand	15	1	-3.5950
chr7	5409489	5409579	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	chr14	56249240	56249340	protein_coding	Ipo4	intron	ENSMUSG00000002319	NonProperStrand	1	1	-inf
chr13	40903911	40904043	LTR	RLTR47_MM	ERV1	chr13RLTR47_MM40903935	ProperStrand	6	chr13	40903824	40903939	SINE	B1_Mus2	Alu	chr13B1_Mus240903778	ProperStrand	6	6	-inf
chr11	100457881	100457936	protein_coding-noncoding	Dnajc7	utr3	ENSMUSG00000014195	ProperStrand	1	chr2	5379292	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr13	6458397	6458487	LINE	L1Md_F3	L1	chr13L1Md_F36457407	ProperStrand	1	chr19	11481601	11481701	protein_coding	Ms4a4c	intron	ENSMUSG00000024675	ProperStrand	2	1	-inf
chrX	151886580	151886683	LINE	L1_Rod	L1	chrXL1_Rod151885780	NonProperStrand	1	chr10	18324816	18324845	protein_coding	D10Bwg1379e	intron	ENSMUSG00000019852	NonProperStrand	72	1	-inf
chr9	123461871	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	99495180	99508264	protein_coding	Fcho2	intron	ENSMUSG00000041685	ProperStrand	31	2	-4.1009
chr1	48723765	48723855	LTR	ORR1A3	MaLR	chr1ORR1A348723705	ProperStrand	1	chr1	48723418	48723518	LTR	RLTR9E	ERVK	chr1RLTR9E48723341	ProperStrand	1	1	-inf
chr9	17987812	17987838	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	chr10	12940133	12940149	protein_coding	Phactr2	intron	ENSMUSG00000062866	ProperStrand	10	1	-14.8131
chr15	76396420	76396444	LTR	RLTR4_MM-int	ERV1	chr15RLTR4_MM-int76394441	NonProperStrand	4	chr15	76399407	76399543	LTR	RMER6A	ERVK	chr15RMER6A76399113	ProperStrand	1	1	-inf
chr11	106066808	106066838	protein_coding-noncoding	Ccdc47	utr3	ENSMUSG00000078622	NonProperStrand	17	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	29	1	-16.0388
chrX	75715743	75715879	protein_coding-noncoding	Prrg1	utr3	ENSMUSG00000047996	ProperStrand	1	chrX	75725578	75725597	protein_coding	Prrg1	intron	ENSMUSG00000047996	ProperStrand	19	1	-inf
chr17	39848477	39848551	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr6	13070081	13070124	LINE	L1MC2	L1	chr6L1MC213069804	ProperStrand	1	1	-inf
chr10	78302354	78302454	LINE	L1VL2	L1	chr10L1VL278300195	ProperStrand	1	chr6	121324402	121324492	protein_coding	Iqsec3	utr3	ENSMUSG00000040797	NonProperStrand	5	1	-inf
chr4	132658831	132658931	SINE	B1_Mur1	Alu	chr4B1_Mur1132658859	NonProperStrand	1	chr4	132658744	132658834	SINE	B3A	B2	chr4B3A132658663	NonProperStrand	1	1	-inf
chr13	107830396	107830490	LTR	MLT1F	MaLR	chr13MLT1F107830418	ProperStrand	1	chr9	123461977	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	135039044	135039127	protein_coding	Vkorc1	utr5	ENSMUSG00000030804	NonProperStrand	22	chr6	32968110	32968179	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-11.6002
chr2	53094761	53094793	LINE	Lx5	L1	chr2Lx553094380	ProperStrand	1	chr2	53095979	53096043	LTR	RLTR33	ERVK	chr2RLTR3353095959	NonProperStrand	2	1	-inf
chr9	19657968	19658058	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr10	42381678	42381777	protein_coding	Ostm1	intron	ENSMUSG00000038280	ProperStrand	5	1	-15.9351
chrX	145447271	145447347	LINE	L1Md_F2	L1	chrXL1Md_F2145446051	NonProperStrand	1	chr11	78231830	78231855	protein_coding	Slc13a2	intron	ENSMUSG00000001095	ProperStrand	33	1	-inf
chr13	38356337	38356421	LINE	Lx5	L1	chr13Lx538356271	NonProperStrand	1	chr17	39847762	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	4082258	4082358	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr6	102041171	102041261	LINE	Lx3C	L1	chr6Lx3C102040530	ProperStrand	7	6	-inf
chr1	119835810	119835864	LINE	MusHAL1	L1	chr1MusHAL1119835769	ProperStrand	1	chr17	27763604	27763664	LTR	RLTR25B	ERVK	chr17RLTR25B27763586	NonProperStrand	1	1	-inf
chr16	48589257	48589333	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	chr1	130159584	130159600	protein_coding	Ubxn4	intron	ENSMUSG00000026353	ProperStrand	3	1	-inf
chr9	58582503	58623739	LINE	L1ME3A	L1	chr9L1ME3A58619998	NonProperStrand	1	chr9	58582428	58582490	protein_coding	2410076I21Rik	intron	ENSMUSG00000074269	NonProperStrand	13	1	-inf
chrX	155560654	155560744	DNA	Zaphod	Tip100	chrXZaphod155560612	NonProperStrand	1	chrX	155560230	155560330	LTR	IAPLTR2a	ERVK	chrXIAPLTR2a155560058	NonProperStrand	1	1	-inf
chr4	115738425	115738485	SINE	B1_Mur1	Alu	chr4B1_Mur1115738355	ProperStrand	1	chr5	110792913	110792956	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	ProperStrand	131	1	-inf
chr1	74262513	74263760	LTR	MLT1E1A	MaLR	chr1MLT1E1A74262517	ProperStrand	1	chr17	70963684	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr2	25264140	25264240	protein_coding-noncoding	Npdc1	utr5	ENSMUSG00000015094	ProperStrand	1	chr2	25264028	25264118	protein_coding	Npdc1	intron	ENSMUSG00000015094	ProperStrand	6	1	-inf
chr12	46818725	46818800	LINE	L1_Mur2	L1	chr12L1_Mur246818025	NonProperStrand	1	chr17	70963742	70963820	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr17	39843029	39843070	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr7	116207065	116207152	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-4.2732
chr6	83311291	83311318	LINE	Lx7	L1	chr6Lx783311043	ProperStrand	4	chr17	86788096	86788134	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	1	-15.8782
chr6	94261999	94262099	SINE	RSINE1	B4	chr6RSINE194261982	ProperStrand	2	chr6	94262125	94262215	Simple_repeat	(TTTC)n	Simple_repeat	chr6(TTTC)n94262105	NonProperStrand	1	1	-inf
chr10	100536207	100536297	LTR	ERVL-int	ERVL	chr10ERVL-int100536128	ProperStrand	1	chr10	100536363	100536463	LTR	ERVL-int	ERVL	chr10ERVL-int100536292	ProperStrand	1	1	-inf
chr12	75477781	75477868	LINE	Lx	L1	chr12Lx75477262	ProperStrand	6	chr11	33395774	33395828	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-12.1927
chr2	156089806	156089921	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	96	chr13	97190561	97190591	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.2211
chr2	59140654	59140744	protein_coding	Pkp4	intron	ENSMUSG00000026991	NonProperStrand	2	chr2	59671322	59671422	protein_coding	Tanc1	intron	ENSMUSG00000035168	NonProperStrand	17	1	-20.8675
chr4	136145143	136145174	protein_coding	Kdm1a	intron	ENSMUSG00000036940	NonProperStrand	9	chr17	56703268	56703310	protein_coding	Safb2	intron	ENSMUSG00000042625	NonProperStrand	49	1	-16.3485
chr6	124934672	124934730	SINE	B4A	B4	chr6B4A124934627	NonProperStrand	2	chr11	102913038	102913455	protein_coding	Nmt1	intron	ENSMUSG00000020936	NonProperStrand	24	1	-20.2563
chr3	96197433	96197487	LTR	MTEa	MaLR	chr3MTEa96197401	ProperStrand	3	chr13	44869628	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr11	98028401	98029438	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	chr10	62769632	62769660	protein_coding	Herc4	intron	ENSMUSG00000020064	NonProperStrand	20	1	-12.9095
chr12	81222314	81222391	lincRNA	2310015A10Rik	exon	ENSMUSG00000085644	ProperStrand	2	chr13	67420440	67420513	protein_coding	Zfp595	intron	ENSMUSG00000057842	ProperStrand	9	1	-inf
chr17	39847976	39848009	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	47106058	47106081	SINE	B1_Mur1	Alu	chr19B1_Mur147105947	ProperStrand	1	1	-inf
chr2	143063117	143063225	LTR	RLTR23	ERV1	chr2RLTR23143063003	ProperStrand	1	chr9	123462125	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	78350923	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr18	88893129	88893205	protein_coding	Socs6	intron	ENSMUSG00000056153	ProperStrand	33	1	-7.0828
chr16	19040254	19040354	LTR	ETnERV2-int	ERVK	chr16ETnERV2-int19039647	ProperStrand	3	chr16	19036050	19036140	LTR	RLTR9D	ERVK	chr16RLTR9D19035729	ProperStrand	2	2	-inf
chr10	120804303	120804359	protein_coding	Gns	intron	ENSMUSG00000034707	NonProperStrand	3	chr10	81122132	81122220	protein_coding	Gm10778	intron	ENSMUSG00000074860	ProperStrand	46	1	-18.9645
chr17	34541415	34541515	protein_coding	BC051142	intron	ENSMUSG00000057246	NonProperStrand	20	chr17	34473133	34474036	protein_coding	H2-Eb2	intron	ENSMUSG00000067341	NonProperStrand	2	2	-inf
chr9	3225123	3225223	LINE	L1_Mus1	L1	chr9L1_Mus13224502	ProperStrand	1	chr12	56444365	56444455	protein_coding	1110008L16Rik	intron	ENSMUSG00000021023	NonProperStrand	3	1	-inf
chr17	39847958	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	69784701	69784807	antisense	1700092C10Rik	.	ENSMUSG00000092499	NonProperStrand	3	1	-4.3512
chr14	66999641	66999668	DNA	URR1A	MER1_type	chr14URR1A66999608	ProperStrand	1	chr1	128006577	128006614	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-inf
chrX	21680550	21680580	LINE	Lx9	L1	chrXLx921680470	ProperStrand	4	chr5	77269737	77269777	protein_coding	C530008M17Rik	exon	ENSMUSG00000036377	ProperStrand	184	1	-15.4517
chr10	24817920	24820612	LINE	L1M4c	L1	chr10L1M4c24817897	NonProperStrand	1	chr17	39846050	39846093	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr13	112481557	112481657	protein_coding-noncoding	Mier3	utr5	ENSMUSG00000032727	ProperStrand	2	chr13	112480273	112481496	protein_coding	Mier3	utr5	ENSMUSG00000032727	ProperStrand	63	2	-inf
chr1	63177911	63177943	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	chr5	114851974	114852001	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-8.8560
chr13	11978016	11978106	protein_coding	Ryr2	intron	ENSMUSG00000021313	ProperStrand	81	chr11	104577392	104577492	protein_coding	Gm11639	intron	ENSMUSG00000040838	NonProperStrand	2	1	-18.7300
chr4	141169510	141169566	protein_coding-noncoding	Tmem82	utr3	ENSMUSG00000043085	NonProperStrand	2	chr8	71663498	71663532	protein_coding	Lzts1	intron	ENSMUSG00000036306	ProperStrand	27	1	-21.9988
chr5	137528770	137528860	SINE	B4A	B4	chr5B4A137528764	ProperStrand	6	chr5	137528566	137528747	SINE	PB1D9	Alu	chr5PB1D9137528673	ProperStrand	9	6	-inf
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr13	89884365	89884472	lincRNA	Gm4117	intron	ENSMUSG00000089940	NonProperStrand	11	1	-14.8416
chr10	95541768	95542307	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n95542238	ProperStrand	2	chr17	39843657	39843690	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr17	56444321	56444424	protein_coding	Uhrf1	intron	ENSMUSG00000001228	NonProperStrand	39	chr1	72635451	72635467	protein_coding	Smarcal1	intron	ENSMUSG00000039354	ProperStrand	4	1	-18.7666
chr6	39325490	39325534	protein_coding	Slc37a3	intron	ENSMUSG00000029924	ProperStrand	41	chrX	8073950	8074001	protein_coding	Ssxb6	intron	ENSMUSG00000079702	NonProperStrand	21	1	-14.9205
chr17	33691698	33691777	SINE	B3A	B2	chr17B3A33691702	NonProperStrand	1	chr4	94574041	94574066	protein_coding	4930579C15Rik	utr3	ENSMUSG00000028575	ProperStrand	21	1	-inf
chr10	39445372	39445396	lincRNA	E130307A14Rik	intron	ENSMUSG00000087177	ProperStrand	5	chr7	30198181	30198291	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	ProperStrand	147	1	-15.3924
chr17	39847222	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	37336513	37336572	SINE	B2_Mm2	B2	chr19B2_Mm237336499	ProperStrand	4	1	-4.8204
chr17	11721206	11721234	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr7	109519595	109519973	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-7.5708
chr7	5409564	5409654	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	chr5	19331660	19331760	protein_coding	Magi2	intron	ENSMUSG00000040003	ProperStrand	33	1	-16.2011
chr18	10052131	10052154	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	5	chr15	57975972	57975990	protein_coding	Wdyhv1	intron	ENSMUSG00000022359	NonProperStrand	10	1	-22.6756
chr2	87849952	87850052	LINE	Lx2	L1	chr2Lx287849654	NonProperStrand	1	chr2	87850366	87850456	LINE	Lx6	L1	chr2Lx687850185	ProperStrand	1	1	-inf
chr13	95527562	95527652	LINE	L1MC	L1	chr13L1MC95527371	NonProperStrand	1	chr13	95528027	95528127	SINE	B4A	B4	chr13B4A95527986	NonProperStrand	1	1	-inf
chr18	74535372	74535472	LTR	LTRIS3	ERV1	chr18LTRIS374535290	NonProperStrand	1	chr18	74535061	74535151	LTR	MERVK26-int	ERVK	chr18MERVK26-int74534732	ProperStrand	1	1	-inf
chr9	76532875	76532975	LINE	L1_Mus4	L1	chr9L1_Mus476532900	ProperStrand	1	chr9	76532684	76532774	LINE	Lx7	L1	chr9Lx776532707	ProperStrand	1	1	-inf
chr2	58121724	58121825	protein_coding	Acvr1c	utr3	ENSMUSG00000026834	NonProperStrand	2	chr14	33967405	33967495	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-18.1493
chr1	118680596	118680649	LTR	MTC	MaLR	chr1MTC118680473	NonProperStrand	4	chr4	136339877	136339951	protein_coding	Ephb2	intron	ENSMUSG00000028664	NonProperStrand	64	1	-17.6295
chr18	32268922	32268983	LTR	RLTR19-int	ERVK	chr18RLTR19-int32268795	ProperStrand	6	mmu-miR-6238	2	19	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	22	1	-19.1831
chr9	84047932	84048032	LINE	L1M3	L1	chr9L1M384047857	NonProperStrand	1	chr9	84047718	84047808	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n84047636	ProperStrand	1	1	-inf
chr12	113120330	113120430	LINE	L1MB5	L1	chr12L1MB5113120341	ProperStrand	3	chr12	113120227	113120317	SINE	B1_Mus1	Alu	chr12B1_Mus1113120206	ProperStrand	3	3	-inf
chr4	33815046	33815146	LINE	Lx9	L1	chr4Lx933814845	NonProperStrand	1	chr17	22197962	22198052	protein_coding	Zfp943	intron	ENSMUSG00000053347	ProperStrand	7	1	-inf
chr17	39846659	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	127842270	127842320	protein_coding	BC030336	intron	ENSMUSG00000046096	ProperStrand	5	1	-3.1907
chrX	103457603	103457667	LINE	L1M4c	L1	chrXL1M4c103457473	NonProperStrand	5	chr17	39846661	39846757	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr19	5796415	5796523	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr4	123354236	123354254	protein_coding	Macf1	intron	ENSMUSG00000028649	ProperStrand	35	1	-5.4844
chr5	33517379	33517406	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr11	19964758	19964813	protein_coding	Actr2	exon	ENSMUSG00000020152	NonProperStrand	187	1	-6.8828
chr17	39846472	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	117668708	117668779	SINE	B1_Mm	Alu	chr11B1_Mm117668620	NonProperStrand	1	1	-inf
chr9	123461964	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	3448779	3448837	pseudogene	Gm13186	.	ENSMUSG00000081278	ProperStrand	1	1	-inf
chr16	78336766	78336841	protein_coding	Cxadr	utr3	ENSMUSG00000022865	NonProperStrand	14	chr5	24813841	24817815	protein_coding	Mll3	intron	ENSMUSG00000038056	ProperStrand	134	1	-13.3723
chr6	47544539	47544565	protein_coding	Ezh2	intron	ENSMUSG00000029687	ProperStrand	27	chr7	118836884	118837006	protein_coding	Galntl4	intron	ENSMUSG00000038296	ProperStrand	65	1	-13.4796
chr6	56847237	56848262	protein_coding-noncoding	Nt5c3	utr3	ENSMUSG00000029780	ProperStrand	1	chr6	56848357	56848447	protein_coding	Nt5c3	intron	ENSMUSG00000029780	ProperStrand	2	1	-inf
chr4	142199116	142199206	DNA	MER53	hAT	chr4MER53142199089	NonProperStrand	1	chr17	39847559	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	116001875	116001931	protein_coding	Pxn	exon	ENSMUSG00000029528	ProperStrand	36	chr6	128469468	128469539	protein_coding	Pzp	exon	ENSMUSG00000030359	NonProperStrand	26	1	-14.7524
chr6	101973197	101973297	LINE	Lx8	L1	chr6Lx8101973222	ProperStrand	1	chr12	118601931	118602021	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n118601925	ProperStrand	1	1	-inf
chr2	94013628	94013728	SINE	B3A	B2	chr2B3A94013625	ProperStrand	1	chr2	94013842	94013932	SINE	RSINE1	B4	chr2RSINE194013808	ProperStrand	1	1	-inf
chr7	112775585	112775677	protein_coding	Trim3	intron	ENSMUSG00000036989	NonProperStrand	139	chr7	112801681	112801781	protein_coding	Fxc1	intron	ENSMUSG00000089847	ProperStrand	81	4	-20.5624
chr13	24475895	24475985	protein_coding	Cmah	intron	ENSMUSG00000016756	ProperStrand	6	chrX	154363482	154363582	protein_coding	Cnksr2	intron	ENSMUSG00000025658	ProperStrand	6	1	-inf
chr17	39843766	39843824	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr6	117923944	117924001	SINE	B1_Mur1	Alu	chr6B1_Mur1117923930	NonProperStrand	2	1	-10.2298
chr15	102119153	102119253	LTR	RLTR19	ERVK	chr15RLTR19102119059	ProperStrand	1	chr15	102119510	102119600	SINE	B3	B2	chr15B3102119510	ProperStrand	1	1	-inf
chr10	42145409	42145455	protein_coding	Lace1	intron	ENSMUSG00000038302	NonProperStrand	13	chr7	25692451	25694245	protein_coding	Arhgef1	intron	ENSMUSG00000040940	ProperStrand	5	1	-inf
chr6	148860524	148862439	SINE	B2_Mm2	B2	chr6B2_Mm2148860525	ProperStrand	1	chr9	123461805	123461895	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	92860193	92860210	LINE	Lx9	L1	chr7Lx992859721	ProperStrand	5	chr12	54696812	54696946	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-15.5532
chr17	48790158	48790248	LINE	L1MD	L1	chr17L1MD48789986	ProperStrand	1	chr17	48790291	48790391	LINE	L1MD	L1	chr17L1MD48790247	ProperStrand	1	1	-inf
chr12	73224793	73224893	protein_coding	4930403N07Rik	intron	ENSMUSG00000021086	NonProperStrand	31	chr8	87891572	87891662	protein_coding	Mylk3	intron	ENSMUSG00000031698	ProperStrand	57	1	-13.4630
chr10	59788961	59809299	protein_coding	Cdh23	intron	ENSMUSG00000012819	NonProperStrand	234	chr10	59789043	59827255	protein_coding	4632428N05Rik	intron	ENSMUSG00000020101	ProperStrand	17	3	-20.1296
chr2	143607682	143607782	antisense	Gm12360	.	ENSMUSG00000087115	ProperStrand	3	chr2	143484901	143484991	protein_coding	Pcsk2	intron	ENSMUSG00000027419	NonProperStrand	3	1	-20.2168
chr16	18802699	18802789	protein_coding	Cdc45	intron	ENSMUSG00000000028	NonProperStrand	1	chr7	103550719	103550819	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	1	-inf
chr17	39847531	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	127086947	127087081	protein_coding	Stat6	intron	ENSMUSG00000002147	ProperStrand	4	1	-3.7035
chr1	89511462	89511557	DNA	FordPrefect	Tip100	chr1FordPrefect89511413	ProperStrand	2	chr1	89511786	89511820	DNA	FordPrefect	Tip100	chr1FordPrefect89511658	ProperStrand	4	1	-22.1285
chr17	39845361	39845841	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr11	101604953	101605038	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	2	-4.6096
chr13	94277637	94277710	LTR	ORR1A3	MaLR	chr13ORR1A394277638	ProperStrand	1	chr15	7175568	7175643	protein_coding	Egflam	intron	ENSMUSG00000042961	NonProperStrand	61	1	-inf
chr18	35554462	35576253	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr13	44869578	44869711	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-4.0957
chr5	53601960	53602031	protein_coding	Sel1l3	intron	ENSMUSG00000029189	NonProperStrand	144	chr13	97190592	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.4664
chr10	21079100	21079127	protein_coding	Hbs1l	intron	ENSMUSG00000019977	ProperStrand	12	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-9.8312
chr9	123461905	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	33727429	33727468	protein_coding	1700001G17Rik	exon	ENSMUSG00000044744	ProperStrand	2	1	-8.0983
chr17	81547520	81547536	LINE	Lx4B	L1	chr17Lx4B81547342	NonProperStrand	1	chr17	39847539	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	99860165	99860186	LTR	RLTR19-int	ERVK	chr15RLTR19-int99860137	ProperStrand	1	chr4	85231064	85231127	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	1	-inf
chr5	143134499	143134589	protein_coding-noncoding	Wipi2	utr5	ENSMUSG00000029578	ProperStrand	2	chr7	19015935	19016035	protein_coding	Psg28	exon	ENSMUSG00000030373	ProperStrand	1	1	-inf
chr18	76311259	76311298	Simple_repeat	(TAGA)n	Simple_repeat	chr18(TAGA)n76311163	ProperStrand	1	chr9	123461944	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847277	39847310	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	102395318	102395432	protein_coding	Atf7	intron	ENSMUSG00000052414	ProperStrand	6	1	-3.9545
chr2	24801538	24801566	SINE	RSINE1	B4	chr2RSINE124801466	ProperStrand	1	chr9	123461822	123461860	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr4	46492511	46492611	SINE	B1F	Alu	chr4B1F46492480	NonProperStrand	1	chr4	46492746	46492836	SINE	B2_Mm1a	B2	chr4B2_Mm1a46492733	NonProperStrand	1	1	-inf
chr17	39847360	39847408	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	42427754	42427817	SINE	B3	B2	chr10B342427642	NonProperStrand	1	1	-inf
chr19	9722495	9722585	LINE	L1_Mus1	L1	chr19L1_Mus19722498	ProperStrand	1	chr19	9725159	9725259	LINE	L1_Mus1	L1	chr19L1_Mus19723461	ProperStrand	1	1	-inf
chr11	109011850	109011873	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	34430093	34430210	protein_coding	Ptpn20	intron	ENSMUSG00000021940	NonProperStrand	15	1	-8.8900
chrX	102187844	102187916	LINE	L1Md_F2	L1	chrXL1Md_F2102187802	NonProperStrand	10	chr5	131519766	131519852	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	1	-12.4415
chr11	105163803	105163870	protein_coding	Mrc2	intron	ENSMUSG00000020695	NonProperStrand	8	chr9	123462082	123462146	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr10	86270128	86270228	protein_coding	Nt5dc3	intron	ENSMUSG00000054027	ProperStrand	2	chr10	69476685	69476775	protein_coding	Ank3	intron	ENSMUSG00000069601	ProperStrand	58	1	-19.1639
chr1	105981334	105981401	LINE	Lx6	L1	chr1Lx6105980916	NonProperStrand	1	chr17	39845991	39846048	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr17	39842998	39843051	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr6	43336250	43336345	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	1	-6.2337
chr7	28954279	28954338	SINE	B3	B2	chr7B328954260	NonProperStrand	1	chr9	123461802	123461851	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	77473330	77473430	LTR	MurERV4_19-int	ERVK	chr8MurERV4_19-int77473160	NonProperStrand	2	chr8	77473463	77473553	LTR	ORR1E	MaLR	chr8ORR1E77473418	NonProperStrand	2	2	-inf
chr7	74920748	74920838	LTR	RMER20B	ERVK	chr7RMER20B74920489	ProperStrand	1	chr7	74921094	74921194	Low_complexity	GA-rich	Low_complexity	chr7GA-rich74921073	ProperStrand	1	1	-inf
chr5	27037414	27037504	LTR	MTE2a	MaLR	chr5MTE2a27037175	NonProperStrand	1	chr5	27037580	27037680	LTR	MTEb	MaLR	chr5MTEb27037526	NonProperStrand	2	1	-inf
chr12	12777377	12777498	DNA	URR1B	MER1_type	chr12URR1B12777274	ProperStrand	1	chr11	51646206	51646223	protein_coding	Phf15	intron	ENSMUSG00000020387	NonProperStrand	11	1	-inf
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr5	121205007	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-10.1361
chr6	25943029	25943045	LINE	L1Md_F2	L1	chr6L1Md_F225942760	ProperStrand	1	chr9	59671589	59671689	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-inf
chr1	171009901	171010001	Simple_repeat	(TAGA)n	Simple_repeat	chr1(TAGA)n171009877	NonProperStrand	1	chr1	170212394	170212484	protein_coding	Pbx1	intron	ENSMUSG00000052534	ProperStrand	32	1	-inf
chr3	9542485	9542614	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-3.2537
chr1	74737038	74737138	protein_coding-noncoding	Ttll4	utr5	ENSMUSG00000033257	NonProperStrand	1	chr1	74737262	74737352	protein_coding	Ttll4	intron	ENSMUSG00000033257	NonProperStrand	3	1	-inf
chr11	113052563	113052610	lincRNA	2610035D17Rik	intron	ENSMUSG00000087259	ProperStrand	10	chr11	3647835	3647896	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	1	-15.4542
chr15	35163073	35163192	Other	RMER1B	Other	chr15RMER1B35162451	NonProperStrand	1	chr12	8276074	8276093	protein_coding	1110057K04Rik	intron	ENSMUSG00000037669	NonProperStrand	6	1	-inf
chrX	53253643	53253668	LINE	L1Md_T	L1	chrXL1Md_T53252027	ProperStrand	4	chr2	160720962	160721048	protein_coding	Lpin3	intron	ENSMUSG00000027412	ProperStrand	12	1	-22.2547
chr10	23785346	23785822	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr9	123461801	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	6	-3.7780
chr15	77767192	77767282	LTR	MTEa	MaLR	chr15MTEa77767103	NonProperStrand	1	chr15	77766806	77767161	SINE	RSINE1	B4	chr15RSINE177766716	NonProperStrand	1	1	-inf
chr10	75708006	75708111	LTR	RLTR20A	ERVK	chr10RLTR20A75707902	ProperStrand	1	chr9	21670564	21672079	SINE	B1_Mur3	Alu	chr9B1_Mur321672020	ProperStrand	3	1	-inf
chr15	101260163	101260263	protein_coding	Krt7	utr3	ENSMUSG00000023039	ProperStrand	24	chr15	101264775	101264865	protein_coding	Krt83	intron	ENSMUSG00000047641	NonProperStrand	30	1	-15.2905
chr16	5249432	5250480	protein_coding-noncoding	Fam86	utr3	ENSMUSG00000022544	ProperStrand	1	chr16	5250514	5253070	protein_coding	Fam86	intron	ENSMUSG00000022544	ProperStrand	10	1	-inf
chr5	90912120	90912160	LINE	Lx2B	L1	chr5Lx2B90910567	NonProperStrand	1	chr1	33562829	33562934	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	1	-inf
chr1	132935804	132935894	LINE	Lx7	L1	chr1Lx7132935779	NonProperStrand	1	chr1	132935668	132935768	LTR	MTD	MaLR	chr1MTD132935530	NonProperStrand	1	1	-inf
chr17	39847552	39847637	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	78602936	78603002	LTR	RLTR16	ERVK	chr8RLTR1678602771	NonProperStrand	2	1	-5.4040
chr8	79164443	79164515	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	126	chr2	32679112	32679140	protein_coding	Stxbp1	intron	ENSMUSG00000026797	NonProperStrand	32	1	-11.8021
chr8	76054783	76054873	LTR	IAPEz-int	ERVK	chr8IAPEz-int76048408	NonProperStrand	1	chr8	76054956	76055056	LTR	IAPLTR1a_Mm	ERVK	chr8IAPLTR1a_Mm76054916	NonProperStrand	1	1	-inf
chr12	78350927	78351011	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-3.9057
chr11	82806596	82806640	LTR	MTA_Mm	MaLR	chr11MTA_Mm82806435	ProperStrand	1	chr7	19696835	19696869	protein_coding	Gm4969	intron	ENSMUSG00000085601	ProperStrand	72	1	-inf
chr12	105680433	105680523	SINE	PB1D10	Alu	chr12PB1D10105680401	ProperStrand	1	chr12	105680738	105680838	Simple_repeat	(CAGGA)n	Simple_repeat	chr12(CAGGA)n105680546	ProperStrand	1	1	-inf
chr7	29443048	29443104	LTR	MTA_Mm-int	MaLR	chr7MTA_Mm-int29442961	NonProperStrand	1	chr7	29444159	29444249	LTR	MTA_Mm	MaLR	chr7MTA_Mm29444058	NonProperStrand	1	1	-inf
chr13	47932023	47932039	LTR	ORR1E	MaLR	chr13ORR1E47932026	NonProperStrand	6	chr9	123462046	123462076	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr14	45387438	45387538	LTR	IAPEY3-int	ERVK	chr14IAPEY3-int45379901	NonProperStrand	9	chr14	45387541	45387631	LTR	IAPEY3_LTR	ERVK	chr14IAPEY3_LTR45387527	NonProperStrand	5	5	-inf
chr17	39846759	39846832	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	116171063	116171149	protein_coding-noncoding	Tub	utr5	ENSMUSG00000031028	NonProperStrand	5	1	-3.1907
chr5	146261006	146261236	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	5379242	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	11	-5.0092
chr2	178851467	178851488	LTR	MERVL_2A-int	ERVL	chr2MERVL_2A-int178851441	ProperStrand	1	chr9	123462127	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39846760	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	151497014	151497081	LTR	RLTR13C1	ERVK	chr1RLTR13C1151496452	NonProperStrand	1	1	-inf
chr18	35135259	35135349	LINE	Lx5	L1	chr18Lx535134784	ProperStrand	2	chr18	35135396	35135496	SINE	B2_Mm1t	B2	chr18B2_Mm1t35135366	ProperStrand	2	2	-inf
chr3	90356858	90356962	SINE	B1F2	Alu	chr3B1F290356860	NonProperStrand	2	chr3	90356770	90356860	SINE	B1F	Alu	chr3B1F90356771	ProperStrand	2	2	-inf
chr9	40224350	40224478	protein_coding	Gramd1b	intron	ENSMUSG00000040111	ProperStrand	431	chr4	24628597	24628616	protein_coding	Klhl32	intron	ENSMUSG00000040387	ProperStrand	26	1	-9.7642
chr14	54122852	54122942	LINE	L1MA4A	L1	chr14L1MA4A54122819	ProperStrand	1	chr14	54123103	54123203	LTR	RLTR13A	ERVK	chr14RLTR13A54122920	NonProperStrand	1	1	-inf
chr1	149653425	149653442	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int149652500	ProperStrand	16	chr14	21659287	21659330	protein_coding	Plau	intron	ENSMUSG00000021822	ProperStrand	53	1	-14.9627
chr17	39848486	39848536	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	163995284	163995344	protein_coding	Kcns1	intron	ENSMUSG00000040164	NonProperStrand	1	1	-inf
chr3	75621450	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr5	146260994	146261024	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-5.9062
chr17	35244208	35244245	LTR	MT2C_Mm	ERVL	chr17MT2C_Mm35244201	NonProperStrand	1	chr2	154884386	154887709	SINE	B2_Mm1a	B2	chr2B2_Mm1a154884289	NonProperStrand	5	1	-inf
chr14	45461879	45462177	LTR	RMER17C-int	ERVK	chr14RMER17C-int45461937	ProperStrand	1	chr17	39847440	39847460	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	143220740	143220768	LTR	MTEa	MaLR	chr7MTEa143220529	NonProperStrand	2	chr9	123462125	123462163	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr2	7806581	7806671	LINE	L1_Mus1	L1	chr2L1_Mus17805084	NonProperStrand	1	chr2	7806877	7806977	LTR	MTA_Mm	MaLR	chr2MTA_Mm7806835	NonProperStrand	1	1	-inf
chr16	17253507	17253607	protein_coding	Hic2	intron	ENSMUSG00000050240	NonProperStrand	1	chr16	55869398	55869488	protein_coding	Fam55c	intron	ENSMUSG00000075033	NonProperStrand	4	1	-inf
chr1	141457766	141457856	LINE	L1M2	L1	chr1L1M2141457766	ProperStrand	1	chr1	141457612	141457712	LINE	Lx9	L1	chr1Lx9141457054	ProperStrand	1	1	-inf
chr1	112230816	112230916	LINE	Lx9	L1	chr1Lx9112230845	NonProperStrand	1	chr1	112230543	112230633	LTR	IAPLTR1_Mm	ERVK	chr1IAPLTR1_Mm112230500	ProperStrand	1	1	-inf
chr1	63576871	63579386	protein_coding-noncoding	Adam23	utr5	ENSMUSG00000025964	ProperStrand	31	chr1	63575391	63587115	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	11	-21.8573
chr11	116757702	116757744	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr6	134722313	134722360	protein_coding	Dusp16	intron	ENSMUSG00000030203	ProperStrand	47	1	-13.1412
chr11	77692689	77692779	LTR	MTE2a	MaLR	chr11MTE2a77692387	NonProperStrand	6	chr11	77692807	77692907	SINE	B1_Mus2	Alu	chr11B1_Mus277692793	ProperStrand	5	1	-inf
chr9	15352950	15352971	LTR	RLTR13C2	ERVK	chr9RLTR13C215352477	ProperStrand	1	chr9	47691944	47692049	SINE	B1F2	Alu	chr9B1F247691916	ProperStrand	1	1	-inf
chr14	81333199	81333299	LINE	Lx3A	L1	chr14Lx3A81332176	NonProperStrand	1	chr5	109245547	109245637	LINE	L1Md_Gf	L1	chr5L1Md_Gf109244536	NonProperStrand	2	1	-inf
chr2	167065003	167065049	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr5	96133494	96133550	protein_coding	Gm7971	intron	ENSMUSG00000079422	ProperStrand	30	1	-12.8207
chr5	115614502	115614569	SINE	B2_Mm1t	B2	chr5B2_Mm1t115614437	NonProperStrand	12	chr1	59838644	59838701	protein_coding	Bmpr2	intron	ENSMUSG00000067336	ProperStrand	65	1	-15.1531
chr9	8990820	8990887	LINE	L1_Mus4	L1	chr9L1_Mus48988668	ProperStrand	1	chr16	98077162	98077255	protein_coding	C2cd2	utr3	ENSMUSG00000045975	ProperStrand	23	1	-inf
chr2	4204882	4204982	protein_coding	Frmd4a	intron	ENSMUSG00000026657	ProperStrand	20	chr6	61709269	61709359	protein_coding	Fam190a	intron	ENSMUSG00000039578	ProperStrand	28	1	-15.8087
chr9	40803581	40804822	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr9	56257894	56257913	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	2	-6.7312
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr11	106066807	106066832	protein_coding-noncoding	Ccdc47	utr3	ENSMUSG00000078622	NonProperStrand	17	1	-15.5144
chr9	49704083	49704137	SINE	B1_Mus2	Alu	chr9B1_Mus249704063	NonProperStrand	2	chr10	128022161	128022225	protein_coding	Erbb3	exon	ENSMUSG00000018166	NonProperStrand	10	2	-inf
chr17	39846458	39846745	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101458915	101460574	antisense	Gm11634	.	ENSMUSG00000085486	ProperStrand	18	3	-3.4595
chr12	67665344	67665389	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	chrX	84409437	84409527	protein_coding	Il1rapl1	intron	ENSMUSG00000052372	ProperStrand	52	1	-11.8619
chr16	35391637	35391727	SINE	B1F2	Alu	chr16B1F235391585	NonProperStrand	1	chr16	37827139	37827239	protein_coding	Fstl1	intron	ENSMUSG00000022816	NonProperStrand	6	1	-inf
chr4	55390098	55390174	protein_coding	Rad23b	intron	ENSMUSG00000028426	ProperStrand	31	chr8	22940087	22940156	protein_coding	Defb50	intron	ENSMUSG00000058568	ProperStrand	20	1	-15.5984
chr5	121577012	121577034	Low_complexity	G-rich	Low_complexity	chr5G-rich121577002	NonProperStrand	1	chr5	121576899	121576997	SINE	ID_B1	B4	chr5ID_B1121576885	NonProperStrand	1	1	-inf
chr13	109694620	109694733	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr9	119102642	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	10	1	-11.6375
chr4	99129660	99129750	LTR	MTB_Mm	MaLR	chr4MTB_Mm99129661	ProperStrand	1	chr4	99578527	99578625	protein_coding	Itgb3bp	intron	ENSMUSG00000028549	ProperStrand	12	1	-inf
chr1	122357166	122357230	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr1	87433833	87433899	pseudogene	Gm7592	.	ENSMUSG00000090186	ProperStrand	36	1	-9.9373
chr4	43492784	43492893	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr7	29875680	29875708	protein_coding	Ryr1	intron	ENSMUSG00000030592	NonProperStrand	34	1	-8.2299
chr5	37410465	37410555	SINE	B4	B4	chr5B437410372	ProperStrand	1	chr11	3326744	3326844	protein_coding	Rnf185	intron	ENSMUSG00000020448	ProperStrand	20	1	-inf
chr11	68771905	68783114	SINE	B3A	B2	chr11B3A68771918	ProperStrand	8	chr11	68783132	68783232	protein_coding	Slc25a35	intron	ENSMUSG00000018740	ProperStrand	10	6	-inf
chr17	39847090	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	180236150	180258406	protein_coding	Ntsr1	intron	ENSMUSG00000027568	ProperStrand	19	4	-7.4855
chr13	29964215	29964315	LTR	MLT1F	MaLR	chr13MLT1F29964020	NonProperStrand	6	chr13	29964345	29964435	SINE	B1_Mus1	Alu	chr13B1_Mus129964337	ProperStrand	7	2	-inf
chrX	105798418	105798523	LINE	Lx	L1	chrXLx105797291	NonProperStrand	4	chr9	46170471	46170508	Simple_repeat	(GA)n	Simple_repeat	chr9(GA)n46170308	ProperStrand	1	1	-inf
chr10	108336556	108336590	protein_coding-noncoding	Syt1	utr3	ENSMUSG00000035864	NonProperStrand	7	chr10	108335933	108335978	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	169	1	-14.3728
chr8	84676818	84676908	LTR	IAPEY_LTR	ERVK	chr8IAPEY_LTR84676831	ProperStrand	4	chr8	84676713	84676813	LTR	RLTR25B	ERVK	chr8RLTR25B84676479	ProperStrand	5	3	-inf
chr2	5379297	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr17	33823318	33824340	protein_coding	March2	utr3	ENSMUSG00000079557	ProperStrand	31	1	-5.8357
chr17	39846952	39846997	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	37777117	37815714	protein_coding-noncoding	Fstl1	utr5	ENSMUSG00000022816	ProperStrand	1	1	-inf
chr6	100242572	100242663	LINE	L1ME1	L1	chr6L1ME1100242301	NonProperStrand	2	chr7	37340930	37340951	LTR	RLTR11B	ERVK	chr7RLTR11B37340560	NonProperStrand	1	1	-inf
chr17	39848140	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	129200803	129206182	protein_coding-noncoding	Hdac1	utr3	ENSMUSG00000028800	NonProperStrand	5	1	-6.1691
chr1	5752318	5752336	LINE	Lx3_Mus	L1	chr1Lx3_Mus5751750	NonProperStrand	1	chr5	125101686	125101806	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	301	1	-inf
chr4	133744039	133744092	SINE	ID_B1	B4	chr4ID_B1133743984	ProperStrand	1	chr4	133743789	133743837	SINE	PB1D10	Alu	chr4PB1D10133743750	NonProperStrand	1	1	-inf
chr10	76493197	76493279	DNA	URR1B	MER1_type	chr10URR1B76493175	ProperStrand	1	chr13	92244855	92244927	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	103	1	-inf
chr11	119970170	119970222	protein_coding-noncoding	Slc38a10	utr3	ENSMUSG00000061306	NonProperStrand	1	chr11	119961183	119961246	protein_coding	1810043H04Rik	intron	ENSMUSG00000078572	ProperStrand	2	1	-inf
chr5	114852019	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr2	29722258	29724840	protein_coding	Cercam	utr5	ENSMUSG00000039787	ProperStrand	31	1	-10.6359
chr11	97976861	97976895	protein_coding	Fbxl20	intron	ENSMUSG00000020883	ProperStrand	47	chr17	9011648	9011668	protein_coding	Pde10a	intron	ENSMUSG00000023868	NonProperStrand	8	1	-16.6700
chr12	35921986	35922086	LINE	L1M3	L1	chr12L1M335921602	ProperStrand	1	chr12	35922153	35922243	SINE	B3	B2	chr12B335922129	NonProperStrand	1	1	-inf
chr2	30135392	30135482	protein_coding-noncoding	Phyhd1	utr5	ENSMUSG00000079484	ProperStrand	3	chr2	30135481	30135581	protein_coding	Phyhd1	exon	ENSMUSG00000079484	ProperStrand	34	3	-inf
chr1	118985376	118985407	LINE	Lx4A	L1	chr1Lx4A118985015	ProperStrand	3	chr17	39847037	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr3	34058712	34058742	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr5	33265555	33265628	protein_coding	Depdc5	intron	ENSMUSG00000037426	NonProperStrand	42	1	-11.5796
chr16	23110705	23111166	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr18	23628717	23628750	protein_coding	Dtna	intron	ENSMUSG00000024302	ProperStrand	32	1	-11.1787
chr17	86104944	86105036	LINE	HAL1-3A_ME	L1	chr17HAL1-3A_ME86104939	ProperStrand	1	chr17	86104727	86104773	Simple_repeat	(TCTCTG)n	Simple_repeat	chr17(TCTCTG)n86104722	NonProperStrand	1	1	-inf
chr8	48310699	48310748	protein_coding	Stox2	intron	ENSMUSG00000038143	ProperStrand	98	chr7	3490625	3490708	protein_coding	Tarm1	intron	ENSMUSG00000053338	ProperStrand	5	1	-16.2259
chr1	131573980	131574036	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	chr3	138877197	138877263	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	61	1	-8.9325
chr5	140035447	140035484	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	chr17	33824629	33825634	protein_coding	March2	utr3	ENSMUSG00000079557	NonProperStrand	33	1	-9.8015
chr5	146261160	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	119809312	119809383	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	NonProperStrand	22	1	-7.0496
chr4	25782895	25782928	LINE	L1_Mur3	L1	chr4L1_Mur325782222	ProperStrand	1	chr4	25787712	25787808	LINE	Lx6	L1	chr4Lx625787716	NonProperStrand	1	1	-inf
chr12	110504709	110504732	LINE	Lx8	L1	chr12Lx8110504264	ProperStrand	18	chr12	110508247	110508374	LINE	Lx9	L1	chr12Lx9110507735	NonProperStrand	3	1	-21.7122
chrX	142835560	142835654	LINE	L1_Mus3	L1	chrXL1_Mus3142835516	ProperStrand	1	chrX	142838011	142838074	LINE	Lx9	L1	chrXLx9142837723	ProperStrand	1	1	-inf
chr14	26398700	26398719	protein_coding	Zmiz1	intron	ENSMUSG00000007817	NonProperStrand	61	chr19	6291047	6291171	protein_coding	Ehd1	intron	ENSMUSG00000024772	ProperStrand	30	1	-13.3903
chr4	109213412	109213512	LINE	L1Md_A	L1	chr4L1Md_A109210837	ProperStrand	2	chr4	119745103	119745193	protein_coding	Hivep3	intron	ENSMUSG00000028634	NonProperStrand	21	1	-20.6625
chr7	27967642	27967746	LTR	ORR1C2	MaLR	chr7ORR1C227967608	NonProperStrand	1	chr7	27965093	27965120	protein_coding	Mia1	intron	ENSMUSG00000089661	ProperStrand	4	1	-inf
chr17	39847230	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	31220342	31220422	protein_coding	Emilin1	exon	ENSMUSG00000029163	NonProperStrand	3	1	-5.4882
chr4	23881795	23881895	LINE	Lx2B	L1	chr4Lx2B23881823	ProperStrand	2	chr4	23881683	23881773	LTR	MLT1A1	MaLR	chr4MLT1A123881688	ProperStrand	2	2	-inf
chr17	68487075	68487175	DNA	MER44A	MER2_type	chr17MER44A68487072	NonProperStrand	1	chr17	68487400	68487490	SINE	B3	B2	chr17B368487388	NonProperStrand	1	1	-inf
chr6	141572119	141572193	LINE	Lx3C	L1	chr6Lx3C141571928	NonProperStrand	1	chr6	141572333	141572417	LTR	MTA_Mm	MaLR	chr6MTA_Mm141572251	ProperStrand	1	1	-inf
chr8	72479065	72479088	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	chr4	32895081	32895215	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	2	-13.2759
chr11	109011810	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	27561504	27562449	protein_coding	Grm4	intron	ENSMUSG00000063239	ProperStrand	250	1	-3.3761
chr14	19278161	19278203	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr7	73457028	73457131	protein_coding	Lrrk1	intron	ENSMUSG00000015133	ProperStrand	120	1	-10.1553
chr16	36035457	36035561	protein_coding	Kpna1	utr3	ENSMUSG00000022905	ProperStrand	174	chr7	99441184	99441200	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-5.3300
chr17	39847182	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	42958089	42958105	protein_coding	Pdss2	intron	ENSMUSG00000038240	ProperStrand	6	1	-3.9545
chr1	100180282	100180305	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr4	43492783	43492852	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	1	-5.7586
chr17	39847698	39847731	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	11705929	11706003	protein_coding	Cdh17	intron	ENSMUSG00000028217	ProperStrand	2	1	-5.4040
chrX	101668111	101668137	LINE	L1M4b	L1	chrXL1M4b101667905	NonProperStrand	1	chr11	35239622	35239672	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-inf
chr12	116465881	116465982	LTR	ORR1A2-int	MaLR	chr12ORR1A2-int116465859	ProperStrand	7	chr12	116465769	116465859	LTR	ORR1A2	MaLR	chr12ORR1A2116465757	ProperStrand	2	2	-inf
chr11	8567649	8567739	LTR	MLT2B2	ERVL	chr11MLT2B28567645	NonProperStrand	1	chr11	8567552	8567652	SINE	B1_Mus2	Alu	chr11B1_Mus28567504	ProperStrand	1	1	-inf
chr3	124117250	124117340	protein_coding	1700006A11Rik	exon	ENSMUSG00000027973	ProperStrand	2	chr3	105431697	105431797	protein_coding	Kcnd3	intron	ENSMUSG00000040896	ProperStrand	7	1	-21.1088
chr19	8992312	8992353	SINE	PB1D10	Alu	chr19PB1D108992316	NonProperStrand	1	chr19	8995770	8995848	protein_coding	B3gat3	intron	ENSMUSG00000071649	ProperStrand	33	1	-inf
chr18	67434738	67434838	LTR	MT2A	ERVL	chr18MT2A67434677	ProperStrand	1	chr18	67434906	67434996	LTR	MT2A	ERVL	chr18MT2A67434879	ProperStrand	1	1	-inf
chr7	102009144	102009327	LTR	MTA_Mm	MaLR	chr7MTA_Mm102008804	ProperStrand	1	chr7	102009325	102009415	SINE	B3A	B2	chr7B3A102009288	ProperStrand	2	1	-inf
chr17	39846419	39846505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	64813072	64813110	SINE	MIR	MIR	chr5MIR64812983	ProperStrand	1	1	-inf
chr17	39848163	39848202	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	38347050	38347167	protein_coding	Cox17	utr5	ENSMUSG00000046516	ProperStrand	6	1	-5.7734
chr5	114852005	114852031	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr8	84417839	84417968	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-3.8965
chr13	63124999	63125094	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	chr16	30308258	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	58	1	-8.8943
chr17	39847323	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	30070195	30070237	SINE	B1_Mur4	Alu	chr2B1_Mur430070169	ProperStrand	5	1	-4.3348
chr1	79607148	79607238	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	10	chr18	44901481	44901579	protein_coding	Mcc	intron	ENSMUSG00000071856	NonProperStrand	20	1	-17.9669
chr17	39847129	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	19151273	19152513	protein_coding	Psg27	intron	ENSMUSG00000070797	NonProperStrand	12	2	-4.7040
chr9	123462056	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	110566474	110566511	protein_coding	Usp17l5	exon	ENSMUSG00000058976	NonProperStrand	1	1	-inf
chr17	70963685	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	15931651	15931695	protein_coding	2310008H04Rik	intron	ENSMUSG00000041974	ProperStrand	108	1	-5.0590
chr11	117312582	117312672	LTR	MLT2B1	ERVL	chr11MLT2B1117312200	ProperStrand	1	chr17	39847540	39847640	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	43706132	43706148	LINE	L1Md_A	L1	chr5L1Md_A43704847	NonProperStrand	6	chr7	13025682	13027624	SINE	PB1D10	Alu	chr7PB1D1013025647	NonProperStrand	14	1	-19.6103
chr18	46734150	46734228	protein_coding	Tmed7	intron	ENSMUSG00000033184	ProperStrand	4	chr18	46733804	46733865	protein_coding	Ticam2	intron	ENSMUSG00000056130	ProperStrand	4	1	-inf
chr10	127909832	127909848	protein_coding	Smarcc2	intron	ENSMUSG00000025369	NonProperStrand	2	chr9	110281288	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-15.0096
chr17	33907851	33907951	LTR	RMER19A	ERVK	chr17RMER19A33907801	ProperStrand	1	chr17	33907657	33907747	SINE	B1_Mm	Alu	chr17B1_Mm33907590	ProperStrand	1	1	-inf
chr12	78350926	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr13	23571760	23571797	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	1	-6.8008
chr2	125623850	125623880	LTR	ORR1C2	MaLR	chr2ORR1C2125623617	ProperStrand	1	chr4	116635862	116635902	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-inf
chr5	33510865	33511129	LINE	L1MC3	L1	chr5L1MC333510876	NonProperStrand	69	chr5	33510495	33510870	LTR	MTD	MaLR	chr5MTD33510478	NonProperStrand	8	2	-19.7916
chr17	39848106	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr18	44872890	44872925	protein_coding	Mcc	intron	ENSMUSG00000071856	NonProperStrand	20	1	-3.3703
chr17	67797859	67797913	LINE	L1MEg	L1	chr17L1MEg67797691	ProperStrand	1	chrX	49139193	49139232	protein_coding	Usp26	intron	ENSMUSG00000055780	ProperStrand	6	1	-inf
chr4	3927034	3927127	protein_coding	Sdr16c5	intron	ENSMUSG00000028236	ProperStrand	16	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chr3	95636538	95636628	protein_coding-noncoding	Prpf3	utr3	ENSMUSG00000015748	ProperStrand	1	chr3	95636409	95636509	protein_coding	Prpf3	intron	ENSMUSG00000015748	ProperStrand	8	1	-inf
chr11	26656030	26656120	LINE	L1_Mus2	L1	chr11L1_Mus226656017	NonProperStrand	1	chr11	26655788	26655888	LINE	Lx8	L1	chr11Lx826655596	ProperStrand	1	1	-inf
chr18	70468043	70468096	LINE	L1VL4	L1	chr18L1VL470466901	NonProperStrand	1	chrX	106194702	106196860	LINE	Lx8	L1	chrXLx8106194372	NonProperStrand	35	1	-inf
chr15	99199938	99200036	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	chr5	131990678	131990725	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-6.2363
chr12	86054824	86054864	SINE	B4A	B4	chr12B4A86054831	ProperStrand	1	chr12	86025026	86025093	protein_coding	Tmem90a	intron	ENSMUSG00000071234	NonProperStrand	27	1	-inf
chr7	109661067	109661116	SINE	MIRb	MIR	chr7MIRb109661034	NonProperStrand	1	chr13	44869578	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr10	48559778	48559868	LINE	L1Md_F2	L1	chr10L1Md_F248558643	NonProperStrand	1	chr10	48559950	48560050	LINE	L1Md_F	L1	chr10L1Md_F48559854	NonProperStrand	1	1	-inf
chr11	109011655	109011715	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	76966975	76967076	protein_coding-noncoding	Exoc1	utr5	ENSMUSG00000036435	ProperStrand	23	1	-8.0167
chr7	6609207	6609262	LTR	MTC	MaLR	chr7MTC6609041	NonProperStrand	2	chr9	123025804	123025823	protein_coding	Exosc7	intron	ENSMUSG00000025785	NonProperStrand	3	1	-20.8297
chr16	14376010	14376087	protein_coding	Abcc1	intron	ENSMUSG00000023088	ProperStrand	122	chr5	140811796	140811851	protein_coding	Nudt1	utr3	ENSMUSG00000036639	NonProperStrand	5	1	-15.7618
chr12	56042318	56042408	protein_coding-noncoding	Baz1a	utr3	ENSMUSG00000035021	NonProperStrand	1	chr12	56042731	56042831	protein_coding	Baz1a	intron	ENSMUSG00000035021	NonProperStrand	6	1	-inf
chr11	23001370	23001410	SINE	ID_B1	B4	chr11ID_B123001186	NonProperStrand	1	chr11	23000867	23001370	SINE	RSINE1	B4	chr11RSINE123000854	NonProperStrand	1	1	-inf
chr3	105762439	105762564	protein_coding	Atp5f1	utr5	ENSMUSG00000000563	ProperStrand	6	chr6	118425883	118425906	protein_coding	Zfp9	intron	ENSMUSG00000072623	ProperStrand	10	1	-21.3688
chr3	8975231	8975289	protein_coding	Tpd52	intron	ENSMUSG00000027506	ProperStrand	278	chr8	126940291	126940358	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-7.6693
chr17	39846883	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	43895437	43895456	SINE	ID_B1	B4	chr10ID_B143895432	NonProperStrand	1	1	-inf
chr4	123543970	123544087	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int123540352	ProperStrand	12	chr15	25812469	25812495	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	163	1	-13.3018
chr1	153876479	153876510	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	NonProperStrand	52	chr2	156738362	156738383	pseudogene	Gm14278	.	ENSMUSG00000080880	NonProperStrand	97	3	-20.8204
chr17	39846492	39846554	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	86504379	86504453	Simple_repeat	(TTCC)n	Simple_repeat	chr12(TTCC)n86504147	NonProperStrand	1	1	-inf
chr2	36341903	36342003	LINE	L1_Mur2	L1	chr2L1_Mur236341835	NonProperStrand	1	chr2	36342269	36342359	LINE	Lx4A	L1	chr2Lx4A36342056	ProperStrand	1	1	-inf
chr3	91164164	91164264	LINE	L1_Mus3	L1	chr3L1_Mus391163092	NonProperStrand	1	chr3	91164336	91164426	LINE	L1_Mus3	L1	chr3L1_Mus391164333	NonProperStrand	1	1	-inf
chr2	147044908	147044985	lincRNA	Nkx2-2as	intron	ENSMUSG00000086509	ProperStrand	37	chr13	44869586	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.4298
chr5	31073248	31073528	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr9	68784496	68784577	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	1	-7.3200
chr1	89694704	89694773	SINE	B3A	B2	chr1B3A89694669	NonProperStrand	1	chr1	89709598	89709679	protein_coding	Sag	intron	ENSMUSG00000056055	ProperStrand	125	1	-inf
chr3	89183462	89183478	protein_coding	Zbtb7b	exon	ENSMUSG00000028042	ProperStrand	1	chr11	88471479	88471600	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-inf
chr11	69401648	69401929	protein_coding-noncoding	Trp53	utr5	ENSMUSG00000059552	NonProperStrand	1	chr11	69401821	69402091	protein_coding	Trp53	exon	ENSMUSG00000059552	NonProperStrand	12	1	-inf
chr12	109635962	109636083	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	chr9	121712826	121712844	protein_coding	Ccdc13	intron	ENSMUSG00000079235	NonProperStrand	17	1	-10.3442
chr17	39847172	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	122599589	122599680	LTR	RMER10B	ERVL	chr5RMER10B122599408	NonProperStrand	1	1	-inf
chr1	5117427	5124278	protein_coding	Atp6v1h	intron	ENSMUSG00000033793	ProperStrand	26	chr2	5379283	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.1854
chr11	32717055	32717147	Other	RMER1B	Other	chr11RMER1B32716785	ProperStrand	2	chr11	32718755	32718816	protein_coding	1700008A04Rik	intron	ENSMUSG00000020270	NonProperStrand	7	2	-inf
chr4	138972399	138972489	protein_coding-noncoding	Ubr4	utr5	ENSMUSG00000066036	ProperStrand	1	chr4	138972484	138972584	protein_coding	Ubr4	exon	ENSMUSG00000066036	ProperStrand	42	1	-inf
chr17	39847578	39847620	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	53656469	53656595	LTR	MTA_Mm	MaLR	chr5MTA_Mm53656286	ProperStrand	6	5	-16.2482
chr9	58220302	58220427	LTR	MTB	MaLR	chr9MTB58220336	NonProperStrand	6	chr8	125544558	125544585	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-12.7985
chr17	39846705	39846759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	89897486	89897552	protein_coding	Tpm3	intron	ENSMUSG00000027940	NonProperStrand	1	1	-inf
chr1	16035283	16035315	SINE	B4A	B4	chr1B4A16035218	ProperStrand	1	chr16	30573358	30580964	protein_coding	Lsg1	intron	ENSMUSG00000022538	ProperStrand	31	1	-inf
chr9	108045723	108045784	protein_coding	Bsn	intron	ENSMUSG00000032589	NonProperStrand	80	chr3	108554397	108554482	protein_coding	Aknad1	utr5	ENSMUSG00000049565	NonProperStrand	220	1	-8.8413
chr9	123461816	123462158	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr17	56009386	56015976	protein_coding	Zfp119a	intron	ENSMUSG00000057835	NonProperStrand	21	2	-5.1898
chr17	21751615	21751693	LTR	RLTR9A	ERVK	chr17RLTR9A21751565	NonProperStrand	2	chr3	79540374	79540445	protein_coding	Rxfp1	intron	ENSMUSG00000034009	ProperStrand	199	2	-inf
chr8	86692270	86692311	protein_coding	4930432K21Rik	intron	ENSMUSG00000008129	ProperStrand	37	chr11	23341779	23341830	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	1	-11.1192
chr6	23832291	23832381	LINE	L1MA4	L1	chr6L1MA423832301	ProperStrand	2	chr6	23831930	23832030	LINE	L1MC	L1	chr6L1MC23831867	ProperStrand	1	1	-inf
chr17	39842998	39843079	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr5	140513239	140513285	protein_coding	Mad1l1	intron	ENSMUSG00000029554	NonProperStrand	52	1	-5.6661
chr10	30615584	30615684	LINE	L1M4	L1	chr10L1M430615461	ProperStrand	1	chr10	30618026	30618116	LTR	ORR1E	MaLR	chr10ORR1E30617860	NonProperStrand	1	1	-inf
chr1	72178672	72179012	LTR	IAPEz-int	ERVK	chr1IAPEz-int72172467	ProperStrand	26	chr1	72179014	72179155	LTR	IAPLTR1a_Mm	ERVK	chr1IAPLTR1a_Mm72178984	ProperStrand	5	2	-inf
chr17	39846944	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	126389677	126389748	LTR	MLT1H-int	MaLR	chr7MLT1H-int126389576	NonProperStrand	1	1	-inf
chr6	33454466	33454566	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr11	101323780	101323868	protein_coding	Vat1	exon	ENSMUSG00000034993	NonProperStrand	9	1	-10.6813
chr17	39846871	39846978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	99858489	99858532	Simple_repeat	(CAGTG)n	Simple_repeat	chr15(CAGTG)n99858356	NonProperStrand	1	1	-inf
chrX	151891075	151891146	LINE	L1M3	L1	chrXL1M3151890104	NonProperStrand	1	chr14	18786393	18786451	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	1	-inf
chrX	74227215	74227244	LINE	L1Md_F2	L1	chrXL1Md_F274226898	NonProperStrand	14	chr10	82879467	82879567	LTR	MT2_Mm	ERVL	chr10MT2_Mm82879479	ProperStrand	9	1	-18.9138
chr4	118371972	118372141	LINE	Lx2B	L1	chr4Lx2B118371029	NonProperStrand	5	chr2	180594388	180594422	lincRNA	Gm14342	intron	ENSMUSG00000086166	NonProperStrand	22	1	-20.2749
chr11	85825365	85825433	LINE	Lx8	L1	chr11Lx885825289	NonProperStrand	1	chr11	85581176	85581219	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-inf
chr6	30132458	30132536	SINE	B1_Mus2	Alu	chr6B1_Mus230132462	NonProperStrand	1	chr18	24902167	24902239	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	1	-inf
chr1	100180180	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr19	33224416	33224524	protein_coding	Rnls	intron	ENSMUSG00000071573	ProperStrand	11	1	-14.1331
chr13	49492627	49492670	SINE	B1_Mur1	Alu	chr13B1_Mur149492620	ProperStrand	1	chr13	49487391	49487470	SINE	B1_Mur4	Alu	chr13B1_Mur449487384	NonProperStrand	1	1	-inf
chr8	72401192	72401325	SINE	RSINE1	B4	chr8RSINE172401187	NonProperStrand	1	chr9	123462014	123462038	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	142301565	142307586	protein_coding-noncoding	Pyroxd1	utr5	ENSMUSG00000041671	ProperStrand	2	chr6	142301419	142307713	protein_coding	Pyroxd1	intron	ENSMUSG00000041671	ProperStrand	2	2	-inf
chr12	31717255	31717323	LINE	L1MB3	L1	chr12L1MB331716632	NonProperStrand	1	chr6	87997228	87997260	SINE	B1_Mur4	Alu	chr6B1_Mur487997219	ProperStrand	15	1	-inf
chr15	34110696	34110736	Low_complexity	A-rich	Low_complexity	chr15A-rich34110681	ProperStrand	1	chr15	88767721	88767794	protein_coding	Ttll8	intron	ENSMUSG00000022388	NonProperStrand	36	1	-inf
chr11	97500496	97500600	Simple_repeat	(CATG)n	Simple_repeat	chr11(CATG)n97500412	ProperStrand	2	chr11	97500599	97500723	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n97500617	ProperStrand	2	2	-inf
chr3	59899680	59899780	LTR	ORR1A2	MaLR	chr3ORR1A259899580	ProperStrand	1	chr3	59899433	59899523	SINE	B3	B2	chr3B359899314	NonProperStrand	1	1	-inf
chr1	48730278	48730378	LTR	IAPEz-int	ERVK	chr1IAPEz-int48729538	ProperStrand	1	chr1	48730521	48730611	LTR	IAPLTR2_Mm	ERVK	chr1IAPLTR2_Mm48730402	ProperStrand	1	1	-inf
chr16	52034509	52034564	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	chr10	128323608	128323689	protein_coding	Gdf11	intron	ENSMUSG00000025352	NonProperStrand	8	1	-15.2628
chr5	80878758	80878858	LINE	L1_Mm	L1	chr5L1_Mm80875716	NonProperStrand	1	chr5	80878948	80879038	LINE	Lx7	L1	chr5Lx780878931	ProperStrand	1	1	-inf
chr4	38886490	38886590	LINE	L1VL4	L1	chr4L1VL438886376	NonProperStrand	1	chr4	38886276	38886366	LINE	L1_Mus1	L1	chr4L1_Mus138884376	ProperStrand	1	1	-inf
chr4	62645299	62645399	protein_coding	Zfp618	intron	ENSMUSG00000028358	ProperStrand	65	chr5	147078657	147078747	protein_coding	Cdk8	intron	ENSMUSG00000029635	ProperStrand	81	2	-17.6273
chr9	21212006	21212088	lincRNA	Gm16853	intron	ENSMUSG00000086062	NonProperStrand	2	chr4	32917611	32917661	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	1	-17.5923
chr7	127552754	127552893	SINE	B3	B2	chr7B3127552844	ProperStrand	2	chr2	90395156	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-17.1342
chr17	39846353	39846395	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	75913561	75913643	LTR	RLTR13D3	ERVK	chr18RLTR13D375913222	ProperStrand	1	1	-inf
chr15	8073576	8073676	protein_coding	Nup155	intron	ENSMUSG00000022142	NonProperStrand	40	chr3	31205932	31206022	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	23	1	-14.7897
chr15	64286191	64286273	LINE	L1Md_A	L1	chr15L1Md_A64281152	NonProperStrand	5	chr15	64287479	64287526	LTR	MTE2a	MaLR	chr15MTE2a64287436	NonProperStrand	3	1	-inf
chr13	44869575	44869675	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr16	91702229	91702319	protein_coding	Cryzl1	intron	ENSMUSG00000058240	ProperStrand	22	1	-6.4623
chr15	12837362	12842087	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	chr9	78521871	78521955	protein_coding	Cd109	intron	ENSMUSG00000046186	ProperStrand	25	1	-13.5154
chr4	142170411	142170511	SINE	MIR	MIR	chr4MIR142170435	ProperStrand	4	chr4	142170525	142170615	SINE	RSINE1	B4	chr4RSINE1142170548	NonProperStrand	4	3	-inf
chr5	40862946	40863036	LTR	IAPEz-int	ERVK	chr5IAPEz-int40862969	ProperStrand	1	chr5	40862688	40862788	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm40862511	ProperStrand	1	1	-inf
chr10	77064550	77066951	LINE	L1MEg	L1	chr10L1MEg77065146	ProperStrand	2	chr10	77066964	77067408	SINE	B3A	B2	chr10B3A77066944	ProperStrand	2	2	-inf
chr6	11900491	11900517	protein_coding	Phf14	intron	ENSMUSG00000029629	NonProperStrand	12	chr7	7130832	7130848	protein_coding	Zfp418	intron	ENSMUSG00000034538	ProperStrand	3	1	-inf
chr9	65201724	65201809	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr4	106937373	106937448	protein_coding	Hspb11	intron	ENSMUSG00000063172	ProperStrand	93	1	-10.1766
chr9	123461866	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	107339348	107339408	protein_coding	Hfm1	intron	ENSMUSG00000043410	NonProperStrand	3	1	-7.0114
chr1	122357166	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr5	146260994	146261118	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	29	-20.8866
chr12	111810886	111810986	protein_coding	Ppp2r5c	intron	ENSMUSG00000017843	NonProperStrand	26	chr2	157283772	157289612	protein_coding	Src	intron	ENSMUSG00000027646	ProperStrand	33	4	-inf
chr13	96659896	96659933	protein_coding	Iqgap2	intron	ENSMUSG00000021676	ProperStrand	82	chr2	120526897	120526924	protein_coding	Stard9	exon	ENSMUSG00000033705	NonProperStrand	75	1	-10.9455
chr17	21576735	21576870	SINE	B3	B2	chr17B321576726	ProperStrand	1	chr13	17698461	17698478	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	1	-inf
chr8	85539285	85539361	protein_coding	Rnf150	intron	ENSMUSG00000047747	NonProperStrand	43	chr4	45011901	45011962	protein_coding	Zbtb5	intron	ENSMUSG00000049657	ProperStrand	8	1	-16.8471
chr6	92243835	92243877	LINE	L1_Mus2	L1	chr6L1_Mus292243816	NonProperStrand	11	chr9	114544729	114544800	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-11.4681
chr5	110789479	110789569	SINE	B1_Mur2	Alu	chr5B1_Mur2110789502	NonProperStrand	2	chr5	110789050	110789434	SINE	B2_Mm2	B2	chr5B2_Mm2110789284	ProperStrand	4	2	-inf
chr2	22744880	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	12930799	12930847	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	2	-10.1159
chr7	47188432	47188522	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	chr9	39859841	39859941	protein_coding	1700001J11Rik	exon	ENSMUSG00000066639	ProperStrand	1	1	-inf
chr7	19229416	19229443	LINE	L1Md_F	L1	chr7L1Md_F19229345	NonProperStrand	4	chr7	19241222	19241317	protein_coding	Psg21	intron	ENSMUSG00000070796	NonProperStrand	12	1	-22.2547
chr7	90302575	90302591	protein_coding	A530021J07Rik	intron	ENSMUSG00000053528	NonProperStrand	1	chr16	11529451	11529568	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	1	-inf
chr4	99904793	99904810	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	chr17	5069423	5069530	protein_coding	Arid1b	intron	ENSMUSG00000069729	ProperStrand	340	1	-9.8163
chr13	97190596	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	28898634	28898659	protein_coding	1700101E01Rik	intron	ENSMUSG00000079502	NonProperStrand	122	1	-3.7719
chr11	107173405	107173647	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	chr18	5282061	5282151	protein_coding	Zfp438	intron	ENSMUSG00000050945	ProperStrand	23	1	-10.6721
chr10	117062870	117063708	LTR	ORR1E	MaLR	chr10ORR1E117062865	ProperStrand	5	chr17	39847875	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr16	55998538	55998607	protein_coding	Rpl24	intron	ENSMUSG00000022601	ProperStrand	72	chr3	116641875	116645391	protein_coding	Palmd	intron	ENSMUSG00000033377	ProperStrand	33	1	-12.8645
chr13	44869629	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	167306638	167306697	protein_coding	Spata2	utr3	ENSMUSG00000047030	ProperStrand	27	1	-6.0527
chr15	58931231	58931358	LINE	L1MB7	L1	chr15L1MB758931216	NonProperStrand	1	chr15	58931680	58931700	LTR	MT2_Mm	ERVL	chr15MT2_Mm58931593	NonProperStrand	1	1	-inf
chr2	161156897	161156987	LTR	ORR1E	MaLR	chr2ORR1E161156804	ProperStrand	1	chr2	161157031	161157131	lincRNA	Gm14241	intron	ENSMUSG00000087031	ProperStrand	1	1	-inf
chr11	68802986	68804628	protein_coding	Pfas	intron	ENSMUSG00000020899	ProperStrand	51	chr6	43336250	43336328	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	1	-13.2214
chr6	3201479	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	69247134	69247174	protein_coding	Adam28	exon	ENSMUSG00000014725	ProperStrand	31	1	-4.1133
chr9	105462158	105462248	LTR	MTA_Mm-int	MaLR	chr9MTA_Mm-int105461783	ProperStrand	1	chr9	105461479	105461579	LTR	MTA_Mm	MaLR	chr9MTA_Mm105461394	ProperStrand	1	1	-inf
chr13	9834333	9834372	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr13	34301399	34301416	protein_coding	Slc22a23	intron	ENSMUSG00000038267	ProperStrand	10	1	-12.7718
chr12	99645573	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr4	123435037	123435083	SINE	RSINE1	B4	chr4RSINE1123434975	NonProperStrand	1	1	-inf
chr9	64555079	64555113	protein_coding	Megf11	utr3	ENSMUSG00000036466	ProperStrand	112	chrX	52481879	52481959	protein_coding	Slxl1	intron	ENSMUSG00000067909	NonProperStrand	19	1	-13.1020
chr3	75621448	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	39	chr11	29513442	29513474	lincRNA	Gm12092	intron	ENSMUSG00000084850	ProperStrand	4	1	-18.7666
chr12	69158721	69159026	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	chr7	3704664	3704727	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	64	1	-13.1632
chr17	46202795	46202877	SINE	B4A	B4	chr17B4A46202709	NonProperStrand	4	chr18	84813492	84813562	protein_coding	Cndp1	intron	ENSMUSG00000056162	ProperStrand	26	1	-20.6287
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr7	134744036	134744097	protein_coding	Rnf40	exon	ENSMUSG00000030816	ProperStrand	4	1	-15.9901
chr11	79697522	79697589	LTR	MURVY-LTR	ERV1	chr11MURVY-LTR79697151	ProperStrand	2	chr11	94638542	94641240	protein_coding	Tmem92	utr3	ENSMUSG00000075610	NonProperStrand	24	1	-20.2563
chr14	26605897	26605932	LINE	Lx9	L1	chr14Lx926605718	ProperStrand	2	chr2	69861671	69861698	protein_coding	Ubr3	utr3	ENSMUSG00000044308	ProperStrand	27	1	-21.9988
chr1	125065086	125065176	LINE	L1_Mm	L1	chr1L1_Mm125065031	NonProperStrand	1	chr1	125065445	125065545	LTR	RLTR15	ERVK	chr1RLTR15125065428	NonProperStrand	1	1	-inf
chr13	112625888	112625988	Other	RMER1C	Other	chr13RMER1C112625782	NonProperStrand	1	chr13	112625646	112625736	SINE	ID_B1	B4	chr13ID_B1112625516	NonProperStrand	1	1	-inf
chr17	70963682	70963765	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr5	105756753	105756830	protein_coding	Gbp11	intron	ENSMUSG00000092021	NonProperStrand	63	1	-6.1113
chr13	90487324	90487424	LINE	L1_Mus3	L1	chr13L1_Mus390487194	NonProperStrand	2	chr13	90487596	90487686	LINE	Lx8	L1	chr13Lx890487574	NonProperStrand	1	1	-inf
chr14	36924725	36924815	LTR	MT2B	ERVL	chr14MT2B36924681	NonProperStrand	2	chr14	36924592	36924692	LTR	ORR1A3-int	MaLR	chr14ORR1A3-int36924054	NonProperStrand	2	2	-inf
chr12	11091994	11092011	LINE	Lx8	L1	chr12Lx811091971	ProperStrand	5	chr17	39846707	39846729	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr10	3895988	3896088	LINE	L1Md_F2	L1	chr10L1Md_F23891161	NonProperStrand	1	chr10	3896339	3896429	LINE	L1Md_F2	L1	chr10L1Md_F23896092	NonProperStrand	1	1	-inf
chr1	181930752	181956428	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	chr16	5073033	5073115	protein_coding	Ubn1	intron	ENSMUSG00000039473	ProperStrand	34	1	-9.1748
chr5	34282728	34282818	LINE	L1VL2	L1	chr5L1VL234282708	NonProperStrand	3	chr5	34282600	34282700	LTR	MurERV4_19-int	ERVK	chr5MurERV4_19-int34282480	NonProperStrand	3	3	-inf
chr17	39847251	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	120584602	120584677	lincRNA	Gm10390	exon	ENSMUSG00000072671	ProperStrand	5	1	-4.3348
chr11	6528074	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr14	52075283	52075344	protein_coding	Vmn2r89	intron	ENSMUSG00000070448	NonProperStrand	29	1	-14.5825
chr5	135385115	135385204	LINE	L1VL4	L1	chr5L1VL4135385037	ProperStrand	1	chr5	135385288	135385388	LINE	Lx2B	L1	chr5Lx2B135385226	ProperStrand	1	1	-inf
chr8	114985909	114985943	SINE	B3A	B2	chr8B3A114985917	NonProperStrand	1	chr18	67711853	67711897	protein_coding	Spire1	intron	ENSMUSG00000024533	ProperStrand	33	1	-inf
chr18	67918900	67918990	LTR	ORR1B2	MaLR	chr18ORR1B267918880	NonProperStrand	1	chr18	67918657	67918757	LTR	RMER2	ERV1	chr18RMER267918259	NonProperStrand	1	1	-inf
chr15	14610105	14610205	LINE	Lx8	L1	chr15Lx814610024	NonProperStrand	1	chr10	122566592	122566682	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-inf
chr2	178164914	178164939	LTR	RMER17A2	ERVK	chr2RMER17A2178164820	ProperStrand	1	chr15	25682943	25683018	protein_coding	Myo10	utr5	ENSMUSG00000022272	ProperStrand	120	1	-inf
chr17	12724601	12724629	LTR	MTD	MaLR	chr17MTD12724460	ProperStrand	1	chr19	47249356	47249439	SINE	B4A	B4	chr19B4A47249349	NonProperStrand	6	1	-inf
chrX	36796423	36796524	LINE	L1Md_F2	L1	chrXL1Md_F236792266	NonProperStrand	41	chr4	95877101	95877153	protein_coding	Cyp2j7-ps	intron	ENSMUSG00000081362	NonProperStrand	27	1	-14.4118
chr7	15866715	15866759	LINE	Lx3A	L1	chr7Lx3A15866492	ProperStrand	1	chr5	67395551	67395624	protein_coding	Limch1	intron	ENSMUSG00000037736	NonProperStrand	69	1	-inf
chr7	4795613	4795646	processed_transcript	Gm15525	.	ENSMUSG00000084815	NonProperStrand	48	chr12	109650180	109650258	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-8.2387
chr16	35981703	35981765	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr4	132309495	132309547	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	1	-7.8244
chr7	109520119	109520155	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr19	8973072	8977327	protein_coding	Ganab	intron	ENSMUSG00000071650	ProperStrand	138	1	-8.1748
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr7	28351000	28351070	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-7.1836
chr17	56056677	56056715	SINE	B2_Mm1t	B2	chr17B2_Mm1t56056608	ProperStrand	1	chr12	110692806	110693026	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	1	-inf
chr2	166123148	166123238	LTR	ORR1D1	MaLR	chr2ORR1D1166123119	ProperStrand	3	chr2	166122933	166123033	SINE	B4A	B4	chr2B4A166122832	ProperStrand	2	2	-inf
chr16	8776616	8776664	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr4	84933441	84933499	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	1	-7.3327
chr13	116480867	116480884	LINE	L1Md_F2	L1	chr13L1Md_F2116479239	NonProperStrand	1	chr5	38471767	38471876	protein_coding	Stx18	intron	ENSMUSG00000029125	ProperStrand	3	1	-inf
chr12	73551531	73551631	protein_coding	Lrrc9	intron	ENSMUSG00000021090	ProperStrand	9	chr1	3274559	3274649	protein_coding	Xkr4	intron	ENSMUSG00000051951	ProperStrand	10	1	-19.9660
chr3	10745448	10745548	LTR	RLTR1B-int	ERV1	chr3RLTR1B-int10745185	ProperStrand	1	chr3	10746033	10746123	LTR	RLTR1B-int	ERV1	chr3RLTR1B-int10745799	ProperStrand	1	1	-inf
chr11	96773687	96773777	protein_coding-noncoding	Cdk5rap3	utr3	ENSMUSG00000018669	ProperStrand	6	chr11	96773587	96773687	protein_coding	Cdk5rap3	exon	ENSMUSG00000018669	ProperStrand	11	6	-inf
chr10	91121198	91121288	LINE	Lx8	L1	chr10Lx891120964	ProperStrand	3	chr17	39846723	39846823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr8	107558070	107558130	LINE	L1_Mus2	L1	chr8L1_Mus2107553476	NonProperStrand	13	chr9	123462115	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr12	28652031	28652105	LINE	L1VL4	L1	chr12L1VL428651099	NonProperStrand	1	chr12	28649735	28649799	LINE	Lx2B	L1	chr12Lx2B28648344	NonProperStrand	2	1	-inf
chr1	55077941	55078028	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	35	chr2	37927648	37927696	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	1	-9.6646
chr17	39847174	39847205	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr15	82871248	82871331	SINE	B1_Mus2	Alu	chr15B1_Mus282871256	NonProperStrand	1	1	-inf
chr17	39847230	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	73721428	73775041	LTR	MTD	MaLR	chr2MTD73740277	ProperStrand	1	1	-inf
chr17	39847460	39847547	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	97008369	97008387	protein_coding	Tbkbp1	intron	ENSMUSG00000038517	ProperStrand	1	1	-inf
chr1	71599688	71600308	LTR	MTC	MaLR	chr1MTC71600075	NonProperStrand	3	chr6	142589519	142589537	protein_coding	Abcc9	intron	ENSMUSG00000030249	ProperStrand	6	1	-inf
chr5	110679660	110679694	protein_coding	Ankle2	intron	ENSMUSG00000029501	NonProperStrand	25	chr2	5379273	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.2637
chrX	12067282	12067382	LINE	Lx8	L1	chrXLx812067263	ProperStrand	1	chrX	12067412	12067502	LTR	MTEb	MaLR	chrXMTEb12067380	NonProperStrand	1	1	-inf
chr1	10718028	10718128	LINE	L1_Mur3	L1	chr1L1_Mur310717785	NonProperStrand	1	chr1	18128760	18128850	protein_coding	Crisp4	intron	ENSMUSG00000025774	NonProperStrand	2	1	-inf
chr6	122059532	122059632	LTR	RNLTR23	ERVK	chr6RNLTR23122059528	NonProperStrand	1	chr6	124150370	124150460	protein_coding	Vmn2r27	intron	ENSMUSG00000072778	NonProperStrand	2	1	-inf
chr1	119545404	119545489	LINE	L1VL2	L1	chr1L1VL2119544431	NonProperStrand	1	chr1	119546688	119546753	LTR	RLTR13D6	ERVK	chr1RLTR13D6119546620	NonProperStrand	2	1	-inf
chr17	57263200	57263224	Other	RMER1C	Other	chr17RMER1C57263166	NonProperStrand	2	chr17	57263071	57263183	SINE	B3A	B2	chr17B3A57263004	NonProperStrand	1	1	-inf
chr11	119743935	119744042	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	231	chr6	115807972	115808018	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-8.1447
chr2	32212195	32212237	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	193	chr2	69885402	69885485	protein_coding	Myo3b	intron	ENSMUSG00000042064	NonProperStrand	14	1	-12.6411
chr17	39846580	39846711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	18884907	18884923	LTR	MT2A	ERVL	chr7MT2A18884709	ProperStrand	1	1	-inf
chr5	146261153	146261215	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	106125545	106125619	protein_coding	Smarcd2	exon	ENSMUSG00000078619	NonProperStrand	5	1	-10.1672
chr13	79120789	79120879	Simple_repeat	(GA)n	Simple_repeat	chr13(GA)n79120813	ProperStrand	1	chr13	79120935	79121035	Simple_repeat	(GGAGAA)n	Simple_repeat	chr13(GGAGAA)n79120932	ProperStrand	1	1	-inf
chr6	94661156	94661256	LTR	MLT1A1	MaLR	chr6MLT1A194661122	ProperStrand	1	chr6	94661350	94661440	SINE	RSINE1	B4	chr6RSINE194661327	NonProperStrand	1	1	-inf
chr16	4850351	4850369	protein_coding	4930562C15Rik	exon	ENSMUSG00000022518	NonProperStrand	3	chr6	65830235	65830321	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-15.9198
chr8	84976324	84976402	DNA	BLACKJACK	AcHobo	chr8BLACKJACK84976130	ProperStrand	1	chr17	39847794	39847839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847605	39847636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	30321956	30322207	SINE	PB1D9	Alu	chr2PB1D930321890	NonProperStrand	2	1	-5.4040
chr19	4782326	4782448	SINE	B1_Mus2	Alu	chr19B1_Mus24782343	NonProperStrand	3	chr19	4782883	4782905	SINE	ID_B1	B4	chr19ID_B14782797	ProperStrand	2	2	-inf
chr11	117225997	117226097	SINE	B2_Mm1a	B2	chr11B2_Mm1a117225974	NonProperStrand	7	chr11	117225858	117225948	SINE	B3	B2	chr11B3117225790	NonProperStrand	8	7	-inf
chr7	126285720	126285820	DNA	MamRep137	TcMar?	chr7MamRep137126285683	NonProperStrand	1	chr17	39847081	39847171	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chrX	14066003	14066093	LINE	L1Md_F2	L1	chrXL1Md_F214065867	NonProperStrand	1	chrX	14066505	14066605	LINE	L1Md_Gf	L1	chrXL1Md_Gf14066353	ProperStrand	1	1	-inf
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	chr3	157983920	157984030	protein_coding	Lrrc7	intron	ENSMUSG00000028176	NonProperStrand	76	1	-12.2194
chr9	4344096	4344196	LINE	Lx8	L1	chr9Lx84343892	ProperStrand	1	chr9	4344299	4344389	LTR	ORR1B1	MaLR	chr9ORR1B14344286	ProperStrand	1	1	-inf
chr1	150619092	150619109	LINE	L1Md_F2	L1	chr1L1Md_F2150619055	NonProperStrand	1	chr17	39847624	39847649	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	1	-inf
chr3	153516255	153516301	protein_coding	Asb17	intron	ENSMUSG00000038997	NonProperStrand	12	chr2	32607982	32608078	protein_coding	Sh2d3c	intron	ENSMUSG00000059013	ProperStrand	23	2	-inf
chr12	17997138	17997238	DNA	MER46C	MER2_type	chr12MER46C17997097	NonProperStrand	1	chr12	17997388	17997478	SINE	B1_Mur3	Alu	chr12B1_Mur317997354	NonProperStrand	1	1	-inf
chr11	17221284	17221336	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr13	97190563	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.2979
chr11	109011692	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	56701073	56701517	protein_coding	Safb2	utr3	ENSMUSG00000042625	NonProperStrand	49	1	-6.5001
chr11	109011744	109011768	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	63331785	63335657	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-5.0258
chr15	77081399	77081537	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	chr9	22371675	22371694	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	134	1	-8.6419
chr8	22939065	22939098	protein_coding	Defb50	intron	ENSMUSG00000058568	ProperStrand	20	chr12	3410756	3410868	protein_coding	1110002L01Rik	intron	ENSMUSG00000071456	ProperStrand	49	1	-14.6669
chr11	77520594	77520628	protein_coding	Nufip2	intron	ENSMUSG00000037857	ProperStrand	47	chr7	3328947	3329029	protein_coding	Prkcc	intron	ENSMUSG00000078816	ProperStrand	22	1	-14.5562
chr5	33533466	33533543	LINE	L1Md_F2	L1	chr5L1Md_F233533141	ProperStrand	50	chr5	33534400	33534433	LINE	L3b	CR1	chr5L3b33534293	ProperStrand	6	1	-17.2698
chr14	75847915	75847958	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr3	108554336	108554393	protein_coding	Aknad1	intron	ENSMUSG00000049565	NonProperStrand	220	1	-10.8171
chr17	6102606	6102625	LTR	ORR1D2	MaLR	chr17ORR1D26102460	NonProperStrand	1	chr4	123291341	123291422	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	134	1	-inf
chr17	39847659	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	58937830	58937873	SINE	B1_Mur1	Alu	chr9B1_Mur158937730	NonProperStrand	1	1	-inf
chr1	168355465	168355555	LINE	L1M2	L1	chr1L1M2168355100	NonProperStrand	1	chr1	168355766	168355866	LINE	L1M2	L1	chr1L1M2168355712	NonProperStrand	1	1	-inf
chr17	39845505	39845595	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	113448603	113448703	protein_coding	Fmn1	intron	ENSMUSG00000044042	ProperStrand	31	1	-3.4073
chr14	101934557	101934573	protein_coding	Tbc1d4	intron	ENSMUSG00000033083	NonProperStrand	12	chr2	3410873	3410891	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	22	1	-17.4442
chr4	150289273	150289303	protein_coding	Tnfrsf9	intron	ENSMUSG00000028965	ProperStrand	158	chr7	120942166	120942246	protein_coding	Spon1	intron	ENSMUSG00000038156	ProperStrand	96	1	-9.1368
chr2	84470753	84470784	protein_coding	Ctnnd1	intron	ENSMUSG00000034101	ProperStrand	15	chr18	34946528	34946613	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	85	1	-14.1437
chr4	123579247	123580937	lincRNA	Gm17408	intron	ENSMUSG00000091927	ProperStrand	8	chr4	123579367	123580839	pseudogene	D130007C19Rik	.	ENSMUSG00000054304	ProperStrand	6	5	-inf
chr16	33489659	33489779	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.6122
chr17	39847551	39847612	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	146500010	146503298	LTR	RLTR20C	ERVK	chr3RLTR20C146502822	NonProperStrand	3	1	-4.3512
chr17	39847604	39847633	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	75623042	75623081	Simple_repeat	(CTA)n	Simple_repeat	chr5(CTA)n75623039	ProperStrand	1	1	-inf
chr2	18174413	18174503	protein_coding	Dnajc1	intron	ENSMUSG00000026740	NonProperStrand	79	chr6	84874320	84874420	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	2	-14.6639
chr5	76966990	76967077	protein_coding-noncoding	Exoc1	utr5	ENSMUSG00000036435	ProperStrand	23	chr19	32698622	32701529	protein_coding	Papss2	intron	ENSMUSG00000024899	NonProperStrand	5	1	-19.0181
chr7	134897177	134897265	protein_coding	Fbxl19	intron	ENSMUSG00000030811	ProperStrand	91	chr7	134917113	134917168	protein_coding	Orai3	exon	ENSMUSG00000043964	ProperStrand	40	1	-12.0038
chr11	32671481	32671571	LTR	MTD	MaLR	chr11MTD32671309	NonProperStrand	2	chr11	32671594	32671694	SINE	B1F2	Alu	chr11B1F232671603	ProperStrand	2	2	-inf
chr17	71361958	71365098	lincRNA	Gm16724	intron	ENSMUSG00000085916	NonProperStrand	31	chr8	116948620	116948645	protein_coding	Clec3a	intron	ENSMUSG00000008874	ProperStrand	27	1	-14.9804
chr17	39848460	39848589	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr15	98020460	98020480	protein_coding	Olfr288	intron	ENSMUSG00000075427	ProperStrand	5	1	-6.4438
chr17	39846353	39846408	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	134896881	134896897	SINE	B3	B2	chr6B3134896862	NonProperStrand	2	1	-5.3533
chr17	22364004	22364094	LINE	L1_Mur3	L1	chr17L1_Mur322363903	NonProperStrand	2	chr17	22364184	22364284	LTR	RLTR11A2	ERVK	chr17RLTR11A222364086	NonProperStrand	2	2	-inf
chr17	39847737	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	149485461	149485533	LTR	MTD	MaLR	chr4MTD149485227	ProperStrand	1	1	-inf
chr14	27494274	27494374	LTR	MTC-int	MaLR	chr14MTC-int27494201	NonProperStrand	2	chr14	27494460	27494550	LTR	RLTR31_Mm	ERVK	chr14RLTR31_Mm27494462	NonProperStrand	2	2	-inf
chr17	39847891	39847959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	94886830	94886900	protein_coding-noncoding	Pip5k1a	utr3	ENSMUSG00000028126	ProperStrand	6	2	-5.2646
chr2	85071861	85072109	LTR	RLTR20A	ERVK	chr2RLTR20A85071943	ProperStrand	2	chr9	123462049	123462133	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847028	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	82960183	82960199	SINE	ID4_	ID	chr11ID4_82960184	ProperStrand	1	1	-inf
chr2	76965828	76965845	protein_coding	Ccdc141	intron	ENSMUSG00000044033	ProperStrand	5	chr11	35867288	35867415	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-13.5466
chr9	123462119	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	140754869	140754938	protein_coding	Fbxo42	exon	ENSMUSG00000028920	NonProperStrand	2	1	-8.0983
chr2	38531179	38531262	processed_transcript	Gm13587	.	ENSMUSG00000087062	ProperStrand	12	chr9	123461801	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.0248
chr10	11188139	11189694	LTR	RLTR1B-int	ERV1	chr10RLTR1B-int11188257	ProperStrand	2	chr10	11189697	11191008	LTR	RLTR1B-int	ERV1	chr10RLTR1B-int11188441	ProperStrand	2	2	-inf
chr11	17221307	17221336	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	chr11	48800865	48800952	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-10.4749
chr5	146261139	146261177	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	155656360	155656418	protein_coding	Fam83c	intron	ENSMUSG00000074647	ProperStrand	4	1	-10.6768
chr17	39846674	39846709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	25533481	25533583	protein_coding	Cd177	intron	ENSMUSG00000052212	NonProperStrand	1	1	-inf
chr12	3757597	3757697	antisense	Gm20448	.	ENSMUSG00000092286	ProperStrand	1	chr12	3367077	3367167	protein_coding	Kif3c	exon	ENSMUSG00000020668	ProperStrand	6	1	-inf
chr16	96121713	96121798	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	ProperStrand	119	chr11	53399647	53399679	protein_coding	Kif3a	intron	ENSMUSG00000018395	ProperStrand	47	1	-11.1393
chr16	91458168	91458268	LINE	L1MEc	L1	chr16L1MEc91458168	ProperStrand	1	chr16	91458016	91458106	SINE	B1_Mur3	Alu	chr16B1_Mur391458029	ProperStrand	1	1	-inf
chr5	106688123	106688194	LTR	MTA_Mm	MaLR	chr5MTA_Mm106687799	NonProperStrand	1	chr2	23073867	23073917	protein_coding	4931423N10Rik	intron	ENSMUSG00000026774	ProperStrand	16	1	-inf
chr4	3973555	3973597	LINE	L1Md_T	L1	chr4L1Md_T3967325	ProperStrand	1	chr8	70508367	70508442	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-inf
chr12	111541394	111541494	LINE	Lx2B	L1	chr12Lx2B111541409	NonProperStrand	4	chr12	111541311	111541401	Simple_repeat	(GAGAA)n	Simple_repeat	chr12(GAGAA)n111541289	ProperStrand	2	2	-inf
chr4	44012879	44012969	LINE	Lx7	L1	chr4Lx744012152	ProperStrand	13	chr4	44013004	44019931	protein_coding	Clta	intron	ENSMUSG00000028478	ProperStrand	49	2	-inf
chr9	50887831	50887898	SINE	B4A	B4	chr9B4A50887639	NonProperStrand	1	chr9	50889374	50889421	protein_coding	4833427G06Rik	utr3	ENSMUSG00000032057	NonProperStrand	6	1	-inf
chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr16	17354890	17356123	protein_coding	Pi4ka	intron	ENSMUSG00000041720	ProperStrand	50	1	-9.7938
chr6	36758682	36758782	protein_coding	Ptn	intron	ENSMUSG00000029838	NonProperStrand	5	chr6	36469593	36469683	protein_coding	Chrm2	intron	ENSMUSG00000045613	NonProperStrand	5	1	-inf
chr14	122921466	122921511	LINE	L1Md_T	L1	chr14L1Md_T122920199	NonProperStrand	4	chr14	122924304	122924411	LINE	L1Md_T	L1	chr14L1Md_T122923961	NonProperStrand	3	3	-inf
chr13	107020054	107020143	LINE	L1Md_F2	L1	chr13L1Md_F2107014857	ProperStrand	3	chr17	39845134	39845192	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	1	-8.2800
chr3	85983451	85983578	SINE	B4	B4	chr3B485983297	NonProperStrand	1	chr11	69638518	69638539	protein_coding	Nlgn2	utr3	ENSMUSG00000051790	ProperStrand	4	1	-inf
chr12	77605934	77606024	SINE	B1_Mus2	Alu	chr12B1_Mus277605935	ProperStrand	1	chr12	77606117	77606217	SINE	B2_Mm2	B2	chr12B2_Mm277606130	ProperStrand	1	1	-inf
chr5	129724953	129724970	LINE	L1M4	L1	chr5L1M4129724907	ProperStrand	1	chr17	39846471	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	47213764	47213854	LINE	L1_Mus4	L1	chr2L1_Mus447213581	ProperStrand	1	chr2	47213290	47213390	LTR	MTD	MaLR	chr2MTD47213049	ProperStrand	1	1	-inf
chr2	130590478	130590495	protein_coding	4930402H24Rik	intron	ENSMUSG00000027309	ProperStrand	117	chr8	124234285	124234352	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-5.6171
chr11	67994188	67994234	protein_coding	Stx8	intron	ENSMUSG00000020903	ProperStrand	40	chr17	12180607	12180709	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	1	-10.5597
chr5	115245958	115246895	protein_coding	Ankrd13a	intron	ENSMUSG00000041870	NonProperStrand	64	chr11	88554302	88554374	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-6.1356
chr12	31812926	31813026	LINE	L1MB2	L1	chr12L1MB231812835	ProperStrand	1	chr12	31812555	31812645	LINE	L1_Mur3	L1	chr12L1_Mur331812560	ProperStrand	1	1	-inf
chr17	39847128	39847338	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	109012007	109012050	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	8	-8.8172
chr19	35521228	35521328	LTR	MYSERV-int	ERVK	chr19MYSERV-int35520743	NonProperStrand	1	chr19	35521389	35521479	LTR	RMER6B	ERVK	chr19RMER6B35521328	ProperStrand	1	1	-inf
chr14	51218598	51218686	LINE	L1Md_T	L1	chr14L1Md_T51215817	NonProperStrand	1	chr7	97066756	97066856	protein_coding	l7Rn6	utr3	ENSMUSG00000062797	ProperStrand	1	1	-inf
chr14	27310399	27310454	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr10	77901358	77901375	protein_coding	Pdxk	utr3	ENSMUSG00000032788	NonProperStrand	1	1	-inf
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	153651016	153651102	SINE	B1_Mm	Alu	chr2B1_Mm153651010	NonProperStrand	1	1	-inf
chr8	41395788	41395807	protein_coding	Efha2	intron	ENSMUSG00000039478	NonProperStrand	7	chr7	28352246	28352393	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	1	-15.7510
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	74521408	74521480	LTR	IAPEy-int	ERVK	chr18IAPEy-int74520610	ProperStrand	1	1	-inf
chr1	152002606	152002683	LTR	MTC	MaLR	chr1MTC152002348	ProperStrand	1	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-inf
chr13	49587669	49587759	protein_coding	Cenpp	intron	ENSMUSG00000021391	NonProperStrand	47	chr1	84865330	84865430	protein_coding	Fbxo36	intron	ENSMUSG00000073633	NonProperStrand	31	1	-13.8529
chr17	86073084	86073174	LINE	L1M4	L1	chr17L1M486073073	NonProperStrand	1	chr17	86073241	86073341	LTR	MTC	MaLR	chr17MTC86073229	NonProperStrand	1	1	-inf
chr17	6308389	6308489	LTR	ORR1E	MaLR	chr17ORR1E6308320	ProperStrand	6	chr17	6438261	6438351	lincRNA	Gm17692	intron	ENSMUSG00000091795	ProperStrand	10	6	-inf
chr12	87266843	87266899	protein_coding	Ttll5	intron	ENSMUSG00000012609	ProperStrand	42	chr4	119100057	119100113	protein_coding	Zmynd12	intron	ENSMUSG00000070806	NonProperStrand	9	1	-16.6695
chr1	150395515	150395567	LINE	Lx3A	L1	chr1Lx3A150395452	NonProperStrand	4	chr13	41623658	41623700	SINE	PB1D7	Alu	chr13PB1D741623646	NonProperStrand	4	4	-inf
chr14	19751276	19751375	LINE	L1_Mus1	L1	chr14L1_Mus119749429	ProperStrand	53	chr17	35988696	35988734	protein_coding	Mdc1	intron	ENSMUSG00000061607	ProperStrand	27	1	-13.8876
chr13	33822928	33823028	LINE	L1Md_F	L1	chr13L1Md_F33822931	NonProperStrand	1	chr13	33822743	33822833	LINE	L1_Mm	L1	chr13L1_Mm33822743	ProperStrand	1	1	-inf
chr6	38608342	38608375	LINE	L1MA7	L1	chr6L1MA738608351	NonProperStrand	1	chr16	35601211	35601323	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	1	-inf
chr5	92751586	92751623	protein_coding	Cxcl9	utr3	ENSMUSG00000029417	NonProperStrand	1	chr9	72662538	72662604	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	1	-inf
chr5	30060681	30060781	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	chr15	55251133	55251223	protein_coding	Col14a1	intron	ENSMUSG00000022371	NonProperStrand	9	1	-17.5044
chr3	95037141	95037269	protein_coding	Cdc42se1	intron	ENSMUSG00000046722	NonProperStrand	26	chr3	95041828	95041861	protein_coding	Gm128	intron	ENSMUSG00000068860	ProperStrand	1	1	-inf
chr3	65386195	65386285	DNA	Charlie1a	MER1_type	chr3Charlie1a65386211	NonProperStrand	1	chr3	65387369	65387416	SINE	MIR	MIR	chr3MIR65387275	NonProperStrand	1	1	-inf
chr13	48927082	48927137	protein_coding	Phf2	intron	ENSMUSG00000038025	ProperStrand	92	chr9	78479305	78479349	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-6.6583
chr14	110990929	110991029	LINE	L1_Mus4	L1	chr14L1_Mus4110990734	ProperStrand	1	chr14	110991248	110991338	LINE	L1_Mus4	L1	chr14L1_Mus4110991221	NonProperStrand	1	1	-inf
chr10	61121687	61121787	protein_coding	Ppa1	intron	ENSMUSG00000020089	ProperStrand	2	chr15	73387540	73387630	protein_coding	Dennd3	intron	ENSMUSG00000036661	NonProperStrand	30	1	-21.6628
chr11	88678102	88678160	SINE	B2_Mm2	B2	chr11B2_Mm288677967	NonProperStrand	1	chr11	88676415	88676486	SINE	MIRm	MIR	chr11MIRm88676368	ProperStrand	1	1	-inf
chr1	51879517	51879572	protein_coding	Myo1b	intron	ENSMUSG00000018417	ProperStrand	53	chr11	33160347	33160831	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-7.6904
chr4	133338575	133338655	SINE	B2_Mm1t	B2	chr4B2_Mm1t133338539	NonProperStrand	2	chr6	49236487	49236557	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-16.7747
chr9	94284494	94284528	LINE	L1Md_F3	L1	chr9L1Md_F394284487	ProperStrand	1	chr17	39847868	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	115284518	115284608	LTR	MYSERV16_I-int	ERVK	chr5MYSERV16_I-int115283897	NonProperStrand	4	chr17	39843409	39843509	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-7.9732
chr3	110403915	110403934	Low_complexity	AT_rich	Low_complexity	chr3AT_rich110403908	ProperStrand	1	chr10	59578051	59578145	protein_coding	Spock2	intron	ENSMUSG00000058297	NonProperStrand	19	1	-inf
chr11	23863613	23863668	LTR	MERVL-int	ERVL	chr11MERVL-int23863352	NonProperStrand	2	chr18	84302998	84303040	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	1	-17.0442
chr17	39848099	39848229	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	7589821	7589845	protein_coding	Glod5	intron	ENSMUSG00000031163	ProperStrand	19	2	-5.9632
chr13	24474907	24474931	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	chr1	64600736	64600854	protein_coding	Creb1	intron	ENSMUSG00000025958	ProperStrand	13	1	-17.3134
chr5	99985663	99985763	protein_coding-noncoding	A930011G23Rik	utr3	ENSMUSG00000089809	NonProperStrand	1	chr5	99985533	99985623	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	NonProperStrand	55	1	-inf
chr2	3912840	3912940	LTR	ORR1A2-int	MaLR	chr2ORR1A2-int3912682	NonProperStrand	2	chr2	3912480	3912570	LTR	ORR1A2	MaLR	chr2ORR1A23912364	NonProperStrand	1	1	-inf
chr1	34703534	34703583	LTR	MERVL-int	ERVL	chr1MERVL-int34702114	NonProperStrand	1	chr1	34709114	34709162	SINE	ID_B1	B4	chr1ID_B134709046	NonProperStrand	1	1	-inf
chrX	42079299	42079368	LINE	Lx8	L1	chrXLx842079099	NonProperStrand	1	chr9	118558522	118558577	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-inf
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr19	32259546	32259664	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-11.0974
chr13	33876236	33876301	LINE	L1Md_F2	L1	chr13L1Md_F233875960	ProperStrand	1	chr5	104015829	104015897	protein_coding	Ptpn13	intron	ENSMUSG00000034573	NonProperStrand	46	1	-inf
chr7	80199929	80199982	LINE	L1Md_T	L1	chr7L1Md_T80199077	ProperStrand	5	chr7	80200157	80200185	LTR	MLT1B	MaLR	chr7MLT1B80200149	NonProperStrand	1	1	-inf
chr7	105746355	105746414	protein_coding	2210018M11Rik	intron	ENSMUSG00000035401	ProperStrand	27	chr14	27402341	27402357	protein_coding	Fam116a	intron	ENSMUSG00000040818	NonProperStrand	62	1	-13.5738
chr5	114852014	114852038	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr2	129318072	129318103	protein_coding	F830045P16Rik	intron	ENSMUSG00000043727	ProperStrand	3	1	-15.6721
chr4	46375074	46375164	LINE	L1MD2	L1	chr4L1MD246375092	NonProperStrand	7	chr4	46374930	46375031	SINE	B3A	B2	chr4B3A46374864	NonProperStrand	7	7	-inf
chr10	62580497	62580566	protein_coding	Mypn	intron	ENSMUSG00000020067	ProperStrand	87	chr14	52160808	52160867	protein_coding	Gm7247	intron	ENSMUSG00000068399	NonProperStrand	119	1	-9.9008
chr1	77993404	77993422	LINE	L1Md_F2	L1	chr1L1Md_F277993274	ProperStrand	1	chr17	39847611	39847719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	65546332	65546422	LINE	L1_Mus1	L1	chr12L1_Mus165545887	ProperStrand	1	chr12	65546616	65546716	SINE	B3A	B2	chr12B3A65546621	ProperStrand	1	1	-inf
chrX	105366580	105366680	LINE	Lx6	L1	chrXLx6105363201	NonProperStrand	1	chrX	105366681	105366773	LINE	Lx6	L1	chrXLx6105366604	NonProperStrand	1	1	-inf
chr17	53004550	53004640	protein_coding	Kcnh8	intron	ENSMUSG00000035580	ProperStrand	6	chr17	27928037	27928137	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	NonProperStrand	106	1	-15.6503
chr17	39846394	39846455	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	26272130	26272201	SINE	PB1D10	Alu	chr17PB1D1026272132	ProperStrand	1	1	-inf
chr6	85620518	85620606	protein_coding	Alms1	intron	ENSMUSG00000063810	ProperStrand	47	chr19	8977405	8977427	protein_coding	Ganab	intron	ENSMUSG00000071650	ProperStrand	138	1	-10.8423
chr17	47761432	47761532	protein_coding	Gm20517	intron	ENSMUSG00000023984	ProperStrand	54	chr14	20385440	20385851	protein_coding	Gm2237	intron	ENSMUSG00000079354	ProperStrand	13	1	-15.3644
chr17	39847531	39847574	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	10899204	10899221	LTR	MTD	MaLR	chr4MTD10899172	NonProperStrand	4	1	-3.7035
chr6	14539716	14539816	LINE	Lx3C	L1	chr6Lx3C14539292	NonProperStrand	1	chr6	14539819	14539909	LINE	Lx7	L1	chr6Lx714539827	NonProperStrand	1	1	-inf
chr9	20894135	20894172	protein_coding	Raver1	intron	ENSMUSG00000010205	ProperStrand	7	chr9	123461970	123462017	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr4	57897233	57897305	protein_coding	Akap2	intron	ENSMUSG00000038729	ProperStrand	126	chr11	6568418	6568469	protein_coding	Ramp3	intron	ENSMUSG00000041046	ProperStrand	18	1	-12.9775
chr4	41796150	41796250	antisense	Gm13307	.	ENSMUSG00000085730	ProperStrand	1	chr4	42830174	42830264	protein_coding	Gm12394	intron	ENSMUSG00000078722	ProperStrand	1	1	-inf
chr2	179998238	179998338	protein_coding	Cables2	intron	ENSMUSG00000038990	NonProperStrand	1	chr17	33830374	33830464	protein_coding	March2	intron	ENSMUSG00000079557	NonProperStrand	33	1	-inf
chrX	100355860	100355927	LINE	L1_Rod	L1	chrXL1_Rod100355835	NonProperStrand	1	chr2	117152992	117153050	protein_coding	Rasgrp1	intron	ENSMUSG00000027347	NonProperStrand	18	1	-inf
chr6	127802586	127802611	SINE	B2_Mm2	B2	chr6B2_Mm2127802461	ProperStrand	1	chr15	103166480	103166550	protein_coding	Zfp385a	intron	ENSMUSG00000000552	ProperStrand	9	1	-inf
chr12	71196386	71196491	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	chr9	110281293	110281334	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-7.3730
chr13	44869602	44869701	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr5	3588304	3588394	protein_coding	C030048B08Rik	intron	ENSMUSG00000040302	ProperStrand	3	1	-10.7726
chr4	129225057	129225157	LTR	RLTR19B	ERVK	chr4RLTR19B129224927	NonProperStrand	1	chr4	129225208	129225298	SINE	B1_Mus1	Alu	chr4B1_Mus1129225146	ProperStrand	1	1	-inf
chr11	106782038	106782138	Low_complexity	G-rich	Low_complexity	chr11G-rich106782067	NonProperStrand	1	chr11	106781355	106781445	protein_coding	Smurf2	intron	ENSMUSG00000018363	ProperStrand	51	1	-inf
chr17	39848099	39848161	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	180621465	180621507	lincRNA	Gm14342	intron	ENSMUSG00000086166	NonProperStrand	22	1	-3.1941
chr10	20173218	20235012	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr9	110281288	110281347	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	2	-7.2319
chr6	91013506	91013545	protein_coding	Nup210	intron	ENSMUSG00000030091	ProperStrand	121	chr17	23609894	23609963	protein_coding	Vmn2r117	intron	ENSMUSG00000091407	NonProperStrand	24	3	-inf
chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	21520479	21520598	lincRNA	6230400D17Rik	intron	ENSMUSG00000086351	NonProperStrand	5	1	-3.2379
chr17	39843364	39843482	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr6	38508868	38508887	protein_coding	Luc7l2	intron	ENSMUSG00000029823	ProperStrand	46	1	-3.0334
chr2	129209145	129209905	SINE	B2_Mm2	B2	chr2B2_Mm2129209087	ProperStrand	1	chr2	129199555	129199581	antisense	Gm14047	.	ENSMUSG00000074805	ProperStrand	18	1	-inf
chr11	65098181	65098217	lincRNA	Gm12295	intron	ENSMUSG00000085162	ProperStrand	128	chr4	130359570	130359688	protein_coding	Sdc3	intron	ENSMUSG00000025743	NonProperStrand	10	1	-14.1700
chr10	75729241	75729300	protein_coding	Dip2a	intron	ENSMUSG00000020231	ProperStrand	98	chr16	87486403	87486453	protein_coding	Cct8	intron	ENSMUSG00000025613	ProperStrand	46	1	-11.5723
chr2	132252895	132252957	lincRNA	4921508D12Rik	intron	ENSMUSG00000027345	NonProperStrand	28	chr13	23621986	23622033	lincRNA	Gm11335	intron	ENSMUSG00000085016	ProperStrand	56	1	-13.7047
chr17	39848507	39848600	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr19	17401293	17401325	protein_coding	Gcnt1	utr3	ENSMUSG00000038843	NonProperStrand	9	2	-8.7081
chr1	155187440	155187508	LINE	L1_Mur3	L1	chr1L1_Mur3155187433	NonProperStrand	2	chr17	39847538	39847579	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr14	32191852	32191952	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	39	chr4	126052824	126052914	protein_coding	Eif2c3	intron	ENSMUSG00000028842	NonProperStrand	31	1	-14.2301
chr16	18065682	18065704	protein_coding	Dgcr6	intron	ENSMUSG00000003531	ProperStrand	10	chr9	123462040	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr17	39842997	39843050	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr16	13879561	13881949	protein_coding	Pdxdc1	intron	ENSMUSG00000022680	ProperStrand	20	2	-12.1847
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr8	3946420	3946544	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	1	-10.0129
chr11	5412776	5412792	LTR	MER31B	ERV1	chr11MER31B5412397	ProperStrand	1	chr2	91763168	91763206	protein_coding	Chrm4	intron	ENSMUSG00000040495	ProperStrand	12	1	-inf
chr18	84900913	84901013	protein_coding	Fam69c	intron	ENSMUSG00000047992	ProperStrand	3	chr19	31326212	31326301	protein_coding	Prkg1	intron	ENSMUSG00000052920	NonProperStrand	44	1	-19.0086
chr11	116653793	116653811	LTR	IAPLTR1_Mm	ERVK	chr11IAPLTR1_Mm116653650	NonProperStrand	1	chr5	146260993	146261021	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr2	153517539	153517629	LTR	MTA_Mm-int	MaLR	chr2MTA_Mm-int153517413	ProperStrand	1	chr2	153525124	153525224	pseudogene	Gm14490	.	ENSMUSG00000082079	ProperStrand	1	1	-inf
chr17	66448887	66448987	protein_coding	Ndufv2	intron	ENSMUSG00000024099	ProperStrand	63	chr18	24968370	24968460	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	1	-8.9489
chr14	66922294	66922402	protein_coding	Trim35	intron	ENSMUSG00000022043	ProperStrand	16	chr13	97190541	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chrX	12801863	12801895	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr17	70963685	70963792	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-6.4905
chr2	166831379	166831489	LINE	L1_Mus1	L1	chr2L1_Mus1166831100	NonProperStrand	1	chr2	166832980	166833014	pseudogene	Gm11470	.	ENSMUSG00000082665	NonProperStrand	3	1	-inf
chr17	56822832	56822874	protein_coding	Ranbp3	intron	ENSMUSG00000002372	NonProperStrand	37	chr2	26917494	26918939	protein_coding	Tmem8c	intron	ENSMUSG00000009214	NonProperStrand	8	1	-17.1774
chr8	107418431	107418704	LINE	L1Md_T	L1	chr8L1Md_T107417430	ProperStrand	1	chr9	123461965	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	88291258	88291358	LINE	L1MCa	L1	chr15L1MCa88291085	NonProperStrand	1	chr15	88291417	88291507	LTR	MTD	MaLR	chr15MTD88291413	ProperStrand	1	1	-inf
chr15	70946033	70946133	LTR	ORR1D1	MaLR	chr15ORR1D170946033	ProperStrand	1	chr15	70946315	70946405	Simple_repeat	(GA)n	Simple_repeat	chr15(GA)n70946230	NonProperStrand	1	1	-inf
chr6	149175011	149175142	LTR	MERVL-int	ERVL	chr6MERVL-int149174545	ProperStrand	3	chr4	53159765	53159781	protein_coding	Abca1	intron	ENSMUSG00000015243	NonProperStrand	5	1	-inf
chr13	74357192	74357322	protein_coding-noncoding	Ahrr	utr3	ENSMUSG00000021575	NonProperStrand	3	chr2	41296115	41296132	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-18.4369
chr17	72035089	72035179	protein_coding	Fam179a	intron	ENSMUSG00000045761	NonProperStrand	1	chr17	72039901	72040001	protein_coding	Fam179a	exon	ENSMUSG00000045761	ProperStrand	3	1	-inf
chr6	118463505	118463595	protein_coding	Ankrd26	intron	ENSMUSG00000007827	NonProperStrand	3	chr4	138821235	138821335	protein_coding	Capzb	intron	ENSMUSG00000028745	NonProperStrand	22	1	-21.7474
chr10	4111837	4111980	LINE	L1Md_F2	L1	chr10L1Md_F24111137	ProperStrand	4	chr17	39847477	39847856	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-6.7714
chr17	39847347	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	23800267	23800398	pseudogene	Gm6838	.	ENSMUSG00000092380	ProperStrand	3	1	-4.3512
chr11	109011744	109011780	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	30905427	30905526	protein_coding	Prkci	intron	ENSMUSG00000037643	NonProperStrand	25	1	-7.8478
chr17	30752159	30752899	LTR	ORR1A4	MaLR	chr17ORR1A430752641	ProperStrand	12	chr17	30751586	30752133	SINE	B1_Mus1	Alu	chr17B1_Mus130752068	NonProperStrand	1	1	-inf
chr17	39846949	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	49435255	49439513	SINE	B4	B4	chr17B449439315	ProperStrand	1	1	-inf
chr17	43026055	43026089	LTR	LTR33A_	ERVL	chr17LTR33A_43026039	ProperStrand	1	chr17	43026292	43026325	SINE	ID_B1	B4	chr17ID_B143026217	ProperStrand	1	1	-inf
chr17	39847349	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	19	-4.6234
chr1	55163015	55163087	LTR	LTRIS_Mus	ERV1	chr1LTRIS_Mus55162619	ProperStrand	1	chr1	55157359	55157404	SINE	B1_Mm	Alu	chr1B1_Mm55157273	NonProperStrand	1	1	-inf
chr10	70167020	70167072	LTR	MTC-int	MaLR	chr10MTC-int70166882	ProperStrand	4	chr5	114851985	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	2	-inf
chr2	22744852	22744922	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	63958137	63958181	LTR	MER74A	ERVL	chr5MER74A63958103	ProperStrand	1	1	-inf
chr13	29950489	29950595	SINE	B1F2	Alu	chr13B1F229950506	ProperStrand	15	chr13	29950375	29950494	Simple_repeat	(GA)n	Simple_repeat	chr13(GA)n29950388	NonProperStrand	6	6	-inf
chr11	61523359	61523451	protein_coding	Slc5a10	intron	ENSMUSG00000042371	ProperStrand	108	chr7	133084981	133085081	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	4	-13.1054
chr8	12952386	12952497	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	chr6	47788156	47788181	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	1	-9.3933
chr14	31414239	31414329	protein_coding-noncoding	Prkcd	utr3	ENSMUSG00000021948	NonProperStrand	1	chr14	31414556	31414656	protein_coding	Prkcd	intron	ENSMUSG00000021948	NonProperStrand	3	1	-inf
chr17	39847228	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	4176703	4177504	lincRNA	Gm11959	intron	ENSMUSG00000085559	ProperStrand	18	2	-3.5608
chr9	123462078	123462150	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	117717996	117718078	protein_coding	Taok3	intron	ENSMUSG00000061288	ProperStrand	16	1	-3.4729
chr17	4082172	4082262	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr19	13999979	14000079	LTR	RLTR6-int	ERV1	chr19RLTR6-int13999017	NonProperStrand	1	1	-inf
chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	96938394	96938508	SINE	B1_Mus2	Alu	chr11B1_Mus296938363	ProperStrand	2	2	-inf
chr13	114038666	114038696	LTR	MLT1D	MaLR	chr13MLT1D114038355	ProperStrand	2	chr11	35915543	35915598	protein_coding	Odz2	intron	ENSMUSG00000049336	ProperStrand	370	1	-15.8503
chr7	54788803	54788893	LINE	Lx	L1	chr7Lx54788735	NonProperStrand	1	chr7	54788535	54788635	LTR	RMER5	ERV1	chr7RMER554788174	NonProperStrand	1	1	-inf
chr1	72279107	72279207	SINE	B1_Mm	Alu	chr1B1_Mm72279059	ProperStrand	1	chr1	72279306	72279396	SINE	B3A	B2	chr1B3A72279313	ProperStrand	1	1	-inf
chr2	36552882	36552982	LINE	L1_Mur2	L1	chr2L1_Mur236552811	NonProperStrand	1	chr2	36552605	36552695	LTR	RLTR11A	ERVK	chr2RLTR11A36552312	NonProperStrand	1	1	-inf
chr1	177236985	177237062	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	85	chr5	121205011	121205078	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	174	1	-9.1878
chr4	133388825	133388915	SINE	B2_Mm2	B2	chr4B2_Mm2133388722	ProperStrand	1	chr4	133388940	133389041	SINE	ID_B1	B4	chr4ID_B1133388935	NonProperStrand	1	1	-inf
chrX	74272483	74272585	SINE	B3	B2	chrXB374272477	ProperStrand	15	chr1	59543706	59543723	protein_coding	Fzd7	utr3	ENSMUSG00000041075	NonProperStrand	8	1	-19.0524
chr1	71591669	71591770	LTR	ORR1C2	MaLR	chr1ORR1C271591497	NonProperStrand	1	chr13	97190562	97190612	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr19	38488704	38488804	LINE	Lx6	L1	chr19Lx638488687	ProperStrand	4	chr19	38488584	38488674	LTR	RLTR9E	ERVK	chr19RLTR9E38488280	NonProperStrand	4	4	-inf
chr7	3515452	3515542	SINE	B1_Mur4	Alu	chr7B1_Mur43515416	ProperStrand	2	chr7	3515293	3515393	SINE	B3A	B2	chr7B3A3515304	NonProperStrand	2	2	-inf
chr14	89898858	89898948	LINE	L1_Mm	L1	chr14L1_Mm89898870	ProperStrand	4	chr4	123283241	123283341	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	134	3	-inf
chr17	39847330	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	17987798	17987838	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	93	13	-5.6249
chr12	104814259	104814380	protein_coding	Ppp4r4	intron	ENSMUSG00000021209	NonProperStrand	63	chr8	70245235	70245274	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	1	-8.0853
chr7	126383168	126383209	LINE	L1MC5	L1	chr7L1MC5126382940	NonProperStrand	1	chr4	119112637	119112732	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	1	-inf
chr5	101401680	101401780	LINE	L1M2	L1	chr5L1M2101401639	NonProperStrand	1	chr9	26905800	26905890	protein_coding	Jam3	utr3	ENSMUSG00000031990	NonProperStrand	6	1	-inf
chr9	118674951	118675011	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr11	20141129	20141153	protein_coding	Cep68	intron	ENSMUSG00000044066	NonProperStrand	1	1	-inf
chr3	110250818	110250908	LINE	L1Md_F2	L1	chr3L1Md_F2110245887	ProperStrand	5	chr3	110251007	110251107	LINE	L1Md_F2	L1	chr3L1Md_F2110250953	ProperStrand	6	5	-inf
chrX	150565081	150565154	LINE	Lx7	L1	chrXLx7150564453	ProperStrand	6	chr15	76503534	76503595	protein_coding	Ppp1r16a	intron	ENSMUSG00000033819	NonProperStrand	29	1	-18.2046
chr3	41564161	41564209	LINE	L1Md_F2	L1	chr3L1Md_F241563763	NonProperStrand	33	chr3	41566174	41566271	LTR	MER70A	ERVL	chr3MER70A41565974	NonProperStrand	3	1	-19.4825
chr8	107591496	107591596	LTR	RMER17C	ERVK	chr8RMER17C107591363	NonProperStrand	1	chr8	107591618	107591708	SINE	B1_Mur4	Alu	chr8B1_Mur4107591615	ProperStrand	2	1	-inf
chr11	93949896	93949931	protein_coding	Spag9	intron	ENSMUSG00000020859	NonProperStrand	74	chr6	47788068	47788130	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	1	-12.3695
chr12	110359609	110359709	SINE	B1_Mur1	Alu	chr12B1_Mur1110359559	ProperStrand	4	chr12	110359703	110359793	SINE	B4A	B4	chr12B4A110359714	ProperStrand	4	4	-inf
chr10	67131459	67131506	LTR	MLT1C	MaLR	chr10MLT1C67131295	NonProperStrand	2	chr10	67130932	67130969	LTR	MLT1F1	MaLR	chr10MLT1F167130826	ProperStrand	1	1	-inf
chr7	130762931	130762970	LINE	L1_Mur3	L1	chr7L1_Mur3130762928	NonProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr15	72937065	72941889	protein_coding	Eif2c2	utr3	ENSMUSG00000036698	ProperStrand	71	chr15	72925621	72937024	protein_coding	Eif2c2	utr3	ENSMUSG00000093631	ProperStrand	2	2	-inf
chr2	168981618	168981718	DNA	Tigger7	MER2_type	chr2Tigger7168981531	NonProperStrand	1	chr2	168983592	168983682	SINE	RSINE1	B4	chr2RSINE1168983566	ProperStrand	1	1	-inf
chr18	57546602	57546692	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	19	chr3	113140541	113140641	protein_coding	Amy2a3	intron	ENSMUSG00000074266	ProperStrand	4	1	-21.2052
chr18	16485130	16485148	LINE	Lx2	L1	chr18Lx216482397	NonProperStrand	2	chr19	16244346	16244393	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	181	1	-17.2783
chr16	19550971	19551033	LTR	RLTR10A	ERVK	chr16RLTR10A19550749	ProperStrand	1	chr16	19364359	19364411	SINE	PB1D10	Alu	chr16PB1D1019364305	NonProperStrand	1	1	-inf
chr8	41337858	41337948	LINE	L1MCa	L1	chr8L1MCa41337860	NonProperStrand	2	chr8	41337730	41337830	LTR	ORR1D1	MaLR	chr8ORR1D141337489	ProperStrand	2	2	-inf
chr1	100180178	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr2	22744838	22744918	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-5.4782
chr14	79407458	79407548	protein_coding	1300010F03Rik	intron	ENSMUSG00000058997	ProperStrand	49	chr13	78063561	78063661	protein_coding	Fam172a	intron	ENSMUSG00000064138	ProperStrand	68	1	-12.1793
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr12	78350926	78351012	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-4.2192
chr2	22744824	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr5	144119008	144119087	protein_coding	Grid2ip	utr5	ENSMUSG00000010825	ProperStrand	61	1	-6.7756
chr6	128104704	128104780	LTR	MTD	MaLR	chr6MTD128104513	ProperStrand	1	chr6	128106202	128106268	SINE	B4A	B4	chr6B4A128106101	NonProperStrand	1	1	-inf
chr10	27427888	27427984	LINE	L1_Mus2	L1	chr10L1_Mus227426860	NonProperStrand	1	chr17	39842996	39843047	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	1	-inf
chr10	18568456	18568491	protein_coding	Perp	intron	ENSMUSG00000019851	ProperStrand	18	chr2	69703451	69703479	protein_coding	Ssb	intron	ENSMUSG00000068882	NonProperStrand	8	1	-18.4426
chr2	114668766	114668856	LINE	L1M5	L1	chr2L1M5114668488	NonProperStrand	1	chr2	114669051	114669151	LTR	MTE2b	MaLR	chr2MTE2b114669033	ProperStrand	1	1	-inf
chr17	30397202	30397220	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	chr15	71644439	71644467	protein_coding	Col22a1	intron	ENSMUSG00000079022	NonProperStrand	6	1	-11.9881
chr11	8090886	8090986	LTR	RLTR20B3	ERVK	chr11RLTR20B38090575	NonProperStrand	1	chr11	9341046	9341136	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	1	-inf
chr8	107821571	107821671	protein_coding	E2f4	utr5	ENSMUSG00000014859	NonProperStrand	1	chr8	81898345	81898435	protein_coding	Smad1	intron	ENSMUSG00000031681	NonProperStrand	1	1	-inf
chr15	79916193	79916255	SINE	B2_Mm2	B2	chr15B2_Mm279916204	NonProperStrand	7	chr8	122529322	122529374	protein_coding	Crispld2	intron	ENSMUSG00000031825	NonProperStrand	122	2	-21.6048
chr13	21381502	21381548	protein_coding	Gpx5	intron	ENSMUSG00000004344	ProperStrand	3	chr13	3565611	3565692	protein_coding	BC016423	utr3	ENSMUSG00000033799	NonProperStrand	13	1	-inf
chr11	75605884	75605929	protein_coding	Doc2b	intron	ENSMUSG00000020848	NonProperStrand	28	chr4	33502542	33502559	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	100	1	-12.5380
chr14	56694165	56694188	LTR	ERVL-int	ERVL	chr14ERVL-int56694085	NonProperStrand	3	chr17	39846580	39846713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr8	78554788	78554855	LINE	L1MA8	L1	chr8L1MA878554778	NonProperStrand	1	chr14	65865184	65865236	protein_coding	Fzd3	intron	ENSMUSG00000007989	NonProperStrand	34	1	-inf
chr15	74799450	74799797	LTR	RMER13A	ERVK	chr15RMER13A74799184	ProperStrand	2	chr12	41241405	41241488	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	2	-inf
chr13	63543967	63544055	protein_coding	Fancc	intron	ENSMUSG00000021461	ProperStrand	182	chr18	12972126	12972149	protein_coding	Osbpl1a	intron	ENSMUSG00000044252	ProperStrand	48	1	-10.2459
chrX	73782676	73786782	LINE	Lx2	L1	chrXLx273781512	NonProperStrand	4	chr16	91506746	91506804	protein_coding	Ifnar1	utr3	ENSMUSG00000022967	ProperStrand	11	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr13	97190548	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	4	-5.9713
chr9	94526623	94526723	DNA	URR1A	MER1_type	chr9URR1A94526490	ProperStrand	3	chr9	94526730	94526820	LTR	RMER15	ERVL	chr9RMER1594526721	ProperStrand	3	3	-inf
chr12	85374485	85374518	LTR	ORR1E	MaLR	chr12ORR1E85374381	NonProperStrand	11	chr12	112600010	112600113	protein_coding	Cdc42bpb	intron	ENSMUSG00000021279	NonProperStrand	38	1	-16.4386
chr11	43720589	43720659	LINE	L1_Mur3	L1	chr11L1_Mur343719683	ProperStrand	1	chr11	43721926	43721987	LINE	L1_Mur3	L1	chr11L1_Mur343721682	ProperStrand	1	1	-inf
chr5	44015579	44015669	Simple_repeat	(GAAA)n	Simple_repeat	chr5(GAAA)n44015570	ProperStrand	2	chr5	44015703	44015803	Simple_repeat	(GGAA)n	Simple_repeat	chr5(GGAA)n44015685	ProperStrand	2	2	-inf
chr11	103385882	103385967	LTR	MTE2a-int	MaLR	chr11MTE2a-int103385562	ProperStrand	2	chr11	103386623	103386674	SINE	ID_B1	B4	chr11ID_B1103386585	NonProperStrand	1	1	-inf
chr8	107058477	107058523	protein_coding	Nae1	utr5	ENSMUSG00000031878	NonProperStrand	10	chr8	107058605	107058641	protein_coding	Car7	utr5	ENSMUSG00000031883	ProperStrand	12	1	-18.6939
chr13	23534243	23534314	LINE	L1MA6	L1	chr13L1MA623534197	ProperStrand	3	chr17	39847207	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr4	43492988	43493040	SINE	B3	B2	chr4B343492960	NonProperStrand	660	chr10	75860065	75860120	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	78	1	-6.7135
chr4	116693789	116693827	protein_coding	Eif2b3	intron	ENSMUSG00000028683	ProperStrand	53	chr13	44869972	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.7306
chr13	55248977	55249027	SINE	B1_Mur1	Alu	chr13B1_Mur155248921	ProperStrand	1	chr2	5379283	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	39848509	39848572	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr19	29125821	29125845	LTR	MLT1F2	MaLR	chr19MLT1F229125616	NonProperStrand	4	1	-6.9461
chr17	39845361	39845438	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr1	171503046	171503073	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	1	-3.1848
chr2	57068046	57068146	LTR	RLTR4_MM-int	ERV1	chr2RLTR4_MM-int57067519	NonProperStrand	1	chr2	46737985	46738075	LTR	RMER19B	ERVK	chr2RMER19B46737825	ProperStrand	1	1	-inf
chr17	39847701	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	55301094	55301195	SINE	PB1D7	Alu	chr13PB1D755301087	ProperStrand	1	1	-inf
chr6	122607064	122607119	SINE	B2_Mm2	B2	chr6B2_Mm2122607052	NonProperStrand	11	chr13	59610448	59610496	protein_coding	Agtpbp1	intron	ENSMUSG00000021557	NonProperStrand	51	1	-15.8206
chr9	18456180	18456270	LINE	Lx3C	L1	chr9Lx3C18455948	ProperStrand	1	chr17	39843453	39843553	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr10	59599072	59599162	SINE	B1F	Alu	chr10B1F59599070	ProperStrand	1	chr10	59598890	59598990	SINE	B2_Mm2	B2	chr10B2_Mm259598893	ProperStrand	1	1	-inf
chr11	78337797	78337857	protein_coding	Tnfaip1	utr3	ENSMUSG00000017615	NonProperStrand	23	chr17	80045822	80045886	protein_coding	Fam82a1	intron	ENSMUSG00000036368	NonProperStrand	31	1	-15.3092
chr3	96342502	96342592	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int96342093	NonProperStrand	1	chr3	96342716	96342816	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int96342698	NonProperStrand	1	1	-inf
chr3	99842555	99842645	protein_coding-noncoding	Spag17	utr5	ENSMUSG00000027867	NonProperStrand	1	chr3	99842329	99842429	protein_coding	Spag17	intron	ENSMUSG00000027867	NonProperStrand	6	1	-inf
chrX	20672507	20672887	LINE	Lx2A1	L1	chrXLx2A120672806	NonProperStrand	7	chr17	39848124	39848199	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.4467
chr14	50924742	50924830	LTR	RMER19C	ERVK	chr14RMER19C50924750	NonProperStrand	3	chr4	150237237	150237297	protein_coding	Errfi1	intron	ENSMUSG00000028967	ProperStrand	111	1	-17.1180
chr7	100923521	100923640	LINE	Lx3B	L1	chr7Lx3B100922983	ProperStrand	6	chr7	100918268	100918295	LTR	RMER6C	ERVK	chr7RMER6C100917821	NonProperStrand	2	2	-inf
chr14	110181407	110181506	LINE	Lx2	L1	chr14Lx2110181411	ProperStrand	1	chr14	110181050	110181140	LTR	RLTR17	ERVK	chr14RLTR17110180792	ProperStrand	1	1	-inf
chr18	51729202	51729302	LINE	L1MA6	L1	chr18L1MA651728658	ProperStrand	1	chr18	51729474	51729564	LINE	L1MA6	L1	chr18L1MA651729317	ProperStrand	1	1	-inf
chr1	150408025	150408125	LTR	MTEb	MaLR	chr1MTEb150408052	NonProperStrand	1	chr9	89987063	89987153	protein_coding	Morf4l1	utr3	ENSMUSG00000062270	NonProperStrand	1	1	-inf
chr3	22213541	22213631	LINE	L1Md_F2	L1	chr3L1Md_F222213251	ProperStrand	2	chr1	176631418	176631465	protein_coding	Fmn2	intron	ENSMUSG00000028354	NonProperStrand	16	1	-inf
chr2	104590843	104590943	SINE	B3	B2	chr2B3104590841	ProperStrand	4	chr2	104590726	104590816	SINE	PB1D7	Alu	chr2PB1D7104590680	ProperStrand	2	2	-inf
chr17	39847165	39847197	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	5083475	5083516	SINE	B3	B2	chr11B35083433	NonProperStrand	3	1	-5.4882
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr17	45569522	45569562	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-9.2062
chr8	74238331	74238431	protein_coding-noncoding	Fcho1	utr3	ENSMUSG00000070000	NonProperStrand	1	chr8	74238124	74238214	protein_coding	Fcho1	intron	ENSMUSG00000070000	NonProperStrand	1	1	-inf
chr17	39845604	39845662	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr10	127588088	127588172	protein_coding	Rbms2	intron	ENSMUSG00000040043	ProperStrand	38	1	-3.0360
chr2	143952221	143952321	DNA	MER44A	MER2_type	chr2MER44A143952167	NonProperStrand	2	chr2	143951684	143951725	LTR	ORR1A3	MaLR	chr2ORR1A3143951638	ProperStrand	2	2	-inf
chr2	146474080	146474134	LINE	Lx4A	L1	chr2Lx4A146473883	NonProperStrand	2	chr14	48148566	48148586	protein_coding	Fbxo34	intron	ENSMUSG00000037536	ProperStrand	4	1	-22.1285
chr17	39846286	39847058	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	62159173	62159333	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	7	-5.4073
chr9	77923869	77923959	LINE	L1_Mur3	L1	chr9L1_Mur377923831	NonProperStrand	8	chr5	124624890	124624990	protein_coding	Pitpnm2	intron	ENSMUSG00000029406	NonProperStrand	22	1	-18.3940
chr17	39847173	39847238	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	43398380	43398435	protein_coding	Gfod1	intron	ENSMUSG00000051335	NonProperStrand	4	1	-4.8204
chr2	114109196	114109311	LINE	Lx5	L1	chr2Lx5114108942	ProperStrand	2	chr5	146260994	146261042	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	2	-inf
chr19	25498817	25498907	protein_coding-noncoding	Kank1	utr5	ENSMUSG00000032702	ProperStrand	1	chr19	25499126	25499226	protein_coding	Kank1	intron	ENSMUSG00000032702	ProperStrand	85	1	-inf
chr11	77889258	77889358	protein_coding-noncoding	Eral1	utr3	ENSMUSG00000020832	NonProperStrand	1	chr11	77889095	77889185	protein_coding	Eral1	intron	ENSMUSG00000020832	NonProperStrand	2	1	-inf
chr17	39847341	39847421	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	115089534	115089573	protein_coding	Ndufs4	intron	ENSMUSG00000021764	NonProperStrand	4	1	-3.7035
chr7	75739385	75739479	LTR	MLT2B2	ERVL	chr7MLT2B275739157	ProperStrand	5	chr13	53220312	53220361	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	1	-15.2280
chr2	29125913	29126876	LINE	L1MB5	L1	chr2L1MB529125703	ProperStrand	8	chr9	123461842	123461883	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.8360
chr12	108492952	108493003	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n108492850	ProperStrand	1	chr4	132822487	132822517	protein_coding	Tmem222	utr3	ENSMUSG00000028857	ProperStrand	4	1	-inf
chr13	94800023	94800124	DNA	URR1B	MER1_type	chr13URR1B94800050	ProperStrand	1	chr13	94799913	94800003	SINE	B4	B4	chr13B494799919	NonProperStrand	1	1	-inf
chr3	106632682	106632788	LTR	RMER6-int	ERVK	chr3RMER6-int106632225	ProperStrand	1	chr9	123462108	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	107291592	107291692	LINE	L1M2	L1	chr2L1M2107291588	ProperStrand	1	chr2	107291698	107291788	SINE	B1_Mus1	Alu	chr2B1_Mus1107291711	NonProperStrand	1	1	-inf
chr5	146261174	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	55110277	55110316	protein_coding	Fat2	intron	ENSMUSG00000055333	NonProperStrand	19	1	-7.3464
chr9	122991969	122993305	protein_coding-noncoding	Zdhhc3	utr3	ENSMUSG00000025786	NonProperStrand	9	chr9	122991735	122993489	protein_coding	Zdhhc3	intron	ENSMUSG00000025786	NonProperStrand	28	2	-21.0653
chr14	79860961	79861035	protein_coding	Wbp4	utr3	ENSMUSG00000022023	NonProperStrand	30	chr7	109520581	109520628	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-11.2411
chr5	67973345	67973435	LTR	ORR1A1	MaLR	chr5ORR1A167973174	NonProperStrand	1	chr5	67973899	67973999	SINE	PB1D10	Alu	chr5PB1D1067973881	NonProperStrand	1	1	-inf
chr3	117069104	117069194	SINE	B2_Mm2	B2	chr3B2_Mm2117069065	NonProperStrand	1	chr3	117068854	117068954	SINE	B4A	B4	chr3B4A117068700	NonProperStrand	1	1	-inf
chr19	23270018	23270108	LINE	L1M2	L1	chr19L1M223269760	ProperStrand	1	chr19	23270180	23270280	LTR	ORR1E-int	MaLR	chr19ORR1E-int23270153	ProperStrand	1	1	-inf
chr2	30048794	30048865	protein_coding	Ccbl1	intron	ENSMUSG00000039648	ProperStrand	7	chr5	122381883	122381964	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-14.8572
chr17	39847128	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	194306095	194306113	protein_coding	Kcnh1	intron	ENSMUSG00000058248	NonProperStrand	16	2	-3.8817
chr5	110739653	110740246	protein_coding	Pole	intron	ENSMUSG00000007080	NonProperStrand	46	chr6	35197191	35197212	protein_coding	Nup205	intron	ENSMUSG00000038759	ProperStrand	23	1	-14.5064
chr17	70963685	70963765	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr16	93834750	93834802	protein_coding	Morc3	intron	ENSMUSG00000039456	ProperStrand	53	1	-6.4528
chr11	55484111	55484168	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr9	47593676	47593776	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	2	-16.5189
chr13	96705252	96705352	DNA	RCHARR1	MER1_type	chr13RCHARR196705031	NonProperStrand	1	chr13	96704872	96704962	LTR	RLTR15	ERVK	chr13RLTR1596704733	NonProperStrand	1	1	-inf
chr8	48467940	48468013	lincRNA	4930448N21Rik	intron	ENSMUSG00000086634	ProperStrand	141	chr1	131935763	131935831	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	2	-11.6512
chr14	8624832	8624915	SINE	ID_B1	B4	chr14ID_B18624805	NonProperStrand	1	chr14	8624077	8624152	processed_transcript	Gm10044	.	ENSMUSG00000072723	ProperStrand	28	1	-inf
chrX	112202660	112202750	LINE	L1_Mus1	L1	chrXL1_Mus1112199856	ProperStrand	1	chr7	139520562	139520662	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	1	-inf
chr14	95468898	95468920	LINE	L1_Mus1	L1	chr14L1_Mus195468298	ProperStrand	1	chr17	39846846	39846878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	36296229	36296262	LINE	L1Md_A	L1	chr9L1Md_A36294842	ProperStrand	2	chr5	146261170	146261226	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-12.4657
chr10	85330873	85331007	LTR	MERVL-int	ERVL	chr10MERVL-int85326234	NonProperStrand	2	chr16	21984026	21984050	protein_coding	Liph	exon	ENSMUSG00000044626	ProperStrand	24	1	-20.2563
chr9	123462005	123462035	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr14	49078591	49078697	protein_coding	6720456H20Rik	intron	ENSMUSG00000036339	ProperStrand	7	1	-5.1121
chr17	39845413	39845474	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr15	57975974	57976029	protein_coding	Wdyhv1	intron	ENSMUSG00000022359	NonProperStrand	10	1	-5.6150
chr9	44821595	44821695	LTR	ORR1A2	MaLR	chr9ORR1A244821618	ProperStrand	1	chr9	44808161	44809102	protein_coding	Cd3e	exon	ENSMUSG00000032093	ProperStrand	9	1	-inf
chr2	5796107	5796127	protein_coding	Sec61a2	intron	ENSMUSG00000025816	ProperStrand	23	chr15	95790976	95791052	protein_coding	Ano6	intron	ENSMUSG00000064210	ProperStrand	31	1	-15.3092
chr10	40258554	40258674	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr9	27004667	27004683	SINE	B2_Mm2	B2	chr9B2_Mm227004615	NonProperStrand	1	1	-inf
chr19	58854617	58854691	LINE	Lx2B	L1	chr19Lx2B58854551	NonProperStrand	2	chr19	58856682	58856762	LTR	MTD	MaLR	chr19MTD58856574	ProperStrand	2	2	-inf
chr10	83399150	83399184	LTR	MLT2B1	ERVL	chr10MLT2B183399040	NonProperStrand	2	chr17	39847981	39848064	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chrX	7924445	7924532	LINE	L1Md_F2	L1	chrXL1Md_F27924311	NonProperStrand	2	chr16	20537684	20537718	protein_coding	Ap2m1	utr5	ENSMUSG00000022841	ProperStrand	28	1	-21.0040
chr2	22744861	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr18	36614737	36614803	SINE	ID_B1	B4	chr18ID_B136614643	ProperStrand	1	1	-inf
chr16	95949386	95949476	LINE	Lx7	L1	chr16Lx795949207	ProperStrand	1	chr16	95949553	95949653	LINE	Lx8	L1	chr16Lx895949562	ProperStrand	1	1	-inf
chr1	178332132	178332162	Simple_repeat	(TCCA)n	Simple_repeat	chr1(TCCA)n178332122	NonProperStrand	1	chr8	70895947	70895967	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	1	-inf
chr17	39847847	39847870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	78944861	78944880	protein_coding	Chodl	exon	ENSMUSG00000022860	ProperStrand	3	1	-4.3512
chr11	9558562	9558654	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	73	chr12	102949720	102949780	protein_coding	Tc2n	utr5	ENSMUSG00000021187	NonProperStrand	2	1	-19.3551
chr5	137524204	137524288	DNA	MER44B	MER2_type	chr5MER44B137524225	NonProperStrand	7	chr15	81865677	81865702	protein_coding	Xrcc6	intron	ENSMUSG00000022471	NonProperStrand	20	1	-18.9516
chr9	62418843	62418879	LTR	MTD	MaLR	chr9MTD62418787	NonProperStrand	1	chr9	123462079	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847080	39847275	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	26064555	26073660	protein_coding	Adam9	intron	ENSMUSG00000031555	ProperStrand	13	2	-4.4697
chr5	52149306	52149374	DNA	Tigger13a	MER2_type	chr5Tigger13a52149260	NonProperStrand	1	chr5	52147748	52147771	LTR	MLT1C	MaLR	chr5MLT1C52147749	NonProperStrand	2	1	-inf
chr4	13604692	13604710	LINE	L1Md_F	L1	chr4L1Md_F13603253	ProperStrand	5	chr17	39848102	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-6.1691
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr12	55858955	55858993	protein_coding	Snx6	intron	ENSMUSG00000005656	NonProperStrand	7	1	-5.4467
chr1	191368706	191368758	LTR	ORR1C2	MaLR	chr1ORR1C2191368507	NonProperStrand	2	chr7	19350206	19350248	LTR	MERVL-int	ERVL	chr7MERVL-int19349627	NonProperStrand	3	2	-inf
chr16	91010134	91010234	protein_coding-noncoding	Synj1	utr3	ENSMUSG00000022973	ProperStrand	1	chr16	91010353	91010443	protein_coding	Synj1	utr5	ENSMUSG00000022973	ProperStrand	21	1	-inf
chr14	117214685	117214785	Low_complexity	polypurine	Low_complexity	chr14polypurine117214665	ProperStrand	1	chr14	117214567	117214657	Simple_repeat	(GAA)n	Simple_repeat	chr14(GAA)n117214486	ProperStrand	1	1	-inf
chr2	37596730	37596830	LTR	MTEa	MaLR	chr2MTEa37596676	NonProperStrand	1	chr2	37599136	37599226	SINE	B1_Mus2	Alu	chr2B1_Mus237599145	NonProperStrand	1	1	-inf
chrX	111902681	111902781	LINE	L1_Rod	L1	chrXL1_Rod111902449	NonProperStrand	1	chrX	111902782	111902872	LINE	Lx2B	L1	chrXLx2B111902803	ProperStrand	1	1	-inf
chr17	39846822	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	87826195	87826311	protein_coding	1700011E24Rik	intron	ENSMUSG00000036557	NonProperStrand	1	1	-inf
chr10	128040893	128040952	DNA	RCHARR1	MER1_type	chr10RCHARR1128040602	NonProperStrand	4	chr17	39846747	39846796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr3	142842721	142842811	LINE	L1_Mm	L1	chr3L1_Mm142842282	ProperStrand	1	chr3	142842999	142843099	LINE	L1_Mm	L1	chr3L1_Mm142842926	ProperStrand	1	1	-inf
chr3	97166281	97166352	LINE	L1MEc	L1	chr3L1MEc97166226	NonProperStrand	1	chr17	39847174	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39846818	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	64004704	64004778	pseudogene	Gm18294	.	ENSMUSG00000093416	NonProperStrand	4	1	-3.6552
chr17	39847440	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	24518725	24518743	protein_coding	Asb15	intron	ENSMUSG00000029685	NonProperStrand	2	1	-5.4040
chr10	4273211	4273231	LTR	MLT1A0	MaLR	chr10MLT1A04272953	NonProperStrand	4	chr6	58611360	58611453	protein_coding	Abcg2	intron	ENSMUSG00000029802	ProperStrand	28	1	-20.3032
chr9	123461846	123461936	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr2	130393497	130393597	protein_coding	Mrps26	utr3	ENSMUSG00000037740	NonProperStrand	15	1	-3.5950
chr10	37789345	37789404	LINE	L1Md_F2	L1	chr10L1Md_F237787854	ProperStrand	2	chr8	43295858	43295957	LINE	L1_Mus1	L1	chr8L1_Mus143295759	ProperStrand	29	1	-19.5186
chr5	146261266	146261323	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr6	4757625	4757700	lincRNA	RP23-353M17.3	exon	ENSMUSG00000093570	NonProperStrand	55	1	-8.0515
chr15	48734309	48734399	LINE	Lx5	L1	chr15Lx548734258	NonProperStrand	1	chr15	48734027	48734127	LTR	MTB_Mm	MaLR	chr15MTB_Mm48733959	NonProperStrand	1	1	-inf
chr11	100477216	100477270	protein_coding	Dnajc7	intron	ENSMUSG00000014195	ProperStrand	28	chr1	63582370	63582414	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	1	-9.5953
chr17	39846352	39846377	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	16648232	16648327	lincRNA	Gm16720	exon	ENSMUSG00000087414	NonProperStrand	4	1	-3.6552
chr17	39847270	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	26	chr9	100887906	100888252	protein_coding	Pccb	intron	ENSMUSG00000032527	ProperStrand	55	1	-13.8928
chr14	103090227	103090261	LTR	MLT1A	MaLR	chr14MLT1A103090177	ProperStrand	3	chr17	39847348	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr2	92251313	92251341	lincRNA	D930015M05Rik	intron	ENSMUSG00000084781	ProperStrand	29	chr6	17655469	17655518	protein_coding	St7	intron	ENSMUSG00000029534	ProperStrand	40	1	-14.3147
chr13	112578191	112578241	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr16	59472820	59472919	protein_coding	Mina	intron	ENSMUSG00000022724	ProperStrand	14	1	-7.0807
chr14	50846932	50846975	LTR	MTB	MaLR	chr14MTB50846593	NonProperStrand	1	chr17	39847844	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	47539994	47540117	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr9	44166570	44166590	protein_coding	Vps11	intron	ENSMUSG00000032127	ProperStrand	7	1	-14.5875
chr10	88796528	88796552	DNA	MER5A1	MER1_type	chr10MER5A188796463	NonProperStrand	1	chr7	100496671	100496754	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int100495866	ProperStrand	26	1	-inf
chr13	46690240	46690275	protein_coding	Cap2	intron	ENSMUSG00000021373	NonProperStrand	63	chr6	115807972	115808081	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	1	-10.7433
chr11	48800865	48800931	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr7	99479564	99479645	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-4.7348
chr11	96075024	96075645	SINE	RSINE1	B4	chr11RSINE196075510	ProperStrand	3	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-14.9894
chr2	37963666	37963764	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-4.4812
chr2	89665087	89665177	LINE	L1M2	L1	chr2L1M289665063	NonProperStrand	1	chr2	89665290	89665390	LTR	RLTR9A2	ERVK	chr2RLTR9A289665287	NonProperStrand	1	1	-inf
chr14	75846216	75846297	LTR	MTB_Mm	MaLR	chr14MTB_Mm75846072	NonProperStrand	17	chr1	64735319	64735390	antisense	2810408I11Rik	.	ENSMUSG00000087213	ProperStrand	99	2	-20.2980
chr10	80124832	80125481	SINE	B2_Mm1a	B2	chr10B2_Mm1a80124686	ProperStrand	7	chr17	24720810	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-13.4273
chr11	109011655	109011710	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr5	122449145	122449195	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	1	-4.3895
chr17	39847701	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	108990781	108990818	SINE	B1_Mur4	Alu	chr8B1_Mur4108990752	ProperStrand	1	1	-inf
chr2	31069257	31069380	protein_coding	Gpr107	intron	ENSMUSG00000000194	NonProperStrand	164	chr5	36715129	36715150	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-7.6605
chr10	128210244	128210268	DNA	URR1B	MER1_type	chr10URR1B128210244	ProperStrand	1	chr15	85177746	85177780	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	1	-inf
chr17	39846952	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	146293051	146293155	LTR	RMER19A	ERVK	chr5RMER19A146293032	NonProperStrand	1	1	-inf
chr6	3201470	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	102557504	102557522	protein_coding	Slc1a2	intron	ENSMUSG00000005089	ProperStrand	3	1	-9.0398
chr8	114937279	114937402	LTR	ORR1C2	MaLR	chr8ORR1C2114937091	NonProperStrand	1	chr9	66469159	66470240	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n66469103	ProperStrand	1	1	-inf
chr11	3181969	3182014	LTR	RLTR12B	ERVK	chr11RLTR12B3181964	ProperStrand	1	chr6	34722153	34722188	protein_coding	Cald1	intron	ENSMUSG00000029761	ProperStrand	9	1	-inf
chr17	39847341	39847363	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	63913914	63914051	LTR	RMER15-int	ERVL	chr7RMER15-int63913770	NonProperStrand	7	2	-4.7560
chr3	136791142	136791242	LINE	L1Md_A	L1	chr3L1Md_A136790908	NonProperStrand	1	chr3	136791269	136791359	LINE	L1Md_A	L1	chr3L1Md_A136791250	NonProperStrand	1	1	-inf
chr14	101341413	101341432	LTR	MTD	MaLR	chr14MTD101341323	NonProperStrand	1	chr6	93736785	93736913	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-inf
chr12	83873087	83873128	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	221	chr7	112786689	112786714	protein_coding	Arfip2	intron	ENSMUSG00000030881	NonProperStrand	24	1	-11.2623
chr8	83829285	83829350	LINE	L1M4	L1	chr8L1M483829297	ProperStrand	1	chr18	67311706	67311772	protein_coding	Gnal	intron	ENSMUSG00000024524	ProperStrand	146	1	-inf
chr3	14449065	14449165	LINE	L1Md_T	L1	chr3L1Md_T14447271	ProperStrand	1	chr12	67665468	67665558	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr10	128525493	128525539	LTR	RLTR19C	ERVK	chr10RLTR19C128525303	NonProperStrand	1	chr16	22104862	22104918	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-inf
chr17	39847843	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	74045075	74045149	LTR	RMER3D-int	ERVK	chr18RMER3D-int74043007	ProperStrand	5	1	-3.2379
chr9	44233106	44233218	LTR	RMER10A	ERVL	chr9RMER10A44233001	NonProperStrand	1	chr19	4762735	4762779	protein_coding	Rbm4b	intron	ENSMUSG00000033760	NonProperStrand	33	1	-inf
chr8	44905003	44905068	LINE	L1Md_F3	L1	chr8L1Md_F344904314	NonProperStrand	1	chr10	108268452	108268501	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	169	1	-inf
chr2	36550575	36550665	LTR	RMER17D2	ERVK	chr2RMER17D236550458	NonProperStrand	1	chr2	36550253	36550353	Simple_repeat	(TCCCC)n	Simple_repeat	chr2(TCCCC)n36550276	NonProperStrand	1	1	-inf
chr15	80082449	80082578	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	429	chr9	7778623	7778645	protein_coding	Tmem123	intron	ENSMUSG00000050912	ProperStrand	15	1	-10.9002
chr16	32642382	32642436	SINE	MIR	MIR	chr16MIR32642376	ProperStrand	1	chr14	61605766	61605816	protein_coding	Tnfrsf19	intron	ENSMUSG00000060548	NonProperStrand	11	1	-inf
chr17	39848486	39848513	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	105722875	105722912	protein_coding	Elp4	intron	ENSMUSG00000027167	ProperStrand	28	1	-3.0052
chrX	19306596	19306696	LINE	L1VL2	L1	chrXL1VL219306295	ProperStrand	1	chrX	19296025	19296115	LINE	L1_Mur3	L1	chrXL1_Mur319295398	ProperStrand	1	1	-inf
chr3	133468129	133468187	LINE	L1Md_F2	L1	chr3L1Md_F2133467707	NonProperStrand	8	chr17	39847264	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-3.3803
chr6	68670811	68670901	LINE	L1_Mus2	L1	chr6L1_Mus268669374	NonProperStrand	1	chr6	68671063	68671163	LTR	RLTR22_Mur	ERVK	chr6RLTR22_Mur68671033	NonProperStrand	1	1	-inf
chr17	39847438	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	99498748	99498765	SINE	B2_Mm1a	B2	chr15B2_Mm1a99498607	NonProperStrand	8	3	-6.7794
chr11	77329930	77330068	protein_coding	Abhd15	intron	ENSMUSG00000000686	ProperStrand	8	chr18	7927176	7927192	protein_coding	Wac	utr3	ENSMUSG00000024283	ProperStrand	36	1	-17.2733
chr5	129020571	129020711	LTR	MTC	MaLR	chr5MTC129020472	NonProperStrand	11	chr11	3977051	3977106	protein_coding	Sec14l3	utr3	ENSMUSG00000054986	ProperStrand	11	1	-18.9240
chr13	97190578	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr8	108768987	108769072	protein_coding	Prmt7	intron	ENSMUSG00000060098	ProperStrand	70	1	-4.8241
chr9	123462055	123462117	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	150472501	150472584	protein_coding	Acss1	intron	ENSMUSG00000027452	ProperStrand	16	1	-3.4729
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	chr2	32188961	32188986	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	1	-9.1907
chr4	116741701	116741813	protein_coding	Eif2b3	intron	ENSMUSG00000028683	ProperStrand	53	chr4	116800568	116800613	protein_coding	Tctex1d4	utr5	ENSMUSG00000047671	ProperStrand	1	1	-inf
chr15	98135046	98135146	SINE	B1_Mm	Alu	chr15B1_Mm98135000	NonProperStrand	1	chr15	98135136	98135226	Simple_repeat	(A)n	Simple_repeat	chr15(A)n98135146	NonProperStrand	1	1	-inf
chrX	4136306	4136354	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	chr13	44869598	44870026	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-12.2931
chr3	22197430	22197461	LINE	L1_Mus4	L1	chr3L1_Mus422197081	ProperStrand	1	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	129722737	129722824	antisense	Gm12963	.	ENSMUSG00000085517	ProperStrand	22	chr7	118109188	118110000	protein_coding	Mrvi1	intron	ENSMUSG00000005611	ProperStrand	87	2	-inf
chr2	52121029	52121087	protein_coding	Neb	intron	ENSMUSG00000026950	NonProperStrand	137	chr11	75079196	75079258	protein_coding	Rtn4rl1	exon	ENSMUSG00000045287	ProperStrand	44	1	-10.9901
chr17	39846736	39846800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	60611369	60611443	SINE	B3	B2	chr13B360611242	NonProperStrand	1	1	-inf
chr7	137695211	137695227	protein_coding	Nsmce4a	intron	ENSMUSG00000040331	NonProperStrand	3	chr2	127288669	127288706	protein_coding	Kcnip3	intron	ENSMUSG00000079056	NonProperStrand	14	1	-20.0603
chr17	34951500	34951564	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	120	chr6	128438493	128438538	protein_coding	Pzp	intron	ENSMUSG00000030359	ProperStrand	55	1	-10.8055
chr14	64734474	64734564	SINE	B3	B2	chr14B364734480	NonProperStrand	4	chr14	64734587	64734687	Simple_repeat	(TCTCTG)n	Simple_repeat	chr14(TCTCTG)n64734607	ProperStrand	4	4	-inf
chr9	123462136	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	146792617	146792720	protein_coding	Cyp3a25	intron	ENSMUSG00000029630	ProperStrand	18	1	-3.2529
chr8	43291179	43291220	LINE	Lx4B	L1	chr8Lx4B43290285	NonProperStrand	2	chr17	39846461	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr16	17284692	17284782	protein_coding-noncoding	Pi4ka	utr3	ENSMUSG00000041720	ProperStrand	4	chr16	17284531	17284631	protein_coding	Pi4ka	intron	ENSMUSG00000041720	ProperStrand	50	3	-inf
chr12	86460547	86460637	protein_coding	Dlst	intron	ENSMUSG00000004789	NonProperStrand	77	chr13	44869574	44869674	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-6.7507
chr7	4751828	4751867	SINE	B1_Mm	Alu	chr7B1_Mm4751719	NonProperStrand	1	chr7	4751986	4752018	SINE	B2_Mm1a	B2	chr7B2_Mm1a4751895	NonProperStrand	1	1	-inf
chr1	13165065	13165128	protein_coding	Ncoa2	exon	ENSMUSG00000005886	ProperStrand	185	chr5	115559821	115560761	pseudogene	Gm13826	.	ENSMUSG00000072692	NonProperStrand	36	1	-10.7943
chr13	112578228	112578298	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr17	27114459	27114504	protein_coding	Ggnbp1	intron	ENSMUSG00000048731	ProperStrand	31	1	-5.4842
chr17	39848716	39848762	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr8	107422673	107422730	LINE	L1Md_T	L1	chr8L1Md_T107422643	NonProperStrand	1	1	-inf
chr1	9473011	9473111	LINE	L1Md_A	L1	chr1L1Md_A9473003	ProperStrand	1	chr1	9472882	9472972	LINE	L1_Mur1	L1	chr1L1_Mur19472623	ProperStrand	1	1	-inf
chrX	53278713	53278732	LINE	L1Md_F2	L1	chrXL1Md_F253276365	ProperStrand	1	chr17	39847736	39847850	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	32979183	32979262	protein_coding	Garnl3	intron	ENSMUSG00000038860	ProperStrand	98	chr11	61526031	61526073	protein_coding	Slc5a10	intron	ENSMUSG00000042371	ProperStrand	108	1	-9.8563
chr12	59792702	59792719	LINE	L1Md_T	L1	chr12L1Md_T59787854	ProperStrand	2	chr17	39846460	39846528	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr1	89119014	89119105	protein_coding	Eif4e2	intron	ENSMUSG00000026254	ProperStrand	80	chr13	22003236	22003252	tRNA	tRNA84-AspGTC	.	343408	NonProperStrand	1	1	-inf
chr12	105974994	105975015	protein_coding	Dicer1	intron	ENSMUSG00000041415	ProperStrand	3	chr2	79292499	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-18.0574
chr2	38594262	38594362	protein_coding-noncoding	Nr6a1	utr3	ENSMUSG00000063972	ProperStrand	4	chr2	38594432	38594522	protein_coding	Nr6a1	exon	ENSMUSG00000063972	ProperStrand	112	2	-inf
chr17	39846891	39846935	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	55070963	55072717	LTR	IAPEz-int	ERVK	chr19IAPEz-int55069809	NonProperStrand	5	1	-3.1907
chr12	78350926	78351028	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr2	5379268	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	8	-4.8968
chr2	32009392	32009493	protein_coding	Prrc2b	intron	ENSMUSG00000039262	ProperStrand	61	chr7	15949475	15949491	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	19	1	-14.3191
chr1	44085814	44085904	LINE	L1_Mm	L1	chr1L1_Mm44085801	ProperStrand	1	chr1	44085663	44085763	LINE	L1_Mus3	L1	chr1L1_Mus344085524	ProperStrand	1	1	-inf
chr15	45011071	45011171	LINE	Lx7	L1	chr15Lx745011015	NonProperStrand	1	chr15	45011487	45011577	SINE	ID4	ID	chr15ID445011493	ProperStrand	1	1	-inf
chr11	83295838	83295928	protein_coding-noncoding	Taf15	utr5	ENSMUSG00000020680	ProperStrand	1	chr11	83296073	83296173	protein_coding	Taf15	intron	ENSMUSG00000020680	ProperStrand	14	1	-inf
chr17	39847174	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	36667427	36667480	protein_coding	Hbegf	intron	ENSMUSG00000024486	ProperStrand	6	1	-3.9545
chr17	12257938	12258028	LTR	MTEb	MaLR	chr17MTEb12257788	ProperStrand	5	chr17	12256792	12257944	Simple_repeat	(TAGA)n	Simple_repeat	chr17(TAGA)n12256794	NonProperStrand	5	5	-inf
chr6	137123203	137123288	LINE	L1_Mus3	L1	chr6L1_Mus3137123125	ProperStrand	1	chr6	137123037	137123078	LTR	MT2A	ERVL	chr6MT2A137122984	NonProperStrand	1	1	-inf
chr17	39846523	39847028	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	87426740	87426883	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	9	-4.2403
chr11	62604511	62604542	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr5	110803467	110803553	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	ProperStrand	131	1	-11.2724
chr10	40258543	40258633	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr4	149116661	149116761	SINE	B1_Mus1	Alu	chr4B1_Mus1149116612	ProperStrand	2	2	-inf
chr17	39843846	39843946	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr10	115217579	115218563	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n115217593	NonProperStrand	1	1	-inf
chr13	35012811	35012932	SINE	B3	B2	chr13B335012706	ProperStrand	1	chr9	118674951	118674988	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr4	33323244	33323290	LTR	ORR1D1-int	MaLR	chr4ORR1D1-int33323059	NonProperStrand	2	chr4	33324057	33324151	LTR	ORR1D1-int	MaLR	chr4ORR1D1-int33323687	NonProperStrand	2	2	-inf
chr6	34137786	34137887	LTR	ORR1D1-int	MaLR	chr6ORR1D1-int34137747	NonProperStrand	1	chr6	34137455	34137545	LTR	ORR1D1	MaLR	chr6ORR1D134137454	NonProperStrand	1	1	-inf
chr2	118609975	118614976	protein_coding-noncoding	Disp2	utr5	ENSMUSG00000040035	ProperStrand	7	chr2	118609822	118612609	protein_coding	Disp2	intron	ENSMUSG00000040035	ProperStrand	47	6	-inf
chr6	125162671	125162884	LINE	L1MEd	L1	chr6L1MEd125162471	ProperStrand	31	chr8	25533437	25533490	lincRNA	Gm16625	intron	ENSMUSG00000084900	ProperStrand	52	1	-13.6480
chr12	12404803	12404903	LINE	Lx5	L1	chr12Lx512403925	ProperStrand	2	chr12	12405244	12405334	LINE	Lx5	L1	chr12Lx512404857	NonProperStrand	2	2	-inf
chr4	127033112	127033229	protein_coding	Gjb5	exon	ENSMUSG00000042357	NonProperStrand	30	chr4	127031082	127031119	protein_coding	Gjb4	intron	ENSMUSG00000046623	NonProperStrand	20	1	-15.6614
chr7	136966677	136966767	LTR	RLTR11B	ERVK	chr7RLTR11B136966571	NonProperStrand	1	chr7	136966770	136966870	LTR	RLTR11B	ERVK	chr7RLTR11B136966703	NonProperStrand	2	1	-inf
chr10	8751472	8756716	LINE	L1_Mus1	L1	chr10L1_Mus18752562	NonProperStrand	6	chr11	75744256	75744311	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	1	-14.8674
chr16	50193463	50193481	protein_coding	Bbx	utr3	ENSMUSG00000022641	ProperStrand	76	chr18	84546703	84546819	protein_coding	Zfp407	intron	ENSMUSG00000048410	ProperStrand	208	2	-14.3610
chr1	179534158	179534212	LINE	L2b	L2	chr1L2b179534117	NonProperStrand	1	chr8	107170977	107171079	antisense	1700082M22Rik	.	ENSMUSG00000023737	ProperStrand	11	1	-inf
chr10	95275546	95275657	LINE	L1Md_F2	L1	chr10L1Md_F295275523	NonProperStrand	2	chr17	39846822	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-inf
chr7	113279487	113279503	LINE	Lx5	L1	chr7Lx5113278089	NonProperStrand	8	chr13	44869609	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.5479
chr10	21362407	21362466	LTR	IAPLTR1_Mm	ERVK	chr10IAPLTR1_Mm21362092	NonProperStrand	1	chr2	152277787	152277856	Other	RMER1A	Other	chr2RMER1A152277456	NonProperStrand	3	1	-inf
chr9	114997799	114997822	protein_coding	Osbpl10	intron	ENSMUSG00000040875	ProperStrand	191	chr7	133052425	133052512	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.0124
chr8	84828360	84828391	LTR	IAPLTR2_Mm	ERVK	chr8IAPLTR2_Mm84828149	ProperStrand	1	chr3	88899428	88899469	protein_coding	Fdps	intron	ENSMUSG00000059743	ProperStrand	2	1	-inf
chr15	99498748	99498764	SINE	B2_Mm1a	B2	chr15B2_Mm1a99498607	NonProperStrand	8	chr4	53860712	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-13.5668
chr17	39844635	39844709	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr16	65545161	65545245	protein_coding	Chmp2b	intron	ENSMUSG00000004843	ProperStrand	11	1	-5.8067
chrX	23944420	23944510	LINE	L1_Mus3	L1	chrXL1_Mus323944382	ProperStrand	1	chrX	23944161	23944261	LTR	RLTR14-int	ERV1	chrXRLTR14-int23943693	ProperStrand	1	1	-inf
chr9	123462008	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr1	93420467	93420485	protein_coding	Traf3ip1	intron	ENSMUSG00000034292	ProperStrand	4	1	-6.3300
chr5	146261240	146261281	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	chr19	5801914	5802029	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-3.8265
chr12	8922203	8922293	LINE	L1MA9	L1	chr12L1MA98922137	ProperStrand	3	chr12	8922287	8931720	protein_coding	Laptm4a	intron	ENSMUSG00000020585	ProperStrand	8	3	-inf
chr10	8326622	8326672	LINE	L1_Mm	L1	chr10L1_Mm8326180	NonProperStrand	2	chr4	133749510	133749570	protein_coding	Gm7534	intron	ENSMUSG00000073747	ProperStrand	40	2	-inf
chrX	77662336	77662441	LINE	L1_Mus2	L1	chrXL1_Mus277662334	ProperStrand	1	chr16	42726539	42726555	lincRNA	4932412D23Rik	exon	ENSMUSG00000075070	ProperStrand	10	1	-inf
chr10	30534127	30534217	LTR	IAPEz-int	ERVK	chr10IAPEz-int30534137	NonProperStrand	4	chr10	30533996	30534096	LTR	IAPLTR1a_Mm	ERVK	chr10IAPLTR1a_Mm30533799	NonProperStrand	3	3	-inf
chr17	56124404	56124476	SINE	B3	B2	chr17B356124394	NonProperStrand	2	chr17	56128369	56128437	protein_coding	Fsd1	intron	ENSMUSG00000011589	NonProperStrand	4	2	-inf
chr11	85048054	85048111	protein_coding	Appbp2	intron	ENSMUSG00000018481	ProperStrand	12	chr6	32998000	32998076	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	1	-12.8516
chr10	125176885	125176917	SINE	B2_Mm1a	B2	chr10B2_Mm1a125176749	NonProperStrand	1	chr3	104055243	104055265	SINE	B4A	B4	chr3B4A104055244	NonProperStrand	1	1	-inf
chr16	24984418	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr1	93221337	93221355	protein_coding	Espnl	intron	ENSMUSG00000049515	ProperStrand	18	1	-12.3887
chrX	73928010	73928138	LINE	L1_Mus2	L1	chrXL1_Mus273927702	ProperStrand	4	chr4	43751859	43756125	LTR	MLT1D	MaLR	chr4MLT1D43751743	ProperStrand	3	1	-inf
chr4	141162436	141162457	SINE	B1_Mus1	Alu	chr4B1_Mus1141162404	ProperStrand	1	chr4	141148929	141149067	protein_coding	Fblim1	intron	ENSMUSG00000006219	NonProperStrand	30	1	-inf
chr8	117804186	117804233	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	chr9	65790425	65790469	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	NonProperStrand	105	1	-5.0304
chr5	146261323	146261351	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr16	25892042	25892058	protein_coding	Trp63	utr3	ENSMUSG00000022510	ProperStrand	10	1	-11.5340
chr9	110281288	110281347	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr18	10151070	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	1	-8.5873
chr17	39846811	39847146	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	39135349	39242323	protein_coding	Fyn	intron	ENSMUSG00000019843	ProperStrand	12	3	-4.9509
chr17	39847159	39847204	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	73146176	73146231	LTR	MERVK26-int	ERVK	chr8MERVK26-int73145694	ProperStrand	1	1	-inf
chr7	29915132	29915225	LTR	MTEa	MaLR	chr7MTEa29915115	NonProperStrand	1	chr13	44869605	44869670	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr1	33475787	33475873	LINE	L1Md_F2	L1	chr1L1Md_F233471715	NonProperStrand	1	chr17	39846822	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	87789170	87789250	LTR	MERVL_2A-int	ERVL	chr1MERVL_2A-int87788923	ProperStrand	1	chr1	134636744	134636806	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	1	-inf
chr17	39846932	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	8967213	8967270	SINE	B1_Mus1	Alu	chr19B1_Mus18967124	NonProperStrand	2	1	-5.3533
chr7	140375538	140375638	LINE	L1MB2	L1	chr7L1MB2140375567	NonProperStrand	1	chr7	140375343	140375433	LINE	Lx8	L1	chr7Lx8140375025	NonProperStrand	1	1	-inf
chr16	16503200	16503216	protein_coding	Fgd4	intron	ENSMUSG00000022788	ProperStrand	40	chr1	75213672	75213730	protein_coding	Tuba4a	intron	ENSMUSG00000026202	ProperStrand	7	1	-17.3038
chr3	153614054	153614154	LTR	ORR1A4-int	MaLR	chr3ORR1A4-int153613981	NonProperStrand	1	chr3	153614209	153614299	LTR	RMER19C	ERVK	chr3RMER19C153614154	ProperStrand	4	1	-inf
chr5	123095543	123095628	protein_coding	P2rx7	intron	ENSMUSG00000029468	ProperStrand	16	chr13	97190561	97190619	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	79292499	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-4.2822
chr18	24767941	24768041	protein_coding	Elp2	intron	ENSMUSG00000024271	ProperStrand	44	chr8	18774274	18774364	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	3	-16.9412
chr12	54696783	54696851	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr8	107542779	107542844	protein_coding	Ces2h	intron	ENSMUSG00000091813	ProperStrand	4	1	-16.0658
chr16	44845738	44845828	LTR	ORR1C2	MaLR	chr16ORR1C244845719	NonProperStrand	1	chr16	44845885	44845985	SINE	ID_B1	B4	chr16ID_B144845894	ProperStrand	1	1	-inf
chr6	20055062	20055162	Simple_repeat	(TCTCC)n	Simple_repeat	chr6(TCTCC)n20055057	ProperStrand	1	chr6	20054968	20055058	Simple_repeat	(TTTTC)n	Simple_repeat	chr6(TTTTC)n20054979	ProperStrand	1	1	-inf
chr17	39847239	39847278	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	120479116	120479186	protein_coding	Cecr5	intron	ENSMUSG00000058979	NonProperStrand	2	1	-6.5615
chr19	53031145	53031212	protein_coding	Xpnpep1	intron	ENSMUSG00000025027	ProperStrand	32	chr3	31010128	31010149	protein_coding	Skil	intron	ENSMUSG00000027660	ProperStrand	56	1	-13.4317
chr17	6449543	6449591	lincRNA	Gm17692	intron	ENSMUSG00000091795	ProperStrand	10	chr19	6058520	6059150	protein_coding	Fau	exon	ENSMUSG00000038274	ProperStrand	58	1	-15.7621
chr1	89845465	89845499	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	chr11	97256158	97256278	protein_coding	Socs7	utr3	ENSMUSG00000038485	NonProperStrand	32	1	-11.0656
chr5	146261173	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	141594250	141594375	protein_coding	Slco1b2	intron	ENSMUSG00000030236	NonProperStrand	24	1	-6.8742
chr17	93016545	93016635	LINE	L1Md_F2	L1	chr17L1Md_F293011006	NonProperStrand	1	chr1	4960534	4960634	protein_coding	Rgs20	intron	ENSMUSG00000002459	NonProperStrand	11	1	-inf
chr15	6039935	6039991	LINE	L1_Mus3	L1	chr15L1_Mus36039346	NonProperStrand	1	chr13	44869602	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr17	39847107	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	33987559	34360825	protein_coding	Kalrn	intron	ENSMUSG00000061751	NonProperStrand	17	2	-3.7154
chr5	129022401	129022500	DNA	URR1A	MER1_type	chr5URR1A129022287	ProperStrand	11	chr17	39846381	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-3.3422
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	73	1	-9.4141
chr9	43088639	43088731	SINE	B1F	Alu	chr9B1F43088607	ProperStrand	1	chr9	43088508	43088608	Simple_repeat	(TC)n	Simple_repeat	chr9(TC)n43088535	NonProperStrand	1	1	-inf
chrX	74241711	74241811	LTR	RLTR13D5	ERVK	chrXRLTR13D574241136	ProperStrand	1	chr9	120959546	120959564	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	1	-inf
chr5	150569276	150569335	LINE	Lx7	L1	chr5Lx7150569258	ProperStrand	1	chr5	150569600	150569669	LTR	MTD	MaLR	chr5MTD150569443	ProperStrand	2	1	-inf
chr13	24474817	24474843	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	21	chr11	33455146	33455182	protein_coding	Gabrp	intron	ENSMUSG00000020159	ProperStrand	24	1	-16.0093
chr1	192745573	192745687	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr13	97190544	97190576	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.5577
chr11	48800358	48800415	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	chr9	56223571	56223653	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-5.7783
chr5	146261041	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr18	77778624	77778815	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-2.9984
chr8	45030154	45030234	LINE	L1M2	L1	chr8L1M245030053	ProperStrand	2	chr9	123462079	123462112	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr16	96183236	96183276	LTR	RMER16	ERVK	chr16RMER1696183035	NonProperStrand	3	chr14	21498430	21498532	protein_coding	Sec24c	intron	ENSMUSG00000039367	ProperStrand	81	1	-17.6791
chr7	81327339	81327429	Simple_repeat	(CAGC)n	Simple_repeat	chr7(CAGC)n81327296	ProperStrand	1	chr7	81327559	81327659	Simple_repeat	(CAGC)n	Simple_repeat	chr7(CAGC)n81327495	ProperStrand	1	1	-inf
chr4	118436050	118436270	LINE	L1Md_F2	L1	chr4L1Md_F2118433747	ProperStrand	10	chr16	62859079	62859113	protein_coding	Pros1	intron	ENSMUSG00000022912	ProperStrand	29	1	-17.1057
chr14	19278161	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr13	49467722	49467746	protein_coding	Bicd2	intron	ENSMUSG00000037933	NonProperStrand	57	1	-11.6505
chr17	39847506	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	155970774	155970887	protein_coding	Romo1	intron	ENSMUSG00000067847	ProperStrand	1	1	-inf
chr1	89555020	89555119	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	chr15	93346684	93346703	protein_coding	Prickle1	intron	ENSMUSG00000036158	NonProperStrand	23	1	-9.9771
chr10	81507729	81507791	LINE	L1_Mur2	L1	chr10L1_Mur281507383	NonProperStrand	1	chr10	81506712	81506743	LINE	Lx5	L1	chr10Lx581506648	ProperStrand	1	1	-inf
chr19	46083251	46083282	lincRNA	4930505N22Rik	intron	ENSMUSG00000090325	ProperStrand	37	chr17	24405251	24405359	protein_coding	Abca17	intron	ENSMUSG00000035435	NonProperStrand	73	1	-12.6060
chr3	91289997	91290087	LTR	ORR1A4-int	MaLR	chr3ORR1A4-int91289759	NonProperStrand	1	chr3	91289500	91289600	LTR	ORR1A4	MaLR	chr3ORR1A491289415	NonProperStrand	1	1	-inf
chr5	146261164	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	38771329	38771456	protein_coding	Nr6a1	intron	ENSMUSG00000063972	ProperStrand	112	2	-6.5224
chr6	124685205	124685311	processed_transcript	Gm20531	.	ENSMUSG00000092482	ProperStrand	7	chr6	124675971	124676015	protein_coding	Ptpn6	intron	ENSMUSG00000004266	NonProperStrand	51	2	-inf
chr13	9834304	9834372	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr13	44869574	44869680	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	3	-5.2750
chr17	39846818	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	52898082	52898160	LTR	ORR1B1	MaLR	chr1ORR1B152898000	ProperStrand	2	2	-inf
chr17	22715329	22715359	LINE	L1_Mur1	L1	chr17L1_Mur122715213	NonProperStrand	1	chr3	103821885	103821984	protein_coding	Phtf1	intron	ENSMUSG00000058388	ProperStrand	5	1	-inf
chr18	56804131	56804165	LTR	RMER16	ERVK	chr18RMER1656804129	ProperStrand	2	chr2	155457561	155457683	protein_coding	Myh7b	intron	ENSMUSG00000074652	NonProperStrand	20	1	-20.4416
chr11	7498973	7498994	LINE	L1_Rod	L1	chr11L1_Rod7498274	NonProperStrand	1	chr7	96396853	96396978	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-inf
chr10	81180591	81180823	SINE	B2_Mm1t	B2	chr10B2_Mm1t81180542	ProperStrand	21	chr10	81182228	81182457	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	177	6	-22.2910
chr14	73250130	73250203	SINE	B3	B2	chr14B373250080	NonProperStrand	1	chr14	70611465	70611528	lincRNA	Gm16600	intron	ENSMUSG00000085557	NonProperStrand	20	1	-inf
chr5	146261164	146261212	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	34379518	34379628	LTR	ORR1B1-int	MaLR	chr7ORR1B1-int34379168	ProperStrand	2	1	-12.4657
chr19	35094907	35094997	LINE	Lx8	L1	chr19Lx835094846	ProperStrand	1	chr19	35095168	35095268	LTR	ORR1A3	MaLR	chr19ORR1A335095139	NonProperStrand	1	1	-inf
chr15	12209577	12209602	LTR	MTC	MaLR	chr15MTC12209389	ProperStrand	1	chr15	12228224	12228302	LTR	RLTR14	ERV1	chr15RLTR1412227969	ProperStrand	1	1	-inf
chr11	109011827	109011854	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	21940354	21940391	SINE	B1F2	Alu	chr13B1F221940316	ProperStrand	2	1	-13.5345
chr7	123784707	123784807	Simple_repeat	(CAGAGA)n	Simple_repeat	chr7(CAGAGA)n123784683	ProperStrand	1	chr7	123784504	123784594	Simple_repeat	(GA)n	Simple_repeat	chr7(GA)n123784497	ProperStrand	1	1	-inf
chr11	69969880	69969970	LTR	MERVL-int	ERVL	chr11MERVL-int69969842	NonProperStrand	2	chr11	69969742	69969842	LTR	MT2_Mm	ERVL	chr11MT2_Mm69969337	NonProperStrand	1	1	-inf
chr17	80445461	80445495	protein_coding	Hnrpll	intron	ENSMUSG00000024095	ProperStrand	32	chr11	33755082	33755106	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	36	1	-14.3284
chr5	146261000	146261070	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	126962840	126962905	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-3.8407
chr11	97756885	97756975	LTR	RLTR28	ERVL	chr11RLTR2897756901	NonProperStrand	5	chr11	97756733	97756833	SINE	B1_Mur3	Alu	chr11B1_Mur397756749	ProperStrand	5	5	-inf
chr2	85037819	85037879	antisense	Gm13716	.	ENSMUSG00000086905	ProperStrand	3	chr9	123461964	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr7	24559505	24559554	LINE	L1_Mus3	L1	chr7L1_Mus324559337	ProperStrand	1	chr14	60693888	60693988	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	1	-inf
chr8	25538417	25538532	lincRNA	Gm16625	intron	ENSMUSG00000084900	ProperStrand	52	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-10.2328
chr9	22826782	22826836	SINE	B3	B2	chr9B322826674	NonProperStrand	1	chr12	101856045	101856116	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	1	-inf
chr9	110179340	110179386	LTR	RLTR19A	ERVK	chr9RLTR19A110179251	NonProperStrand	1	chr9	110179404	110179435	SINE	ID_B1	B4	chr9ID_B1110179369	ProperStrand	1	1	-inf
chr2	67953529	67953629	protein_coding	B3galt1	intron	ENSMUSG00000034780	NonProperStrand	2	chr2	67953918	67954008	protein_coding	B3galt1	intron	ENSMUSG00000034780	ProperStrand	5	1	-inf
chr13	51720576	51722379	LTR	MERVL-int	ERVL	chr13MERVL-int51720591	ProperStrand	1	chr13	51714854	51720572	SINE	B2_Mm2	B2	chr13B2_Mm251715153	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr9	21399241	21399454	protein_coding	1810026J23Rik	utr3	ENSMUSG00000048429	ProperStrand	26	1	-8.2455
chr5	5211923	5211976	protein_coding	Cdk14	intron	ENSMUSG00000028926	ProperStrand	13	chr13	97190561	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.1850
chr4	139273426	139273526	SINE	B4	B4	chr4B4139273439	NonProperStrand	1	chr4	139273276	139273364	Simple_repeat	(TCTCTG)n	Simple_repeat	chr4(TCTCTG)n139273221	ProperStrand	6	1	-inf
chr15	89427805	89427842	LINE	L1VL2	L1	chr15L1VL289427387	NonProperStrand	1	chr15	89426620	89426647	SINE	B4	B4	chr15B489426478	ProperStrand	1	1	-inf
chr7	130678560	130678650	LINE	L1MD2	L1	chr7L1MD2130678460	NonProperStrand	3	chr7	130678702	130678802	LINE	L1MD2	L1	chr7L1MD2130678575	NonProperStrand	4	3	-inf
chr17	39846766	39846820	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	139229034	139229148	SINE	B4	B4	chr4B4139229003	NonProperStrand	2	1	-5.3533
chr11	107496182	107496272	protein_coding-noncoding	Helz	utr5	ENSMUSG00000020721	ProperStrand	1	chr11	107496283	107496383	protein_coding	Helz	exon	ENSMUSG00000020721	ProperStrand	27	1	-inf
chr16	33264271	33279186	protein_coding	Snx4	intron	ENSMUSG00000022808	ProperStrand	21	chr9	123461840	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-7.7375
chr7	144920907	144920936	LTR	ORR1D2	MaLR	chr7ORR1D2144920733	NonProperStrand	1	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-inf
chr15	76790576	76790661	LTR	RLTR13B1	ERVK	chr15RLTR13B176790409	NonProperStrand	1	chr17	39847142	39847199	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39842998	39843079	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr5	107904585	107904649	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-3.8928
chr3	122423953	122424043	LINE	L1_Rod	L1	chr3L1_Rod122423824	NonProperStrand	1	chr3	122424416	122424516	LINE	Lx9	L1	chr3Lx9122424092	NonProperStrand	1	1	-inf
chr1	136364888	136364961	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr1	133603968	133604051	protein_coding	5430435G22Rik	intron	ENSMUSG00000052688	NonProperStrand	19	2	-19.1365
chr13	9834303	9834511	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr17	39846353	39847070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	35	-10.0743
chr9	123461930	123461987	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chrX	95444682	95444729	protein_coding	Ar	intron	ENSMUSG00000046532	NonProperStrand	15	1	-3.5950
chr7	133009040	133009093	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	NonProperStrand	292	chr3	126446649	126446666	protein_coding	Camk2d	intron	ENSMUSG00000053819	NonProperStrand	6	1	-13.6165
chrX	74037097	74037221	LINE	L1Md_F2	L1	chrXL1Md_F274037130	NonProperStrand	1	chr6	52189839	52189858	protein_coding	Hoxa10	intron	ENSMUSG00000000938	NonProperStrand	4	1	-inf
chr10	13674433	13674525	LTR	MERVL-int	ERVL	chr10MERVL-int13673914	NonProperStrand	1	chr10	13675450	13675498	LTR	MT2B	ERVL	chr10MT2B13675385	NonProperStrand	1	1	-inf
chrX	101200064	101200164	LTR	RLTR14	ERV1	chrXRLTR14101199980	NonProperStrand	1	chrX	101204958	101205048	SINE	B1_Mur1	Alu	chrXB1_Mur1101204920	NonProperStrand	1	1	-inf
chr1	118563435	118563483	LTR	MMERVK10C-int	ERVK	chr1MMERVK10C-int118563402	NonProperStrand	1	chr1	118564277	118564315	LTR	MMERVK10C-int	ERVK	chr1MMERVK10C-int118564142	NonProperStrand	1	1	-inf
chr4	53860728	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr5	135888132	135888240	protein_coding	Hip1	intron	ENSMUSG00000039959	NonProperStrand	75	1	-8.9796
chr2	88744913	88745003	LINE	L1_Mus2	L1	chr2L1_Mus288744536	NonProperStrand	1	chr2	88745048	88745148	LINE	Lx3C	L1	chr2Lx3C88745014	NonProperStrand	1	1	-inf
chr17	39847621	39847657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	64108224	64162367	protein_coding	3110047P20Rik	intron	ENSMUSG00000090061	ProperStrand	21	3	-3.0293
chr13	9834326	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr10	127556296	127556662	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	148	1	-7.3067
chr18	23401702	23401739	LINE	L1_Mm	L1	chr18L1_Mm23400150	NonProperStrand	1	chr17	39847366	39847408	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	109011694	109011720	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	41126776	41126834	LINE	L2	L2	chr8L241126706	ProperStrand	1	1	-inf
chr2	131285171	131285229	LTR	RLTR23	ERV1	chr2RLTR23131285061	ProperStrand	1	chr5	140042129	140042223	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	1	-inf
chr4	142208083	142208183	SINE	B4	B4	chr4B4142208079	ProperStrand	1	chr4	142208203	142208294	SINE	B4	B4	chr4B4142208218	ProperStrand	1	1	-inf
chr4	155303656	155303746	SINE	B1_Mus2	Alu	chr4B1_Mus2155303652	ProperStrand	1	chr4	155303745	155303845	misc_RNA	AL627204.1	.	ENSMUSG00000092798	NonProperStrand	1	1	-inf
chrX	161949504	161949604	LINE	L1VL4	L1	chrXL1VL4161949468	NonProperStrand	1	chrX	161949267	161949357	LTR	MTC-int	MaLR	chrXMTC-int161948785	NonProperStrand	1	1	-inf
chr17	39847277	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	22012241	22012272	protein_coding	1810064F22Rik	exon	ENSMUSG00000090925	NonProperStrand	7	1	-3.6430
chr4	52444716	52444806	antisense	2700081L22Rik	.	ENSMUSG00000085763	NonProperStrand	4	chrX	130194158	130194258	protein_coding	Pcdh19	intron	ENSMUSG00000051323	NonProperStrand	20	1	-20.7310
chr10	14349575	14349675	LINE	L1VL1	L1	chr10L1VL114349499	ProperStrand	1	chr10	14349869	14349959	LINE	L1_Mus3	L1	chr10L1_Mus314349764	NonProperStrand	1	1	-inf
chr9	97076433	97076533	LINE	L1M2	L1	chr9L1M297076251	NonProperStrand	15	chr9	97076561	97076651	SINE	B3A	B2	chr9B3A97076549	NonProperStrand	5	4	-inf
chr6	17665574	17665676	protein_coding	St7	intron	ENSMUSG00000029534	ProperStrand	40	chr12	54103021	54103074	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-10.4453
chr16	16288606	16288734	LINE	L1_Mur3	L1	chr16L1_Mur316288643	ProperStrand	1	chr9	123461969	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr15	41811732	41811808	LINE	Lx5	L1	chr15Lx541811080	ProperStrand	1	chr9	123461957	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	91707740	91707791	protein_coding	Slc6a6	utr3	ENSMUSG00000030096	ProperStrand	99	chr14	24492027	24492082	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-9.4960
chr2	37584415	37584464	LTR	ORR1B1	MaLR	chr2ORR1B137584192	NonProperStrand	1	chr12	55057292	55057342	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	1	-inf
chr17	39847441	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	44739989	44740051	SINE	ID_B1	B4	chr13ID_B144739962	NonProperStrand	1	1	-inf
chr11	101298959	101299049	LINE	L1Md_F2	L1	chr11L1Md_F2101298941	NonProperStrand	4	chr11	101298772	101298887	SINE	B3	B2	chr11B3101298756	NonProperStrand	3	3	-inf
mmu-miR-690	0	19	miRNA	mmu-miR-690	.	mmu-miR-690	ProperStrand	5	chr12	86479702	86479833	protein_coding	Rps6kl1	intron	ENSMUSG00000019235	NonProperStrand	221	1	-14.5776
chr13	9834303	9834441	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr5	146261303	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	2	-8.2550
chr17	39847735	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	96612365	96612383	Low_complexity	GA-rich	Low_complexity	chr10GA-rich96612368	NonProperStrand	2	1	-5.4040
chr11	36121707	36121726	protein_coding	Odz2	intron	ENSMUSG00000049336	NonProperStrand	36	chr11	116538786	116538807	protein_coding	St6galnac2	utr3	ENSMUSG00000057286	ProperStrand	31	1	-14.3963
chr12	77612369	77612413	SINE	B2_Mm1a	B2	chr12B2_Mm1a77612326	NonProperStrand	1	chr12	77599280	77599358	SINE	ID_B1	B4	chr12ID_B177599252	ProperStrand	1	1	-inf
chr2	152686579	152686611	protein_coding	Tpx2	intron	ENSMUSG00000027469	ProperStrand	42	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-6.6768
chr1	110655650	110655740	LINE	L1_Mus3	L1	chr1L1_Mus3110655466	NonProperStrand	1	chr1	110655788	110655888	LINE	Lx2B	L1	chr1Lx2B110655803	NonProperStrand	1	1	-inf
chr15	77950424	77950514	processed_transcript	A730060N03Rik	.	ENSMUSG00000092375	NonProperStrand	58	chr15	77950317	77950417	protein_coding	Cacng2	utr5	ENSMUSG00000019146	ProperStrand	169	2	-15.7938
chr17	39847628	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrY	1018587	1018677	Low_complexity	CT-rich	Low_complexity	chrYCT-rich1018602	ProperStrand	2	1	-5.4040
chr16	11447262	11447317	protein_coding	Snx29	intron	ENSMUSG00000071669	ProperStrand	265	chr14	8162687	8162763	protein_coding	Gm5797	intron	ENSMUSG00000072726	ProperStrand	1	1	-inf
chr3	124865588	124865688	LINE	L1MC2	L1	chr3L1MC2124865564	NonProperStrand	1	chr3	124865369	124865459	SINE	B3	B2	chr3B3124865348	NonProperStrand	1	1	-inf
chr17	39847248	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	124684370	124684433	processed_transcript	Gm20531	.	ENSMUSG00000092482	ProperStrand	7	1	-3.6430
chr17	39846526	39846542	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	33640203	33640228	LTR	RLTR10-int	ERVK	chr7RLTR10-int33639354	ProperStrand	1	1	-inf
chr1	71638572	71640378	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	chr18	65624783	65624873	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	1	-7.6878
chr12	88441230	88446646	protein_coding	Ngb	intron	ENSMUSG00000021032	NonProperStrand	1	chr4	32912311	32912449	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	144	1	-inf
chr5	88556006	88556023	LINE	Lx9	L1	chr5Lx988555772	ProperStrand	1	chr15	55572148	55572229	protein_coding	Sntb1	intron	ENSMUSG00000060429	NonProperStrand	31	1	-inf
chr4	25270443	25270519	LINE	L1_Mur2	L1	chr4L1_Mur225270334	NonProperStrand	2	chr4	25270263	25270329	LINE	Lx4A	L1	chr4Lx4A25269045	ProperStrand	2	2	-inf
chr5	44217351	44217414	protein_coding	Bst1	intron	ENSMUSG00000029082	NonProperStrand	11	chr5	114851974	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-12.7679
chr14	118919949	118920038	protein_coding	Abcc4	intron	ENSMUSG00000032849	ProperStrand	24	chr5	45010205	45010305	protein_coding	Ldb2	intron	ENSMUSG00000039706	ProperStrand	20	1	-16.1390
chr1	89513445	89513504	LTR	ORR1E	MaLR	chr1ORR1E89513099	NonProperStrand	5	chr10	28145744	28145811	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	1	-15.3563
chr10	128437390	128438134	LTR	MTA_Mm	MaLR	chr10MTA_Mm128438063	ProperStrand	1	chr17	39846508	39846558	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847324	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	32297034	32297140	protein_coding	Mettl6	intron	ENSMUSG00000021891	NonProperStrand	8	1	-3.3803
chr17	39847155	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	88643063	88643105	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n88642860	NonProperStrand	2	1	-6.5615
chr17	39847028	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	185344801	185344821	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n185344730	NonProperStrand	1	1	-inf
chr19	56937381	56937427	protein_coding	Tdrd1	intron	ENSMUSG00000025081	NonProperStrand	9	chr4	48668681	48668730	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	114	1	-14.6242
chr11	98967037	98967137	LINE	L2b	L2	chr11L2b98966988	NonProperStrand	2	chr9	65710784	65710874	protein_coding	Trip4	intron	ENSMUSG00000032386	ProperStrand	84	2	-inf
chr2	119383457	119392897	protein_coding	1500003O03Rik	intron	ENSMUSG00000014077	NonProperStrand	37	chr13	97190577	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0707
chr17	65290737	65290837	LINE	L1_Rod	L1	chr17L1_Rod65290640	ProperStrand	1	chr17	64324252	64324342	protein_coding	Fer	intron	ENSMUSG00000000127	NonProperStrand	23	1	-inf
chr10	59200349	59200377	protein_coding	Micu1	intron	ENSMUSG00000020111	NonProperStrand	33	chr2	70662857	70662965	protein_coding	Tlk1	intron	ENSMUSG00000041997	NonProperStrand	15	2	-inf
chr12	78350927	78351027	protein_coding	Fut8	intron	ENSMUSG00000021065	NonProperStrand	7	chr9	123461804	123462023	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	2	-inf
chr15	59498188	59498237	LTR	MTD	MaLR	chr15MTD59498048	ProperStrand	1	chr17	39847346	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847657	39847695	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	100312307	100312335	lincRNA	Gm12474	intron	ENSMUSG00000053957	NonProperStrand	1	1	-inf
chr9	83234243	83234344	LTR	RMER6C	ERVK	chr9RMER6C83234093	NonProperStrand	2	chr9	83234423	83234513	LTR	RMER6C	ERVK	chr9RMER6C83234414	NonProperStrand	2	2	-inf
chr9	110281274	110281345	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr9	118674949	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	2	-3.4262
chr11	23339032	23339062	protein_coding	Usp34	intron	ENSMUSG00000056342	ProperStrand	153	chr4	119132148	119132234	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	513	2	-9.5681
chr16	91317444	91317544	SINE	B4	B4	chr16B491317457	ProperStrand	1	chr16	91317089	91317179	SINE	B4A	B4	chr16B4A91317111	ProperStrand	1	1	-inf
chr2	91355864	91355964	SINE	B4	B4	chr2B491355829	NonProperStrand	1	chr2	91356086	91356176	SINE	PB1D10	Alu	chr2PB1D1091356069	NonProperStrand	1	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr14	27087460	27088031	protein_coding	Gm10391	utr3	ENSMUSG00000072672	ProperStrand	3	1	-12.3050
chr10	81297320	81297398	LTR	IAPEz-int	ERVK	chr10IAPEz-int81292780	NonProperStrand	28	chr2	32888482	32888520	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-10.4396
chr3	69740225	69740335	LTR	ORR1B2	MaLR	chr3ORR1B269739999	ProperStrand	1	chrX	165488578	165488597	protein_coding	Arhgap6	intron	ENSMUSG00000031355	ProperStrand	6	1	-inf
chr7	11945863	11945953	LINE	L1Md_A	L1	chr7L1Md_A11942852	NonProperStrand	2	chr7	11928346	11928446	LINE	Lx4B	L1	chr7Lx4B11927895	ProperStrand	1	1	-inf
chr4	150241571	150241615	protein_coding	Errfi1	utr3	ENSMUSG00000028967	ProperStrand	111	chr5	115490315	115490369	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	2	-12.6529
chr17	39848379	39848479	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	88445276	88445368	protein_coding	Arhgef2	intron	ENSMUSG00000028059	ProperStrand	3	2	-12.6633
chr3	90485233	90485333	LTR	MER70B	ERVL	chr3MER70B90485106	ProperStrand	4	chr16	31960614	31960704	protein_coding	Ncbp2	intron	ENSMUSG00000022774	ProperStrand	14	4	-inf
chr6	3201470	3201566	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	88165484	88165503	protein_coding	Kcnk12	intron	ENSMUSG00000050138	ProperStrand	32	1	-4.0529
chr1	30847144	30847200	LTR	LTR88b	Gypsy?	chr1LTR88b30847139	ProperStrand	1	chr2	5379271	5379334	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	37249801	37249901	SINE	B2_Mm2	B2	chr17B2_Mm237249697	ProperStrand	1	chr17	37316781	37316871	processed_transcript	Gm20497	.	ENSMUSG00000092403	NonProperStrand	1	1	-inf
chr9	48987779	48987875	LINE	Lx8	L1	chr9Lx848987614	ProperStrand	1	chr9	110281288	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr6	3201430	3201520	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr2	103452572	103452672	protein_coding	Abtb2	intron	ENSMUSG00000032724	NonProperStrand	27	4	-14.1514
chr3	63266852	63266952	LINE	Lx5	L1	chr3Lx563266213	ProperStrand	1	chr3	63267044	63267134	LINE	Lx7	L1	chr3Lx763267017	NonProperStrand	1	1	-inf
chr17	4082415	4082507	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr10	127518868	127518927	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	148	1	-5.8757
chr4	130378075	130378099	protein_coding-noncoding	Sdc3	utr5	ENSMUSG00000025743	ProperStrand	5	chr4	130368321	130378076	protein_coding	Sdc3	intron	ENSMUSG00000025743	ProperStrand	14	1	-20.0849
chr7	140411834	140411934	LINE	L1_Mur3	L1	chr7L1_Mur3140411697	NonProperStrand	1	chr7	140411538	140411628	LINE	Lx7	L1	chr7Lx7140410242	NonProperStrand	1	1	-inf
chr17	39847208	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	70019183	70019289	lincRNA	Gm17406	exon	ENSMUSG00000091654	NonProperStrand	7	2	-6.4010
chr1	35997401	35997501	SINE	B1_Mur2	Alu	chr1B1_Mur235997328	NonProperStrand	1	chr1	35997226	35997316	SINE	B4	B4	chr1B435997138	NonProperStrand	1	1	-inf
chr11	54458737	54458859	protein_coding	Rapgef6	intron	ENSMUSG00000037533	ProperStrand	26	chr3	103962782	103962799	protein_coding	Magi3	intron	ENSMUSG00000052539	ProperStrand	19	1	-16.0482
chr6	94211975	94212030	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	chr17	23820603	23820668	protein_coding	Cldn9	utr5	ENSMUSG00000066720	NonProperStrand	76	1	-5.8195
chr7	28785691	28785857	LINE	Lx7	L1	chr7Lx728785560	ProperStrand	1	chr9	123461931	123461987	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	7209579	7209679	LINE	L1_Mur3	L1	chr13L1_Mur37208951	NonProperStrand	2	chr13	6560849	6560939	protein_coding	Pitrm1	intron	ENSMUSG00000021193	NonProperStrand	13	2	-inf
chr6	125071963	125072063	protein_coding	Chd4	intron	ENSMUSG00000063870	ProperStrand	17	chr6	125071747	125071837	snoRNA	ENSMUSG00000088208_SCARNA11	.	ENSMUSG00000088208	ProperStrand	1	1	-inf
chr5	29641782	29641863	protein_coding	Lmbr1	intron	ENSMUSG00000010721	NonProperStrand	89	chr11	80268615	80268686	protein_coding	Psmd11	intron	ENSMUSG00000017428	ProperStrand	25	1	-13.0033
chr4	43880065	43880154	LINE	L1MC1	L1	chr4L1MC143879924	NonProperStrand	1	chr17	45567849	45567897	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-inf
chr7	94591535	94591625	protein_coding	Tyr	intron	ENSMUSG00000004651	NonProperStrand	1	chr14	33968078	33968178	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr11	120954150	120954170	SINE	B1_Mm	Alu	chr11B1_Mm120954142	NonProperStrand	2	chr11	120949146	120954292	SINE	ID_B1	B4	chr11ID_B1120951448	NonProperStrand	2	2	-inf
chr11	119204739	119204829	protein_coding	Sgsh	utr3	ENSMUSG00000005043	ProperStrand	18	chr11	119204635	119204735	protein_coding	Card14	intron	ENSMUSG00000013483	NonProperStrand	31	3	-inf
chr17	35244230	35244512	LTR	MTE2a	MaLR	chr17MTE2a35244437	ProperStrand	2	chr17	35244520	35247008	protein_coding	Ly6g5c	intron	ENSMUSG00000034482	ProperStrand	13	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	17625993	17641751	protein_coding-noncoding	Smpd4	utr5	ENSMUSG00000005899	ProperStrand	3	2	-8.0300
chr5	146261170	146261213	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	87281554	87281571	pseudogene	Gm11489	.	ENSMUSG00000083894	ProperStrand	1	1	-inf
chr6	49236483	49236586	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr2	5379247	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-3.8144
chr15	35504086	35504142	protein_coding	Vps13b	intron	ENSMUSG00000037646	ProperStrand	128	chr16	20109287	20109352	protein_coding	Klhl24	intron	ENSMUSG00000062901	ProperStrand	54	1	-10.7131
chr13	53243731	53243809	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	chr16	67601327	67601398	protein_coding	Cadm2	intron	ENSMUSG00000064115	NonProperStrand	20	1	-12.2824
chr6	116059106	116059142	protein_coding	Tmcc1	intron	ENSMUSG00000030126	ProperStrand	59	chr4	135872963	135873043	protein_coding	Hnrnpr	intron	ENSMUSG00000066037	NonProperStrand	5	1	-17.3012
chr9	6363180	6363270	protein_coding	Pdgfd	intron	ENSMUSG00000032006	ProperStrand	12	chr6	100540180	100540280	protein_coding	Shq1	intron	ENSMUSG00000035378	NonProperStrand	4	1	-inf
chr11	54777869	54777931	SINE	B4	B4	chr11B454777770	NonProperStrand	2	chr15	25886305	25886357	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	163	1	-17.4613
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr11	93902798	93902930	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	1	-9.7014
chr4	127175479	127175515	LTR	MT2A	ERVL	chr4MT2A127175176	ProperStrand	1	chr6	49236470	49236599	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-inf
chr12	64970722	64970787	LINE	L1_Mm	L1	chr12L1_Mm64970694	ProperStrand	2	chr2	22744837	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-14.2543
chr15	96592471	96592490	LINE	Lx9	L1	chr15Lx996592177	ProperStrand	1	chr17	39846352	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	23873271	23873385	protein_coding	Smap1	intron	ENSMUSG00000026155	ProperStrand	16	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-9.2358
chr16	23111309	23111377	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr19	4517181	4517259	protein_coding	Pcx	intron	ENSMUSG00000024892	ProperStrand	54	1	-10.1216
chr12	22847004	22847104	SINE	B1_Mus2	Alu	chr12B1_Mus222846941	ProperStrand	1	chr12	23129495	23129585	Unknown	MurSatRep1	Unknown	chr12MurSatRep123128835	NonProperStrand	2	1	-inf
chr14	54248036	54248118	LINE	L1_Mus4	L1	chr14L1_Mus454247967	ProperStrand	7	chr9	123462029	123462154	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr16	13369107	13369130	protein_coding	Mkl2	intron	ENSMUSG00000009569	NonProperStrand	14	chr17	30559182	30559255	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-10.1885
chr11	20411323	20411349	LTR	IAPEz-int	ERVK	chr11IAPEz-int20411298	ProperStrand	1	chr9	15314889	15314925	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-inf
chr1	57463673	57463773	protein_coding	9430016H08Rik	exon	ENSMUSG00000025971	ProperStrand	1	chr1	57463120	57463210	protein_coding	1110034B05Rik	intron	ENSMUSG00000048495	NonProperStrand	2	1	-inf
chr4	8561187	8572579	SINE	RSINE1	B4	chr4RSINE18572491	NonProperStrand	4	chr15	78438200	78438300	protein_coding	Cyth4	intron	ENSMUSG00000018008	ProperStrand	28	4	-inf
chr17	39846307	39846407	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	85037915	85038388	antisense	Gm13716	.	ENSMUSG00000086905	ProperStrand	3	1	-4.3017
chr4	59813725	59813804	protein_coding	1110054O05Rik	intron	ENSMUSG00000038544	NonProperStrand	25	chr7	25275529	25275582	protein_coding	Cadm4	intron	ENSMUSG00000054793	ProperStrand	89	1	-13.0026
chr17	34165162	34165262	processed_transcript	Gm20427	.	ENSMUSG00000092595	NonProperStrand	1	chr17	34133950	34134040	protein_coding-noncoding	H2-K1	utr3	ENSMUSG00000061232	NonProperStrand	1	1	-inf
chr1	151361557	151363162	LTR	IAPLTR1_Mm	ERVK	chr1IAPLTR1_Mm151361409	NonProperStrand	2	chr19	31306442	31306462	protein_coding	Prkg1	intron	ENSMUSG00000052920	ProperStrand	30	1	-21.6628
chr2	121307442	121307479	LINE	Lx2	L1	chr2Lx2121307384	ProperStrand	1	chr8	108869035	108869082	lincRNA	Gm17245	intron	ENSMUSG00000067626	NonProperStrand	77	1	-inf
chr8	79713160	79719676	protein_coding	Nr3c2	intron	ENSMUSG00000031618	ProperStrand	140	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-6.1695
chr17	39847327	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	96173621	96173688	LTR	RLTR6-int	ERV1	chr3RLTR6-int96168524	NonProperStrand	6	1	-3.9545
chr8	95693711	95693801	protein_coding-noncoding	Ces1d	utr3	ENSMUSG00000056973	NonProperStrand	1	chr8	95693832	95693932	protein_coding	Ces1d	intron	ENSMUSG00000056973	NonProperStrand	52	1	-inf
chr17	46203005	46203104	LINE	L1M4c	L1	chr17L1M4c46202934	NonProperStrand	3	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-14.2078
chr13	55535932	55536022	LTR	RLTR10-int	ERVK	chr13RLTR10-int55535938	ProperStrand	2	chrX	101705547	101705647	SINE	B1_Mur2	Alu	chrXB1_Mur2101705537	NonProperStrand	2	1	-19.8939
chr17	39848507	39848744	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr17	56005867	56005907	protein_coding	Zfp119a	exon	ENSMUSG00000057835	ProperStrand	21	4	-12.0523
chr4	107583010	107583059	protein_coding	Cpt2	intron	ENSMUSG00000028607	NonProperStrand	11	chr6	128839046	128839148	protein_coding	Clec2i	intron	ENSMUSG00000030365	ProperStrand	18	1	-18.0655
chr17	39846657	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	63460734	63460786	protein_coding	Aagab	intron	ENSMUSG00000037257	ProperStrand	1	1	-inf
chr11	6528056	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	35	chr5	146261039	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-6.1204
chr14	53816471	53816561	LINE	L1_Mur3	L1	chr14L1_Mur353816463	ProperStrand	1	chr14	53816995	53817095	LINE	Lx8	L1	chr14Lx853816927	ProperStrand	1	1	-inf
chr9	108337412	108337512	SINE	B3	B2	chr9B3108337427	NonProperStrand	1	chr9	108337298	108337388	SINE	RSINE1	B4	chr9RSINE1108337268	NonProperStrand	1	1	-inf
chr17	73161969	73162069	SINE	B3A	B2	chr17B3A73161956	ProperStrand	1	chr17	73161769	73161859	SINE	ID4	ID	chr17ID473161788	NonProperStrand	1	1	-inf
chr9	43647732	43647832	SINE	B1_Mur1	Alu	chr9B1_Mur143647733	NonProperStrand	1	chr10	122565815	122565905	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	1	-inf
chr5	146261018	146261041	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	46610005	46610143	protein_coding	Ttbk1	intron	ENSMUSG00000015599	ProperStrand	78	1	-4.5574
chr18	23674193	23674283	protein_coding	Dtna	intron	ENSMUSG00000024302	NonProperStrand	10	chr18	23724413	23724513	protein_coding	Dtna	intron	ENSMUSG00000024302	ProperStrand	32	1	-16.9081
chr4	149120028	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr15	83149667	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	4	-15.3358
chr14	78988346	78988411	protein_coding	Dgkh	intron	ENSMUSG00000034731	NonProperStrand	61	chr7	141322575	141322950	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-9.7745
chr10	42473813	42473858	antisense	Gm15199	.	ENSMUSG00000086428	NonProperStrand	4	chr11	75737877	75737912	protein_coding	Rph3al	intron	ENSMUSG00000020847	ProperStrand	7	1	-inf
chr5	145272360	145272443	LINE	L1Md_A	L1	chr5L1Md_A145272303	NonProperStrand	1	chr5	145271168	145271242	SINE	B4A	B4	chr5B4A145271058	ProperStrand	1	1	-inf
chr15	14367512	14367602	LTR	MERVL-int	ERVL	chr15MERVL-int14362904	ProperStrand	1	chr15	14368467	14368567	LTR	MT2_Mm	ERVL	chr15MT2_Mm14368355	ProperStrand	1	1	-inf
chr14	79188986	79189076	LTR	IAPEz-int	ERVK	chr14IAPEz-int79188050	NonProperStrand	1	chr14	79189266	79189366	LTR	IAPEz-int	ERVK	chr14IAPEz-int79189168	NonProperStrand	1	1	-inf
chr19	10226594	10226685	LINE	L1_Mur3	L1	chr19L1_Mur310226584	NonProperStrand	2	chr19	10226468	10226568	LINE	Lx7	L1	chr19Lx710225622	ProperStrand	2	2	-inf
chr3	86140648	86140675	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	chr12	89348356	89348373	protein_coding	Gm8607	intron	ENSMUSG00000092138	NonProperStrand	5	1	-16.3120
chr12	54900025	54900087	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr3	62159315	62159351	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	1	-11.2048
chrX	144293424	144293515	LINE	Lx3B	L1	chrXLx3B144293447	ProperStrand	2	chr12	101952000	101952051	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	2	-inf
chr2	121257678	121257768	protein_coding-noncoding	Pdia3	utr5	ENSMUSG00000027248	ProperStrand	1	chr2	121257797	121257897	protein_coding	Pdia3	intron	ENSMUSG00000027248	ProperStrand	2	1	-inf
chr3	122224398	122224430	protein_coding	Bcar3	intron	ENSMUSG00000028121	NonProperStrand	10	chr3	135232166	135232230	protein_coding	Manba	intron	ENSMUSG00000028164	ProperStrand	20	1	-17.9669
chr17	39847676	39847692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	116012341	116012423	protein_coding	Rplp0	intron	ENSMUSG00000067274	ProperStrand	1	1	-inf
chr17	4082200	4082261	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	1	-8.0662
chr10	128511002	128511497	LINE	L1Md_A	L1	chr10L1Md_A128511444	NonProperStrand	8	chr13	44869576	44869645	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.5479
chr15	14427304	14427394	LINE	L1Md_F2	L1	chr15L1Md_F214423708	NonProperStrand	2	chr15	14426884	14426984	LINE	L1Md_F2	L1	chr15L1Md_F214423708	ProperStrand	1	1	-inf
chr7	12930796	12930818	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr13	97953395	97953521	protein_coding	Hexb	intron	ENSMUSG00000021665	ProperStrand	8	1	-15.5941
chr1	89671202	89671266	protein_coding	Atg16l1	intron	ENSMUSG00000026289	ProperStrand	119	chr1	89708049	89708069	protein_coding	Sag	intron	ENSMUSG00000056055	ProperStrand	125	1	-9.1754
chr16	10974748	10974860	protein_coding	Litaf	intron	ENSMUSG00000022500	ProperStrand	55	chr5	123804974	123805022	protein_coding	Bcl7a	intron	ENSMUSG00000029438	ProperStrand	19	1	-14.5324
chr5	34699555	34699608	SINE	B1F1	Alu	chr5B1F134699495	NonProperStrand	3	chr18	5659947	5660015	protein_coding	Zeb1	intron	ENSMUSG00000024238	ProperStrand	44	1	-19.0086
chr17	39846811	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	122262504	122262593	SINE	ID_B1	B4	chr14ID_B1122262490	ProperStrand	1	1	-inf
chr18	49756371	49756473	LINE	L2	L2	chr18L249756059	ProperStrand	1	chr16	35928014	35928104	protein_coding	Dtx3l	utr3	ENSMUSG00000049502	ProperStrand	3	1	-inf
chr6	3201474	3201531	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr5	114409962	114410056	protein_coding	Ssh1	intron	ENSMUSG00000042121	NonProperStrand	37	1	-3.7789
chr12	77440868	77440968	LINE	L1_Mur3	L1	chr12L1_Mur377440733	ProperStrand	1	chr12	77441124	77441214	SINE	B1_Mus2	Alu	chr12B1_Mus277441128	ProperStrand	1	1	-inf
chr4	43492791	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr2	167065280	167065358	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-6.4980
chr2	5840922	5844839	protein_coding	Dhtkd1	intron	ENSMUSG00000025815	ProperStrand	28	chr2	5379238	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-9.8466
chr6	134183221	134183311	antisense	Gm17089	.	ENSMUSG00000092134	ProperStrand	1	chr6	134183109	134183209	protein_coding	Etv6	intron	ENSMUSG00000030199	NonProperStrand	6	1	-inf
chr3	34054318	34056347	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	107	chr16	5048301	5048800	protein_coding	Glyr1	intron	ENSMUSG00000022536	ProperStrand	66	1	-10.6683
chr5	87705691	87705781	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int87705277	NonProperStrand	1	chr10	86169826	86169926	protein_coding	BC030307	intron	ENSMUSG00000044937	NonProperStrand	4	1	-inf
chr14	62109431	62109521	LINE	Lx8	L1	chr14Lx862109285	NonProperStrand	1	chr7	47188345	47188445	SINE	B3A	B2	chr7B3A47188341	ProperStrand	22	1	-inf
chr2	102100304	102100394	DNA	Looper	PiggyBac	chr2Looper102100303	ProperStrand	3	chr2	102100175	102100275	SINE	RSINE1	B4	chr2RSINE1102100184	NonProperStrand	3	3	-inf
chrX	19454540	19454640	LTR	MERVL_2A-int	ERVL	chrXMERVL_2A-int19454525	ProperStrand	1	chrX	19454411	19454501	LTR	MT2B	ERVL	chrXMT2B19454124	ProperStrand	1	1	-inf
chr8	43146699	43146737	LINE	L1Md_F2	L1	chr8L1Md_F243142991	NonProperStrand	9	chr12	112820506	112820593	protein_coding	Mark3	intron	ENSMUSG00000007411	NonProperStrand	25	1	-17.7564
chr17	39847661	39847703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	77285165	77285225	protein_coding	Ankrd13b	utr3	ENSMUSG00000037907	NonProperStrand	4	1	-3.7035
chr11	53747623	53747723	SINE	B1_Mus1	Alu	chr11B1_Mus153747625	ProperStrand	1	chr11	53747167	53747257	SINE	RSINE1	B4	chr11RSINE153747130	ProperStrand	1	1	-inf
chr10	117089809	117089864	protein_coding	Cpm	intron	ENSMUSG00000020183	NonProperStrand	48	chr13	113997122	113997189	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	351	1	-8.9348
chr6	94266603	94266722	LTR	ORR1A2	MaLR	chr6ORR1A294266442	ProperStrand	2	chr9	123462082	123462112	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-inf
chr16	17464582	17464682	protein_coding	Crkl	intron	ENSMUSG00000006134	ProperStrand	44	chr16	16877998	16878088	protein_coding	Top3b	utr5	ENSMUSG00000022779	NonProperStrand	2	1	-19.6342
chr7	68147063	68147179	LINE	Lx3_Mus	L1	chr7Lx3_Mus68146918	ProperStrand	1	chr17	39847958	39847974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	102829371	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr11	44564071	44564136	protein_coding	Ebf1	intron	ENSMUSG00000057098	ProperStrand	125	1	-8.4058
chr15	94200577	94200596	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	43	chr9	67227417	67227467	protein_coding	Tln2	intron	ENSMUSG00000052698	ProperStrand	110	1	-11.4765
chr12	81761552	81761660	protein_coding	Slc39a9	intron	ENSMUSG00000048833	NonProperStrand	63	chr2	163082560	163082607	protein_coding	Tox2	intron	ENSMUSG00000074607	ProperStrand	369	1	-8.2898
chr7	5409470	5409514	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	chr1	23901603	23901672	protein_coding	Smap1	intron	ENSMUSG00000026155	ProperStrand	16	1	-17.6629
chr5	121331857	121332965	protein_coding-noncoding	Oas1g	exon	ENSMUSG00000066861	NonProperStrand	8	chr5	121331728	121331818	protein_coding	Oas1g	intron	ENSMUSG00000066861	NonProperStrand	8	8	-inf
chr8	13164836	13164926	protein_coding	Lamp1	intron	ENSMUSG00000031447	ProperStrand	46	chr1	132630346	132630446	protein_coding	AA986860	intron	ENSMUSG00000042510	NonProperStrand	13	1	-15.6851
chr7	34178623	34178713	LTR	RMER20A	ERVK	chr7RMER20A34178648	ProperStrand	1	chr7	34178514	34178614	SINE	B3	B2	chr7B334178508	NonProperStrand	1	1	-inf
chr5	45742082	45742171	LINE	L1Md_F2	L1	chr5L1Md_F245736999	NonProperStrand	8	chr17	39843817	39843846	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-6.9216
chr3	107620136	107620236	DNA	MER5C1	MER1_type	chr3MER5C1107620125	ProperStrand	1	chr3	107620252	107620342	LINE	L1MB8	L1	chr3L1MB8107620263	ProperStrand	1	1	-inf
chr4	117153990	117154062	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	chr12	105031125	105031180	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	1	-6.4465
chr12	99545802	99545880	LINE	L2	L2	chr12L299545479	NonProperStrand	1	chr17	39846952	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	14889447	14889547	LINE	L1_Mur3	L1	chr10L1_Mur314889294	NonProperStrand	1	chr10	14889665	14889755	LINE	L1_Mur3	L1	chr10L1_Mur314889685	NonProperStrand	1	1	-inf
chr10	116419603	116419645	LTR	ORR1D1	MaLR	chr10ORR1D1116419587	ProperStrand	1	chr11	115640871	115640933	protein_coding	2310067B10Rik	intron	ENSMUSG00000020747	NonProperStrand	47	1	-inf
chr11	109011813	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr15	53226413	53226507	LTR	RMER19B	ERVK	chr15RMER19B53225910	ProperStrand	4	1	-11.7441
chr10	104623702	104623792	LTR	ORR1D2	MaLR	chr10ORR1D2104623650	ProperStrand	1	chr10	104624007	104624107	SINE	B3A	B2	chr10B3A104624010	ProperStrand	1	1	-inf
chr10	127231389	127231489	LTR	IAPEY3-int	ERVK	chr10IAPEY3-int127229959	NonProperStrand	6	chr10	127231557	127231647	LTR	IAPEY3-int	ERVK	chr10IAPEY3-int127231408	NonProperStrand	2	2	-inf
chr16	19883802	19883924	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	chr11	53649099	53649203	protein_coding	Gm12216	intron	ENSMUSG00000081769	ProperStrand	26	1	-10.5903
chr15	34339118	34339207	protein_coding	Matn2	intron	ENSMUSG00000022324	NonProperStrand	33	chr18	65591637	65591696	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	2	-16.5634
chr14	16530005	16530023	DNA	URR1A	MER1_type	chr14URR1A16529898	ProperStrand	1	chr15	62195752	62195846	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	1	-inf
chr12	78350926	78350993	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr17	12890429	12890782	protein_coding	Igf2r	intron	ENSMUSG00000023830	ProperStrand	54	1	-6.1036
chr17	24720684	24720990	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr10	119233544	119233604	protein_coding	Grip1	intron	ENSMUSG00000034813	NonProperStrand	73	1	-8.6091
chr18	37762606	37762696	LINE	L1Md_F2	L1	chr18L1Md_F237762523	NonProperStrand	1	chr18	37762966	37763066	LTR	RMER4A	ERVK	chr18RMER4A37762879	ProperStrand	1	1	-inf
chr17	39846759	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	94740758	94740804	protein_coding	Selenbp1	intron	ENSMUSG00000068874	NonProperStrand	3	1	-4.3017
chr1	6114136	6114226	LINE	L1_Mus1	L1	chr1L1_Mus16110439	ProperStrand	1	chr1	6114438	6114538	LINE	L1_Mus1	L1	chr1L1_Mus16114449	ProperStrand	1	1	-inf
chr11	100493590	100493942	protein_coding	Zfp385c	intron	ENSMUSG00000014198	ProperStrand	87	chr11	48803138	48803205	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-8.5252
chr11	109011655	109011707	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	89681194	89681237	snoRNA	ENSMUSG00000089281_Scarna6	.	ENSMUSG00000089281	ProperStrand	1	1	-inf
chr14	42156922	42157012	LINE	L1_Mur1	L1	chr14L1_Mur142156889	NonProperStrand	1	chr14	42156742	42156842	LINE	Lx3A	L1	chr14Lx3A42156531	ProperStrand	1	1	-inf
chr10	4374751	4387891	LINE	L1Md_F2	L1	chr10L1Md_F24381874	ProperStrand	2	chr10	4387959	4388019	LINE	L1Md_F2	L1	chr10L1Md_F24382964	ProperStrand	9	1	-inf
chr17	39843361	39843413	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr9	20891616	20891718	protein_coding	Raver1	intron	ENSMUSG00000010205	NonProperStrand	43	1	-3.1550
chr13	97190553	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr15	98651317	98651493	protein_coding	Prkag1	intron	ENSMUSG00000067713	ProperStrand	52	1	-5.4010
chr10	78410987	78411484	LINE	Lx4A	L1	chr10Lx4A78411304	ProperStrand	5	chr8	122447088	122447109	protein_coding	Usp10	intron	ENSMUSG00000031826	ProperStrand	9	1	-inf
chr7	16368597	16370332	LINE	L1_Mur2	L1	chr7L1_Mur216368608	ProperStrand	8	chr7	16370356	16370447	LINE	L1_Mur3	L1	chr7L1_Mur316370361	NonProperStrand	18	6	-22.0263
chr10	80054702	80054802	SINE	B1F	Alu	chr10B1F80054703	NonProperStrand	3	chr10	80054585	80054675	SINE	B1_Mus1	Alu	chr10B1_Mus180054559	NonProperStrand	2	1	-20.2824
chr17	39847188	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	107426421	107426461	protein_coding	Cacna2d2	exon	ENSMUSG00000010066	ProperStrand	6	1	-3.9545
chr13	18737835	18737925	LINE	L1_Mus4	L1	chr13L1_Mus418737528	NonProperStrand	1	chr13	18738037	18738137	LTR	RLTR13D5	ERVK	chr13RLTR13D518738024	ProperStrand	1	1	-inf
chr8	84990411	84990487	LINE	L1_Mus3	L1	chr8L1_Mus384990057	NonProperStrand	1	chr17	39846954	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	139224619	139224700	protein_coding	Tas1r2	intron	ENSMUSG00000028738	ProperStrand	90	chr11	33357472	33357553	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-6.6378
chr13	29222833	29222923	LINE	Lx5	L1	chr13Lx529222744	ProperStrand	1	chr13	29223013	29223113	LINE	Lx5	L1	chr13Lx529222932	ProperStrand	1	1	-inf
chr10	57071788	57071888	LINE	Lx4A	L1	chr10Lx4A57071805	NonProperStrand	1	chr10	57071526	57071616	LINE	Lx7	L1	chr10Lx757070283	ProperStrand	1	1	-inf
chr11	116545890	116546463	protein_coding-noncoding	St6galnac2	utr3	ENSMUSG00000057286	ProperStrand	22	chr11	116545364	116545863	protein_coding	St6galnac2	intron	ENSMUSG00000057286	ProperStrand	31	3	-inf
chr17	39847551	39847604	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	142934961	142935030	LTR	RLTR13B1	ERVK	chr6RLTR13B1142934567	ProperStrand	2	1	-5.4040
chr3	68499896	68499970	protein_coding	Il12a	intron	ENSMUSG00000027776	ProperStrand	7	chr4	116626982	116627066	protein_coding	Zswim5	intron	ENSMUSG00000033948	NonProperStrand	146	1	-14.6699
chr6	49236504	49236554	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr6	29535731	29535829	protein_coding-noncoding	Tnpo3	utr3	ENSMUSG00000012535	NonProperStrand	2	1	-16.7719
chr2	90395138	90395168	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr8	25068568	25068641	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	246	1	-6.9093
chr2	20861116	20861206	protein_coding	Arhgap21	intron	ENSMUSG00000036591	ProperStrand	30	chr2	21703722	21703822	protein_coding	Gpr158	intron	ENSMUSG00000045967	NonProperStrand	11	1	-16.8917
chr1	71033992	71034100	LINE	L1_Mus2	L1	chr1L1_Mus271033960	ProperStrand	3	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr9	64214472	64214562	SINE	B1_Mur1	Alu	chr9B1_Mur164214412	ProperStrand	1	chr9	64212634	64214402	SINE	ID_B1	B4	chr9ID_B164212598	NonProperStrand	1	1	-inf
chr12	43595993	43596083	LINE	L1_Mur3	L1	chr12L1_Mur343595247	ProperStrand	1	chr12	43596345	43596445	LINE	L1_Mur3	L1	chr12L1_Mur343596103	ProperStrand	1	1	-inf
chr8	116650277	116650349	LINE	Lx8	L1	chr8Lx8116649972	NonProperStrand	13	chr2	164798468	164798520	protein_coding	Slc12a5	intron	ENSMUSG00000017740	NonProperStrand	26	1	-16.8837
chr3	135661334	135661382	LTR	MTEa-int	MaLR	chr3MTEa-int135660282	ProperStrand	1	chr3	135660246	135660293	LTR	ORR1E	MaLR	chr3ORR1E135660086	ProperStrand	1	1	-inf
chr17	39846451	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	8564100	8564148	Low_complexity	GA-rich	Low_complexity	chr3GA-rich8564082	ProperStrand	1	1	-inf
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr13	97190550	97190631	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	9	-11.0905
chr17	39847037	39847139	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	26200518	26200535	protein_coding	Gpsm1	intron	ENSMUSG00000026930	NonProperStrand	1	1	-inf
chr9	24057103	24057124	protein_coding	Npsr1	intron	ENSMUSG00000043659	ProperStrand	6	chr11	95675612	95678088	protein_coding	Zfp652	intron	ENSMUSG00000075595	ProperStrand	82	1	-16.1815
chr12	57112140	57112159	SINE	B4A	B4	chr12B4A57111957	NonProperStrand	5	chr5	114851974	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-14.4719
chr13	55312429	55312514	protein_coding	Nsd1	intron	ENSMUSG00000021488	ProperStrand	81	chr12	76461066	76461109	protein_coding	Rhoj	intron	ENSMUSG00000046768	ProperStrand	46	1	-11.9546
chr17	39847611	39847668	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	74415476	74415543	protein_coding	Gm216	exon	ENSMUSG00000073650	ProperStrand	2	1	-5.4040
chr4	151301678	151301768	LINE	L1Md_F3	L1	chr4L1Md_F3151301596	NonProperStrand	1	chr12	82211597	82211697	protein_coding	Smoc1	intron	ENSMUSG00000021136	NonProperStrand	7	1	-inf
chr11	116569796	116569852	LTR	RMER16	ERVK	chr11RMER16116569683	NonProperStrand	7	chr1	181946030	181946116	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	1	-12.4515
chr10	128734089	128735872	LTR	MTB-int	MaLR	chr10MTB-int128733847	NonProperStrand	1	chr10	128733311	128733591	SINE	B1_Mm	Alu	chr10B1_Mm128733242	NonProperStrand	2	1	-inf
chr17	66427763	66427853	SINE	B1_Mur1	Alu	chr17B1_Mur166427748	ProperStrand	2	chr17	66427598	66427698	SINE	B3	B2	chr17B366427543	NonProperStrand	3	2	-inf
chr12	40349834	40349850	LINE	L1Md_Gf	L1	chr12L1Md_Gf40349296	NonProperStrand	2	chr9	123461994	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr12	111112617	111112669	LINE	Lx8	L1	chr12Lx8111112390	NonProperStrand	1	chr17	39847160	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr14	56659108	56659208	LTR	ERVL-E-int	ERVL	chr14ERVL-E-int56659069	ProperStrand	1	chr14	56659352	56659442	LTR	ERVL-E-int	ERVL	chr14ERVL-E-int56659295	ProperStrand	1	1	-inf
chr17	39847842	39847896	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	114884844	114884888	protein_coding	Gm11710	intron	ENSMUSG00000069609	NonProperStrand	2	1	-5.4040
chr4	147722823	147722883	LINE	L1MC1	L1	chr4L1MC1147722792	NonProperStrand	1	chr11	72260260	72260318	protein_coding	Mybbp1a	intron	ENSMUSG00000040463	NonProperStrand	1	1	-inf
chrX	31231073	31231098	LINE	L1Md_T	L1	chrXL1Md_T31230268	ProperStrand	1	chr4	5681531	5681566	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	1	-inf
chr17	39848099	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	119774262	119774329	lincRNA	2310014F06Rik	intron	ENSMUSG00000085945	ProperStrand	10	1	-4.7139
chr17	39843843	39843877	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	12919616	12919660	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	57	1	-3.0721
chr11	22607537	22607669	LINE	L1_Mus1	L1	chr11L1_Mus122607423	ProperStrand	1	chr8	106715957	106715974	protein_coding	Bean1	intron	ENSMUSG00000031872	ProperStrand	66	1	-inf
chr9	123461801	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	108012524	108012659	protein_coding	Atxn7l2	intron	ENSMUSG00000048997	ProperStrand	4	1	-6.3300
chr12	54696850	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr9	78480569	78480607	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-5.8894
chr4	114964804	114964836	LINE	L1_Mus3	L1	chr4L1_Mus3114964396	NonProperStrand	2	chr2	90735849	90735938	protein_coding	Ndufs3	intron	ENSMUSG00000005510	NonProperStrand	8	1	-23.4058
chr17	39846660	39846754	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	46819179	46822835	Unknown	MurSatRep1	Unknown	chr7MurSatRep146818972	ProperStrand	1	1	-inf
chr4	137770359	137770381	SINE	B1_Mur2	Alu	chr4B1_Mur2137770347	ProperStrand	1	chr4	137778946	137779049	protein_coding	Hp1bp3	intron	ENSMUSG00000028759	NonProperStrand	73	1	-inf
chr17	29626629	29626721	lincRNA	Gm16912	intron	ENSMUSG00000087551	NonProperStrand	29	chr17	29632004	29632035	protein_coding	Pim1	utr3	ENSMUSG00000024014	ProperStrand	12	1	-16.7450
chr9	56419439	56419548	LTR	MLT1H	MaLR	chr9MLT1H56419374	ProperStrand	1	chr9	123462134	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr12	3250249	3250354	protein_coding	Rab10	intron	ENSMUSG00000020671	ProperStrand	66	chr12	3246895	3246920	protein_coding	1700012B15Rik	intron	ENSMUSG00000079179	NonProperStrand	4	1	-17.5251
chr4	148591551	148591591	protein_coding	Kif1b	intron	ENSMUSG00000063077	NonProperStrand	70	chr1	152768867	152771418	protein_coding	Hmcn1	intron	ENSMUSG00000066842	NonProperStrand	30	2	-21.1336
chr16	36924678	36924768	protein_coding-noncoding	Golgb1	utr5	ENSMUSG00000034243	ProperStrand	2	chr16	36925796	36925896	protein_coding	Golgb1	intron	ENSMUSG00000034243	ProperStrand	83	2	-inf
chr9	63272577	63272635	protein_coding	Iqch	intron	ENSMUSG00000037801	ProperStrand	108	chr2	161382814	161382879	protein_coding	Ptprt	intron	ENSMUSG00000053141	NonProperStrand	55	1	-11.0167
chr11	25110009	25110099	LINE	L1_Mus1	L1	chr11L1_Mus125109807	ProperStrand	1	chr11	25109608	25109708	SINE	B3A	B2	chr11B3A25109571	NonProperStrand	1	1	-inf
chr19	32234282	32234350	protein_coding	Sgms1	exon	ENSMUSG00000040451	ProperStrand	159	chr16	94616899	94616957	protein_coding	Ttc3	utr3	ENSMUSG00000040785	ProperStrand	131	1	-8.5033
chr9	72470495	72470585	protein_coding	Rfx7	utr3	ENSMUSG00000037674	NonProperStrand	17	chr17	65871894	65871994	protein_coding	Tmem232	intron	ENSMUSG00000045036	ProperStrand	160	1	-12.6162
chr10	67033468	67033500	SINE	B4	B4	chr10B467033313	ProperStrand	1	chr2	102023827	102023924	protein_coding	Ldlrad3	intron	ENSMUSG00000048058	ProperStrand	117	1	-inf
chr15	62220185	62220269	SINE	MIR	MIR	chr15MIR62220206	NonProperStrand	1	chr15	62192852	62192913	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	1	-inf
chr4	138892350	138892401	SINE	B2_Mm1t	B2	chr4B2_Mm1t138892307	NonProperStrand	3	chr4	141037526	141037620	protein_coding	Spen	intron	ENSMUSG00000040761	ProperStrand	77	1	-17.9119
chr3	138786437	138786495	LTR	MLT1C	MaLR	chr3MLT1C138786189	ProperStrand	1	chr11	33462462	33462549	protein_coding	Gabrp	intron	ENSMUSG00000020159	NonProperStrand	3	1	-inf
chr18	33926609	33926687	LINE	Lx4A	L1	chr18Lx4A33926564	NonProperStrand	1	chr17	39847477	39847505	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr13	54561633	54561661	protein_coding	Thoc3	intron	ENSMUSG00000025872	ProperStrand	6	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-11.3093
chr6	88400478	88400578	LINE	L1ME2z	L1	chr6L1ME2z88400498	ProperStrand	1	chr6	88441377	88441467	protein_coding	Ruvbl1	intron	ENSMUSG00000030079	ProperStrand	1	1	-inf
chr1	92912994	92913094	protein_coding	Lrrfip1	intron	ENSMUSG00000026305	ProperStrand	39	chr6	29310447	29310537	protein_coding	Calu	intron	ENSMUSG00000029767	NonProperStrand	2	1	-19.6466
chr5	111075327	111075417	LTR	MTC-int	MaLR	chr5MTC-int111075299	ProperStrand	1	chr5	111075685	111075785	SINE	B1_Mur4	Alu	chr5B1_Mur4111075688	ProperStrand	1	1	-inf
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	124836631	124836760	protein_coding	Zfpm1	intron	ENSMUSG00000049577	NonProperStrand	51	2	-8.8262
chr14	100099594	100099663	DNA	RCHARR1	MER1_type	chr14RCHARR1100099070	ProperStrand	1	chr2	57308575	57308639	LINE	L1_Mus2	L1	chr2L1_Mus257307299	ProperStrand	4	1	-inf
chr17	39846070	39846102	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr5	102693763	102693832	SINE	B4	B4	chr5B4102693662	NonProperStrand	1	1	-inf
chr15	84195776	84197026	LTR	MLT1A1	MaLR	chr15MLT1A184195581	NonProperStrand	4	chr15	84192319	84195768	LTR	ORR1A2	MaLR	chr15ORR1A284192115	ProperStrand	1	1	-inf
chr5	115560915	115561111	protein_coding	Acads	exon	ENSMUSG00000029545	NonProperStrand	165	chr13	67810592	67810727	protein_coding	Zfp71-rs1	intron	ENSMUSG00000071281	NonProperStrand	3	2	-inf
chr11	87600311	87600411	LINE	L1M5	L1	chr11L1M587600296	ProperStrand	4	chr11	87600212	87600302	SINE	B1_Mur1	Alu	chr11B1_Mur187600146	ProperStrand	4	4	-inf
chr1	28503187	28503277	LINE	L1_Mus3	L1	chr1L1_Mus328503079	ProperStrand	1	chr1	28503375	28503475	SINE	B1_Mus1	Alu	chr1B1_Mus128503343	ProperStrand	1	1	-inf
chr3	59271377	59271467	LINE	Lx8	L1	chr3Lx859271336	NonProperStrand	1	chr3	59271555	59271655	LINE	Lx8	L1	chr3Lx859271476	NonProperStrand	1	1	-inf
chr17	70963742	70963826	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr10	61826853	61826893	protein_coding	Hk1	intron	ENSMUSG00000037012	NonProperStrand	16	1	-8.8669
chr19	9885739	9886685	LTR	RMER17B	ERVK	chr19RMER17B9884889	ProperStrand	8	chr6	66950958	66951025	protein_coding	Gng12	intron	ENSMUSG00000036402	ProperStrand	67	1	-15.9440
chr3	106613151	106613241	LINE	L1M3	L1	chr3L1M3106612885	NonProperStrand	1	chr3	106613395	106613495	LINE	L1VL4	L1	chr3L1VL4106613372	ProperStrand	1	1	-inf
chr13	21780435	21780494	LINE	L1_Mus1	L1	chr13L1_Mus121780210	NonProperStrand	43	chr6	7675183	7675271	LTR	MMERGLN-int	ERV1	chr6MMERGLN-int7669533	NonProperStrand	9	1	-16.6201
chr7	136984867	136984942	LINE	Lx7	L1	chr7Lx7136983669	ProperStrand	3	chr4	137652034	137652099	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	1	-14.2970
chr14	56861246	56861336	LINE	L1VL2	L1	chr14L1VL256861126	NonProperStrand	1	chr14	56861016	56861116	LTR	RMER12	ERVK	chr14RMER1256860929	ProperStrand	1	1	-inf
chr15	73977672	73977690	LTR	MTEa	MaLR	chr15MTEa73977580	NonProperStrand	2	chr8	3946289	3946369	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	1	-21.2279
chr15	100813862	100813917	protein_coding	Scn8a	intron	ENSMUSG00000023033	ProperStrand	29	chr8	119508721	119508760	protein_coding	Gcsh	intron	ENSMUSG00000034424	ProperStrand	57	1	-13.5974
chr17	39848700	39848783	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	13175206	13175272	protein_coding-noncoding	Ncoa2	utr3	ENSMUSG00000005886	ProperStrand	13	1	-4.4576
chr15	76904635	76904872	LTR	RLTR12B	ERVK	chr15RLTR12B76904629	ProperStrand	27	chr2	5498765	5498855	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.1101
chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr10	61353127	61353255	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	395	1	-8.5006
chr18	32849081	32850415	lincRNA	4930455D15Rik	intron	ENSMUSG00000085056	NonProperStrand	24	chr11	95961720	95961765	protein_coding	Calcoco2	intron	ENSMUSG00000006056	ProperStrand	64	1	-13.7505
chr4	41464696	41464744	antisense	1700066J24Rik	.	ENSMUSG00000036162	NonProperStrand	1	chr13	114002667	114002700	protein_coding	Esm1	intron	ENSMUSG00000042379	ProperStrand	92	1	-inf
chr9	109101164	109102100	LTR	MERVL-int	ERVL	chr9MERVL-int109101361	ProperStrand	1	chr9	109101102	109102028	LTR	MT2C_Mm	ERVL	chr9MT2C_Mm109100866	ProperStrand	1	1	-inf
chrX	37084031	37085140	LINE	Lx3C	L1	chrXLx3C37083989	ProperStrand	4	chr17	39846588	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr6	124716794	124716898	protein_coding-noncoding	Eno2	utr3	ENSMUSG00000004267	NonProperStrand	11	chr6	124714928	124716734	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	9	-inf
chr6	66998408	66998489	lincRNA	E230016M11Rik	intron	ENSMUSG00000087231	NonProperStrand	42	chr19	55877574	55877629	protein_coding	Tcf7l2	intron	ENSMUSG00000024985	ProperStrand	67	1	-12.5205
chr1	150394980	150395040	LINE	L1Md_T	L1	chr1L1Md_T150389241	NonProperStrand	23	chr19	11784367	11784428	protein_coding	Gm97	intron	ENSMUSG00000055933	NonProperStrand	8	1	-18.0543
chr17	39847440	39847460	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	46760980	46761097	protein_coding	Eif1a	intron	ENSMUSG00000057561	ProperStrand	4	1	-3.7035
chrX	56981425	56981442	LINE	L1Md_A	L1	chrXL1Md_A56975859	ProperStrand	1	chr17	39846426	39846462	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	99000517	99000580	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	155	chr4	155169964	155170007	protein_coding	E230028L10Rik	intron	ENSMUSG00000078487	NonProperStrand	75	1	-9.6697
chr6	105159821	105159911	LINE	Lx	L1	chr6Lx105159752	NonProperStrand	1	chr6	148594908	148595008	LINE	Lx6	L1	chr6Lx6148594704	ProperStrand	1	1	-inf
chr8	83680983	83681197	LINE	Lx3_Mus	L1	chr8Lx3_Mus83677403	NonProperStrand	6	chr9	110281303	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-12.3138
chr14	45378188	45378284	LTR	RMER21B	ERV1	chr14RMER21B45377487	ProperStrand	1	chr13	94837135	94837190	protein_coding	Lhfpl2	intron	ENSMUSG00000045312	ProperStrand	32	1	-inf
chr13	21716421	21716539	LINE	Lx7	L1	chr13Lx721715740	ProperStrand	9	chr13	21716822	21716858	SINE	B1_Mus1	Alu	chr13B1_Mus121716766	ProperStrand	5	2	-inf
chr9	14558602	14562084	SINE	B3	B2	chr9B314562013	NonProperStrand	1	chr4	98730753	98730821	protein_coding	Dock7	intron	ENSMUSG00000028556	NonProperStrand	109	1	-inf
chr5	146261112	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	86478549	86478618	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-5.9575
chr13	113593063	113593115	protein_coding	Ppap2a	intron	ENSMUSG00000021759	NonProperStrand	111	chr6	4948463	4948559	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	258	2	-12.5700
chr6	83311231	83311258	LINE	Lx7	L1	chr6Lx783311043	ProperStrand	4	chr11	60952312	60952390	protein_coding	Tnfrsf13b	intron	ENSMUSG00000010142	ProperStrand	35	2	-inf
chr17	25796284	25796333	protein_coding	Lmf1	intron	ENSMUSG00000002279	NonProperStrand	51	chr4	107270113	107270165	protein_coding	Glis1	intron	ENSMUSG00000034762	ProperStrand	30	1	-13.7541
chr15	84290814	84290872	LTR	RMER19B	ERVK	chr15RMER19B84290706	ProperStrand	1	chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-inf
chrX	91547317	91547407	Other	RMER1C	Other	chrXRMER1C91547203	NonProperStrand	1	chrX	91547055	91547155	SINE	B1_Mm	Alu	chrXB1_Mm91547056	ProperStrand	1	1	-inf
chr17	77705409	77705509	LINE	L1Md_T	L1	chr17L1Md_T77701238	NonProperStrand	1	chr17	77705685	77705775	LINE	L1Md_T	L1	chr17L1Md_T77705656	NonProperStrand	1	1	-inf
chr3	52291160	52291248	LTR	RMER17C	ERVK	chr3RMER17C52291042	ProperStrand	1	chr3	52291323	52291372	Simple_repeat	(TCTCCC)n	Simple_repeat	chr3(TCTCCC)n52291229	ProperStrand	1	1	-inf
chr17	39846580	39846701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	99370527	99370566	SINE	B1F	Alu	chr13B1F99370498	NonProperStrand	1	1	-inf
chr17	39846674	39846713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	92168625	92168655	SINE	ID_B1	B4	chr6ID_B192168524	ProperStrand	2	1	-5.3533
chr17	39847739	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	5867972	5868029	LTR	RLTR41	ERV1	chr2RLTR415867755	ProperStrand	1	1	-inf
chr10	40258533	40258655	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr1	143608555	143609383	LINE	Lx7	L1	chr1Lx7143608609	NonProperStrand	1	1	-inf
chr4	106440017	106440106	protein_coding	Acot11	intron	ENSMUSG00000034853	NonProperStrand	18	chr17	53673905	53673957	protein_coding	4921523A10Rik	intron	ENSMUSG00000044957	ProperStrand	12	1	-17.7491
chr4	138243267	138243304	LINE	L1MA6	L1	chr4L1MA6138243030	ProperStrand	1	chr18	67945998	67946040	protein_coding	Seh1l	intron	ENSMUSG00000079614	ProperStrand	14	1	-inf
chr17	39847690	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	121572165	121572748	Other	RMER1C	Other	chr5RMER1C121572305	NonProperStrand	8	3	-6.7794
chr6	141572876	141572976	LINE	Lx3C	L1	chr6Lx3C141572647	NonProperStrand	1	chr6	141543953	141544043	LTR	ORR1A0-int	MaLR	chr6ORR1A0-int141543006	NonProperStrand	1	1	-inf
chr11	102568026	102568084	LTR	ORR1A2	MaLR	chr11ORR1A2102567754	ProperStrand	37	chr3	98313244	98313330	protein_coding	Hsd3b4	intron	ENSMUSG00000056351	ProperStrand	8	1	-17.1774
chr17	39848098	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr11	61041731	61041785	protein_coding	Aldh3a2	intron	ENSMUSG00000010025	NonProperStrand	20	1	-3.3703
chr15	79707022	79707091	LTR	RLTR13D5	ERVK	chr15RLTR13D579706383	NonProperStrand	3	chr15	79707997	79712128	SINE	ID_B1	B4	chr15ID_B179707963	ProperStrand	1	1	-inf
chr9	61912323	61912360	protein_coding	Glce	intron	ENSMUSG00000032252	ProperStrand	176	chr6	84090526	84090580	protein_coding	Dysf	intron	ENSMUSG00000033788	NonProperStrand	14	1	-12.8261
chr6	29169047	29169147	LINE	L1Md_F2	L1	chr6L1Md_F229168695	NonProperStrand	1	chr6	29169472	29169562	LINE	L1Md_F2	L1	chr6L1Md_F229169131	NonProperStrand	1	1	-inf
chr5	146261174	146261229	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr14	20995935	21001176	protein_coding	Kcnk5	intron	ENSMUSG00000023243	NonProperStrand	15	1	-7.8289
chr4	132309464	132309546	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr7	133081279	133081351	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-3.0311
chr17	56427898	56427959	protein_coding	Plin3	intron	ENSMUSG00000024197	ProperStrand	33	chr13	12414765	12414837	protein_coding	Actn2	intron	ENSMUSG00000052374	NonProperStrand	37	1	-14.2112
chrX	87238359	87238416	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr2	167065884	167065951	protein_coding	Ptgis	utr5	ENSMUSG00000017969	NonProperStrand	81	1	-8.8808
chr17	39846453	39846504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	74028500	74028543	LTR	RMER17B	ERVK	chrXRMER17B74027970	NonProperStrand	1	1	-inf
chr17	35145690	35145732	protein_coding	Vars	intron	ENSMUSG00000007029	ProperStrand	65	chr9	21388619	21388710	protein_coding	Carm1	intron	ENSMUSG00000032185	ProperStrand	86	1	-11.1375
chr19	57166716	57166734	protein_coding	Ablim1	intron	ENSMUSG00000025085	ProperStrand	19	chr2	150481338	150481366	protein_coding	Acss1	intron	ENSMUSG00000027452	ProperStrand	16	1	-17.0303
chr10	44990916	44991006	LINE	L1_Mus3	L1	chr10L1_Mus344989934	ProperStrand	1	chr10	47587839	47587939	LINE	Lx3_Mus	L1	chr10Lx3_Mus47587627	NonProperStrand	1	1	-inf
chr15	53214313	53214420	LINE	L1_Mur3	L1	chr15L1_Mur353214323	ProperStrand	5	chr15	53214165	53214320	SINE	B3	B2	chr15B353214192	ProperStrand	5	5	-inf
chr17	39847272	39847315	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	16743345	16747270	protein_coding	Slc8a2	intron	ENSMUSG00000030376	ProperStrand	3	1	-5.4882
chr7	27533740	27533801	LINE	L1_Mus2	L1	chr7L1_Mus227531993	ProperStrand	8	chr19	5800065	5800135	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	2	-13.7056
chr5	146260994	146261023	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	124458000	124458019	protein_coding	C1rl	intron	ENSMUSG00000038527	NonProperStrand	9	1	-8.8915
chr4	44990500	44990586	antisense	Gm12679	.	ENSMUSG00000086205	NonProperStrand	20	chr9	123461989	123462047	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr2	31093799	31093909	SINE	B1_Mus2	Alu	chr2B1_Mus231093784	NonProperStrand	1	chr19	5797407	5797436	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr17	39847284	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	160195282	160196989	protein_coding	Fam5b	intron	ENSMUSG00000004031	NonProperStrand	9	1	-3.1539
chr7	101026535	101026611	LINE	L1VL4	L1	chr7L1VL4101023606	ProperStrand	1	chr17	39847440	39847488	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847636	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	92142801	92150142	protein_coding	Zfyve20	intron	ENSMUSG00000014550	NonProperStrand	16	3	-3.9541
chr5	68349778	68349868	LINE	L1MA9	L1	chr5L1MA968349114	ProperStrand	1	chr5	68349913	68350013	LINE	Lx5	L1	chr5Lx568349897	ProperStrand	1	1	-inf
chr5	52802208	52802281	SINE	B1_Mus2	Alu	chr5B1_Mus252802148	ProperStrand	1	chr13	97190561	97190582	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr9	61415578	61416638	LTR	LTR89	ERVL?	chr9LTR8961415509	ProperStrand	5	chr9	61416784	61416884	Simple_repeat	(GA)n	Simple_repeat	chr9(GA)n61416724	ProperStrand	10	5	-inf
chr4	82433693	82433782	LINE	L1Md_A	L1	chr4L1Md_A82432044	ProperStrand	4	chr9	123461882	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-10.7746
chr10	12518101	12518160	protein_coding	Utrn	intron	ENSMUSG00000019820	ProperStrand	150	chr5	138298379	138298562	protein_coding	Pilrb1	exon	ENSMUSG00000066684	NonProperStrand	29	1	-11.6528
chr2	32219691	32232155	protein_coding-noncoding	Ciz1	utr5	ENSMUSG00000039205	ProperStrand	39	chr2	32219614	32235569	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	193	15	-21.2532
chr5	24138144	24138234	SINE	B3A	B2	chr5B3A24138143	NonProperStrand	1	chr5	24138268	24138369	Simple_repeat	(TCTCC)n	Simple_repeat	chr5(TCTCC)n24138287	ProperStrand	1	1	-inf
chr12	109654311	109654351	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	chr11	58932342	58932392	protein_coding	Obscn	intron	ENSMUSG00000061462	ProperStrand	36	1	-8.8173
chr5	29431310	29431410	LINE	L1Md_A	L1	chr5L1Md_A29431327	ProperStrand	1	chr5	29431131	29431221	LTR	ORR1A1	MaLR	chr5ORR1A129430949	NonProperStrand	1	1	-inf
chr13	29967608	29967708	LINE	Lx7	L1	chr13Lx729967532	ProperStrand	7	chr13	29967806	29967896	LTR	ORR1A2	MaLR	chr13ORR1A229967831	ProperStrand	5	1	-22.8469
chr16	13370188	13370255	protein_coding	Mkl2	intron	ENSMUSG00000009569	ProperStrand	153	chrX	106196867	106196944	pseudogene	5730416F02Rik	.	ENSMUSG00000081793	ProperStrand	13	1	-13.2622
chr5	120901922	120902022	LTR	MTA_Mm	MaLR	chr5MTA_Mm120901631	NonProperStrand	1	chr5	120881849	120881938	protein_coding	Lhx5	utr5	ENSMUSG00000029595	ProperStrand	2	1	-inf
chr11	17236168	17236268	LTR	MYSERV16_I-int	ERVK	chr11MYSERV16_I-int17236189	ProperStrand	2	chr11	17236056	17236146	LTR	RLTR15	ERVK	chr11RLTR1517235887	ProperStrand	2	2	-inf
chr7	102184910	102185901	LINE	L1Md_T	L1	chr7L1Md_T102180883	ProperStrand	9	chr8	124409648	124409738	protein_coding	Slc7a5	intron	ENSMUSG00000040010	ProperStrand	56	1	-16.0331
chr2	49198730	49198792	LINE	L1MB8	L1	chr2L1MB849198723	ProperStrand	1	chrX	152308900	152308974	protein_coding	Gm15155	intron	ENSMUSG00000055109	NonProperStrand	93	1	-inf
chr8	31149862	31149951	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	77	chr9	123461931	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-3.0807
chr15	44673123	44673223	LINE	L1_Mur2	L1	chr15L1_Mur244672693	NonProperStrand	1	chr15	44721509	44721599	LTR	RMER16-int	ERVK	chr15RMER16-int44718622	ProperStrand	1	1	-inf
chr17	6770490	6770553	LTR	MTD	MaLR	chr17MTD6770289	ProperStrand	1	chr17	6770021	6770089	SINE	B3	B2	chr17B36769961	ProperStrand	3	1	-inf
chr11	55482775	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr16	18240782	18240826	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	38	1	-13.9258
chr17	39847890	39847921	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	53261666	53261746	SINE	B4A	B4	chr11B4A53261632	NonProperStrand	4	1	-3.7035
chr17	39843817	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	3069247	3069264	LTR	RLTR13A3	ERVK	chr17RLTR13A33069153	NonProperStrand	1	1	-inf
chr4	123583009	123583097	antisense	Gm12905	.	ENSMUSG00000085875	ProperStrand	22	chr4	148021441	148021494	protein_coding	Gm572	intron	ENSMUSG00000070577	NonProperStrand	43	1	-14.7343
chr8	127197957	127199273	protein_coding-noncoding	Ttc13	utr3	ENSMUSG00000037300	NonProperStrand	11	chr8	127199118	127205319	protein_coding	Ttc13	intron	ENSMUSG00000037300	NonProperStrand	38	2	-inf
chr9	40804775	40804839	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr3	122484616	122484708	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	220	1	-4.8902
chr2	26318159	26318249	protein_coding-noncoding	Notch1	utr3	ENSMUSG00000026923	NonProperStrand	3	chr2	26318253	26318353	protein_coding	Notch1	intron	ENSMUSG00000026923	NonProperStrand	33	3	-inf
chr1	100180182	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr3	146471446	146471533	protein_coding	Prkacb	intron	ENSMUSG00000005034	ProperStrand	2	1	-17.9868
chr11	75733083	75751910	protein_coding	Rph3al	utr5	ENSMUSG00000020847	NonProperStrand	157	chr13	114006937	114007049	protein_coding	Esm1	utr3	ENSMUSG00000042379	ProperStrand	92	1	-9.2347
chr13	9834318	9834428	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr9	64178513	64178530	protein_coding	Dis3l	intron	ENSMUSG00000032396	ProperStrand	29	1	-10.5750
chr14	54403715	54403798	LINE	L1_Mm	L1	chr14L1_Mm54403700	ProperStrand	1	chr7	28948670	28948715	protein_coding	9530053A07Rik	intron	ENSMUSG00000078776	NonProperStrand	96	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr17	63122964	63123070	protein_coding	Efna5	intron	ENSMUSG00000048915	ProperStrand	104	1	-5.4901
chr15	38919046	38919136	LINE	Lx	L1	chr15Lx38919018	NonProperStrand	1	chr15	38919248	38919348	LTR	ETnERV2-int	ERVK	chr15ETnERV2-int38919148	NonProperStrand	1	1	-inf
chr5	118687098	118687188	protein_coding-noncoding	Rnft2	utr3	ENSMUSG00000032850	NonProperStrand	2	chr5	118687234	118687334	protein_coding	Rnft2	exon	ENSMUSG00000032850	NonProperStrand	136	2	-inf
chr6	47477485	47477524	LTR	ORR1D2	MaLR	chr6ORR1D247477384	ProperStrand	1	chr12	67664224	67664250	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chrX	157510918	157510947	SINE	B1_Mus1	Alu	chrXB1_Mus1157510863	NonProperStrand	1	chr15	81704727	81704754	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	1	-inf
chr17	39846376	39846397	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	27024873	27024892	LTR	RMER6A	ERVK	chr9RMER6A27024410	ProperStrand	1	1	-inf
chr6	94264836	94264866	LTR	ORR1D1	MaLR	chr6ORR1D194264803	ProperStrand	4	chr6	94146061	94146180	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-11.9329
chr1	173346560	173367450	lincRNA	Gm17520	exon	ENSMUSG00000092117	NonProperStrand	7	chr1	173367922	173367972	protein_coding	F11r	intron	ENSMUSG00000038235	ProperStrand	4	1	-inf
chr17	39846955	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	84990967	84991013	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n84990967	ProperStrand	1	1	-inf
chr1	9322087	9322177	LINE	L1VL4	L1	chr1L1VL49318906	NonProperStrand	1	chr1	9322236	9322336	LINE	L1_Mus2	L1	chr1L1_Mus29322241	NonProperStrand	1	1	-inf
chrX	20703990	20704080	LINE	Lx5	L1	chrXLx520703102	ProperStrand	6	chr5	37326421	37326521	protein_coding	Ppp2r2c	intron	ENSMUSG00000029120	NonProperStrand	30	1	-18.2076
chr6	138691458	138691483	LINE	L1Md_T	L1	chr6L1Md_T138690001	ProperStrand	1	chr2	35728975	35729091	protein_coding	Ttll11	intron	ENSMUSG00000026885	NonProperStrand	528	1	-inf
chr6	113147724	113149614	LINE	L1Md_F2	L1	chr6L1Md_F2113149400	NonProperStrand	2	chr17	39847001	39847031	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr13	115089876	115089892	protein_coding	Ndufs4	intron	ENSMUSG00000021764	ProperStrand	22	chr11	120701531	120703613	protein_coding	Ccdc57	intron	ENSMUSG00000048445	NonProperStrand	71	1	-13.7207
chr5	146261165	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	30124376	30124437	protein_coding	Uhrf2	intron	ENSMUSG00000024817	NonProperStrand	92	1	-4.2433
chr18	60679317	60679338	LTR	RLTR28	ERVL	chr18RLTR2860679213	NonProperStrand	1	chr2	29627966	29628075	protein_coding	Trub2	intron	ENSMUSG00000039826	NonProperStrand	115	1	-inf
chr17	39847690	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	45827397	45827416	protein_coding	Igfbpl1	intron	ENSMUSG00000035551	ProperStrand	4	1	-3.7035
chr10	71348057	71348073	LTR	RMER20B	ERVK	chr10RMER20B71347945	ProperStrand	1	chr3	116014492	116014518	protein_coding	Cdc14a	intron	ENSMUSG00000033502	NonProperStrand	5	1	-inf
chr17	87256073	87256106	LTR	MYSERV-int	ERVK	chr17MYSERV-int87255334	ProperStrand	1	chr17	87255259	87255326	LTR	RMER4B	ERVK	chr17RMER4B87254873	ProperStrand	1	1	-inf
chr17	24721229	24721639	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr5	129622896	129622996	protein_coding	Gpr133	intron	ENSMUSG00000044017	NonProperStrand	6	1	-13.7640
chr17	39843765	39843827	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr6	72767719	72767782	LTR	MTC	MaLR	chr6MTC72767678	NonProperStrand	3	1	-9.1352
chr16	97837667	97839271	LTR	ERVL-B4-int	ERVL	chr16ERVL-B4-int97836766	ProperStrand	2	chr16	97835796	97835825	LTR	MLT2B1	ERVL	chr16MLT2B197835715	ProperStrand	1	1	-inf
chr17	39844643	39844732	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr11	77504413	77504430	protein_coding	Nufip2	intron	ENSMUSG00000037857	ProperStrand	47	1	-3.0073
chr19	46815706	46815756	SINE	B1_Mus2	Alu	chr19B1_Mus246815626	ProperStrand	1	chr19	46814520	46814601	protein_coding	As3mt	intron	ENSMUSG00000003559	ProperStrand	85	1	-inf
chr8	114799410	114799491	LTR	RMER15	ERVL	chr8RMER15114799231	NonProperStrand	3	chr13	112578226	112578297	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-10.4703
chr17	39847657	39847693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	72875956	72876001	protein_coding	Upf1	intron	ENSMUSG00000058301	ProperStrand	2	1	-5.4040
chr17	39847194	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	27217323	27217354	protein_coding	Itpr3	intron	ENSMUSG00000042644	ProperStrand	2	1	-6.5615
chr11	85914323	85914339	protein_coding	Brip1	intron	ENSMUSG00000034329	NonProperStrand	5	chr13	44869595	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr15	29214055	29214155	LINE	L1VL2	L1	chr15L1VL229213360	ProperStrand	1	chr15	29214203	29214293	LTR	RLTR10C	ERVK	chr15RLTR10C29214162	ProperStrand	1	1	-inf
chr17	39848598	39848684	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr13	21200198	21200274	LTR	RMER13A	ERVK	chr13RMER13A21199786	ProperStrand	5	1	-6.4438
chr10	79852805	79852827	SINE	B1_Mur4	Alu	chr10B1_Mur479852792	NonProperStrand	1	chr13	97190591	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr14	115109524	115109546	LINE	L1Md_A	L1	chr14L1Md_A115109405	NonProperStrand	2	chr4	116593235	116593328	protein_coding	Zswim5	intron	ENSMUSG00000033948	ProperStrand	54	1	-19.4448
chr17	39847011	39847029	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	21675098	21675192	SINE	B1_Mus2	Alu	chr9B1_Mus221675088	NonProperStrand	1	1	-inf
chr13	114104133	114104156	LINE	L1MA5A	L1	chr13L1MA5A114104050	NonProperStrand	1	chr7	16349021	16349357	LINE	L1Md_F	L1	chr7L1Md_F16348946	ProperStrand	1	1	-inf
chr1	63219991	63220035	protein_coding	Ndufs1	intron	ENSMUSG00000025968	NonProperStrand	47	chr3	116646663	116646732	protein_coding	Palmd	intron	ENSMUSG00000033377	ProperStrand	33	1	-13.7248
chr3	5399052	5399070	protein_coding	Zfhx4	exon	ENSMUSG00000025255	NonProperStrand	7	chr5	36552594	36552670	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-14.0941
chr17	39847127	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	74446210	74446322	protein_coding	E130309D14Rik	intron	ENSMUSG00000069814	NonProperStrand	8	1	-3.3803
chr9	43779687	43779784	LINE	L2b	L2	chr9L2b43779684	ProperStrand	3	chr17	39846932	39846969	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-8.0300
chr10	42252727	42252795	protein_coding	Snx3	intron	ENSMUSG00000019804	NonProperStrand	176	chr9	111229142	111229200	protein_coding	Trank1	intron	ENSMUSG00000062296	NonProperStrand	18	1	-12.3077
chr12	51660219	51660301	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	chr17	27923666	27923726	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	NonProperStrand	106	1	-10.1324
chr9	32365481	32365571	LINE	L1MC4a	L1	chr9L1MC4a32365435	NonProperStrand	1	chr9	32365811	32365911	LTR	ORR1E	MaLR	chr9ORR1E32365789	NonProperStrand	1	1	-inf
chr2	47294334	47294434	LINE	Lx3A	L1	chr2Lx3A47294068	ProperStrand	1	chr2	47294543	47294633	LINE	Lx3A	L1	chr2Lx3A47294567	NonProperStrand	1	1	-inf
chr2	22744847	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr1	179042021	179042093	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	1	-3.7151
chr9	61925046	61925534	LINE	Lx2	L1	chr9Lx261924872	ProperStrand	2	chr2	167065042	167065079	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	2	-inf
chr17	39847636	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	111206143	111206177	SINE	B4A	B4	chr9B4A111206066	NonProperStrand	1	1	-inf
chr3	9591855	9591917	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	chr7	25019741	25019792	protein_coding	Zfp109	intron	ENSMUSG00000074283	ProperStrand	14	1	-9.4329
chr10	79883483	79883514	protein_coding	Tcf3	intron	ENSMUSG00000020167	ProperStrand	6	chr2	5818283	5818360	protein_coding	Dhtkd1	utr3	ENSMUSG00000025815	ProperStrand	28	1	-18.5473
chr17	52651795	52651885	LINE	L1_Mus1	L1	chr17L1_Mus152651761	ProperStrand	1	chr17	52651548	52651648	Low_complexity	CT-rich	Low_complexity	chr17CT-rich52651575	NonProperStrand	1	1	-inf
chr8	61668293	61668393	LINE	Lx	L1	chr8Lx61668078	ProperStrand	1	chr8	61667899	61667989	LTR	RMER19C	ERVK	chr8RMER19C61667893	ProperStrand	1	1	-inf
chrX	100726779	100726879	LTR	RMER19B	ERVK	chrXRMER19B100726763	ProperStrand	1	chrX	100726694	100726784	SINE	B1_Mus2	Alu	chrXB1_Mus2100726616	ProperStrand	1	1	-inf
chr13	113896509	113896641	DNA	Charlie1a	MER1_type	chr13Charlie1a113896434	ProperStrand	1	chr13	113894537	113894558	LINE	L1MB7	L1	chr13L1MB7113894491	NonProperStrand	5	1	-inf
chr16	13416244	13416335	protein_coding	Mkl2	utr3	ENSMUSG00000009569	ProperStrand	153	chr2	166846931	166847031	protein_coding	Ddx27	intron	ENSMUSG00000017999	ProperStrand	17	1	-12.7050
chr13	36024108	36024185	LTR	MTA_Mm	MaLR	chr13MTA_Mm36023809	ProperStrand	2	chr17	39848070	39848101	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr10	106836180	106837293	protein_coding	Lin7a	intron	ENSMUSG00000019906	ProperStrand	5	chr4	148619219	148619305	protein_coding	Kif1b	intron	ENSMUSG00000063077	ProperStrand	77	1	-16.7238
chr5	109682915	109683015	LINE	Lx	L1	chr5Lx109682705	NonProperStrand	1	chr5	109683188	109683278	LTR	RLTR13A3	ERVK	chr5RLTR13A3109683089	NonProperStrand	4	1	-inf
chr7	78760383	78760473	LINE	L1MD1	L1	chr7L1MD178760106	NonProperStrand	1	chr7	78760560	78760661	LINE	L1MD1	L1	chr7L1MD178760542	NonProperStrand	1	1	-inf
chr3	58585970	58586046	lincRNA	4930593A02Rik	intron	ENSMUSG00000087019	ProperStrand	27	chr3	132983796	132983863	protein_coding	Ppa2	intron	ENSMUSG00000028013	NonProperStrand	29	1	-15.1079
chr14	19278161	19278191	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	chr16	84802670	84802774	protein_coding	Jam2	intron	ENSMUSG00000053062	ProperStrand	120	1	-10.1553
chr5	45701039	45701094	LTR	MTD	MaLR	chr5MTD45701021	NonProperStrand	1	chr2	5379291	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr5	146824505	146824597	LINE	Lx8	L1	chr5Lx8146824488	ProperStrand	1	chr6	39408971	39409002	LTR	RLTR10-int	ERVK	chr6RLTR10-int39407700	ProperStrand	5	1	-inf
chr11	87860138	87860764	lincRNA	2010015M23Rik	exon	ENSMUSG00000091914	NonProperStrand	3	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	1	-18.0574
chr17	39848150	39848320	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr16	18533187	18533277	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	2	-4.4718
chr16	3569797	3569910	LINE	L1_Mm	L1	chr16L1_Mm3568099	NonProperStrand	1	chr1	161105552	161105577	LINE	L1Md_F	L1	chr1L1Md_F161102139	NonProperStrand	1	1	-inf
chr5	146261142	146261230	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chrX	103113022	103113794	protein_coding	Atrx	intron	ENSMUSG00000031229	ProperStrand	8	3	-19.7566
chr17	39843003	39843066	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr6	124830270	124830515	protein_coding	Cd4	intron	ENSMUSG00000023274	NonProperStrand	29	1	-6.8244
chr5	31071890	31071950	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	chr5	73189021	73189071	protein_coding	Tec	intron	ENSMUSG00000029217	ProperStrand	63	1	-9.6446
chr11	106669437	106669509	protein_coding	Ccdc45	intron	ENSMUSG00000018372	NonProperStrand	26	chr11	33398840	33398887	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-9.1246
chr1	168394012	168394112	Other	RMER1B	Other	chr1RMER1B168393992	ProperStrand	2	chr1	168394181	168394271	Other	RMER1B	Other	chr1RMER1B168394164	ProperStrand	2	2	-inf
chr2	12763680	12763770	DNA	MER82	MER2_type	chr2MER8212763629	ProperStrand	1	chr2	12763936	12764036	Simple_repeat	(GGGAGA)n	Simple_repeat	chr2(GGGAGA)n12763909	ProperStrand	1	1	-inf
chr16	20520466	20520516	protein_coding	Dvl3	intron	ENSMUSG00000003233	ProperStrand	12	chr16	33110140	33110206	protein_coding	Lmln	intron	ENSMUSG00000022802	ProperStrand	22	1	-17.4442
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	20936569	20936585	SINE	B1_Mus1	Alu	chr9B1_Mus120936504	NonProperStrand	5	1	-11.9551
chr2	43406758	43406858	LTR	RMER15-int	ERVL	chr2RMER15-int43406652	NonProperStrand	1	chr2	43406449	43406539	Simple_repeat	(TA)n	Simple_repeat	chr2(TA)n43406449	ProperStrand	1	1	-inf
chr7	110286279	110286379	LINE	L1_Mus3	L1	chr7L1_Mus3110286179	ProperStrand	1	chr7	110286085	110286175	SINE	B1_Mus2	Alu	chr7B1_Mus2110286056	ProperStrand	1	1	-inf
chr9	19910740	19910840	LINE	L1Md_F	L1	chr9L1Md_F19910292	NonProperStrand	1	chr9	19910995	19911085	LINE	L1_Mus1	L1	chr9L1_Mus119910935	NonProperStrand	1	1	-inf
chr15	59532913	59532978	LINE	Lx8	L1	chr15Lx859532745	NonProperStrand	2	chr4	117608264	117608289	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	89	2	-inf
chr8	43136358	43138628	LINE	L1_Mus3	L1	chr8L1_Mus343136987	NonProperStrand	4	chr8	43138646	43138736	LINE	L1_Mus3	L1	chr8L1_Mus343137809	NonProperStrand	5	4	-inf
chr17	39845878	39845955	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr12	70969129	70969196	protein_coding	Map4k5	intron	ENSMUSG00000034761	ProperStrand	7	1	-6.0522
chr9	123462020	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr17	46446579	46446595	protein_coding	Abcc10	intron	ENSMUSG00000032842	ProperStrand	4	1	-6.3300
chr16	52051105	52051184	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	chr1	193555959	193555978	protein_coding	Lpgat1	intron	ENSMUSG00000026623	ProperStrand	6	1	-15.9064
chr6	3201508	3201535	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	47788040	47788057	protein_coding-noncoding	Gm20517	utr5	ENSMUSG00000023984	NonProperStrand	1	1	-inf
chr7	117521424	117521515	protein_coding-noncoding	Sbf2	utr3	ENSMUSG00000038371	NonProperStrand	2	chr7	117521464	117521564	protein_coding	Sbf2	exon	ENSMUSG00000038371	NonProperStrand	46	2	-inf
chr17	39846652	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	158061106	158061188	LTR	MLT1F1	MaLR	chr2MLT1F1158061058	ProperStrand	1	1	-inf
chr13	63278164	63278233	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	296	chr11	32405893	32405972	protein_coding	Ubtd2	intron	ENSMUSG00000044949	ProperStrand	41	1	-9.5921
chr13	109362919	109362952	protein_coding	Pde4d	intron	ENSMUSG00000021699	ProperStrand	453	chr18	68005805	68005894	protein_coding	Cep192	intron	ENSMUSG00000024542	ProperStrand	23	1	-9.9144
chr9	100947449	100947549	SINE	ID_B1	B4	chr9ID_B1100947406	ProperStrand	3	chr19	37223012	37223102	protein_coding	Cpeb3	intron	ENSMUSG00000039652	NonProperStrand	28	1	-19.7481
chr11	19950360	19950475	LTR	MTB-int	MaLR	chr11MTB-int19949712	ProperStrand	15	chr11	19950457	19950610	SINE	B1_Mus2	Alu	chr11B1_Mus219950486	ProperStrand	8	4	-inf
chr17	39848598	39848705	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr3	107553836	107553854	protein_coding	Csf1	utr5	ENSMUSG00000014599	NonProperStrand	3	1	-7.6307
chr11	60159693	60159785	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	chr16	16312907	16312939	protein_coding	Dnm1l	utr3	ENSMUSG00000022789	ProperStrand	30	1	-11.0897
chr5	146261280	146261338	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr6	128434393	128434443	protein_coding	Pzp	intron	ENSMUSG00000030359	ProperStrand	55	1	-8.0515
chr3	95632561	95632661	SINE	B2_Mm1a	B2	chr3B2_Mm1a95632519	ProperStrand	2	chr3	95632391	95632481	SINE	B2_Mm2	B2	chr3B2_Mm295632320	ProperStrand	2	2	-inf
chr15	73181588	73181694	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr3	138510568	138510586	protein_coding	Tspan5	intron	ENSMUSG00000028152	ProperStrand	84	2	-10.9018
chr17	39847246	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	48519530	48519576	protein_coding	Mbnl3	intron	ENSMUSG00000036109	NonProperStrand	5	1	-4.3348
chr17	4082296	4082386	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr4	26568387	26568487	lincRNA	4930548K13Rik	intron	ENSMUSG00000086257	NonProperStrand	4	1	-16.5712
chr2	120532181	120545891	protein_coding	Cdan1	intron	ENSMUSG00000027284	ProperStrand	17	chr2	120532039	120532139	protein_coding	Stard9	exon	ENSMUSG00000033705	NonProperStrand	75	3	-inf
chr4	133065486	133065564	SINE	B1_Mur2	Alu	chr4B1_Mur2133065504	NonProperStrand	1	chr9	40799042	40799121	protein_coding	Crtam	intron	ENSMUSG00000032021	ProperStrand	3	1	-inf
chr9	109978929	109979007	protein_coding	Mtap4	intron	ENSMUSG00000032479	ProperStrand	91	chr9	56122679	56122747	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-7.6665
chr8	70535152	70535201	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	chr11	101604976	101605038	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-8.6302
chr19	46181384	46181477	SINE	RSINE1	B4	chr19RSINE146181330	ProperStrand	3	chr13	32811142	32811182	protein_coding	Mylk4	intron	ENSMUSG00000044951	NonProperStrand	20	1	-23.6265
chr14	19956987	19957116	LINE	L1Md_F	L1	chr14L1Md_F19956428	ProperStrand	8	chr9	86699125	86699739	protein_coding	Snap91	intron	ENSMUSG00000033419	ProperStrand	34	1	-17.3098
chr9	57256679	57256703	LINE	L1Md_Gf	L1	chr9L1Md_Gf57255803	ProperStrand	2	chr9	57256951	57257049	LINE	L1Md_T	L1	chr9L1Md_T57256714	NonProperStrand	1	1	-inf
chr12	64709179	64709279	LTR	MTEb	MaLR	chr12MTEb64709138	NonProperStrand	1	chr2	97024792	97024882	protein_coding	Lrrc4c	intron	ENSMUSG00000050587	ProperStrand	26	1	-inf
chr13	62180966	62181066	LINE	L1_Mur2	L1	chr13L1_Mur262180935	ProperStrand	1	chr13	62180872	62180962	LINE	MusHAL1	L1	chr13MusHAL162180835	ProperStrand	1	1	-inf
chr17	39846899	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	83944788	83944878	LTR	MTE-int	MaLR	chr6MTE-int83944726	NonProperStrand	1	1	-inf
chr17	39847457	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	70893749	70896241	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	124	15	-4.7147
chr12	99290922	99290996	LTR	LTR41B	ERVL	chr12LTR41B99290821	ProperStrand	3	chr9	123462075	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr7	28582406	28582496	LTR	RMER19B	ERVK	chr7RMER19B28582432	NonProperStrand	4	chr7	28582303	28582403	LTR	RMER19C	ERVK	chr7RMER19C28582267	NonProperStrand	4	4	-inf
chr7	12849950	12850053	LINE	Lx9	L1	chr7Lx912849500	ProperStrand	1	chr1	122357176	122357225	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	1	-inf
chr2	49256321	49256369	SINE	B4A	B4	chr2B4A49256225	ProperStrand	2	chr2	166937436	166939710	protein_coding	Kcnb1	intron	ENSMUSG00000050556	NonProperStrand	23	2	-inf
chr7	55859928	55860028	LINE	L1_Mur2	L1	chr7L1_Mur255859901	NonProperStrand	3	chr7	55859770	55859860	SINE	B2_Mm1t	B2	chr7B2_Mm1t55859744	ProperStrand	3	3	-inf
chr10	25253226	25253328	DNA	URR1A	MER1_type	chr10URR1A25253232	NonProperStrand	1	chr9	123461802	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	101755616	101755638	protein_coding	Mgat4c	intron	ENSMUSG00000019888	NonProperStrand	12	chr11	35341120	35341242	protein_coding	Slit3	intron	ENSMUSG00000056427	ProperStrand	292	1	-12.1334
chr15	59030132	59030222	SINE	B3A	B2	chr15B3A59030091	ProperStrand	1	chr15	59029965	59030065	SINE	MIR3	MIR	chr15MIR359029981	NonProperStrand	5	1	-inf
chr17	39846452	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	8723622	8723656	LTR	MTC	MaLR	chr8MTC8723464	NonProperStrand	1	1	-inf
chr2	22744885	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chrX	87238364	87238386	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	1	-4.3434
chr14	72579035	72579083	LTR	MTE-int	MaLR	chr14MTE-int72579043	NonProperStrand	1	chr16	84976394	84976439	protein_coding	App	intron	ENSMUSG00000022892	ProperStrand	60	1	-inf
chr3	65956234	65956294	protein_coding	Veph1	intron	ENSMUSG00000027831	ProperStrand	30	chr10	82654932	82654961	protein_coding	Chst11	utr3	ENSMUSG00000034612	ProperStrand	39	1	-14.2981
chr9	44779430	44779520	protein_coding	Cd3g	intron	ENSMUSG00000002033	NonProperStrand	4	chr13	95960732	95960831	protein_coding	Pde8b	intron	ENSMUSG00000021684	ProperStrand	31	1	-19.3491
chr17	39848165	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr7	30647619	30649593	protein_coding	Zfp420	intron	ENSMUSG00000058402	NonProperStrand	19	2	-5.9632
chr17	39847440	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	146261240	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	83	12	-5.6601
chr15	25804706	25804773	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	163	chr11	120810942	120811015	protein_coding	Slc16a3	intron	ENSMUSG00000025161	NonProperStrand	149	1	-8.1973
chr17	39847177	39847338	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	189126290	189126310	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	3	-3.0101
chr15	37970526	37970629	protein_coding	Ubr5	exon	ENSMUSG00000037487	ProperStrand	87	chr16	11370239	11370257	protein_coding	Snx29	intron	ENSMUSG00000079738	ProperStrand	70	1	-10.9652
chr4	135431122	135431222	SINE	B3	B2	chr4B3135431148	ProperStrand	2	chr10	77054230	77054833	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	NonProperStrand	42	2	-inf
chr7	68109113	68109160	LINE	L1_Mus2	L1	chr7L1_Mus268109117	NonProperStrand	6	chr8	90325942	90326007	protein_coding	Zfp423	intron	ENSMUSG00000045333	ProperStrand	10	1	-21.3688
chr17	39847010	39847038	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	17294191	17294209	protein_coding	Atp6v1c2	intron	ENSMUSG00000020566	ProperStrand	3	1	-4.3017
chr5	146261282	146261336	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr18	65625489	65625516	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	1	-5.1803
chr9	21739752	21739842	protein_coding	Ccdc159	intron	ENSMUSG00000006241	ProperStrand	32	chr9	21739840	21742253	protein_coding	BC018242	intron	ENSMUSG00000040563	ProperStrand	41	5	-21.8383
chr8	53994250	53994350	LINE	L1Md_T	L1	chr8L1Md_T53989144	NonProperStrand	1	chr8	53962413	53962503	LINE	L1_Mm	L1	chr8L1_Mm53962172	ProperStrand	1	1	-inf
chr1	87680406	87680520	LTR	MT2A	ERVL	chr1MT2A87680424	ProperStrand	1	chr1	87680322	87680359	LTR	MTD	MaLR	chr1MTD87680284	NonProperStrand	1	1	-inf
chr11	109011789	109011832	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr4	116089377	116089430	protein_coding	Mast2	intron	ENSMUSG00000003810	NonProperStrand	30	1	-7.4801
chr4	149909707	149909763	protein_coding	Rere	intron	ENSMUSG00000039852	NonProperStrand	269	chr2	31502217	31502262	protein_coding	Prdm12	intron	ENSMUSG00000079466	ProperStrand	45	1	-9.5953
chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	104503837	104503903	protein_coding	Gm17660	intron	ENSMUSG00000091034	NonProperStrand	4	1	-3.6552
chr17	47619287	47619355	SINE	B3	B2	chr17B347619219	ProperStrand	1	chr17	47664950	47665008	protein_coding	Ccnd3	intron	ENSMUSG00000034165	ProperStrand	70	1	-inf
chr6	52631117	52631164	LTR	RLTR25A	ERVK	chr6RLTR25A52630750	NonProperStrand	1	chr19	56657025	56657111	protein_coding	Nhlrc2	intron	ENSMUSG00000025078	NonProperStrand	2	1	-inf
chr10	47360816	47360906	LTR	RLTR23	ERV1	chr10RLTR2347360793	NonProperStrand	1	chr10	47360335	47360435	LTR	RLTR6_Mm	ERV1	chr10RLTR6_Mm47359973	NonProperStrand	1	1	-inf
chr19	8803781	8803881	SINE	B2_Mm2	B2	chr19B2_Mm28803689	ProperStrand	6	chr19	8803611	8803701	SINE	PB1D10	Alu	chr19PB1D108803579	ProperStrand	6	6	-inf
chr8	114902345	114902428	LINE	L1_Mus1	L1	chr8L1_Mus1114901998	ProperStrand	1	chr8	114902428	114902501	LINE	Lx8	L1	chr8Lx8114902418	NonProperStrand	1	1	-inf
chr1	171102749	171102837	SINE	B3	B2	chr1B3171102605	ProperStrand	2	chr7	134813093	134813132	protein_coding	Bcl7c	intron	ENSMUSG00000030814	NonProperStrand	23	1	-20.7239
chr10	23785753	23785821	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr16	36079964	36080022	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	1	-9.1753
chr1	12855594	12855647	LINE	L1MA5	L1	chr1L1MA512855512	ProperStrand	1	chr17	39847519	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr18	34804415	34804515	protein_coding	Cdc23	intron	ENSMUSG00000024370	NonProperStrand	28	chr7	133078140	133078230	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-6.6864
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr5	111346034	111346112	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	1	-10.6314
chr9	100949022	100949122	LTR	MTD	MaLR	chr9MTD100948933	NonProperStrand	4	chr9	100949132	100949222	SINE	B2_Mm1a	B2	chr9B2_Mm1a100949134	NonProperStrand	3	3	-inf
chr7	30641500	30644560	LTR	ORR1D1	MaLR	chr7ORR1D130643312	ProperStrand	9	chr7	30641056	30641125	lincRNA	Gm17551	intron	ENSMUSG00000092015	NonProperStrand	2	1	-20.8824
chr16	35373424	35373524	LTR	RMER19B	ERVK	chr16RMER19B35373406	NonProperStrand	1	chr16	35373301	35373391	SINE	B2_Mm2	B2	chr16B2_Mm235373222	NonProperStrand	1	1	-inf
chr1	33447188	33447316	LINE	L1VL4	L1	chr1L1VL433446214	ProperStrand	1	chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	109682413	109682489	LINE	L1M3	L1	chr4L1M3109682026	ProperStrand	1	chr5	33503794	33503860	protein_coding	Slc5a1	utr3	ENSMUSG00000011034	NonProperStrand	541	1	-inf
chr4	109869229	109869257	LTR	MLT2B3	ERVL	chr4MLT2B3109869112	NonProperStrand	1	chr4	109881234	109881272	protein_coding	Elavl4	intron	ENSMUSG00000028546	NonProperStrand	51	1	-inf
chr5	108106890	108106990	lincRNA	Gm17717	intron	ENSMUSG00000091666	NonProperStrand	47	chr13	64179207	64179253	protein_coding	Hsd17b3	intron	ENSMUSG00000033122	NonProperStrand	14	1	-15.4811
chr7	143580201	143580321	LINE	Lx5	L1	chr7Lx5143579598	NonProperStrand	1	chr4	126272761	126272985	SINE	B1_Mur3	Alu	chr4B1_Mur3126272744	NonProperStrand	1	1	-inf
chr17	39847791	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	34316317	34316363	LTR	ORR1D1	MaLR	chr18ORR1D134316185	ProperStrand	1	1	-inf
chr13	37832505	37832595	LINE	L1M3	L1	chr13L1M337832459	ProperStrand	1	chr13	37832278	37832378	LTR	MTD	MaLR	chr13MTD37831940	ProperStrand	1	1	-inf
chr6	128325585	128325623	protein_coding	Foxm1	utr3	ENSMUSG00000001517	NonProperStrand	9	chr11	20137943	20138011	protein_coding	Cep68	intron	ENSMUSG00000044066	ProperStrand	1	1	-inf
chr17	39846478	39846805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	114901736	114902675	protein_coding	Mvk	intron	ENSMUSG00000041939	NonProperStrand	3	2	-8.0300
chr6	51464514	51465235	SINE	B1_Mur4	Alu	chr6B1_Mur451465128	NonProperStrand	6	chr6	51464436	51464536	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n51464369	NonProperStrand	5	1	-inf
chr16	18786945	18787016	protein_coding	Cdc45	intron	ENSMUSG00000000028	ProperStrand	28	chr13	97190563	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.6258
chr7	129408969	129409078	LINE	L1_Mm	L1	chr7L1_Mm129408714	NonProperStrand	2	chr17	39847207	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39847495	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	92129860	92129886	protein_coding	Mrps25	intron	ENSMUSG00000014551	NonProperStrand	2	1	-5.4040
chr10	3986532	3986632	LINE	L1M1	L1	chr10L1M13986462	NonProperStrand	1	chr10	122565824	122565914	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-inf
chr4	23623286	23623376	LINE	L1_Mus1	L1	chr4L1_Mus123622661	NonProperStrand	1	chr4	23623722	23623822	LINE	L1_Mus1	L1	chr4L1_Mus123623312	NonProperStrand	1	1	-inf
chr18	34261813	34261886	LTR	RMER17C	ERVK	chr18RMER17C34261714	NonProperStrand	2	chr6	3201474	3201518	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-10.1342
chrX	71560325	71560415	protein_coding-noncoding	Fam50a	utr5	ENSMUSG00000001962	ProperStrand	1	chr1	4879128	4879228	protein_coding	Tcea1	intron	ENSMUSG00000033813	NonProperStrand	2	1	-inf
chr5	32775426	32775526	protein_coding	Ppp1cb	intron	ENSMUSG00000014956	NonProperStrand	37	chr3	84941006	84941096	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	3	-inf
chr4	109138005	109138095	protein_coding	Rnf11	intron	ENSMUSG00000028557	ProperStrand	20	chr8	114347647	114347747	protein_coding	Cfdp1	intron	ENSMUSG00000031954	ProperStrand	1	1	-inf
chr6	3201467	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	80047427	80047487	protein_coding	Rhot1	exon	ENSMUSG00000017686	NonProperStrand	25	1	-4.5266
chrX	23220654	23220715	LINE	L1_Mm	L1	chrXL1_Mm23219722	NonProperStrand	5	chr1	167340268	167340302	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	1	-13.7378
chr8	84845008	84845109	LINE	L1Md_F2	L1	chr8L1Md_F284844462	NonProperStrand	9	chr8	84845478	84846095	LINE	L1Md_F2	L1	chr8L1Md_F284845460	NonProperStrand	20	2	-inf
chr17	39843335	39843447	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	138158419	138158436	protein_coding	Vwa5b1	intron	ENSMUSG00000028753	ProperStrand	7	1	-6.7356
chr12	118603322	118603412	DNA	Zaphod2	Tip100	chr12Zaphod2118603079	NonProperStrand	1	chr12	118603460	118603560	SINE	B4A	B4	chr12B4A118603485	ProperStrand	1	1	-inf
chr19	37384369	37384621	protein_coding	Ide	intron	ENSMUSG00000056999	NonProperStrand	32	chr1	89462525	89462578	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	366	1	-9.6692
chr3	103178974	103179006	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n103178906	ProperStrand	1	chr17	42816519	42816561	protein_coding	Gpr115	intron	ENSMUSG00000023918	ProperStrand	25	1	-inf
chr17	39846664	39846725	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	37534351	37534550	protein_coding	Olfr151	intron	ENSMUSG00000061165	ProperStrand	5	1	-3.1907
chr4	63178357	63178447	LINE	Lx8	L1	chr4Lx863178219	ProperStrand	1	chr4	63178583	63178683	LTR	MTE2b	MaLR	chr4MTE2b63178588	ProperStrand	1	1	-inf
chr12	79282178	79282218	SINE	B3A	B2	chr12B3A79282074	ProperStrand	1	chr2	144474689	144474722	protein_coding	Dtd1	intron	ENSMUSG00000027430	ProperStrand	26	1	-inf
chr14	99313945	99313982	SINE	MIRb	MIR	chr14MIRb99313836	NonProperStrand	2	chr15	99791398	99791457	protein_coding	1700030F18Rik	intron	ENSMUSG00000045350	ProperStrand	53	2	-inf
chr13	41640601	41640664	LINE	Lx	L1	chr13Lx41639992	ProperStrand	1	chr17	39847603	39847652	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chrX	160132139	160132231	LINE	L1MB2	L1	chrXL1MB2160132137	NonProperStrand	11	chrX	160130203	160132136	Simple_repeat	(TA)n	Simple_repeat	chrX(TA)n160132065	NonProperStrand	10	10	-inf
chr12	111236168	111236265	LINE	L1M2	L1	chr12L1M2111236045	NonProperStrand	1	chr13	97190561	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr8	23208517	23208535	protein_coding	Nek5	intron	ENSMUSG00000037738	ProperStrand	19	chr7	99480035	99482275	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	599	1	-9.7473
chr17	39846294	39846352	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	33811884	33811953	protein_coding	Bag2	intron	ENSMUSG00000042215	ProperStrand	3	1	-4.3017
chr5	115927222	115927313	SINE	B1_Mur4	Alu	chr5B1_Mur4115927183	NonProperStrand	6	chr5	115927340	115927440	SINE	B2_Mm2	B2	chr5B2_Mm2115927369	ProperStrand	6	6	-inf
chr19	23916760	23916780	protein_coding	Apba1	intron	ENSMUSG00000024897	NonProperStrand	168	chr9	108604853	108604956	protein_coding	Prkar2a	intron	ENSMUSG00000032601	NonProperStrand	68	1	-9.7053
chr17	39848597	39848705	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	95738600	95738640	protein_coding	Cyp2j13	intron	ENSMUSG00000028571	NonProperStrand	17	1	-3.9354
chr12	91678830	91678920	LINE	L1MC1	L1	chr12L1MC191678495	ProperStrand	1	chr17	39847778	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr15	46352960	46353061	LTR	RMER16-int	ERVK	chr15RMER16-int46352497	NonProperStrand	3	chr15	46353256	46353346	LTR	RMER16-int	ERVK	chr15RMER16-int46353103	NonProperStrand	3	3	-inf
chr5	29772794	29772874	protein_coding	Nom1	exon	ENSMUSG00000001569	ProperStrand	79	chr7	141882668	141882751	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-9.5399
chr6	143346516	143346533	DNA	MER119	MER1_type	chr6MER119143346411	NonProperStrand	1	chr9	123461930	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	83313444	83313499	protein_coding	Tet3	utr3	ENSMUSG00000034832	ProperStrand	18	chr6	83305909	83305974	protein_coding	Bola3	intron	ENSMUSG00000045160	NonProperStrand	9	1	-18.4723
chr7	19790925	19791015	protein_coding	Eml2	intron	ENSMUSG00000040811	NonProperStrand	11	chr18	60892500	60892599	protein_coding	Ndst1	intron	ENSMUSG00000054008	NonProperStrand	2	1	-20.5081
chr3	96561638	96561745	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	chr9	108534615	108541700	protein_coding	Arih2	intron	ENSMUSG00000064145	NonProperStrand	62	1	-11.4288
chr11	62345245	62349363	protein_coding	Cenpv	intron	ENSMUSG00000018509	ProperStrand	13	chr1	166112122	166127136	protein_coding	F5	intron	ENSMUSG00000026579	NonProperStrand	12	1	-18.5110
chr1	89509725	89509795	LTR	ORR1B1	MaLR	chr1ORR1B189509527	NonProperStrand	1	chr2	55464510	55464570	Simple_repeat	(GA)n	Simple_repeat	chr2(GA)n55464501	ProperStrand	1	1	-inf
chr13	23420335	23420386	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	NonProperStrand	29	chr3	86348759	86348820	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	5	-20.6718
chr17	39846445	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	24155047	24155066	protein_coding	Ank1	intron	ENSMUSG00000031543	NonProperStrand	5	1	-3.1907
chr6	72680473	72680542	protein_coding	Tcf7l1	intron	ENSMUSG00000055799	ProperStrand	279	chr5	124380280	124380334	protein_coding	Ccdc62	intron	ENSMUSG00000061882	NonProperStrand	30	1	-10.3421
chr13	23418977	23419014	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	22	chr5	31920093	31920140	protein_coding	Mrpl33	intron	ENSMUSG00000029142	ProperStrand	100	1	-13.0306
chr10	23785346	23785426	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	160	chr2	32963370	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	285	1	-6.9480
chr1	43788806	43788875	protein_coding	1500015O10Rik	intron	ENSMUSG00000026051	NonProperStrand	8	chr14	52075376	52075629	protein_coding	Vmn2r89	exon	ENSMUSG00000070448	NonProperStrand	29	1	-17.5346
chr3	96000106	96019616	SINE	B2_Mm2	B2	chr3B2_Mm296000000	ProperStrand	3	chr3	96033725	96033768	SINE	ID	ID	chr3ID96033669	NonProperStrand	4	3	-inf
chr15	98074506	98074606	LTR	MTA_Mm	MaLR	chr15MTA_Mm98074207	ProperStrand	3	chr15	98074605	98074695	SINE	B2_Mm2	B2	chr15B2_Mm298074607	ProperStrand	3	3	-inf
chr15	12230282	12232772	SINE	B4	B4	chr15B412230213	ProperStrand	1	chr18	42235531	42236591	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	NonProperStrand	45	1	-inf
chr8	34082203	34082273	LINE	L1_Mus2	L1	chr8L1_Mus234082025	ProperStrand	1	chr17	39843589	39843634	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39847160	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	64503551	64516525	protein_coding	Onecut2	intron	ENSMUSG00000045991	NonProperStrand	33	3	-3.3721
chr5	135440305	135449696	LTR	RMER17C	ERVK	chr5RMER17C135444708	ProperStrand	1	chr5	135440268	135444778	SINE	B3A	B2	chr5B3A135440198	NonProperStrand	1	1	-inf
chr14	51064806	51064828	SINE	B3A	B2	chr14B3A51064737	NonProperStrand	1	chr16	87483975	87484042	protein_coding	Cct8	utr3	ENSMUSG00000025613	ProperStrand	46	1	-inf
chr11	94142036	94142126	LTR	LTR40a	ERVL	chr11LTR40a94142027	NonProperStrand	1	chr11	94142170	94142270	SINE	RSINE1	B4	chr11RSINE194142196	NonProperStrand	1	1	-inf
chr4	133297442	133297510	protein_coding	Arid1a	intron	ENSMUSG00000007880	ProperStrand	53	chr14	21570160	21570249	protein_coding	Camk2g	intron	ENSMUSG00000021820	NonProperStrand	161	1	-10.2915
chr3	23062052	23062152	LINE	Lx2	L1	chr3Lx223061847	NonProperStrand	1	chr3	23062249	23062339	Low_complexity	T-rich	Low_complexity	chr3T-rich23062211	NonProperStrand	1	1	-inf
chr19	36817806	36817896	LINE	Lx7	L1	chr19Lx736817541	ProperStrand	1	chr19	36817955	36818055	LTR	ORR1D1	MaLR	chr19ORR1D136817901	NonProperStrand	1	1	-inf
chr15	82812175	82812268	SINE	MIRc	MIR	chr15MIRc82812121	ProperStrand	1	chr9	123461943	123461989	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	13784178	13784224	protein_coding	Tcte2	intron	ENSMUSG00000038347	NonProperStrand	137	chr5	145124652	145125591	protein_coding	Bri3	intron	ENSMUSG00000047843	ProperStrand	118	1	-9.0091
chr17	39847040	39847130	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	80357461	80357561	protein_coding	Tmprss9	intron	ENSMUSG00000059406	ProperStrand	5	1	-3.1907
chr17	35920424	35920454	SINE	PB1D9	Alu	chr17PB1D935920373	NonProperStrand	1	chr17	35919822	35919871	Simple_repeat	(CATA)n	Simple_repeat	chr17(CATA)n35919765	ProperStrand	1	1	-inf
chr17	39845958	39846001	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	86307030	86308752	protein_coding	Rnft1	intron	ENSMUSG00000020521	NonProperStrand	10	1	-5.3115
chr4	155279473	155279702	protein_coding-noncoding	Acap3	utr5	ENSMUSG00000029033	NonProperStrand	6	chr4	155279509	155279617	protein_coding	Acap3	exon	ENSMUSG00000029033	NonProperStrand	24	6	-inf
chr11	58047740	58047830	LTR	MLT1F2	MaLR	chr11MLT1F258047635	ProperStrand	5	chr11	58047832	58047932	LTR	RLTR13D3	ERVK	chr11RLTR13D358047841	NonProperStrand	4	4	-inf
chr5	146261160	146261203	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	94789927	94789946	SINE	PB1D10	Alu	chr10PB1D1094789915	NonProperStrand	4	1	-10.6768
chr14	77520313	77520390	LINE	L1Md_F	L1	chr14L1Md_F77516901	NonProperStrand	4	chr13	97190561	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr4	96536742	96536761	LINE	L1Md_F2	L1	chr4L1Md_F296534563	NonProperStrand	1	chr2	91596071	91596179	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	82	1	-inf
chr17	39846750	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	106148616	106148832	protein_coding	Tcam1	utr3	ENSMUSG00000020712	ProperStrand	4	1	-3.6552
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr10	80249196	80249237	protein_coding	Dot1l	exon	ENSMUSG00000061589	ProperStrand	91	1	-11.5529
chr1	192925590	192925639	protein_coding	Batf3	intron	ENSMUSG00000026630	NonProperStrand	1	chr4	132270077	132270186	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-inf
chr10	115179124	115179214	LINE	L1M3d	L1	chr10L1M3d115178273	NonProperStrand	1	chr10	115179549	115179649	Low_complexity	A-rich	Low_complexity	chr10A-rich115179550	ProperStrand	1	1	-inf
chr17	39846579	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	75001227	75001675	LTR	ORR1D1	MaLR	chr18ORR1D175001091	ProperStrand	3	1	-4.3017
chr8	98550872	98550973	LINE	L1MB2	L1	chr8L1MB298550897	NonProperStrand	2	chr8	98550727	98550817	SINE	B1_Mur1	Alu	chr8B1_Mur198550710	NonProperStrand	2	2	-inf
chr17	39847657	39847700	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	181113653	181113686	protein_coding	Zgpat	intron	ENSMUSG00000027582	NonProperStrand	2	1	-5.4040
chr14	26464972	26465055	protein_coding	Zmiz1	intron	ENSMUSG00000007817	NonProperStrand	61	chr8	78086941	78087014	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	1	-7.8993
chr1	115849911	115850011	lincRNA	9330185C12Rik	intron	ENSMUSG00000086520	NonProperStrand	2	chr1	108505627	108505717	protein_coding	Bcl2	intron	ENSMUSG00000057329	NonProperStrand	5	1	-inf
chr3	116931959	116932049	LINE	L1_Mus3	L1	chr3L1_Mus3116930253	ProperStrand	1	chr12	19144948	19145048	SINE	RSINE1	B4	chr12RSINE119144878	NonProperStrand	1	1	-inf
chr12	111575451	111575502	LTR	MTD	MaLR	chr12MTD111575129	ProperStrand	1	chrX	103571694	103571735	pseudogene	Gm6325	.	ENSMUSG00000081778	ProperStrand	9	1	-inf
chr17	39848099	39848157	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	146818494	146818573	LTR	MTE-int	MaLR	chr2MTE-int146818215	NonProperStrand	1	1	-inf
chr5	139269090	139269136	protein_coding	Fam20c	intron	ENSMUSG00000025854	ProperStrand	78	chr2	5379287	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0500
chr3	135444048	135444082	LINE	L1Md_F2	L1	chr3L1Md_F2135443792	NonProperStrand	1	chr3	135443578	135443700	SINE	B1F2	Alu	chr3B1F2135443553	ProperStrand	1	1	-inf
chr12	87436912	87437016	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	78	chr12	87419815	87419845	protein_coding	Tgfb3	utr5	ENSMUSG00000021253	ProperStrand	6	1	-16.2830
chr10	128048085	128048292	LINE	Lx7	L1	chr10Lx7128047532	ProperStrand	18	chr17	70963684	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-8.6254
chr13	21896986	21897040	LINE	Lx8	L1	chr13Lx821896936	ProperStrand	3	chr9	22004817	22004861	protein_coding	Zfp872	exon	ENSMUSG00000074472	ProperStrand	9	1	-21.6921
chr6	112628045	112628141	protein_coding	Rad18	intron	ENSMUSG00000030254	ProperStrand	76	chr13	97190561	97190605	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.6660
chr4	41437599	41437624	LTR	RLTR23	ERV1	chr4RLTR2341437445	NonProperStrand	3	chr9	114443030	114443051	protein_coding	Trim71	intron	ENSMUSG00000079259	NonProperStrand	16	1	-inf
chr17	39845894	39845979	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr8	119140951	119140968	protein_coding	Cdyl2	intron	ENSMUSG00000031758	NonProperStrand	5	1	-6.7797
chr2	177324998	177325098	LTR	MTA_Mm-int	MaLR	chr2MTA_Mm-int177324946	ProperStrand	1	chr6	47483078	47483168	protein_coding	Ezh2	intron	ENSMUSG00000029687	NonProperStrand	20	1	-inf
chr12	76637300	76637400	protein_coding	Ppp2r5e	intron	ENSMUSG00000021051	NonProperStrand	25	chr12	76641235	76641325	protein_coding	Ppp2r5e	intron	ENSMUSG00000021051	ProperStrand	27	1	-15.4172
chr11	79194892	79194917	protein_coding	Nf1	intron	ENSMUSG00000020716	ProperStrand	21	chr5	110798726	110798864	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	ProperStrand	131	2	-19.2416
chr14	27289404	27289485	protein_coding	Slmap	intron	ENSMUSG00000021870	NonProperStrand	191	chr18	63409403	63409423	protein_coding	Fam38b	intron	ENSMUSG00000041482	NonProperStrand	10	1	-13.3663
chr19	8943508	8944035	SINE	B4A	B4	chr19B4A8943467	ProperStrand	4	chr10	127464340	127464445	protein_coding	Prim1	intron	ENSMUSG00000025395	ProperStrand	11	1	-inf
chr9	22015587	22015677	LTR	SRV_MM-int	ERVK	chr9SRV_MM-int22014389	ProperStrand	3	chr9	22018130	22018230	LTR	SRV_MM-int	ERVK	chr9SRV_MM-int22018024	ProperStrand	2	2	-inf
chr5	47974006	47974106	LINE	L1_Mus4	L1	chr5L1_Mus447972953	ProperStrand	1	chr5	47974119	47974209	Simple_repeat	(TTTG)n	Simple_repeat	chr5(TTTG)n47974121	NonProperStrand	1	1	-inf
chr17	39846941	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	152070334	152070421	SINE	PB1D10	Alu	chr1PB1D10152070339	ProperStrand	1	1	-inf
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chrX	93309577	93309636	protein_coding	Msn	intron	ENSMUSG00000031207	NonProperStrand	27	1	-15.8738
chr9	64178513	64178529	protein_coding	Dis3l	intron	ENSMUSG00000032396	ProperStrand	29	chr19	10621563	10621614	protein_coding	Cpsf7	utr3	ENSMUSG00000034820	ProperStrand	82	1	-12.8650
chr17	39846664	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	37994988	37995078	SINE	B3	B2	chr7B337994969	ProperStrand	2	1	-5.3533
chr2	131293442	131296280	SINE	B3	B2	chr2B3131293338	NonProperStrand	2	chr2	131296282	131296382	Simple_repeat	(TA)n	Simple_repeat	chr2(TA)n131296281	ProperStrand	2	2	-inf
chr15	76183706	76183796	protein_coding-noncoding	Maf1	utr5	ENSMUSG00000022553	NonProperStrand	6	chr15	76183557	76183657	protein_coding	Maf1	exon	ENSMUSG00000022553	NonProperStrand	26	5	-inf
chr8	3510445	3510545	protein_coding-noncoding	Mcoln1	utr5	ENSMUSG00000004567	ProperStrand	6	chr8	3509232	3510406	protein_coding	Mcoln1	exon	ENSMUSG00000004567	ProperStrand	8	6	-inf
chr10	128047693	128047793	LINE	Lx7	L1	chr10Lx7128047532	ProperStrand	18	chr10	128046750	128047691	SINE	B1_Mus2	Alu	chr10B1_Mus2128046724	ProperStrand	2	1	-20.2142
chr4	56767819	56769046	protein_coding-noncoding	Ikbkap	utr3	ENSMUSG00000028431	ProperStrand	1	chr4	56762299	56767841	protein_coding	Ikbkap	utr3	ENSMUSG00000028431	ProperStrand	109	1	-inf
chr6	115648974	115649074	LTR	RLTR33	ERVK	chr6RLTR33115648854	ProperStrand	2	chr6	115649073	115649163	SINE	B2_Mm2	B2	chr6B2_Mm2115649059	ProperStrand	2	2	-inf
chr6	3201216	3201405	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	114843398	114843467	LTR	RLTR25B	ERVK	chr8RLTR25B114843361	ProperStrand	3	1	-9.0398
chr11	77695666	77695718	protein_coding	Pipox	exon	ENSMUSG00000017453	NonProperStrand	11	chr2	5379293	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.9362
chr8	106606367	106606462	LINE	L1Md_F2	L1	chr8L1Md_F2106602928	ProperStrand	62	chr8	106625554	106625587	protein_coding	Cdh5	utr5	ENSMUSG00000031871	ProperStrand	143	1	-10.2133
chr7	79695386	79695476	LTR	RMER15	ERVL	chr7RMER1579695328	NonProperStrand	1	chr8	107056719	107056735	protein_coding	Nae1	intron	ENSMUSG00000031878	NonProperStrand	10	1	-inf
chr13	95931378	95931425	protein_coding	Pde8b	intron	ENSMUSG00000021684	ProperStrand	31	chr19	6313429	6313695	protein_coding	Cdc42bpg	exon	ENSMUSG00000024769	ProperStrand	92	1	-12.4980
chr4	3835064	3835147	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr1	59704298	59704335	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	1	-11.8619
chr17	39847658	39847699	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	110708511	110708542	Low_complexity	CT-rich	Low_complexity	chr8CT-rich110708485	ProperStrand	2	2	-inf
chr17	39846660	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	119738555	119738627	SINE	PB1	Alu	chr10PB1119738541	NonProperStrand	1	1	-inf
chr12	78350924	78350998	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr9	58463514	58463595	protein_coding	Nptn	intron	ENSMUSG00000032336	ProperStrand	68	1	-5.6505
chr11	121283082	121283168	protein_coding	Fn3krp	intron	ENSMUSG00000039253	ProperStrand	3	chr5	21783189	21783232	protein_coding	Reln	intron	ENSMUSG00000042453	ProperStrand	45	2	-inf
chr1	71645621	71645655	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	chr2	5379297	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.0695
chr17	84982944	84983034	protein_coding	Plekhh2	intron	ENSMUSG00000040852	ProperStrand	89	chr13	45773660	45773760	protein_coding	Atxn1	intron	ENSMUSG00000046876	ProperStrand	103	1	-10.1443
chr19	45426301	45426391	LTR	ORR1B1-int	MaLR	chr19ORR1B1-int45426248	NonProperStrand	1	chr19	45426399	45426499	SINE	PB1D9	Alu	chr19PB1D945426416	NonProperStrand	1	1	-inf
chr5	115068969	115069059	SINE	B3	B2	chr5B3115068954	NonProperStrand	1	chr5	115068832	115068933	SINE	RSINE1	B4	chr5RSINE1115068791	NonProperStrand	1	1	-inf
chr15	64047434	64047476	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	chr9	53621171	53621223	protein_coding	Slc35f2	intron	ENSMUSG00000042195	NonProperStrand	16	1	-11.3283
chr7	17035196	17035223	LTR	RMER16-int	ERVK	chr7RMER16-int17034908	NonProperStrand	1	chr16	5239925	5239942	protein_coding	Alg1	intron	ENSMUSG00000039427	ProperStrand	17	1	-inf
chr11	77789453	77789553	protein_coding	Sez6	intron	ENSMUSG00000000632	ProperStrand	109	chr2	127578711	127580908	protein_coding	Nphp1	intron	ENSMUSG00000027378	ProperStrand	10	1	-14.4909
chr9	114748553	114748610	protein_coding	Cmtm8	intron	ENSMUSG00000041012	NonProperStrand	39	chr5	122455362	122455453	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	145	1	-11.1202
chr1	44864906	44864925	LINE	Lx2B	L1	chr1Lx2B44864714	NonProperStrand	1	chr17	39846441	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	66719325	66719415	LINE	L1Md_F2	L1	chr8L1Md_F266719126	NonProperStrand	1	chr8	66719019	66719119	LTR	MT2B	ERVL	chr8MT2B66719033	ProperStrand	1	1	-inf
chr15	79960760	79960835	SINE	B1_Mus2	Alu	chr15B1_Mus279960730	NonProperStrand	1	chr15	79950404	79950475	SINE	B4A	B4	chr15B4A79950267	ProperStrand	8	1	-inf
chr15	47539994	47540119	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	2	-10.9215
chr10	3982848	3982887	LTR	RLTR6-int	ERV1	chr10RLTR6-int3982691	NonProperStrand	1	chr13	44869579	44869628	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr16	20332693	20333700	protein_coding	Abcc5	intron	ENSMUSG00000022822	ProperStrand	63	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-11.1315
chr9	65201724	65201753	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-7.6686
chr6	72766604	72766704	DNA	Tigger5	MER2_type	chr6Tigger572766558	ProperStrand	1	chr6	72766700	72766790	LTR	ORR1A2	MaLR	chr6ORR1A272766717	NonProperStrand	2	1	-inf
chr17	39848325	39848395	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	121174154	121174214	protein_coding	Tuba8	intron	ENSMUSG00000030137	ProperStrand	21	1	-3.2798
chr7	96228059	96228149	LINE	L1M5	L1	chr7L1M596227789	NonProperStrand	10	chr5	132514406	132514506	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	2	-17.2175
chr9	114906060	114906123	SINE	ID_B1	B4	chr9ID_B1114906065	ProperStrand	1	chr9	114906878	114906936	SINE	ID_B1	B4	chr9ID_B1114906872	NonProperStrand	1	1	-inf
chrX	151547853	151550850	LINE	L1VL4	L1	chrXL1VL4151544933	ProperStrand	2	chrX	151550905	151552499	LINE	MusHAL1	L1	chrXMusHAL1151550739	ProperStrand	1	1	-inf
chr10	94011436	94011536	protein_coding	Tmcc3	intron	ENSMUSG00000020023	NonProperStrand	36	chr10	94295836	94295926	protein_coding	Plxnc1	intron	ENSMUSG00000074785	ProperStrand	2	1	-20.3707
chr3	8666898	8666914	protein_coding	Hey1	utr5	ENSMUSG00000040289	ProperStrand	13	chr17	30494317	30494420	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-10.3423
chr11	72743375	72743414	LTR	MTE-int	MaLR	chr11MTE-int72743140	NonProperStrand	1	chr13	37891577	37891684	protein_coding	Rreb1	intron	ENSMUSG00000039087	ProperStrand	91	1	-inf
chr9	55655724	55655809	protein_coding	Scaper	intron	ENSMUSG00000034007	ProperStrand	71	chr7	133072306	133072363	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-4.8558
chr1	157299168	157411740	SINE	B4	B4	chr1B4157299129	ProperStrand	13	chr1	157411748	157411838	protein_coding	Acbd6	intron	ENSMUSG00000033701	NonProperStrand	23	13	-inf
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr5	118630802	118630927	protein_coding	Hrk	intron	ENSMUSG00000046607	ProperStrand	51	2	-inf
chr4	55390226	55390296	protein_coding	Rad23b	intron	ENSMUSG00000028426	ProperStrand	31	chr12	91351754	91351791	protein_coding	Nrxn3	intron	ENSMUSG00000066392	NonProperStrand	182	1	-11.1301
chr11	107283430	107283461	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	chr6	122916961	122916982	protein_coding	Clec4a3	intron	ENSMUSG00000043832	NonProperStrand	1	1	-inf
chrX	142373606	142373664	LINE	Lx4A	L1	chrXLx4A142373604	ProperStrand	1	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	109011652	109011701	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	45571468	45571510	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	1	-5.4171
chr18	33908134	33908167	LTR	MTD	MaLR	chr18MTD33907808	ProperStrand	1	chr11	116852260	116852603	SINE	B2_Mm2	B2	chr11B2_Mm2116852159	ProperStrand	11	1	-inf
chr1	151922507	151922612	lincRNA	7530420F21Rik	exon	ENSMUSG00000084952	ProperStrand	7	chr6	39412103	39412150	misc_RNA	AC153624.1	.	ENSMUSG00000093287	NonProperStrand	1	1	-inf
chr6	3201474	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	70565509	70565585	antisense	Gm12320	.	ENSMUSG00000085502	NonProperStrand	10	1	-6.3611
chr10	40258547	40258621	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr3	86509504	86509588	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	138	1	-3.7677
chr17	35384462	35384562	protein_coding	Ddx39b	intron	ENSMUSG00000019432	NonProperStrand	9	chr11	81140896	81140987	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	161	1	-13.9310
chr2	167065279	167065310	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr14	63887362	63887383	protein_coding	Gata4	intron	ENSMUSG00000021944	NonProperStrand	33	1	-12.6274
chr5	146261022	146261044	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	48409339	48409799	protein_coding	Sspo	intron	ENSMUSG00000029797	ProperStrand	31	1	-6.3617
chr4	150308614	150308714	protein_coding	Tnfrsf9	intron	ENSMUSG00000028965	ProperStrand	158	chr9	73338866	73338882	protein_coding	Unc13c	intron	ENSMUSG00000062151	NonProperStrand	17	1	-12.6411
chr13	76001252	76001360	LTR	RLTR10-int	ERVK	chr13RLTR10-int76000842	NonProperStrand	1	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	1	-inf
chr11	96819907	96819997	protein_coding	Sp2	intron	ENSMUSG00000018678	ProperStrand	39	chr16	23110829	23110929	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-12.7629
chr17	35510402	35510443	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	chr15	102029103	102029122	SINE	B1_Mur1	Alu	chr15B1_Mur1102029067	ProperStrand	2	1	-17.9379
chr6	108152320	108153181	SINE	B1_Mus1	Alu	chr6B1_Mus1108153057	ProperStrand	2	chr6	108144658	108152280	SINE	B4	B4	chr6B4108152205	ProperStrand	2	2	-inf
chr10	83429495	83429561	LINE	L1MEf	L1	chr10L1MEf83429105	ProperStrand	2	chr12	67667937	67668017	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-18.7369
chr15	99126794	99126884	protein_coding	Prpf40b	intron	ENSMUSG00000023007	ProperStrand	26	chr15	99186019	99199232	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	2	-20.5757
chr17	39847636	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	121987870	121994481	protein_coding	Trim69	intron	ENSMUSG00000033368	ProperStrand	9	2	-3.9821
chr17	39847856	39847991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	102433276	102433293	SINE	B1_Mus1	Alu	chr11B1_Mus1102433162	ProperStrand	3	1	-4.3512
chr16	28294988	28295078	protein_coding	Fgf12	intron	ENSMUSG00000022523	NonProperStrand	8	chr1	32378531	32378631	protein_coding	Khdrbs2	intron	ENSMUSG00000026058	NonProperStrand	21	1	-18.3864
chr17	39846414	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	33652213	33652281	SINE	B3	B2	chr17B333652078	ProperStrand	1	1	-inf
chr17	39846582	39846634	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	29121493	29121535	protein_coding	Supt5h	intron	ENSMUSG00000003435	ProperStrand	3	1	-4.3017
chr5	33518145	33518267	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	252	chr18	25195016	25195049	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	265	1	-6.1966
chr6	115782846	115785204	antisense	BC060267	.	ENSMUSG00000030321	NonProperStrand	8	chr6	115791314	115791693	protein_coding	Mbd4	utr3	ENSMUSG00000030322	NonProperStrand	23	3	-inf
chr1	53811235	53811252	LINE	L1_Mus2	L1	chr1L1_Mus253808363	ProperStrand	1	chr1	122357183	122357235	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	1	-inf
chr11	95959114	95959213	LTR	ORR1C2	MaLR	chr11ORR1C295959107	NonProperStrand	1	chr2	167065280	167065328	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	1	-inf
chr9	62904878	62904978	LTR	RLTR20C	ERVK	chr9RLTR20C62904883	ProperStrand	1	chr9	62905063	62905153	LTR	RLTR20C	ERVK	chr9RLTR20C62905013	ProperStrand	1	1	-inf
chr2	21982741	21982831	LINE	Lx3_Mus	L1	chr2Lx3_Mus21982271	NonProperStrand	2	chr13	55091852	55091914	protein_coding	Unc5a	intron	ENSMUSG00000025876	NonProperStrand	30	1	-21.6628
chr17	39846418	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	122185185	122185269	protein_coding	Shf	utr5	ENSMUSG00000033256	ProperStrand	2	1	-5.3533
chr1	179320507	179320561	LINE	L1MA4	L1	chr1L1MA4179320280	ProperStrand	2	chr1	179318270	179318314	LTR	RLTR40	ERVK	chr1RLTR40179318225	NonProperStrand	1	1	-inf
chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr8	41412426	41412495	protein_coding	Efha2	intron	ENSMUSG00000039478	NonProperStrand	7	1	-8.8922
chr3	107106549	107106565	protein_coding	Slc16a4	intron	ENSMUSG00000027896	ProperStrand	1	chr2	39004746	39004772	protein_coding	Scai	intron	ENSMUSG00000035236	ProperStrand	67	1	-inf
chr7	116448696	116448713	protein_coding	Stk33	intron	ENSMUSG00000031027	NonProperStrand	13	chr14	20699470	20699497	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	1	-13.3825
chr7	66136694	66136794	LINE	L1_Mur3	L1	chr7L1_Mur366136649	ProperStrand	1	chr7	66136571	66136661	LTR	ORR1A4	MaLR	chr7ORR1A466136308	NonProperStrand	1	1	-inf
chr8	120496818	120496919	LINE	L1MB7	L1	chr8L1MB7120496805	ProperStrand	4	chr8	120496675	120496765	LINE	L3	CR1	chr8L3120496666	NonProperStrand	7	2	-inf
chr6	125097208	125100520	protein_coding	Iffo1	intron	ENSMUSG00000038271	ProperStrand	44	chr2	91670944	91670960	protein_coding	Ambra1	intron	ENSMUSG00000040506	NonProperStrand	61	1	-12.6151
chr6	29562880	29562931	SINE	B3	B2	chr6B329562817	NonProperStrand	1	chr6	93141343	93141449	lincRNA	9530026P05Rik	intron	ENSMUSG00000087573	ProperStrand	66	1	-inf
chrX	157445983	157446084	LINE	Lx5	L1	chrXLx5157445314	NonProperStrand	1	chr17	39847572	39847619	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	6259309	6259394	SINE	B1_Mm	Alu	chr11B1_Mm6259236	NonProperStrand	2	chr11	6259433	6259502	SINE	B2_Mm2	B2	chr11B2_Mm26259385	NonProperStrand	1	1	-inf
chr7	105862188	105862278	protein_coding	Prkrir	intron	ENSMUSG00000030753	ProperStrand	5	chr11	87452916	87453016	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	342	1	-13.7043
chr7	102014328	102014408	LTR	MTEa	MaLR	chr7MTEa102014180	ProperStrand	3	chr9	59679017	59679081	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-12.6288
chr17	39846645	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	28037462	28037489	SINE	B1_Mus2	Alu	chr17B1_Mus228037437	NonProperStrand	2	1	-5.3533
chr17	39847659	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	90121001	90121029	SINE	B3	B2	chr3B390120991	NonProperStrand	1	1	-inf
chr2	103463325	103463360	protein_coding	Abtb2	intron	ENSMUSG00000032724	NonProperStrand	27	chr14	117639456	117639531	protein_coding	Gpc6	intron	ENSMUSG00000058571	ProperStrand	66	1	-13.4459
chr6	3201469	3201509	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	36231280	36231423	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	31	2	-6.9228
chr16	24984417	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	chr13	44869573	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-4.5505
chr10	121591663	121591683	LINE	L1Md_A	L1	chr10L1Md_A121589921	ProperStrand	6	chr9	123462082	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr11	79346942	79346969	protein_coding	Nf1	intron	ENSMUSG00000020716	ProperStrand	21	chr11	107093584	107093670	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-10.8579
chr1	180832303	180832321	antisense	Gm16564	.	ENSMUSG00000089713	ProperStrand	1	chr8	13417130	13417250	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	13	1	-inf
chr11	31669945	31670035	LTR	ORR1E	MaLR	chr11ORR1E31669964	NonProperStrand	3	chr11	31669852	31669952	SINE	RSINE1	B4	chr11RSINE131669821	ProperStrand	3	3	-inf
chr2	20576630	20576699	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	chr16	44221678	44221768	protein_coding	Gm608	exon	ENSMUSG00000068284	ProperStrand	29	1	-10.1121
chr1	82733140	82733230	protein_coding-noncoding	Mff	utr5	ENSMUSG00000026150	ProperStrand	2	chr1	82733298	82733398	protein_coding	Mff	intron	ENSMUSG00000026150	ProperStrand	14	2	-inf
chr3	88486745	88486818	LINE	Lx9	L1	chr3Lx988486752	NonProperStrand	1	chr3	88488072	88488155	Low_complexity	GA-rich	Low_complexity	chr3GA-rich88488049	ProperStrand	2	1	-inf
chr11	73194914	73194983	LINE	L1_Mur1	L1	chr11L1_Mur173194806	ProperStrand	2	chr11	73194696	73194758	LTR	RLTR13D3	ERVK	chr11RLTR13D373194636	NonProperStrand	1	1	-inf
chr14	76450630	76450715	LTR	RLTR1B-int	ERV1	chr14RLTR1B-int76450347	ProperStrand	1	chr14	31135549	31135702	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	1	-inf
chr6	35109360	35109437	LTR	MTA_Mm	MaLR	chr6MTA_Mm35109304	ProperStrand	1	chr6	35111156	35111203	LTR	MTA_Mm	MaLR	chr6MTA_Mm35110960	ProperStrand	1	1	-inf
chr15	102338022	102338048	protein_coding-noncoding	Map3k12	utr3	ENSMUSG00000023050	ProperStrand	14	chr5	117590771	117590883	protein_coding	Taok3	intron	ENSMUSG00000061288	ProperStrand	16	1	-17.6629
chr17	39847440	39847537	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	91888157	91888173	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	4	1	-3.7035
chr17	39848330	39848362	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr4	133075850	133075934	protein_coding	1810019J16Rik	intron	ENSMUSG00000037600	ProperStrand	13	1	-4.1930
chr5	62433928	62434028	LTR	RLTR20B2	ERVK	chr5RLTR20B262433550	NonProperStrand	1	chr1	79607141	79607231	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	10	1	-inf
chr9	103702956	103702993	LINE	L1Md_A	L1	chr9L1Md_A103699451	NonProperStrand	4	chr9	103708491	103708593	LTR	MTEa	MaLR	chr9MTEa103708366	ProperStrand	1	1	-inf
chr11	120074943	120074993	LTR	MTC-int	MaLR	chr11MTC-int120074944	NonProperStrand	1	chr2	5379240	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr1	136364892	136364954	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr6	118078242	118078260	protein_coding	Csgalnact2	intron	ENSMUSG00000042042	NonProperStrand	3	1	-16.7351
chr5	123745091	123749390	antisense	Gm15857	.	ENSMUSG00000087063	ProperStrand	7	chr15	44619741	44619770	lincRNA	2310069G16Rik	intron	ENSMUSG00000085947	ProperStrand	2	1	-21.4874
chr17	39848001	39848033	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	76516279	76516296	protein_coding	Nufip1	intron	ENSMUSG00000022009	NonProperStrand	2	1	-5.4040
chr12	82260151	82260240	protein_coding	Smoc1	intron	ENSMUSG00000021136	ProperStrand	176	chr6	72807022	72807055	protein_coding	Kcmf1	intron	ENSMUSG00000055239	NonProperStrand	5	1	-15.0388
chr6	34902241	34902290	protein_coding	2010107G12Rik	intron	ENSMUSG00000029847	ProperStrand	21	chr9	118543561	118543636	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	213	1	-11.6087
chr17	39846759	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	115272613	115272653	protein_coding	2610524H06Rik	exon	ENSMUSG00000092486	ProperStrand	4	1	-3.6552
chr10	88475388	88475405	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	37	chr7	96330176	96330311	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-9.8749
chr2	34150835	34150857	antisense	C79798	.	ENSMUSG00000084908	ProperStrand	3	chr7	123317811	123317908	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	1	-16.1342
chr6	131371838	131371938	LINE	Lx6	L1	chr6Lx6131370997	ProperStrand	3	chr6	131371939	131372029	LINE	Lx6	L1	chr6Lx6131371922	ProperStrand	3	1	-20.2168
chr7	66088768	66088831	SINE	B4A	B4	chr7B4A66088610	NonProperStrand	1	chr9	123461983	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	116757702	116757744	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr12	21415170	21415268	protein_coding	Ywhaq	intron	ENSMUSG00000076432	ProperStrand	53	1	-12.8981
chr1	112527767	112527867	LINE	L1_Mm	L1	chr1L1_Mm112527372	NonProperStrand	1	chr1	112528216	112528306	LINE	Lx	L1	chr1Lx112527999	NonProperStrand	1	1	-inf
chr9	111195526	111195626	DNA	MER115	Tip100	chr9MER115111195313	ProperStrand	1	chr9	111195705	111195795	DNA	URR1A	MER1_type	chr9URR1A111195636	ProperStrand	1	1	-inf
chr17	39845445	39845545	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr3	12519329	12519419	LINE	L1Md_T	L1	chr3L1Md_T12514563	NonProperStrand	1	1	-inf
chr6	105492424	105492513	SINE	B1_Mm	Alu	chr6B1_Mm105492415	ProperStrand	7	chr9	121328085	121328185	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	242	3	-inf
chr17	39846596	39846851	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	9900617	9900633	Low_complexity	AT_rich	Low_complexity	chr10AT_rich9900615	ProperStrand	9	2	-3.9140
chr11	73035969	73036038	protein_coding	Shpk	intron	ENSMUSG00000005951	ProperStrand	22	chr13	44869589	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.4623
chr11	75616045	75616145	antisense	Gm12339	.	ENSMUSG00000087059	NonProperStrand	3	chr17	36030085	36030175	protein_coding	2310061I04Rik	intron	ENSMUSG00000050705	ProperStrand	1	1	-inf
chr1	136364891	136364949	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr3	87857961	87858051	protein_coding	Gpatch4	intron	ENSMUSG00000028069	NonProperStrand	5	1	-15.5510
chr10	42274385	42274486	SINE	B3	B2	chr10B342274358	ProperStrand	4	chr16	23108954	23109017	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	3	-inf
chr11	12399276	12399366	LTR	RMER17B	ERVK	chr11RMER17B12399248	NonProperStrand	3	chr11	12399116	12399216	LTR	RMER5	ERV1	chr11RMER512398987	NonProperStrand	1	1	-inf
chr9	110281285	110281342	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr2	20538403	20538506	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-4.2718
chr6	141653079	141653169	LINE	L1Md_F2	L1	chr6L1Md_F2141650848	NonProperStrand	1	chr6	141653443	141653543	LINE	L1_Mus2	L1	chr6L1_Mus2141653402	NonProperStrand	1	1	-inf
chr8	35132219	35132238	LTR	ORR1A0	MaLR	chr8ORR1A035132087	ProperStrand	2	chr14	47406352	47406401	protein_coding	Cnih	intron	ENSMUSG00000015759	ProperStrand	19	1	-20.1864
chr16	4563763	4563863	SINE	B3	B2	chr16B34563770	NonProperStrand	1	chr16	4563610	4563700	SINE	PB1D7	Alu	chr16PB1D74563570	ProperStrand	1	1	-inf
chr9	123201714	123201814	Low_complexity	CT-rich	Low_complexity	chr9CT-rich123201709	NonProperStrand	1	chr9	123201865	123201955	SINE	ID_B1	B4	chr9ID_B1123201804	ProperStrand	1	1	-inf
chr17	70963685	70963781	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr4	101424294	101424313	protein_coding	Lepr	intron	ENSMUSG00000057722	NonProperStrand	24	1	-8.0398
chr5	150154369	150154438	SINE	B1_Mur2	Alu	chr5B1_Mur2150154278	NonProperStrand	1	chr9	110281297	110281343	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr12	111597625	111597715	LINE	Lx2	L1	chr12Lx2111595702	ProperStrand	5	chr12	111597795	111597895	LINE	Lx8	L1	chr12Lx8111597802	NonProperStrand	1	1	-inf
chr14	63140083	63140183	LINE	Lx7	L1	chr14Lx763140093	ProperStrand	11	chr14	63139990	63140080	SINE	B2_Mm2	B2	chr14B2_Mm263139982	ProperStrand	2	2	-inf
chr5	146261159	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	7171249	7171333	protein_coding	Macrod1	intron	ENSMUSG00000036278	ProperStrand	112	1	-3.8737
chr8	114840847	114840873	LTR	RMER20B	ERVK	chr8RMER20B114840510	NonProperStrand	2	chr6	122780422	122780481	protein_coding	Foxj2	intron	ENSMUSG00000003154	NonProperStrand	16	1	-inf
chr4	135692776	135692887	SINE	B1F2	Alu	chr4B1F2135692731	ProperStrand	1	chr17	34533843	34533883	pseudogene	Gm15320	.	ENSMUSG00000082103	ProperStrand	6	1	-inf
chr16	26295214	26295232	LINE	Lx8	L1	chr16Lx826294580	ProperStrand	2	chr17	39846656	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr19	30084554	30084654	LINE	L1M4c	L1	chr19L1M4c30084556	ProperStrand	2	chr19	30084391	30084481	LTR	RMER17C	ERVK	chr19RMER17C30084283	NonProperStrand	2	2	-inf
chr8	116956319	116956409	LTR	ORR1D1	MaLR	chr8ORR1D1116956216	NonProperStrand	1	chr8	116956450	116956552	LTR	ORR1D2	MaLR	chr8ORR1D2116956410	ProperStrand	1	1	-inf
chr2	168601390	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	chr11	88461341	88461441	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-8.0959
chr1	136364888	136364954	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr13	35781199	35781255	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-6.8695
chr5	121452310	121452377	protein_coding	Rph3a	intron	ENSMUSG00000029608	ProperStrand	32	chrX	13291264	13291431	protein_coding	Cask	intron	ENSMUSG00000031012	NonProperStrand	158	1	-11.3488
chr17	70963742	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr14	56406582	56406623	protein_coding	Ripk3	intron	ENSMUSG00000022221	NonProperStrand	2	1	-13.6443
chr16	35085944	35085970	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	chr8	127211193	127211229	protein_coding	Ttc13	intron	ENSMUSG00000037300	NonProperStrand	38	1	-10.7509
chr1	159924701	159924717	LINE	L1MC4	L1	chr1L1MC4159924073	ProperStrand	1	chr17	39846353	39846448	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	114671395	114671431	protein_coding	Cmtm7	intron	ENSMUSG00000032436	ProperStrand	11	chr4	141070410	141070515	protein_coding	Spen	intron	ENSMUSG00000040761	ProperStrand	77	1	-14.9964
chr10	31608550	31608599	LINE	L1_Mus3	L1	chr10L1_Mus331608101	ProperStrand	2	chr17	39846952	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr13	94818569	94818669	LINE	L1M4	L1	chr13L1M494818557	NonProperStrand	1	chr13	94818448	94818538	LTR	MT2B2	ERVL	chr13MT2B294817962	ProperStrand	1	1	-inf
chr9	123461931	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	83977645	84105670	protein_coding	Dysf	intron	ENSMUSG00000033788	ProperStrand	55	3	-4.1623
chr5	23575643	23575723	LTR	RLTR33	ERVK	chr5RLTR3323575626	NonProperStrand	1	chr9	118674951	118674988	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr17	39847611	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	52792262	52792305	SINE	B2_Mm1a	B2	chr5B2_Mm1a52792208	NonProperStrand	1	1	-inf
chr8	33913445	33914348	LINE	L1Md_F2	L1	chr8L1Md_F233912349	NonProperStrand	13	chr8	33914405	33914788	LINE	L1Md_F2	L1	chr8L1Md_F233914338	NonProperStrand	7	5	-inf
mmu-miR-7667-5p	0	19	miRNA	mmu-miR-7667-5p	.	mmu-miR-7667-5p	NonProperStrand	2	chr2	29886714	29886840	protein_coding	Spna2	utr3	ENSMUSG00000057738	NonProperStrand	3	1	-20.8297
chr2	127030022	127030112	protein_coding-noncoding	1810024B03Rik	utr3	ENSMUSG00000044145	NonProperStrand	1	chr2	127030562	127030662	protein_coding	1810024B03Rik	intron	ENSMUSG00000044145	NonProperStrand	6	1	-inf
chr15	55637952	55637969	protein_coding	Sntb1	intron	ENSMUSG00000060429	ProperStrand	29	chr2	152094648	152094737	protein_coding	Csnk2a1	intron	ENSMUSG00000074698	NonProperStrand	14	1	-16.4189
chrX	87238364	87238399	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr12	17277250	17277295	protein_coding	Pdia6	exon	ENSMUSG00000020571	ProperStrand	22	1	-11.5137
chr17	39847330	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	19255143	19255225	SINE	ID_B1	B4	chr3ID_B119255017	ProperStrand	1	1	-inf
chr12	111013499	111013527	LTR	ORR1C1	MaLR	chr12ORR1C1111013503	ProperStrand	1	chr3	116654206	116654271	protein_coding	Palmd	intron	ENSMUSG00000033377	ProperStrand	33	1	-inf
chr17	39846009	39846127	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr3	83906314	83906333	protein_coding	Mnd1	intron	ENSMUSG00000033752	NonProperStrand	5	1	-6.7797
chr3	69042955	69043045	LINE	L1MC4	L1	chr3L1MC469042948	NonProperStrand	1	chr18	74778391	74778491	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	68	1	-inf
chr7	69269634	69269724	LINE	L1Md_F2	L1	chr7L1Md_F269268851	ProperStrand	1	chr7	69270051	69270151	LINE	L1Md_F2	L1	chr7L1Md_F269269812	ProperStrand	1	1	-inf
chr5	138133922	138133939	SINE	B3	B2	chr5B3138133868	NonProperStrand	2	chr7	138845139	138845236	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-16.3215
chr10	50771726	50771797	LINE	L1VL4	L1	chr10L1VL450770110	NonProperStrand	2	chr2	5379280	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-11.9279
chr4	151989764	151989781	SINE	B1_Mur1	Alu	chr4B1_Mur1151989753	ProperStrand	1	chr2	24996142	24996204	lincRNA	Gm13387	intron	ENSMUSG00000087028	NonProperStrand	11	1	-inf
chr7	12926587	12926639	LINE	L1Md_F	L1	chr7L1Md_F12926473	ProperStrand	6	chr17	39848099	39848161	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.7734
chr4	128993341	128993431	lincRNA	Gm17525	intron	ENSMUSG00000091673	ProperStrand	6	chr4	128999192	129002183	protein_coding	Rbbp4	intron	ENSMUSG00000057236	NonProperStrand	17	1	-19.6461
chr7	10258589	10258660	LINE	L1Md_F2	L1	chr7L1Md_F210257977	ProperStrand	1	chr17	39847378	39847417	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	123461948	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr4	43655097	43655194	protein_coding	Npr2	intron	ENSMUSG00000028469	NonProperStrand	2	1	-8.0983
chr11	104428691	104428803	protein_coding	Myl4	intron	ENSMUSG00000061086	NonProperStrand	21	chr4	34950755	34950774	protein_coding	Mob3b	intron	ENSMUSG00000073910	ProperStrand	86	1	-13.4278
chr4	44012625	44012696	LINE	Lx7	L1	chr4Lx744012152	ProperStrand	13	chr13	97190581	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.1850
chr4	115811458	115811479	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	chr6	125049931	125050036	protein_coding	Chd4	intron	ENSMUSG00000063870	ProperStrand	17	1	-15.2546
chr9	123462036	123462126	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	146766248	146773370	protein_coding	Arntl2	intron	ENSMUSG00000040187	ProperStrand	11	2	-7.1466
chr2	151110064	151110154	LINE	L1Md_A	L1	chr2L1Md_A151109061	NonProperStrand	1	chr12	67667922	67668022	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr7	135017296	135017415	protein_coding-noncoding	Zfp668	utr3	ENSMUSG00000049728	NonProperStrand	4	chr7	135017163	135017523	protein_coding	Zfp668	intron	ENSMUSG00000049728	NonProperStrand	18	4	-inf
chr17	39847216	39847248	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	117809704	117809726	SINE	B2_Mm1a	B2	chr11B2_Mm1a117809559	ProperStrand	1	1	-inf
chr2	16252042	16252142	LTR	MYSERV-int	ERVK	chr2MYSERV-int16251753	ProperStrand	1	chr2	16314660	16314750	protein_coding	Plxdc2	intron	ENSMUSG00000026748	NonProperStrand	13	1	-inf
chr4	136050322	136050377	protein_coding	Luzp1	intron	ENSMUSG00000001089	NonProperStrand	42	chr13	44869602	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.1817
chr6	87628660	87628683	lincRNA	1810020O05Rik	intron	ENSMUSG00000089997	ProperStrand	5	chr18	7880524	7880605	protein_coding	Wac	intron	ENSMUSG00000024283	ProperStrand	36	1	-18.3288
chr4	21871573	21873623	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	ProperStrand	29	chr6	34310969	34311945	protein_coding	Akr1b8	intron	ENSMUSG00000029762	NonProperStrand	44	1	-14.1177
chr17	39843483	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	46162154	46162982	protein_coding	Ncbp1	intron	ENSMUSG00000028330	ProperStrand	21	1	-4.5038
chr10	52347973	52348072	LINE	Lx7	L1	chr10Lx752347691	ProperStrand	1	chr10	42458349	42458439	LTR	RMER20B	ERVK	chr10RMER20B42458273	NonProperStrand	1	1	-inf
chr17	56044066	56044108	LTR	RLTR25A	ERVK	chr17RLTR25A56043966	ProperStrand	1	chr12	3451940	3451990	protein_coding-noncoding	Asxl2	utr5	ENSMUSG00000037486	ProperStrand	3	1	-inf
chr17	39843827	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr9	105426589	105426627	protein_coding	Atp2c1	intron	ENSMUSG00000032570	ProperStrand	10	1	-6.4551
chr17	70963690	70963790	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr9	62811196	62811286	protein_coding	Pias1	intron	ENSMUSG00000032405	ProperStrand	111	1	-5.0061
chr12	80192415	80193699	LINE	L1MDa	L1	chr12L1MDa80192813	ProperStrand	5	chr16	87408068	87408092	protein_coding	Ltn1	intron	ENSMUSG00000052299	ProperStrand	28	1	-18.8243
chr9	109996964	109997042	protein_coding	Dhx30	intron	ENSMUSG00000032480	NonProperStrand	23	chr13	97190561	97190613	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr17	70963693	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr8	14969589	14969631	protein_coding	Arhgef10	intron	ENSMUSG00000071176	ProperStrand	37	1	-7.1683
chr12	110859832	110859895	lincRNA	Rian	intron	ENSMUSG00000091793	NonProperStrand	7	chr2	113535116	113535189	protein_coding	Fmn1	intron	ENSMUSG00000044042	ProperStrand	31	1	-17.8024
chr17	34125831	34125864	LTR	MERVL_2A-int	ERVL	chr17MERVL_2A-int34125071	ProperStrand	2	chr6	65818615	65818720	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-17.0158
chr1	52645448	52648811	LTR	IAPEz-int	ERVK	chr1IAPEz-int52647172	ProperStrand	5	chr1	52645308	52645398	SINE	B3	B2	chr1B352645238	ProperStrand	5	3	-inf
chr11	121251200	121251290	LTR	MT2A	ERVL	chr11MT2A121251204	NonProperStrand	1	chr11	121251098	121251198	LTR	MTEa	MaLR	chr11MTEa121251098	NonProperStrand	1	1	-inf
chr17	5840039	5840059	LTR	MTD	MaLR	chr17MTD5839857	ProperStrand	1	chr17	5841972	5842002	protein_coding	Snx9	intron	ENSMUSG00000002365	NonProperStrand	21	1	-inf
chr5	110408350	110408450	LINE	L1Md_T	L1	chr5L1Md_T110404038	NonProperStrand	58	chr5	110408534	110408624	LINE	L1Md_T	L1	chr5L1Md_T110408455	NonProperStrand	12	1	-15.3738
chr8	13545841	13545941	LINE	L1_Mur3	L1	chr8L1_Mur313545247	NonProperStrand	1	chr5	27195377	27195468	protein_coding	Dpp6	intron	ENSMUSG00000061576	ProperStrand	96	1	-inf
chr11	109011789	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	2	-3.9627
chr5	30060666	30060756	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	25	chr14	33967708	33967825	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	2	-inf
chr5	146261142	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	128076486	128076533	protein_coding	Ikzf4	intron	ENSMUSG00000002578	NonProperStrand	38	1	-5.9575
chr6	119964380	119964434	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	chr5	27287295	27287339	protein_coding	Dpp6	intron	ENSMUSG00000061576	ProperStrand	96	1	-10.8557
chr2	71805499	71805574	LTR	RLTR11B	ERVK	chr2RLTR11B71805503	NonProperStrand	3	chr2	34863827	34863892	protein_coding	Hc	intron	ENSMUSG00000026874	ProperStrand	22	1	-21.7474
chr7	103550693	103550887	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	60	chr14	33967406	33967948	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	12	-21.2515
chr5	86021943	86022001	LINE	L1_Mus4	L1	chr5L1_Mus486021916	ProperStrand	1	chr4	3834944	3834992	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	1	-inf
chr11	90388057	90388073	protein_coding	Stxbp4	intron	ENSMUSG00000020546	NonProperStrand	3	chr1	182323818	182323902	protein_coding	Itpkb	intron	ENSMUSG00000038855	NonProperStrand	42	1	-19.2641
chr6	5757479	5767031	protein_coding	Dync1i1	intron	ENSMUSG00000029757	ProperStrand	12	chr11	4487852	4487932	protein_coding	Mtmr3	intron	ENSMUSG00000034354	ProperStrand	84	1	-14.6339
chr12	80192421	80193693	LINE	L1MDa	L1	chr12L1MDa80192813	ProperStrand	5	chr17	39847663	39847763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr2	180583504	180583594	lincRNA	Gm14344	exon	ENSMUSG00000085428	ProperStrand	7	chr2	180583624	180583724	lincRNA	Gm14339	exon	ENSMUSG00000085728	ProperStrand	6	6	-inf
chr3	96173923	96174017	LTR	RLTR6-int	ERV1	chr3RLTR6-int96168524	NonProperStrand	6	chr14	11651117	11651182	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-12.6284
chr7	109520579	109521637	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr5	118670521	118670611	protein_coding	Rnft2	intron	ENSMUSG00000032850	NonProperStrand	136	1	-8.2039
chr12	66371192	66371282	LTR	MTEa-int	MaLR	chr12MTEa-int66371169	NonProperStrand	1	chr12	66370919	66371019	LTR	ORR1B2	MaLR	chr12ORR1B266370823	ProperStrand	1	1	-inf
chr12	23270915	23271015	LTR	MTD-int	MaLR	chr12MTD-int23270577	NonProperStrand	1	chr9	123461905	123461996	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39847659	39847713	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	5663522	5663586	SINE	B1_Mus1	Alu	chr2B1_Mus15663489	NonProperStrand	1	1	-inf
chr3	26321224	26321240	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	22	chr8	123431910	123432048	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-8.9499
chr17	39845847	39846011	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr2	79292499	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	67	3	-5.1112
chr17	39847437	39847504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	136989993	136990050	SINE	B2_Mm2	B2	chr4B2_Mm2136989886	ProperStrand	1	1	-inf
chr10	59761897	59764495	protein_coding	Psap	utr3	ENSMUSG00000004207	ProperStrand	8	chr9	123462101	123462178	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-8.1879
chr11	50103454	50103518	protein_coding	Maml1	intron	ENSMUSG00000050567	NonProperStrand	2	chr3	96785057	96785949	protein_coding	Gja5	intron	ENSMUSG00000057123	ProperStrand	33	1	-20.7426
chr5	111360856	111360964	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	chr4	151120884	151120926	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	1	-7.0752
chr1	118541154	118541254	LINE	Lx9	L1	chr1Lx9118540918	NonProperStrand	1	chr14	122405566	122405656	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-inf
chr11	109012019	109012047	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr4	116310893	116310911	protein_coding	Akr1a1	intron	ENSMUSG00000028692	ProperStrand	14	1	-15.2312
chr3	41590358	41590455	LINE	L1Md_F2	L1	chr3L1Md_F241590299	ProperStrand	7	chr14	19278154	19278201	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	76	1	-15.9907
chr6	3201470	3201533	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr7	113340211	113340245	protein_coding	Gvin1	intron	ENSMUSG00000045868	ProperStrand	5	1	-7.8442
chr5	149213908	149213998	SINE	B1_Mus1	Alu	chr5B1_Mus1149213885	ProperStrand	3	chr5	149214024	149214124	SINE	B3	B2	chr5B3149214047	NonProperStrand	7	3	-inf
chr17	39846660	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	100421389	100421453	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int100416898	ProperStrand	6	2	-5.1926
chr7	23458447	23458465	LINE	L1Md_F2	L1	chr7L1Md_F223456573	ProperStrand	1	chr15	99816581	99816704	protein_coding	Larp4	intron	ENSMUSG00000023025	NonProperStrand	78	1	-inf
chr13	44869574	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr19	46912886	46912928	protein_coding	Cnnm2	intron	ENSMUSG00000064105	NonProperStrand	37	1	-5.4298
chr11	101259173	101259263	SINE	B3	B2	chr11B3101259102	NonProperStrand	1	chr2	127819866	127819914	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	1	-inf
chr1	178330777	178330810	LTR	MER21B	ERV1	chr1MER21B178330411	NonProperStrand	14	chr5	122354447	122360026	protein_coding	Cux2	intron	ENSMUSG00000042589	NonProperStrand	133	1	-13.3885
chr10	117125804	117125885	SINE	B2_Mm2	B2	chr10B2_Mm2117125731	NonProperStrand	1	chr10	117127769	117127792	protein_coding	Mdm2	exon	ENSMUSG00000020184	ProperStrand	19	1	-inf
chr2	22744853	22744888	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr4	54967431	54967486	protein_coding	Zfp462	intron	ENSMUSG00000060206	ProperStrand	174	1	-4.7284
chr7	34162370	34162410	LTR	MurERV4-int	ERVK	chr7MurERV4-int34162166	NonProperStrand	1	chr7	34162827	34162893	LTR	MurERV4-int	ERVK	chr7MurERV4-int34162510	NonProperStrand	1	1	-inf
chr8	71966159	71967913	LINE	Lx5	L1	chr8Lx571965457	NonProperStrand	1	chr5	136475480	136475602	protein_coding	Dtx2	intron	ENSMUSG00000004947	NonProperStrand	47	1	-inf
chr1	63582141	63582203	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chr2	119776786	119776858	protein_coding	Mga	intron	ENSMUSG00000033943	NonProperStrand	66	2	-12.5756
chr3	135238042	135238070	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n135238010	ProperStrand	1	chr9	107608969	107608986	protein_coding	Sema3f	intron	ENSMUSG00000034684	NonProperStrand	15	1	-inf
chr14	25828299	25828315	LINE	Lx2B	L1	chr14Lx2B25828131	ProperStrand	1	chr17	39847658	39847735	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	3201473	3201509	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr12	84417291	84417393	protein_coding	Dpf3	intron	ENSMUSG00000021221	NonProperStrand	34	1	-3.9380
chr1	64732215	64737137	antisense	2810408I11Rik	.	ENSMUSG00000087213	ProperStrand	99	chr1	64737161	64737332	protein_coding	Ccnyl1	utr5	ENSMUSG00000070871	NonProperStrand	20	4	-21.3469
chr12	24883983	24884077	LINE	L1Md_F3	L1	chr12L1Md_F324878191	NonProperStrand	11	chr17	39847560	39847616	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-3.4077
chr17	54323770	54323870	LINE	Lx2B	L1	chr17Lx2B54323767	ProperStrand	1	chr17	54323648	54323738	LINE	Lx9	L1	chr17Lx954323471	ProperStrand	1	1	-inf
chr17	16703439	16703539	LINE	L1_Mus4	L1	chr17L1_Mus416703251	ProperStrand	1	chr17	16703658	16703748	LINE	L1_Mus4	L1	chr17L1_Mus416703572	NonProperStrand	1	1	-inf
chr2	146474365	146474425	LINE	Lx4A	L1	chr2Lx4A146473883	NonProperStrand	2	chr2	146475685	146475749	SINE	B3A	B2	chr2B3A146475655	ProperStrand	1	1	-inf
chr11	33157036	33159938	protein_coding	Ranbp17	intron	ENSMUSG00000040594	NonProperStrand	13	chr8	122487146	122487476	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-9.3009
chr18	63078741	63078758	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr13	44869576	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.7785
chr17	39847956	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	68139531	68139558	SINE	MIR	MIR	chr15MIR68139491	ProperStrand	1	1	-inf
chr12	82451190	82451280	LINE	L1_Mus1	L1	chr12L1_Mus182448290	NonProperStrand	1	chr17	39847136	39847236	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39848633	39848717	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr12	24888424	24888496	LTR	IAPLTR3-int	ERVK	chr12IAPLTR3-int24888366	ProperStrand	3	1	-7.6307
chr16	23110428	23110473	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr2	25540059	25540168	protein_coding	Lcn10	intron	ENSMUSG00000047356	NonProperStrand	4	1	-15.6041
chr19	53393282	53393381	protein_coding	Mxi1	intron	ENSMUSG00000025025	ProperStrand	4	chr15	77051826	77051852	protein_coding	Rbfox2	intron	ENSMUSG00000033565	ProperStrand	145	1	-15.9400
chr8	68814308	68819364	protein_coding	March1	intron	ENSMUSG00000036469	ProperStrand	80	chr8	127579217	127579236	protein_coding	Disc1	intron	ENSMUSG00000043051	ProperStrand	29	1	-12.9144
chr5	146261286	146261303	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr2	154469492	154469542	protein_coding	Zfp341	intron	ENSMUSG00000059842	ProperStrand	110	1	-6.6730
chr15	10592202	10592329	protein_coding	Rai14	intron	ENSMUSG00000022246	ProperStrand	160	chr17	5327396	5327412	protein_coding	Arid1b	exon	ENSMUSG00000069729	ProperStrand	340	1	-6.6001
chr17	39848482	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	144743696	144743713	protein_coding	Rsph10b2	intron	ENSMUSG00000075569	NonProperStrand	1	1	-inf
chr6	49236543	49236606	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr15	96418843	96418910	protein_coding	Slc38a1	intron	ENSMUSG00000023169	ProperStrand	51	1	-9.6560
chr9	108309449	108309481	protein_coding	Ccdc36	intron	ENSMUSG00000047220	NonProperStrand	33	chr19	27778369	27778432	snoRNA	ENSMUSG00000088266_SNORA48	.	ENSMUSG00000088266	ProperStrand	1	1	-inf
chr17	39847845	39847879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	106115327	106115412	protein_coding	Ftsj3	intron	ENSMUSG00000020706	NonProperStrand	2	1	-5.4040
chr16	52204510	52204527	protein_coding	Cblb	intron	ENSMUSG00000022637	ProperStrand	94	chr19	59338818	59338845	protein_coding	Slc18a2	intron	ENSMUSG00000025094	NonProperStrand	24	1	-12.9765
chr5	33163309	33163399	protein_coding	C330019G07Rik	exon	ENSMUSG00000054280	NonProperStrand	2	chr5	33163745	33163845	protein_coding	RP23-118L1.1	intron	ENSMUSG00000093574	NonProperStrand	1	1	-inf
chr9	9566626	9566646	LINE	L2	L2	chr9L29566257	ProperStrand	1	chr7	35055767	35055870	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	ProperStrand	102	1	-inf
chrX	36731016	36731106	LINE	L1Md_F3	L1	chrXL1Md_F336730787	ProperStrand	1	chrX	36728670	36728770	LINE	L1Md_F	L1	chrXL1Md_F36725366	NonProperStrand	1	1	-inf
chr2	71349430	71349475	protein_coding-noncoding	Metap1d	utr5	ENSMUSG00000041921	ProperStrand	22	chr5	121670753	121670788	protein_coding	Gm15800	intron	ENSMUSG00000042744	ProperStrand	172	1	-11.9422
chr2	119471117	119471189	protein_coding	Nusap1	intron	ENSMUSG00000027306	NonProperStrand	22	chr15	96136337	96136397	protein_coding	Arid2	intron	ENSMUSG00000033237	ProperStrand	28	1	-15.6118
chr17	39848486	39848597	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chrY	2116181	2116197	SINE	B4	B4	chrYB42116101	NonProperStrand	1	1	-inf
chr17	70961909	70962009	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr3	40702765	40702855	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	NonProperStrand	16	1	-11.1232
chr17	18707697	18707787	LTR	ETnERV2-int	ERVK	chr17ETnERV2-int18703629	ProperStrand	1	chr17	18707833	18707934	LTR	RLTR13D6	ERVK	chr17RLTR13D618707785	ProperStrand	1	1	-inf
chr5	138282018	138282688	LINE	L1Md_F2	L1	chr5L1Md_F2138279089	ProperStrand	14	chr5	138283066	138289209	LINE	L1Md_F2	L1	chr5L1Md_F2138284543	ProperStrand	3	3	-inf
chr17	39843453	39843553	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	95643158	95643248	protein_coding	Ces1c	intron	ENSMUSG00000057400	NonProperStrand	28	1	-3.9511
chr1	98090834	98090924	LINE	Lx	L1	chr1Lx98087859	NonProperStrand	3	chr17	39846750	39846802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-8.0300
chr8	78181700	78181781	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	chr12	100608507	100608534	protein_coding	Foxn3	intron	ENSMUSG00000033713	ProperStrand	136	1	-6.3091
chr7	124834648	124834748	DNA	MER20B	MER1_type	chr7MER20B124834577	ProperStrand	1	chr7	124834402	124834492	SINE	B4A	B4	chr7B4A124834428	NonProperStrand	1	1	-inf
chr1	63583796	63583904	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chr3	96560509	96560554	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	1	-7.5369
chr14	54393969	54394036	LINE	L1MA5A	L1	chr14L1MA5A54393764	ProperStrand	3	chr14	54394973	54395030	SINE	RSINE1	B4	chr14RSINE154394901	ProperStrand	1	1	-inf
chr2	143467024	143467124	protein_coding	Pcsk2	intron	ENSMUSG00000027419	ProperStrand	9	chr2	139556929	139557019	protein_coding	Ism1	intron	ENSMUSG00000074766	NonProperStrand	3	1	-21.0885
chr17	39848162	39848197	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	127458163	127458204	protein_coding	Egln1	intron	ENSMUSG00000031987	NonProperStrand	13	1	-4.1930
chr17	39848471	39848702	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	114851973	114852045	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	6	-3.4622
chr17	85168825	85168915	protein_coding-noncoding	Lrpprc	utr3	ENSMUSG00000024120	NonProperStrand	8	chr17	85168944	85169044	protein_coding	Lrpprc	exon	ENSMUSG00000024120	NonProperStrand	54	4	-19.9269
chr17	39847611	39847716	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	125850481	125850498	SINE	B3	B2	chr7B3125850470	ProperStrand	1	1	-inf
chr6	38558215	38558274	protein_coding	Luc7l2	exon	ENSMUSG00000029823	ProperStrand	46	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.0046
chr2	152307465	152307485	LINE	L1M2	L1	chr2L1M2152307301	NonProperStrand	1	chr16	23112196	23112270	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	1	-inf
chr4	70271768	70271794	LINE	Lx5	L1	chr4Lx570270582	NonProperStrand	1	chr3	86138017	86138091	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	1	-inf
chr4	48442492	48442534	protein_coding	Invs	exon	ENSMUSG00000028344	NonProperStrand	29	chr5	114852004	114852028	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-10.7712
chr13	114119989	114120083	protein_coding	BC067074	intron	ENSMUSG00000021763	ProperStrand	92	chr1	160568441	160568493	protein_coding	Astn1	intron	ENSMUSG00000026587	NonProperStrand	77	1	-10.6616
chr9	123461931	123462005	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr7	27987732	27987801	protein_coding	BC024978	intron	ENSMUSG00000078786	NonProperStrand	8	1	-4.8360
chr6	30274535	30274625	lincRNA	1700095J07Rik	intron	ENSMUSG00000084861	NonProperStrand	16	chr1	59698374	59698422	protein_coding	Sumo1	intron	ENSMUSG00000026021	NonProperStrand	65	1	-14.5594
chr14	20164520	20164620	LTR	ORR1E	MaLR	chr14ORR1E20164524	NonProperStrand	1	chr14	20164748	20164838	LTR	ORR1E	MaLR	chr14ORR1E20164752	NonProperStrand	1	1	-inf
chr14	65095118	65095238	LINE	L1Md_F2	L1	chr14L1Md_F265094570	NonProperStrand	4	chr4	151113004	151113026	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	2	-inf
chr11	69698705	69698795	protein_coding-noncoding	Acap1	utr3	ENSMUSG00000001588	NonProperStrand	1	chr11	69699060	69699160	protein_coding	Acap1	intron	ENSMUSG00000001588	NonProperStrand	2	1	-inf
chr7	27208420	27208530	LINE	L1_Mm	L1	chr7L1_Mm27208147	NonProperStrand	1	chr17	39847340	39847373	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr12	27283557	27283657	Low_complexity	C-rich	Low_complexity	chr12C-rich27283465	NonProperStrand	1	chr7	70541912	70542002	lincRNA	4930554H23Rik	intron	ENSMUSG00000087315	ProperStrand	2	1	-inf
chr15	23375846	23375936	protein_coding-noncoding	Cdh18	utr5	ENSMUSG00000040420	ProperStrand	1	chr15	23376174	23376274	protein_coding	Cdh18	intron	ENSMUSG00000040420	ProperStrand	25	1	-inf
chr17	39848122	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	37935820	37935841	protein_coding	Dlc1	intron	ENSMUSG00000031523	NonProperStrand	9	1	-4.9272
chr18	34817553	34817653	LTR	ORR1D1	MaLR	chr18ORR1D134817536	ProperStrand	1	chr3	58592062	58592153	lincRNA	4930593A02Rik	intron	ENSMUSG00000087019	NonProperStrand	12	1	-inf
chr4	141653353	141653453	SINE	B2_Mm2	B2	chr4B2_Mm2141653329	NonProperStrand	1	chr4	141653054	141653144	SINE	MIR	MIR	chr4MIR141653011	ProperStrand	1	1	-inf
chr7	141448814	141448898	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	134	chr13	97190589	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.5984
chr17	39845289	39845361	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	81090184	81090246	protein_coding	St8sia2	intron	ENSMUSG00000025789	NonProperStrand	37	1	-3.0841
chr19	30147839	30147884	protein_coding	Uhrf2	intron	ENSMUSG00000024817	NonProperStrand	92	chr7	109521292	109521326	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-8.9841
chr10	45247176	45247194	LINE	Lx6	L1	chr10Lx645246967	NonProperStrand	1	chr8	105008043	105008140	LINE	Lx3C	L1	chr8Lx3C105007924	ProperStrand	1	1	-inf
chr17	39847799	39847842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	89168399	89168432	SINE	B1_Mus2	Alu	chr15B1_Mus289168348	NonProperStrand	1	1	-inf
chr12	59009678	59009773	LINE	L1MC1	L1	chr12L1MC159008962	ProperStrand	1	chr17	39848099	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-inf
chr14	31810745	31810840	LTR	ORR1B1	MaLR	chr14ORR1B131810653	ProperStrand	3	chr14	31813698	31813755	protein_coding	Spcs1	exon	ENSMUSG00000021917	ProperStrand	3	1	-20.2168
chr11	87426780	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	chr12	54696780	54696881	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	12	-20.9706
chr17	39847012	39847038	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	55021941	55022125	protein_coding	Slc7a7	intron	ENSMUSG00000000958	NonProperStrand	5	1	-3.1907
chr17	39847249	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	21447773	21447887	SINE	B2_Mm1t	B2	chr14B2_Mm1t21447723	NonProperStrand	1	1	-inf
chr17	39847224	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	111238123	111238233	protein_coding	Trank1	intron	ENSMUSG00000062296	NonProperStrand	18	2	-3.5608
chr3	105768236	105768311	protein_coding-noncoding	Wdr77	utr5	ENSMUSG00000000561	NonProperStrand	1	chr3	105767506	105767552	protein_coding	Wdr77	intron	ENSMUSG00000000561	NonProperStrand	7	1	-inf
chr12	104706579	104706651	LINE	L1Md_F2	L1	chr12L1Md_F2104706438	ProperStrand	1	chr12	104708795	104708857	LINE	L1Md_F2	L1	chr12L1Md_F2104708281	ProperStrand	1	1	-inf
chr10	62640560	62640622	protein_coding	Mypn	intron	ENSMUSG00000020067	ProperStrand	87	chr13	97190568	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.4078
chr10	62108924	62108997	protein_coding	Ddx50	intron	ENSMUSG00000020076	ProperStrand	9	chr9	123461923	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr4	151958673	151958773	Simple_repeat	(TG)n	Simple_repeat	chr4(TG)n151958582	ProperStrand	2	chr5	115489457	115489547	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-16.6631
chr7	13029072	13029172	SINE	RSINE1	B4	chr7RSINE113029041	ProperStrand	3	chr6	32460459	32460549	protein_coding	Plxna4	intron	ENSMUSG00000029765	ProperStrand	8	2	-21.0103
chr4	101543482	101543568	LTR	RLTR4_MM-int	ERV1	chr4RLTR4_MM-int101536458	NonProperStrand	13	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-9.0545
chr17	39845917	39845984	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr12	20810310	20810387	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n20810326	NonProperStrand	1	1	-inf
chrX	102352698	102352732	LINE	Lx8	L1	chrXLx8102352361	NonProperStrand	1	chrX	102343542	102343566	SINE	B3A	B2	chrXB3A102343481	NonProperStrand	2	1	-inf
chr4	54945683	54945830	LTR	MTD	MaLR	chr4MTD54945654	NonProperStrand	3	chr4	54945836	54945962	SINE	B3	B2	chr4B354945824	ProperStrand	3	3	-inf
chr2	22744835	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr2	5379258	5590563	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	11	-13.0586
chr2	161123825	161123844	LTR	MER21B	ERV1	chr2MER21B161123531	NonProperStrand	5	chr16	22418598	22418722	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	1	-14.2516
chr17	71323137	71323237	lincRNA	Gm16724	intron	ENSMUSG00000085916	NonProperStrand	31	chr17	71323371	71323461	protein_coding	Myl12b	utr3	ENSMUSG00000034868	ProperStrand	1	1	-inf
chr19	14524523	14524617	protein_coding	Tle4	intron	ENSMUSG00000024642	ProperStrand	76	chr2	60096262	60096298	protein_coding	Cd302	intron	ENSMUSG00000060703	ProperStrand	10	1	-15.2175
chr17	39847161	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	50920581	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	4	-3.0249
chr15	99862615	99862715	LTR	RLTR19-int	ERVK	chr15RLTR19-int99862617	ProperStrand	2	chr9	68766630	68766720	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	202	2	-inf
chr17	39847026	39847046	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	143129843	143129860	protein_coding	Gm13040	exon	ENSMUSG00000070616	ProperStrand	1	1	-inf
chr2	130277696	130277766	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	chr10	63320778	63320843	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-9.3359
chr17	56613941	56614000	protein_coding	Ptprs	intron	ENSMUSG00000013236	NonProperStrand	164	chr10	78042954	78043040	protein_coding	Ilvbl	intron	ENSMUSG00000032763	NonProperStrand	41	1	-10.7725
chr17	39847341	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	29351557	29351633	protein_coding	Pak4	intron	ENSMUSG00000030602	NonProperStrand	1	1	-inf
chr19	61174756	61174817	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	16	chr9	123461956	123462086	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr17	28328836	28329007	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	108	chr10	42184140	42184240	protein_coding	Lace1	intron	ENSMUSG00000038302	ProperStrand	56	1	-10.9804
chr12	111653130	111653168	LINE	Lx	L1	chr12Lx111653101	ProperStrand	1	chr12	111654230	111654258	SINE	B1_Mus1	Alu	chr12B1_Mus1111654183	NonProperStrand	1	1	-inf
chrX	110353354	110353444	LINE	L1Md_A	L1	chrXL1Md_A110353272	NonProperStrand	1	chrX	110353151	110353251	LINE	L1Md_T	L1	chrXL1Md_T110353002	ProperStrand	1	1	-inf
chr8	110841205	110841824	LINE	L1MD1	L1	chr8L1MD1110840769	NonProperStrand	2	chr8	110841826	110841916	LINE	L1MD1	L1	chr8L1MD1110841494	NonProperStrand	3	2	-inf
chrX	159709460	159709545	LINE	L3	CR1	chrXL3159709264	NonProperStrand	1	chr14	47683469	47684734	protein_coding	Samd4	intron	ENSMUSG00000021838	ProperStrand	53	1	-inf
chr17	63990686	63990785	LINE	L1Md_A	L1	chr17L1Md_A63990020	NonProperStrand	1	chr17	39846969	39847005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	127134000	127134078	LTR	RMER17B	ERVK	chr4RMER17B127133655	NonProperStrand	1	chr1	37502003	37502026	protein_coding	Mgat4a	intron	ENSMUSG00000026110	ProperStrand	18	1	-inf
chr14	120401154	120401270	DNA	Charlie1a	MER1_type	chr14Charlie1a120400646	NonProperStrand	6	chr15	38949720	38949737	protein_coding	Dcaf13	intron	ENSMUSG00000022300	ProperStrand	1	1	-inf
chr17	39846394	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	138788257	138788276	protein_coding	Capzb	intron	ENSMUSG00000028745	ProperStrand	4	1	-3.6552
chr6	86375303	86375370	protein_coding-noncoding	Tia1	utr5	ENSMUSG00000071337	ProperStrand	5	chr6	86375487	86375524	protein_coding	Tia1	exon	ENSMUSG00000071337	ProperStrand	14	1	-20.0849
chr15	81787795	81787895	protein_coding-noncoding	Pmm1	utr3	ENSMUSG00000022474	NonProperStrand	1	chr15	81787670	81787760	protein_coding	Pmm1	intron	ENSMUSG00000022474	NonProperStrand	2	1	-inf
chr6	103236445	103236545	LINE	L1Md_F2	L1	chr6L1Md_F2103235924	NonProperStrand	1	chr6	103236600	103236690	LTR	RMER15	ERVL	chr6RMER15103236583	ProperStrand	1	1	-inf
chr2	90395128	90395174	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr10	127310457	127310521	protein_coding	BC089597	intron	ENSMUSG00000074639	NonProperStrand	13	1	-12.8384
chr17	39846353	39846425	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	119093837	119093923	protein_coding	Slc22a14	intron	ENSMUSG00000070280	NonProperStrand	1	1	-inf
chr3	145583495	145583569	SINE	B4	B4	chr3B4145583506	ProperStrand	2	chr3	145588008	145588072	protein_coding	Bcl10	intron	ENSMUSG00000028191	ProperStrand	6	2	-inf
chr1	73430647	73430683	LINE	Lx7	L1	chr1Lx773430565	ProperStrand	1	chr9	20951426	20951547	protein_coding	Cdc37	intron	ENSMUSG00000019471	ProperStrand	31	1	-inf
chr13	9834352	9834441	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr6	7676287	7677271	LTR	RLTR1B	ERV1	chr6RLTR1B7677060	NonProperStrand	5	1	-14.2762
chr11	35803067	35803088	SINE	B3A	B2	chr11B3A35803065	NonProperStrand	1	chr10	58870662	58870770	protein_coding	Pla2g12b	intron	ENSMUSG00000009646	ProperStrand	3	1	-inf
chr1	132987334	132987388	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	chr16	35034580	35034639	protein_coding	Ptplb	intron	ENSMUSG00000035376	ProperStrand	179	2	-12.4026
chr17	39846427	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	110227570	110227633	SINE	RSINE1	B4	chr9RSINE1110227583	NonProperStrand	1	1	-inf
chr9	123461882	123461982	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr5	31089658	31090103	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	187	1	-11.3565
chr17	39847257	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr16	21927121	21927176	protein_coding	Map3k13	intron	ENSMUSG00000033618	NonProperStrand	2	1	-6.5615
chr17	39847495	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	72845159	72845211	protein_coding	Camkk1	intron	ENSMUSG00000020785	ProperStrand	3	1	-4.3512
chr10	123188012	123188088	LTR	ORR1C2	MaLR	chr10ORR1C2123188007	ProperStrand	2	chr17	39846433	39846511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr13	44749861	44749920	DNA	Charlie23a	MER1_type	chr13Charlie23a44749870	ProperStrand	1	chr13	44749332	44749422	LINE	Lx9	L1	chr13Lx944749150	ProperStrand	7	1	-inf
chr12	11241025	11241115	LINE	L1Md_T	L1	chr12L1Md_T11241031	ProperStrand	1	chr12	11241485	11241585	LINE	L1Md_T	L1	chr12L1Md_T11241366	ProperStrand	1	1	-inf
chr15	81397320	81397368	LTR	ORR1C1	MaLR	chr15ORR1C181397083	ProperStrand	3	chr15	81397761	81397816	SINE	B3A	B2	chr15B3A81397745	ProperStrand	1	1	-inf
chr6	28720888	28720971	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr13	46727658	46727699	protein_coding	Cap2	intron	ENSMUSG00000021373	NonProperStrand	63	1	-6.4365
chr2	37570995	37571013	LINE	L2a	L2	chr2L2a37570575	NonProperStrand	1	chr9	123462120	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	64810578	64810631	SINE	B2_Mm1t	B2	chr5B2_Mm1t64810494	ProperStrand	2	1	-5.3533
chr13	6561953	6578490	protein_coding	Pitrm1	intron	ENSMUSG00000021193	ProperStrand	23	chr9	123461801	123462047	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	2	-4.9293
chr5	115145776	115145878	LTR	MLT1D	MaLR	chr5MLT1D115145498	ProperStrand	8	chr5	115145876	115145973	SINE	B3	B2	chr5B3115145891	NonProperStrand	8	8	-inf
chr17	39846461	39847042	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr16	11196375	11199411	protein_coding	Rsl1d1	intron	ENSMUSG00000005846	ProperStrand	13	3	-4.6386
chr1	178228426	178228526	SINE	B4A	B4	chr1B4A178228434	NonProperStrand	3	chr1	178228332	178228422	Simple_repeat	(TG)n	Simple_repeat	chr1(TG)n178228347	ProperStrand	3	3	-inf
chr5	139420172	139420262	SINE	B4A	B4	chr5B4A139420193	ProperStrand	2	chr4	131972947	131973047	protein_coding	Phactr4	intron	ENSMUSG00000066043	ProperStrand	64	1	-19.4042
chr7	69707085	69707104	LINE	L1Md_F	L1	chr7L1Md_F69704018	ProperStrand	1	chr6	31434261	31434345	protein_coding	Mkln1	intron	ENSMUSG00000025609	ProperStrand	24	1	-inf
chr1	180108847	180108897	LTR	IAPEz-int	ERVK	chr1IAPEz-int180104577	ProperStrand	2	chr19	55834637	55834697	protein_coding	Tcf7l2	intron	ENSMUSG00000024985	ProperStrand	67	1	-19.1379
chr1	71674493	71674576	protein_coding	Fn1	intron	ENSMUSG00000026193	NonProperStrand	8	chr4	48605368	48605422	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	114	1	-14.8789
chr3	130726929	130728824	LTR	MT2A	ERVL	chr3MT2A130728698	NonProperStrand	5	chr3	130726872	130728760	SINE	B4A	B4	chr3B4A130726790	NonProperStrand	4	2	-inf
chr2	167698890	167698990	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n167698871	NonProperStrand	1	chr2	167699087	167699177	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n167699089	NonProperStrand	1	1	-inf
chr15	103242284	103242394	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	68	chr12	80171746	80171872	protein_coding	Plekhh1	intron	ENSMUSG00000060716	NonProperStrand	24	1	-13.6280
chr2	181084806	181084906	protein_coding-noncoding	Rtel1	utr5	ENSMUSG00000038685	NonProperStrand	3	chr2	181084927	181085017	protein_coding	Rtel1	intron	ENSMUSG00000038685	NonProperStrand	15	3	-inf
chr7	100629868	100629885	LINE	Lx7	L1	chr7Lx7100629435	ProperStrand	10	chr4	130539143	130539160	lincRNA	Gm12973	intron	ENSMUSG00000085804	ProperStrand	3	1	-20.3349
chr2	52372359	52372459	protein_coding	Cacnb4	intron	ENSMUSG00000017412	ProperStrand	40	chr11	62784793	62784840	protein_coding	Cdrt4	intron	ENSMUSG00000042200	NonProperStrand	5	1	-18.1368
chr15	69936076	69936166	LINE	Lx8	L1	chr15Lx869935925	NonProperStrand	1	chr15	69936288	69936388	LTR	MLT1D	MaLR	chr15MLT1D69936268	ProperStrand	1	1	-inf
chr8	15034615	15034685	LTR	RLTR11B	ERVK	chr8RLTR11B15034399	NonProperStrand	1	chr10	31223393	31223411	protein_coding	Rnf217	intron	ENSMUSG00000063760	ProperStrand	6	1	-inf
chr13	49246946	49247036	LTR	MTD	MaLR	chr13MTD49246833	ProperStrand	1	chr13	49247060	49247160	SINE	B1_Mus1	Alu	chr13B1_Mus149247042	NonProperStrand	1	1	-inf
chr19	36962748	36962789	protein_coding	Tnks2	intron	ENSMUSG00000024811	ProperStrand	16	chr3	40702957	40703024	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	31	1	-16.0668
chr13	74059553	74062260	protein_coding	Trip13	intron	ENSMUSG00000021569	ProperStrand	9	chr9	123461854	123461881	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chrX	151145900	151146000	LINE	L1Md_F	L1	chrXL1Md_F151145910	ProperStrand	1	chrX	151145812	151145902	snRNA	ENSMUSG00000064818_U6	.	ENSMUSG00000064818	ProperStrand	1	1	-inf
chr6	3201505	3201557	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	95746975	95746992	protein_coding	Ces1e	intron	ENSMUSG00000061959	NonProperStrand	4	1	-8.3508
chr11	6620317	6620374	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	14	chr2	5379248	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.4379
chr12	78350879	78351148	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr9	123461801	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	704	-inf
chr17	39846486	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	85462160	85464809	protein_coding	Egr4	exon	ENSMUSG00000071341	NonProperStrand	4	1	-3.6552
chr5	110280354	110280444	LTR	LTRIS2	ERV1	chr5LTRIS2110280308	NonProperStrand	2	chr5	110282007	110282050	LTR	RMER6A	ERVK	chr5RMER6A110281955	ProperStrand	2	2	-inf
chr5	65228113	65228213	LTR	ORR1E	MaLR	chr5ORR1E65228136	NonProperStrand	1	chr5	65227515	65227605	LTR	RLTR22_Mur	ERVK	chr5RLTR22_Mur65227214	ProperStrand	1	1	-inf
chr12	63890001	63890091	LINE	L1Md_F	L1	chr12L1Md_F63889915	NonProperStrand	1	chr12	63889841	63889941	LTR	LTRIS2	ERV1	chr12LTRIS263889359	NonProperStrand	1	1	-inf
chr4	155215393	155215483	protein_coding	Mxra8	intron	ENSMUSG00000029070	NonProperStrand	30	chr7	140968421	140969505	protein_coding	Dhx32	utr5	ENSMUSG00000030986	NonProperStrand	18	1	-15.8826
chr5	47620024	47620047	LINE	L1M2	L1	chr5L1M247619738	ProperStrand	3	chr17	39846352	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr12	111543645	111544612	LTR	RLTR10-int	ERVK	chr12RLTR10-int111544003	ProperStrand	3	chr12	111543546	111543636	LTR	RLTR10	ERVK	chr12RLTR10111543326	ProperStrand	4	2	-inf
chr5	146260993	146261043	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr5	24890289	24890329	protein_coding-noncoding	Mll3	utr3	ENSMUSG00000038056	ProperStrand	1	1	-inf
chr5	104046579	104046679	protein_coding	Slc10a6	intron	ENSMUSG00000029321	ProperStrand	5	chr8	119549557	119549647	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	121	2	-inf
chr13	43414042	43414091	SINE	B3	B2	chr13B343413981	NonProperStrand	1	chr2	24796594	24796617	SINE	B2_Mm2	B2	chr2B2_Mm224796600	NonProperStrand	1	1	-inf
chr3	55491804	55491894	protein_coding	Nbea	intron	ENSMUSG00000027799	ProperStrand	40	chr3	138625992	138626092	protein_coding	Rap1gds1	intron	ENSMUSG00000028149	ProperStrand	5	1	-18.1368
chr5	28408256	28408356	LTR	RLTR11A	ERVK	chr5RLTR11A28408279	ProperStrand	14	chr5	28394562	28394652	lincRNA	Gm16719	intron	ENSMUSG00000085535	NonProperStrand	24	7	-20.3382
chr15	79967310	79967441	protein_coding	Tab1	intron	ENSMUSG00000022414	NonProperStrand	44	chr4	53860746	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-10.0514
chr1	136591524	136591624	SINE	B1F2	Alu	chr1B1F2136591545	NonProperStrand	1	chr1	136591403	136591493	SINE	B1_Mur3	Alu	chr1B1_Mur3136591338	ProperStrand	1	1	-inf
chr17	39848538	39848599	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr4	45032182	45032276	protein_coding	Polr1e	intron	ENSMUSG00000028318	ProperStrand	5	1	-6.4438
chr5	44525022	44525112	DNA	MER2	MER2_type	chr5MER244525048	NonProperStrand	1	chr5	44524743	44524843	SINE	B3A	B2	chr5B3A44524631	NonProperStrand	1	1	-inf
chr1	36618074	36618170	lincRNA	D430040D24Rik	intron	ENSMUSG00000087589	NonProperStrand	3	chr2	31674257	31674315	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	1	-16.6604
chr6	149317272	149317372	LINE	L1_Mur2	L1	chr6L1_Mur2149317247	NonProperStrand	1	chr6	149317173	149317263	LTR	RLTR1B	ERV1	chr6RLTR1B149316893	NonProperStrand	1	1	-inf
chr1	36691586	36692216	protein_coding	Fam178b	intron	ENSMUSG00000046337	NonProperStrand	23	chr13	97190585	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.0209
chr17	47511972	47512023	protein_coding	Mrps10	exon	ENSMUSG00000034729	ProperStrand	8	chr17	47563027	47563075	protein_coding	1700001C19Rik	intron	ENSMUSG00000047150	NonProperStrand	4	1	-inf
chr8	34849666	34849733	protein_coding	Gtf2e2	intron	ENSMUSG00000031585	NonProperStrand	51	chr11	43687242	43687319	protein_coding	Adra1b	intron	ENSMUSG00000050541	NonProperStrand	63	2	-19.2015
chr17	39848242	39848290	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr8	95251575	95251613	LTR	MLT1K	MaLR	chr8MLT1K95251406	NonProperStrand	1	1	-inf
chr3	105006105	105008024	LINE	L1_Mus3	L1	chr3L1_Mus3105007678	ProperStrand	3	chr3	105008047	105011274	LTR	MTB	MaLR	chr3MTB105011011	ProperStrand	3	3	-inf
chr15	96191076	96191113	protein_coding	Arid2	intron	ENSMUSG00000033237	ProperStrand	28	chr2	31261642	31261696	protein_coding	Hmcn2	intron	ENSMUSG00000055632	ProperStrand	328	1	-10.1589
chr10	77114805	77114887	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n77114784	NonProperStrand	1	chr10	75531358	75531425	protein_coding	Slc5a4b	intron	ENSMUSG00000020226	NonProperStrand	34	1	-inf
chr17	39847277	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	53503371	53503406	protein_coding	Rab39	intron	ENSMUSG00000055069	ProperStrand	5	1	-4.3348
chr10	4354194	4354219	LINE	L1_Mus2	L1	chr10L1_Mus24353796	NonProperStrand	185	chr6	119930036	119930085	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	1	-9.5425
chr2	77191026	77191116	LTR	MTA_Mm	MaLR	chr2MTA_Mm77190997	ProperStrand	3	chr2	77188525	77190964	SINE	B3A	B2	chr2B3A77188506	NonProperStrand	3	3	-inf
chr13	4904774	4904874	LINE	L1_Mus3	L1	chr13L1_Mus34904258	ProperStrand	1	chr14	79861068	79861158	protein_coding	Wbp4	utr3	ENSMUSG00000022023	ProperStrand	22	1	-inf
chr14	105107759	105107806	LINE	L1Md_T	L1	chr14L1Md_T105104131	ProperStrand	8	chr1	195058980	195059048	protein_coding	Hsd11b1	intron	ENSMUSG00000016194	ProperStrand	5	1	-22.1864
chr17	39846432	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	64912280	64912316	Simple_repeat	(TA)n	Simple_repeat	chr18(TA)n64912259	ProperStrand	1	1	-inf
chr6	49236499	49236552	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr11	20225664	20225731	protein_coding	Slc1a4	intron	ENSMUSG00000020142	NonProperStrand	34	1	-10.4744
chr7	72677720	72677810	LTR	ERVL-B4-int	ERVL	chr7ERVL-B4-int72677496	NonProperStrand	1	chr7	72677990	72678090	LTR	RMER17B	ERVK	chr7RMER17B72677972	NonProperStrand	1	1	-inf
chr7	127893266	127893308	protein_coding	Vwa3a	intron	ENSMUSG00000030889	NonProperStrand	26	chr1	43559765	43559864	protein_coding	Nck2	intron	ENSMUSG00000066877	ProperStrand	93	1	-12.8346
chr4	132310269	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr2	71292215	71292305	protein_coding	Metap1d	intron	ENSMUSG00000041921	NonProperStrand	21	2	-18.6090
chr6	3201493	3201565	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chrX	162775732	162775814	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	1	-3.4992
chr9	119447062	119447078	protein_coding	Scn5a	intron	ENSMUSG00000032511	ProperStrand	3	chr11	22066484	22066629	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	103	2	-20.2288
chr17	39846425	39846502	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	68108371	68108429	Simple_repeat	(GA)n	Simple_repeat	chr10(GA)n68108369	NonProperStrand	1	1	-inf
chr5	67641585	67641650	Simple_repeat	(TTTC)n	Simple_repeat	chr5(TTTC)n67641589	NonProperStrand	1	chr9	123462040	123462076	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	69334802	69334870	protein_coding-noncoding	Anxa2	utr5	ENSMUSG00000032231	ProperStrand	1	chr9	69336291	69336378	protein_coding	Anxa2	intron	ENSMUSG00000032231	ProperStrand	46	1	-inf
chr17	39847827	39847850	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	91895556	91895630	lincRNA	2900072N19Rik	exon	ENSMUSG00000087018	NonProperStrand	1	1	-inf
chr17	39843450	39843487	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr17	26195034	26195103	protein_coding	Rab11fip3	intron	ENSMUSG00000037098	NonProperStrand	45	1	-3.0729
chrX	162790363	162790384	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	chr13	97190562	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.7739
chr8	33834315	33834394	LTR	ORR1A3	MaLR	chr8ORR1A333834195	NonProperStrand	1	chr9	123461874	123461920	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	100713986	100715649	SINE	B2_Mm2	B2	chrXB2_Mm2100715486	ProperStrand	1	chrX	100715679	100716298	Simple_repeat	(GAAA)n	Simple_repeat	chrX(GAAA)n100715657	ProperStrand	1	1	-inf
chr3	54803637	54803727	LTR	ORR1A2	MaLR	chr3ORR1A254803619	ProperStrand	1	chr3	54803534	54803634	Simple_repeat	(TGGG)n	Simple_repeat	chr3(TGGG)n54803491	NonProperStrand	1	1	-inf
chr2	53176378	53177414	LINE	L1Md_T	L1	chr2L1Md_T53176722	ProperStrand	4	chr2	53177412	53190037	LTR	LTR16A	ERVL	chr2LTR16A53189855	ProperStrand	4	4	-inf
chr10	62642796	62642815	protein_coding	Mypn	intron	ENSMUSG00000020067	ProperStrand	87	chr6	119948049	119948145	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	1	-11.0532
chr11	79272585	79272611	protein_coding	Nf1	intron	ENSMUSG00000020716	ProperStrand	21	chr16	22138824	22138946	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	170	1	-12.0603
chr6	3201509	3201567	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	60247330	60247398	protein_coding	Shisa2	intron	ENSMUSG00000044461	NonProperStrand	3	1	-9.0398
chr9	110226791	110226833	SINE	B3	B2	chr9B3110226768	NonProperStrand	3	chr16	4208740	4208827	protein_coding	Crebbp	intron	ENSMUSG00000022521	ProperStrand	81	1	-17.6791
chr17	39847561	39847601	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	112350050	112350080	SINE	RSINE1	B4	chr5RSINE1112350011	NonProperStrand	1	1	-inf
chr10	101141083	101141173	LINE	L1Md_F2	L1	chr10L1Md_F2101140641	NonProperStrand	1	chr10	101712651	101712751	protein_coding	Mgat4c	intron	ENSMUSG00000019888	ProperStrand	16	1	-inf
chr3	96360074	96360116	lincRNA	Gm15441	intron	ENSMUSG00000074398	ProperStrand	1	chr5	20835578	20835629	protein_coding	Ccdc146	intron	ENSMUSG00000064280	ProperStrand	82	1	-inf
chr5	30460531	30460621	protein_coding-noncoding	Hadha	utr3	ENSMUSG00000025745	NonProperStrand	7	chr5	30460670	30460770	protein_coding	Hadha	intron	ENSMUSG00000025745	NonProperStrand	7	7	-inf
chr10	85812665	85812755	protein_coding-noncoding	Syn3	utr3	ENSMUSG00000059602	NonProperStrand	2	chr10	82617708	82617808	protein_coding	Chst11	intron	ENSMUSG00000034612	NonProperStrand	9	2	-inf
chr4	116382995	116383085	protein_coding-noncoding	Ccdc163	utr5	ENSMUSG00000028689	NonProperStrand	2	chr4	116383180	116383280	protein_coding	Ccdc163	intron	ENSMUSG00000028689	NonProperStrand	7	2	-inf
chr17	39844654	39844744	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr2	161006129	161006228	lincRNA	Gm14243	intron	ENSMUSG00000067745	NonProperStrand	16	1	-5.0517
chr17	35509985	35510063	LTR	IAPEz-int	ERVK	chr17IAPEz-int35504632	ProperStrand	122	chr7	126795442	126795510	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-7.3574
chr2	29981750	29981797	LTR	RMER15	ERVL	chr2RMER1529981468	ProperStrand	1	chr2	29980607	29980694	SINE	B3A	B2	chr2B3A29980556	NonProperStrand	1	1	-inf
chr7	102441908	102441989	LINE	Lx4A	L1	chr7Lx4A102441216	NonProperStrand	4	chr17	39846775	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr16	20533616	20533687	LINE	L2	L2	chr16L220533535	ProperStrand	1	chr13	112578189	112578277	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr9	31175484	31175584	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	152	chr17	3190178	3190268	protein_coding	Scaf8	exon	ENSMUSG00000046201	ProperStrand	73	1	-9.7630
chr8	84207982	84208072	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	chr6	125026473	125026573	protein_coding	Lpar5	intron	ENSMUSG00000067714	ProperStrand	6	2	-18.1993
chr13	63510350	63510432	protein_coding	Fancc	intron	ENSMUSG00000021461	ProperStrand	182	chr17	47920914	47920965	protein_coding	Tfeb	intron	ENSMUSG00000023990	NonProperStrand	85	1	-9.0981
chr8	111997231	111997331	SINE	B4	B4	chr8B4111997047	NonProperStrand	1	chr8	111997329	111997419	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n111997305	NonProperStrand	1	1	-inf
chr4	151975998	151976088	DNA	URR1B	MER1_type	chr4URR1B151976022	ProperStrand	1	chr4	151976107	151976207	LINE	Lx8	L1	chr4Lx8151976126	ProperStrand	1	1	-inf
chr19	44396613	44396703	LTR	ETnERV2-int	ERVK	chr19ETnERV2-int44396572	NonProperStrand	1	chr19	44396499	44396599	LTR	RLTR9D	ERVK	chr19RLTR9D44396385	NonProperStrand	1	1	-inf
chr11	109011806	109011874	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	15316624	15316705	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-4.5827
chr19	9874317	9874358	LINE	Lx2A1	L1	chr19Lx2A19871633	NonProperStrand	14	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-8.9012
chr2	77616403	77616422	protein_coding	Zfp385b	intron	ENSMUSG00000027016	NonProperStrand	10	chr3	105966849	105966935	protein_coding	Chi3l3	intron	ENSMUSG00000040809	NonProperStrand	47	1	-16.1861
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr7	112835353	112835452	protein_coding	Dnhd1	intron	ENSMUSG00000030882	ProperStrand	238	1	-7.8427
chr7	135020230	135020320	protein_coding	Zfp668	utr5	ENSMUSG00000049728	NonProperStrand	18	chr7	135020403	135020503	protein_coding	Zfp646	utr5	ENSMUSG00000049739	ProperStrand	5	1	-19.9608
chr7	100453874	100453974	LINE	L1_Mur2	L1	chr7L1_Mur2100453538	NonProperStrand	1	chr7	100454227	100454317	LINE	Lx	L1	chr7Lx100454250	ProperStrand	1	1	-inf
chr1	123750381	123750471	LTR	MTE2b	MaLR	chr1MTE2b123750387	ProperStrand	1	chr1	123750198	123750298	Low_complexity	GA-rich	Low_complexity	chr1GA-rich123750122	NonProperStrand	1	1	-inf
chr2	30378181	30378244	LTR	MTEa	MaLR	chr2MTEa30378186	NonProperStrand	3	chr2	30377973	30378182	SINE	B1F	Alu	chr2B1F30377953	NonProperStrand	2	2	-inf
chr11	109011810	109011861	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr1	39932631	39932691	LTR	RMER12	ERVK	chr1RMER1239932638	NonProperStrand	2	1	-13.5345
chr5	143708407	143708497	SINE	B4A	B4	chr5B4A143708295	NonProperStrand	2	chr5	143708512	143708612	SINE	PB1D10	Alu	chr5PB1D10143708506	NonProperStrand	1	1	-inf
chr14	31016214	31016235	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr2	120544488	120544568	protein_coding	Cdan1	utr3	ENSMUSG00000027284	ProperStrand	17	1	-11.6743
chr7	130614051	130614124	LINE	Lx7	L1	chr7Lx7130612152	ProperStrand	1	chr9	123461851	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	109983603	109983698	protein_coding	Mtap4	intron	ENSMUSG00000032479	ProperStrand	91	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-5.1572
chr5	10426141	10426160	DNA	MER20	MER1_type	chr5MER2010425966	ProperStrand	1	chr10	40258541	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	1	-inf
chr14	51214343	51214433	LINE	L1VL1	L1	chr14L1VL151214257	ProperStrand	1	chr8	3946408	3946508	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	1	-inf
chr18	34313751	34313793	SINE	B3A	B2	chr18B3A34313734	NonProperStrand	1	chr19	45762841	45762929	SINE	B2_Mm1t	B2	chr19B2_Mm1t45762791	ProperStrand	1	1	-inf
chr6	125487710	125487757	LTR	LTR90B	LTR	chr6LTR90B125487657	NonProperStrand	1	chr3	89405573	89405673	protein_coding	Kcnn3	intron	ENSMUSG00000000794	ProperStrand	88	1	-inf
chr9	123462079	123462132	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	120669257	120669352	protein_coding	Ttbk2	intron	ENSMUSG00000090100	NonProperStrand	17	1	-3.3592
chr17	17338602	17338664	LINE	Lx2B	L1	chr17Lx2B17338511	NonProperStrand	1	chr17	17340343	17340423	Unknown	MurSatRep1	Unknown	chr17MurSatRep117339148	ProperStrand	1	1	-inf
chr5	146261170	146261221	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	12011950	12012004	protein_coding	Patl1	intron	ENSMUSG00000046139	ProperStrand	11	1	-8.4703
chr19	24126149	24126189	SINE	B1_Mur1	Alu	chr19B1_Mur124126132	ProperStrand	2	chr2	90395137	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	2	-inf
chr11	73049383	73049435	protein_coding	Trpv1	intron	ENSMUSG00000005952	ProperStrand	10	chr6	128002251	128002316	protein_coding	Tspan9	intron	ENSMUSG00000030352	ProperStrand	182	1	-13.4613
chr11	54734742	54734821	protein_coding	Tnip1	intron	ENSMUSG00000020400	ProperStrand	67	chr14	65541774	65541843	protein_coding	Hmbox1	intron	ENSMUSG00000021972	ProperStrand	77	1	-11.2988
chr8	78040091	78040148	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	464	chr10	88675522	88675539	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	37	1	-8.9028
chr1	161038114	161038159	LINE	L1MEc	L1	chr1L1MEc161037911	ProperStrand	9	chr9	123461960	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr4	38189805	38189895	LINE	L1Md_A	L1	chr4L1Md_A38188952	ProperStrand	1	chr4	38190086	38190186	LINE	L1_Mm	L1	chr4L1_Mm38189947	ProperStrand	1	1	-inf
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	5521167	5521923	protein_coding	Ankrd36	intron	ENSMUSG00000020481	ProperStrand	4	1	-3.6552
chr17	39846941	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	29331041	29331110	protein_coding	Nccrp1	intron	ENSMUSG00000047586	ProperStrand	1	1	-inf
chr19	18363628	18363718	LINE	L1Md_T	L1	chr19L1Md_T18360616	NonProperStrand	1	chr8	13417087	13417187	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	16	1	-inf
chr9	123462082	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chrX	75434213	75434244	protein_coding	Obp1b	intron	ENSMUSG00000067679	ProperStrand	1	1	-inf
chr3	104869506	104869606	LTR	MTEa-int	MaLR	chr3MTEa-int104869274	ProperStrand	1	chr3	104869739	104869829	protein_coding	4930564D02Rik	utr5	ENSMUSG00000051788	NonProperStrand	1	1	-inf
chr17	39847551	39847579	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	mmu-miR-714	2	20	miRNA	mmu-miR-714	.	mmu-miR-714	ProperStrand	5	1	-3.2379
chr9	20942956	20942998	SINE	ID_B1	B4	chr9ID_B120942898	ProperStrand	1	chr11	65115464	65115496	lincRNA	Gm12295	intron	ENSMUSG00000085162	ProperStrand	128	1	-inf
chr17	39848124	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	180257630	180257665	protein_coding	Ntsr1	intron	ENSMUSG00000027568	ProperStrand	19	1	-3.4660
chr17	39846718	39846809	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	75116951	75116997	lincRNA	Gm15984	intron	ENSMUSG00000085657	ProperStrand	1	1	-inf
chr8	17216503	17216593	protein_coding-noncoding	Csmd1	utr3	ENSMUSG00000060924	NonProperStrand	1	chr8	17217061	17217161	protein_coding	Csmd1	intron	ENSMUSG00000060924	NonProperStrand	23	1	-inf
chr2	102829376	102829449	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr6	119968477	119968556	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	67	1	-9.6535
chr17	39847736	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	107182343	107182360	protein_coding	Chrdl2	intron	ENSMUSG00000030732	NonProperStrand	2	1	-5.4040
chr16	32974507	32974575	protein_coding	Lrch3	intron	ENSMUSG00000022801	ProperStrand	84	chr13	44869943	44870021	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.8564
chr17	39847514	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	107841430	107842136	antisense	Gm17202	.	ENSMUSG00000090558	ProperStrand	12	2	-3.1700
chr14	47401599	47405804	protein_coding	Cnih	intron	ENSMUSG00000015759	ProperStrand	19	chr11	72715651	72715698	protein_coding	Zzef1	intron	ENSMUSG00000055670	ProperStrand	78	1	-13.8285
chr18	70483442	70483542	LINE	L1Md_F2	L1	chr18L1Md_F270483093	ProperStrand	1	chr18	70483635	70483725	LTR	RLTR10	ERVK	chr18RLTR1070483545	ProperStrand	1	1	-inf
chr11	4564461	4564545	protein_coding	Ascc2	intron	ENSMUSG00000020412	NonProperStrand	40	chr6	113558016	113558061	protein_coding	6720456B07Rik	intron	ENSMUSG00000033940	ProperStrand	11	1	-16.3322
chr17	39847348	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	81895369	81895428	protein_coding	4930407I10Rik	exon	ENSMUSG00000075524	ProperStrand	3	1	-4.3512
chr13	72625582	72625636	Simple_repeat	(TAGA)n	Simple_repeat	chr13(TAGA)n72625291	NonProperStrand	1	chr17	25981540	25981604	protein_coding	Rhot2	utr5	ENSMUSG00000025733	ProperStrand	13	1	-inf
chr17	39845848	39845989	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	116541724	116541742	protein_coding-noncoding	St6galnac2	utr3	ENSMUSG00000057286	ProperStrand	22	1	-3.7612
chr6	3201453	3201510	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	4167664	4167739	protein_coding	Lif	intron	ENSMUSG00000034394	ProperStrand	7	1	-7.1107
chr8	105524673	105524722	Simple_repeat	(CATA)n	Simple_repeat	chr8(CATA)n105524639	NonProperStrand	1	chr1	136715242	136715332	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-inf
chr18	75001770	75002079	LTR	MTA_Mm	MaLR	chr18MTA_Mm75001701	ProperStrand	11	chr9	123461905	123461981	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr11	51649675	51649701	protein_coding	Phf15	intron	ENSMUSG00000020387	ProperStrand	71	chr1	37898120	37898216	protein_coding	Tsga10	utr5	ENSMUSG00000060771	NonProperStrand	14	1	-14.6524
chr17	26355961	26356061	protein_coding	Itfg3	intron	ENSMUSG00000024187	NonProperStrand	3	chr17	26337232	26337322	protein_coding	Arhgdig	exon	ENSMUSG00000073433	NonProperStrand	2	2	-inf
chr17	39848454	39848640	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	106066808	106066843	protein_coding-noncoding	Ccdc47	utr3	ENSMUSG00000078622	NonProperStrand	17	4	-13.1998
chr17	43048862	43048948	SINE	PB1D9	Alu	chr17PB1D943048830	ProperStrand	1	chr17	34935001	34935077	pseudogene	Tnxa	.	ENSMUSG00000092200	ProperStrand	49	1	-inf
chr9	99789912	99790002	LINE	Lx6	L1	chr9Lx699789458	NonProperStrand	1	chr9	99790174	99790274	LINE	Lx7	L1	chr9Lx799790191	ProperStrand	1	1	-inf
chr7	16793726	16793821	protein_coding	Dhx34	intron	ENSMUSG00000006019	NonProperStrand	71	chr5	99978873	99978904	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	119	1	-10.3087
chr19	5797307	5797397	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr11	116038450	116038550	protein_coding	Acox1	intron	ENSMUSG00000020777	NonProperStrand	71	1	-4.1195
chr3	143911022	143911112	DNA	MER3	MER1_type	chr3MER3143910915	NonProperStrand	1	chr3	143910710	143910810	LTR	MTEb	MaLR	chr3MTEb143910532	ProperStrand	1	1	-inf
chr13	65657690	65657732	LINE	L1_Mur3	L1	chr13L1_Mur365657584	ProperStrand	1	chr16	30576566	30576629	protein_coding	Lsg1	intron	ENSMUSG00000022538	ProperStrand	31	1	-inf
chr14	12188589	12188672	LINE	L1VL4	L1	chr14L1VL412187037	ProperStrand	1	chr9	123461823	123461901	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39846594	39846651	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	121132739	121132806	protein_coding-noncoding	Dtx1	utr3	ENSMUSG00000029603	ProperStrand	3	1	-4.3017
chr8	116957753	116957806	SINE	B1_Mus2	Alu	chr8B1_Mus2116957741	NonProperStrand	1	chr8	116958107	116958138	SINE	B4A	B4	chr8B4A116958078	NonProperStrand	2	1	-inf
chr7	136994876	136994975	LINE	Lx3_Mus	L1	chr7Lx3_Mus136994189	NonProperStrand	2	chr17	39847829	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr5	146261266	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr19	42031980	42032059	protein_coding	Mms19	intron	ENSMUSG00000025159	NonProperStrand	14	1	-10.8310
chrX	12801863	12801894	SINE	RSINE1	B4	chrXRSINE112801771	ProperStrand	52	chr11	106904731	106904810	protein_coding-noncoding	Bptf	utr3	ENSMUSG00000040481	ProperStrand	1	1	-inf
chr4	149493202	149493292	antisense	Gm13093	.	ENSMUSG00000087094	NonProperStrand	4	chr4	149493791	149496157	protein_coding	Slc2a5	intron	ENSMUSG00000028976	ProperStrand	11	1	-inf
chr6	125369687	125369722	SINE	B1_Mus1	Alu	chr6B1_Mus1125369685	ProperStrand	1	chr6	125368068	125368112	Simple_repeat	(GAA)n	Simple_repeat	chr6(GAA)n125368045	NonProperStrand	1	1	-inf
chr8	91005560	91005593	LINE	Lx8	L1	chr8Lx891005515	ProperStrand	1	chr8	91049131	91049220	protein_coding	Nkd1	intron	ENSMUSG00000031661	ProperStrand	33	1	-inf
chr11	96075010	96075605	SINE	RSINE1	B4	chr11RSINE196075510	ProperStrand	3	chr13	44869586	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-10.7725
chr8	109572443	109572505	protein_coding	Cog8	utr3	ENSMUSG00000031916	NonProperStrand	6	chr14	8008304	8008345	protein_coding	Gm3739	intron	ENSMUSG00000091472	NonProperStrand	23	1	-19.2656
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chrX	85631883	85631929	LTR	MT2B	ERVL	chrXMT2B85631623	ProperStrand	1	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr18	74026174	74026309	protein_coding	Mro	intron	ENSMUSG00000064036	NonProperStrand	26	1	-9.5328
chr2	29986799	29986867	LTR	LTRIS2	ERV1	chr2LTRIS229986418	NonProperStrand	1	chr5	146261117	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr15	77963847	77963891	processed_transcript	A730060N03Rik	.	ENSMUSG00000092375	NonProperStrand	58	chr7	132749994	132750079	protein_coding	Il21r	intron	ENSMUSG00000030745	NonProperStrand	38	1	-13.0141
chr18	49118106	49118196	LTR	MLT1F1-int	MaLR	chr18MLT1F1-int49117693	ProperStrand	1	chr8	34435500	34435600	protein_coding	Wrn	intron	ENSMUSG00000031583	NonProperStrand	1	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr3	88990765	88990790	protein_coding	Fam189b	intron	ENSMUSG00000032657	ProperStrand	5	1	-15.7618
chr9	19657807	19657907	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr1	20493150	20493240	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	24	1	-12.6067
chr17	74733552	74733652	LTR	RMER10B	ERVL	chr17RMER10B74733485	ProperStrand	1	chr17	74733425	74733515	LTR	RMER17C	ERVK	chr17RMER17C74733122	ProperStrand	1	1	-inf
chr8	106866254	106866288	protein_coding	Cmtm3	intron	ENSMUSG00000031875	NonProperStrand	26	chr8	106882441	106882548	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	1	-12.1468
chr7	30470646	30470696	LTR	RMER2	ERV1	chr7RMER230470660	ProperStrand	1	chr17	50420127	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-inf
chr7	127975387	127975477	SINE	B2_Mm2	B2	chr7B2_Mm2127975385	ProperStrand	1	chr7	127975608	127975708	SINE	B4	B4	chr7B4127975616	NonProperStrand	1	1	-inf
chr17	39843002	39843039	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr1	15805011	15805058	protein_coding	Terf1	intron	ENSMUSG00000025925	ProperStrand	66	1	-5.2005
chr7	127981203	127981237	SINE	B1_Mus1	Alu	chr7B1_Mus1127981208	NonProperStrand	4	chr16	94175115	94175159	protein_coding	Sim2	intron	ENSMUSG00000062713	NonProperStrand	112	1	-16.4709
chr12	59040427	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	162	chr17	8385965	8385981	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	23	1	-11.9713
chr17	39847636	39847680	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	100406378	100408146	protein_coding	Pou6f1	utr3	ENSMUSG00000009739	ProperStrand	5	1	-3.2379
chr2	167466965	167471798	protein_coding	Gm20431	intron	ENSMUSG00000089739	NonProperStrand	53	chr2	167468681	167473472	protein_coding	Tmem189	exon	ENSMUSG00000090213	NonProperStrand	16	10	-inf
chr9	113854098	113854147	protein_coding	Ubp1	intron	ENSMUSG00000009741	ProperStrand	58	chr18	34651626	34651721	protein_coding	Fam13b	intron	ENSMUSG00000036501	ProperStrand	59	1	-12.1253
chr2	11794330	11794420	LINE	Lx9	L1	chr2Lx911794310	ProperStrand	2	chr2	11794489	11794589	LTR	RMER17A	ERVK	chr2RMER17A11794504	NonProperStrand	4	2	-inf
chr9	114774528	114774618	LTR	ORR1A2	MaLR	chr9ORR1A2114774439	ProperStrand	4	chr9	114774356	114774456	SINE	B2_Mm1t	B2	chr9B2_Mm1t114774285	ProperStrand	3	3	-inf
chr14	31832369	31832438	protein_coding	Pbrm1	utr5	ENSMUSG00000042323	ProperStrand	3	chr12	109646327	109646369	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-14.1501
chr13	21914893	21914926	LTR	RMER16-int	ERVK	chr13RMER16-int21914594	ProperStrand	5	chr1	122357201	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	1	-14.0760
chr15	93307603	93307627	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	chrX	103478897	103478942	pseudogene	Gm14857	.	ENSMUSG00000081289	NonProperStrand	17	1	-14.7608
chr5	146260994	146261232	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr13	44869570	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	33	-20.4740
chr3	101582073	101582159	SINE	B1_Mur1	Alu	chr3B1_Mur1101582011	ProperStrand	6	chr3	101581796	101581838	SINE	B4A	B4	chr3B4A101581711	NonProperStrand	2	2	-inf
chr7	27525359	27525389	LINE	Lx6	L1	chr7Lx627524894	NonProperStrand	1	chr17	39847179	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr7	112689027	112689089	LINE	L1_Mus1	L1	chr7L1_Mus1112688201	ProperStrand	4	chr7	3366477	3366553	protein_coding	Cacng7	utr3	ENSMUSG00000069806	NonProperStrand	1	1	-inf
chr15	98950866	98950988	LTR	RMER17D2	ERVK	chr15RMER17D298950684	NonProperStrand	31	chr15	99034529	99037076	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	28	-inf
chr17	39848213	39848313	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	88996154	88996716	protein_coding	Plxnb2	intron	ENSMUSG00000036606	NonProperStrand	5	1	-6.1691
chr17	46722418	46722641	lincRNA	Gm16736	intron	ENSMUSG00000086673	ProperStrand	89	chr10	126988326	126988357	protein_coding	Lrp1	intron	ENSMUSG00000040249	NonProperStrand	55	1	-11.4050
chr16	38089675	38089718	protein_coding	Gsk3b	utr5	ENSMUSG00000022812	ProperStrand	96	chr13	44869579	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-3.6086
chr4	117119507	117119607	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	240	chr9	108532215	108532305	protein_coding	Arih2	intron	ENSMUSG00000064145	NonProperStrand	62	2	-14.5509
chr11	86256950	86257040	LTR	MTC	MaLR	chr11MTC86256953	ProperStrand	3	chr11	86256854	86256954	SINE	B1_Mus1	Alu	chr11B1_Mus186256818	ProperStrand	3	3	-inf
chr13	49557201	49557242	protein_coding	Ippk	utr3	ENSMUSG00000021385	NonProperStrand	66	chr10	86691002	86691119	protein_coding	1700113H08Rik	intron	ENSMUSG00000047129	NonProperStrand	35	1	-12.9195
chr4	136340524	136340564	protein_coding	Ephb2	intron	ENSMUSG00000028664	NonProperStrand	64	chr13	44869579	44869643	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.3693
chr19	35847085	35847185	LINE	L1Md_F2	L1	chr19L1Md_F235846901	ProperStrand	1	chr19	35847234	35847324	LINE	L1Md_F2	L1	chr19L1Md_F235847165	NonProperStrand	1	1	-inf
chrX	77794926	77794945	LTR	RodERV21-int	ERV1	chrXRodERV21-int77794523	NonProperStrand	1	chr12	4451137	4451251	protein_coding	Ncoa1	intron	ENSMUSG00000020647	ProperStrand	80	1	-inf
chr9	62112080	62112132	SINE	B1_Mur4	Alu	chr9B1_Mur462112027	NonProperStrand	1	chr9	62108396	62108482	SINE	ID_B1	B4	chr9ID_B162108409	NonProperStrand	1	1	-inf
chr5	144185968	144186017	LTR	MT2B	ERVL	chr5MT2B144185891	NonProperStrand	6	chr5	144185821	144185869	SINE	B4A	B4	chr5B4A144185801	ProperStrand	1	1	-inf
chr16	33280672	33284456	protein_coding	Snx4	intron	ENSMUSG00000022808	ProperStrand	21	chr16	23110480	23110536	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	10	1	-17.7681
chr19	6116048	6116115	protein_coding	Sac3d1	utr3	ENSMUSG00000024790	ProperStrand	5	chr13	44869589	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-9.5722
chr11	62370159	62370228	LINE	L1MA6	L1	chr11L1MA662370125	NonProperStrand	2	chr11	62370392	62370473	SINE	B1_Mus1	Alu	chr11B1_Mus162370327	NonProperStrand	2	2	-inf
chr3	67472453	67472553	LTR	RMER17B	ERVK	chr3RMER17B67472293	NonProperStrand	1	chr3	67467863	67467953	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n67467822	ProperStrand	2	1	-inf
chr4	104748680	104748749	protein_coding	Prkaa2	intron	ENSMUSG00000028518	NonProperStrand	20	chr5	136340162	136340222	protein_coding	Srrm3	intron	ENSMUSG00000039860	NonProperStrand	42	2	-inf
chr2	25222804	25222877	SINE	B1_Mm	Alu	chr2B1_Mm25222725	NonProperStrand	7	chr9	123461876	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr14	83688126	83688226	LINE	L1_Mus3	L1	chr14L1_Mus383686652	NonProperStrand	1	chr7	5409579	5409669	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	14	1	-inf
chr10	7617629	7617697	LTR	RLTR15	ERVK	chr10RLTR157617548	ProperStrand	1	chr17	24425184	24425200	protein_coding	Abca17	intron	ENSMUSG00000035435	ProperStrand	35	1	-inf
chr1	113915658	113915748	LINE	Lx3C	L1	chr1Lx3C113914835	ProperStrand	1	chr9	110943165	110944202	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	1	-inf
chr18	34236047	34236142	LINE	Lx8	L1	chr18Lx834235844	ProperStrand	3	chr18	34237403	34237457	LTR	RMER19B	ERVK	chr18RMER19B34236705	ProperStrand	2	1	-20.2824
chr6	122728792	122728872	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	chr14	122364423	122364480	protein_coding	Ubac2	intron	ENSMUSG00000041765	ProperStrand	117	1	-7.6755
chr3	28665686	28665703	processed_transcript	1700112D23Rik	.	ENSMUSG00000091329	ProperStrand	4	chr9	115176188	115176246	protein_coding	Stt3b	intron	ENSMUSG00000032437	NonProperStrand	44	1	-18.5642
chr14	30997485	30997585	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr14	30979940	30980030	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	1	-6.8517
chr5	146261020	146261080	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	85654093	85654136	protein_coding	Tbx2	exon	ENSMUSG00000000093	ProperStrand	8	1	-9.1415
chr13	20128472	20128575	LTR	RLTR10E	ERVK	chr13RLTR10E20128326	ProperStrand	1	chr8	83088224	83088242	LTR	MTD	MaLR	chr8MTD83088116	ProperStrand	1	1	-inf
chr15	82290843	82290899	LINE	L1_Mus2	L1	chr15L1_Mus282290053	NonProperStrand	1	chr1	93832746	93835320	protein_coding	Hdac4	intron	ENSMUSG00000026313	NonProperStrand	9	1	-inf
chr17	4082184	4082241	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr11	63978307	63978380	lincRNA	Gm12290	intron	ENSMUSG00000087622	NonProperStrand	12	2	-17.3428
chr15	98532331	98532431	Low_complexity	GA-rich	Low_complexity	chr15GA-rich98532327	NonProperStrand	1	chr15	98532483	98532573	SINE	B1_Mur1	Alu	chr15B1_Mur198532507	NonProperStrand	1	1	-inf
chr17	39846882	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	72739842	72739868	SINE	B4A	B4	chr8B4A72739603	NonProperStrand	3	1	-4.3017
chr16	32391098	32391130	protein_coding	Ubxn7	utr3	ENSMUSG00000053774	ProperStrand	53	chr4	101438577	101438658	protein_coding	Lepr	intron	ENSMUSG00000057722	ProperStrand	109	2	-17.3079
chr6	145161151	145161219	protein_coding	Lyrm5	intron	ENSMUSG00000040370	ProperStrand	1	chr12	82425255	82425313	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	115	1	-inf
chr11	87638701	87638726	protein_coding	Lpo	intron	ENSMUSG00000009356	ProperStrand	2	chr13	35870636	35870697	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	349	1	-15.9640
chr1	31566458	31566558	LTR	RMER19C	ERVK	chr1RMER19C31566479	NonProperStrand	1	chr19	24879088	24879178	protein_coding	Pgm5	intron	ENSMUSG00000041731	NonProperStrand	9	1	-inf
chr19	29075412	29075512	protein_coding	Cdc37l1	intron	ENSMUSG00000024780	ProperStrand	8	chr12	67660687	67660777	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	2	-inf
chr9	123461983	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	143517197	143527831	protein_coding	Tnrc18	exon	ENSMUSG00000039477	ProperStrand	20	1	-3.0591
chr19	5801980	5802070	lincRNA	Malat1	exon	ENSMUSG00000092341	NonProperStrand	13	chr5	140639125	140639227	protein_coding	Mad1l1	intron	ENSMUSG00000029554	ProperStrand	144	1	-13.3825
chr5	3630194	3631594	protein_coding	Pex1	exon	ENSMUSG00000005907	ProperStrand	26	chr9	118674951	118675001	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.6380
chr19	44312481	44312531	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	179	chr14	11641064	11641152	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-5.7129
chr4	95648368	95648425	protein_coding	Hook1	intron	ENSMUSG00000028572	ProperStrand	23	chr6	148354788	148354834	protein_coding	Tmtc1	intron	ENSMUSG00000030306	NonProperStrand	51	1	-14.2981
chr6	119572790	119572808	protein_coding	Erc1	intron	ENSMUSG00000030172	NonProperStrand	10	chr3	32762020	32762114	protein_coding	Usp13	intron	ENSMUSG00000056900	ProperStrand	29	1	-17.1057
chr11	114653027	114653118	protein_coding	Btbd17	exon	ENSMUSG00000000202	ProperStrand	1	chr2	25192742	25192801	protein_coding	Man1b1	intron	ENSMUSG00000036646	NonProperStrand	18	1	-inf
chr17	36844015	36844135	LTR	MuLV-int	ERV1	chr17MuLV-int36843981	NonProperStrand	1	chr13	44869632	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr16	10534121	10534221	protein_coding	Dexi	intron	ENSMUSG00000038055	NonProperStrand	2	chr16	10550025	10550115	protein_coding	Clec16a	intron	ENSMUSG00000068663	NonProperStrand	10	1	-20.4467
chr1	192745568	192745687	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr17	39847447	39847959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	7	-4.2817
chr15	85177759	85177778	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr15	84100155	84100241	protein_coding	Parvb	intron	ENSMUSG00000022438	NonProperStrand	30	1	-10.7024
chr5	33529143	33529216	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int33529161	NonProperStrand	15	chr5	33529885	33529948	LTR	RLTR10-int	ERVK	chr5RLTR10-int33529528	NonProperStrand	40	1	-15.6765
chr11	109011745	109011771	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	7277967	7277983	protein_coding	Mmp13	exon	ENSMUSG00000050578	ProperStrand	1	1	-inf
chr5	146261174	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr19	25348135	25348238	protein_coding	Kank1	intron	ENSMUSG00000032702	ProperStrand	85	1	-4.3935
chr11	60144851	60144914	protein_coding	Tom1l2	intron	ENSMUSG00000000538	NonProperStrand	192	chr5	23512782	23512877	protein_coding	Fam126a	intron	ENSMUSG00000028995	ProperStrand	48	1	-10.1389
chr8	114697983	114698029	DNA	URR1B	MER1_type	chr8URR1B114697972	ProperStrand	1	chr8	114692504	114692569	SINE	B4A	B4	chr8B4A114692506	NonProperStrand	1	1	-inf
chr11	26523964	26524012	LINE	Lx	L1	chr11Lx26523943	ProperStrand	5	chr11	26517321	26517403	LTR	MERVL_2A-int	ERVL	chr11MERVL_2A-int26515715	ProperStrand	2	1	-23.2669
chr9	50832333	50832386	SINE	B3	B2	chr9B350832322	ProperStrand	1	chr11	69669063	69669093	protein_coding	Tnk1	exon	ENSMUSG00000001583	ProperStrand	269	1	-inf
chr17	39847271	39847330	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	146600579	146600647	SINE	B3	B2	chr6B3146600493	NonProperStrand	1	1	-inf
chr1	113918226	113918301	LINE	Lx3C	L1	chr1Lx3C113916270	ProperStrand	1	chr15	64198508	64198532	protein_coding	Asap1	intron	ENSMUSG00000022377	ProperStrand	324	1	-inf
chr15	27517855	27517940	protein_coding	Ank	intron	ENSMUSG00000022265	ProperStrand	72	chr9	40803993	40804068	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-7.0766
chr4	152332943	152333033	LTR	MTA_Mm	MaLR	chr4MTA_Mm152332666	NonProperStrand	2	chr4	152333143	152333243	Simple_repeat	(TCCA)n	Simple_repeat	chr4(TCCA)n152333058	ProperStrand	6	2	-inf
chr14	55678648	55678702	antisense	RP23-171A13.8	.	ENSMUSG00000093452	ProperStrand	2	chr11	62883653	62883694	protein_coding	Tekt3	exon	ENSMUSG00000042189	ProperStrand	23	1	-20.7239
chr17	53575207	53575248	protein_coding	Efhb	intron	ENSMUSG00000023931	NonProperStrand	37	chr5	114852005	114852036	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-10.2774
chr5	147484445	147484543	LTR	RMER19C	ERVK	chr5RMER19C147483990	NonProperStrand	1	chr5	147478220	147478254	Simple_repeat	(TTAGGG)n	Simple_repeat	chr5(TTAGGG)n147478190	ProperStrand	2	1	-inf
chr15	12118067	12118168	LTR	RLTR14	ERV1	chr15RLTR1412118058	NonProperStrand	2	chr15	12117947	12118037	SINE	B2_Mm2	B2	chr15B2_Mm212117905	ProperStrand	2	2	-inf
chr8	83579508	83579569	SINE	B2_Mm2	B2	chr8B2_Mm283579394	NonProperStrand	1	chr1	136364889	136364964	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-inf
chr5	146261267	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr4	132309484	132310324	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	3	-12.9961
chr4	121203786	121203886	LINE	L1Md_F3	L1	chr4L1Md_F3121199420	ProperStrand	8	chr4	121203875	121203965	LINE	L1Md_F3	L1	chr4L1Md_F3121203806	ProperStrand	3	1	-inf
chr12	72790632	72790732	LINE	L1M2	L1	chr12L1M272790627	NonProperStrand	4	chr12	72786676	72786766	SINE	RSINE1	B4	chr12RSINE172786673	ProperStrand	3	3	-inf
chr18	75374693	75374749	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	chr11	120347305	120347657	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	1	-7.0882
chr6	120992244	120992356	protein_coding	Mical3	utr5	ENSMUSG00000003178	ProperStrand	108	chr12	109649618	109649654	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-6.6245
chr11	109011692	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr3	90017155	90017182	protein_coding	Rps27	exon	ENSMUSG00000090733	ProperStrand	3	1	-12.4363
chr11	89079334	89079424	LINE	Lx8	L1	chr11Lx889078951	NonProperStrand	1	chr11	89079575	89079675	Simple_repeat	(TCTA)n	Simple_repeat	chr11(TCTA)n89079558	ProperStrand	1	1	-inf
chr9	21566061	21566161	SINE	B1_Mus1	Alu	chr9B1_Mus121566087	NonProperStrand	1	chr9	21565940	21566030	SINE	B2_Mm2	B2	chr9B2_Mm221565941	ProperStrand	1	1	-inf
chr2	165163204	165163304	LTR	RLTR26	ERVK	chr2RLTR26165163123	ProperStrand	1	chr2	165162747	165162838	SINE	MIR	MIR	chr2MIR165162688	NonProperStrand	1	1	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr11	33160363	33342092	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	2	-3.2747
chr17	39848124	39848154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr12	82681603	82681710	protein_coding	Med6	intron	ENSMUSG00000002679	NonProperStrand	1	1	-inf
chr14	34317038	34317116	SINE	B3	B2	chr14B334316983	NonProperStrand	1	chr16	17272648	17272682	SINE	B1_Mm	Alu	chr16B1_Mm17272656	NonProperStrand	1	1	-inf
chr14	27394090	27394148	LTR	MLT-int	MaLR	chr14MLT-int27393796	ProperStrand	1	chr14	27394220	27394266	SINE	B1F1	Alu	chr14B1F127394137	NonProperStrand	1	1	-inf
chr15	77768798	77768913	LTR	RLTR40	ERVK	chr15RLTR4077768709	NonProperStrand	5	chr15	77767563	77768829	SINE	B2_Mm2	B2	chr15B2_Mm277767573	ProperStrand	3	3	-inf
chr11	76529933	76530024	SINE	B1F	Alu	chr11B1F76529916	ProperStrand	6	chr9	123462125	123462152	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.4370
chr4	104462927	104463037	protein_coding	C8b	intron	ENSMUSG00000029656	ProperStrand	18	chr7	24987569	24987981	protein_coding	Zfp111	intron	ENSMUSG00000087598	ProperStrand	11	1	-18.0444
chr13	16758685	16758785	LINE	L1MCa	L1	chr13L1MCa16758618	ProperStrand	1	chr13	16758476	16758566	LINE	Lx8	L1	chr13Lx816758244	NonProperStrand	1	1	-inf
chr17	39847181	39847221	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	64199950	64200043	SINE	B3A	B2	chr9B3A64199883	NonProperStrand	1	1	-inf
chr13	21716464	21716554	LINE	Lx7	L1	chr13Lx721715740	ProperStrand	9	chr4	145449079	145449179	LTR	MYSERV6-int	ERVK	chr4MYSERV6-int145448847	NonProperStrand	5	1	-inf
chr5	71857581	71857671	protein_coding	Cox7b2	intron	ENSMUSG00000049387	NonProperStrand	3	chr8	126245359	126245459	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	2	-20.9428
chr15	81327114	81327294	LTR	IAPEz-int	ERVK	chr15IAPEz-int81325795	NonProperStrand	2	chr15	81327316	81329093	LTR	IAPEz-int	ERVK	chr15IAPEz-int81327185	NonProperStrand	2	2	-inf
chr13	44799915	44799944	LTR	RMER17C	ERVK	chr13RMER17C44799821	NonProperStrand	1	chr2	165112173	165112191	protein_coding	Slc35c2	intron	ENSMUSG00000017664	NonProperStrand	1	1	-inf
chr11	5394755	5394844	SINE	B2_Mm1t	B2	chr11B2_Mm1t5394654	NonProperStrand	1	chr13	97190561	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	4386211	4386294	protein_coding	Mtpap	exon	ENSMUSG00000024234	ProperStrand	6	1	-3.9545
chr13	55534008	55534182	LINE	L1MA4	L1	chr13L1MA455533478	ProperStrand	2	chr13	55534212	55534302	SINE	B1_Mur4	Alu	chr13B1_Mur455534162	ProperStrand	2	1	-19.8939
chr3	69103409	69103441	LINE	L1_Mus3	L1	chr3L1_Mus369102936	NonProperStrand	3	chr3	69106669	69106766	LTR	ORR1B1-int	MaLR	chr3ORR1B1-int69106690	NonProperStrand	4	3	-inf
chr5	146261024	146261048	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	86678717	86678801	protein_coding	4930432K21Rik	intron	ENSMUSG00000008129	ProperStrand	37	1	-6.0103
chr13	93360219	93360309	DNA	Charlie2a	MER1_type	chr13Charlie2a93359811	NonProperStrand	2	chr13	93357047	93357147	LTR	MTC-int	MaLR	chr13MTC-int93357006	NonProperStrand	1	1	-inf
chr7	140966927	140967027	protein_coding	Dhx32	intron	ENSMUSG00000030986	NonProperStrand	18	chr10	62852285	62852375	protein_coding	Dnajc12	intron	ENSMUSG00000036764	NonProperStrand	88	1	-13.6982
chr12	110526211	110526311	LINE	L1_Mm	L1	chr12L1_Mm110526237	ProperStrand	11	chr12	110526126	110526216	LINE	Lx2	L1	chr12Lx2110524579	ProperStrand	11	3	-22.1772
chr1	161035849	161035912	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	43	chr9	64175275	64175593	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-9.6141
chr11	99020271	99020294	LTR	RLTR20A2	ERVK	chr11RLTR20A299019852	ProperStrand	2	chr17	39847636	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	84328911	84329001	SINE	RSINE1	B4	chr17RSINE184328846	ProperStrand	2	chr17	84328714	84328814	Simple_repeat	(TTCC)n	Simple_repeat	chr17(TTCC)n84328717	NonProperStrand	1	1	-inf
chr8	13350829	13350874	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	chr1	89702509	89702562	protein_coding	Sag	intron	ENSMUSG00000056055	ProperStrand	125	2	-12.5316
chr11	78548709	78548799	LTR	ORR1A4	MaLR	chr11ORR1A478548641	ProperStrand	1	chr11	78548569	78548669	SINE	RSINE1	B4	chr11RSINE178548550	NonProperStrand	1	1	-inf
chr17	39846451	39846520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	75033247	75033263	protein_coding	Prkx	intron	ENSMUSG00000035725	ProperStrand	1	1	-inf
chr10	40258495	40258565	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	6619806	6619865	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	26	1	-7.0135
chr12	99645567	99645660	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr2	5379273	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.6132
chr17	7226676	7226766	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n7226578	ProperStrand	1	chr9	111281756	111281856	protein_coding	Trank1	intron	ENSMUSG00000062296	ProperStrand	13	1	-inf
chr8	54522337	54522464	Simple_repeat	(TC)n	Simple_repeat	chr8(TC)n54522333	NonProperStrand	1	chr9	123462058	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	chr17	50420131	50420172	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	1	-8.2072
chr4	117650644	117666573	antisense	9530034E10Rik	.	ENSMUSG00000086554	ProperStrand	92	chr4	117666615	117673490	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	89	6	-23.7095
chr3	151672417	151672517	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int151671270	NonProperStrand	1	chr3	151679985	151680075	LTR	RLTR10	ERVK	chr3RLTR10151679753	ProperStrand	1	1	-inf
chr17	22464389	22464489	LINE	L1Md_T	L1	chr17L1Md_T22463824	ProperStrand	1	chr12	67667892	67667982	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	1	-inf
chr17	31839044	31839134	SINE	B2_Mm2	B2	chr17B2_Mm231838999	NonProperStrand	1	chr17	31839209	31839309	SINE	B2_Mm2	B2	chr17B2_Mm231839204	NonProperStrand	1	1	-inf
chr2	29054278	29054368	protein_coding-noncoding	Ntng2	utr3	ENSMUSG00000035513	NonProperStrand	1	chr2	29054406	29054506	protein_coding	Ntng2	intron	ENSMUSG00000035513	NonProperStrand	31	1	-inf
chr17	39846954	39846981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	118432701	118432718	LTR	ETnERV2-int	ERVK	chr4ETnERV2-int118432474	NonProperStrand	2	1	-5.3533
chr11	113901594	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	chr4	141472968	141473023	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	1	-9.5113
chr18	32263945	32264035	LINE	L1M4c	L1	chr18L1M4c32263942	NonProperStrand	1	chr18	32263887	32263946	protein_coding	Iws1	utr3	ENSMUSG00000024384	ProperStrand	21	1	-inf
chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	115786818	115786864	protein_coding	Recql5	intron	ENSMUSG00000020752	ProperStrand	1	1	-inf
chr17	39843390	39843490	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr11	70910427	70910517	protein_coding	Nlrp1a	intron	ENSMUSG00000069830	NonProperStrand	19	1	-4.6992
chr11	87384658	87384721	protein_coding	Sept4	intron	ENSMUSG00000020486	NonProperStrand	2	chr12	78350924	78351011	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-13.3256
chr6	29419300	29419363	protein_coding	Atp6v1f	intron	ENSMUSG00000004285	ProperStrand	11	chr1	36834771	36834844	protein_coding	Zap70	intron	ENSMUSG00000026117	NonProperStrand	11	1	-18.9240
chr14	86314243	86314333	LINE	Lx3C	L1	chr14Lx3C86314095	ProperStrand	1	chr14	86313834	86313934	LTR	LTRIS_Mm	ERV1	chr14LTRIS_Mm86313625	NonProperStrand	1	1	-inf
chr3	56005514	56008289	LTR	MLT-int	MaLR	chr3MLT-int56007643	ProperStrand	1	chr3	56005416	56005516	SINE	B1_Mus1	Alu	chr3B1_Mus156005349	ProperStrand	1	1	-inf
chr15	35937273	35938174	LINE	L1MCa	L1	chr15L1MCa35937112	NonProperStrand	3	chr17	39846365	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr11	93925749	93925890	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	80	chr1	189126290	189126308	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	37	1	-12.4213
chr2	129126043	129126160	lincRNA	Gm14023	intron	ENSMUSG00000085498	ProperStrand	20	chr9	123461891	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr17	39847802	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	38053884	38053961	protein_coding	Diap1	intron	ENSMUSG00000024456	ProperStrand	2	1	-5.4040
chr3	46499005	46499095	LINE	Lx7	L1	chr3Lx746498669	ProperStrand	1	chr3	46499130	46499230	SINE	B2_Mm2	B2	chr3B2_Mm246499137	NonProperStrand	1	1	-inf
chr2	22744874	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr18	54699170	54699258	Simple_repeat	(TGGA)n	Simple_repeat	chr18(TGGA)n54699160	NonProperStrand	11	1	-10.2537
chr15	53327608	53327732	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	chr11	74136136	74136156	pseudogene	Gm12332	.	ENSMUSG00000083299	NonProperStrand	1	1	-inf
chr17	46384848	46384955	protein_coding	Polr1c	utr5	ENSMUSG00000067148	NonProperStrand	4	chr17	46385030	46385132	protein_coding	Yipf3	utr5	ENSMUSG00000071074	ProperStrand	2	2	-inf
chr19	53341731	53341831	SINE	B3A	B2	chr19B3A53341682	ProperStrand	3	chr19	53341593	53341683	SINE	PB1D7	Alu	chr19PB1D753341554	ProperStrand	2	2	-inf
chr7	116103229	116103289	lincRNA	Gm17719	intron	ENSMUSG00000074933	NonProperStrand	7	chr11	4704234	4704334	protein_coding	Nf2	intron	ENSMUSG00000009073	ProperStrand	20	1	-18.9516
chr7	127972570	127972623	SINE	MIRc	MIR	chr7MIRc127972568	NonProperStrand	15	chr8	18734509	18734579	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-9.7117
chr2	148665035	148665135	LINE	L1M3e	L1	chr2L1M3e148665059	ProperStrand	1	chr2	148664913	148665003	SINE	B3A	B2	chr2B3A148664915	ProperStrand	1	1	-inf
chr16	11114139	11114167	protein_coding	Txndc11	utr3	ENSMUSG00000022498	ProperStrand	30	chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-7.9563
chr4	28326465	28326555	LINE	Lx	L1	chr4Lx28326258	ProperStrand	1	chr4	28326649	28326749	LINE	Lx3B	L1	chr4Lx3B28326622	ProperStrand	1	1	-inf
chr9	113825823	113825888	protein_coding	Clasp2	intron	ENSMUSG00000033392	ProperStrand	70	chr15	80739949	80740044	protein_coding	Tnrc6b	intron	ENSMUSG00000047888	ProperStrand	52	1	-12.0011
chr7	96224700	96224786	Low_complexity	GA-rich	Low_complexity	chr7GA-rich96224682	ProperStrand	1	chr9	40804006	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr17	91624260	91624360	LINE	L2a	L2	chr17L2a91623924	NonProperStrand	1	chr17	91624482	91624572	LINE	L2a	L2	chr17L2a91624430	NonProperStrand	1	1	-inf
chr15	53236001	53236087	LINE	Lx	L1	chr15Lx53234346	ProperStrand	6	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	66	1	-16.6010
chr17	39848098	39848130	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	mmu-miR-714	0	21	miRNA	mmu-miR-714	.	mmu-miR-714	ProperStrand	5	1	-6.1691
chr11	23732284	23732342	LTR	MTA_Mm	MaLR	chr11MTA_Mm23732136	ProperStrand	5	chr6	3201470	3201544	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-7.8442
chrX	8154737	8154815	LINE	L1Md_A	L1	chrXL1Md_A8152211	NonProperStrand	3	chr4	147874125	147874193	protein_coding	Angptl7	exon	ENSMUSG00000028989	ProperStrand	2	2	-inf
chr8	54082447	54082499	LINE	L1Md_A	L1	chr8L1Md_A54082345	ProperStrand	3	chr8	54083153	54083214	LINE	L1Md_F2	L1	chr8L1Md_F254083031	ProperStrand	1	1	-inf
chr9	123462036	123462080	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr2	34738385	34738454	protein_coding	D730039F16Rik	intron	ENSMUSG00000026870	NonProperStrand	9	1	-4.5963
chr5	114851996	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr17	34907817	34908198	pseudogene	Skiv2l-ps1	.	ENSMUSG00000092543	NonProperStrand	19	1	-11.6344
chr6	120859447	120859491	protein_coding	Bid	intron	ENSMUSG00000004446	NonProperStrand	22	chr9	15315187	15315283	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-12.4881
chr6	25951967	25952057	LINE	L1VL2	L1	chr6L1VL225951734	ProperStrand	1	chr6	25951521	25951621	LINE	L1_Mus2	L1	chr6L1_Mus225951407	NonProperStrand	1	1	-inf
chr9	98644751	98644770	LTR	MLT1J	MaLR	chr9MLT1J98644497	ProperStrand	1	chr9	80133474	80133589	protein_coding-noncoding	Myo6	utr5	ENSMUSG00000033577	ProperStrand	1	1	-inf
chr14	55826782	55826798	LTR	MTD	MaLR	chr14MTD55826654	ProperStrand	1	chr17	39846817	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	3201467	3201568	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	79578275	79699433	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	106	2	-3.5110
chr2	22744838	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	34568252	34568393	protein_coding	BC051142	intron	ENSMUSG00000057246	ProperStrand	69	1	-6.5315
chr2	80559669	80559761	LINE	L1M2	L1	chr2L1M280559411	NonProperStrand	3	chr3	84022780	84022837	protein_coding	Trim2	intron	ENSMUSG00000027993	ProperStrand	141	1	-16.6927
chr13	23358956	23359026	LTR	MMERVK10C-int	ERVK	chr13MMERVK10C-int23358183	NonProperStrand	1	chr5	107904811	107904842	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-inf
chr3	83375359	83375377	Simple_repeat	(CA)n	Simple_repeat	chr3(CA)n83375276	NonProperStrand	7	chr9	123461931	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr4	150908327	150908399	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr12	3248357	3248439	protein_coding	Rab10	utr3	ENSMUSG00000020671	ProperStrand	66	1	-9.1819
chr9	25168610	25168700	LTR	MTD	MaLR	chr9MTD25168595	NonProperStrand	1	chr9	25168248	25168348	LTR	RLTR11A	ERVK	chr9RLTR11A25168032	NonProperStrand	1	1	-inf
chr5	100421837	100421901	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int100416898	ProperStrand	6	chr5	100423816	100423890	LTR	RLTR6-int	ERV1	chr5RLTR6-int100423781	ProperStrand	8	1	-inf
chr5	105798421	105798497	LINE	L1Md_F2	L1	chr5L1Md_F2105797620	NonProperStrand	27	chr5	105787006	105787072	LTR	ORR1D1	MaLR	chr5ORR1D1105786865	ProperStrand	2	1	-21.2142
chr16	44159714	44159739	protein_coding	Naa50	exon	ENSMUSG00000022698	ProperStrand	41	chr19	7105854	7105984	protein_coding	Stip1	intron	ENSMUSG00000024966	NonProperStrand	53	1	-13.0416
chr10	17723268	17723366	LTR	RLTR25A	ERVK	chr10RLTR25A17722785	ProperStrand	3	chr17	39846932	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr17	39847221	39847294	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	95979310	95979660	SINE	B1_Mus2	Alu	chr11B1_Mus295979532	ProperStrand	2	1	-6.5615
chr8	33882028	33882118	SINE	B1_Mur4	Alu	chr8B1_Mur433882031	ProperStrand	1	chr8	33881954	33882054	Simple_repeat	(CTTTG)n	Simple_repeat	chr8(CTTTG)n33881918	NonProperStrand	2	1	-inf
chr12	115341015	115341105	LINE	L1Md_F2	L1	chr12L1Md_F2115336897	ProperStrand	1	chr12	115127976	115128076	LINE	L1Md_F3	L1	chr12L1Md_F3115127260	ProperStrand	1	1	-inf
chr17	24993631	24993697	protein_coding	Hagh	exon	ENSMUSG00000024158	NonProperStrand	8	chr13	67787328	67787345	protein_coding	Zfp738	intron	ENSMUSG00000048280	NonProperStrand	5	1	-22.1864
chr8	86046039	86046091	LINE	L1_Mur3	L1	chr8L1_Mur386045933	NonProperStrand	1	chr17	39846415	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr4	50233404	50233494	LINE	Lx9	L1	chr4Lx950233391	NonProperStrand	1	chr4	50233542	50233642	LTR	RLTR41	ERV1	chr4RLTR4150233536	NonProperStrand	1	1	-inf
chr4	129525099	129525137	protein_coding	Ptp4a2	utr3	ENSMUSG00000028788	NonProperStrand	36	chr11	67486773	67486851	protein_coding	Gas7	intron	ENSMUSG00000033066	ProperStrand	38	1	-13.9824
chr1	118950310	118950400	LTR	RLTR1D	ERV1	chr1RLTR1D118950262	NonProperStrand	7	chr1	118950183	118950283	LTR	RMER19C	ERVK	chr1RMER19C118949727	ProperStrand	6	5	-inf
chr11	119915696	119916026	LINE	L1MB3	L1	chr11L1MB3119915509	ProperStrand	1	chr8	121597493	121597551	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	97	1	-inf
chr11	113901597	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	chr12	109650485	109650620	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-6.2441
chr17	39843809	39843909	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr14	48168555	48168604	protein_coding	Atg14	intron	ENSMUSG00000037526	NonProperStrand	12	1	-6.0801
chr8	69369362	69369460	LINE	L1Md_T	L1	chr8L1Md_T69369077	NonProperStrand	3	chr11	60178517	60178580	protein_coding	Lrrc48	intron	ENSMUSG00000056598	ProperStrand	98	1	-17.4212
chr19	30041539	30041639	LTR	MER21B	ERV1	chr19MER21B30041548	NonProperStrand	1	chr19	30041440	30041530	SINE	ID4_	ID	chr19ID4_30041452	NonProperStrand	1	1	-inf
chr5	146261005	146261042	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	50171970	50172071	LTR	MLT1F2	MaLR	chr9MLT1F250171919	ProperStrand	2	2	-inf
chr2	180699601	180699689	antisense	Gm14341	.	ENSMUSG00000087293	NonProperStrand	32	chr13	44869607	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.7157
chr12	28711899	28711971	LINE	Lx2	L1	chr12Lx228710498	ProperStrand	8	chr1	74393896	74394085	protein_coding-noncoding	Pnkd	utr5	ENSMUSG00000026179	ProperStrand	1	1	-inf
chr5	146260993	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	140870622	140870640	protein_coding	Mmp21	exon	ENSMUSG00000030981	ProperStrand	55	3	-12.2735
chr17	39846900	39847007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	58908607	58908656	SINE	B1_Mus2	Alu	chr1B1_Mus258908554	ProperStrand	1	1	-inf
chr12	80223605	80223705	LTR	MTA_Mm	MaLR	chr12MTA_Mm80223328	NonProperStrand	3	chr12	80223717	80223807	LTR	MTD	MaLR	chr12MTD80223723	NonProperStrand	3	2	-20.2273
chr9	110281267	110281335	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr13	67846629	67846687	protein_coding	4930441O14Rik	intron	ENSMUSG00000044081	ProperStrand	6	1	-12.3141
chr1	36070425	36070475	LTR	ORR1B1-int	MaLR	chr1ORR1B1-int36070152	ProperStrand	5	chr1	36070704	36070744	LTR	RMER20B	ERVK	chr1RMER20B36070567	NonProperStrand	3	1	-inf
chr5	8401748	8401838	protein_coding-noncoding	Dbf4	utr3	ENSMUSG00000002297	ProperStrand	6	chr5	8401601	8401701	protein_coding	Dbf4	intron	ENSMUSG00000002297	ProperStrand	25	1	-18.8476
chr5	56096359	56096459	LINE	Lx9	L1	chr5Lx956096305	ProperStrand	1	chr5	56096674	56096764	Low_complexity	A-rich	Low_complexity	chr5A-rich56096682	NonProperStrand	1	1	-inf
chr2	31494614	31494699	antisense	Gm13425	.	ENSMUSG00000085224	NonProperStrand	14	chr2	31496495	31496546	protein_coding	Prdm12	intron	ENSMUSG00000079466	ProperStrand	45	1	-15.5562
chr5	149695178	149695279	protein_coding	Katnal1	intron	ENSMUSG00000041298	NonProperStrand	29	chr15	99037915	99037973	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	57	1	-13.5974
chr17	39847823	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	35611727	35611826	SINE	B3	B2	chr7B335611648	NonProperStrand	2	1	-5.4040
chr5	150289701	150289763	LTR	ORR1D2	MaLR	chr5ORR1D2150289560	ProperStrand	1	chr1	136051116	136051133	SINE	ID_B1	B4	chr1ID_B1136051083	ProperStrand	1	1	-inf
chr16	18295732	18295772	SINE	B2_Mm1a	B2	chr16B2_Mm1a18295604	NonProperStrand	1	chr1	181129046	181129144	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-inf
chr10	91118386	91118451	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	9	chr13	44869574	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-8.2984
chr4	102298387	102298477	SINE	B1_Mm	Alu	chr4B1_Mm102298395	ProperStrand	1	chr4	102298156	102298256	Simple_repeat	(TCCCC)n	Simple_repeat	chr4(TCCCC)n102298183	NonProperStrand	1	1	-inf
chr2	3762384	3762478	LINE	L1Md_T	L1	chr2L1Md_T3759542	ProperStrand	2	chr4	47385128	47385165	protein_coding	Tgfbr1	intron	ENSMUSG00000007613	ProperStrand	20	1	-20.4416
chr7	126491937	126492004	DNA	URR1B	MER1_type	chr7URR1B126491827	ProperStrand	1	chr14	70306380	70306466	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	65	1	-inf
chr17	39847230	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr3	132854944	132855036	protein_coding	D630013G24Rik	intron	ENSMUSG00000040969	ProperStrand	6	1	-3.9545
chr17	39846746	39846796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	37999788	37999828	LTR	RLTR15	ERVK	chr17RLTR1537999676	NonProperStrand	1	1	-inf
chr2	129790286	129790386	DNA	URR1B	MER1_type	chr2URR1B129790272	ProperStrand	1	chr2	129789924	129790014	LINE	L1_Mur3	L1	chr2L1_Mur3129789893	ProperStrand	2	1	-inf
chr13	55285138	55285228	LTR	RMER12	ERVK	chr13RMER1255285138	ProperStrand	1	chr13	55285261	55285361	LTR	RMER12	ERVK	chr13RMER1255285246	NonProperStrand	1	1	-inf
chr13	73798478	73798960	LTR	MTC	MaLR	chr13MTC73798478	NonProperStrand	1	chr17	39846768	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	81311993	81312091	LTR	RLTR17	ERVK	chr10RLTR1781311817	ProperStrand	3	chr17	39847655	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-inf
chr17	4082232	4082265	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr10	20260096	20260171	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	1	-4.4368
chr7	27586555	27586623	LINE	Lx3A	L1	chr7Lx3A27586525	ProperStrand	1	chr7	27580926	27580972	LINE	Lx5	L1	chr7Lx527580402	NonProperStrand	4	1	-inf
chr17	39847766	39847904	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	109826648	109826664	protein_coding	Nfat5	intron	ENSMUSG00000003847	NonProperStrand	7	2	-4.7560
chr7	30439280	30439380	LTR	MurERV4_19-int	ERVK	chr7MurERV4_19-int30439227	NonProperStrand	2	chr7	30439113	30439203	LTR	RLTR20B1	ERVK	chr7RLTR20B130438837	ProperStrand	2	2	-inf
chr4	45105636	45108006	LINE	Lx6	L1	chr4Lx645105570	ProperStrand	2	chr17	39846816	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	35384484	35384584	protein_coding	Ddx39b	intron	ENSMUSG00000019432	NonProperStrand	9	chr9	74733086	74733177	protein_coding	Onecut1	intron	ENSMUSG00000043013	ProperStrand	2	1	-20.8824
chr11	62353241	62353290	SINE	ID2	ID	chr11ID262353207	ProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr2	130277961	130278236	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	chrX	157429768	157429868	protein_coding	Cdkl5	intron	ENSMUSG00000031292	NonProperStrand	9	4	-inf
chr17	39847636	39847720	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	120951093	120951153	SINE	ID4	ID	chr11ID4120951102	NonProperStrand	1	1	-inf
chr2	132750968	132750989	protein_coding-noncoding	Fermt1	utr3	ENSMUSG00000027356	NonProperStrand	1	chr11	3647525	3647560	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	1	-inf
chr17	39847440	39847490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	103318775	103318792	protein_coding	Cat	intron	ENSMUSG00000027187	NonProperStrand	3	1	-4.3512
chr11	88853811	88853837	SINE	B1_Mur1	Alu	chr11B1_Mur188853818	ProperStrand	1	chr4	149120029	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr14	18780610	18780634	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr9	15326417	15326509	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-10.0955
chr17	39843353	39843440	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr17	50195521	50195544	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	12	1	-5.6158
chr7	101621723	101621750	LINE	L1Md_F2	L1	chr7L1Md_F2101619771	NonProperStrand	1	chr12	110691087	110691205	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	1	-inf
chr6	67271322	67271977	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	chr3	129970064	129970081	protein_coding	Col25a1	intron	ENSMUSG00000058897	NonProperStrand	112	1	-8.3098
chr7	27671074	27671134	LTR	RLTR1B-int	ERV1	chr7RLTR1B-int27668638	ProperStrand	3	chr9	123461840	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr17	45978954	45979044	LTR	MTC	MaLR	chr17MTC45978960	NonProperStrand	1	chr17	45979172	45979272	LTR	ORR1D1	MaLR	chr17ORR1D145979117	ProperStrand	1	1	-inf
chr16	35814794	35814894	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	chr17	85018987	85019077	protein_coding	Plekhh2	exon	ENSMUSG00000040852	ProperStrand	89	2	-14.1509
chr17	39848165	39848255	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	30342710	30342941	SINE	B4A	B4	chr2B4A30342697	NonProperStrand	2	1	-8.4422
chr11	113458096	113458128	protein_coding	Slc39a11	intron	ENSMUSG00000041654	ProperStrand	274	chr15	94660650	94660762	protein_coding	Tmem117	intron	ENSMUSG00000063296	ProperStrand	43	1	-9.6502
chr4	41202310	41202410	protein_coding	Ubap2	intron	ENSMUSG00000028433	ProperStrand	81	chr6	50113912	50114002	protein_coding	Mpp6	intron	ENSMUSG00000038388	ProperStrand	34	1	-12.5668
chr9	70453530	70453633	protein_coding	Fam63b	intron	ENSMUSG00000042444	ProperStrand	34	chr19	9008581	9008611	protein_coding	Eml3	exon	ENSMUSG00000071647	ProperStrand	68	1	-12.9183
chr3	51294469	51294544	protein_coding	Rab33b	intron	ENSMUSG00000027739	NonProperStrand	6	chr1	167239794	167239864	protein_coding	Gpr161	intron	ENSMUSG00000040836	NonProperStrand	180	1	-14.5878
chr8	102033097	102033187	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	NonProperStrand	16	chr8	102048847	102048947	protein_coding	A330008L17Rik	intron	ENSMUSG00000052479	ProperStrand	59	1	-14.7518
chr3	86139238	86141277	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	94	chr11	53670722	53670825	protein_coding	Gm12216	intron	ENSMUSG00000081769	ProperStrand	26	1	-12.8128
chr5	52160342	52160417	LINE	L1_Mus1	L1	chr5L1_Mus152159968	ProperStrand	2	chr17	39843749	39843813	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-10.2298
chr15	98548145	98548176	protein_coding	Ccdc65	intron	ENSMUSG00000003354	NonProperStrand	19	chr7	125681252	125693148	protein_coding	Tmc7	utr3	ENSMUSG00000042246	ProperStrand	40	1	-15.1744
chr11	109011656	109011716	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr6	147013781	147013862	protein_coding	Mrps35	intron	ENSMUSG00000040112	ProperStrand	21	1	-8.2014
chr15	81709561	81710370	protein_coding	Aco2	intron	ENSMUSG00000022477	NonProperStrand	77	chr4	123474791	123474836	protein_coding	Rhbdl2	intron	ENSMUSG00000043333	NonProperStrand	52	2	-18.7855
chr17	39846453	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	35957504	35957571	SINE	B3	B2	chr17B335957517	ProperStrand	1	1	-inf
chr14	32184726	32184754	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	39	chr6	146360951	146360969	protein_coding	Itpr2	intron	ENSMUSG00000030287	ProperStrand	12	1	-16.1826
chr6	117925483	117925525	SINE	B3	B2	chr6B3117925352	NonProperStrand	3	chr9	123462108	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr11	51994197	51994257	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	158	chr11	76330232	76330323	protein_coding	Abr	intron	ENSMUSG00000017631	ProperStrand	233	1	-7.3712
chr17	39846750	39846832	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	129600458	129600607	SINE	ID_B1	B4	chr4ID_B1129600464	ProperStrand	1	1	-inf
chr19	5905180	5905270	protein_coding-noncoding	Dpf2	utr3	ENSMUSG00000024826	ProperStrand	8	chr19	5905046	5905146	protein_coding	Dpf2	intron	ENSMUSG00000024826	ProperStrand	23	2	-inf
chr12	54696809	54696899	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr19	10095367	10095467	protein_coding	Rab3il1	intron	ENSMUSG00000024663	NonProperStrand	44	1	-11.0046
chr7	118109094	118109132	protein_coding	Mrvi1	intron	ENSMUSG00000005611	ProperStrand	87	chr6	71816188	71816265	protein_coding	Immt	intron	ENSMUSG00000052337	NonProperStrand	25	1	-13.0486
chr14	69695579	69695669	LINE	L1_Mus3	L1	chr14L1_Mus369695464	ProperStrand	2	chr5	117394656	117394756	SINE	B4A	B4	chr5B4A117394618	ProperStrand	1	1	-inf
chr17	39846718	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	30955693	30958002	protein_coding	4930471M23Rik	exon	ENSMUSG00000029175	NonProperStrand	19	4	-4.8386
chr13	12029197	12029218	protein_coding	Ryr2	intron	ENSMUSG00000021313	ProperStrand	81	chr1	34035475	34035597	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	828	1	-6.1936
chr10	77052312	77055640	protein_coding-noncoding	Pttg1ip	utr5	ENSMUSG00000009291	NonProperStrand	9	chr10	77053635	77054952	protein_coding	Pttg1ip	intron	ENSMUSG00000009291	NonProperStrand	42	8	-inf
chr11	33295758	33295819	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	chr12	23940260	23940343	pseudogene	Gm10476	.	ENSMUSG00000078374	ProperStrand	4	1	-13.1086
chr5	109682896	109682986	LINE	Lx	L1	chr5Lx109682705	ProperStrand	1	chr5	109683196	109683296	LTR	RLTR13A3	ERVK	chr5RLTR13A3109683089	ProperStrand	1	1	-inf
chr8	73327125	73327225	SINE	B1_Mur4	Alu	chr8B1_Mur473327065	ProperStrand	1	chr8	73327225	73327315	SINE	RSINE1	B4	chr8RSINE173327237	ProperStrand	1	1	-inf
chr12	78350925	78351008	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr6	65073252	65074811	protein_coding	Hpgds	intron	ENSMUSG00000029919	NonProperStrand	21	1	-7.9946
chr17	66150405	66150602	protein_coding	Ppp4r1	intron	ENSMUSG00000061950	ProperStrand	30	chr15	84245445	84245526	protein_coding	1810041L15Rik	intron	ENSMUSG00000062760	NonProperStrand	118	1	-12.0652
chr13	23739224	23739242	LTR	MTA_Mm-int	MaLR	chr13MTA_Mm-int23738136	NonProperStrand	71	chr11	88356719	88356747	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-5.9313
chr13	29924594	29924707	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr5	143758481	143758497	protein_coding	Rnf216	intron	ENSMUSG00000045078	NonProperStrand	9	1	-11.8295
chr8	63704918	63705018	protein_coding	Sh3rf1	exon	ENSMUSG00000031642	NonProperStrand	8	chr8	48312605	48312695	protein_coding	Stox2	intron	ENSMUSG00000038143	NonProperStrand	8	1	-19.9835
chr2	152669609	152669700	SINE	B2_Mm1t	B2	chr2B2_Mm1t152669583	ProperStrand	4	chr2	152669724	152677601	protein_coding	Tpx2	intron	ENSMUSG00000027469	ProperStrand	42	2	-inf
chr9	49002717	49002807	LINE	Lx8	L1	chr9Lx849001801	NonProperStrand	2	chr9	49002802	49002902	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n49002804	ProperStrand	1	1	-inf
chr1	161037604	161037675	LINE	L1MEc	L1	chr1L1MEc161037551	ProperStrand	11	chr2	13878858	13878907	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	12	1	-18.9083
chr19	18421457	18421557	LINE	Lx5	L1	chr19Lx518421322	ProperStrand	1	chr19	18420857	18420947	SINE	ID_B1	B4	chr19ID_B118420866	ProperStrand	1	1	-inf
chr11	109011810	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	109012016	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	1	-6.3446
chr7	114425275	114425336	lincRNA	Gm15514	intron	ENSMUSG00000057215	ProperStrand	3	chr5	132400641	132400730	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-13.5635
chr4	55588714	55588804	lincRNA	Gm12511	intron	ENSMUSG00000066176	ProperStrand	2	chr17	35384412	35384512	protein_coding	Ddx39b	intron	ENSMUSG00000019432	NonProperStrand	9	1	-inf
chr6	109006307	109006407	LINE	Lx5	L1	chr6Lx5109006153	NonProperStrand	1	chr6	109006085	109006175	Simple_repeat	(TCTCCC)n	Simple_repeat	chr6(TCTCCC)n109006073	ProperStrand	1	1	-inf
chr5	136488249	136488278	protein_coding	Dtx2	exon	ENSMUSG00000004947	NonProperStrand	47	chr5	136560603	136560642	protein_coding	Rasa4	intron	ENSMUSG00000004952	NonProperStrand	21	1	-14.6464
chr15	31593535	31593569	LINE	L1_Mus1	L1	chr15L1_Mus131593203	ProperStrand	4	chr17	39846818	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr18	27646626	27646726	LTR	ORR1C2-int	MaLR	chr18ORR1C2-int27645870	NonProperStrand	1	chr18	27646894	27646984	LTR	ORR1C2	MaLR	chr18ORR1C227646711	NonProperStrand	1	1	-inf
chr1	160269586	160269623	protein_coding	Fam5b	intron	ENSMUSG00000004031	ProperStrand	20	chr7	80899940	80899987	protein_coding	Fam174b	intron	ENSMUSG00000078670	NonProperStrand	23	1	-16.2018
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	10	chr12	53983827	53983945	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	198	1	-13.2929
chr7	80060077	80060123	LINE	L3	CR1	chr7L380060037	NonProperStrand	1	chr7	80048088	80048148	LTR	RMER15	ERVL	chr7RMER1580048068	NonProperStrand	2	1	-inf
chr17	80631947	80632014	LTR	ORR1A0	MaLR	chr17ORR1A080631725	ProperStrand	1	chr15	75950051	75950085	protein_coding	BC024139	utr3	ENSMUSG00000044361	NonProperStrand	1	1	-inf
chr17	39845181	39845224	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr9	32199495	32199609	protein_coding	Kcnj1	intron	ENSMUSG00000041248	ProperStrand	9	1	-5.8320
chr17	39845305	39845430	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr18	79080238	79080255	protein_coding	Setbp1	intron	ENSMUSG00000024548	ProperStrand	76	2	-3.3960
chr6	3201457	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	62466416	62466488	protein_coding	Rufy2	utr3	ENSMUSG00000020070	NonProperStrand	9	1	-6.5801
chr17	39847207	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	65175893	65175937	SINE	B1_Mur4	Alu	chr1B1_Mur465175894	ProperStrand	1	1	-inf
chr13	55678058	55678107	LTR	ORR1A2	MaLR	chr13ORR1A255677928	ProperStrand	1	chr13	55678556	55678630	LTR	RMER2	ERV1	chr13RMER255678521	ProperStrand	1	1	-inf
chr3	90273970	90274338	LINE	L1_Mus3	L1	chr3L1_Mus390273791	ProperStrand	4	chr3	90275485	90275588	LINE	Lx5	L1	chr3Lx590275176	ProperStrand	2	2	-inf
chr10	77201110	77201210	LTR	ORR1A3	MaLR	chr10ORR1A377201018	ProperStrand	3	chr10	77201241	77201331	SINE	B1_Mus1	Alu	chr10B1_Mus177201257	ProperStrand	3	3	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	59809676	59809731	protein_coding	Pemt	intron	ENSMUSG00000000301	ProperStrand	36	1	-7.8287
chr11	53417685	53417828	protein_coding	Il4	intron	ENSMUSG00000000869	NonProperStrand	35	chr11	53417557	53417701	protein_coding	Kif3a	utr3	ENSMUSG00000018395	ProperStrand	47	4	-inf
chrX	53362624	53362676	LINE	L1_Mus1	L1	chrXL1_Mus153362473	ProperStrand	1	chrX	53365629	53365691	LINE	L1_Mus3	L1	chrXL1_Mus353363668	ProperStrand	1	1	-inf
chr1	72824906	72849117	LTR	MLT1B	MaLR	chr1MLT1B72824512	NonProperStrand	58	chr1	72849185	72849285	Low_complexity	CT-rich	Low_complexity	chr1CT-rich72849155	ProperStrand	18	3	-22.2767
chrX	87238359	87238388	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr6	84860693	84890530	protein_coding	Exoc6b	intron	ENSMUSG00000033769	ProperStrand	181	1	-7.2796
chr14	60575755	60575819	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	chr16	33478202	33478276	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	1	-7.9967
chr7	34213671	34213771	LINE	L1Md_F2	L1	chr7L1Md_F234213371	NonProperStrand	20	chr7	34213793	34213885	LINE	L1Md_F2	L1	chr7L1Md_F234213684	NonProperStrand	96	12	-21.3865
chr13	93324058	93324097	LTR	RLTR4_MM-int	ERV1	chr13RLTR4_MM-int93322526	ProperStrand	5	chr17	39847549	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr17	39848486	39848593	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr7	63887734	63887774	LINE	Lx9	L1	chr7Lx963887631	NonProperStrand	10	1	-4.9823
chr6	109620608	109620627	LINE	Lx4A	L1	chr6Lx4A109620110	NonProperStrand	1	chr17	39846588	39846719	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr11	8603353	8603448	LINE	L1Md_F2	L1	chr11L1Md_F28602931	ProperStrand	1	chr11	60864034	60864088	protein_coding	Kcnj12	intron	ENSMUSG00000042529	NonProperStrand	21	1	-inf
chr8	40556224	40556304	LINE	L1_Mus4	L1	chr8L1_Mus440555742	ProperStrand	6	chr17	75542949	75543009	protein_coding	Ltbp1	intron	ENSMUSG00000001870	NonProperStrand	24	1	-18.9659
chr1	30950163	30950253	LTR	MTE2b	MaLR	chr1MTE2b30950120	NonProperStrand	3	chr1	30949758	30949858	LTR	ORR1A2	MaLR	chr1ORR1A230949510	NonProperStrand	3	2	-20.2273
chr14	63949569	63949603	LTR	MTE2b	MaLR	chr14MTE2b63949481	ProperStrand	1	chr12	4161093	4161126	protein_coding	Adcy3	intron	ENSMUSG00000020654	ProperStrand	36	1	-inf
chr14	19781307	19781340	LINE	L1Md_F2	L1	chr14L1Md_F219780606	ProperStrand	12	chr14	19810004	19810084	Low_complexity	GA-rich	Low_complexity	chr14GA-rich19810003	ProperStrand	2	1	-inf
chr4	151101037	151101127	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	chr2	75499743	75499843	protein_coding	Hnrnpa3	exon	ENSMUSG00000059005	ProperStrand	1	1	-inf
chr12	78350924	78351030	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr9	118674950	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	7	-8.2647
chr17	39846742	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	101071003	101071093	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n101071023	NonProperStrand	1	1	-inf
chr7	49563689	49563769	LINE	L1_Mus3	L1	chr7L1_Mus349562286	ProperStrand	1	chr17	39847552	39847595	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr6	28811055	28811191	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-7.4430
chr8	73326089	73326112	SINE	PB1D7	Alu	chr8PB1D773326056	ProperStrand	1	chr5	109789811	109789844	protein_coding	Vmn2r16	exon	ENSMUSG00000092080	NonProperStrand	9	1	-inf
chr3	144594203	144594275	protein_coding	AI747448	intron	ENSMUSG00000074195	NonProperStrand	15	chr17	32213596	32213624	pseudogene	Pdxk-ps	.	ENSMUSG00000002791	ProperStrand	20	1	-17.0896
chr11	89081303	89081393	LINE	Lx8	L1	chr11Lx889079929	NonProperStrand	1	chr11	89082129	89082229	LINE	Lx8	L1	chr11Lx889081618	NonProperStrand	1	1	-inf
chrX	20669131	20669221	LINE	L1Md_F3	L1	chrXL1Md_F320668971	NonProperStrand	7	chr2	5855988	5856016	protein_coding	Dhtkd1	intron	ENSMUSG00000025815	NonProperStrand	42	1	-17.2165
chr19	5797924	5797976	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr2	152286865	152286917	protein_coding	Defb23	intron	ENSMUSG00000074681	NonProperStrand	4	1	-10.0252
chr18	42229682	42229792	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	NonProperStrand	45	chr4	145564240	145564313	protein_coding	Gm13248	intron	ENSMUSG00000063245	NonProperStrand	17	1	-15.1605
chr7	28477328	28477428	protein_coding-noncoding	C030039L03Rik	utr5	ENSMUSG00000057093	NonProperStrand	2	chr7	28477487	28477577	protein_coding	C030039L03Rik	utr5	ENSMUSG00000057093	NonProperStrand	4	2	-inf
chr3	27080872	27080963	SINE	ID4_	ID	chr3ID4_27080880	NonProperStrand	1	chr3	27081465	27081565	SINE	ID_B1	B4	chr3ID_B127081466	NonProperStrand	1	1	-inf
chr2	5379302	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr3	105943862	105951683	protein_coding	Chi3l3	intron	ENSMUSG00000040809	ProperStrand	17	1	-7.0412
chr4	43492778	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr10	39959641	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	5	1	-12.2439
chr17	39847846	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	94875947	94876049	LTR	RMER4A	ERVK	chr17RMER4A94875956	NonProperStrand	1	1	-inf
chr17	70963685	70963795	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	31127260	31127297	protein_coding	Ncs1	intron	ENSMUSG00000062661	NonProperStrand	50	1	-6.5683
chr10	53612901	53615872	LINE	Lx9	L1	chr10Lx953612675	ProperStrand	1	chr1	192745640	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	1	-inf
chr10	75713428	75713484	SINE	B3A	B2	chr10B3A75713433	ProperStrand	1	chr11	87426788	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	66	1	-inf
chr1	103694657	103694750	SINE	B4A	B4	chr1B4A103694643	NonProperStrand	1	chr1	74160969	74161006	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	1	-inf
chr1	190906477	190906577	SINE	B1_Mur2	Alu	chr1B1_Mur2190906478	NonProperStrand	1	chr1	190906290	190906380	SINE	B3A	B2	chr1B3A190906268	ProperStrand	1	1	-inf
chr9	110281291	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr12	109646726	109651878	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	2	-5.9007
chr11	20017890	20017949	LTR	RMER19B	ERVK	chr11RMER19B20017891	ProperStrand	1	chr1	63577220	63577254	protein_coding-noncoding	Adam23	utr5	ENSMUSG00000025964	ProperStrand	31	1	-inf
chr17	39847531	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	30899974	30907682	protein_coding	Kcnk3	intron	ENSMUSG00000049265	NonProperStrand	23	4	-4.1054
chr3	65386702	65386800	DNA	Charlie1a	MER1_type	chr3Charlie1a65386672	NonProperStrand	1	chr3	65386978	65387068	SINE	B3	B2	chr3B365386886	ProperStrand	2	1	-inf
chr17	39847244	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	118699758	118699831	Other	RMER1A	Other	chr14RMER1A118699752	NonProperStrand	6	1	-3.9545
chr2	20519745	20519825	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	chr8	95850249	95850277	protein_coding	Ces1g	intron	ENSMUSG00000057074	ProperStrand	20	2	-17.1176
chr19	46259654	46259730	protein_coding	Gbf1	intron	ENSMUSG00000025224	ProperStrand	72	chr6	93865342	93865389	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-5.9256
chr10	80332296	80332386	SINE	B1_Mur4	Alu	chr10B1_Mur480332271	NonProperStrand	4	chr10	80331832	80331933	SINE	B1_Mus2	Alu	chr10B1_Mus280331822	ProperStrand	4	4	-inf
chr2	154568019	154568109	SINE	B1_Mus1	Alu	chr2B1_Mus1154567956	ProperStrand	2	chr2	154567816	154567916	SINE	B3	B2	chr2B3154567781	NonProperStrand	2	2	-inf
chr4	43492785	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	709	chr15	27776866	27776958	protein_coding	Trio	intron	ENSMUSG00000022263	ProperStrand	54	1	-7.3027
chr13	51729852	51730089	LTR	MMVL30-int	ERV1	chr13MMVL30-int51729836	ProperStrand	18	chr13	51729734	51729853	LTR	RLTR6_Mm	ERV1	chr13RLTR6_Mm51729297	ProperStrand	2	2	-inf
chr3	133337154	133337265	LINE	L1Md_F2	L1	chr3L1Md_F2133337061	NonProperStrand	2	chr10	63016540	63017235	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	104	1	-18.4181
chr17	15498166	15498284	LINE	Lx9	L1	chr17Lx915498155	ProperStrand	5	chr17	39847348	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.2379
chr17	39846595	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	98908672	98908754	protein_coding	Igfbp4	utr5	ENSMUSG00000017493	ProperStrand	5	1	-3.1907
chr17	39847179	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	136231774	136231792	protein_coding	Styxl1	intron	ENSMUSG00000019178	NonProperStrand	1	1	-inf
chr11	64028752	64028842	DNA	Ricksha_c	MuDR	chr11Ricksha_c64028695	NonProperStrand	1	chr17	39846453	39846509	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	64281112	64281212	LINE	Lx9	L1	chr12Lx964281067	NonProperStrand	1	chr12	64281391	64281481	LTR	RLTR13B3	ERVK	chr12RLTR13B364281337	ProperStrand	1	1	-inf
chr17	39845848	39845948	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	58049545	58049574	SINE	RSINE1	B4	chr11RSINE158049486	NonProperStrand	1	1	-inf
chr10	115492374	115492392	protein_coding	Ptprr	intron	ENSMUSG00000020151	ProperStrand	5	chr9	110281285	110281328	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-12.7185
chr12	4190720	4190800	protein_coding	Adcy3	intron	ENSMUSG00000020654	ProperStrand	36	chrX	95424288	95424324	protein_coding	Ar	intron	ENSMUSG00000046532	NonProperStrand	15	1	-15.8875
chr8	22243770	22243893	LINE	L1_Mus1	L1	chr8L1_Mus122242950	ProperStrand	3	chr13	54190147	54190183	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	50	1	-18.9930
chr19	7469313	7469344	LTR	RLTR1B	ERV1	chr19RLTR1B7469072	ProperStrand	2	chr19	7470479	7470517	SINE	B1_Mus2	Alu	chr19B1_Mus27470467	ProperStrand	1	1	-inf
chr7	58399334	58399390	LINE	Lx3_Mus	L1	chr7Lx3_Mus58399112	NonProperStrand	2	chr1	181201512	181201582	protein_coding	Smyd3	intron	ENSMUSG00000055067	ProperStrand	161	1	-17.5366
chr6	109126635	109126654	LINE	L2b	L2	chr6L2b109126581	ProperStrand	1	chr9	123461882	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr9	104182552	104182642	LINE	Lx	L1	chr9Lx104182460	NonProperStrand	2	chr9	104182032	104182534	LINE	Lx9	L1	chr9Lx9104181809	NonProperStrand	7	2	-inf
chr7	96242478	96242526	LTR	RLTR10C	ERVK	chr7RLTR10C96242441	ProperStrand	3	chr9	100901754	100901781	protein_coding	Pccb	intron	ENSMUSG00000032527	NonProperStrand	19	1	-19.2235
chrX	104274886	104274910	LINE	L1Md_F2	L1	chrXL1Md_F2104271892	NonProperStrand	1	chrX	104289581	104289702	protein_coding	P2ry10	intron	ENSMUSG00000050921	NonProperStrand	6	1	-inf
chr5	136923933	136924038	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	113	chr2	5379307	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-3.3634
chr17	25469893	25469910	LINE	L1MD	L1	chr17L1MD25469845	NonProperStrand	1	chr17	39847498	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847100	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	35805772	35805883	LTR	RLTR40	ERVK	chr18RLTR4035805739	ProperStrand	1	1	-inf
chr5	115859331	115859410	antisense	Gm13832	.	ENSMUSG00000087292	ProperStrand	43	chr13	44869576	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.1358
chr10	75860155	75860221	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	78	chr4	147026544	147026602	protein_coding	2610305D13Rik	intron	ENSMUSG00000066000	NonProperStrand	8	1	-15.6356
chr10	127516015	127516054	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	148	chr4	25711527	25711576	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	63	1	-10.1122
chr9	99529373	99529401	LINE	L1MB2	L1	chr9L1MB299529321	ProperStrand	1	chr17	39847082	39847166	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr9	21568867	21568981	LINE	L1MB2	L1	chr9L1MB221568826	ProperStrand	1	chr4	87957926	87957967	protein_coding	BC057079	intron	ENSMUSG00000038368	NonProperStrand	76	1	-inf
chr6	72116870	72116932	LINE	Lx7	L1	chr6Lx772115365	ProperStrand	1	chr17	39847882	39847954	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr16	52721522	52721612	LINE	L1Md_F2	L1	chr16L1Md_F252720966	ProperStrand	1	chr16	52722041	52722141	LTR	RMER19B	ERVK	chr16RMER19B52722023	ProperStrand	1	1	-inf
chr5	33521492	33521524	LTR	RMER19B	ERVK	chr5RMER19B33521324	ProperStrand	29	chr6	124747566	124747608	LTR	MMETn-int	ERVK	chr6MMETn-int124747368	ProperStrand	10	1	-17.1366
chr17	39846645	39846709	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	68086219	68086284	protein_coding	Stk39	intron	ENSMUSG00000027030	NonProperStrand	12	2	-3.1058
chr1	35734805	35734895	LTR	MTD	MaLR	chr1MTD35734791	NonProperStrand	1	chr1	35734892	35734992	SINE	B2_Mm2	B2	chr1B2_Mm235734916	ProperStrand	1	1	-inf
chr11	101605008	101605038	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	chr2	30302211	30302320	protein_coding	Ppp2r4	utr3	ENSMUSG00000039515	ProperStrand	13	1	-15.6080
chr17	39843691	39843814	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr10	105238419	105238456	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	43	1	-3.5869
chr2	119981913	119982013	LINE	L1M5	L1	chr2L1M5119981936	ProperStrand	1	chr2	119981774	119981866	LINE	L1MC	L1	chr2L1MC119981793	ProperStrand	1	1	-inf
chr8	120549586	120549686	LINE	L1ME1	L1	chr8L1ME1120549606	NonProperStrand	7	chr8	120549459	120549550	SINE	B3A	B2	chr8B3A120549416	NonProperStrand	8	7	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr4	48467678	48467817	protein_coding	Tex10	intron	ENSMUSG00000028345	ProperStrand	22	1	-11.8397
chr7	100749671	100749715	LINE	L1Md_F2	L1	chr7L1Md_F2100748539	ProperStrand	3	chr9	123461835	123461956	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-7.0114
chr8	114882429	114882491	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n114882441	ProperStrand	2	chr11	107220471	107220557	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	2	-inf
chr7	142585298	142585398	DNA	URR1B	MER1_type	chr7URR1B142585271	ProperStrand	1	chr7	142585479	142585569	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n142585492	NonProperStrand	1	1	-inf
chr16	11143905	11143995	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	262	chr5	107904341	107904441	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-7.5106
chr17	12159645	12159675	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr19	25335489	25335582	protein_coding	Kank1	intron	ENSMUSG00000032702	ProperStrand	85	1	-9.0440
chr17	39846827	39846918	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	146336488	146336505	protein_coding	Samd13	intron	ENSMUSG00000048652	ProperStrand	1	1	-inf
chr6	6052804	6052836	protein_coding	Slc25a13	intron	ENSMUSG00000015112	ProperStrand	218	chr18	59175196	59175218	protein_coding	Adamts19	intron	ENSMUSG00000053441	ProperStrand	10	1	-13.1009
chr10	119499824	119499925	protein_coding	Grip1	intron	ENSMUSG00000034813	ProperStrand	62	chr2	140063259	140063307	protein_coding	Sel1l2	intron	ENSMUSG00000074764	ProperStrand	15	1	-14.7792
chr5	89707811	89707827	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-9.8210
chr17	39846526	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	176977781	176977818	LTR	IAPEz-int	ERVK	chr1IAPEz-int176974789	NonProperStrand	1	1	-inf
chr17	39847611	39847675	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	135028381	135028455	protein_coding	Zfp646	intron	ENSMUSG00000049739	ProperStrand	5	1	-3.2379
chr17	39846453	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	96165873	96165970	SINE	B1_Mus1	Alu	chr8B1_Mus196165878	ProperStrand	1	1	-inf
chr6	115807116	115807145	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	chr1	10112130	10112202	protein_coding	Cspp1	intron	ENSMUSG00000056763	ProperStrand	46	1	-11.3772
chr6	13908120	13908169	lincRNA	1110019D14Rik	intron	ENSMUSG00000084931	ProperStrand	28	chr12	57431701	57431790	protein_coding	Mbip	intron	ENSMUSG00000021028	NonProperStrand	9	1	-17.5044
chr9	123461957	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	122814307	122814387	protein_coding	Vps29	utr3	ENSMUSG00000029462	NonProperStrand	18	1	-3.2529
chr2	10426273	10426363	miRNA	AL772216.21	.	ENSMUSG00000080550	ProperStrand	1	chr2	10426368	10426468	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-inf
chr6	85438854	85438872	protein_coding	Fbxo41	intron	ENSMUSG00000047013	ProperStrand	11	chr2	167464127	167464201	protein_coding	Gm20431	intron	ENSMUSG00000089739	NonProperStrand	53	1	-15.7334
chr17	39847440	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	145022600	145022618	processed_transcript	Gm13227	.	ENSMUSG00000085101	ProperStrand	1	1	-inf
chr17	39846759	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	67474850	67474920	SINE	B4A	B4	chr9B4A67474773	ProperStrand	1	1	-inf
chr2	90395133	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	chr7	141104116	141104271	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-7.5165
chr17	39847060	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	175607846	175614857	protein_coding	Pydc3	exon	ENSMUSG00000066677	NonProperStrand	23	3	-4.6074
chr3	133472870	133472916	LTR	RLTR9B	ERVK	chr3RLTR9B133472710	NonProperStrand	1	chr12	67667898	67668011	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-inf
chr13	6594464	6594522	protein_coding-noncoding	Pfkp	utr3	ENSMUSG00000021196	ProperStrand	115	chr6	71882583	71882666	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-9.1963
chr17	39846452	39846479	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	98490649	98490666	protein_coding	Mrps22	intron	ENSMUSG00000032459	NonProperStrand	1	1	-inf
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr1	183291371	183291421	protein_coding	Cnih3	intron	ENSMUSG00000026514	ProperStrand	26	1	-14.0868
chr6	140550778	140550831	LTR	RLTR42-int	ERVK	chr6RLTR42-int140550695	NonProperStrand	1	chr4	129514910	129515003	protein_coding	Ptp4a2	intron	ENSMUSG00000028788	ProperStrand	78	1	-inf
chr13	17790139	17790239	protein_coding	2810021B07Rik	utr3	ENSMUSG00000012429	NonProperStrand	2	chr11	19987600	19987690	protein_coding	Actr2	intron	ENSMUSG00000020152	NonProperStrand	187	1	-17.2167
chr17	39845440	39845553	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr11	117203598	117203617	protein_coding	Sept9	intron	ENSMUSG00000059248	NonProperStrand	10	1	-5.6150
chr1	172304832	172304916	protein_coding-noncoding	Nos1ap	utr3	ENSMUSG00000038473	NonProperStrand	1	chr19	8995979	8996031	protein_coding	B3gat3	intron	ENSMUSG00000071649	ProperStrand	33	1	-inf
chr17	39847641	39847695	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	120563651	120563703	LTR	MLT1B	MaLR	chr8MLT1B120563640	ProperStrand	1	1	-inf
chr12	108916854	108916954	LINE	L1MB2	L1	chr12L1MB2108916880	NonProperStrand	2	chr12	108916690	108916780	SINE	B4A	B4	chr12B4A108916540	NonProperStrand	3	1	-20.8297
chr17	39847174	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	97416032	97416109	Other	RMER1C	Other	chr5RMER1C97415525	NonProperStrand	4	1	-4.8204
chr11	16754830	16754848	protein_coding	Egfr	intron	ENSMUSG00000020122	NonProperStrand	23	chr5	36673001	36673105	protein_coding	Sorcs2	intron	ENSMUSG00000029093	ProperStrand	194	1	-11.6096
chr9	110281291	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	chr12	102644910	102644974	protein_coding	Catsperb	intron	ENSMUSG00000047014	NonProperStrand	505	1	-3.4477
chr2	102829380	102829459	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr11	116010049	116010255	protein_coding	Fbf1	intron	ENSMUSG00000020776	ProperStrand	74	1	-9.4541
chr3	107320067	107320167	protein_coding-noncoding	Slc6a17	utr3	ENSMUSG00000027894	ProperStrand	3	chr3	107320192	107320282	protein_coding	Slc6a17	utr5	ENSMUSG00000027894	ProperStrand	46	2	-inf
chr17	25723764	25724051	protein_coding-noncoding	Lmf1	utr5	ENSMUSG00000002279	NonProperStrand	21	chr17	25722713	25722868	protein_coding	Lmf1	exon	ENSMUSG00000002279	NonProperStrand	51	1	-14.4828
chr7	7814395	7814485	LINE	L1Md_F2	L1	chr7L1Md_F27814363	ProperStrand	1	chr7	7814276	7814376	LINE	Lx2	L1	chr7Lx27813114	ProperStrand	1	1	-inf
chr11	88928787	88928866	lincRNA	A930013B10Rik	exon	ENSMUSG00000063109	NonProperStrand	2	chr9	123462110	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr9	37655071	37657076	LINE	L1_Mur3	L1	chr9L1_Mur337655914	ProperStrand	4	chr9	37657072	37657162	LINE	L1_Mur3	L1	chr9L1_Mur337656746	ProperStrand	4	4	-inf
chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	131	chr5	107903725	107903812	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	131	1	-8.8897
chr10	57505239	57505329	protein_coding	Fabp7	intron	ENSMUSG00000019874	ProperStrand	1	chr9	123461923	123462023	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr8	80730192	80733734	LTR	RLTR28	ERVL	chr8RLTR2880733685	ProperStrand	4	chr7	127273091	127273149	protein_coding	Zp2	intron	ENSMUSG00000030911	ProperStrand	28	2	-inf
chr17	39846415	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	25868887	25870131	Simple_repeat	(GGGA)n	Simple_repeat	chr14(GGGA)n25870066	ProperStrand	1	1	-inf
chr10	128677521	128677611	LINE	L1_Mm	L1	chr10L1_Mm128676176	NonProperStrand	3	chr10	128677403	128677503	LINE	L1_Mm	L1	chr10L1_Mm128676176	ProperStrand	3	3	-inf
chr19	40244345	40244427	protein_coding	Cyp2c70	intron	ENSMUSG00000060613	ProperStrand	17	chr10	63244937	63244986	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-12.3032
chr17	39847989	39848022	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	76904089	76904305	SINE	B1_Mus2	Alu	chr15B1_Mus276904018	NonProperStrand	2	1	-5.4040
chr17	39847675	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	52	chr7	134925954	134926067	protein_coding	Setd1a	intron	ENSMUSG00000042308	NonProperStrand	2	1	-19.7460
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr6	128227451	128227512	protein_coding	Tead4	intron	ENSMUSG00000030353	ProperStrand	34	1	-9.0185
chr15	77917737	77917837	protein_coding	Cacng2	intron	ENSMUSG00000019146	ProperStrand	169	chr4	16960453	16960471	pseudogene	Gm11848	.	ENSMUSG00000082994	ProperStrand	1	1	-inf
chr2	156391556	156391632	protein_coding	0610011L14Rik	intron	ENSMUSG00000027628	NonProperStrand	56	chr19	38969161	38969244	protein_coding	Tbc1d12	intron	ENSMUSG00000048720	ProperStrand	51	1	-12.4898
chr5	32494314	32494392	LTR	RLTR21	ERVK	chr5RLTR2132494268	NonProperStrand	1	chr13	104025067	104025120	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	141	1	-inf
chr17	4082932	4082972	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr3	91106308	91106412	LTR	RMER12	ERVK	chr3RMER1291106102	NonProperStrand	1	1	-inf
chr2	59987451	59987512	protein_coding	Baz2b	intron	ENSMUSG00000026987	ProperStrand	70	chr6	85622675	85622727	protein_coding	Alms1	intron	ENSMUSG00000063810	ProperStrand	47	1	-12.2056
chr2	101185694	101185710	LINE	L1Md_T	L1	chr2L1Md_T101184397	ProperStrand	1	chr12	16572960	16572986	protein_coding	Lpin1	intron	ENSMUSG00000020593	ProperStrand	65	1	-inf
chr19	30160580	30160680	protein_coding-noncoding	Uhrf2	utr5	ENSMUSG00000024817	NonProperStrand	6	chr1	39368241	39370089	protein_coding	Npas2	intron	ENSMUSG00000026077	NonProperStrand	32	2	-21.8115
chr17	87672731	87678222	LINE	Lx9	L1	chr17Lx987672658	ProperStrand	8	chr17	87678223	87678323	lincRNA	4833418N02Rik	intron	ENSMUSG00000085287	NonProperStrand	13	4	-inf
chr7	137457666	137457734	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	417	chr9	15326408	15326454	protein_coding	BC017612	intron	ENSMUSG00000058173	NonProperStrand	56	1	-8.2825
chr13	97190562	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr16	84776439	84776528	protein_coding	Jam2	intron	ENSMUSG00000053062	ProperStrand	120	1	-3.8026
chr11	12292631	12292724	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr13	43192905	43192932	protein_coding	Phactr1	intron	ENSMUSG00000054728	ProperStrand	38	1	-9.9664
chr18	65587468	65587568	SINE	B2_Mm2	B2	chr18B2_Mm265587481	ProperStrand	4	chr18	65587345	65587435	misc_RNA	AC102240.1	.	ENSMUSG00000093283	ProperStrand	5	2	-inf
chr17	56953793	56953856	protein_coding	Rfx2	intron	ENSMUSG00000024206	ProperStrand	21	chr2	160695761	160695837	sense_intronic	Gm16751	.	ENSMUSG00000085303	NonProperStrand	12	1	-17.4057
chr7	102268387	102268487	DNA	Tigger9b	MER2_type	chr7Tigger9b102268244	NonProperStrand	5	chr7	102437020	102437110	LINE	L1Md_A	L1	chr7L1Md_A102434211	ProperStrand	5	1	-inf
chr19	5802191	5802223	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr15	92352792	92352845	protein_coding	Pdzrn4	intron	ENSMUSG00000036218	ProperStrand	35	1	-5.4844
chr9	123461831	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	118760546	118760636	protein_coding	Dpyd	intron	ENSMUSG00000033308	ProperStrand	20	1	-3.0591
chr9	51057124	51057140	LINE	Lx8	L1	chr9Lx851056212	NonProperStrand	1	chr5	3619660	3619790	protein_coding	Pex1	intron	ENSMUSG00000005907	ProperStrand	26	1	-inf
chr14	56722542	56722624	LINE	L1M5	L1	chr14L1M556722326	NonProperStrand	1	chr17	39843500	39843567	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39847443	39847553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	123066660	123066681	SINE	B2_Mm1a	B2	chr9B2_Mm1a123066554	NonProperStrand	2	1	-5.4040
chrX	73782035	73782073	LINE	Lx2	L1	chrXLx273781512	NonProperStrand	4	chr9	118674952	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-11.6123
chr17	50420126	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr15	100064320	100064367	protein_coding	Atf1	intron	ENSMUSG00000023027	ProperStrand	30	1	-11.3449
chr13	44743665	44743790	Simple_repeat	(GGAA)n	Simple_repeat	chr13(GGAA)n44743683	ProperStrand	5	chr12	38861381	38865556	protein_coding	Dgkb	intron	ENSMUSG00000036095	NonProperStrand	29	2	-21.0111
chr8	33844593	33844623	LINE	Lx8	L1	chr8Lx833844376	NonProperStrand	5	chr17	39847207	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr1	33450248	33450336	LINE	Lx8	L1	chr1Lx833449638	NonProperStrand	1	chr17	39846353	39846402	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr16	14185817	14185834	protein_coding	Nde1	exon	ENSMUSG00000022678	ProperStrand	37	chr12	3437546	3437622	protein_coding	Asxl2	intron	ENSMUSG00000037486	ProperStrand	73	1	-12.6060
chr11	12440228	12440328	LINE	L1MB3	L1	chr11L1MB312440084	ProperStrand	1	chr17	39847182	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr2	156617886	156617976	LTR	MYSERV-int	ERVK	chr2MYSERV-int156616975	ProperStrand	5	chr2	156617976	156618076	LTR	MYSERV-int	ERVK	chr2MYSERV-int156617904	ProperStrand	3	3	-inf
chr19	4762672	4762715	protein_coding	Rbm4b	intron	ENSMUSG00000033760	NonProperStrand	33	chr9	78552549	78552650	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	3	-19.2177
chr5	136554953	136555043	SINE	B1_Mus1	Alu	chr5B1_Mus1136554963	NonProperStrand	1	chr5	136554813	136554913	SINE	B2_Mm1a	B2	chr5B2_Mm1a136554764	NonProperStrand	1	1	-inf
chr8	108203320	108203421	protein_coding-noncoding	Ctcf	utr5	ENSMUSG00000005698	NonProperStrand	1	chr8	3396349	3396382	protein_coding	Arhgef18	intron	ENSMUSG00000004568	ProperStrand	170	1	-inf
chr13	44869629	44869661	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr10	89452437	89452459	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	132	1	-3.0308
chr17	39846003	39846110	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	2	-3.1789
chr14	77083048	77083113	LINE	Lx8	L1	chr14Lx877082984	NonProperStrand	2	chr14	77083572	77083627	LTR	ORR1A4	MaLR	chr14ORR1A477083561	ProperStrand	2	2	-inf
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr11	17221286	17221340	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	33	1	-9.0788
chr10	40258588	40258678	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr13	49207565	49207665	protein_coding	Wnk2	intron	ENSMUSG00000037989	ProperStrand	19	1	-7.6479
chr17	39845918	39846050	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr9	108984724	108984740	protein_coding	Ccdc72	exon	ENSMUSG00000091537	ProperStrand	1	1	-inf
chr10	96925717	96925807	LINE	Lx9	L1	chr10Lx996925545	NonProperStrand	1	chr10	96926070	96926170	LINE	Lx9	L1	chr10Lx996925846	ProperStrand	1	1	-inf
chr7	126192821	126192887	DNA	MER58A	MER1_type	chr7MER58A126192830	NonProperStrand	1	chr13	97190563	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr15	66026380	66026470	protein_coding	Kcnq3	intron	ENSMUSG00000056258	NonProperStrand	30	chr15	66006616	66006716	protein_coding	Kcnq3	intron	ENSMUSG00000056258	ProperStrand	12	1	-16.6978
chr19	5796321	5796411	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr12	70829464	70829564	protein_coding	Atp5s	intron	ENSMUSG00000054894	ProperStrand	13	5	-inf
chr15	13618418	13618508	LINE	L1Md_T	L1	chr15L1Md_T13617463	ProperStrand	1	chr15	85960951	85961051	protein_coding	Gramd4	exon	ENSMUSG00000035900	NonProperStrand	29	1	-inf
chr12	102606842	102606911	LTR	IAPEz-int	ERVK	chr12IAPEz-int102606426	ProperStrand	1	chr6	3201470	3201526	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr17	33909454	33909557	LINE	L1ME2z	L1	chr17L1ME2z33909444	NonProperStrand	3	chr17	33909321	33909411	SINE	ID_B1	B4	chr17ID_B133909302	NonProperStrand	3	3	-inf
chr2	22744858	22744901	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	41829343	41829439	LINE	L1Md_A	L1	chr6L1Md_A41823050	ProperStrand	1	1	-inf
chr9	57552183	57552244	Other	RMER1B	Other	chr9RMER1B57552065	ProperStrand	2	chr9	57547753	57550759	protein_coding	Cyp1a1	intron	ENSMUSG00000032315	NonProperStrand	9	2	-inf
chr4	95609741	95609867	LINE	L1M2	L1	chr4L1M295609749	ProperStrand	1	chr17	39847440	39847460	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr3	40978536	40978562	LINE	L1_Mus3	L1	chr3L1_Mus340978332	ProperStrand	1	chr7	34202365	34202394	LTR	MMETn-int	ERVK	chr7MMETn-int34202121	ProperStrand	20	1	-inf
chr18	20710279	20710315	SINE	ID_B1	B4	chr18ID_B120710146	ProperStrand	2	chr18	20716792	20716911	protein_coding	Dsg2	intron	ENSMUSG00000044393	NonProperStrand	42	2	-inf
chr11	119784653	119784743	LTR	ORR1E	MaLR	chr11ORR1E119784624	ProperStrand	4	chr11	119784746	119784846	LTR	ORR1E	MaLR	chr11ORR1E119784760	ProperStrand	4	3	-inf
chr7	89298051	89298111	LINE	L1Md_F2	L1	chr7L1Md_F289292752	ProperStrand	5	chr17	39843822	39848099	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-7.9392
chr17	39848480	39848516	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr13	22035881	22035932	antisense	Gm11280	.	ENSMUSG00000085393	NonProperStrand	6	1	-6.0469
chr3	105982022	105982141	protein_coding	Chi3l3	intron	ENSMUSG00000040809	NonProperStrand	47	chr1	46246105	46246131	protein_coding	Dnahc7b	intron	ENSMUSG00000041144	ProperStrand	8	1	-16.6700
chr6	147081597	147081681	LTR	MMERVK10C-int	ERVK	chr6MMERVK10C-int147080724	ProperStrand	1	chr16	33478106	33478166	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	133	1	-inf
chr9	107791876	107791919	protein_coding	Mon1a	intron	ENSMUSG00000032583	NonProperStrand	7	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.3618
chr17	39846750	39846809	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	122416973	122417045	LTR	RLTR4_MM-int	ERV1	chr8RLTR4_MM-int122414161	NonProperStrand	4	1	-3.6552
chr8	85037684	85037723	LINE	L1Md_F	L1	chr8L1Md_F85034381	ProperStrand	16	chr8	85040642	85040710	LTR	ORR1C2	MaLR	chr8ORR1C285040652	NonProperStrand	1	1	-inf
chr10	77989595	77989636	LINE	Lx6	L1	chr10Lx677989130	ProperStrand	9	chr17	39847735	39847786	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	3	-6.2462
chr10	76892605	76961786	LINE	L1M5	L1	chr10L1M576892578	ProperStrand	7	chr10	76825905	76892569	protein_coding	Adarb1	intron	ENSMUSG00000020262	ProperStrand	178	6	-inf
chr11	114881843	114881909	SINE	B4	B4	chr11B4114881624	ProperStrand	1	chr11	114884844	114884900	protein_coding	Gm11710	intron	ENSMUSG00000069609	NonProperStrand	2	1	-inf
chr15	88361216	88361316	LTR	MTE-int	MaLR	chr15MTE-int88360709	NonProperStrand	1	chr5	128917307	128917397	protein_coding	Tmem132d	intron	ENSMUSG00000034310	NonProperStrand	25	1	-inf
chr9	123462016	123462043	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	146557252	146557269	protein_coding	Tm7sf3	intron	ENSMUSG00000040234	NonProperStrand	11	1	-4.1956
chr2	179587674	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr8	107059681	107059761	protein_coding	Car7	intron	ENSMUSG00000031883	ProperStrand	12	1	-13.8825
chr6	32972424	32972501	protein_coding	Chchd3	intron	ENSMUSG00000053768	ProperStrand	204	chr2	158356445	158356512	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-8.1166
chr16	26232384	26232484	SINE	MIRb	MIR	chr16MIRb26232335	NonProperStrand	1	chr16	26586883	26586973	protein_coding	Il1rap	intron	ENSMUSG00000022514	NonProperStrand	5	1	-inf
chr9	61383029	61383119	LTR	MTC	MaLR	chr9MTC61382819	NonProperStrand	8	chr9	61383133	61383233	SINE	B1_Mus2	Alu	chr9B1_Mus261383158	NonProperStrand	2	2	-inf
chr11	51631308	51631376	protein_coding	Phf15	intron	ENSMUSG00000020387	ProperStrand	71	chr5	132442412	132442490	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-6.8731
chr4	94991611	94991631	SINE	B4A	B4	chr4B4A94991540	NonProperStrand	1	chr9	123461882	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	54516553	54516577	LINE	Lx3C	L1	chr14Lx3C54516154	NonProperStrand	1	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr5	104436416	104437658	protein_coding	Hsd17b11	intron	ENSMUSG00000029311	NonProperStrand	34	chr12	86024011	86024067	protein_coding	Tmem90a	intron	ENSMUSG00000071234	NonProperStrand	27	1	-14.7914
chr10	17748245	17748345	LINE	L1Md_F2	L1	chr10L1Md_F217747615	NonProperStrand	1	chr10	17748510	17748600	LINE	L1Md_F2	L1	chr10L1Md_F217748270	NonProperStrand	1	1	-inf
chr13	29409191	29409228	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr4	95704545	95704639	protein_coding	Cyp2j13	intron	ENSMUSG00000028571	NonProperStrand	17	1	-10.5027
chrX	96167424	96167503	LINE	L1M4	L1	chrXL1M496166872	NonProperStrand	2	chr17	39847284	39847332	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr3	103341203	103341289	LTR	MT2A	ERVL	chr3MT2A103341112	ProperStrand	1	chr16	10213274	10213327	protein_coding-noncoding	Atf7ip2	utr5	ENSMUSG00000039200	ProperStrand	1	1	-inf
chr6	5138607	5138695	protein_coding	Pon1	intron	ENSMUSG00000002588	NonProperStrand	23	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.8860
chr2	26006575	26007802	SINE	B1_Mus1	Alu	chr2B1_Mus126007639	ProperStrand	5	chr2	26005362	26006555	Simple_repeat	(GGAA)n	Simple_repeat	chr2(GGAA)n26005268	NonProperStrand	4	4	-inf
chr16	4539713	4539813	protein_coding	Srl	intron	ENSMUSG00000022519	ProperStrand	96	chr1	74159939	74160029	protein_coding	Tns1	intron	ENSMUSG00000055322	ProperStrand	77	1	-10.5762
chr11	97952936	97952962	protein_coding-noncoding	Fbxl20	utr3	ENSMUSG00000020883	NonProperStrand	1	chrX	157220705	157220781	protein_coding	Rs1	intron	ENSMUSG00000031293	NonProperStrand	1	1	-inf
chr4	130724069	130724121	LTR	MTE2b	MaLR	chr4MTE2b130724036	NonProperStrand	1	chr4	130723970	130724047	LTR	ORR1B1	MaLR	chr4ORR1B1130723718	NonProperStrand	2	1	-inf
chr2	53329823	53329923	LINE	Lx	L1	chr2Lx53329813	ProperStrand	1	chr7	47188512	47188602	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	36	1	-inf
chr1	52650188	52650264	LTR	IAPEz-int	ERVK	chr1IAPEz-int52648276	ProperStrand	6	chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	1	-15.3680
chr13	23576214	23576242	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	chrX	134343840	134343890	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	151	1	-11.0917
chr17	39846353	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	163893904	163893994	protein_coding	Tomm34	intron	ENSMUSG00000018322	ProperStrand	1	1	-inf
chr16	8781909	8781966	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr2	115601998	115602098	protein_coding	BC052040	intron	ENSMUSG00000040282	ProperStrand	31	1	-9.9954
chr3	41217880	41217980	LINE	Lx9	L1	chr3Lx941217804	ProperStrand	1	chr3	41218163	41218253	LTR	MLT1C	MaLR	chr3MLT1C41218172	NonProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr1	179137354	179137372	protein_coding	Akt3	intron	ENSMUSG00000019699	NonProperStrand	9	1	-13.6981
chr3	63993850	63993896	LINE	L1_Mm	L1	chr3L1_Mm63993772	NonProperStrand	2	chr9	123461881	123461966	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr6	38496351	38496420	SINE	B2_Mm1t	B2	chr6B2_Mm1t38496272	NonProperStrand	1	chr3	27522096	27522129	protein_coding	Fndc3b	intron	ENSMUSG00000039286	ProperStrand	140	1	-inf
chr17	70963685	70963759	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chrX	131106115	131106136	protein_coding	Btk	intron	ENSMUSG00000031264	ProperStrand	7	1	-10.6034
chr19	6353793	6353893	protein_coding	Map4k2	utr3	ENSMUSG00000024948	ProperStrand	14	chr8	71023804	71023894	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	NonProperStrand	45	1	-15.5562
chr17	63552878	63552896	protein_coding	Fbxl17	intron	ENSMUSG00000023965	ProperStrand	37	chr14	56488567	56488651	protein_coding	Nynrin	intron	ENSMUSG00000075592	ProperStrand	13	1	-16.1484
chr19	7274829	7274929	protein_coding-noncoding	Otub1	utr3	ENSMUSG00000024767	ProperStrand	1	chr19	7275101	7275191	protein_coding	Otub1	intron	ENSMUSG00000024767	ProperStrand	36	1	-inf
chr6	104016885	104016902	LINE	L1Md_T	L1	chr6L1Md_T104014464	NonProperStrand	1	chr9	58455837	58455939	protein_coding	Nptn	intron	ENSMUSG00000032336	ProperStrand	68	1	-inf
chr2	27539831	27539857	protein_coding	Rxra	intron	ENSMUSG00000015846	NonProperStrand	11	chr10	81119608	81119715	protein_coding	Gm10778	intron	ENSMUSG00000074860	ProperStrand	46	1	-16.0352
chr18	36801888	36801954	protein_coding	Ankhd1	intron	ENSMUSG00000024483	ProperStrand	61	chr6	31139381	31139434	protein_coding	AB041803	intron	ENSMUSG00000044471	ProperStrand	114	1	-10.6998
chr8	78692248	78692329	LINE	L1Md_F3	L1	chr8L1Md_F378687785	NonProperStrand	2	chr17	39847689	39847750	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr4	83569679	83569723	DNA	MMAR1	Mariner	chr4MMAR183569563	NonProperStrand	1	chr17	39846756	39846790	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847221	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	45094169	45094187	pseudogene	Gm12161	.	ENSMUSG00000080981	NonProperStrand	1	1	-inf
chr2	90777848	90779203	LTR	RLTR33	ERVK	chr2RLTR3390777617	ProperStrand	10	chr9	123461963	123461988	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr17	39847952	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	41226312	41227270	LTR	RLTR9F	ERVK	chr4RLTR9F41227133	ProperStrand	3	1	-4.3512
chr7	19768489	19768579	protein_coding	Eml2	intron	ENSMUSG00000040811	NonProperStrand	11	chr2	28854281	28854381	protein_coding	1700101E01Rik	intron	ENSMUSG00000079502	ProperStrand	41	1	-16.2906
chr17	39846582	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	34757365	34757420	protein_coding	Phf19	intron	ENSMUSG00000026873	ProperStrand	2	1	-5.3533
chr3	96558449	96558913	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	78	chr9	20911762	20911805	protein_coding	Tyk2	intron	ENSMUSG00000032175	ProperStrand	108	1	-10.3141
chr16	91015322	91015460	protein_coding	Gcfc1	intron	ENSMUSG00000022974	ProperStrand	18	chr1	152837182	152837198	protein_coding	Hmcn1	intron	ENSMUSG00000066842	NonProperStrand	30	1	-15.8742
chr5	36817650	36818498	protein_coding	Tada2b	utr3	ENSMUSG00000029196	ProperStrand	2	chr5	36810399	36812959	protein_coding	Grpel1	intron	ENSMUSG00000029198	NonProperStrand	8	1	-23.4058
chr18	65647530	65647609	LINE	L1_Mur3	L1	chr18L1_Mur365647498	NonProperStrand	1	chr16	35981617	35981641	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-inf
chr12	79285489	79285579	SINE	B3	B2	chr12B379285405	ProperStrand	1	chr12	79284163	79285322	SINE	RSINE1	B4	chr12RSINE179285221	NonProperStrand	1	1	-inf
chr17	39846621	39846722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	28169809	28178959	protein_coding	Spnb4	intron	ENSMUSG00000011751	ProperStrand	12	2	-3.1058
chr17	39846759	39846814	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	16374106	16374208	SINE	MIRc	MIR	chr5MIRc16374117	ProperStrand	1	1	-inf
chr15	64241653	64241698	LTR	ORR1D2	MaLR	chr15ORR1D264241503	NonProperStrand	1	chr6	49263202	49263298	LTR	RMER16-int	ERVK	chr6RMER16-int49263089	NonProperStrand	9	1	-inf
chr17	39847866	39848009	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	33032390	33231325	protein_coding	Pgcp	intron	ENSMUSG00000039007	ProperStrand	10	3	-5.7899
chr5	146261022	146261042	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	59227390	59227470	protein_coding	Snap47	intron	ENSMUSG00000009894	ProperStrand	12	1	-8.2893
chr19	5797395	5797450	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr7	25337971	25338444	protein_coding	Xrcc1	intron	ENSMUSG00000051768	ProperStrand	67	1	-4.2292
chr1	58017309	58017355	protein_coding-noncoding	Kctd18	utr3	ENSMUSG00000054770	NonProperStrand	9	chr2	20718278	20718308	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-12.5307
chrX	7865125	7865225	LTR	MYSERV16_I-int	ERVK	chrXMYSERV16_I-int7865118	ProperStrand	4	chrX	7864955	7865045	LTR	RLTR11B	ERVK	chrXRLTR11B7864956	ProperStrand	4	4	-inf
chr7	34985348	34985387	LINE	L1Md_T	L1	chr7L1Md_T34983877	NonProperStrand	5	chr7	34992799	34992848	protein_coding	Gpi1	intron	ENSMUSG00000036427	NonProperStrand	43	1	-18.0374
chr7	77610953	77611043	LTR	MTC	MaLR	chr7MTC77610739	ProperStrand	1	chr7	77610503	77610603	SINE	B4A	B4	chr7B4A77610487	NonProperStrand	1	1	-inf
chr14	55746179	55746243	SINE	MIRb	MIR	chr14MIRb55746183	ProperStrand	4	chr6	30099739	30099771	protein_coding	Nrf1	intron	ENSMUSG00000058440	ProperStrand	52	1	-18.1476
chr10	78403552	78404982	LINE	L1Md_T	L1	chr10L1Md_T78403281	NonProperStrand	34	chr15	76637780	76637880	protein_coding	Arhgap39	intron	ENSMUSG00000033697	ProperStrand	98	1	-12.1839
chr12	110692234	110692266	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	chr2	122123772	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-5.8325
chr10	25382019	25382153	LTR	ORR1B1	MaLR	chr10ORR1B125381772	ProperStrand	3	chr17	39847715	39847737	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	2	-8.1061
chr15	59516398	59516498	LTR	MTEb	MaLR	chr15MTEb59516380	NonProperStrand	2	chr15	59516277	59516367	Simple_repeat	(GA)n	Simple_repeat	chr15(GA)n59516300	ProperStrand	2	2	-inf
chr1	136364891	136364965	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	chr5	122919645	122919697	protein_coding	Atp2a2	exon	ENSMUSG00000029467	ProperStrand	38	1	-11.3011
chr17	86097305	86097350	LTR	MLT1I	MaLR	chr17MLT1I86097243	NonProperStrand	1	chr4	150472822	150472928	protein_coding	Camta1	intron	ENSMUSG00000014592	NonProperStrand	401	1	-inf
chr9	7930100	7930190	SINE	B3A	B2	chr9B3A7930102	NonProperStrand	2	chr9	7929939	7930039	SINE	PB1	Alu	chr9PB17929907	ProperStrand	2	2	-inf
chr7	12930796	12930870	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr17	39843358	39843546	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	2	-3.7503
chr7	58257648	58257737	LINE	L1Md_F2	L1	chr7L1Md_F258257602	NonProperStrand	1	chr7	58257045	58257145	LTR	RMER19A	ERVK	chr7RMER19A58256871	NonProperStrand	1	1	-inf
chr8	82048541	82048631	LINE	L1MA6	L1	chr8L1MA682048545	ProperStrand	1	chr8	82048727	82048827	SINE	B3A	B2	chr8B3A82048682	ProperStrand	1	1	-inf
chr17	39848704	39848830	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	130714625	130714653	LINE	Lx8	L1	chr1Lx8130714037	ProperStrand	1	1	-inf
chr3	10433503	10433532	protein_coding	Snx16	intron	ENSMUSG00000027534	ProperStrand	8	chr1	131573794	131573813	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-13.1034
chr6	120857148	120857250	protein_coding-noncoding	Bid	utr3	ENSMUSG00000004446	NonProperStrand	6	chr6	120857231	120857418	protein_coding	Bid	utr5	ENSMUSG00000004446	NonProperStrand	22	6	-inf
chr17	53495243	53495342	LINE	L1VL2	L1	chr17L1VL253494544	ProperStrand	1	chr9	118674951	118675011	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr17	39846822	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	136813998	136814117	SINE	ID_B1	B4	chr6ID_B1136814007	ProperStrand	2	1	-5.3533
chr17	31341774	31341858	LINE	L1ME1	L1	chr17L1ME131341775	NonProperStrand	1	chr17	31342255	31342281	Simple_repeat	(TTTTTG)n	Simple_repeat	chr17(TTTTTG)n31342211	ProperStrand	1	1	-inf
chr17	39847337	39847655	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	36068847	36068955	LTR	RMER17C	ERVK	chr1RMER17C36068748	NonProperStrand	12	2	-3.1700
chr16	92444696	92444780	protein_coding	Rcan1	intron	ENSMUSG00000022951	ProperStrand	210	chr17	29041287	29041398	protein_coding	4930539E08Rik	intron	ENSMUSG00000048905	NonProperStrand	52	1	-9.7986
chr4	132309940	132310018	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr16	20685570	20685877	protein_coding	Eif4g1	intron	ENSMUSG00000045983	ProperStrand	123	1	-8.2847
chr11	26561114	26561214	LTR	RLTR31_Mm	ERVK	chr11RLTR31_Mm26560960	ProperStrand	1	chr1	25332819	25332909	protein_coding	Bai3	intron	ENSMUSG00000033569	ProperStrand	36	1	-inf
chr5	65338475	65338575	LINE	L1M4	L1	chr5L1M465338299	NonProperStrand	2	chr5	65338229	65338320	SINE	RSINE1	B4	chr5RSINE165338160	NonProperStrand	2	2	-inf
chr5	74343775	74343865	SINE	B1_Mur3	Alu	chr5B1_Mur374343779	ProperStrand	2	chr5	74343674	74343774	Simple_repeat	(TTGG)n	Simple_repeat	chr5(TTGG)n74343525	NonProperStrand	2	2	-inf
chr16	96060962	96061018	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	ProperStrand	119	chr3	88714402	88714489	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	66	2	-16.4591
chr17	39847163	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	110105210	110105229	protein_coding	5430403G16Rik	exon	ENSMUSG00000072763	NonProperStrand	10	2	-5.2538
chr14	99142888	99142932	LINE	Lx5	L1	chr14Lx599142687	ProperStrand	1	chr2	5379266	5379336	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr16	23060382	23060399	protein_coding	Kng1	intron	ENSMUSG00000022875	NonProperStrand	3	chr7	141211666	141211774	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	2	-inf
chr6	87628800	87628874	lincRNA	E230015B07Rik	intron	ENSMUSG00000071332	ProperStrand	1	chr18	88875332	88875375	protein_coding	Socs6	intron	ENSMUSG00000056153	ProperStrand	33	1	-inf
chr10	36882642	36882739	LTR	MLT1H	MaLR	chr10MLT1H36882648	ProperStrand	1	chr10	36882170	36882219	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n36882096	NonProperStrand	1	1	-inf
chr11	64565902	64566002	LTR	ORR1D2	MaLR	chr11ORR1D264565900	ProperStrand	1	chr11	64565749	64565839	SINE	B4A	B4	chr11B4A64565552	ProperStrand	1	1	-inf
chr3	136705394	136705495	LINE	Lx8	L1	chr3Lx8136704975	NonProperStrand	2	chr13	73942177	73942236	protein_coding	Slc12a7	intron	ENSMUSG00000017756	ProperStrand	9	2	-inf
chr1	171503046	171503138	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr4	24602407	24602472	protein_coding-noncoding	Klhl32	utr3	ENSMUSG00000040387	NonProperStrand	2	1	-19.9529
chr4	127991789	127991879	protein_coding	Csmd2	intron	ENSMUSG00000028804	NonProperStrand	11	chr18	13083116	13083216	protein_coding	Osbpl1a	intron	ENSMUSG00000044252	ProperStrand	48	1	-15.9247
chr3	49785910	49786010	LTR	RLTR13D5	ERVK	chr3RLTR13D549785399	ProperStrand	1	chr11	53601863	53601952	protein_coding	Gm12216	intron	ENSMUSG00000081769	NonProperStrand	5	1	-inf
chr15	77187832	77187867	SINE	MIRb	MIR	chr15MIRb77187716	NonProperStrand	1	chr8	124938154	124938234	protein_coding	Zc3h18	intron	ENSMUSG00000017478	NonProperStrand	139	1	-inf
chr9	21073150	21073392	protein_coding	Atg4d	intron	ENSMUSG00000002820	NonProperStrand	28	chr12	78350931	78351031	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-7.4128
chr7	80198754	80212847	LTR	MTD	MaLR	chr7MTD80212538	ProperStrand	2	chr9	123461813	123461865	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr4	155495145	155495293	protein_coding	9430015G10Rik	intron	ENSMUSG00000059939	ProperStrand	31	1	-9.1762
chr5	136553328	136553365	SINE	B1F2	Alu	chr5B1F2136553238	NonProperStrand	1	chr5	136555311	136555354	SINE	B4A	B4	chr5B4A136555310	ProperStrand	1	1	-inf
chr3	28107499	28107599	LINE	Lx7	L1	chr3Lx728106791	NonProperStrand	1	chr3	28107917	28108007	LINE	Lx7	L1	chr3Lx728107919	NonProperStrand	1	1	-inf
chr14	50466168	50466204	LINE	L1Md_F2	L1	chr14L1Md_F250464365	NonProperStrand	3	chr17	39847636	39847704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr1	16102763	16102805	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	77	chr9	87067839	87067891	protein_coding	Mrap2	intron	ENSMUSG00000042761	ProperStrand	12	2	-inf
chr17	39847440	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	25222774	25222829	SINE	B1_Mm	Alu	chr2B1_Mm25222725	NonProperStrand	7	2	-4.7560
chr16	17948594	17948694	LTR	ORR1A2	MaLR	chr16ORR1A217948360	ProperStrand	1	chr16	17948688	17948778	LTR	RLTR11A	ERVK	chr16RLTR11A17948678	ProperStrand	1	1	-inf
chr1	119590788	119590885	LINE	L1_Mus1	L1	chr1L1_Mus1119589661	NonProperStrand	3	chr1	119590976	119591022	LINE	L1_Mus2	L1	chr1L1_Mus2119590968	NonProperStrand	1	1	-inf
chr5	144100575	144100665	SINE	ID_B1	B4	chr5ID_B1144100594	NonProperStrand	1	chr5	144100656	144100756	SINE	PB1D10	Alu	chr5PB1D10144100644	NonProperStrand	1	1	-inf
chr1	12858115	12858184	protein_coding	Slco5a1	utr3	ENSMUSG00000025938	NonProperStrand	4	chr6	49086158	49086209	protein_coding	Igf2bp3	intron	ENSMUSG00000029814	ProperStrand	101	1	-16.6698
chr17	39847848	39847968	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	25293064	25293080	protein_coding	A730045E13Rik	intron	ENSMUSG00000053979	NonProperStrand	1	1	-inf
chr5	76546798	76546888	SINE	B1F2	Alu	chr5B1F276546768	ProperStrand	1	chr5	76546885	76546985	SINE	B2_Mm1t	B2	chr5B2_Mm1t76546901	NonProperStrand	1	1	-inf
chr15	38296870	38296926	LTR	ORR1B1	MaLR	chr15ORR1B138296839	NonProperStrand	2	chr4	138835239	138835305	protein_coding	Capzb	exon	ENSMUSG00000028745	NonProperStrand	22	1	-21.6660
chrX	101206857	101206897	SINE	B1_Mus2	Alu	chrXB1_Mus2101206771	ProperStrand	1	chr1	77436468	77436581	protein_coding	Epha4	intron	ENSMUSG00000026235	ProperStrand	239	1	-inf
chr18	35565099	35565179	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr13	17716595	17716625	protein_coding	5033411D12Rik	intron	ENSMUSG00000055137	NonProperStrand	54	1	-8.6258
chr17	90567113	90567212	protein_coding	Nrxn1	intron	ENSMUSG00000024109	NonProperStrand	30	chr17	90720477	90720567	protein_coding	Nrxn1	intron	ENSMUSG00000024109	ProperStrand	19	1	-15.7510
chr17	39846624	39846795	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	75001733	75002080	LTR	MTA_Mm	MaLR	chr18MTA_Mm75001701	ProperStrand	11	2	-3.3422
chr9	78367287	78367791	SINE	B1_Mm	Alu	chr9B1_Mm78367670	NonProperStrand	55	chr9	82924779	82924821	SINE	B1_Mm	Alu	chr9B1_Mm82924739	ProperStrand	1	1	-inf
chr9	123462014	123462056	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr9	113929083	113929121	protein_coding	Fbxl2	intron	ENSMUSG00000032507	ProperStrand	5	1	-19.0948
chr5	121422113	121422237	protein_coding	Rph3a	intron	ENSMUSG00000029608	NonProperStrand	86	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	89	1	-10.5061
chr1	79593645	79593663	DNA	MER58C	MER1_type	chr1MER58C79593535	NonProperStrand	1	chr11	69667839	69667922	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	1	-inf
chr2	31702801	31702859	SINE	MIRb	MIR	chr2MIRb31702787	ProperStrand	1	chr11	77886680	77886749	miRNA	Mir451	.	ENSMUSG00000070065	NonProperStrand	1	1	-inf
chr13	95512393	95512433	LTR	IAPLTR1a_Mm	ERVK	chr13IAPLTR1a_Mm95512255	NonProperStrand	1	chr5	144934747	144934845	protein_coding	Lmtk2	exon	ENSMUSG00000038970	NonProperStrand	132	1	-inf
chr16	18245000	18245081	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	38	chr13	97190561	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-6.0179
chr3	123507940	123507973	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	48	chr7	38211412	38211475	protein_coding	Zfp536	intron	ENSMUSG00000043456	NonProperStrand	14	1	-15.4213
chr5	130214061	130214078	LTR	MTC-int	MaLR	chr5MTC-int130213995	ProperStrand	1	chr4	132270076	132270123	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	1	-inf
chr7	82207022	82207107	LINE	Lx8	L1	chr7Lx882205814	NonProperStrand	4	chr6	140039473	140039492	LTR	ORR1D2	MaLR	chr6ORR1D2140039330	ProperStrand	2	1	-20.9262
chr16	93355968	93356068	LTR	RLTR11B	ERVK	chr16RLTR11B93355828	ProperStrand	1	chr16	93356528	93356618	LTR	RLTR11B	ERVK	chr16RLTR11B93356549	ProperStrand	1	1	-inf
chrX	17440905	17440942	LINE	Lx5	L1	chrXLx517440824	NonProperStrand	1	chr17	39846492	39846551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr18	77047229	77047261	LTR	MLT1C	MaLR	chr18MLT1C77046999	NonProperStrand	1	chr9	78478970	78479018	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-inf
chr8	106940621	106940714	SINE	B1_Mur4	Alu	chr8B1_Mur4106940586	NonProperStrand	1	chr8	106936482	106936547	SINE	B1_Mus1	Alu	chr8B1_Mus1106936432	NonProperStrand	1	1	-inf
chr7	111686071	111686171	LINE	L1Md_A	L1	chr7L1Md_A111685954	NonProperStrand	1	chr7	111685830	111685920	LINE	L1Md_T	L1	chr7L1Md_T111685758	NonProperStrand	1	1	-inf
chr18	86997678	86997704	LTR	RMER6C	ERVK	chr18RMER6C86997666	ProperStrand	1	chr15	84680567	84680648	protein_coding	Phf21b	intron	ENSMUSG00000016624	NonProperStrand	50	1	-inf
chr12	69159023	69159055	LTR	MURVY-LTR	ERV1	chr12MURVY-LTR69158664	ProperStrand	32	chr15	47539994	47540116	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	152	1	-11.4265
chrX	73022945	73022972	SINE	B3	B2	chrXB373022919	NonProperStrand	1	chr9	123461801	123461838	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr6	49236497	49236606	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chrX	52582840	52582869	pseudogene	Gm14625	.	ENSMUSG00000083051	NonProperStrand	37	1	-10.3034
chr15	76399902	76399946	LTR	MTC	MaLR	chr15MTC76399907	ProperStrand	2	chr16	30376344	30376444	protein_coding	Atp13a3	intron	ENSMUSG00000022533	ProperStrand	59	1	-20.1703
chr12	72493746	72493836	SINE	B1F	Alu	chr12B1F72493761	ProperStrand	1	chr12	72493526	72493626	Simple_repeat	(TG)n	Simple_repeat	chr12(TG)n72493364	NonProperStrand	1	1	-inf
chr5	114124082	114124147	Low_complexity	GA-rich	Low_complexity	chr5GA-rich114124086	NonProperStrand	1	chr9	65201725	65201799	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-inf
chr7	19048841	19048931	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int19048266	NonProperStrand	5	chr7	19049419	19049986	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int19049411	NonProperStrand	3	3	-inf
chr17	39847276	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	180905536	180905552	LTR	IAPEz-int	ERVK	chr2IAPEz-int180904990	ProperStrand	1	1	-inf
chr7	116291690	116291790	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	chr3	9494605	9494695	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	2	-7.4596
chr18	77514009	77514099	LTR	LTR78	ERV1	chr18LTR7877514008	NonProperStrand	2	chr18	77513907	77514007	SINE	B1_Mur1	Alu	chr18B1_Mur177513871	ProperStrand	2	2	-inf
chr2	154400888	154400988	SINE	B1_Mur1	Alu	chr2B1_Mur1154400890	NonProperStrand	1	chr2	154400990	154401081	SINE	B3A	B2	chr2B3A154400980	NonProperStrand	1	1	-inf
chr14	56422134	56422197	LTR	MMERVK10C-int	ERVK	chr14MMERVK10C-int56421882	ProperStrand	2	chr19	34574587	34574685	protein_coding	Lipa	intron	ENSMUSG00000024781	NonProperStrand	2	1	-19.8939
chr16	35981720	35981767	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	chr10	128083900	128083993	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	114	1	-8.8316
chr17	10209549	10209612	LINE	L1Md_F2	L1	chr17L1Md_F210209417	ProperStrand	5	chr17	39847249	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr12	100305893	100305983	LTR	MLT1J	MaLR	chr12MLT1J100305891	NonProperStrand	3	chr12	100305762	100305862	SINE	PB1D9	Alu	chr12PB1D9100305766	ProperStrand	3	3	-inf
chr18	20778495	20778526	antisense	Gm16090	.	ENSMUSG00000085595	NonProperStrand	35	chr16	18533187	18533229	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	1	-14.3847
chr17	39845812	39845950	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	24	3	-9.0232
chr9	123461882	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr9	22032790	22032859	protein_coding	Zfp809	intron	ENSMUSG00000057982	NonProperStrand	16	1	-3.4729
chr17	39848260	39848353	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chrX	98607132	98607193	protein_coding	Zmym3	intron	ENSMUSG00000031310	NonProperStrand	1	1	-inf
chr4	136482761	136482851	LINE	L1M4	L1	chr4L1M4136482712	ProperStrand	1	chr4	136482519	136482619	SINE	ID_B1	B4	chr4ID_B1136482528	NonProperStrand	1	1	-inf
chr8	122479150	122479286	protein_coding-noncoding	Usp10	utr5	ENSMUSG00000031826	ProperStrand	3	chr4	150307316	150307374	protein_coding	Tnfrsf9	intron	ENSMUSG00000028965	ProperStrand	158	1	-16.4569
chr4	57947044	57947091	LTR	RLTR9A2	ERVK	chr4RLTR9A257946983	ProperStrand	1	chr4	57949772	57949829	SINE	PB1D10	Alu	chr4PB1D1057949757	NonProperStrand	1	1	-inf
chr6	29215222	29215273	DNA	MER2	MER2_type	chr6MER229215035	NonProperStrand	1	chr6	3201469	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chrX	74404029	74404097	LINE	L1_Mus3	L1	chrXL1_Mus374403018	NonProperStrand	2	chr9	123461942	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	39847019	39847058	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	26471001	26471030	protein_coding	B9d2	exon	ENSMUSG00000063439	ProperStrand	2	1	-5.3533
chr12	11091994	11092011	LINE	Lx8	L1	chr12Lx811091971	ProperStrand	5	chr17	39847216	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-4.3348
chr5	134257569	134257659	LTR	MT2A	ERVL	chr5MT2A134257577	NonProperStrand	5	chr5	134257474	134257574	Simple_repeat	(CTG)n	Simple_repeat	chr5(CTG)n134257485	NonProperStrand	5	5	-inf
chr16	97034579	97034664	protein_coding	Dscam	intron	ENSMUSG00000050272	ProperStrand	27	chr8	107580649	107580716	protein_coding	Ces3a	intron	ENSMUSG00000069922	NonProperStrand	18	1	-16.0869
chr11	6258792	6258892	LINE	Lx4B	L1	chr11Lx4B6258796	NonProperStrand	1	chr11	6258909	6259000	SINE	B2_Mm1t	B2	chr11B2_Mm1t6258931	NonProperStrand	1	1	-inf
chr1	72373183	72373288	protein_coding	Xrcc5	intron	ENSMUSG00000026187	ProperStrand	76	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-8.1549
chr2	71354237	71354341	protein_coding-noncoding	Metap1d	utr5	ENSMUSG00000041921	ProperStrand	22	chr2	71352406	71352429	protein_coding	Metap1d	intron	ENSMUSG00000041921	ProperStrand	13	1	-17.2573
chr6	113118334	113119440	protein_coding	Lhfpl4	utr3	ENSMUSG00000042873	NonProperStrand	50	chr13	97190567	97190612	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.4777
chr11	120963789	120963889	LINE	Lx8	L1	chr11Lx8120963661	NonProperStrand	5	chr11	120968010	120968100	pseudogene	Gm11793	.	ENSMUSG00000082510	ProperStrand	4	2	-inf
chr4	84933884	84933917	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	117	chr13	97190548	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.8497
chr17	39846462	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	97217642	97217671	SINE	PB1D10	Alu	chr11PB1D1097217573	ProperStrand	1	1	-inf
chr6	30104545	30104635	DNA	MER102c	MER1_type	chr6MER102c30104501	NonProperStrand	2	chr6	30104671	30104771	SINE	RSINE1	B4	chr6RSINE130104674	ProperStrand	1	1	-inf
chr2	157561012	157561112	LTR	ORR1B2-int	MaLR	chr2ORR1B2-int157560857	ProperStrand	1	chr2	157561139	157561229	LTR	ORR1B2	MaLR	chr2ORR1B2157561094	ProperStrand	2	1	-inf
chr11	96938183	96938260	SINE	B1_Mus1	Alu	chr11B1_Mus196938201	ProperStrand	1	chr11	96937875	96937926	SINE	ID4	ID	chr11ID496937857	ProperStrand	1	1	-inf
chr1	191508783	191508873	protein_coding-noncoding	Cenpf	exon	ENSMUSG00000026605	ProperStrand	1	chr1	191508111	191508211	protein_coding	Cenpf	intron	ENSMUSG00000026605	ProperStrand	2	1	-inf
chr2	22744881	22744918	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chrX	106015799	106015845	protein_coding	Brwd3	intron	ENSMUSG00000063663	NonProperStrand	26	1	-8.4852
chr17	39847959	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	20637867	20637948	LTR	MTE2b	MaLR	chr9MTE2b20637883	ProperStrand	1	1	-inf
chr7	80036646	80036746	LINE	L1_Mus3	L1	chr7L1_Mus380036184	NonProperStrand	3	chr7	80039652	80039742	LINE	L1_Mus3	L1	chr7L1_Mus380039108	ProperStrand	6	2	-inf
chr12	38863477	38863582	protein_coding	Dgkb	intron	ENSMUSG00000036095	ProperStrand	31	chr14	20701699	20701716	protein_coding	Gng2	intron	ENSMUSG00000043004	ProperStrand	144	1	-11.5991
chr13	113892850	113892942	LINE	Lx3_Mus	L1	chr13Lx3_Mus113892590	NonProperStrand	3	chr13	113861775	113861840	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	192	2	-21.7323
chr13	23531379	23531476	LTR	LTR40b	ERVL	chr13LTR40b23531406	ProperStrand	3	chr17	86607912	86607931	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	150	1	-16.5651
chr17	39847244	39847334	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	85103454	85103554	protein_coding-noncoding	Btbd11	utr5	ENSMUSG00000020042	ProperStrand	4	1	-4.8204
chr11	8496981	8497045	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr4	132701100	132706967	protein_coding	Wasf2	intron	ENSMUSG00000028868	ProperStrand	25	2	-15.3853
chr1	175485128	175485179	LINE	L1Md_F2	L1	chr1L1Md_F2175481177	ProperStrand	1	chr1	175426047	175426106	LINE	L1_Mus2	L1	chr1L1_Mus2175425270	NonProperStrand	1	1	-inf
chr15	79323103	79323205	protein_coding	Kcnj4	intron	ENSMUSG00000044216	NonProperStrand	1	chr15	79359081	79359171	protein_coding	Ddx17	utr3	ENSMUSG00000055065	NonProperStrand	14	1	-inf
chr19	21277039	21277694	LTR	MLT2C1	ERVL	chr19MLT2C121277012	ProperStrand	1	chr19	21279644	21279744	LTR	ORR1D1	MaLR	chr19ORR1D121279670	ProperStrand	1	1	-inf
chr16	56930990	56931067	LTR	RLTR9E	ERVK	chr16RLTR9E56930940	NonProperStrand	1	chr16	56909800	56909856	pseudogene	Gm15840	.	ENSMUSG00000083467	NonProperStrand	1	1	-inf
chr17	35016335	35016401	protein_coding	C2	intron	ENSMUSG00000024371	NonProperStrand	158	chr17	35017060	35017116	protein_coding	Zbtb12	intron	ENSMUSG00000049823	ProperStrand	5	1	-15.2594
chr12	110799072	110799153	lincRNA	Meg3	exon	ENSMUSG00000021268	NonProperStrand	14	chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.7266
chr17	85088642	85088742	protein_coding	Abcg8	intron	ENSMUSG00000024254	NonProperStrand	5	chr10	42386245	42386335	protein_coding	Ostm1	intron	ENSMUSG00000038280	NonProperStrand	116	1	-15.8673
chr2	164471306	164471406	LINE	L1MB7	L1	chr2L1MB7164471329	NonProperStrand	1	chr2	164471193	164471283	SINE	B3	B2	chr2B3164471106	ProperStrand	1	1	-inf
chr5	118758074	118758093	SINE	RSINE1	B4	chr5RSINE1118758009	NonProperStrand	3	chr5	114852018	114852039	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-15.6664
chr17	39846415	39846454	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	103677364	103677485	pseudogene	Gm13877	.	ENSMUSG00000083495	NonProperStrand	2	2	-inf
chr3	62159159	62159231	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	39	chr9	114509039	114509079	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	446	1	-8.8755
chr13	55700840	55700924	SINE	MIR	MIR	chr13MIR55700864	NonProperStrand	2	chr13	55703034	55703108	protein_coding	B4galt7	intron	ENSMUSG00000021504	ProperStrand	28	1	-21.0040
chr15	96902650	96902740	LINE	L1M2	L1	chr15L1M296902616	ProperStrand	1	chr15	96902472	96902572	SINE	B1_Mus1	Alu	chr15B1_Mus196902409	ProperStrand	1	1	-inf
chr18	34225698	34225798	LINE	L1MB5	L1	chr18L1MB534225672	ProperStrand	1	chr18	34225952	34226042	LTR	RMER15	ERVL	chr18RMER1534225872	ProperStrand	1	1	-inf
chr13	75840002	75840125	Simple_repeat	(GAAA)n	Simple_repeat	chr13(GAAA)n75840030	ProperStrand	1	chr6	126914674	126914693	protein_coding	D6Wsu163e	intron	ENSMUSG00000030347	ProperStrand	2	1	-inf
chr15	12833994	12834113	protein_coding	Drosha	intron	ENSMUSG00000022191	ProperStrand	69	chr7	121778763	121778782	protein_coding	Calca	intron	ENSMUSG00000030669	ProperStrand	2	1	-18.7948
chr10	61113486	61130896	protein_coding	Ppa1	intron	ENSMUSG00000020089	NonProperStrand	13	chr9	123461822	123462164	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	3	-9.7508
chr16	16926793	16926822	protein_coding	Ppm1f	utr3	ENSMUSG00000026181	ProperStrand	31	chr2	167470662	167470750	protein_coding	Gm20431	intron	ENSMUSG00000089739	NonProperStrand	53	1	-13.6076
chrX	104305393	104323424	LINE	L1_Mus2	L1	chrXL1_Mus2104321932	NonProperStrand	3	chrX	104323429	104342559	LINE	L1_Mus4	L1	chrXL1_Mus4104341968	ProperStrand	3	3	-inf
chr8	86774427	86774504	protein_coding	Mri1	utr3	ENSMUSG00000004996	NonProperStrand	1	chr2	121743554	121743614	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	1	-inf
chr15	58947387	58947487	SINE	B3	B2	chr15B358947404	ProperStrand	1	chr5	121873027	121873117	protein_coding	Naa25	intron	ENSMUSG00000042719	ProperStrand	28	1	-inf
chr8	91001068	91001116	LINE	L1_Rod	L1	chr8L1_Rod91001041	NonProperStrand	1	chr9	123462080	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr5	115490323	115490397	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-5.0334
chr1	160203660	160203707	protein_coding	Fam5b	intron	ENSMUSG00000004031	ProperStrand	20	chr7	141984950	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-12.3204
chr3	95001414	95001504	protein_coding-noncoding	Gabpb2	utr3	ENSMUSG00000038766	ProperStrand	5	chr2	71139067	71139167	protein_coding	Slc25a12	intron	ENSMUSG00000027010	ProperStrand	6	1	-inf
chr15	76059618	76061810	protein_coding	Plec	utr5	ENSMUSG00000022565	ProperStrand	94	chr15	76061789	76062747	protein_coding	Parp10	intron	ENSMUSG00000063268	ProperStrand	64	8	-20.8234
chr10	78032613	78032741	SINE	B3	B2	chr10B378032512	ProperStrand	1	chr9	123461912	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	159494748	159494795	LTR	MYSERV-int	ERVK	chrXMYSERV-int159494456	ProperStrand	1	chr17	39843589	39843664	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chrX	93428497	93428541	LINE	L1Md_F2	L1	chrXL1Md_F293428196	NonProperStrand	1	chrX	93446336	93446422	protein_coding	Vsig4	intron	ENSMUSG00000044206	ProperStrand	22	1	-inf
chr4	6213027	6213149	LINE	L1_Mus4	L1	chr4L1_Mus46212368	ProperStrand	3	chr18	80294953	80294972	protein_coding	Pard6g	intron	ENSMUSG00000056214	NonProperStrand	11	1	-inf
chr11	109011810	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	75840155	75847219	protein_coding	Ell2	intron	ENSMUSG00000001542	ProperStrand	4	1	-11.7441
chrX	73703524	73703624	LTR	ORR1A4-int	MaLR	chrXORR1A4-int73703307	ProperStrand	1	chrX	73703641	73703731	LTR	ORR1A4-int	MaLR	chrXORR1A4-int73703655	ProperStrand	1	1	-inf
chr7	108479540	108479640	protein_coding	Stard10	intron	ENSMUSG00000030688	NonProperStrand	2	chr9	45021350	45021439	protein_coding	BC049352	intron	ENSMUSG00000091996	NonProperStrand	3	1	-20.8297
chrX	94189827	94189854	LINE	L1VL2	L1	chrXL1VL294189392	NonProperStrand	1	chr7	110046508	110046544	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	3	1	-inf
chr16	91695035	91695113	protein_coding-noncoding	Cryzl1	utr3	ENSMUSG00000058240	ProperStrand	2	chr16	91694819	91694887	protein_coding	Cryzl1	utr3	ENSMUSG00000058240	ProperStrand	22	1	-21.6660
chr17	39843475	39843550	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	94173180	94173388	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	3	-3.8981
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	6098202	6098224	protein_coding	Gm550	utr3	ENSMUSG00000079472	ProperStrand	4	1	-6.6701
chr3	138760800	138760895	DNA	MER58A	MER1_type	chr3MER58A138760744	NonProperStrand	1	chr17	39846766	39846783	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr6	85459253	85460026	SINE	B3	B2	chr6B385459795	ProperStrand	1	chr6	85459166	85459256	SINE	B4	B4	chr6B485459191	ProperStrand	2	1	-inf
chr5	100312967	100312990	LTR	MT2A	ERVL	chr5MT2A100312936	ProperStrand	1	chr5	100316273	100316359	LTR	RMER15-int	ERVL	chr5RMER15-int100315852	NonProperStrand	1	1	-inf
chr8	70741989	70742054	LTR	RLTR13B3	ERVK	chr8RLTR13B370741922	ProperStrand	2	chr8	70742086	70742174	lincRNA	Gm17236	exon	ENSMUSG00000090348	NonProperStrand	11	2	-inf
chr7	48684099	48684199	protein_coding	Vmn2r57	exon	ENSMUSG00000066537	NonProperStrand	1	chr7	48683809	48683899	protein_coding	Gm20449	intron	ENSMUSG00000092592	NonProperStrand	2	1	-inf
chr11	4818464	4819051	protein_coding	Thoc5	intron	ENSMUSG00000034274	NonProperStrand	16	chr11	4818573	4820403	pseudogene	AA413626	.	ENSMUSG00000084381	NonProperStrand	7	5	-inf
chr12	20233536	20233627	LTR	MMERGLN-int	ERV1	chr12MMERGLN-int20232758	NonProperStrand	17	chr12	20226961	20226998	SINE	B2_Mm1a	B2	chr12B2_Mm1a20226955	ProperStrand	1	1	-inf
chr11	20020865	20020921	LTR	ORR1B1	MaLR	chr11ORR1B120020820	NonProperStrand	5	chr9	21755706	21755794	SINE	B3	B2	chr9B321755686	NonProperStrand	4	1	-inf
chr7	12930796	12930840	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr2	24850151	24850229	protein_coding	Pnpla7	intron	ENSMUSG00000036833	NonProperStrand	78	1	-10.9162
chr3	144562748	144562854	LINE	MusHAL1	L1	chr3MusHAL1144562332	ProperStrand	1	chr19	24490510	24490534	protein_coding	Pip5k1b	intron	ENSMUSG00000024867	ProperStrand	56	1	-inf
chr11	109011826	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr17	26029875	26029921	protein_coding	Rab40c	intron	ENSMUSG00000025730	ProperStrand	53	2	-10.2836
chr14	54627559	54627640	LTR	MTC-int	MaLR	chr14MTC-int54627533	ProperStrand	1	chr5	139242966	139243038	protein_coding	Fam20c	intron	ENSMUSG00000025854	ProperStrand	78	1	-inf
chr17	39847273	39847344	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	46404164	46404200	protein_coding	Tjap1	intron	ENSMUSG00000012296	NonProperStrand	8	1	-3.3803
chr13	23761096	23761157	LTR	RMER5	ERV1	chr13RMER523760834	NonProperStrand	13	chr9	110281288	110281322	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-10.6679
chr7	27549957	27550042	protein_coding-noncoding	Cyp2b19	utr5	ENSMUSG00000066704	NonProperStrand	2	chr7	27548872	27548947	protein_coding	Cyp2b19	intron	ENSMUSG00000066704	NonProperStrand	18	1	-21.0482
chr17	29614829	29614918	lincRNA	Gm16912	intron	ENSMUSG00000087551	NonProperStrand	29	chr11	69669554	69669612	protein_coding	Tnk1	utr5	ENSMUSG00000001583	ProperStrand	269	1	-10.4838
chr2	140019845	140019916	protein_coding	2310003L22Rik	intron	ENSMUSG00000027384	NonProperStrand	20	chr5	114851974	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-11.5293
chr13	59652107	59652137	protein_coding	Agtpbp1	intron	ENSMUSG00000021557	ProperStrand	60	chr4	130314480	130314508	sense_intronic	Gm12971	.	ENSMUSG00000087449	NonProperStrand	3	1	-18.5503
chr5	111349140	111349218	lincRNA	Ttc28	intron	ENSMUSG00000033209	ProperStrand	190	chr8	83903581	83903653	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-4.2793
chr17	39845311	39845361	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr19	29128005	29128070	Simple_repeat	(CA)n	Simple_repeat	chr19(CA)n29128021	ProperStrand	1	1	-inf
chr16	4497143	4497159	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	25	chr16	8712950	8713077	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	1	-10.4324
chr6	115807976	115808049	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	chr6	90718262	90718338	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	1	-8.4116
chr3	96220806	96220846	LTR	RLTR33	ERVK	chr3RLTR3396220444	ProperStrand	5	chr9	123462121	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-9.8714
chr6	29293425	29293528	LINE	Lx8	L1	chr6Lx829293280	ProperStrand	1	chr17	39846462	39846490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr10	4359014	4359053	LINE	L1_Mus2	L1	chr10L1_Mus24357960	NonProperStrand	20	chr11	5296843	5296960	protein_coding	Znrf3	intron	ENSMUSG00000041961	ProperStrand	102	1	-13.1858
chr4	74377659	74377677	LINE	L1_Mur1	L1	chr4L1_Mur174376957	NonProperStrand	3	chr4	101247740	101247875	protein_coding	Dnajc6	intron	ENSMUSG00000028528	NonProperStrand	58	1	-18.5796
chr5	89707810	89707826	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chr2	37904550	37904663	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	335	1	-9.4984
chr4	79610794	79610884	LINE	Lx7	L1	chr4Lx779610802	NonProperStrand	1	chr4	79611008	79611108	LTR	RMER6C	ERVK	chr4RMER6C79611021	ProperStrand	1	1	-inf
chrX	73803204	73803230	LINE	L1Md_F2	L1	chrXL1Md_F273799501	ProperStrand	20	chr9	123461931	123461994	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr10	16175513	16175613	LINE	L1MD2	L1	chr10L1MD216175190	NonProperStrand	1	chr10	16176159	16176249	LINE	L1_Mus1	L1	chr10L1_Mus116175843	NonProperStrand	1	1	-inf
chr19	8234789	8234889	protein_coding	Slc22a29	utr3	ENSMUSG00000075044	NonProperStrand	4	chr19	8275006	8275096	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	10	1	-inf
chr2	18179858	18179943	protein_coding	Dnajc1	intron	ENSMUSG00000026740	NonProperStrand	79	chr11	86501667	86501685	protein_coding	Ptrh2	intron	ENSMUSG00000072582	NonProperStrand	8	1	-15.6204
chr5	92784231	92784283	protein_coding	Art3	intron	ENSMUSG00000034842	ProperStrand	42	chr8	84548565	84549462	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	950	1	-7.2260
chr1	100180179	100180215	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr5	137522668	137522694	SINE	RSINE1	B4	chr5RSINE1137522626	ProperStrand	1	1	-inf
chr17	39847347	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	27778902	27778926	LTR	ORR1E	MaLR	chr19ORR1E27778885	NonProperStrand	1	1	-inf
chr14	79861273	79861373	protein_coding	Wbp4	utr3	ENSMUSG00000022023	ProperStrand	22	chr2	131919406	131919496	protein_coding	Slc23a2	intron	ENSMUSG00000027340	ProperStrand	27	1	-15.6852
chr17	39847248	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	112741196	112741226	protein_coding	Hpx	intron	ENSMUSG00000030895	NonProperStrand	6	1	-3.9545
chrX	20688460	20688515	LINE	Lx3B	L1	chrXLx3B20687315	NonProperStrand	8	chr7	89965799	89965883	LTR	ORR1E-int	MaLR	chr7ORR1E-int89965735	NonProperStrand	4	1	-inf
chrX	7850260	7850287	protein_coding	Slc38a5	intron	ENSMUSG00000031170	ProperStrand	6	chr15	39137305	39137396	protein_coding	Rims2	intron	ENSMUSG00000037386	ProperStrand	43	1	-17.5794
chr5	146260998	146261048	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	22976527	22976566	SINE	RSINE1	B4	chr11RSINE122976492	NonProperStrand	1	1	-inf
chr13	44841291	44841381	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	296	chr7	127199532	127199632	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	147	1	-7.0408
chrX	153142586	153142676	LINE	L1_Mus4	L1	chrXL1_Mus4153142080	NonProperStrand	1	chrX	153142699	153142799	LINE	L1_Mus4	L1	chrXL1_Mus4153142684	ProperStrand	1	1	-inf
chr7	28820227	28820273	LTR	RMER19C	ERVK	chr7RMER19C28820055	ProperStrand	29	chr5	125153646	125179043	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	301	1	-10.2591
chr5	8818464	8818559	protein_coding	Abcb1b	intron	ENSMUSG00000028970	ProperStrand	18	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-8.9940
chr10	20222424	20222484	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr13	24270570	24270667	protein_coding	Lrrc16a	intron	ENSMUSG00000021338	ProperStrand	112	1	-7.4758
chr11	62604545	62604590	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chr17	39848108	39848200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	2	-3.8691
chr6	124917033	124917123	LTR	MTD	MaLR	chr6MTD124917055	ProperStrand	1	chr6	124916833	124916933	SINE	B2_Mm2	B2	chr6B2_Mm2124916818	NonProperStrand	1	1	-inf
chr11	106020525	106020651	protein_coding-noncoding	Limd2	utr3	ENSMUSG00000040699	NonProperStrand	3	chr11	106020436	106020532	protein_coding	Limd2	intron	ENSMUSG00000040699	NonProperStrand	4	3	-inf
chr9	113373056	113373156	SINE	B4	B4	chr9B4113373034	NonProperStrand	1	chr9	113372954	113373044	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n113372950	ProperStrand	1	1	-inf
chr19	61163205	61163305	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	16	chr10	122565826	122565916	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-15.2124
chr19	18607660	18607775	LINE	L1Md_F2	L1	chr19L1Md_F218607012	ProperStrand	1	chr6	3201478	3201502	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr15	80078499	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr17	50195523	50195539	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	12	1	-11.3639
chr4	149426102	149426162	lincRNA	Gm13067	intron	ENSMUSG00000086665	NonProperStrand	19	chr15	79144877	79144958	processed_transcript	Gm20420	.	ENSMUSG00000092494	ProperStrand	1	1	-inf
chr4	132186894	132186945	LTR	RMER4B	ERVK	chr4RMER4B132186762	ProperStrand	1	chr9	64176659	64176761	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	279	1	-inf
chr3	142850037	142850070	LTR	LTR16A	ERVL	chr3LTR16A142849834	ProperStrand	1	chr5	140059490	140059513	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	1	-inf
chr15	64252236	64252336	SINE	B1F1	Alu	chr15B1F164252265	NonProperStrand	1	chr15	64252371	64252461	SINE	B1_Mur1	Alu	chr15B1_Mur164252351	NonProperStrand	1	1	-inf
chr2	121140524	121140600	protein_coding	Ppip5k1	intron	ENSMUSG00000033526	NonProperStrand	22	chr3	129549259	129549340	protein_coding	Cfi	intron	ENSMUSG00000058952	ProperStrand	201	1	-11.6301
chr5	89707811	89707828	LTR	MER21B	ERV1	chr5MER21B89707474	NonProperStrand	38	chrX	73779067	73779094	LTR	RMER13B	ERVK	chrXRMER13B73779010	NonProperStrand	1	1	-inf
chr7	32128659	32128749	LINE	L1_Mus3	L1	chr7L1_Mus332124940	ProperStrand	1	chr18	17512992	17513092	LTR	RLTR26	ERVK	chr18RLTR2617512762	NonProperStrand	1	1	-inf
chr11	62090586	62090680	protein_coding	Zswim7	intron	ENSMUSG00000014243	NonProperStrand	10	chr18	12223094	12223150	protein_coding	6030446N20Rik	intron	ENSMUSG00000049411	ProperStrand	38	1	-16.6421
chr4	75848464	76234366	protein_coding	Ptprd	intron	ENSMUSG00000028399	NonProperStrand	48	chr4	75970094	76486629	protein_coding	Ptprd	intron	ENSMUSG00000028399	ProperStrand	36	3	-inf
chrX	112164819	112164919	SINE	B2_Mm2	B2	chrXB2_Mm2112164788	NonProperStrand	1	chrX	112165288	112165378	SINE	B4A	B4	chrXB4A112165140	NonProperStrand	1	1	-inf
chr11	55482760	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	37	chr3	127401106	127401182	protein_coding	Alpk1	intron	ENSMUSG00000028028	ProperStrand	6	1	-17.9518
chr5	28438243	28438333	SINE	B1_Mur4	Alu	chr5B1_Mur428438164	ProperStrand	1	chr5	28437888	28437988	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n28437864	NonProperStrand	1	1	-inf
chr4	119991107	119991207	LINE	L1M5	L1	chr4L1M5119991116	NonProperStrand	1	chr4	119990796	119990886	Simple_repeat	(GAA)n	Simple_repeat	chr4(GAA)n119990750	ProperStrand	1	1	-inf
chr17	12683695	12683751	protein_coding	Slc22a3	intron	ENSMUSG00000023828	ProperStrand	39	chr15	80981049	80981131	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	1	-10.9356
chr5	113335963	113336088	LTR	MTD	MaLR	chr5MTD113335922	NonProperStrand	1	chr5	113335522	113335555	LTR	RMER19C	ERVK	chr5RMER19C113335358	ProperStrand	7	1	-inf
chr16	15684948	15685024	protein_coding	Prkdc	intron	ENSMUSG00000022672	ProperStrand	42	chr5	5539494	5539576	protein_coding	Gtpbp10	intron	ENSMUSG00000040464	ProperStrand	3	1	-19.3993
chr12	103404237	103404301	protein_coding	Slc24a4	intron	ENSMUSG00000041771	ProperStrand	12	chr15	83149699	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	2	-inf
chr10	105833924	105834024	LINE	L1Md_T	L1	chr10L1Md_T105833663	NonProperStrand	2	chr9	123462087	123462177	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr11	83397795	83397813	lincRNA	E230016K23Rik	intron	ENSMUSG00000051832	ProperStrand	16	chr13	97190541	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.7580
chr8	107150835	107169877	antisense	1700082M22Rik	.	ENSMUSG00000023737	ProperStrand	11	chr4	125711869	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	57	1	-15.6064
chr4	147964504	147964605	SINE	B2_Mm2	B2	chr4B2_Mm2147964496	ProperStrand	1	chr16	37886081	37886171	protein_coding	Lrrc58	utr3	ENSMUSG00000034158	NonProperStrand	1	1	-inf
chr5	146260993	146261039	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	80826789	80826825	protein_coding	Mfsd12	utr3	ENSMUSG00000034854	ProperStrand	42	1	-5.7600
chr2	112313640	112313720	LINE	L1_Mus1	L1	chr2L1_Mus1112313426	ProperStrand	2	chr9	59661646	59661714	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-13.7270
chr14	51090632	51090659	Low_complexity	GA-rich	Low_complexity	chr14GA-rich51090588	ProperStrand	2	chr5	24698724	24698761	protein_coding	Galntl5	intron	ENSMUSG00000028938	ProperStrand	26	1	-20.6107
chr17	17006384	17006507	LINE	Lx2	L1	chr17Lx217006139	ProperStrand	2	chrX	5753567	5753586	LINE	Lx2B	L1	chrXLx2B5751973	ProperStrand	1	1	-inf
chrX	49535628	49535718	SINE	B1F	Alu	chrXB1F49535638	NonProperStrand	1	chrX	49535443	49535543	SINE	MIRb	MIR	chrXMIRb49535458	NonProperStrand	1	1	-inf
chrX	23728822	23728912	LINE	L1Md_A	L1	chrXL1Md_A23722773	ProperStrand	2	chr17	35384390	35384490	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	28	1	-21.0040
chr2	32566383	32566556	protein_coding-noncoding	Cdk9	utr3	ENSMUSG00000009555	NonProperStrand	4	chr9	123462111	123462161	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr7	16352568	16352697	LINE	L1_Mus2	L1	chr7L1_Mus216352552	ProperStrand	10	chr17	39848144	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	7	-21.8044
chr16	8620860	8620878	protein_coding	Gm9851	exon	ENSMUSG00000051226	ProperStrand	1	chr2	155458423	155458496	protein_coding	Myh7b	exon	ENSMUSG00000074652	NonProperStrand	20	1	-inf
chr17	39847173	39847244	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	19705405	19705479	LTR	RMER15-int	ERVL	chr4RMER15-int19705279	NonProperStrand	2	1	-6.5615
chr6	3201470	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr3	65960001	65960093	protein_coding	Veph1	intron	ENSMUSG00000027831	NonProperStrand	9	1	-6.5801
chrX	23246191	23246244	LINE	L1Md_F3	L1	chrXL1Md_F323246030	NonProperStrand	1	chrX	23261607	23261714	LINE	Lx4A	L1	chrXLx4A23261413	NonProperStrand	1	1	-inf
chr17	39847341	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	91926935	91928951	protein_coding-noncoding	Atp5o	utr3	ENSMUSG00000022956	ProperStrand	5	1	-3.2379
chr18	82093771	82093871	LTR	MLT2D	ERVL	chr18MLT2D82093762	NonProperStrand	3	chr18	82093493	82093583	Simple_repeat	(GGGGA)n	Simple_repeat	chr18(GGGGA)n82093405	ProperStrand	3	3	-inf
chr14	11670279	11670368	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	chr1	135308668	135308729	protein_coding	Sox13	intron	ENSMUSG00000070643	ProperStrand	9	1	-11.7528
chr15	64264713	64264752	LINE	Lx8	L1	chr15Lx864264591	NonProperStrand	1	chr9	86394561	86394626	protein_coding	Dopey1	intron	ENSMUSG00000034973	NonProperStrand	10	1	-inf
chr2	155190063	155190100	LINE	L1ME3	L1	chr2L1ME3155190038	ProperStrand	1	chr17	39845991	39846097	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr18	31812542	31812585	protein_coding	Sap130	intron	ENSMUSG00000024260	ProperStrand	80	chr5	132072058	132072120	protein_coding	Auts2	intron	ENSMUSG00000029673	ProperStrand	669	1	-6.6367
chr18	35554488	35554565	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr4	43531992	43532059	protein_coding	Tpm2	intron	ENSMUSG00000028464	ProperStrand	8	1	-12.5492
chr3	158430845	158430935	LINE	L1_Mus3	L1	chr3L1_Mus3158430676	NonProperStrand	1	chr3	158430575	158430675	SINE	B4	B4	chr3B4158430577	ProperStrand	1	1	-inf
chr2	102829372	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr16	23110855	23110929	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-9.7455
chr5	106677406	106677496	LINE	Lx9	L1	chr5Lx9106677411	ProperStrand	1	chr5	106677303	106677403	SINE	B2_Mm2	B2	chr5B2_Mm2106677252	ProperStrand	1	1	-inf
chr14	106566716	106566822	LINE	Lx6	L1	chr14Lx6106566142	NonProperStrand	1	chr7	125680602	125680622	protein_coding	Tmc7	utr3	ENSMUSG00000042246	ProperStrand	40	1	-inf
chr19	3106133	3106233	LTR	ETnERV2-int	ERVK	chr19ETnERV2-int3106034	ProperStrand	1	chr19	3110182	3110272	LTR	ETnERV2-int	ERVK	chr19ETnERV2-int3109752	ProperStrand	1	1	-inf
chr7	82057486	82057586	LINE	L1MEf	L1	chr7L1MEf82057463	NonProperStrand	1	chr12	54696806	54696896	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-inf
chrX	73952281	73952329	LINE	L1Md_T	L1	chrXL1Md_T73946773	ProperStrand	32	chr5	146261044	146261102	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-6.2985
chr5	110274382	110274399	Satellite	MMSAT4	Satellite	chr5MMSAT4110274366	ProperStrand	1	chr9	123461957	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr16	35544016	35544132	protein_coding	Sema5b	intron	ENSMUSG00000052133	ProperStrand	183	1	-7.5805
chr5	146261272	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chrX	52612647	52612677	pseudogene	Gm14625	.	ENSMUSG00000083051	NonProperStrand	37	1	-8.8478
chr13	107248800	107248817	LINE	Lx3_Mus	L1	chr13Lx3_Mus107248144	ProperStrand	3	chr5	74674006	74674066	protein_coding	Scfd2	intron	ENSMUSG00000062110	ProperStrand	53	1	-18.5016
chr11	33006612	33006712	DNA	MER82	MER2_type	chr11MER8233006599	NonProperStrand	1	chr11	33006390	33006480	LTR	MT2A	ERVL	chr11MT2A33006100	ProperStrand	1	1	-inf
chr9	21019006	21019083	SINE	B1_Mur1	Alu	chr9B1_Mur121018929	NonProperStrand	1	chr9	21019092	21019159	SINE	B2_Mm1t	B2	chr9B2_Mm1t21019101	ProperStrand	1	1	-inf
chr17	39846455	39846488	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	76446562	76446661	SINE	B1_Mus1	Alu	chr11B1_Mus176446549	NonProperStrand	1	1	-inf
chr17	39843459	39843552	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	132855492	132855546	protein_coding	Wdtc1	intron	ENSMUSG00000037622	ProperStrand	33	1	-3.6419
chr11	20240576	20241923	SINE	B1_Mur3	Alu	chr11B1_Mur320240560	NonProperStrand	2	chr11	20240687	20242003	SINE	B3A	B2	chr11B3A20241868	NonProperStrand	2	2	-inf
chr2	131918644	131918734	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	79	chr2	5379241	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.0260
chr1	135380565	135380665	LINE	L1MC1	L1	chr1L1MC1135380392	ProperStrand	1	chr1	135380897	135380987	LINE	L1MC1	L1	chr1L1MC1135380789	ProperStrand	1	1	-inf
chr3	142271178	142271239	protein_coding	Gbp1	exon	ENSMUSG00000028269	NonProperStrand	9	chr11	107079781	107079852	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-12.6188
chr10	3914508	3914526	LINE	Lx5	L1	chr10Lx53914491	NonProperStrand	1	chr17	39847444	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39843786	39843820	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-4.5417
chr17	39846730	39846779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	76478032	76478116	protein_coding	Prkra	intron	ENSMUSG00000002731	NonProperStrand	5	1	-3.1907
chr19	34949151	34949247	protein_coding	Pank1	intron	ENSMUSG00000033610	NonProperStrand	27	chr13	45866526	45866572	protein_coding	Atxn1	intron	ENSMUSG00000046876	ProperStrand	103	1	-12.5521
chr7	25752462	25752526	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n25752301	NonProperStrand	1	chr7	25752690	25752776	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n25752714	NonProperStrand	1	1	-inf
chr1	33612089	33612135	protein_coding	Prim2	intron	ENSMUSG00000026134	ProperStrand	141	chr15	81679159	81679259	protein_coding	Tob2	utr3	ENSMUSG00000048546	NonProperStrand	31	1	-11.6414
chr7	30442319	30442527	LTR	MTE2a	MaLR	chr7MTE2a30442418	NonProperStrand	1	chr7	30440252	30440287	LTR	MurERV4_19-int	ERVK	chr7MurERV4_19-int30439756	ProperStrand	7	1	-inf
chr5	14999596	14999696	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int14998676	NonProperStrand	1	chr8	3946756	3946845	protein_coding	Cd209c	utr5	ENSMUSG00000040165	NonProperStrand	11	1	-inf
chr17	39848486	39848601	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr11	105483377	105483396	protein_coding	Tanc2	intron	ENSMUSG00000053580	NonProperStrand	26	1	-3.1396
chr18	57547066	57547106	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	19	chr8	12935928	12936003	protein_coding	Mcf2l	intron	ENSMUSG00000031442	ProperStrand	327	1	-10.9562
chr16	57296919	57296940	LTR	RLTR21	ERVK	chr16RLTR2157295968	ProperStrand	1	chr16	57290315	57290442	protein_coding	Tmem30c	intron	ENSMUSG00000022753	NonProperStrand	21	1	-inf
chr14	77603834	77603890	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	230	chr7	137327904	137327994	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-6.1788
chr15	102479189	102479279	LTR	MLT2B4	ERVL	chr15MLT2B4102479129	ProperStrand	2	chr15	102479299	102479399	LTR	RMER15	ERVL	chr15RMER15102479264	NonProperStrand	2	2	-inf
chr1	89713192	89713225	protein_coding	Sag	intron	ENSMUSG00000056055	ProperStrand	125	chr12	109656372	109656415	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-6.3363
chr18	65985552	65985588	LINE	L1MC1	L1	chr18L1MC165985277	ProperStrand	1	chr9	19537288	19537304	LTR	RMER17B	ERVK	chr9RMER17B19536894	NonProperStrand	1	1	-inf
chr7	28350750	28350804	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	85	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-8.2047
chr1	89692647	89692672	LINE	Lx9	L1	chr1Lx989692339	ProperStrand	6	chr1	89688879	89688914	protein_coding	Atg16l1	utr3	ENSMUSG00000026289	ProperStrand	119	1	-15.4241
chr6	108080495	108080534	protein_coding	Sumf1	intron	ENSMUSG00000030101	NonProperStrand	7	chr7	123162121	123162191	protein_coding	Sox6	intron	ENSMUSG00000051910	NonProperStrand	155	1	-14.5427
chr17	39847257	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	83501795	83501887	pseudogene	Gm11432	.	ENSMUSG00000081449	ProperStrand	7	1	-3.6430
chr3	22082717	22082753	protein_coding	Tbl1xr1	intron	ENSMUSG00000027630	ProperStrand	100	chr10	80865229	80865333	protein_coding	Nfic	intron	ENSMUSG00000055053	NonProperStrand	7	1	-15.4291
chr17	39848097	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr3	87556430	87556502	protein_coding	Pear1	exon	ENSMUSG00000028073	NonProperStrand	4	1	-6.6701
chr7	25734597	25734657	LINE	L2	L2	chr7L225734606	ProperStrand	1	chr7	25733067	25733117	SINE	MIR	MIR	chr7MIR25733059	ProperStrand	1	1	-inf
chr17	39846781	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	67029340	67029445	SINE	B3	B2	chr10B367029288	NonProperStrand	4	2	-6.6967
chr17	46301536	46301626	protein_coding-noncoding	Gtpbp2	utr5	ENSMUSG00000023952	ProperStrand	1	chr17	46301944	46302044	protein_coding	Gtpbp2	exon	ENSMUSG00000023952	ProperStrand	1	1	-inf
chr4	11228861	11228951	protein_coding	Dpy19l4	intron	ENSMUSG00000045205	ProperStrand	21	chr1	153284885	153284985	protein_coding	1190005F20Rik	intron	ENSMUSG00000053286	NonProperStrand	31	1	-15.4925
chr17	46572742	46573433	protein_coding	Slc22a7	intron	ENSMUSG00000067144	ProperStrand	8	chr17	46576827	46576863	protein_coding	Gm5093	exon	ENSMUSG00000091742	ProperStrand	8	1	-19.9835
chr12	27335661	27335719	LINE	L1M4	L1	chr12L1M427334838	NonProperStrand	2	chr17	39843415	39843503	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-9.7547
chr17	39847767	39847803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	100623254	100623352	LTR	MLT-int	MaLR	chrXMLT-int100622964	NonProperStrand	1	1	-inf
chr8	73312357	73312442	protein_coding	Mast3	intron	ENSMUSG00000031833	ProperStrand	91	chr2	69749553	69749609	protein_coding	Ubr3	intron	ENSMUSG00000044308	ProperStrand	27	1	-12.8016
chr9	49037860	49039071	LINE	L1M2	L1	chr9L1M249039000	ProperStrand	9	chr9	49037227	49037877	LINE	L2a	L2	chr9L2a49037659	NonProperStrand	7	5	-20.8997
chr11	88701210	88701239	protein_coding	Akap1	intron	ENSMUSG00000018428	ProperStrand	140	chr4	120451317	120451449	protein_coding	Nfyc	intron	ENSMUSG00000032897	NonProperStrand	13	1	-13.4409
chr17	39847977	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	24184259	24184290	protein_coding	Nlrp5	intron	ENSMUSG00000015721	ProperStrand	1	1	-inf
chr9	72747430	72747491	protein_coding	Prtg	intron	ENSMUSG00000036030	ProperStrand	323	chr5	20860885	20860977	protein_coding	Ccdc146	intron	ENSMUSG00000064280	ProperStrand	82	1	-8.0277
chr1	105664561	105678180	LINE	L1M5	L1	chr1L1M5105664571	ProperStrand	1	chr13	44869575	44869627	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr8	52977802	52977892	LINE	Lx2	L1	chr8Lx252977490	NonProperStrand	1	chr8	52977958	52978058	LINE	Lx5	L1	chr8Lx552977867	ProperStrand	2	1	-inf
chr2	102829377	102829444	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr2	5379259	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	2	-4.5352
chr7	12930796	12930857	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	chr4	9508564	9508610	protein_coding	Asph	intron	ENSMUSG00000028207	ProperStrand	35	1	-12.5333
chrX	24008690	24008717	LINE	L1_Mus1	L1	chrXL1_Mus124005691	NonProperStrand	7	chr4	149120028	149120045	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.9733
chr12	99645573	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	58	chr5	146261005	146261230	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	2	-8.4432
chr12	20905744	20905834	protein_coding	Zfp125	exon	ENSMUSG00000069755	ProperStrand	4	chr12	20905639	20905739	pseudogene	3110053B16Rik	.	ENSMUSG00000085642	ProperStrand	54	4	-inf
chr17	39847502	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr15	76704342	76704500	SINE	PB1D9	Alu	chr15PB1D976704328	NonProperStrand	1	1	-inf
chr10	81382708	81382726	LTR	RLTR33	ERVK	chr10RLTR3381382340	ProperStrand	1	chr17	59028636	59028655	protein_coding	2610034M16Rik	intron	ENSMUSG00000024227	NonProperStrand	2	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	chr19	32352019	32388332	protein_coding	Sgms1	intron	ENSMUSG00000040451	ProperStrand	159	1	-5.9200
chr2	152364773	152364848	protein_coding	Defb29	intron	ENSMUSG00000044249	NonProperStrand	2	chr19	9131157	9131222	protein_coding	Ahnak	intron	ENSMUSG00000069833	ProperStrand	6	2	-inf
chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr9	103562073	103562098	protein_coding	Tmem108	intron	ENSMUSG00000042757	ProperStrand	137	1	-4.3725
chr17	39846639	39846712	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	84676227	84676358	Simple_repeat	(CAG)n	Simple_repeat	chr8(CAG)n84676226	NonProperStrand	1	1	-inf
chr11	117987000	117997527	protein_coding	Cyth1	intron	ENSMUSG00000017132	NonProperStrand	253	chr11	117986879	117986969	protein_coding	Dnahc17	utr5	ENSMUSG00000033987	NonProperStrand	18	2	-18.2340
chr2	33247934	33248024	SINE	B2_Mm1a	B2	chr2B2_Mm1a33247955	NonProperStrand	10	chr2	33247827	33247928	SINE	B3	B2	chr2B333247734	ProperStrand	3	3	-inf
chr15	62113037	62113084	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	1105	chr13	24149409	24149444	protein_coding	Lrrc16a	intron	ENSMUSG00000021338	ProperStrand	112	1	-5.0009
chr5	146261266	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr16	8738686	8738787	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	1	-4.5901
chr5	135527423	135527513	SINE	B1_Mur1	Alu	chr5B1_Mur1135527421	ProperStrand	1	chr5	135527196	135527296	SINE	B3	B2	chr5B3135527218	ProperStrand	1	1	-inf
chr13	51107810	51107841	LTR	MLT2C2	ERVL	chr13MLT2C251107805	ProperStrand	1	chr13	51108148	51108211	LTR	RMER10A	ERVL	chr13RMER10A51108099	NonProperStrand	3	1	-inf
chr19	40222404	40222488	LINE	L1Md_T	L1	chr19L1Md_T40221386	NonProperStrand	5	chr17	39848099	39848159	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-6.1691
chr13	44869950	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr18	44886239	44886317	protein_coding	Mcc	intron	ENSMUSG00000071856	NonProperStrand	20	1	-6.6542
chr1	168004355	168004445	LINE	L1M4	L1	chr1L1M4168004217	NonProperStrand	1	chr1	168004113	168004213	SINE	B1_Mur2	Alu	chr1B1_Mur2168004072	ProperStrand	1	1	-inf
chr13	50445845	50445914	LTR	MMETn-int	ERVK	chr13MMETn-int50445669	NonProperStrand	1	chr17	39847674	39847760	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	120346343	120346669	protein_coding-noncoding	Mrpl12	utr5	ENSMUSG00000039640	NonProperStrand	20	chr11	120346249	120346708	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	9	-21.4407
chr18	90596943	90597003	LINE	L1Md_T	L1	chr18L1Md_T90593455	NonProperStrand	2	chr9	123461993	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr1	72175991	72176013	LTR	IAPEz-int	ERVK	chr1IAPEz-int72172467	ProperStrand	26	chr9	118674951	118674996	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-7.6380
chr3	96140499	96141491	LTR	ORR1B1	MaLR	chr3ORR1B196140477	NonProperStrand	1	chr3	96141491	96141526	Other	RMER1B	Other	chr3RMER1B96141325	ProperStrand	1	1	-inf
chr1	183297461	183297542	protein_coding	Cnih3	intron	ENSMUSG00000026514	ProperStrand	26	chr9	110281288	110281328	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-9.2456
chr3	136833169	136833233	DNA	Tigger6a	MER2_type	chr3Tigger6a136832929	ProperStrand	1	chr9	123461957	123462000	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	83666753	83666853	LTR	MT2C_Mm	ERVL	chr16MT2C_Mm83666394	NonProperStrand	1	chr16	83666971	83667061	Other	RMER1A	Other	chr16RMER1A83666881	ProperStrand	1	1	-inf
chr17	39847037	39847164	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	165558600	165558617	LTR	RLTR13D6	ERVK	chr1RLTR13D6165557916	ProperStrand	1	1	-inf
chr8	90834284	90834318	protein_coding	Adcy7	intron	ENSMUSG00000031659	ProperStrand	24	chr10	42831072	42831151	protein_coding	Sobp	intron	ENSMUSG00000038248	NonProperStrand	27	1	-15.5023
chr11	109011644	109011693	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr13	89978241	89978295	protein_coding	Xrcc4	intron	ENSMUSG00000021615	ProperStrand	57	1	-6.2008
chr9	83162042	83162132	LINE	L1MB3	L1	chr9L1MB383162065	ProperStrand	1	chr9	83161921	83162021	SINE	B2_Mm2	B2	chr9B2_Mm283161814	ProperStrand	2	1	-inf
chr10	91154194	91154230	LTR	MLT1A-int	MaLR	chr10MLT1A-int91154089	ProperStrand	5	chr9	36709077	36709103	protein_coding	Pknox2	intron	ENSMUSG00000035934	ProperStrand	37	1	-18.2685
chr3	153617775	153617835	LTR	ORR1E	MaLR	chr3ORR1E153617579	NonProperStrand	1	chr3	153616742	153616823	SINE	B3A	B2	chr3B3A153616754	ProperStrand	1	1	-inf
chr2	38520937	38520975	LTR	MTA_Mm	MaLR	chr2MTA_Mm38520749	ProperStrand	1	chr12	100131110	100131126	protein_coding	Eml5	intron	ENSMUSG00000051166	NonProperStrand	48	1	-inf
chr8	91559017	91559095	protein_coding	Sall1	intron	ENSMUSG00000031665	NonProperStrand	129	chr7	126795799	126795986	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-7.2468
chr1	59644587	59655507	protein_coding	Gm973	intron	ENSMUSG00000047361	NonProperStrand	30	chr12	80833314	80833404	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	178	1	-11.2411
chr16	17544515	17544547	LINE	L1VL4	L1	chr16L1VL417544506	NonProperStrand	1	chr8	60893847	60895519	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	1	-inf
chr4	29661241	29661341	LTR	RMER6C	ERVK	chr4RMER6C29661066	NonProperStrand	1	chr4	98046426	98046516	protein_coding	Tm2d1	intron	ENSMUSG00000028563	ProperStrand	1	1	-inf
chr4	117071064	117071154	protein_coding	Rnf220	intron	ENSMUSG00000028677	NonProperStrand	93	chr17	14991377	14991477	protein_coding	Wdr27	intron	ENSMUSG00000046991	ProperStrand	6	1	-15.9364
chr17	4082262	4082280	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr6	95531128	95531208	protein_coding	Suclg2	intron	ENSMUSG00000061838	ProperStrand	154	1	-5.7980
chrX	101081951	101081994	LINE	L1_Mm	L1	chrXL1_Mm101081590	NonProperStrand	8	chr19	57378588	57378638	protein_coding	Ablim1	intron	ENSMUSG00000025085	NonProperStrand	26	1	-17.9695
chr1	163264021	163264111	LINE	Lx9	L1	chr1Lx9163263030	ProperStrand	1	chr1	163264281	163264382	LINE	Lx9	L1	chr1Lx9163264298	ProperStrand	1	1	-inf
chr15	56341897	56341987	LINE	L1_Mus2	L1	chr15L1_Mus256341834	NonProperStrand	1	chr15	56342141	56342241	LINE	L1_Mus2	L1	chr15L1_Mus256342137	ProperStrand	1	1	-inf
chr5	146261157	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	45939410	45939463	protein_coding	Sik3	intron	ENSMUSG00000034135	NonProperStrand	65	1	-4.9078
chr15	36583065	36583113	SINE	B1_Mus1	Alu	chr15B1_Mus136583005	NonProperStrand	1	chr15	36583184	36583205	SINE	B3A	B2	chr15B3A36583180	NonProperStrand	12	1	-inf
chr9	118990682	118990806	protein_coding	Plcd1	intron	ENSMUSG00000010660	NonProperStrand	3	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-12.9165
chr16	3909148	3909238	protein_coding	Cluap1	utr5	ENSMUSG00000014232	ProperStrand	11	chr16	3909266	3909366	protein_coding	RP23-312H15.9	intron	ENSMUSG00000093575	ProperStrand	17	1	-17.9409
chr7	19279688	19279779	LINE	L1VL4	L1	chr7L1VL419279382	ProperStrand	5	chr7	19279869	19279969	LINE	L1_Mm	L1	chr7L1_Mm19279885	ProperStrand	4	4	-inf
chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr13	55105401	55105502	protein_coding	Unc5a	intron	ENSMUSG00000025876	ProperStrand	4	1	-3.6552
chr11	29216409	29216437	SINE	B1_Mus2	Alu	chr11B1_Mus229216322	ProperStrand	1	chr7	80461741	80461839	lincRNA	A730056A06Rik	intron	ENSMUSG00000092033	ProperStrand	89	1	-inf
chr4	46115144	46115234	protein_coding	Tmod1	intron	ENSMUSG00000028328	NonProperStrand	18	chr5	113978941	113979041	protein_coding	Wscd2	intron	ENSMUSG00000063430	NonProperStrand	42	2	-21.9186
chr17	39847180	39847322	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr13	74357208	74357225	protein_coding-noncoding	Ahrr	utr3	ENSMUSG00000021575	ProperStrand	3	1	-5.4882
chr14	107970437	107970527	LINE	Lx2	L1	chr14Lx2107970328	NonProperStrand	1	chr14	107970809	107970909	LINE	Lx8	L1	chr14Lx8107970784	ProperStrand	1	1	-inf
chr7	102185930	102186000	LINE	L1Md_T	L1	chr7L1Md_T102180883	ProperStrand	9	chr9	123462102	123462173	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.5963
chr17	39847378	39847409	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	132402128	132402232	LTR	ORR1A2-int	MaLR	chr4ORR1A2-int132400801	NonProperStrand	1	1	-inf
chr17	39846960	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	25291263	25291461	SINE	ID_B1	B4	chr7ID_B125291274	ProperStrand	1	1	-inf
chr5	145130023	145130055	protein_coding	Bri3	intron	ENSMUSG00000047843	NonProperStrand	94	chr3	103984783	103984867	protein_coding	Magi3	intron	ENSMUSG00000052539	NonProperStrand	69	1	-10.8389
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	181819908	181820692	LTR	MTD	MaLR	chr1MTD181819857	ProperStrand	1	1	-inf
chr1	50153295	50153395	LINE	Lx5	L1	chr1Lx550152747	NonProperStrand	1	chr1	50153500	50153590	LTR	RMER19C	ERVK	chr1RMER19C50153459	NonProperStrand	1	1	-inf
chr9	120950541	120950606	protein_coding	Ulk4	intron	ENSMUSG00000040936	NonProperStrand	254	chr11	102154569	102154650	protein_coding	Atxn7l3	intron	ENSMUSG00000059995	ProperStrand	4	1	-14.8106
chr17	39846906	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	35197606	35197696	SINE	B3A	B2	chr2B3A35197569	ProperStrand	1	1	-inf
chr9	66066321	66066361	protein_coding	Dapk2	intron	ENSMUSG00000032380	ProperStrand	49	chr12	109650237	109650324	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-8.1973
chr17	39846034	39846098	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr19	41941603	41941685	protein_coding	Rrp12	intron	ENSMUSG00000035049	NonProperStrand	6	1	-6.3814
chr2	166844603	166844640	protein_coding	Ddx27	intron	ENSMUSG00000017999	ProperStrand	17	chr9	123462082	123462142	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr12	54696812	54696916	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	chr18	80469199	80469222	protein_coding	Pqlc1	exon	ENSMUSG00000034006	NonProperStrand	38	1	-11.3011
chr12	102584336	102584377	LINE	L1Md_T	L1	chr12L1Md_T102583494	ProperStrand	5	chr17	39846642	39846716	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr17	39847230	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	92600121	92600139	LTR	RMER16	ERVK	chr2RMER1692599968	ProperStrand	2	1	-6.5615
chr16	84029389	84029479	LINE	Lx8	L1	chr16Lx884028976	ProperStrand	1	chr16	84029505	84029605	Simple_repeat	(GAAA)n	Simple_repeat	chr16(GAAA)n84029479	ProperStrand	1	1	-inf
chr19	40262445	40262571	LINE	Lx6	L1	chr19Lx640262265	ProperStrand	1	chr7	19591163	19591180	protein_coding	Irf2bp1	exon	ENSMUSG00000044030	ProperStrand	1	1	-inf
chr11	12419255	12419276	LINE	Lx8	L1	chr11Lx812418660	NonProperStrand	4	chr11	12419501	12419541	SINE	B4	B4	chr11B412419399	ProperStrand	1	1	-inf
chr17	4082447	4082543	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr17	12974762	12974809	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	48	1	-11.3097
chr9	113375762	113375779	SINE	RSINE1	B4	chr9RSINE1113375624	NonProperStrand	2	chr2	91009299	91010452	protein_coding	Madd	intron	ENSMUSG00000040687	NonProperStrand	97	1	-18.5168
chr17	39847513	39848084	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	23571407	23571861	protein_coding	Btn2a2	intron	ENSMUSG00000053216	NonProperStrand	38	7	-5.7310
chr1	13635986	13636027	protein_coding	Lactb2	intron	ENSMUSG00000025937	ProperStrand	47	chr11	101604936	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-12.9647
chr2	102159748	102159816	protein_coding	Trim44	intron	ENSMUSG00000027189	ProperStrand	80	chr7	116307811	116307842	protein_coding	Lmo1	intron	ENSMUSG00000036111	ProperStrand	168	1	-9.3794
chr17	4082148	4082238	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr7	6550952	6551052	LTR	MERVK26-int	ERVK	chr7MERVK26-int6550908	NonProperStrand	1	1	-inf
chr15	77300075	77300170	LTR	RMER19B	ERVK	chr15RMER19B77299487	NonProperStrand	6	chr17	39848128	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-5.7734
chr11	94043661	94048418	SINE	B3A	B2	chr11B3A94048312	ProperStrand	1	chr19	5833263	5833349	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	1	-inf
chr1	82395246	82395318	protein_coding	Rhbdd1	intron	ENSMUSG00000026142	NonProperStrand	6	chr7	112886727	112886804	protein_coding	Ilk	intron	ENSMUSG00000030890	ProperStrand	16	1	-19.7048
chr16	18240046	18240146	protein_coding	Ranbp1	utr3	ENSMUSG00000005732	ProperStrand	38	chr16	18240152	18240942	snoRNA	ENSMUSG00000080364_SNORA77	.	ENSMUSG00000080364	ProperStrand	2	1	-20.1300
chrX	48451190	48451290	LINE	L1MB3	L1	chrXL1MB348450585	ProperStrand	3	chrX	48451287	48451378	SINE	B1_Mus1	Alu	chrXB1_Mus148451289	ProperStrand	3	3	-inf
chr7	34254075	34256487	LINE	L1Md_T	L1	chr7L1Md_T34253292	NonProperStrand	1	chr7	34245298	34245342	SINE	B2_Mm2	B2	chr7B2_Mm234245306	NonProperStrand	1	1	-inf
chr16	15726598	15726614	protein_coding	Prkdc	exon	ENSMUSG00000022672	NonProperStrand	18	chr13	97190562	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-7.5176
chr6	125183929	125184019	protein_coding	Cd27	intron	ENSMUSG00000030336	ProperStrand	88	chr6	125180983	125181083	protein_coding	Tapbpl	intron	ENSMUSG00000038213	ProperStrand	61	1	-11.2191
chr15	33892021	33892069	LINE	L1_Mm	L1	chr15L1_Mm33891953	NonProperStrand	1	chr7	132964196	132964303	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	ProperStrand	47	1	-inf
chr11	97776276	97776323	LTR	RMER16	ERVK	chr11RMER1697776212	ProperStrand	1	chr17	39846952	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr19	45868729	45868773	protein_coding	Kcnip2	exon	ENSMUSG00000025221	ProperStrand	8	chr4	5704399	5704504	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	149	1	-14.3386
chr17	39847457	39847944	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	60774678	60778538	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	155	16	-3.4560
chr9	19658023	19658113	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr19	29097214	29097314	protein_coding	Cdc37l1	intron	ENSMUSG00000024780	ProperStrand	8	1	-14.8899
chr9	123462128	123462167	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr10	13179178	13179200	protein_coding	Phactr2	intron	ENSMUSG00000062866	ProperStrand	10	1	-4.3847
chr14	21662275	21662374	protein_coding	Plau	utr3	ENSMUSG00000021822	ProperStrand	53	chr2	5379296	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.7867
chr4	133755432	133755522	protein_coding	Gm7534	intron	ENSMUSG00000073747	ProperStrand	40	chr4	133755904	133756004	pseudogene	Gm13131	.	ENSMUSG00000081772	ProperStrand	1	1	-inf
chr11	68233513	68233603	SINE	PB1	Alu	chr11PB168233494	ProperStrand	1	chr11	68233421	68233521	Simple_repeat	(GA)n	Simple_repeat	chr11(GA)n68233386	NonProperStrand	1	1	-inf
chr12	69159574	69159598	LINE	L1Md_F2	L1	chr12L1Md_F269159199	ProperStrand	1	chr17	39846941	39847008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr8	102468455	102468555	LINE	Lx3C	L1	chr8Lx3C102468287	ProperStrand	1	chr8	102467750	102467840	LTR	RLTR14	ERV1	chr8RLTR14102467752	ProperStrand	1	1	-inf
chr5	28613942	28614032	LINE	Lx7	L1	chr5Lx728611059	ProperStrand	1	chr5	28614076	28614176	LINE	Lx7	L1	chr5Lx728614037	ProperStrand	1	1	-inf
chr18	34602325	34602428	protein_coding	Fam13b	exon	ENSMUSG00000036501	ProperStrand	59	chr13	44869630	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-4.5247
chr1	13082879	13082948	LINE	L1Md_A	L1	chr1L1Md_A13082854	ProperStrand	1	chr2	13575540	13578425	protein_coding	St8sia6	utr3	ENSMUSG00000003418	NonProperStrand	14	1	-inf
chr14	19797213	19797244	LTR	MTC	MaLR	chr14MTC19797184	ProperStrand	1	chr18	35557193	35557229	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-inf
chr4	70307249	70315331	Low_complexity	GA-rich	Low_complexity	chr4GA-rich70307249	NonProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-inf
chr11	84298700	84298723	protein_coding	Aatf	intron	ENSMUSG00000018697	NonProperStrand	44	chr7	142031891	142032007	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-10.7171
chr9	55493524	55493624	protein_coding	Scaper	intron	ENSMUSG00000034007	ProperStrand	71	chr9	53881351	53881441	protein_coding	Tnfaip8l3	intron	ENSMUSG00000074345	ProperStrand	1	1	-inf
chr17	39847437	39847578	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	17849617	17859304	protein_coding-noncoding	Dgcr2	utr3	ENSMUSG00000003166	ProperStrand	4	2	-6.7714
chr7	51061493	51061593	SINE	B3	B2	chr7B351061404	NonProperStrand	1	chr7	51061150	51061240	SINE	B3A	B2	chr7B3A51061106	NonProperStrand	1	1	-inf
chr11	91183461	91183551	LTR	LTR16A1	ERVL	chr11LTR16A191183319	NonProperStrand	1	chr11	91183886	91183986	LTR	RLTR10D	ERVK	chr11RLTR10D91183802	NonProperStrand	1	1	-inf
chr16	8691778	8691801	protein_coding	Usp7	intron	ENSMUSG00000022710	ProperStrand	321	chr11	85608595	85608645	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-6.1506
chrX	67191609	67191700	LINE	L1Md_T	L1	chrXL1Md_T67184082	NonProperStrand	4	chr15	72994519	72994618	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	71	4	-inf
chr15	76002774	76002794	protein_coding	Plec	exon	ENSMUSG00000022565	ProperStrand	94	chr13	97190553	97190598	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.2609
chr11	20824390	20824424	LINE	L1Md_F2	L1	chr11L1Md_F220824108	ProperStrand	1	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-inf
chr2	32163325	32182532	protein_coding	Dnm1	intron	ENSMUSG00000026825	NonProperStrand	224	chr9	77773131	77773159	protein_coding	Elovl5	intron	ENSMUSG00000032349	ProperStrand	59	1	-9.4158
chr8	61620934	61620989	LINE	Lx4B	L1	chr8Lx4B61620450	NonProperStrand	1	chr17	39847249	39847356	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr16	24911615	24911715	protein_coding	Lpp	intron	ENSMUSG00000033306	NonProperStrand	169	chr5	124479266	124479356	protein_coding	Vps37b	intron	ENSMUSG00000066278	NonProperStrand	26	1	-11.6361
chr9	89217585	89217639	LINE	L1Md_F2	L1	chr9L1Md_F289216199	NonProperStrand	2	chr17	39847891	39847953	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr15	50811149	50811210	LINE	Lx3C	L1	chr15Lx3C50810499	NonProperStrand	1	chr15	50808452	50808537	LINE	Lx9	L1	chr15Lx950808305	ProperStrand	1	1	-inf
chr2	92321730	92321799	SINE	B2_Mm1a	B2	chr2B2_Mm1a92321721	NonProperStrand	1	chr2	92322026	92322066	SINE	B3	B2	chr2B392321874	NonProperStrand	1	1	-inf
chr2	31698765	31698867	protein_coding	Fibcd1	intron	ENSMUSG00000026841	NonProperStrand	140	chr17	72896327	72896354	protein_coding	Alk	intron	ENSMUSG00000055471	ProperStrand	23	1	-12.2639
chrX	63117947	63117967	LINE	Lx3C	L1	chrXLx3C63117707	NonProperStrand	1	chr3	95661292	95661341	lincRNA	Gm16884	intron	ENSMUSG00000087673	ProperStrand	40	1	-inf
chr4	146903120	146903210	LINE	L1_Mur2	L1	chr4L1_Mur2146902563	ProperStrand	2	chr4	146977356	146977456	SINE	B2_Mm2	B2	chr4B2_Mm2146977282	ProperStrand	1	1	-inf
chr12	116441216	116441269	LINE	Lx4B	L1	chr12Lx4B116441007	ProperStrand	1	chr17	39847230	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39848119	39848158	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	81649527	81649581	protein_coding	Tef	intron	ENSMUSG00000022389	ProperStrand	15	1	-3.9151
chr9	123462079	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	141678111	141678128	protein_coding	Bmpr1b	intron	ENSMUSG00000052430	NonProperStrand	10	1	-4.3847
chr1	38088011	38088027	protein_coding	Eif5b	intron	ENSMUSG00000026083	ProperStrand	4	chr3	139025427	139025455	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	NonProperStrand	81	1	-17.1320
chr5	43888514	43888532	LINE	L1Md_T	L1	chr5L1Md_T43883063	ProperStrand	1	chr9	78373243	78373353	SINE	B1_Mm	Alu	chr9B1_Mm78373256	ProperStrand	1	1	-inf
chr2	50398416	50398432	LINE	Lx	L1	chr2Lx50397259	ProperStrand	5	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-13.7932
chr3	133466581	133466615	LINE	L1Md_F2	L1	chr3L1Md_F2133466558	NonProperStrand	5	chr17	39846580	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr2	168601391	168601412	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	chr3	95663181	95663198	lincRNA	Gm16884	intron	ENSMUSG00000087673	ProperStrand	40	1	-14.7048
chr4	142165395	142165495	LTR	MLT1G3	MaLR	chr4MLT1G3142165188	NonProperStrand	4	chr4	142165562	142165652	SINE	B4A	B4	chr4B4A142165482	NonProperStrand	4	4	-inf
chr12	54915898	54915961	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr4	53860727	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-7.7484
chr17	39846721	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr14	13263582	13263598	protein_coding	Cadps	intron	ENSMUSG00000054423	NonProperStrand	12	2	-3.1058
chr13	21931164	21931240	LTR	RLTR15	ERVK	chr13RLTR1521931097	NonProperStrand	3	chr11	69073483	69073563	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	29	1	-19.5983
chr4	133071150	133071240	LINE	L1MB4	L1	chr4L1MB4133071014	NonProperStrand	1	chr4	133071270	133071370	LINE	L1MB4	L1	chr4L1MB4133071296	NonProperStrand	1	1	-inf
chr12	78350879	78351014	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr2	122028882	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	1	-6.7490
chr17	56027571	56027631	LTR	MYSERV6-int	ERVK	chr17MYSERV6-int56027537	ProperStrand	4	chr17	56029371	56029393	LTR	RLTR21	ERVK	chr17RLTR2156029172	ProperStrand	2	2	-inf
chr11	33541211	33541341	protein_coding-noncoding	Kcnip1	utr3	ENSMUSG00000053519	NonProperStrand	15	chr11	33541088	33541194	protein_coding	Kcnip1	intron	ENSMUSG00000053519	NonProperStrand	100	4	-inf
chr16	32099151	32099251	protein_coding-noncoding	Pigx	utr3	ENSMUSG00000023791	ProperStrand	3	chr5	27784115	27784205	protein_coding	Dpp6	intron	ENSMUSG00000061576	NonProperStrand	86	3	-inf
chr18	77157534	77157618	LINE	Lx6	L1	chr18Lx677157294	ProperStrand	4	chr18	77157256	77157292	LINE	Lx7	L1	chr18Lx777156946	ProperStrand	2	1	-20.9262
chr17	39846411	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	99766504	99766527	protein_coding	Kcnk10	intron	ENSMUSG00000033854	NonProperStrand	3	1	-4.3017
chr9	100685386	100685460	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	chr12	24074691	24096851	pseudogene	Gm4437	.	ENSMUSG00000092445	ProperStrand	17	1	-13.9328
chr10	4584161	4584261	Low_complexity	CT-rich	Low_complexity	chr10CT-rich4584112	NonProperStrand	1	chr10	4584330	4584420	SINE	B1_Mus1	Alu	chr10B1_Mus14584272	ProperStrand	1	1	-inf
chr17	39848099	39848142	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	78415826	78415903	protein_coding	Slc17a5	intron	ENSMUSG00000049624	NonProperStrand	16	1	-3.7913
chr13	55302971	55306946	SINE	B1_Mus1	Alu	chr13B1_Mus155303032	NonProperStrand	1	chr16	50196402	50196504	protein_coding	Bbx	utr3	ENSMUSG00000022641	ProperStrand	76	1	-inf
chr17	39846450	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	42564212	42564258	SINE	B3A	B2	chr18B3A42564143	NonProperStrand	2	1	-5.3533
chr19	14792257	14792357	LTR	LTR37B	ERV1	chr19LTR37B14792118	NonProperStrand	1	chr13	8767292	8767382	protein_coding	Adarb2	utr3	ENSMUSG00000052551	ProperStrand	25	1	-inf
chr17	39846816	39846879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	104932239	104932332	protein_coding	Serpina1f	intron	ENSMUSG00000021081	ProperStrand	1	1	-inf
chr2	175130468	175130497	Unknown	MurSatRep1	Unknown	chr2MurSatRep1175129836	ProperStrand	1	chr18	34910209	34913564	protein_coding	Cdc25c	intron	ENSMUSG00000044201	ProperStrand	42	1	-inf
chr3	53933890	53933980	LINE	L1_Mur3	L1	chr3L1_Mur353933865	NonProperStrand	1	chr3	53934098	53934198	SINE	B3	B2	chr3B353934059	NonProperStrand	1	1	-inf
chr14	25712880	25712925	LINE	Lx8	L1	chr14Lx825712185	NonProperStrand	1	chr14	25713739	25713843	LTR	ORR1B2	MaLR	chr14ORR1B225713548	NonProperStrand	1	1	-inf
chr2	22744886	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr7	109529863	109529958	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-4.6849
chr1	63535281	63535371	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	435	chr6	144307800	144307900	protein_coding	Sox5	intron	ENSMUSG00000041540	ProperStrand	44	1	-8.6824
chr2	168601397	168601419	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	chr6	33606140	33606257	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	1	-8.6524
chr17	38011250	38011296	LINE	L1_Mur2	L1	chr17L1_Mur238011123	ProperStrand	2	chr11	109012017	109012048	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	1	-19.2441
chr17	4082347	4082447	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr6	66828641	66828731	SINE	B3A	B2	chr6B3A66828649	NonProperStrand	1	1	-inf
chr12	76541196	76541274	LTR	MTB-int	MaLR	chr12MTB-int76541213	ProperStrand	1	chr9	123462101	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	97214098	97214209	SINE	B1_Mur4	Alu	chr11B1_Mur497214101	NonProperStrand	1	chr11	97215299	97215333	SINE	B2_Mm2	B2	chr11B2_Mm297215212	ProperStrand	1	1	-inf
chr9	116097084	116097102	SINE	B4A	B4	chr9B4A116096859	ProperStrand	1	chr11	80400850	80400882	protein_coding	Myo1d	intron	ENSMUSG00000035441	NonProperStrand	97	1	-inf
chr1	58495152	58495252	protein_coding-noncoding	Ppil3	utr3	ENSMUSG00000026035	ProperStrand	1	chr1	58495258	58495348	protein_coding	Ppil3	intron	ENSMUSG00000026035	ProperStrand	12	1	-inf
chr8	107806052	107806098	protein_coding	4931428F04Rik	intron	ENSMUSG00000014837	NonProperStrand	1	chr9	123462099	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	55861647	55861739	LINE	Lx5	L1	chr14Lx555861554	ProperStrand	1	chr17	39846415	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	106771894	106771984	protein_coding	Cdh20	intron	ENSMUSG00000050840	NonProperStrand	61	chr12	3779260	3779360	protein_coding	Dtnb	intron	ENSMUSG00000071454	ProperStrand	124	1	-10.5313
chr6	3201476	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	73393484	73393547	protein_coding	Dennd3	intron	ENSMUSG00000036661	NonProperStrand	30	1	-4.1758
chr17	4082443	4082512	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	107	chr12	78374578	78374652	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-4.7713
chr17	15498168	15498233	LINE	Lx9	L1	chr17Lx915498155	ProperStrand	5	chr2	69079496	69079559	protein_coding	Abcb11	intron	ENSMUSG00000027048	NonProperStrand	32	1	-18.3156
chr14	70615547	70615656	lincRNA	Gm16600	intron	ENSMUSG00000085557	NonProperStrand	20	chr16	36077578	36077600	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	1	-13.3711
chr11	119830877	119830904	protein_coding	Baiap2	intron	ENSMUSG00000025372	ProperStrand	75	chr4	83329317	83329371	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	1	-10.3021
chr9	72626038	72626128	SINE	B3A	B2	chr9B3A72625945	ProperStrand	1	chr9	72626137	72626237	SINE	ID_B1	B4	chr9ID_B172626138	ProperStrand	1	1	-inf
chr15	81957421	81957490	SINE	B1_Mus1	Alu	chr15B1_Mus181957376	NonProperStrand	1	chr15	81957190	81957254	protein_coding	Mei1	utr3	ENSMUSG00000068117	NonProperStrand	96	1	-inf
chr3	101142071	101142171	LINE	L1M5	L1	chr3L1M5101141960	ProperStrand	1	chr3	101141867	101141957	SINE	RSINE1	B4	chr3RSINE1101141802	ProperStrand	1	1	-inf
chr19	5799197	5799245	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	47351247	47351336	protein_coding	Cadm1	intron	ENSMUSG00000032076	NonProperStrand	10	1	-8.0211
chr3	31655986	31656086	LINE	L1MA4A	L1	chr3L1MA4A31655985	NonProperStrand	1	chr3	31655542	31655632	LINE	Lx	L1	chr3Lx31655352	ProperStrand	1	1	-inf
chrX	104131575	104131665	LINE	Lx6	L1	chrXLx6104131563	ProperStrand	5	chrX	104131396	104131496	SINE	MIRb	MIR	chrXMIRb104131359	ProperStrand	2	2	-inf
chr5	60497036	60497126	LINE	L1_Mus1	L1	chr5L1_Mus160496212	ProperStrand	1	chr9	8357009	8357109	LINE	L1Md_T	L1	chr9L1Md_T8354903	ProperStrand	1	1	-inf
chr12	78350926	78351016	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr17	24890665	24890728	protein_coding	Hs3st6	intron	ENSMUSG00000039628	ProperStrand	4	1	-11.5357
chr12	76822205	76822222	protein_coding	Sgpp1	intron	ENSMUSG00000021054	NonProperStrand	17	chr9	123462103	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.3592
chr7	110528620	110528710	LINE	L1Md_F3	L1	chr7L1Md_F3110528334	NonProperStrand	1	chr17	70963676	70963776	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-inf
chr2	93421851	93421867	LTR	MTE2a	MaLR	chr2MTE2a93421498	ProperStrand	6	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-14.7123
chr4	139338118	139381267	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	63	chr13	97190546	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-8.2884
chr15	79667178	79667268	SINE	B4A	B4	chr15B4A79667114	NonProperStrand	2	chr15	79667266	79667366	SINE	B4A	B4	chr15B4A79667289	NonProperStrand	2	2	-inf
chr7	112738003	112738126	SINE	B1F1	Alu	chr7B1F1112737999	NonProperStrand	1	chr7	112738217	112738247	SINE	B3	B2	chr7B3112738223	ProperStrand	1	1	-inf
chr19	5800800	5800890	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	123081778	123081878	protein_coding	Cdcp1	utr3	ENSMUSG00000035498	ProperStrand	55	1	-4.6057
chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	67	chr4	85792655	85792705	protein_coding	Adamtsl1	intron	ENSMUSG00000066113	ProperStrand	23	1	-13.7445
chr1	118892361	118892412	LINE	L1_Mus1	L1	chr1L1_Mus1118891756	ProperStrand	4	chr17	39846806	39846867	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr10	34391188	34391239	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n34391138	NonProperStrand	1	chr16	77545752	77545772	protein_coding	2810055G20Rik	intron	ENSMUSG00000090386	NonProperStrand	5	1	-inf
chr17	60462014	60462104	LINE	L1Md_F2	L1	chr17L1Md_F260461902	ProperStrand	1	chr17	60461740	60461840	LTR	MTEa-int	MaLR	chr17MTEa-int60461497	NonProperStrand	1	1	-inf
chr3	76316790	76316880	protein_coding	Fstl5	intron	ENSMUSG00000034098	NonProperStrand	33	chr3	76331753	76331853	protein_coding	Fstl5	intron	ENSMUSG00000034098	ProperStrand	16	1	-15.9327
chr13	55296142	55298596	SINE	PB1D9	Alu	chr13PB1D955296118	NonProperStrand	1	chr13	44973028	44973079	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr2	46119559	46119649	LINE	L1_Mur1	L1	chr2L1_Mur146119468	ProperStrand	1	chr2	46119324	46119424	LTR	RMER6C	ERVK	chr2RMER6C46118973	ProperStrand	1	1	-inf
chr13	21172825	21172907	LINE	Lx6	L1	chr13Lx621172801	NonProperStrand	5	chr4	136051643	136051714	protein_coding	Luzp1	intron	ENSMUSG00000001089	NonProperStrand	42	1	-18.0379
chr6	3201470	3201536	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	14834229	14834262	protein_coding	Panx1	intron	ENSMUSG00000031934	NonProperStrand	29	1	-4.2407
chr3	88982141	88982231	protein_coding	Scamp3	intron	ENSMUSG00000028049	ProperStrand	7	chr7	111076115	111076215	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-15.6280
chr17	39848721	39848817	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chrX	46585770	46585792	protein_coding	Enox2	intron	ENSMUSG00000031109	NonProperStrand	6	1	-6.0469
chr11	109011808	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr14	45599051	45599100	antisense	Gm17173	.	ENSMUSG00000090709	ProperStrand	9	1	-9.9559
chr13	49545707	49545791	protein_coding	Ippk	intron	ENSMUSG00000021385	NonProperStrand	66	chr14	121543364	121543425	protein_coding	Farp1	intron	ENSMUSG00000025555	NonProperStrand	67	2	-18.0447
chr11	6415937	6418242	protein_coding	Myo1g	exon	ENSMUSG00000020437	NonProperStrand	91	chr3	107302385	107302485	protein_coding	Slc6a17	intron	ENSMUSG00000027894	ProperStrand	46	1	-11.7211
chr4	115811453	115811484	protein_coding	Pomgnt1	intron	ENSMUSG00000028700	ProperStrand	43	chr2	5502926	5502967	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.1924
chr10	30811139	30811214	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	13	chr9	123461977	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.8693
chr13	34060549	34063982	protein_coding	Nqo2	intron	ENSMUSG00000046949	ProperStrand	8	chr5	9108814	9108862	protein_coding	4930420K17Rik	intron	ENSMUSG00000079659	ProperStrand	16	1	-18.8384
chr13	30534880	30534980	LINE	L1_Mur3	L1	chr13L1_Mur330534869	NonProperStrand	1	chr13	30534762	30534852	LINE	L1_Mus1	L1	chr13L1_Mus130533872	NonProperStrand	1	1	-inf
chr3	46545520	46545542	LINE	L1Md_T	L1	chr3L1Md_T46544834	NonProperStrand	1	chr4	141475535	141475632	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	96	1	-inf
chr5	146260995	146261021	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr8	107096425	107096441	Simple_repeat	(GAA)n	Simple_repeat	chr8(GAA)n107096251	NonProperStrand	18	1	-7.4564
chr17	39843449	39847626	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr17	39843346	39847813	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	2070	-22.7563
chr9	113837221	113837271	LINE	Lx9	L1	chr9Lx9113836516	ProperStrand	1	chr5	107212519	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	1	-inf
chr8	127078895	127078985	LTR	MTA_Mm	MaLR	chr8MTA_Mm127078569	ProperStrand	1	chr8	127078998	127079098	LTR	MTEa	MaLR	chr8MTEa127078980	ProperStrand	1	1	-inf
chr17	4082262	4082297	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr8	72319084	72319129	protein_coding	Atp13a1	intron	ENSMUSG00000031862	ProperStrand	57	1	-7.7636
chr7	129408479	129408579	LINE	L1_Rod	L1	chr7L1_Rod129408461	NonProperStrand	1	chr7	129408638	129408728	snRNA	ENSMUSG00000064532_U6	.	ENSMUSG00000064532	NonProperStrand	1	1	-inf
chr2	103033077	103033111	LTR	MTEa	MaLR	chr2MTEa103032929	NonProperStrand	2	chr8	105166655	105166737	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	1	-17.5209
chr4	63580817	63580911	LINE	L1Md_F2	L1	chr4L1Md_F263580122	NonProperStrand	3	chr4	63582448	63582497	LINE	L1Md_F	L1	chr4L1Md_F63581207	NonProperStrand	3	3	-inf
chr17	63469629	63469657	protein_coding	Fbxl17	intron	ENSMUSG00000023965	ProperStrand	37	chr2	164847839	164847877	protein_coding	Ncoa5	intron	ENSMUSG00000039804	ProperStrand	61	1	-12.9666
chr11	69098280	69098370	LINE	Lx3_Mus	L1	chr11Lx3_Mus69098241	ProperStrand	2	chr11	69098384	69098484	SINE	B2_Mm1t	B2	chr11B2_Mm1t69098389	ProperStrand	2	2	-inf
chr17	46703841	46703929	protein_coding	Ptk7	intron	ENSMUSG00000023972	ProperStrand	15	chr1	89542760	89542816	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-10.8543
chr10	76319499	76319522	protein_coding	Pcbp3	intron	ENSMUSG00000001120	ProperStrand	179	chr19	6376650	6376780	protein_coding	Sf1	utr3	ENSMUSG00000024949	ProperStrand	69	1	-9.5493
chr11	113728515	113728609	protein_coding	Sdk2	intron	ENSMUSG00000041592	ProperStrand	144	chr14	122435856	122435922	protein_coding	Timm8a2	intron	ENSMUSG00000071229	NonProperStrand	1	1	-inf
chr17	39846455	39846545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	107649731	107649831	SINE	B3	B2	chr8B3107649714	NonProperStrand	1	1	-inf
chr19	21797212	21797312	LINE	L1MDa	L1	chr19L1MDa21797204	NonProperStrand	2	chr19	21797091	21797181	LTR	MTD	MaLR	chr19MTD21796936	NonProperStrand	1	1	-inf
chr4	116035521	116035588	protein_coding	Mast2	intron	ENSMUSG00000003810	ProperStrand	73	chr2	20643651	20643675	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	1	-8.2537
chr1	151821743	151821773	Low_complexity	GA-rich	Low_complexity	chr1GA-rich151821726	ProperStrand	1	chr2	3327125	3327215	protein_coding	Meig1	intron	ENSMUSG00000026650	NonProperStrand	5	1	-inf
chr16	11203197	11203270	protein_coding	Rsl1d1	utr5	ENSMUSG00000005846	ProperStrand	13	chr11	88851855	88851922	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	1	-14.2425
chr17	39847179	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	102970898	102970914	lincRNA	4930456L15Rik	intron	ENSMUSG00000078618	NonProperStrand	1	1	-inf
chr9	123461904	123461976	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr18	77313157	77313177	protein_coding	Pias2	intron	ENSMUSG00000025423	NonProperStrand	1	1	-inf
chr5	139393910	139393992	SINE	B4	B4	chr5B4139393902	ProperStrand	1	chr11	86152753	86152770	protein_coding	Med13	intron	ENSMUSG00000034297	ProperStrand	27	1	-inf
chr4	120811509	120811599	LINE	L1_Mm	L1	chr4L1_Mm120810947	ProperStrand	1	chr4	120813036	120813136	LTR	MYSERV16_I-int	ERVK	chr4MYSERV16_I-int120812733	ProperStrand	1	1	-inf
chr13	9834317	9834430	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr10	80417214	80417317	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	11	1	-12.5713
chr11	70024887	70024904	LTR	MERVL_2A-int	ERVL	chr11MERVL_2A-int70023597	NonProperStrand	1	chr17	39847174	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39848486	39848598	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr5	65312400	65312420	LINE	L1_Mus3	L1	chr5L1_Mus365312165	NonProperStrand	8	1	-5.4397
chr5	148986650	148986676	protein_coding	Mtus2	intron	ENSMUSG00000029651	ProperStrand	20	chr6	93889458	93889569	protein_coding	Magi1	intron	ENSMUSG00000045095	ProperStrand	1069	1	-8.4887
chr17	45568373	45568416	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	chr5	128120081	128120130	protein_coding	Glt1d1	intron	ENSMUSG00000049971	NonProperStrand	20	1	-11.0235
chr1	51193472	51193562	protein_coding	Tmeff2	intron	ENSMUSG00000026109	ProperStrand	16	chr17	32222137	32224158	pseudogene	Pdxk-ps	.	ENSMUSG00000002791	ProperStrand	20	1	-16.9635
chr19	5799595	5799653	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr2	32288523	32288571	protein_coding	Slc25a25	intron	ENSMUSG00000026819	NonProperStrand	23	1	-6.3179
chr6	125161161	125161277	LTR	ORR1D1	MaLR	chr6ORR1D1125161104	NonProperStrand	1	chr6	125160584	125160623	SINE	B3	B2	chr6B3125160543	NonProperStrand	1	1	-inf
chr9	123461802	123461822	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr3	90220975	90220991	protein_coding	Ints3	intron	ENSMUSG00000027933	NonProperStrand	20	1	-3.0591
chr2	20583138	20583228	protein_coding	Etl4	intron	ENSMUSG00000036617	ProperStrand	324	chr15	80987445	80987545	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	159	1	-6.7074
chr10	20271787	20271819	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	312	chr11	33401777	33401797	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-4.2285
chr10	80284516	80284549	LTR	MurERV4_19-int	ERVK	chr10MurERV4_19-int80284502	ProperStrand	1	chr17	39847575	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	110943213	110945858	protein_coding	Ltf	intron	ENSMUSG00000032496	NonProperStrand	104	chr7	132966029	132966058	protein_coding	D430042O09Rik	intron	ENSMUSG00000032743	ProperStrand	47	1	-11.4094
chr10	91153111	91153211	LINE	Lx9	L1	chr10Lx991152919	NonProperStrand	2	chr10	91153229	91153319	LTR	ORR1B1	MaLR	chr10ORR1B191153190	NonProperStrand	2	2	-inf
chr12	55403025	55403087	LTR	RLTR12B	ERVK	chr12RLTR12B55402657	NonProperStrand	1	chr17	39847276	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr5	146261155	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	56005867	56005887	protein_coding	Zfp119a	exon	ENSMUSG00000057835	ProperStrand	21	1	-7.1436
chr2	22744870	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr16	44352663	44352763	protein_coding	Spice1	intron	ENSMUSG00000043065	ProperStrand	38	1	-7.7201
chr10	95296593	95296690	LINE	L1MC4	L1	chr10L1MC495296531	NonProperStrand	1	chr10	95294098	95294135	LTR	ORR1B1	MaLR	chr10ORR1B195294066	ProperStrand	3	1	-inf
chr13	97190578	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr2	60100525	60100543	protein_coding	Cd302	intron	ENSMUSG00000060703	ProperStrand	10	1	-8.7312
chr5	140084524	140084578	Simple_repeat	(TC)n	Simple_repeat	chr5(TC)n140084441	NonProperStrand	3	chr5	140070832	140070929	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	2	-20.2999
chr17	39845361	39845480	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr14	65672803	65672821	protein_coding	Extl3	utr3	ENSMUSG00000021978	ProperStrand	3	1	-8.2800
chr17	39847754	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	116572328	116572345	LTR	ORR1D1	MaLR	chr8ORR1D1116572287	NonProperStrand	2	1	-5.4040
chr1	167274670	167274719	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	336	chr7	27227843	27227902	protein_coding	Nlrp4a	intron	ENSMUSG00000040601	NonProperStrand	7	2	-20.3740
chr17	39846377	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	143938530	143939960	LTR	MTEa	MaLR	chr2MTEa143938533	ProperStrand	3	2	-8.0300
chrX	7874951	7875015	LINE	L1_Mus3	L1	chrXL1_Mus37874954	ProperStrand	4	chr9	123462122	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr3	41421246	41421277	SINE	ID4	ID	chr3ID441421244	NonProperStrand	1	chr6	120959407	120959473	protein_coding	Mical3	intron	ENSMUSG00000003178	ProperStrand	108	1	-inf
chr5	146261137	146261188	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	72347421	72347475	protein_coding	Tmem169	exon	ENSMUSG00000026188	ProperStrand	20	1	-7.2424
chr11	87819819	87819839	LTR	MTE2b	MaLR	chr11MTE2b87819543	ProperStrand	1	chr2	109931508	109931582	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	254	1	-inf
chr2	36242905	36243005	LINE	L1Md_F3	L1	chr2L1Md_F336242901	ProperStrand	1	chr2	36242824	36242914	LINE	L1_Mus1	L1	chr2L1_Mus136242201	ProperStrand	1	1	-inf
chr12	113056835	113056935	protein_coding	Zfyve21	intron	ENSMUSG00000021286	ProperStrand	26	chr12	113050898	113052257	protein_coding	Xrcc3	intron	ENSMUSG00000021287	NonProperStrand	10	3	-inf
chr11	75500297	75500531	protein_coding	Crk	intron	ENSMUSG00000017776	ProperStrand	72	chr9	113918547	113918598	protein_coding	Fbxl2	intron	ENSMUSG00000032507	NonProperStrand	56	1	-11.7946
chr1	106172814	106172830	LINE	L1Md_T	L1	chr1L1Md_T106170353	ProperStrand	1	chr16	23110847	23110865	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	64	1	-inf
chr10	62185767	62185796	protein_coding	Stox1	intron	ENSMUSG00000036923	ProperStrand	3	chr18	69571808	69571920	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	1	-16.6172
chr16	91190625	91190725	DNA	Arthur1	Tip100	chr16Arthur191190592	ProperStrand	1	chr16	91190362	91190452	SINE	B1_Mur1	Alu	chr16B1_Mur191190311	ProperStrand	1	1	-inf
chrX	98946467	98946536	LTR	ORR1D1	MaLR	chrXORR1D198946327	ProperStrand	1	chr11	70652107	70652160	SINE	B1F1	Alu	chr11B1F170652110	ProperStrand	1	1	-inf
chr7	102411357	102415430	LINE	Lx2B	L1	chr7Lx2B102415354	NonProperStrand	8	chr7	102411267	102411357	LTR	LTR78	ERV1	chr7LTR78102411228	NonProperStrand	2	2	-inf
chr11	100355384	100355474	protein_coding-noncoding	Acly	utr3	ENSMUSG00000020917	ProperStrand	2	chr11	100355290	100355390	protein_coding	Acly	exon	ENSMUSG00000020917	ProperStrand	91	2	-inf
chr6	90948706	90948787	SINE	B1_Mur1	Alu	chr6B1_Mur190948639	NonProperStrand	1	chr9	123461882	123461953	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	45571069	45571162	lincRNA	B230354K17Rik	exon	ENSMUSG00000073393	NonProperStrand	85	chr11	82769469	82769486	protein_coding	Slfn5	intron	ENSMUSG00000054404	ProperStrand	13	1	-14.4427
chr12	4897329	4897423	protein_coding	Ubxn2a	intron	ENSMUSG00000020634	ProperStrand	19	chr17	33794130	33794156	protein_coding	Hnrnpm	intron	ENSMUSG00000059208	ProperStrand	59	2	-inf
chr17	39847341	39847380	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	35164402	35164480	protein_coding	Ng23	exon	ENSMUSG00000036185	ProperStrand	4	1	-3.7035
chr12	71202916	71202971	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	66	chr9	53786744	53786796	protein_coding	Elmod1	intron	ENSMUSG00000041986	NonProperStrand	34	1	-12.9786
chr18	60631178	60631268	LTR	MERVK26-int	ERVK	chr18MERVK26-int60630967	ProperStrand	1	chr18	60630799	60630899	SINE	B1_Mus1	Alu	chr18B1_Mus160630826	ProperStrand	1	1	-inf
chr1	46595528	46595618	LINE	L1Md_F2	L1	chr1L1Md_F246593426	NonProperStrand	1	chr1	46175343	46175443	protein_coding	Dnahc7b	intron	ENSMUSG00000041144	NonProperStrand	9	1	-inf
chr17	39847448	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	21492081	21492114	SINE	B1_Mus1	Alu	chr14B1_Mus121492035	ProperStrand	1	1	-inf
chr17	39847844	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr18	34837618	34837666	SINE	B2_Mm2	B2	chr18B2_Mm234837515	NonProperStrand	1	1	-inf
chr5	100475359	100475450	protein_coding	Enoph1	intron	ENSMUSG00000029326	NonProperStrand	28	chr17	8291631	8291731	protein_coding	Gm1604A	intron	ENSMUSG00000052126	ProperStrand	2	1	-inf
chr1	193117555	193117642	LTR	ORR1A1	MaLR	chr1ORR1A1193117277	ProperStrand	1	chr17	39843588	39843646	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	23	1	-inf
chr17	39845545	39845605	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	mmu-miR-714	2	21	miRNA	mmu-miR-714	.	mmu-miR-714	ProperStrand	5	1	-7.0883
chr4	132310001	132310029	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	189	chr6	90662570	90662588	protein_coding	Iqsec1	intron	ENSMUSG00000034312	ProperStrand	202	1	-7.2990
chr14	64050732	64050822	LTR	ORR1D2	MaLR	chr14ORR1D264050456	ProperStrand	1	chr14	64050901	64051001	SINE	B1_Mm	Alu	chr14B1_Mm64050913	NonProperStrand	1	1	-inf
chr2	23440548	23440648	LINE	Lx4B	L1	chr2Lx4B23439512	ProperStrand	1	chr2	23440857	23440947	LINE	Lx9	L1	chr2Lx923440685	NonProperStrand	1	1	-inf
chrX	129962933	129966581	LINE	L1Md_T	L1	chrXL1Md_T129962921	NonProperStrand	2	chrX	129960117	129962927	LINE	Lx9	L1	chrXLx9129959759	ProperStrand	2	2	-inf
chrX	140459808	140459890	LINE	L1Md_T	L1	chrXL1Md_T140459398	NonProperStrand	2	chrX	140459005	140459077	Satellite	MurSAT1	Satellite	chrXMurSAT1140459015	ProperStrand	2	2	-inf
chr2	33219214	33219275	protein_coding	Ralgps1	intron	ENSMUSG00000038831	ProperStrand	402	chr17	28020549	28020645	protein_coding	Uhrf1bp1	intron	ENSMUSG00000039512	ProperStrand	171	2	-9.9585
chr10	41523852	41523942	protein_coding	Cep57l1	intron	ENSMUSG00000019813	NonProperStrand	53	chr12	21340813	21342957	protein_coding	Adam17	intron	ENSMUSG00000052593	ProperStrand	16	2	-inf
chr12	40410677	40410777	DNA	MER45C	Tip100	chr12MER45C40410635	NonProperStrand	6	chr11	14002327	14002417	lincRNA	4930554G24Rik	intron	ENSMUSG00000085452	NonProperStrand	1	1	-inf
chr5	65659616	65659657	protein_coding	Rfc1	intron	ENSMUSG00000029191	ProperStrand	34	chr5	65634252	65635323	protein_coding	Wdr19	intron	ENSMUSG00000037890	NonProperStrand	28	1	-14.7118
chr17	39848099	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr2	173769979	173770033	LTR	RMER19B	ERVK	chr2RMER19B173769160	ProperStrand	2	1	-8.4422
chr17	39846929	39846992	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr6	94236074	94236127	LTR	MTD-int	MaLR	chr6MTD-int94236011	ProperStrand	1	1	-inf
chr1	124228494	124228594	LTR	MTD	MaLR	chr1MTD124228257	ProperStrand	1	chr1	124228830	124228920	LTR	MTEb	MaLR	chr1MTEb124228691	NonProperStrand	1	1	-inf
chr6	136804076	136804153	protein_coding	Art4	intron	ENSMUSG00000030217	ProperStrand	31	chr9	98990348	98990410	protein_coding	Pik3cb	intron	ENSMUSG00000032462	NonProperStrand	19	1	-15.6866
chr2	165822461	165822552	protein_coding	Ncoa3	intron	ENSMUSG00000027678	ProperStrand	21	chr7	97697974	97698074	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	202	1	-11.7149
chr10	80293975	80294040	SINE	B3A	B2	chr10B3A80293824	NonProperStrand	6	chr9	119083356	119083411	protein_coding	Slc22a14	intron	ENSMUSG00000070280	ProperStrand	5	1	-inf
chr17	39847457	39847491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr17	79465854	79465870	protein_coding	Qpct	intron	ENSMUSG00000024084	ProperStrand	2	1	-5.4040
chr3	33525550	33525568	LINE	L1Md_F2	L1	chr3L1Md_F233525026	ProperStrand	1	chr7	133078065	133078166	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-inf
chr6	54620303	54622162	LTR	MLT1K	MaLR	chr6MLT1K54622024	ProperStrand	1	chr6	54635731	54640835	protein_coding	2410066E13Rik	intron	ENSMUSG00000038065	ProperStrand	7	1	-inf
chr11	102018838	102018866	LTR	RMER19B	ERVK	chr11RMER19B102018819	NonProperStrand	1	chr11	102018984	102019002	SINE	PB1D9	Alu	chr11PB1D9102018951	ProperStrand	1	1	-inf
chr17	39847811	39847845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	67613031	67613096	SINE	B1_Mur4	Alu	chr9B1_Mur467612964	ProperStrand	1	1	-inf
chr2	22744851	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr14	61605298	61605341	protein_coding	Tnfrsf19	intron	ENSMUSG00000060548	NonProperStrand	11	1	-10.2537
chr4	151273982	151274093	SINE	B3A	B2	chr4B3A151273932	ProperStrand	1	chr9	123461835	123461875	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr14	52293949	52294049	LTR	MTE2a	MaLR	chr14MTE2a52293948	NonProperStrand	1	chr11	109378169	109378259	protein_coding	Arsg	intron	ENSMUSG00000020604	ProperStrand	62	1	-inf
chr4	103563332	103563404	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	107	chr11	120347287	120347653	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	89	5	-20.7509
chr5	90368118	90368203	LINE	Lx9	L1	chr5Lx990366995	ProperStrand	1	chr13	97190563	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr9	121454550	121460413	LTR	MTB_Mm	MaLR	chr9MTB_Mm121460267	NonProperStrand	1	chr9	121454497	121454587	LTR	ORR1A4	MaLR	chr9ORR1A4121454358	NonProperStrand	1	1	-inf
chr1	8170837	8170927	LTR	RLTR10	ERVK	chr1RLTR108170760	NonProperStrand	1	chr1	8171099	8171199	LTR	RodERV21-int	ERV1	chr1RodERV21-int8171104	NonProperStrand	1	1	-inf
chr9	86656630	86656674	LINE	Lx9	L1	chr9Lx986656550	NonProperStrand	1	chr9	86659020	86659119	SINE	B3A	B2	chr9B3A86658986	ProperStrand	1	1	-inf
chr4	118910476	118910557	protein_coding	Lepre1	exon	ENSMUSG00000028641	ProperStrand	3	chr4	20052682	20052698	protein_coding	Nkain3	intron	ENSMUSG00000055761	ProperStrand	16	1	-inf
chr19	7468042	7468132	LTR	ORR1D2	MaLR	chr19ORR1D27468054	ProperStrand	2	chr19	7467899	7467999	LTR	RMER15	ERVL	chr19RMER157467696	NonProperStrand	1	1	-inf
chr6	29571086	29572614	Low_complexity	A-rich	Low_complexity	chr6A-rich29571082	NonProperStrand	1	chr6	28812891	28812951	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-inf
chr11	109011675	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	37634536	37634647	protein_coding	Crb2	intron	ENSMUSG00000035403	NonProperStrand	3	1	-12.4363
chr2	30354965	30355334	SINE	B1_Mur3	Alu	chr2B1_Mur330355187	ProperStrand	6	chr2	30350655	30354890	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n30350661	NonProperStrand	6	6	-inf
chr5	124319411	124319501	SINE	B1_Mus2	Alu	chr5B1_Mus2124319390	ProperStrand	1	chr5	124319305	124319405	Simple_repeat	(TTTC)n	Simple_repeat	chr5(TTTC)n124319235	NonProperStrand	1	1	-inf
chr4	121204783	121204879	LTR	RMER17B	ERVK	chr4RMER17B121204577	NonProperStrand	2	chr16	43532428	43532451	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	2	-inf
chr5	33522141	33522202	Simple_repeat	(CATATA)n	Simple_repeat	chr5(CATATA)n33522080	NonProperStrand	5	chr17	70963740	70963796	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-11.3439
chr10	13926297	13926322	LTR	MTA_Mm	MaLR	chr10MTA_Mm13926282	NonProperStrand	1	chr16	36077795	36077873	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	1	-inf
chr1	134604619	134605798	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	223	chr8	13090678	13090778	protein_coding	Pcid2	intron	ENSMUSG00000038542	ProperStrand	42	3	-inf
chr5	139804107	139804207	SINE	B2_Mm2	B2	chr5B2_Mm2139804132	NonProperStrand	3	chr5	139804016	139804106	SINE	B4A	B4	chr5B4A139803844	NonProperStrand	3	3	-inf
chr1	168346198	168346288	LTR	ORR1D1	MaLR	chr1ORR1D1168346218	NonProperStrand	2	chr1	168345994	168346094	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n168346021	NonProperStrand	1	1	-inf
chr13	53858723	53858742	LTR	MLT1A0	MaLR	chr13MLT1A053858662	NonProperStrand	3	chr17	39847222	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr16	20707827	20707849	protein_coding-noncoding	Clcn2	utr3	ENSMUSG00000022843	ProperStrand	4	chr11	30110867	30110899	protein_coding	Spnb2	intron	ENSMUSG00000020315	ProperStrand	88	1	-16.9753
chr9	20697214	20697270	SINE	B2_Mm1a	B2	chr9B2_Mm1a20697193	ProperStrand	2	chr14	60650278	60650344	protein_coding	Atp8a2	intron	ENSMUSG00000021983	NonProperStrand	202	1	-17.0110
chr17	39847762	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	21028158	21028239	SINE	B1_Mur1	Alu	chr9B1_Mur121028118	NonProperStrand	1	1	-inf
chrX	72874227	72874317	LINE	L1Md_F2	L1	chrXL1Md_F272871387	NonProperStrand	3	chr8	3390124	3390224	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	NonProperStrand	12	3	-inf
chr16	17301111	17301140	protein_coding	Pi4ka	exon	ENSMUSG00000041720	ProperStrand	50	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	253	1	-9.5055
chr2	154260120	154260136	SINE	B2_Mm2	B2	chr2B2_Mm2154260021	ProperStrand	3	chr9	30976653	30976741	protein_coding	Aplp2	intron	ENSMUSG00000031996	ProperStrand	20	1	-23.6265
chr17	39848036	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	72293783	72293908	protein_coding	Usp39	intron	ENSMUSG00000056305	ProperStrand	2	1	-5.4040
chr5	75655779	75655840	LINE	L2	L2	chr5L275655746	NonProperStrand	2	chr5	75655486	75655573	LTR	RLTR28	ERVL	chr5RLTR2875655182	ProperStrand	2	2	-inf
chr11	100970209	100970236	protein_coding	Fam134c	intron	ENSMUSG00000017802	ProperStrand	36	chr3	152396665	152396746	protein_coding	Pigk	intron	ENSMUSG00000039047	ProperStrand	95	1	-12.1309
chr17	39847037	39847112	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	107166969	107167030	protein_coding	Chrdl2	intron	ENSMUSG00000030732	ProperStrand	1	1	-inf
chr12	99837761	99837787	LINE	L1ME3A	L1	chr12L1ME3A99837509	NonProperStrand	1	chr17	24721020	24721137	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	1	-inf
chr17	39848069	39848250	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr14	32578841	32578858	protein_coding	Ankrd28	intron	ENSMUSG00000014496	ProperStrand	9	2	-8.2988
chr6	3201455	3201537	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr9	102173138	102173163	protein_coding	Ephb1	intron	ENSMUSG00000032537	ProperStrand	10	1	-6.3611
chr17	39848134	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	85336745	85336834	LTR	RLTR26	ERVK	chr6RLTR2685336398	NonProperStrand	1	1	-inf
chr5	108712434	108712534	LINE	L1Md_A	L1	chr5L1Md_A108712254	ProperStrand	3	chr5	108712571	108712661	LTR	RMER6A	ERVK	chr5RMER6A108712544	ProperStrand	3	3	-inf
chr16	11127258	11127371	protein_coding	Txndc11	intron	ENSMUSG00000022498	ProperStrand	30	chr13	44869896	44869930	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.8435
chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	36	chr8	71291875	71292012	SINE	ID_B1	B4	chr8ID_B171291856	ProperStrand	2	1	-20.3707
chr4	128958953	128959043	SINE	B3	B2	chr4B3128958934	NonProperStrand	2	chr1	119009701	119009801	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n119009710	NonProperStrand	1	1	-inf
chr9	107758649	107758705	protein_coding	Rbm6	intron	ENSMUSG00000032582	ProperStrand	49	chr4	149273784	149273801	protein_coding	Spsb1	intron	ENSMUSG00000039911	NonProperStrand	6	1	-17.2944
chr17	36005712	36005761	protein_coding	Ppp1r18	intron	ENSMUSG00000034595	ProperStrand	4	chr17	36000301	36000360	protein_coding	Nrm	intron	ENSMUSG00000059791	ProperStrand	10	4	-inf
chr6	88417310	88417355	protein_coding	Ruvbl1	intron	ENSMUSG00000030079	NonProperStrand	47	chr6	114859699	114859716	protein_coding	Vgll4	intron	ENSMUSG00000030315	NonProperStrand	45	1	-13.0962
chr1	89498973	89499095	Simple_repeat	(CATA)n	Simple_repeat	chr1(CATA)n89498796	ProperStrand	2	chr1	89522278	89522311	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	439	1	-15.5103
chr3	24126289	24126379	LINE	L1Md_F2	L1	chr3L1Md_F224126119	ProperStrand	1	chr2	120570187	120570287	protein_coding	Ttbk2	intron	ENSMUSG00000090100	ProperStrand	13	1	-inf
chr17	14212413	14212503	LTR	MMVL30-int	ERV1	chr17MMVL30-int14210463	NonProperStrand	1	chr17	14212679	14212779	LTR	MMVL30-int	ERV1	chr17MMVL30-int14212625	NonProperStrand	1	1	-inf
chr11	6394916	6394953	DNA	RCHARR1	MER1_type	chr11RCHARR16394721	ProperStrand	1	chr11	6395047	6395109	SINE	B1_Mm	Alu	chr11B1_Mm6395054	ProperStrand	1	1	-inf
chr17	39846783	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	6983454	6983544	protein_coding	Ezr	intron	ENSMUSG00000052397	NonProperStrand	1	1	-inf
chr17	39847172	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	146477089	146477109	pseudogene	Gm13142	.	ENSMUSG00000081405	ProperStrand	2	1	-6.5615
chr5	134148219	134148239	Satellite	ZP3AR	Satellite	chr5ZP3AR134148061	NonProperStrand	1	chr2	5379308	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	39847256	39847287	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	87216498	87218326	protein_coding	Rad51c	utr5	ENSMUSG00000007646	NonProperStrand	15	2	-4.0614
chr18	33847934	33847997	LINE	L1_Mus3	L1	chr18L1_Mus333847746	ProperStrand	8	chr18	33846394	33846491	LINE	L2	L2	chr18L233846412	ProperStrand	5	5	-inf
chr7	30998381	30998436	LTR	RLTR6-int	ERV1	chr7RLTR6-int30997956	NonProperStrand	1	chr7	30999243	30999327	LTR	RLTR9E	ERVK	chr7RLTR9E30999001	NonProperStrand	1	1	-inf
chr17	39842999	39843050	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr16	11215947	11216015	lincRNA	2610020C07Rik	intron	ENSMUSG00000091524	ProperStrand	17	1	-7.9048
chr18	34838965	34839055	LINE	L2b	L2	chr18L2b34838983	ProperStrand	1	chr18	34285918	34286018	LTR	ERVL-B4-int	ERVL	chr18ERVL-B4-int34285488	NonProperStrand	1	1	-inf
chr19	45773729	45776097	LTR	IAPEz-int	ERVK	chr19IAPEz-int45773954	NonProperStrand	10	chr19	45770191	45771712	SINE	RSINE1	B4	chr19RSINE145771610	NonProperStrand	1	1	-inf
chr8	105328794	105328861	DNA	MER96B	hAT	chr8MER96B105328763	ProperStrand	1	chr8	105326443	105327089	SINE	PB1D10	Alu	chr8PB1D10105327022	ProperStrand	2	1	-inf
chr9	57134601	57134691	SINE	ID4	ID	chr9ID457134601	ProperStrand	9	chr9	57134687	57134788	SINE	ID_B1	B4	chr9ID_B157134669	ProperStrand	9	9	-inf
chr17	39847613	39847836	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	4793559	4794499	processed_transcript	Gm15525	.	ENSMUSG00000084815	NonProperStrand	48	6	-3.2210
chr17	27969272	27969396	SINE	B1_Mur3	Alu	chr17B1_Mur327969239	NonProperStrand	1	chr16	30513423	30513440	protein_coding-noncoding	Tmem44	utr3	ENSMUSG00000022537	NonProperStrand	1	1	-inf
chr11	51604498	51604725	protein_coding	Sar1b	intron	ENSMUSG00000020386	NonProperStrand	109	chr12	78350929	78351019	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	1	-4.7358
chr9	108214750	108214876	protein_coding	Rhoa	intron	ENSMUSG00000007815	NonProperStrand	27	chr19	3519565	3519597	protein_coding	Ppp6r3	intron	ENSMUSG00000024908	ProperStrand	213	1	-11.0959
chr6	3201509	3201528	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	23	1	-4.6887
chr16	94570121	94570146	LTR	MTB	MaLR	chr16MTB94569894	ProperStrand	2	chr16	94570407	94611422	SINE	B4	B4	chr16B494570306	NonProperStrand	2	2	-inf
chr4	141129924	141129967	Simple_repeat	(CA)n	Simple_repeat	chr4(CA)n141129904	NonProperStrand	1	chr11	60418361	60418470	lincRNA	Gm17423	intron	ENSMUSG00000090281	ProperStrand	17	1	-inf
chr1	71615435	71615525	protein_coding-noncoding	Atic	utr5	ENSMUSG00000026192	NonProperStrand	22	chr1	71613998	71615422	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	79	4	-inf
chr16	33291800	33291869	protein_coding	Snx4	intron	ENSMUSG00000022808	ProperStrand	21	chr3	90212705	90212745	protein_coding	Ints3	intron	ENSMUSG00000027933	ProperStrand	29	1	-15.6103
chr12	110540340	110540440	LINE	Lx	L1	chr12Lx110540130	ProperStrand	10	chr1	135144793	135144883	protein_coding	Plekha6	intron	ENSMUSG00000041757	ProperStrand	14	1	-18.3146
chr17	39847427	39848060	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	39407300	39407362	LTR	RLTR10	ERVK	chr6RLTR1039407236	ProperStrand	1	1	-inf
chr2	102829375	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr13	97190561	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-5.3504
chr19	21279294	21279321	LINE	L1MA6	L1	chr19L1MA621278967	ProperStrand	5	chr17	56574228	56574330	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	78	4	-inf
chr11	101462283	101462485	Simple_repeat	(CATG)n	Simple_repeat	chr11(CATG)n101462355	NonProperStrand	2	chr11	101459757	101459847	antisense	Gm11634	.	ENSMUSG00000085486	ProperStrand	18	1	-21.0482
chr17	50420126	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr11	50241720	50241799	protein_coding	Rufy1	intron	ENSMUSG00000020375	NonProperStrand	40	1	-10.7623
chr11	109011819	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr7	126797769	126799166	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-3.0246
chr3	44210738	44210828	LINE	L1Md_A	L1	chr3L1Md_A44210462	NonProperStrand	1	chr3	27049730	27049830	protein_coding	Ect2	intron	ENSMUSG00000027699	ProperStrand	2	1	-inf
chr2	156436202	156436302	lincRNA	Gm14169	exon	ENSMUSG00000086118	ProperStrand	1	chr7	141304470	141304560	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	181	1	-inf
chr4	7701837	7701927	LINE	L1VL4	L1	chr4L1VL47701013	ProperStrand	1	chr4	7702053	7702153	LINE	L1_Mur2	L1	chr4L1_Mur27702079	ProperStrand	1	1	-inf
chrX	102187418	102187943	LINE	L1Md_F2	L1	chrXL1Md_F2102187802	NonProperStrand	10	chr17	39846462	39846902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	2	-3.6091
chr17	39848055	39848075	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	26911023	26911056	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n26911032	ProperStrand	1	1	-inf
chr11	52099018	52099082	antisense	A630014C17Rik	.	ENSMUSG00000086395	ProperStrand	7	chr11	4406245	4406319	protein_coding	Mtmr3	intron	ENSMUSG00000034354	ProperStrand	84	1	-15.7686
chr9	44426197	44426248	protein_coding	Ddx6	intron	ENSMUSG00000032097	ProperStrand	4	chr6	47788071	47788159	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	41	1	-18.8469
chr11	121245376	121246946	protein_coding	Rab40b	intron	ENSMUSG00000025170	NonProperStrand	20	chr9	123461874	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.0591
chr14	101920533	101922139	protein_coding	Tbc1d4	intron	ENSMUSG00000033083	NonProperStrand	12	chr9	65201725	65201767	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-14.3432
chr12	84770228	84770328	SINE	B3A	B2	chr12B3A84770139	ProperStrand	2	chr12	84770329	84770419	SINE	ID_B1	B4	chr12ID_B184770330	ProperStrand	2	2	-inf
chr5	137026975	137027087	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	113	chr2	156877869	156877892	protein_coding	9830001H06Rik	intron	ENSMUSG00000055485	ProperStrand	9	1	-14.6470
chr3	107601453	107601553	LTR	MER72	ERV1	chr3MER72107601466	ProperStrand	1	chr3	107601188	107601278	LTR	MLT1D-int	MaLR	chr3MLT1D-int107601181	NonProperStrand	1	1	-inf
chr10	55619442	55619542	LINE	L1Md_T	L1	chr10L1Md_T55614340	NonProperStrand	1	chr10	55619864	55619954	LINE	L1Md_T	L1	chr10L1Md_T55619561	NonProperStrand	1	1	-inf
chr12	110471136	110471230	LINE	L1Md_F3	L1	chr12L1Md_F3110469843	ProperStrand	4	chr12	110485734	110485782	LINE	L1_Mus1	L1	chr12L1_Mus1110484847	ProperStrand	31	1	-19.3491
chr7	125235236	125235336	LTR	ORR1C1-int	MaLR	chr7ORR1C1-int125234957	NonProperStrand	1	chr7	125234657	125234748	LTR	ORR1C1	MaLR	chr7ORR1C1125234632	NonProperStrand	1	1	-inf
chr17	39846364	39846463	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	119581241	119581280	protein_coding	Ltk	intron	ENSMUSG00000027297	NonProperStrand	5	1	-3.1907
chr15	97787746	97787846	LTR	MTA_Mm	MaLR	chr15MTA_Mm97787751	ProperStrand	3	chr15	97787622	97787714	LTR	RLTR11A	ERVK	chr15RLTR11A97787598	ProperStrand	7	3	-inf
chr4	149120030	149120047	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr18	77525725	77525837	protein_coding	Loxhd1	intron	ENSMUSG00000032818	NonProperStrand	260	1	-3.7444
chr14	103034814	103034914	LTR	MERVL-int	ERVL	chr14MERVL-int103034732	ProperStrand	1	chr14	103034516	103034606	LTR	MT2_Mm	ERVL	chr14MT2_Mm103034243	ProperStrand	1	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr11	77031907	77031925	protein_coding	Ssh2	intron	ENSMUSG00000037926	ProperStrand	13	1	-9.9054
chr4	146922077	146922178	LTR	MMETn-int	ERVK	chr4MMETn-int146918987	NonProperStrand	3	chr4	146445673	146445763	lincRNA	Gm16889	intron	ENSMUSG00000084976	NonProperStrand	52	2	-inf
chr11	6358034	6358124	SINE	B2_Mm2	B2	chr11B2_Mm26357958	ProperStrand	4	chr12	87335277	87335377	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	132	3	-inf
chr11	85055425	85055525	LTR	RMER16	ERVK	chr11RMER1685055180	ProperStrand	1	chr11	85055060	85055150	SINE	B1_Mus2	Alu	chr11B1_Mus285055021	ProperStrand	1	1	-inf
chr5	57597768	57597858	LINE	L1_Mus4	L1	chr5L1_Mus457595730	ProperStrand	1	chr5	57779804	57779904	LTR	RMER6D	ERVK	chr5RMER6D57779707	NonProperStrand	1	1	-inf
chr13	97190560	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	chr7	141402780	141402812	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	184	1	-3.0241
chr17	39846660	39846711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	25460513	25460610	SINE	B3A	B2	chr7B3A25460498	NonProperStrand	1	1	-inf
chr17	39845361	39845429	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chrX	103448492	103448530	protein_coding	Fnd3c2	intron	ENSMUSG00000073012	NonProperStrand	28	1	-3.5963
chr14	19950880	19950991	LINE	L1MD1	L1	chr14L1MD119950845	ProperStrand	4	chr14	19950988	19951088	LINE	Lx6	L1	chr14Lx619950971	ProperStrand	4	3	-inf
chr8	71684531	71684621	SINE	B1_Mus1	Alu	chr8B1_Mus171684514	ProperStrand	1	chr14	55544984	55545243	protein_coding	Efs	utr5	ENSMUSG00000022203	NonProperStrand	8	1	-inf
chr15	98841346	98841446	SINE	B3A	B2	chr15B3A98841202	ProperStrand	1	chr15	98841472	98841562	SINE	RSINE1	B4	chr15RSINE198841482	ProperStrand	1	1	-inf
chr2	22744858	22744921	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr9	113918979	113918999	protein_coding	Fbxl2	intron	ENSMUSG00000032507	NonProperStrand	56	1	-6.9455
chr4	54581074	54581174	LTR	ORR1A0-int	MaLR	chr4ORR1A0-int54581057	ProperStrand	1	chr4	54580961	54581051	LTR	ORR1A0	MaLR	chr4ORR1A054580711	ProperStrand	1	1	-inf
chr14	75847904	75848034	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	30	chr2	157021021	157021038	protein_coding	Rbl1	exon	ENSMUSG00000027641	NonProperStrand	3	1	-19.6976
chr17	70799596	70799664	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	359	chr2	130629129	130629224	protein_coding	4930402H24Rik	intron	ENSMUSG00000027309	ProperStrand	117	1	-7.1115
chr2	59161048	59214705	protein_coding	Pkp4	intron	ENSMUSG00000026991	ProperStrand	97	chr2	121518868	121518910	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	4	-inf
chr4	150346795	150346885	LTR	MTB-int	MaLR	chr4MTB-int150345810	ProperStrand	1	chr4	150346893	150346993	LTR	MTB	MaLR	chr4MTB150346860	ProperStrand	2	1	-inf
chr9	119239096	119239178	LTR	ERVL-E-int	ERVL	chr9ERVL-E-int119239108	ProperStrand	4	chr9	119239525	119239599	LTR	RMER13A	ERVK	chr9RMER13A119239439	ProperStrand	1	1	-inf
chr11	97414239	97414339	protein_coding	Srcin1	intron	ENSMUSG00000038453	ProperStrand	7	chr11	106175470	106175560	protein_coding	Cd79b	intron	ENSMUSG00000040592	ProperStrand	7	1	-inf
chr18	80137051	80137128	LINE	L1Md_F2	L1	chr18L1Md_F280136774	NonProperStrand	1	chr5	123969019	123969042	protein_coding	Diablo	intron	ENSMUSG00000029433	NonProperStrand	2	1	-inf
chr13	9834327	9834378	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	257	chr18	34626801	34626960	protein_coding	Fam13b	intron	ENSMUSG00000036501	NonProperStrand	18	1	-11.5492
chr4	18473072	18473150	processed_transcript	Gm11867	.	ENSMUSG00000087402	ProperStrand	17	chr9	99322766	99322796	protein_coding	Mras	intron	ENSMUSG00000032470	ProperStrand	17	1	-17.1191
chr9	91588004	91588104	LTR	MYSERV6-int	ERVK	chr9MYSERV6-int91587248	NonProperStrand	1	chr9	91588375	91588465	LTR	RMER4B	ERVK	chr9RMER4B91588337	NonProperStrand	1	1	-inf
chr2	155681760	155681850	protein_coding	Uqcc	intron	ENSMUSG00000005882	ProperStrand	21	chr8	121339514	121339613	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	325	1	-10.7634
chr17	39847274	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	92781482	92781505	protein_coding	A730049H05Rik	intron	ENSMUSG00000048636	ProperStrand	5	1	-4.3348
chr6	115568020	115568620	protein_coding	Mkrn2	utr3	ENSMUSG00000000439	ProperStrand	30	chr6	115568874	115569144	protein_coding	Raf1	utr3	ENSMUSG00000000441	NonProperStrand	32	2	-19.8589
chr17	39846273	39846356	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	87977331	87977368	LTR	RMER16-int	ERVK	chr17RMER16-int87977335	NonProperStrand	1	1	-inf
chr14	21848072	21848234	protein_coding	Vcl	intron	ENSMUSG00000021823	NonProperStrand	8	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-10.0749
chr6	75528155	75528255	LINE	Lx7	L1	chr6Lx775528139	ProperStrand	1	chr6	75528483	75528573	LTR	IAPEY3_LTR	ERVK	chr6IAPEY3_LTR75528317	ProperStrand	1	1	-inf
chr9	96270850	96270888	LTR	MLT1A1	MaLR	chr9MLT1A196270814	ProperStrand	1	chr9	96252716	96252784	protein_coding	Atp1b3	intron	ENSMUSG00000032412	NonProperStrand	27	1	-inf
chr14	67720972	67721039	SINE	B1_Mus1	Alu	chr14B1_Mus167720965	ProperStrand	1	chr9	123461930	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	79993651	79993741	LINE	L1MC4	L1	chr11L1MC479993592	ProperStrand	18	chr11	79993749	79993850	SINE	B1_Mus2	Alu	chr11B1_Mus279993765	NonProperStrand	11	11	-inf
chr2	13174690	13174749	protein_coding	Rsu1	intron	ENSMUSG00000026727	ProperStrand	40	chr11	95290173	95290248	protein_coding	Spop	intron	ENSMUSG00000057522	NonProperStrand	27	1	-14.4616
chr2	122241349	122241450	LINE	L1Md_F2	L1	chr2L1Md_F2122235499	NonProperStrand	4	chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr5	146290221	146290280	LINE	L1Md_F2	L1	chr5L1Md_F2146289218	NonProperStrand	1	chr5	146291670	146291719	LINE	L1Md_F2	L1	chr5L1Md_F2146291164	NonProperStrand	1	1	-inf
chr17	39846353	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	112974699	112977568	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	85	-inf
chr19	12299092	12299108	LTR	MERVL-int	ERVL	chr19MERVL-int12296843	NonProperStrand	1	chr13	112578190	112578274	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	1	-inf
chr18	8318983	8319083	LINE	L1_Mur2	L1	chr18L1_Mur28319005	NonProperStrand	1	chr18	8318836	8318926	LTR	ORR1A2	MaLR	chr18ORR1A28318680	ProperStrand	1	1	-inf
chr3	95841776	95841860	protein_coding	Vps45	intron	ENSMUSG00000015747	ProperStrand	31	chr8	88199258	88199330	protein_coding	Neto2	intron	ENSMUSG00000036902	NonProperStrand	54	1	-13.5717
chr17	39847326	39847382	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr11	120610542	120610630	SINE	B1_Mus2	Alu	chr11B1_Mus2120610495	ProperStrand	8	1	-3.3803
chr6	3201448	3201530	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr8	11402984	11403365	protein_coding	Col4a2	exon	ENSMUSG00000031503	ProperStrand	21	1	-4.8667
chr16	4065354	4068267	protein_coding	Trap1	exon	ENSMUSG00000005981	ProperStrand	68	chr16	58471180	58471235	protein_coding	St3gal6	intron	ENSMUSG00000022747	NonProperStrand	3	1	-18.0545
chr16	85572838	85572938	LINE	L1_Mur3	L1	chr16L1_Mur385572564	ProperStrand	1	chr16	85572980	85573070	LINE	L1_Mus1	L1	chr16L1_Mus185572997	ProperStrand	2	1	-inf
chrX	156078528	156078618	protein_coding	Sh3kbp1	intron	ENSMUSG00000040990	ProperStrand	7	chrX	155817965	155818065	protein_coding	Eif1ax	intron	ENSMUSG00000067194	NonProperStrand	2	2	-inf
chr1	38060115	38060208	protein_coding	Eif5b	intron	ENSMUSG00000026083	NonProperStrand	68	chr9	78478769	78478822	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	1	-7.2578
chr2	93788723	93788763	LINE	L1M7	L1	chr2L1M793788583	NonProperStrand	1	chr2	93783959	93784068	LTR	MTEa	MaLR	chr2MTEa93783777	NonProperStrand	1	1	-inf
chr10	81562714	81562804	LTR	MT2B	ERVL	chr10MT2B81562696	ProperStrand	1	chr17	39845853	39845953	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr13	18745338	18791646	LINE	L1Md_T	L1	chr13L1Md_T18745273	ProperStrand	1	chr17	39847277	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr4	132530800	132533366	protein_coding	Fgr	utr5	ENSMUSG00000028874	NonProperStrand	17	chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.9833
chr17	39846884	39846942	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	102218506	102218539	SINE	B1_Mm	Alu	chr15B1_Mm102218470	NonProperStrand	1	1	-inf
chr17	39846415	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	53267844	53267893	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n53267828	NonProperStrand	1	1	-inf
chr10	82355454	82355483	protein_coding	Txnrd1	intron	ENSMUSG00000020250	ProperStrand	4	chr9	70554650	70554719	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-16.9275
chr17	21581986	21582031	SINE	B1_Mus1	Alu	chr17B1_Mus121581957	NonProperStrand	1	chr13	9384133	9384157	protein_coding	Dip2c	intron	ENSMUSG00000048264	ProperStrand	206	1	-inf
chr13	44869583	44869683	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr4	11353351	11353441	protein_coding	Gm17283	intron	ENSMUSG00000067549	NonProperStrand	60	1	-4.4925
chr5	125095260	125163010	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	301	chr13	44869604	44869703	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-3.0646
chr18	35607585	35607699	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr5	115489511	115489557	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	1	-5.5846
chr9	64420418	64420442	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	112	chr1	22402051	22402144	protein_coding	Rims1	intron	ENSMUSG00000041670	ProperStrand	21	1	-12.8972
chr8	106201020	106201120	LINE	L1Md_F	L1	chr8L1Md_F106196486	NonProperStrand	7	chr8	106202234	106202324	LINE	L1Md_F2	L1	chr8L1Md_F2106201628	NonProperStrand	2	2	-inf
chr7	142032429	142032519	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	chr4	146915435	146915535	protein_coding	Gm16503	utr3	ENSMUSG00000078160	NonProperStrand	4	1	-15.7900
chr11	116757692	116757744	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr6	93136068	93136137	lincRNA	9530026P05Rik	intron	ENSMUSG00000087573	ProperStrand	66	1	-12.4566
chr1	97676622	97676722	LINE	Lx9	L1	chr1Lx997676571	ProperStrand	1	chr1	97676320	97676410	LTR	ORR1B2	MaLR	chr1ORR1B297676201	NonProperStrand	1	1	-inf
chr15	99198547	99198647	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	chr15	99198471	99198561	snRNA	ENSMUSG00000064723_U6	.	ENSMUSG00000064723	NonProperStrand	6	6	-inf
chr5	144134222	144134278	protein_coding	Grid2ip	intron	ENSMUSG00000010825	ProperStrand	61	chr17	46747542	46752034	protein_coding	Ptk7	intron	ENSMUSG00000023972	ProperStrand	15	1	-14.8095
chr13	40885560	40885599	LTR	MTD	MaLR	chr13MTD40885492	NonProperStrand	1	chr13	40890754	40890863	LTR	RMER6C	ERVK	chr13RMER6C40890614	NonProperStrand	3	1	-inf
chr7	49819350	49819403	LINE	Lx	L1	chr7Lx49819234	NonProperStrand	2	chr8	94039260	94039341	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	2	-inf
chr16	32215571	32215671	LINE	L1MB3	L1	chr16L1MB332215515	ProperStrand	1	chr16	32215276	32215366	SINE	B4	B4	chr16B432215261	ProperStrand	1	1	-inf
chr15	93002231	93002311	LINE	L1Md_T	L1	chr15L1Md_T93000168	ProperStrand	1	chr15	93080903	93080964	protein_coding	Gxylt1	intron	ENSMUSG00000036197	NonProperStrand	3	1	-inf
chr15	85468405	85468432	LINE	L1Md_A	L1	chr15L1Md_A85468164	ProperStrand	1	chr1	131573996	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-inf
chr2	13878885	13878907	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	12	chr17	70963685	70963792	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-9.4619
chr5	79614354	79614444	LINE	L1_Mur1	L1	chr5L1_Mur179614315	ProperStrand	1	chr5	79614806	79614906	LTR	RLTR45	ERVK	chr5RLTR4579614719	ProperStrand	1	1	-inf
chr1	73373211	73373311	LINE	Lx	L1	chr1Lx73372563	ProperStrand	1	chr1	73373644	73373734	LTR	MLT1C	MaLR	chr1MLT1C73373662	ProperStrand	1	1	-inf
chr12	104840199	104840219	protein_coding	Ppp4r4	intron	ENSMUSG00000021209	NonProperStrand	63	chr4	116457004	116457108	protein_coding	Tesk2	intron	ENSMUSG00000033985	NonProperStrand	46	1	-12.4606
chrX	94204058	94205092	LINE	L1_Rod	L1	chrXL1_Rod94202864	ProperStrand	3	chr18	69685775	69685791	protein_coding	Tcf4	intron	ENSMUSG00000053477	NonProperStrand	22	1	-21.7474
chr15	99782778	99782815	protein_coding	1700030F18Rik	intron	ENSMUSG00000045350	ProperStrand	53	chr10	100037140	100037167	protein_coding	4930430F08Rik	intron	ENSMUSG00000046567	ProperStrand	1	1	-inf
chr3	105758996	105759039	protein_coding	Atp5f1	intron	ENSMUSG00000000563	ProperStrand	6	chr2	31508868	31508973	protein_coding	Prdm12	intron	ENSMUSG00000079466	ProperStrand	45	1	-17.4177
chr15	34466295	34466395	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n34466308	NonProperStrand	1	chr15	34418040	34418130	protein_coding	Hrsp12	intron	ENSMUSG00000022323	ProperStrand	1	1	-inf
chr15	85910737	85910789	protein_coding	Gramd4	intron	ENSMUSG00000035900	NonProperStrand	29	chr13	44869576	44869619	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-5.9107
chr10	128168929	128169061	protein_coding	Dgka	intron	ENSMUSG00000025357	ProperStrand	2	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-16.0837
chr17	39846718	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	74281339	74281359	LTR	IAPEz-int	ERVK	chr2IAPEz-int74276073	NonProperStrand	1	1	-inf
chr6	115807978	115808024	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	108	chr4	32639867	32639977	protein_coding	Bach2	intron	ENSMUSG00000040270	ProperStrand	119	1	-9.4677
chr2	5379295	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr12	41838884	41838970	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	64	1	-4.4248
chr15	58900526	58900560	protein_coding	Mtss1	intron	ENSMUSG00000022353	NonProperStrand	27	chr4	48648656	48648765	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	114	1	-12.3487
chr17	39847822	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	151660108	151660128	protein_coding	Hes3	utr3	ENSMUSG00000028946	ProperStrand	5	1	-3.2379
chr5	42710367	42710467	LINE	Lx3_Mus	L1	chr5Lx3_Mus42709921	NonProperStrand	1	chr7	47186439	47186529	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	15	1	-inf
chr5	148315308	148315325	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	79	chr8	106885146	106885247	protein_coding	Cmtm4	intron	ENSMUSG00000051578	ProperStrand	131	1	-9.9020
chr4	145805609	146173033	antisense	Gm13165	.	ENSMUSG00000086654	NonProperStrand	2	chr4	147156278	147156378	protein_coding	Gm13157	intron	ENSMUSG00000078495	NonProperStrand	1	1	-inf
chr4	132222333	132222423	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr11	97236861	97236961	protein_coding	Socs7	intron	ENSMUSG00000038485	NonProperStrand	32	1	-12.0932
chr16	54766000	54766090	LINE	L1MA9	L1	chr16L1MA954765954	NonProperStrand	1	chr16	54025543	54025643	LINE	Lx2B	L1	chr16Lx2B54023757	NonProperStrand	1	1	-inf
chr16	9236336	9236427	LINE	L1_Mus1	L1	chr16L1_Mus19231335	NonProperStrand	3	chr12	67665745	67665796	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	75	1	-17.9855
chr2	92977414	92977504	LTR	MT2A	ERVL	chr2MT2A92977329	NonProperStrand	1	chr2	92977815	92977915	LTR	ORR1B2	MaLR	chr2ORR1B292977724	NonProperStrand	1	1	-inf
chr17	39846656	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	113234685	113274630	processed_transcript	RP23-466I14.1	.	ENSMUSG00000093378	NonProperStrand	5	1	-3.1907
chr9	109078291	109082026	LTR	RMER16-int	ERVK	chr9RMER16-int109077612	ProperStrand	10	chr9	109078386	109082339	protein_coding	Fbxw13	intron	ENSMUSG00000049314	ProperStrand	6	5	-inf
chr7	18942322	18950505	LINE	L1Md_F2	L1	chr7L1Md_F218945199	ProperStrand	1	chr7	18950513	18950613	LINE	L1Md_F2	L1	chr7L1Md_F218950384	ProperStrand	1	1	-inf
chr16	42879793	42879846	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	325	chr3	9483342	9483405	protein_coding	Zfp704	intron	ENSMUSG00000040209	ProperStrand	961	1	-3.2647
chr12	117709898	117709936	DNA	RCHARR1	MER1_type	chr12RCHARR1117709676	ProperStrand	1	chr17	39846900	39846956	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39846462	39846495	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	79782483	79782500	protein_coding	2310011J03Rik	intron	ENSMUSG00000020133	NonProperStrand	1	1	-inf
chr7	143515133	143515223	LINE	L1MC4	L1	chr7L1MC4143515140	NonProperStrand	4	chr16	18256426	18256526	protein_coding	Dgcr8	intron	ENSMUSG00000022718	ProperStrand	60	1	-17.8201
chrX	149941432	149941548	LINE	L3	CR1	chrXL3149941077	NonProperStrand	1	chr17	39847280	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr1	185381817	185381884	LINE	Lx	L1	chr1Lx185381742	ProperStrand	2	chr1	185394372	185394395	LTR	IAPEz-int	ERVK	chr1IAPEz-int185389206	ProperStrand	8	1	-23.4058
chr8	64998608	64998626	LINE	L1_Mur3	L1	chr8L1_Mur364998290	ProperStrand	6	chr15	66898160	66898254	LTR	MTB_Mm	MaLR	chr15MTB_Mm66898038	NonProperStrand	1	1	-inf
chr9	47545062	47545187	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.5745
chr10	94461720	94461820	LTR	MTE2a	MaLR	chr10MTE2a94461701	ProperStrand	1	chr10	94329457	94329547	protein_coding	Plxnc1	intron	ENSMUSG00000074785	NonProperStrand	3	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr17	30875084	30875149	protein_coding	Dnahc8	intron	ENSMUSG00000033826	ProperStrand	94	1	-5.9225
chr17	39846414	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr15	78405803	78405832	SINE	RSINE1	B4	chr15RSINE178405745	ProperStrand	1	1	-inf
chr1	17152038	17152138	protein_coding	Gdap1	utr3	ENSMUSG00000025777	NonProperStrand	1	chr10	22388092	22388183	protein_coding	Slc2a12	intron	ENSMUSG00000037490	ProperStrand	1	1	-inf
chr13	94075919	94076029	protein_coding	Homer1	intron	ENSMUSG00000007617	ProperStrand	24	chr2	120724392	120724432	protein_coding	Ubr1	intron	ENSMUSG00000027272	ProperStrand	14	1	-16.8219
chr19	26794611	26794638	protein_coding	Smarca2	intron	ENSMUSG00000024921	ProperStrand	8	chr9	38401758	38401775	protein_coding	Olfr913	intron	ENSMUSG00000059189	ProperStrand	1	1	-inf
chr2	167092645	167092735	LTR	RLTR17	ERVK	chr2RLTR17167092380	ProperStrand	1	chr2	167092875	167092975	SINE	B2_Mm1a	B2	chr2B2_Mm1a167092776	ProperStrand	1	1	-inf
chr5	135532540	135532630	protein_coding-noncoding	Wbscr22	utr3	ENSMUSG00000005378	NonProperStrand	1	chr5	135532957	135533057	protein_coding	Wbscr22	intron	ENSMUSG00000005378	NonProperStrand	2	1	-inf
chr5	26850425	26850455	LTR	MLT1A1	MaLR	chr5MLT1A126850401	ProperStrand	1	chr5	26849816	26849897	LTR	RMER15	ERVL	chr5RMER1526849672	NonProperStrand	1	1	-inf
chr5	70473242	70473342	LINE	Lx3B	L1	chr5Lx3B70473260	NonProperStrand	1	chr5	70472919	70473009	LTR	RMER17C	ERVK	chr5RMER17C70472844	NonProperStrand	1	1	-inf
chr17	39847673	39847722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr12	17548081	17548363	SINE	B1_Mus2	Alu	chr12B1_Mus217548107	NonProperStrand	4	1	-3.7035
chr11	115936997	115937099	protein_coding-noncoding	Unc13d	utr3	ENSMUSG00000057948	ProperStrand	1	chr11	115937178	115937268	protein_coding	Unc13d	intron	ENSMUSG00000057948	ProperStrand	9	1	-inf
chr18	41947998	41948088	LINE	L1_Mus4	L1	chr18L1_Mus441947500	NonProperStrand	2	chr8	70463256	70463356	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	604	1	-14.8591
chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr19	41921566	41921638	protein_coding	Frat2	utr3	ENSMUSG00000047604	ProperStrand	1	1	-inf
chr17	39847659	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	34991653	34991669	protein_coding	Cep110	intron	ENSMUSG00000057110	ProperStrand	3	1	-4.3512
chr2	173272653	173272675	LTR	ORR1A3	MaLR	chr2ORR1A3173272493	ProperStrand	11	chr4	149064268	149064347	protein_coding	Pik3cd	intron	ENSMUSG00000039936	ProperStrand	144	1	-13.7311
chr5	53600866	53600916	protein_coding	Sel1l3	intron	ENSMUSG00000029189	ProperStrand	9	chr1	118411969	118412029	protein_coding	Cntnap5a	intron	ENSMUSG00000070695	ProperStrand	130	1	-14.3585
chr17	39842996	39843038	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr17	85013092	85013172	protein_coding	Plekhh2	intron	ENSMUSG00000040852	ProperStrand	89	1	-4.6238
chr9	45573270	45573404	LTR	MT2B	ERVL	chr9MT2B45573225	ProperStrand	2	chr4	132410863	132410881	protein_coding	Stx12	utr3	ENSMUSG00000028879	ProperStrand	11	1	-21.2279
chr2	18127884	18128007	protein_coding	Mllt10	intron	ENSMUSG00000026743	ProperStrand	47	chr6	141591344	141591372	protein_coding	Slco1b2	intron	ENSMUSG00000030236	NonProperStrand	24	1	-14.3720
chr4	53860707	53860774	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	chr4	84579555	84579609	protein_coding	Cntln	intron	ENSMUSG00000038070	NonProperStrand	76	1	-8.9530
chr11	80031011	80031064	protein_coding	Rhot1	intron	ENSMUSG00000017686	ProperStrand	27	chr11	80001772	80001835	protein_coding	Rnf135	intron	ENSMUSG00000020707	ProperStrand	16	2	-22.3180
chr6	125492708	125492822	LINE	L1_Mur3	L1	chr6L1_Mur3125492500	ProperStrand	1	chr17	39846593	39846616	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr15	86194872	86194928	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	301	chr14	11629868	11629914	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	1	-4.7088
chr11	97682714	97682802	protein_coding	Lasp1	intron	ENSMUSG00000038366	ProperStrand	126	chr12	109646904	109646966	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-6.3206
chr9	107959274	107959374	protein_coding-noncoding	Rnf123	utr3	ENSMUSG00000041528	ProperStrand	1	chr9	107959406	107959496	protein_coding	Rnf123	intron	ENSMUSG00000041528	ProperStrand	1	1	-inf
chr8	70310400	70311632	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	409	chr16	10239952	10240012	protein_coding	Atf7ip2	intron	ENSMUSG00000039200	ProperStrand	34	1	-9.3250
chr17	39846822	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	95460876	95460935	protein_coding	Paqr9	exon	ENSMUSG00000064225	NonProperStrand	1	1	-inf
chr10	40258579	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr11	120224582	120224672	protein_coding	Fscn2	intron	ENSMUSG00000025380	NonProperStrand	4	1	-10.9810
chr17	39847531	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	103752027	103752072	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n103751958	NonProperStrand	1	1	-inf
chr13	30895489	30895579	LINE	L1MEf	L1	chr13L1MEf30895484	ProperStrand	2	chr13	30895387	30895487	LINE	Lx2B	L1	chr13Lx2B30895145	NonProperStrand	2	2	-inf
chr2	30069086	30069405	SINE	B2_Mm1a	B2	chr2B2_Mm1a30069318	NonProperStrand	6	chr18	69610512	69610559	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	2	-20.7968
chr1	71068997	71069055	LINE	HAL1	L1	chr1HAL171068941	NonProperStrand	1	chr1	71074167	71074261	protein_coding	Bard1	utr3	ENSMUSG00000026196	ProperStrand	33	1	-inf
chr10	57780599	57780689	LINE	Lx3B	L1	chr10Lx3B57780428	NonProperStrand	1	chr10	57780342	57780442	LINE	Lx	L1	chr10Lx57780224	NonProperStrand	1	1	-inf
chr17	39846759	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	4926295	4928706	protein_coding	Mcm10	intron	ENSMUSG00000026669	NonProperStrand	4	2	-6.6967
chr5	146261022	146261221	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	69668854	69672301	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	2	-4.1047
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr7	105745541	105745567	protein_coding	2210018M11Rik	exon	ENSMUSG00000035401	ProperStrand	27	1	-8.1691
chr8	120747243	120748323	LINE	Lx7	L1	chr8Lx7120747135	NonProperStrand	1	chr8	120747283	120753379	SINE	B1_Mus1	Alu	chr8B1_Mus1120748278	NonProperStrand	1	1	-inf
chr12	84970962	84972998	LTR	MERVL-int	ERVL	chr12MERVL-int84966435	ProperStrand	1	chr17	39846583	39846651	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	95957052	95957152	DNA	MER97c	MER1_type?	chr2MER97c95957014	ProperStrand	1	chr2	95956862	95956953	LINE	L1Md_T	L1	chr2L1Md_T95955993	ProperStrand	1	1	-inf
chr2	85071861	85072109	LTR	RLTR20A	ERVK	chr2RLTR20A85071943	ProperStrand	2	chr8	72356540	72356661	protein_coding	Pbx4	utr5	ENSMUSG00000031860	NonProperStrand	116	1	-18.1882
chr11	109012011	109012039	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	53	chr14	24493383	24493452	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	1	-10.7508
chr17	39847170	39847213	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	82591424	82591440	protein_coding	Col4a3	intron	ENSMUSG00000079465	ProperStrand	3	1	-5.4882
chr3	22166341	22166399	LTR	RLTR1B	ERV1	chr3RLTR1B22166115	ProperStrand	1	chr18	65621423	65621494	protein_coding	Malt1	intron	ENSMUSG00000032688	ProperStrand	236	1	-inf
chr15	85876168	85876249	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n85876180	ProperStrand	1	chr15	85875749	85876165	Simple_repeat	(GA)n	Simple_repeat	chr15(GA)n85876115	ProperStrand	1	1	-inf
chr13	53218939	53219039	protein_coding	Ror2	intron	ENSMUSG00000021464	ProperStrand	160	chr8	119521984	119522074	protein_coding	Pkd1l2	exon	ENSMUSG00000034416	ProperStrand	121	2	-13.7456
chr16	20545169	20545259	SINE	B3A	B2	chr16B3A20545113	NonProperStrand	2	chr16	20544012	20544060	protein_coding	Ap2m1	utr3	ENSMUSG00000022841	ProperStrand	28	2	-inf
chr11	75669962	75670014	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	chr9	40803993	40804055	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-5.5426
chr9	44913423	44914707	protein_coding	Amica1	intron	ENSMUSG00000048534	NonProperStrand	6	chr9	44914774	44920662	protein_coding	Gm10684	intron	ENSMUSG00000074385	ProperStrand	14	1	-19.6103
chr1	134308172	134308280	LTR	ORR1C1	MaLR	chr1ORR1C1134307901	NonProperStrand	7	chr1	134307690	134307722	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n134307695	NonProperStrand	5	1	-22.8469
chr17	70963685	70963784	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr6	65793078	65793111	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-3.8422
chr16	48589266	48589343	protein_coding	Morc1	intron	ENSMUSG00000022652	NonProperStrand	24	chr15	93273932	93273971	protein_coding	Pphln1	intron	ENSMUSG00000036167	NonProperStrand	55	1	-14.0548
chr7	25745583	25745673	Low_complexity	C-rich	Low_complexity	chr7C-rich25745584	NonProperStrand	1	chr7	25745433	25745533	Simple_repeat	(CATAC)n	Simple_repeat	chr7(CATAC)n25745429	NonProperStrand	1	1	-inf
chr15	36608615	36608686	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	83	chr4	3834535	3834596	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	1	-11.3699
chr2	22744837	22744912	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr14	40946592	40946651	LTR	RLTR6_Mm	ERV1	chr14RLTR6_Mm40946342	ProperStrand	1	1	-inf
chr5	41666512	41666533	LINE	L1Md_F2	L1	chr5L1Md_F241666043	ProperStrand	1	chr11	12275074	12275157	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-inf
chr2	121137333	121137367	protein_coding	Ppip5k1	utr3	ENSMUSG00000033526	NonProperStrand	22	chr8	123106405	123106449	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	1	-8.9499
chr11	109011655	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	150638469	150642713	protein_coding	Pygb	intron	ENSMUSG00000033059	NonProperStrand	63	3	-13.8275
chr17	66130682	66130782	SINE	B1_Mur3	Alu	chr17B1_Mur366130665	ProperStrand	1	chr17	66130771	66130861	SINE	B4	B4	chr17B466130797	NonProperStrand	1	1	-inf
chr8	89028432	89028507	protein_coding	Abcc12	utr3	ENSMUSG00000036872	ProperStrand	128	chr7	116217683	116217760	protein_coding	Ric3	intron	ENSMUSG00000048330	ProperStrand	107	1	-9.3405
chrY	884221	884240	Low_complexity	CT-rich	Low_complexity	chrYCT-rich884226	NonProperStrand	2	chr3	58267422	58267543	protein_coding	Tsc22d2	utr3	ENSMUSG00000027806	ProperStrand	4	2	-inf
chr17	39846721	39846840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	3511379	3511414	protein_coding	Bambi	exon	ENSMUSG00000024232	ProperStrand	4	1	-3.6552
chr3	101589910	101590491	LTR	MTD	MaLR	chr3MTD101589758	ProperStrand	6	chr3	101590511	101590601	LTR	RMER5	ERV1	chr3RMER5101590429	NonProperStrand	7	5	-inf
chr7	75779799	75779881	LTR	MLT1A1	MaLR	chr7MLT1A175779777	ProperStrand	1	chr10	81079880	81079952	protein_coding	BC025920	intron	ENSMUSG00000074862	ProperStrand	52	1	-inf
chr3	41475320	41477842	protein_coding-noncoding	Sclt1	utr3	ENSMUSG00000059834	ProperStrand	16	chr3	41475719	41481870	protein_coding	Sclt1	intron	ENSMUSG00000059834	ProperStrand	236	2	-19.5249
chr9	39673238	39673328	Simple_repeat	(CAGAGA)n	Simple_repeat	chr9(CAGAGA)n39673162	NonProperStrand	1	chr1	32444711	32444811	protein_coding	Khdrbs2	intron	ENSMUSG00000026058	ProperStrand	15	1	-inf
chr2	47654582	47654682	LINE	L1Md_F2	L1	chr2L1Md_F247654073	ProperStrand	1	chr2	47659856	47659946	LINE	Lx8	L1	chr2Lx847659118	NonProperStrand	1	1	-inf
chr2	159251499	159251599	LINE	Lx	L1	chr2Lx159251451	NonProperStrand	1	chr2	159251244	159251334	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n159251159	ProperStrand	1	1	-inf
chr9	123462100	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	86378754	86378803	protein_coding	Tia1	intron	ENSMUSG00000071337	ProperStrand	14	1	-3.7266
chr12	16983388	16983444	protein_coding	Rock2	intron	ENSMUSG00000020580	ProperStrand	46	chr18	75187433	75187496	protein_coding	Dym	intron	ENSMUSG00000035765	ProperStrand	478	1	-8.4056
chr3	54653577	54653667	LTR	IAPEz-int	ERVK	chr3IAPEz-int54653453	NonProperStrand	1	chr3	54653256	54653356	LTR	IAPLTR1_Mm	ERVK	chr3IAPLTR1_Mm54653101	NonProperStrand	1	1	-inf
chr1	39927111	39927181	LINE	L1MEe	L1	chr1L1MEe39927021	NonProperStrand	1	chr12	17724234	17724292	protein_coding	Hpcal1	intron	ENSMUSG00000071379	ProperStrand	332	1	-inf
chr3	31025174	31026297	LINE	L1MB4	L1	chr3L1MB431025058	NonProperStrand	7	chr3	31029526	31031138	LTR	ORR1E	MaLR	chr3ORR1E31030842	ProperStrand	7	7	-inf
chr15	75469125	75469225	LTR	RMER16-int	ERVK	chr15RMER16-int75469140	ProperStrand	1	chr15	75468894	75468984	SINE	B2_Mm1t	B2	chr15B2_Mm1t75468809	ProperStrand	1	1	-inf
chr11	6951667	6951757	LTR	MER34A	ERV1	chr11MER34A6951621	ProperStrand	1	chr11	6952062	6952162	LTR	MLT1C	MaLR	chr11MLT1C6952044	NonProperStrand	1	1	-inf
chr18	82987491	82987508	LTR	MTD	MaLR	chr18MTD82987382	ProperStrand	1	chr2	59632997	59633111	protein_coding	Tanc1	intron	ENSMUSG00000035168	ProperStrand	142	1	-inf
chr11	102310636	102310689	LINE	L3	CR1	chr11L3102310378	ProperStrand	2	chr19	30064544	30064626	LINE	Lx9	L1	chr19Lx930064561	ProperStrand	1	1	-inf
chr7	136980003	136980053	SINE	B3	B2	chr7B3136979973	ProperStrand	1	chr7	136980089	136980118	Simple_repeat	(TCTCCC)n	Simple_repeat	chr7(TCTCCC)n136980078	ProperStrand	1	1	-inf
chr2	135850836	135850936	LINE	L1M4	L1	chr2L1M4135850826	NonProperStrand	2	chr2	135850744	135850834	SINE	B1_Mur1	Alu	chr2B1_Mur1135850653	ProperStrand	2	2	-inf
chr15	77775159	77775233	protein_coding	Foxred2	intron	ENSMUSG00000016552	ProperStrand	71	chr6	148227026	148227075	protein_coding	Tmtc1	intron	ENSMUSG00000030306	ProperStrand	64	1	-11.5542
chr7	13028891	13029093	SINE	B4A	B4	chr7B4A13028817	ProperStrand	31	chr11	3977648	3977698	protein_coding	Sec14l3	utr3	ENSMUSG00000054986	ProperStrand	11	1	-16.8395
chr3	51317106	51317206	SINE	PB1D7	Alu	chr3PB1D751317129	NonProperStrand	5	chr3	51317213	51317303	SINE	RSINE1	B4	chr3RSINE151317234	NonProperStrand	5	5	-inf
chr15	92354975	92355062	protein_coding	Pdzrn4	intron	ENSMUSG00000036218	ProperStrand	35	chr2	42155041	42155061	protein_coding	Lrp1b	intron	ENSMUSG00000049252	NonProperStrand	57	1	-13.2166
chr9	66103306	66103383	protein_coding	Dapk2	intron	ENSMUSG00000032380	NonProperStrand	28	chr2	120459491	120459515	protein_coding	Stard9	intron	ENSMUSG00000033705	ProperStrand	5	1	-19.0193
chr1	192745612	192745643	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	48	chr10	62598290	62598311	protein_coding	Mypn	intron	ENSMUSG00000020067	ProperStrand	87	2	-18.4540
chr1	114391998	114392098	LINE	L1_Mur2	L1	chr1L1_Mur2114392003	NonProperStrand	1	chr1	114392151	114392241	SINE	B1_Mus1	Alu	chr1B1_Mus1114392151	NonProperStrand	1	1	-inf
chr1	36896554	36896665	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	chr5	92086886	92086931	pseudogene	Gm15710	.	ENSMUSG00000084111	NonProperStrand	50	1	-9.7666
chr4	123372455	123374376	LINE	L1M5	L1	chr4L1M5123373890	ProperStrand	1	chr4	123374410	123374788	Simple_repeat	(GA)n	Simple_repeat	chr4(GA)n123374714	NonProperStrand	2	1	-inf
chr2	102829380	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	175	chr9	118674951	118674995	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-3.9120
chrX	38539322	38539412	LINE	L1Md_A	L1	chrXL1Md_A38536611	NonProperStrand	1	chrX	38539628	38539728	LINE	Lx7	L1	chrXLx738539645	ProperStrand	1	1	-inf
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	49	chr16	35981720	35981763	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	155	2	-16.5615
chr11	10887216	10887306	LINE	L1Md_F	L1	chr11L1Md_F10887211	ProperStrand	1	chr11	10886857	10886957	LINE	L1_Mus2	L1	chr11L1_Mus210886692	ProperStrand	1	1	-inf
chr11	120424931	120425017	protein_coding	P4hb	exon	ENSMUSG00000025130	ProperStrand	7	chr1	162546140	162546170	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	169	1	-14.3728
chr7	100649112	100649175	LINE	L1MDa	L1	chr7L1MDa100649130	NonProperStrand	1	chr7	111072050	111072120	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-inf
chr5	135042199	135042300	LTR	RMER5	ERV1	chr5RMER5135042227	ProperStrand	7	chr5	135042111	135042201	SINE	B3	B2	chr5B3135042002	ProperStrand	7	7	-inf
chr17	12922871	12922919	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	57	chr9	40803582	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-7.5418
chr17	39846718	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	143943231	143943324	Simple_repeat	(TAGA)n	Simple_repeat	chr2(TAGA)n143943119	ProperStrand	2	1	-5.3533
chr10	75925552	75925668	protein_coding	Ybey	utr3	ENSMUSG00000033126	ProperStrand	25	chr18	84356136	84356154	protein_coding	Zfp407	intron	ENSMUSG00000048410	NonProperStrand	15	1	-16.6150
chr17	24720327	24720980	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	271	chr13	44869577	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-3.3235
chr2	5379289	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr2	127341652	127341696	protein_coding	Kcnip3	intron	ENSMUSG00000079056	NonProperStrand	14	1	-7.4379
chr8	13938058	13938098	protein_coding	Fbxo25	intron	ENSMUSG00000038365	ProperStrand	46	chr10	33922537	33922629	protein_coding	Dse	intron	ENSMUSG00000039497	ProperStrand	2	1	-20.3205
chr11	104534107	104534202	SINE	RSINE1	B4	chr11RSINE1104534076	ProperStrand	1	chr4	53860727	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-inf
chr9	65903123	65903164	LTR	RodERV21-int	ERV1	chr9RodERV21-int65903032	ProperStrand	1	chr2	146312235	146312344	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	ProperStrand	101	1	-inf
chr9	53115734	53115833	protein_coding	Exph5	intron	ENSMUSG00000034584	NonProperStrand	6	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.2270
chr7	84832652	84832742	LINE	L1_Mus1	L1	chr7L1_Mus184832517	NonProperStrand	1	chr7	84832845	84832945	LINE	L1_Mus4	L1	chr7L1_Mus484832806	NonProperStrand	1	1	-inf
chr18	18421987	18422087	SINE	RSINE1	B4	chr18RSINE118421990	NonProperStrand	1	chr18	18422334	18422424	Simple_repeat	(TCTA)n	Simple_repeat	chr18(TCTA)n18422355	NonProperStrand	1	1	-inf
chr16	4556313	4556438	protein_coding	Tfap4	intron	ENSMUSG00000005718	ProperStrand	69	chr13	97190563	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.8518
chr19	21649914	21649962	SINE	B2_Mm2	B2	chr19B2_Mm221649895	ProperStrand	1	chr2	128134276	128134335	lincRNA	Gm14005	intron	ENSMUSG00000074813	NonProperStrand	116	1	-inf
chr6	125142622	125142805	protein_coding-noncoding	Mrpl51	utr5	ENSMUSG00000030335	ProperStrand	4	chr6	125142801	125142911	protein_coding	Mrpl51	intron	ENSMUSG00000030335	ProperStrand	8	3	-inf
chr10	59348219	59348239	protein_coding	Dnajb12	intron	ENSMUSG00000020109	ProperStrand	15	chr13	36225734	36225823	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	1	-11.7606
chr2	122028882	122028899	protein_coding	4933406J08Rik	intron	ENSMUSG00000027229	ProperStrand	39	chr5	30732637	30732685	protein_coding	Otof	intron	ENSMUSG00000062372	NonProperStrand	98	1	-11.9059
chr8	35469998	35470014	LTR	MER31B	ERV1	chr8MER31B35469995	NonProperStrand	1	chr9	123461991	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	112578194	112578267	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr2	26440063	26440126	protein_coding	Egfl7	intron	ENSMUSG00000026921	NonProperStrand	23	1	-6.0765
chr5	65312409	65312426	LINE	L1_Mus3	L1	chr5L1_Mus365312165	NonProperStrand	8	chr6	113150114	113150161	LINE	L1Md_F2	L1	chr6L1Md_F2113149400	NonProperStrand	2	1	-inf
chr10	95314101	95314126	SINE	B1F2	Alu	chr10B1F295314008	NonProperStrand	1	chr10	95316721	95316786	SINE	B2_Mm1t	B2	chr10B2_Mm1t95316686	ProperStrand	1	1	-inf
chr5	146261173	146261203	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr4	107673932	107673952	protein_coding	Slc1a7	intron	ENSMUSG00000008932	ProperStrand	6	2	-15.7178
chr12	5169327	5169415	protein_coding	Klhl29	intron	ENSMUSG00000020627	ProperStrand	45	chr8	75043849	75043889	protein_coding	Med26	intron	ENSMUSG00000045248	NonProperStrand	147	1	-10.8035
chr9	109082229	109082255	protein_coding	Fbxw13	intron	ENSMUSG00000049314	ProperStrand	6	chr9	70554623	70554718	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-15.9973
chr4	123394266	123395095	protein_coding	Ndufs5	intron	ENSMUSG00000028648	ProperStrand	2	chr14	11827512	11827602	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	478	2	-inf
chr10	17124520	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr11	31102673	31102704	LINE	Lx2	L1	chr11Lx231102415	NonProperStrand	1	1	-inf
chrX	93406291	93406365	LINE	Lx9	L1	chrXLx993406154	NonProperStrand	2	chr11	78059093	78059263	protein_coding	Supt6h	utr5	ENSMUSG00000002052	NonProperStrand	41	1	-20.9076
chr5	64808401	64808483	LTR	ORR1A2-int	MaLR	chr5ORR1A2-int64807854	NonProperStrand	15	chr11	29711703	29711749	protein_coding	Eml6	intron	ENSMUSG00000044072	NonProperStrand	99	1	-13.8375
chr7	47188445	47188516	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	74	chr15	99150965	99151046	protein_coding	Fmnl3	intron	ENSMUSG00000023008	NonProperStrand	98	1	-10.6146
chr5	45242487	45242503	LINE	L1_Mus1	L1	chr5L1_Mus145237005	ProperStrand	1	chr14	65844785	65844917	protein_coding	Fzd3	intron	ENSMUSG00000007989	NonProperStrand	34	1	-inf
chr17	39847460	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chrX	53706196	53713337	protein_coding	Ddx26b	intron	ENSMUSG00000035967	ProperStrand	1	1	-inf
chr2	73091395	73091485	LINE	L1Md_F2	L1	chr2L1Md_F273091272	NonProperStrand	2	chr7	100607953	100608053	LTR	MLT1F2	MaLR	chr7MLT1F2100607949	ProperStrand	3	2	-inf
chr10	28125219	28125304	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	151	chr7	138889125	138889200	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	293	1	-7.0078
chr11	99466062	99466162	SINE	B4A	B4	chr11B4A99466002	NonProperStrand	1	chr11	99465854	99465944	SINE	PB1D10	Alu	chr11PB1D1099465810	NonProperStrand	1	1	-inf
chr17	39843748	39843765	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	76050642	76050729	protein_coding	Glod4	intron	ENSMUSG00000017286	ProperStrand	22	1	-4.8672
chr9	123461883	123461967	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr3	94559537	94559611	pseudogene	Gm15264	.	ENSMUSG00000081355	ProperStrand	9	1	-4.5963
chr6	124773056	124773156	protein_coding-noncoding	Usp5	utr3	ENSMUSG00000038429	NonProperStrand	2	chr5	17818177	17818267	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	156	1	-17.4943
chr2	22744837	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	89402287	89402365	protein_coding	Chchd6	intron	ENSMUSG00000030086	ProperStrand	188	1	-4.5805
chr16	30313423	30313545	protein_coding	Atp13a3	utr3	ENSMUSG00000022533	ProperStrand	59	chr5	104209915	104210102	protein_coding	Aff1	intron	ENSMUSG00000029313	NonProperStrand	7	1	-16.5263
chr19	42183193	42183293	protein_coding	Pi4k2a	intron	ENSMUSG00000025178	ProperStrand	16	chr19	57870339	57870429	protein_coding	Atrnl1	intron	ENSMUSG00000054843	ProperStrand	65	1	-14.5594
chr17	39846774	39846800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	80044976	80045095	LTR	ORR1D1	MaLR	chr7ORR1D180044873	ProperStrand	3	1	-4.3017
chrX	73913131	73913150	LTR	RMER19C	ERVK	chrXRMER19C73912813	NonProperStrand	1	chr5	144145141	144145233	protein_coding	Grid2ip	intron	ENSMUSG00000010825	ProperStrand	61	1	-inf
chr5	18333562	18333633	LINE	L1Md_A	L1	chr5L1Md_A18329194	NonProperStrand	1	chr5	18335686	18335755	LINE	L1Md_A	L1	chr5L1Md_A18335034	NonProperStrand	1	1	-inf
chr17	39846414	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	108914255	108914327	protein_coding	Calr4	intron	ENSMUSG00000028558	ProperStrand	2	1	-5.3533
chr8	11506764	11506800	protein_coding	Carkd	exon	ENSMUSG00000031505	ProperStrand	13	chr3	79208964	79209057	protein_coding	Gm17359	intron	ENSMUSG00000091685	NonProperStrand	22	2	-inf
chr17	39847317	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	125467849	125467903	SINE	B1_Mus1	Alu	chr6B1_Mus1125467803	NonProperStrand	1	1	-inf
chr7	136941233	136941326	DNA	URR1A	MER1_type	chr7URR1A136941187	ProperStrand	1	chr2	113653545	113653567	protein_coding	Scg5	intron	ENSMUSG00000023236	NonProperStrand	7	1	-inf
chr7	27309677	27309721	LINE	Lx8	L1	chr7Lx827309506	NonProperStrand	1	chr17	39846932	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	20710895	20710933	LINE	L1_Mur3	L1	chrXL1_Mur320710627	ProperStrand	1	chr1	63178679	63178748	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	75	1	-inf
chr13	94799032	94799170	DNA	RCHARR1	MER1_type	chr13RCHARR194799042	NonProperStrand	3	chr13	94798896	94799067	SINE	B4	B4	chr13B494798767	NonProperStrand	3	3	-inf
chr3	14776297	14776313	protein_coding	Car1	exon	ENSMUSG00000027556	NonProperStrand	1	chr5	122802191	122802870	protein_coding	Rad9b	intron	ENSMUSG00000038569	ProperStrand	44	1	-inf
chr17	39847990	39848036	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	41274237	41274340	LTR	MTD	MaLR	chr4MTD41274076	ProperStrand	1	1	-inf
chr17	39847531	39847599	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr16	21950796	21950843	SINE	B4A	B4	chr16B4A21950784	NonProperStrand	1	1	-inf
chr17	88057310	88057381	LTR	LTRIS4	ERV1	chr17LTRIS488057249	ProperStrand	1	chr17	88055694	88055738	LTR	RMER16-int	ERVK	chr17RMER16-int88055642	NonProperStrand	2	1	-inf
chr13	89908350	89908372	lincRNA	Gm4117	intron	ENSMUSG00000089940	NonProperStrand	11	chr4	135345671	135345703	protein_coding	Myom3	intron	ENSMUSG00000037139	NonProperStrand	91	1	-14.6583
chr17	78691217	78691340	protein_coding	Crim1	intron	ENSMUSG00000024074	NonProperStrand	26	chr4	141703032	141703058	protein_coding	Kazn	exon	ENSMUSG00000040606	ProperStrand	60	1	-13.7184
chr3	86920291	86920376	protein_coding	Kirrel	intron	ENSMUSG00000041734	ProperStrand	52	chr13	97190596	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.4010
chr3	132745755	132745831	protein_coding	Gstcd	intron	ENSMUSG00000028018	NonProperStrand	33	chr18	76129308	76129370	protein_coding	Zbtb7c	intron	ENSMUSG00000044646	ProperStrand	68	1	-12.9791
chr18	67149884	67149974	SINE	B4	B4	chr18B467149781	ProperStrand	1	chr18	67149652	67149752	Simple_repeat	(TG)n	Simple_repeat	chr18(TG)n67149646	NonProperStrand	1	1	-inf
chr4	137637834	137637856	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	463	chr18	80835284	80835409	protein_coding	Nfatc1	intron	ENSMUSG00000033016	ProperStrand	40	1	-8.7500
chr11	101489375	101489465	protein_coding-noncoding	Rdm1	utr5	ENSMUSG00000010362	NonProperStrand	4	chr11	101489272	101489372	protein_coding	Rdm1	utr5	ENSMUSG00000010362	NonProperStrand	23	4	-inf
chr17	39843107	39847916	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	39847054	39848685	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	10587	-inf
chr9	27057590	27057655	LINE	Lx5	L1	chr9Lx527057470	ProperStrand	1	chr1	125431886	125431973	protein_coding	Dpp10	intron	ENSMUSG00000036815	ProperStrand	52	1	-inf
chr7	140955818	140955886	protein_coding	Dhx32	intron	ENSMUSG00000030986	ProperStrand	21	chr9	40803621	40803670	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-9.5560
chr2	39306335	39306435	LTR	RLTR1C	ERV1	chr2RLTR1C39306156	ProperStrand	1	chr2	39305843	39305933	SINE	B1_Mus2	Alu	chr2B1_Mus239305823	NonProperStrand	1	1	-inf
chr7	5409239	5409329	LINE	L1_Mus1	L1	chr7L1_Mus15409059	NonProperStrand	2	chr6	58615941	58616041	protein_coding	Abcg2	intron	ENSMUSG00000029802	ProperStrand	28	1	-21.0040
chr16	18550916	18550961	protein_coding	Gnb1l	intron	ENSMUSG00000000884	ProperStrand	89	chr2	72940650	72940705	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	2	-16.9408
chr9	31303801	31303828	LINE	L1M4	L1	chr9L1M431303663	NonProperStrand	1	chr9	31304306	31304415	LTR	MLT1A1	MaLR	chr9MLT1A131304054	NonProperStrand	1	1	-inf
chr3	66759200	66759300	LTR	ORR1E	MaLR	chr3ORR1E66759132	ProperStrand	1	chr3	66758904	66758994	SINE	B3	B2	chr3B366758802	ProperStrand	1	1	-inf
chr19	43877073	43877178	protein_coding	Abcc2	intron	ENSMUSG00000025194	NonProperStrand	51	chr5	31244202	31244252	protein_coding	Cgref1	intron	ENSMUSG00000029161	NonProperStrand	4	1	-18.2339
chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	chr4	101424294	101424313	protein_coding	Lepr	intron	ENSMUSG00000057722	NonProperStrand	24	1	-6.3454
chr5	122317201	122319780	protein_coding	Cux2	exon	ENSMUSG00000042589	NonProperStrand	133	chr5	122284813	122284903	protein_coding	Sh2b3	intron	ENSMUSG00000042594	NonProperStrand	14	1	-13.3878
chr13	3393186	3393286	LTR	RLTR45-int	ERVK	chr13RLTR45-int3393185	ProperStrand	1	chr13	3392978	3393068	LTR	RLTR45	ERVK	chr13RLTR453392711	ProperStrand	1	1	-inf
chr13	111489807	111489849	LINE	Lx8	L1	chr13Lx8111488932	ProperStrand	7	chr6	134459321	134459354	protein_coding	Lrp6	intron	ENSMUSG00000030201	ProperStrand	57	1	-16.5751
chr6	114863109	114863133	protein_coding	Vgll4	intron	ENSMUSG00000030315	ProperStrand	98	chr9	46030415	46030528	protein_coding	Sik3	utr3	ENSMUSG00000034135	ProperStrand	53	1	-11.2861
chr11	12346804	12346894	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	chr11	48801731	48801831	protein_coding	Olfr56	intron	ENSMUSG00000040328	ProperStrand	237	1	-6.3170
chr17	55652260	55652286	protein_coding	St6gal2	utr3	ENSMUSG00000024172	NonProperStrand	4	chr14	33356909	33356945	protein_coding	Ercc6	intron	ENSMUSG00000054051	ProperStrand	29	1	-19.0298
chr11	116757704	116757744	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	44	chr11	85207337	85207421	protein_coding	Bcas3	intron	ENSMUSG00000059439	NonProperStrand	49	1	-13.0576
chr2	32158517	32158613	protein_coding	Golga2	intron	ENSMUSG00000002546	ProperStrand	57	chr9	116865366	116865384	protein_coding	Rbms3	intron	ENSMUSG00000039607	ProperStrand	22	1	-14.1637
chr5	53890613	53890713	DNA	RCHARR1	MER1_type	chr5RCHARR153890639	NonProperStrand	2	chr5	53890507	53890597	LTR	RMER17B	ERVK	chr5RMER17B53890486	NonProperStrand	2	2	-inf
chr7	89954937	89955041	LINE	Lx5	L1	chr7Lx589954450	ProperStrand	3	chr17	26182574	26184180	protein_coding	Rab11fip3	intron	ENSMUSG00000037098	ProperStrand	10	1	-20.3377
chr8	72152705	72152751	LINE	Lx	L1	chr8Lx72150141	NonProperStrand	8	chr18	79065673	79065738	protein_coding	Setbp1	intron	ENSMUSG00000024548	ProperStrand	76	1	-15.6973
chr2	73012736	73012767	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	76	chr7	4327566	4327587	protein_coding	Gp6	intron	ENSMUSG00000078810	NonProperStrand	2	1	-19.0294
chr1	100180180	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr16	90112841	90112901	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	1	-4.9929
chr9	21548263	21548324	protein_coding	Ldlr	intron	ENSMUSG00000032193	ProperStrand	19	chr7	38219497	38219549	protein_coding	Zfp536	intron	ENSMUSG00000043456	ProperStrand	33	1	-15.5729
chr12	108114798	108114871	lincRNA	1700013N06Rik	intron	ENSMUSG00000085801	NonProperStrand	30	chr2	126758899	126758963	protein_coding	2010106G01Rik	utr5	ENSMUSG00000027366	NonProperStrand	22	1	-15.4715
chr17	39848486	39848576	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr1	75212690	75212790	protein_coding	Tuba4a	exon	ENSMUSG00000026202	ProperStrand	7	1	-5.7189
chr9	112278213	112278567	LINE	L1_Mus1	L1	chr9L1_Mus1112278055	ProperStrand	1	chr17	39846660	39846747	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847636	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	73090482	73090550	SINE	B3	B2	chr2B373090371	NonProperStrand	1	1	-inf
chr11	120485330	120485373	protein_coding	Sirt7	utr3	ENSMUSG00000025138	NonProperStrand	1	chr11	120488489	120488528	protein_coding	Mafg	utr3	ENSMUSG00000051510	NonProperStrand	22	1	-inf
chr7	134944906	134944996	protein_coding-noncoding	Hsd3b7	utr5	ENSMUSG00000042289	NonProperStrand	1	chr7	134944319	134944419	protein_coding	Hsd3b7	intron	ENSMUSG00000042289	NonProperStrand	1	1	-inf
chr17	39848672	39848781	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	chr2	27539805	27539843	protein_coding	Rxra	intron	ENSMUSG00000015846	NonProperStrand	11	1	-4.7901
chr6	3201470	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr3	96332734	96332760	protein_coding	Hfe2	utr3	ENSMUSG00000038403	ProperStrand	9	1	-6.5801
chr15	22196056	22196156	LINE	L1M2	L1	chr15L1M222195991	ProperStrand	1	chr15	22196216	22196306	SINE	B3A	B2	chr15B3A22196222	ProperStrand	1	1	-inf
chrX	140475629	140475697	LINE	L1_Mus1	L1	chrXL1_Mus1140474010	NonProperStrand	7	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.1121
chr9	30967777	30967848	protein_coding	Aplp2	intron	ENSMUSG00000031996	ProperStrand	20	chr16	20687246	20687396	protein_coding	Eif4g1	exon	ENSMUSG00000045983	ProperStrand	123	1	-12.8090
chr7	109605031	109605097	protein_coding	Rrm1	intron	ENSMUSG00000030978	NonProperStrand	23	chr15	8148326	8148386	protein_coding	2410089E03Rik	intron	ENSMUSG00000039801	ProperStrand	47	1	-14.4601
chr4	141582882	141582943	antisense	4930455G09Rik	.	ENSMUSG00000085761	NonProperStrand	16	chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	143	1	-12.9673
chr5	86112650	86112672	LINE	L1Md_T	L1	chr5L1Md_T86109057	ProperStrand	3	chr9	59470223	59470310	protein_coding	Parp6	utr5	ENSMUSG00000025237	NonProperStrand	38	1	-19.2637
chr17	39846647	39846703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	14307884	14307903	SINE	B3A	B2	chr1B3A14307770	NonProperStrand	1	1	-inf
chr13	48967356	48967609	antisense	Gm8619	.	ENSMUSG00000086889	NonProperStrand	17	chr13	48934017	48949291	protein_coding	Phf2	intron	ENSMUSG00000038025	ProperStrand	92	8	-20.0945
chr4	41116654	41116670	protein_coding	Ube2r2	intron	ENSMUSG00000036241	NonProperStrand	66	chr13	97190571	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.9376
chr9	65042295	65042395	Low_complexity	GA-rich	Low_complexity	chr9GA-rich65042269	ProperStrand	1	chr9	65042192	65042282	SINE	PB1D10	Alu	chr9PB1D1065042190	ProperStrand	1	1	-inf
chr6	113240475	113240561	protein_coding	Cpne9	intron	ENSMUSG00000030270	NonProperStrand	1	chr10	80249185	80249237	protein_coding	Dot1l	exon	ENSMUSG00000061589	ProperStrand	91	1	-inf
chr13	104834722	104834803	protein_coding	Nln	intron	ENSMUSG00000021710	NonProperStrand	18	chr19	40384073	40384144	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	244	1	-11.6530
chr8	85091145	85091191	LINE	Lx3A	L1	chr8Lx3A85090962	ProperStrand	1	chr17	39846818	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr14	37126013	37127614	LINE	L1M4c	L1	chr14L1M4c37125805	ProperStrand	2	chr9	21008743	21008764	protein_coding	Pde4a	intron	ENSMUSG00000032177	ProperStrand	9	1	-inf
chr1	119548879	119548948	LINE	L1_Mus1	L1	chr1L1_Mus1119547551	NonProperStrand	3	chr3	27150803	27150841	protein_coding	Nceh1	intron	ENSMUSG00000027698	NonProperStrand	62	1	-18.2512
chr5	24394415	24394502	protein_coding	Prkag2	intron	ENSMUSG00000028944	NonProperStrand	128	chr13	97190561	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	2	-6.2289
chr9	21027218	21027432	SINE	B1_Mus2	Alu	chr9B1_Mus221027249	NonProperStrand	1	chr13	97190601	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr9	65486244	65486295	protein_coding	Rbpms2	intron	ENSMUSG00000032387	ProperStrand	6	chr13	97190562	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-9.8248
chr2	151553189	151554644	protein_coding-noncoding	Psmf1	utr3	ENSMUSG00000032869	NonProperStrand	6	chr2	151545979	151553191	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	58	6	-inf
chr15	103328632	103328738	protein_coding	Nckap1l	utr3	ENSMUSG00000022488	NonProperStrand	10	chr9	123462082	123462112	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-4.3847
chr17	39848162	39848201	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	105819487	105819562	protein_coding	Col6a5	intron	ENSMUSG00000091345	ProperStrand	15	1	-3.9151
chr13	95517531	95517563	LTR	MT2B	ERVL	chr13MT2B95517462	ProperStrand	1	chr11	115523589	115523656	protein_coding	Grb2	intron	ENSMUSG00000059923	ProperStrand	75	1	-inf
chr3	88082055	88083983	protein_coding-noncoding	Rhbg	utr3	ENSMUSG00000001417	NonProperStrand	1	chr3	88083971	88086202	protein_coding	1700021C14Rik	intron	ENSMUSG00000010538	NonProperStrand	23	1	-inf
chr17	22197954	22198032	protein_coding	Zfp943	intron	ENSMUSG00000053347	ProperStrand	7	chr12	21297867	21297891	protein_coding	Cpsf3	intron	ENSMUSG00000054309	ProperStrand	25	1	-18.4558
chr2	82306368	82306458	LTR	ETnERV2-int	ERVK	chr2ETnERV2-int82306312	NonProperStrand	2	chr2	82306220	82306320	LTR	RMER16-int	ERVK	chr2RMER16-int82306179	NonProperStrand	2	2	-inf
chr17	39846759	39846785	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	63677058	63677192	LTR	IAPEz-int	ERVK	chr2IAPEz-int63676523	NonProperStrand	2	2	-inf
chr17	39843819	39843882	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	74721107	74721176	protein_coding	Srr	utr3	ENSMUSG00000001323	ProperStrand	6	1	-7.5378
chr4	118489188	118489278	LINE	L1VL2	L1	chr4L1VL2118488815	NonProperStrand	1	chr4	118488694	118488794	Simple_repeat	(GA)n	Simple_repeat	chr4(GA)n118488710	NonProperStrand	1	1	-inf
chr16	13416241	13416341	protein_coding	Mkl2	utr3	ENSMUSG00000009569	NonProperStrand	14	chr2	4955711	4955801	protein_coding	Optn	intron	ENSMUSG00000026672	NonProperStrand	2	1	-19.7109
chr19	27786563	27786663	LINE	L1Md_F2	L1	chr19L1Md_F227785759	NonProperStrand	3	chr19	27786681	27793614	LINE	L1Md_F2	L1	chr19L1Md_F227788722	NonProperStrand	3	3	-inf
chr12	55068223	55068313	protein_coding	Npas3	intron	ENSMUSG00000021010	NonProperStrand	139	chr16	20717949	20718878	protein_coding	Polr2h	intron	ENSMUSG00000021018	ProperStrand	10	2	-21.6241
chr17	39847207	39847319	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr19	37329109	37329135	LTR	MER77	ERVL	chr19MER7737329103	ProperStrand	2	1	-6.5615
chr3	36602895	36604418	LINE	L1Md_A	L1	chr3L1Md_A36600350	ProperStrand	1	chr3	36607578	36607630	SINE	B4	B4	chr3B436607493	ProperStrand	1	1	-inf
chr8	61254978	61255041	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	198	chr9	58525473	58525527	protein_coding	2410076I21Rik	intron	ENSMUSG00000074269	ProperStrand	29	1	-11.0966
chr17	71845429	71845535	protein_coding	Ndc80	utr3	ENSMUSG00000024056	NonProperStrand	4	chr9	123462037	123462078	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-6.3300
chr10	40283993	40284044	LTR	IAPEY3-int	ERVK	chr10IAPEY3-int40283401	ProperStrand	1	chr17	39846415	39846459	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chrX	19374451	19374483	LINE	L1Md_A	L1	chrXL1Md_A19374087	NonProperStrand	1	chr9	123461915	123461957	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39848177	39848352	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr15	83379727	83381902	protein_coding	Mcat	intron	ENSMUSG00000048755	ProperStrand	20	2	-5.8116
chr17	39846932	39846974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	122112410	122112487	LTR	LTR37A	ERV1	chr7LTR37A122112127	NonProperStrand	3	1	-4.3017
chr7	66111255	66111345	LINE	L1Md_F2	L1	chr7L1Md_F266110882	NonProperStrand	2	chr7	66111360	66111460	LINE	L1Md_F2	L1	chr7L1Md_F266110882	ProperStrand	1	1	-inf
chr2	121434047	121434088	protein_coding	Frmd5	intron	ENSMUSG00000027238	NonProperStrand	79	chr5	32004764	32007273	protein_coding	Bre	intron	ENSMUSG00000052139	ProperStrand	76	1	-10.9938
chr15	8674974	8675079	LTR	RLTR10-int	ERVK	chr15RLTR10-int8674887	ProperStrand	1	chr15	83420974	83421007	protein_coding	Ttll12	intron	ENSMUSG00000016757	ProperStrand	38	1	-inf
chr10	40258466	40258534	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr15	99460770	99460847	protein_coding	Racgap1	intron	ENSMUSG00000023015	NonProperStrand	5	1	-10.4713
chr10	40258576	40258623	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr6	71890810	71890852	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-3.9077
chr2	135955749	135955805	protein_coding	Pak7	intron	ENSMUSG00000039913	NonProperStrand	40	chr2	49329200	49329218	protein_coding	Epc2	intron	ENSMUSG00000069495	NonProperStrand	3	1	-19.3678
chr1	156077194	156077210	LTR	RLTR28	ERVL	chr1RLTR28156076924	ProperStrand	1	chr9	40804760	40804817	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr17	39847054	39848685	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr17	39847330	39848466	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	4420	-inf
chr5	146261020	146261079	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr1	21079001	21079043	Low_complexity	GA-rich	Low_complexity	chr1GA-rich21078907	NonProperStrand	1	1	-inf
chr12	105817726	105817816	SINE	B3	B2	chr12B3105817674	NonProperStrand	1	chr12	105817884	105817984	SINE	ID_B1	B4	chr12ID_B1105817879	NonProperStrand	1	1	-inf
chr6	3201475	3201506	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr6	86890121	86890224	protein_coding	Aak1	intron	ENSMUSG00000057230	ProperStrand	54	1	-3.0839
chr3	85986298	85986334	Simple_repeat	(GGAAA)n	Simple_repeat	chr3(GGAAA)n85986247	ProperStrand	3	chr17	34546498	34546586	protein_coding	BC051142	intron	ENSMUSG00000057246	ProperStrand	69	3	-inf
chr2	168601391	168601412	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	24	chr10	119207366	119207476	protein_coding	Grip1	intron	ENSMUSG00000034813	NonProperStrand	73	1	-13.4872
chr4	146903158	146903258	LINE	L1_Mur2	L1	chr4L1_Mur2146902563	ProperStrand	2	chr4	147026536	147026627	protein_coding	2610305D13Rik	intron	ENSMUSG00000066000	NonProperStrand	8	1	-23.4058
chr10	43266056	43266156	SINE	B1_Mur4	Alu	chr10B1_Mur443266034	NonProperStrand	1	chr10	43265962	43266052	SINE	B1_Mus2	Alu	chr10B1_Mus243265884	NonProperStrand	1	1	-inf
chr17	39842998	39843052	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr6	142502938	142503029	LTR	MTD	MaLR	chr6MTD142502919	NonProperStrand	6	1	-10.0973
chr11	79999639	79999699	protein_coding	Rnf135	intron	ENSMUSG00000020707	ProperStrand	16	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-3.4729
chr13	66919563	66919598	LINE	L1_Mur2	L1	chr13L1_Mur266918824	NonProperStrand	2	chr13	66919799	66919855	LINE	L1_Mur2	L1	chr13L1_Mur266919793	NonProperStrand	2	1	-19.8939
chr11	79710614	79710704	LTR	ORR1D2	MaLR	chr11ORR1D279710493	NonProperStrand	2	chr11	79710723	79710823	pseudogene	Gm11203	.	ENSMUSG00000083395	ProperStrand	2	2	-inf
chr17	39845503	39845591	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr17	14200470	14200532	LINE	L1_Mur2	L1	chr17L1_Mur214200416	ProperStrand	3	1	-8.2800
chr17	39848099	39848130	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr12	21360718	21360759	protein_coding	Adam17	intron	ENSMUSG00000052593	ProperStrand	16	1	-3.7913
chr11	12445197	12445227	LTR	RMER17C-int	ERVK	chr11RMER17C-int12444708	ProperStrand	2	chr5	131696595	131696635	protein_coding	Wbscr17	intron	ENSMUSG00000034040	ProperStrand	303	1	-16.2265
chr8	33843894	33843977	LINE	Lx9	L1	chr8Lx933843885	NonProperStrand	5	chr17	45570509	45570566	protein_coding	Cdc5l	utr5	ENSMUSG00000023932	ProperStrand	300	2	-22.4191
chr2	70719360	70719428	lincRNA	Gm13632	intron	ENSMUSG00000085868	NonProperStrand	6	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-17.4028
chr13	14170740	14170840	protein_coding	Arid4b	intron	ENSMUSG00000039219	ProperStrand	27	chr5	92156959	92157021	pseudogene	Gm15710	.	ENSMUSG00000084111	NonProperStrand	50	1	-14.0056
chr11	69994854	69994875	SINE	B3A	B2	chr11B3A69994761	NonProperStrand	1	chr13	97190571	97190602	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr4	133491536	133491626	LTR	MurERV4-int	ERVK	chr4MurERV4-int133491374	NonProperStrand	2	chr4	133491650	133491750	LTR	MurERV4-int	ERVK	chr4MurERV4-int133491645	NonProperStrand	2	2	-inf
chr13	8976182	8976227	protein_coding	Gtpbp4	intron	ENSMUSG00000021149	ProperStrand	25	chr7	127458748	127458822	protein_coding	Abca14	intron	ENSMUSG00000062017	ProperStrand	33	1	-15.0148
chr6	51966586	51966695	LINE	Lx2	L1	chr6Lx251965879	NonProperStrand	2	chr12	54696903	54696947	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	136	1	-17.8206
chr3	101582756	101583753	LTR	MTEb	MaLR	chr3MTEb101582481	ProperStrand	5	chr3	101582070	101582170	SINE	B1_Mur1	Alu	chr3B1_Mur1101582011	ProperStrand	6	3	-inf
chr17	24518763	24519213	protein_coding-noncoding	Abca3	utr5	ENSMUSG00000024130	NonProperStrand	3	chr17	24516582	24518757	protein_coding	Abca3	intron	ENSMUSG00000024130	NonProperStrand	41	2	-inf
chr17	39847545	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr4	130734265	130734338	LTR	MTC-int	MaLR	chr4MTC-int130733825	ProperStrand	2	1	-5.4040
chr7	122398873	122398973	LTR	MLT1B	MaLR	chr7MLT1B122398805	ProperStrand	1	chr7	122398639	122398729	SINE	B1_Mur4	Alu	chr7B1_Mur4122398652	ProperStrand	1	1	-inf
chr2	151001346	151001380	LINE	L1Md_F2	L1	chr2L1Md_F2151000006	NonProperStrand	2	chr17	39848095	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	1	-8.4422
chr5	146281686	146281741	LINE	L1Md_F2	L1	chr5L1Md_F2146277668	NonProperStrand	11	chr5	146274779	146274869	LTR	RMER10B	ERVL	chr5RMER10B146274496	ProperStrand	1	1	-inf
chr9	53229130	53229221	protein_coding	4930550C14Rik	intron	ENSMUSG00000005131	NonProperStrand	5	chr2	90395132	90395171	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	189	1	-14.8930
chr17	39843826	39843867	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	29996108	29996159	protein_coding	Tbc1d13	intron	ENSMUSG00000039678	ProperStrand	32	1	-4.1427
chr10	40258543	40258599	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr14	21544356	21544459	protein_coding	Ndst2	intron	ENSMUSG00000039308	NonProperStrand	56	1	-5.4914
chr13	119707907	119708025	LINE	L1Md_F2	L1	chr13L1Md_F2119706478	NonProperStrand	24	chr7	129378008	129378025	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n129377999	ProperStrand	1	1	-inf
chr6	3201503	3201547	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr15	83572270	83573814	SINE	RSINE1	B4	chr15RSINE183572219	NonProperStrand	2	1	-10.1342
chr1	83569586	83569676	LINE	L1Md_F2	L1	chr1L1Md_F283569586	NonProperStrand	1	chr1	83569480	83569580	LINE	L1_Mm	L1	chr1L1_Mm83569135	ProperStrand	1	1	-inf
chr9	44334928	44334981	DNA	MER81	AcHobo	chr9MER8144334943	ProperStrand	2	chr17	39846921	39847005	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr6	3201478	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	102403777	102405713	protein_coding	Gpatch8	intron	ENSMUSG00000034621	ProperStrand	58	2	-5.1226
chr2	179587674	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr12	76822205	76822222	protein_coding	Sgpp1	intron	ENSMUSG00000021054	NonProperStrand	17	1	-13.1592
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr8	13180655	13180695	protein_coding	Grtp1	intron	ENSMUSG00000038515	ProperStrand	34	1	-15.4099
chr4	137521741	137522050	LTR	BGLII_B	ERVK	chr4BGLII_B137521548	ProperStrand	10	chr4	137520538	137521487	protein_coding	Ece1	utr3	ENSMUSG00000057530	ProperStrand	325	9	-21.1559
chr16	50428920	50432270	protein_coding-noncoding	Bbx	utr3	ENSMUSG00000022641	ProperStrand	1	chr16	50280518	50428914	protein_coding	Bbx	utr5	ENSMUSG00000022641	ProperStrand	76	1	-inf
chr2	156256776	156256866	protein_coding	Epb4.1l1	intron	ENSMUSG00000027624	ProperStrand	54	chr2	158358362	158358462	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	124	1	-10.7767
chr18	42564134	42567884	SINE	B3A	B2	chr18B3A42564143	NonProperStrand	2	chr18	42561042	42564117	Simple_repeat	(TG)n	Simple_repeat	chr18(TG)n42564086	ProperStrand	1	1	-inf
chr13	94398223	94398323	antisense	Gm15622	.	ENSMUSG00000085834	ProperStrand	6	chr13	94399642	94399732	protein_coding	Bhmt	intron	ENSMUSG00000074768	NonProperStrand	12	1	-inf
chr14	27498831	27500262	LINE	L1_Mur1	L1	chr14L1_Mur127496951	NonProperStrand	1	chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	1	-inf
chr9	19657988	19658078	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	113	chr16	42845562	42845663	lincRNA	4932412D23Rik	intron	ENSMUSG00000075070	ProperStrand	10	2	-27.0865
chr10	7660953	7661053	protein_coding	Tab2	intron	ENSMUSG00000015755	ProperStrand	37	chr11	88844183	88844229	protein_coding	Coil	intron	ENSMUSG00000033983	NonProperStrand	94	1	-12.0964
chr19	9985483	9985507	LTR	RMER6A	ERVK	chr19RMER6A9985379	NonProperStrand	1	chr15	83149719	83149795	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	139	1	-inf
chr9	123461919	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chrX	162774570	162777812	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	43	3	-5.0150
chr8	121903985	121904019	DNA	Charlie7	MER1_type	chr8Charlie7121903504	NonProperStrand	7	chr8	121898125	121898224	LTR	MuRRS4-int	ERV1	chr8MuRRS4-int121897445	ProperStrand	3	1	-inf
chr8	105565530	105565562	LINE	L1M4	L1	chr8L1M4105565489	NonProperStrand	1	chr8	105565728	105565813	LINE	Lx8	L1	chr8Lx8105565719	NonProperStrand	2	1	-inf
chr2	13012113	13012185	protein_coding	Rsu1	intron	ENSMUSG00000026727	NonProperStrand	5	chr7	25074746	25074802	protein_coding	Zfp61	intron	ENSMUSG00000050605	ProperStrand	4	1	-inf
chr17	39848099	39848134	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr10	127381638	127381710	SINE	B2_Mm2	B2	chr10B2_Mm2127381611	ProperStrand	1	1	-inf
chr14	47268193	47268725	SINE	B4A	B4	chr14B4A47268481	ProperStrand	1	chr16	50326552	50326617	protein_coding	Bbx	intron	ENSMUSG00000022641	ProperStrand	76	1	-inf
chr7	112760837	112765957	protein_coding-noncoding	Trim3	utr3	ENSMUSG00000036989	NonProperStrand	2	chr7	112760751	112766086	protein_coding	Trim3	intron	ENSMUSG00000036989	NonProperStrand	139	2	-inf
chr11	32233948	32233964	DNA	Charlie12	MER1_type	chr11Charlie1232233558	NonProperStrand	2	chr19	5797810	5797911	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-11.8135
chr15	80078494	80078589	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	429	chr19	29363200	29363256	protein_coding	Jak2	exon	ENSMUSG00000024789	ProperStrand	6	1	-12.8444
chr11	103194740	103194840	protein_coding-noncoding	Arhgap27	utr3	ENSMUSG00000034255	NonProperStrand	3	chr11	103194634	103194724	protein_coding	Arhgap27	intron	ENSMUSG00000034255	NonProperStrand	5	3	-inf
chr12	116417971	116418085	LTR	ORR1A2-int	MaLR	chr12ORR1A2-int116416831	ProperStrand	1	chr9	65201721	65201749	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	97	1	-inf
chr2	59228330	59228420	LINE	L1MA6	L1	chr2L1MA659228354	NonProperStrand	1	chr2	59228440	59228539	LINE	L1MD1	L1	chr2L1MD159228462	NonProperStrand	1	1	-inf
chr4	32888520	32888610	SINE	RSINE1	B4	chr4RSINE132888454	NonProperStrand	6	chr4	32888358	32888458	protein_coding-noncoding	Lyrm2	utr5	ENSMUSG00000045854	NonProperStrand	8	6	-inf
chr19	18802029	18802129	LINE	L1MEf	L1	chr19L1MEf18801960	NonProperStrand	1	chr19	18802459	18802549	LTR	RLTR11A	ERVK	chr19RLTR11A18802162	NonProperStrand	1	1	-inf
chr2	10420596	10420630	miRNA	Mir669a-10	.	ENSMUSG00000076020	ProperStrand	1	chr2	10420481	10420579	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-inf
chr6	33603885	33603950	protein_coding	Exoc4	intron	ENSMUSG00000029763	ProperStrand	817	chr7	109038344	109038419	protein_coding	3200002M19Rik	intron	ENSMUSG00000030649	NonProperStrand	3	2	-inf
chr13	44869896	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr2	36094032	36094048	protein_coding	Ptgs1	intron	ENSMUSG00000047250	ProperStrand	13	1	-7.5322
chr12	110498294	110498361	LINE	L1Md_F2	L1	chr12L1Md_F2110497063	NonProperStrand	25	chr12	110496150	110496227	LINE	Lx6	L1	chr12Lx6110495363	NonProperStrand	1	1	-inf
chr11	78183073	78183124	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	95	chr12	41455478	41455556	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	325	1	-7.7222
chr17	39847041	39847107	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	110631235	110631281	LTR	MTEa	MaLR	chr8MTEa110631002	NonProperStrand	1	1	-inf
chr16	57482463	57482534	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr1	89816620	89816684	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-6.0038
chr4	3936942	3936963	protein_coding	Sdr16c5	intron	ENSMUSG00000028236	NonProperStrand	10	chr11	97212698	97212824	protein_coding	Gpr179	exon	ENSMUSG00000070337	ProperStrand	22	1	-17.8573
chr10	83365949	83366018	LINE	L1MA5	L1	chr10L1MA583365507	NonProperStrand	7	chr10	81139451	81139525	LTR	IAPEz-int	ERVK	chr10IAPEz-int81133652	NonProperStrand	7	1	-inf
chrX	162444753	162444791	LINE	L1_Mur2	L1	chrXL1_Mur2162444478	ProperStrand	1	chr17	39847277	39847347	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr17	39848158	39848197	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr9	32203069	32203098	protein_coding	Kcnj1	intron	ENSMUSG00000041248	ProperStrand	9	1	-4.9272
chr2	60375280	60375367	protein_coding	Pla2r1	intron	ENSMUSG00000054580	ProperStrand	69	chr2	91954248	91954307	protein_coding	Phf21a	intron	ENSMUSG00000058318	NonProperStrand	121	1	-10.3327
chr8	106665493	106666196	protein_coding	Cdh5	intron	ENSMUSG00000031871	ProperStrand	143	chr7	111076178	111076209	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	1	-9.4432
chr17	39847248	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chrX	143647953	143648043	LTR	MTE2a	MaLR	chrXMTE2a143647888	NonProperStrand	1	1	-inf
chr7	141447648	141447915	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n141447615	ProperStrand	7	chr9	123461957	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-8.6448
chr17	39846143	39846197	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr11	95371352	95371409	protein_coding	Nxph3	utr3	ENSMUSG00000046719	NonProperStrand	5	1	-6.7797
chr15	75996494	75997563	LINE	Lx6	L1	chr15Lx675996784	ProperStrand	1	chr15	75996393	75996483	SINE	B4A	B4	chr15B4A75996373	NonProperStrand	1	1	-inf
chrX	103546077	103546167	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	ProperStrand	7	chr5	107575920	107576020	protein_coding	Tgfbr3	intron	ENSMUSG00000029287	NonProperStrand	60	1	-16.4805
chr1	179166697	179166770	protein_coding	Akt3	intron	ENSMUSG00000019699	ProperStrand	298	chr7	109520118	109520201	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-6.6495
chr6	108783096	108783196	protein_coding	Edem1	intron	ENSMUSG00000030104	ProperStrand	32	chr2	5379247	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-5.7728
chr11	98086666	98086766	protein_coding-noncoding	Cdk12	utr5	ENSMUSG00000003119	NonProperStrand	4	chr11	98086762	98086852	protein_coding	Cdk12	intron	ENSMUSG00000003119	NonProperStrand	35	2	-inf
chr1	164483692	164483738	DNA	URR1B	MER1_type	chr1URR1B164483696	ProperStrand	1	chr9	123111013	123111069	protein_coding	Cdcp1	intron	ENSMUSG00000035498	ProperStrand	55	1	-inf
chr14	55500453	55501232	SINE	MIRb	MIR	chr14MIRb55500414	ProperStrand	1	chr1	89848259	89848359	protein_coding	Usp40	intron	ENSMUSG00000005501	NonProperStrand	182	1	-inf
chr18	63078738	63078754	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	31	chr6	88485108	88485240	LTR	RLTR26	ERVK	chr6RLTR2688485032	ProperStrand	2	1	-20.3967
chr6	37441489	37441551	LTR	MYSERV6-int	ERVK	chr6MYSERV6-int37441489	NonProperStrand	1	chr6	37413683	37413755	SINE	PB1D10	Alu	chr6PB1D1037413671	NonProperStrand	1	1	-inf
chr10	79863607	79863623	SINE	PB1D9	Alu	chr10PB1D979863560	ProperStrand	1	chr11	101604936	101605037	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	1	-inf
chr18	49700851	49700951	LINE	L1_Mur3	L1	chr18L1_Mur349700133	NonProperStrand	2	chr18	49700968	49701058	LINE	L1_Mur3	L1	chr18L1_Mur349700980	NonProperStrand	2	2	-inf
chr11	29513216	29513243	lincRNA	Gm12092	intron	ENSMUSG00000084850	ProperStrand	4	chr15	75619197	75619215	protein_coding	Zc3h3	intron	ENSMUSG00000075600	NonProperStrand	29	1	-19.0298
chr9	108336683	108336700	SINE	B1_Mur1	Alu	chr9B1_Mur1108336560	NonProperStrand	7	chr16	94644784	94644808	protein_coding	Ttc3	intron	ENSMUSG00000040785	ProperStrand	131	1	-14.8850
chr11	114675334	114675424	SINE	B1_Mm	Alu	chr11B1_Mm114675355	ProperStrand	1	chr11	114675557	114675657	SINE	ID_B1	B4	chr11ID_B1114675522	ProperStrand	1	1	-inf
chr12	109569844	109569914	SINE	B4	B4	chr12B4109569827	ProperStrand	6	chr12	109551103	109551159	protein_coding	Hhipl1	intron	ENSMUSG00000021260	ProperStrand	179	1	-14.5979
chr16	23111324	23111424	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	172	chr1	181913255	181913345	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	441	5	-20.0983
chr9	123461802	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr9	78478649	78480279	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	575	15	-3.0348
chr6	34305033	34305133	protein_coding	Akr1b8	intron	ENSMUSG00000029762	NonProperStrand	44	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-9.2510
chr2	168679140	168679230	SINE	B1_Mus1	Alu	chr2B1_Mus1168679147	ProperStrand	2	chr2	168679036	168679134	SINE	B1_Mus2	Alu	chr2B1_Mus2168679000	ProperStrand	2	2	-inf
chr1	4830304	4832362	protein_coding-noncoding	Lypla1	utr5	ENSMUSG00000025903	ProperStrand	4	chr1	4807925	4808481	protein_coding	Lypla1	intron	ENSMUSG00000025903	ProperStrand	29	1	-19.0298
chr4	23128224	23128324	LINE	L1Md_A	L1	chr4L1Md_A23124464	NonProperStrand	1	chr4	23128789	23128879	LINE	L1Md_A	L1	chr4L1Md_A23128317	ProperStrand	1	1	-inf
chrX	150578650	150578750	LINE	L1_Mus1	L1	chrXL1_Mus1150578390	ProperStrand	1	chr9	123461802	123461848	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr2	105425435	105425487	antisense	Pax6os1	.	ENSMUSG00000086029	ProperStrand	19	chr16	36704807	36704900	protein_coding	Ildr1	intron	ENSMUSG00000022900	ProperStrand	32	2	-20.0828
chr19	8781194	8781284	SINE	B3	B2	chr19B38781136	ProperStrand	1	chr19	8780331	8780431	SINE	PB1D7	Alu	chr19PB1D78780297	NonProperStrand	1	1	-inf
chr4	59831009	59831053	protein_coding	Snx30	intron	ENSMUSG00000028385	ProperStrand	123	chr8	119905984	119906003	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	145	1	-8.8129
chr11	69667369	69667397	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	269	chr9	59678857	59678909	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	1067	1	-3.4181
chr6	3201508	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr17	35657059	35657090	protein_coding-noncoding	Cchcr1	utr5	ENSMUSG00000040312	NonProperStrand	15	1	-5.5348
chr4	148514467	148514537	LTR	ORR1B1-int	MaLR	chr4ORR1B1-int148514466	ProperStrand	1	chr4	148514035	148514087	LTR	RLTR20B1	ERVK	chr4RLTR20B1148513640	ProperStrand	1	1	-inf
chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr3	95666935	95667018	protein_coding	Mrps21	intron	ENSMUSG00000054312	NonProperStrand	22	1	-6.4623
chr8	94675947	94676047	SINE	PB1D10	Alu	chr8PB1D1094675928	NonProperStrand	4	chr8	94675765	94675855	Simple_repeat	(TTCC)n	Simple_repeat	chr8(TTCC)n94675757	ProperStrand	4	4	-inf
chr14	120356482	120356581	LTR	IAPEz-int	ERVK	chr14IAPEz-int120355817	NonProperStrand	9	chr15	36595073	36595107	SINE	B1F	Alu	chr15B1F36594978	NonProperStrand	1	1	-inf
chr17	39848099	39848163	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr1	24049169	24053237	protein_coding	Fam135a	utr5	ENSMUSG00000026153	ProperStrand	12	1	-4.3503
chr18	35554490	35554600	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr4	53860730	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-5.8504
chr9	123462131	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr6	128503781	128503839	protein_coding	BC048546	intron	ENSMUSG00000047228	NonProperStrand	7	1	-5.1121
chr14	118972792	118975144	protein_coding	Abcc4	intron	ENSMUSG00000032849	NonProperStrand	14	chr17	30678251	30678329	protein_coding	Btbd9	intron	ENSMUSG00000062202	NonProperStrand	156	1	-13.0667
chr2	30071459	30071531	LINE	L1M5	L1	chr2L1M530071423	ProperStrand	8	chr17	66494859	66494877	protein_coding	Ddx11	intron	ENSMUSG00000035842	ProperStrand	5	1	-22.1864
chr16	13836420	13836510	protein_coding-noncoding	Pdxdc1	utr3	ENSMUSG00000022680	NonProperStrand	6	chr16	13836565	13836665	protein_coding	Pdxdc1	exon	ENSMUSG00000022680	NonProperStrand	23	5	-inf
chr11	117702380	117714205	protein_coding	Birc5	utr3	ENSMUSG00000017716	ProperStrand	11	chr11	117700742	117702386	protein_coding	RP23-268N22.1	utr5	ENSMUSG00000093485	ProperStrand	53	5	-20.4277
chr11	6419266	6419550	protein_coding	Myo1g	utr5	ENSMUSG00000020437	NonProperStrand	91	chr11	85204299	85209976	protein_coding	Bcas3	intron	ENSMUSG00000059439	NonProperStrand	49	1	-11.5936
chr13	84666419	84666509	LINE	L1_Mus2	L1	chr13L1_Mus284664834	ProperStrand	1	chr13	84666723	84666823	LINE	L1_Mus2	L1	chr13L1_Mus284666637	ProperStrand	1	1	-inf
chr10	13703922	13703944	lincRNA	Gm8330	intron	ENSMUSG00000091527	ProperStrand	5	chr13	97190548	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.2290
chr8	70838559	70838659	protein_coding	Sh2d4a	intron	ENSMUSG00000053886	NonProperStrand	62	chr17	35965489	35965579	protein_coding	Flot1	intron	ENSMUSG00000059714	NonProperStrand	20	1	-14.1901
chr9	21075781	21075900	protein_coding	Atg4d	intron	ENSMUSG00000002820	NonProperStrand	28	chr6	47190179	47190210	protein_coding	Cntnap2	intron	ENSMUSG00000039419	NonProperStrand	121	1	-12.1557
chr8	114783756	114783825	LTR	MTD	MaLR	chr8MTD114783678	ProperStrand	1	chr11	97978039	97978129	protein_coding	Fbxl20	intron	ENSMUSG00000020883	ProperStrand	47	1	-inf
chr10	18479147	18479237	LTR	RLTR45	ERVK	chr10RLTR4518478955	NonProperStrand	1	chr10	18479469	18479569	SINE	B2_Mm1a	B2	chr10B2_Mm1a18479425	NonProperStrand	1	1	-inf
chr11	117244798	117244818	Low_complexity	GA-rich	Low_complexity	chr11GA-rich117244775	ProperStrand	1	chr11	117244656	117244688	Simple_repeat	(GA)n	Simple_repeat	chr11(GA)n117244594	ProperStrand	1	1	-inf
chr7	34211340	34211383	LINE	L1M3	L1	chr7L1M334211300	NonProperStrand	2	chr9	46221383	46221457	LTR	ORR1E	MaLR	chr9ORR1E46221265	ProperStrand	1	1	-inf
chr6	124914224	124914466	protein_coding	Cops7a	intron	ENSMUSG00000030127	ProperStrand	17	chr7	25381053	25381085	protein_coding	Ethe1	intron	ENSMUSG00000064254	ProperStrand	7	1	-18.7474
chr7	110783780	110783837	LINE	Lx	L1	chr7Lx110783102	ProperStrand	2	chr17	39847895	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	75174160	75174353	protein_coding	Abcb6	intron	ENSMUSG00000026198	ProperStrand	1	1	-inf
chr10	58494961	58494984	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	155	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	47	1	-10.6097
chr3	152751931	152752021	LINE	L1MA4	L1	chr3L1MA4152751751	NonProperStrand	2	chr3	152752075	152752175	SINE	B3A	B2	chr3B3A152752100	NonProperStrand	2	2	-inf
chr7	38034232	38034332	LTR	RMER5	ERV1	chr7RMER538034150	NonProperStrand	1	chr7	37701396	37701486	SINE	B4	B4	chr7B437701415	NonProperStrand	1	1	-inf
chr9	118674950	118674988	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr5	122191028	122191125	protein_coding	Atxn2	intron	ENSMUSG00000042605	NonProperStrand	41	1	-6.7248
chr6	119756816	119756832	protein_coding	Erc1	intron	ENSMUSG00000030172	NonProperStrand	10	chr7	15939814	15940201	protein_coding	Obox2	intron	ENSMUSG00000074369	NonProperStrand	66	1	-15.4880
chr17	39846453	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	65687136	65687220	LTR	MLT1E2	MaLR	chr18MLT1E265687102	NonProperStrand	2	2	-inf
chr5	124286324	124286457	SINE	B3	B2	chr5B3124286294	ProperStrand	2	chr10	34304816	34304833	protein_coding	Frk	intron	ENSMUSG00000019779	ProperStrand	25	2	-inf
chr13	18791637	18794349	SINE	B3A	B2	chr13B3A18794233	ProperStrand	1	chr12	105031200	105031225	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	245	1	-inf
chr4	127232564	127232616	lincRNA	A630031M04Rik	intron	ENSMUSG00000087470	ProperStrand	45	chr1	132508011	132508053	protein_coding	Zp3r	intron	ENSMUSG00000042554	NonProperStrand	56	1	-12.7421
chr11	12399966	12400066	LINE	Lx8	L1	chr11Lx812399735	NonProperStrand	1	chr16	35477069	35477161	protein_coding	Pdia5	intron	ENSMUSG00000022844	ProperStrand	150	1	-inf
chrX	14201912	14202012	LTR	LTR16C	ERVL	chrXLTR16C14201935	NonProperStrand	1	chrX	14202181	14202271	LTR	RMER19C	ERVK	chrXRMER19C14202058	NonProperStrand	1	1	-inf
chr7	27613894	27613996	Simple_repeat	(CCTG)n	Simple_repeat	chr7(CCTG)n27613887	ProperStrand	1	chr17	45567936	45567983	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-inf
chr6	3201485	3201551	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr4	43035900	43035976	protein_coding	Pigo	intron	ENSMUSG00000028454	ProperStrand	7	2	-11.6650
chr17	46973975	46974006	SINE	B1_Mus1	Alu	chr17B1_Mus146973962	NonProperStrand	1	chr5	141396425	141396520	protein_coding	Card11	intron	ENSMUSG00000036526	NonProperStrand	24	1	-inf
chr15	11990992	11991024	LTR	IAPEz-int	ERVK	chr15IAPEz-int11986107	ProperStrand	22	chr2	5379261	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-6.5200
chr7	68090394	68090507	LINE	Lx9	L1	chr7Lx968090383	ProperStrand	9	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-10.4355
chr8	93833273	93836926	protein_coding	Rpgrip1l	intron	ENSMUSG00000033282	NonProperStrand	14	chr8	93839104	93843387	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	135	2	-19.1910
chr13	36235449	36235539	protein_coding	Fars2	intron	ENSMUSG00000021420	NonProperStrand	24	chr13	36225385	36225485	protein_coding	Fars2	intron	ENSMUSG00000021420	ProperStrand	279	1	-10.7960
chr1	94713688	94713788	LTR	RMER12	ERVK	chr1RMER1294713629	NonProperStrand	1	chr1	94713888	94713978	SINE	B4	B4	chr1B494713900	ProperStrand	1	1	-inf
chr17	39847174	39847225	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr1	74492910	74492996	protein_coding	Usp37	intron	ENSMUSG00000033364	ProperStrand	27	3	-4.0420
chr14	19768296	19768372	LINE	L1_Mus2	L1	chr14L1_Mus219767656	ProperStrand	23	chr6	28780053	28780104	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	1	-8.4557
chr17	12164065	12164119	protein_coding	Park2	intron	ENSMUSG00000023826	ProperStrand	187	chr1	24049938	24050018	protein_coding	Fam135a	intron	ENSMUSG00000026153	ProperStrand	12	1	-13.0254
chr5	92974417	92974487	LTR	RLTR6-int	ERV1	chr5RLTR6-int92972548	ProperStrand	1	chr17	29078531	29078593	protein_coding	Pxt1	intron	ENSMUSG00000045378	ProperStrand	12	1	-inf
chr10	128896359	128896449	LINE	Lx	L1	chr10Lx128895191	NonProperStrand	1	chr10	128896721	128896821	LTR	RLTR13D2	ERVK	chr10RLTR13D2128896464	ProperStrand	1	1	-inf
chr8	41351110	41351210	LTR	ERVL-B4-int	ERVL	chr8ERVL-B4-int41351062	NonProperStrand	2	chr8	41351252	41351342	LTR	ORR1E	MaLR	chr8ORR1E41351245	NonProperStrand	1	1	-inf
chr11	107353745	107353829	protein_coding	Psmd12	intron	ENSMUSG00000020720	NonProperStrand	27	chr1	136744050	136744123	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	141	1	-11.9223
chr5	115489553	115489602	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr8	78057372	78057461	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	69	1	-8.8747
chr15	88703262	88703335	LTR	RMER6B	ERVK	chr15RMER6B88703200	NonProperStrand	1	chr9	123461983	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	87111835	87111909	LTR	MER21B	ERV1	chr3MER21B87111841	NonProperStrand	1	chr3	87111154	87111197	LTR	RLTR15	ERVK	chr3RLTR1587111101	NonProperStrand	1	1	-inf
chr3	36568738	36569074	protein_coding-noncoding	Trpc3	utr3	ENSMUSG00000027716	ProperStrand	5	chr3	36570794	36571702	protein_coding	Trpc3	intron	ENSMUSG00000027716	ProperStrand	12	2	-inf
chr6	40396504	40396527	protein_coding	Wee2	intron	ENSMUSG00000037159	ProperStrand	6	chr7	119890203	119890322	protein_coding	Tead1	intron	ENSMUSG00000055320	NonProperStrand	51	1	-17.1848
chr15	32218078	32218169	protein_coding	Sema5a	intron	ENSMUSG00000022231	NonProperStrand	6	chr15	32504462	32504562	protein_coding	Sema5a	intron	ENSMUSG00000022231	ProperStrand	17	1	-19.6461
chr3	152239448	152239486	protein_coding	Ak5	intron	ENSMUSG00000039058	NonProperStrand	72	chr18	42244861	42245998	protein_coding	Sh3rf2	intron	ENSMUSG00000057719	NonProperStrand	45	1	-12.2364
chr10	14322089	14322179	LTR	ORR1C2	MaLR	chr10ORR1C214322072	NonProperStrand	1	chr10	14321821	14321921	LTR	RMER15	ERVL	chr10RMER1514321712	NonProperStrand	1	1	-inf
chr8	89006097	89006197	LTR	RMER15	ERVL	chr8RMER1589006073	ProperStrand	1	chr8	89006224	89006314	protein_coding-noncoding	Abcc12	utr3	ENSMUSG00000036872	ProperStrand	8	1	-inf
chr11	62604512	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	40	chrX	61938930	61938998	LTR	ORR1A1	MaLR	chrXORR1A161938647	ProperStrand	2	1	-19.9361
chr6	40808116	40808216	LINE	Lx9	L1	chr6Lx940808124	ProperStrand	1	chr6	40808333	40808423	LTR	BGLII	ERVK	chr6BGLII40808275	ProperStrand	1	1	-inf
chr9	45432340	45432379	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	173	chr13	97190559	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.1341
chr7	109521727	109521750	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	chr4	129361526	129361572	protein_coding	Tmem39b	intron	ENSMUSG00000053730	ProperStrand	10	1	-13.5072
chr3	87078873	87078889	SINE	B1_Mus2	Alu	chr3B1_Mus287078774	NonProperStrand	1	chr9	40804786	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-inf
chr13	29020882	29020982	SINE	B1_Mur3	Alu	chr13B1_Mur329020841	NonProperStrand	1	chr15	80200347	80200437	protein_coding	Cacna1i	intron	ENSMUSG00000022416	ProperStrand	114	1	-inf
chr11	5899523	5899543	protein_coding	Camk2b	intron	ENSMUSG00000057897	ProperStrand	19	chr15	82839269	82839371	protein_coding	Nfam1	intron	ENSMUSG00000058099	ProperStrand	119	1	-12.9816
chr10	128048053	128048078	LINE	Lx7	L1	chr10Lx7128047532	ProperStrand	18	chrX	101184895	101184955	LINE	L1_Mur3	L1	chrXL1_Mur3101184524	ProperStrand	2	1	-20.2142
chr2	69028036	69028118	LINE	L1Md_F3	L1	chr2L1Md_F369027774	NonProperStrand	1	chr3	108815369	108815441	protein_coding	Fam102b	intron	ENSMUSG00000040339	ProperStrand	11	1	-inf
chr2	154922689	154922779	LTR	MTD	MaLR	chr2MTD154922604	ProperStrand	1	chr2	154922434	154922534	SINE	B3	B2	chr2B3154922391	ProperStrand	1	1	-inf
chr14	31171915	31171931	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr12	99872876	99873008	protein_coding	Spata7	intron	ENSMUSG00000021007	NonProperStrand	6	1	-13.8798
chr12	86883918	86884042	LTR	MTD	MaLR	chr12MTD86883787	ProperStrand	1	chr17	39847357	39847389	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	11572680	11572784	SINE	RSINE1	B4	chr4RSINE111572674	NonProperStrand	1	chr4	11572631	11572684	Simple_repeat	(TATG)n	Simple_repeat	chr4(TATG)n11572624	ProperStrand	1	1	-inf
chr17	87721030	87723345	protein_coding	Ttc7	intron	ENSMUSG00000036918	ProperStrand	70	chr11	74781459	74781492	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	156	1	-9.7953
chr4	132270078	132270099	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	109	chr15	89145351	89145442	protein_coding	Sbf1	intron	ENSMUSG00000036529	ProperStrand	15	2	-20.7923
chr5	121417153	121417176	protein_coding	Rph3a	intron	ENSMUSG00000029608	NonProperStrand	86	chr8	127216789	127216872	protein_coding	Ttc13	intron	ENSMUSG00000037300	NonProperStrand	38	1	-12.2209
chr16	24824862	24824969	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	chr11	33156708	33156738	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	1	-4.6110
chr4	106356083	106356128	protein_coding	Heatr8	intron	ENSMUSG00000047502	NonProperStrand	36	chr11	67064641	67064696	protein_coding	Myh4	intron	ENSMUSG00000057003	ProperStrand	7	1	-17.5152
chr17	29627058	29627172	lincRNA	Gm16912	intron	ENSMUSG00000087551	NonProperStrand	29	chr10	122980813	122980831	protein_coding	Fam19a2	intron	ENSMUSG00000044071	NonProperStrand	176	1	-11.3326
chr10	21350287	21350350	LINE	L1MC3	L1	chr10L1MC321350057	NonProperStrand	2	chr17	39847803	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39847657	39847697	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr19	29052443	29052562	SINE	B4	B4	chr19B429052407	ProperStrand	1	1	-inf
chr1	103188957	103189057	LINE	L1_Mur1	L1	chr1L1_Mur1103188682	NonProperStrand	1	chr6	11984653	11984743	protein_coding	Phf14	intron	ENSMUSG00000029629	ProperStrand	37	1	-inf
chr4	132352463	132352537	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr14	62668736	62668778	SINE	B4	B4	chr14B462668501	ProperStrand	1	1	-inf
chr4	121162339	121162429	LINE	L1_Mm	L1	chr4L1_Mm121162339	ProperStrand	1	chr4	121162216	121162316	LTR	RMER17D	ERVK	chr4RMER17D121161953	ProperStrand	1	1	-inf
chr3	81058980	81059010	LINE	L1Md_A	L1	chr3L1Md_A81056968	NonProperStrand	5	chr11	3847791	3848059	protein_coding	4930556J24Rik	intron	ENSMUSG00000034493	ProperStrand	4	1	-inf
chr13	85174190	85174207	LINE	Lx7	L1	chr13Lx785173601	ProperStrand	1	chr14	33967400	33967497	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	1	-inf
chr7	79329943	79330032	protein_coding	Mctp2	intron	ENSMUSG00000032776	NonProperStrand	86	chr9	119256220	119256262	protein_coding	Acaa1a	intron	ENSMUSG00000036138	NonProperStrand	5	1	-16.4732
chr2	179643945	179644014	LTR	RMER4B	ERVK	chr2RMER4B179643866	NonProperStrand	1	chr2	179643714	179643783	SINE	B1_Mus1	Alu	chr2B1_Mus1179643693	ProperStrand	1	1	-inf
chr6	119866403	119866503	protein_coding	Rad52	intron	ENSMUSG00000030166	ProperStrand	2	chr4	106999714	106999804	protein_coding	Yipf1	intron	ENSMUSG00000057375	ProperStrand	174	1	-17.3408
chrX	20814247	20814279	LINE	L1Md_T	L1	chrXL1Md_T20813915	NonProperStrand	1	chr17	39846622	39846697	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr1	143694681	143694727	LINE	L1Md_A	L1	chr1L1Md_A143694553	NonProperStrand	1	chr17	39846427	39846483	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	112678746	112678792	LINE	L1VL4	L1	chr3L1VL4112676292	ProperStrand	1	chr5	131883668	131883769	SINE	B3A	B2	chr5B3A131883583	NonProperStrand	1	1	-inf
chr1	36316661	36316761	SINE	B2_Mm1a	B2	chr1B2_Mm1a36316681	NonProperStrand	2	chr1	36316547	36316637	SINE	RSINE1	B4	chr1RSINE136316503	NonProperStrand	2	2	-inf
chr6	113109806	113109916	LINE	L1MC5	L1	chr6L1MC5113109749	ProperStrand	1	chr17	39847696	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39847844	39847955	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	35650989	35651008	SINE	PB1D10	Alu	chr13PB1D1035650975	ProperStrand	2	1	-5.4040
chr7	10252237	10252256	LINE	L1Md_F3	L1	chr7L1Md_F310247518	ProperStrand	1	chr17	39846660	39846728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	67116359	67116473	protein_coding	Rsrc1	intron	ENSMUSG00000034544	ProperStrand	37	chr2	76641939	76641984	protein_coding	Ttn	intron	ENSMUSG00000051747	ProperStrand	21	1	-15.1371
chr17	39847236	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	101615627	101615648	protein_coding	Gm12794	exon	ENSMUSG00000070890	ProperStrand	1	1	-inf
chr17	39847276	39847315	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	34484692	34484721	Other	RMER1B	Other	chr18RMER1B34484266	NonProperStrand	1	1	-inf
chr13	29610251	29610311	protein_coding	Cdkal1	intron	ENSMUSG00000006191	ProperStrand	460	chr12	110692732	110692782	protein_coding	Dlk1	utr5	ENSMUSG00000040856	NonProperStrand	246	1	-5.1702
chr3	86849713	86849788	LINE	L1_Mur2	L1	chr3L1_Mur286849499	NonProperStrand	1	chr3	86852179	86852230	LTR	MT2A	ERVL	chr3MT2A86851928	NonProperStrand	1	1	-inf
chr1	7175916	7176023	LINE	L1_Mus1	L1	chr1L1_Mus17173890	ProperStrand	1	chr17	81001464	81001481	protein_coding	Map4k3	intron	ENSMUSG00000024242	ProperStrand	22	1	-inf
chr2	144373271	144373375	protein_coding	Rbbp9	intron	ENSMUSG00000027428	NonProperStrand	10	chr1	89828565	89828629	protein_coding	Dgkd	intron	ENSMUSG00000070738	ProperStrand	213	1	-13.1474
chr2	86009176	86009276	LINE	Lx9	L1	chr2Lx986009172	ProperStrand	2	chr2	86009049	86009139	LTR	RMER6A	ERVK	chr2RMER6A86008672	ProperStrand	2	2	-inf
chr6	94565589	94565686	protein_coding	Lrig1	intron	ENSMUSG00000030029	NonProperStrand	43	chr9	60253558	60253602	protein_coding	Thsd4	intron	ENSMUSG00000032289	ProperStrand	50	1	-13.0636
chr9	21026982	21027049	SINE	B3A	B2	chr9B3A21026970	NonProperStrand	1	chr11	12305087	12305154	protein_coding	Cobl	intron	ENSMUSG00000020173	ProperStrand	265	1	-inf
chr17	39843708	39843764	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr11	68997961	68998007	protein_coding	Alox8	utr3	ENSMUSG00000020891	ProperStrand	38	1	-3.8175
chr13	6819271	6819361	LINE	L1Md_T	L1	chr13L1Md_T6819253	ProperStrand	1	chr13	6819078	6819178	LINE	Lx	L1	chr13Lx6818598	ProperStrand	1	1	-inf
chr19	9893607	9893640	LINE	L1Md_F2	L1	chr19L1Md_F29892644	NonProperStrand	16	chr19	9894927	9895411	LINE	L1Md_F2	L1	chr19L1Md_F29894638	NonProperStrand	4	2	-inf
chr17	39846747	39846794	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	98225787	98225850	protein_coding	Stard3	intron	ENSMUSG00000018167	ProperStrand	5	1	-3.1907
chr16	18523910	18524010	protein_coding	Gnb1l	intron	ENSMUSG00000000884	NonProperStrand	32	chr6	120205023	120205113	protein_coding	B4galnt3	intron	ENSMUSG00000041372	ProperStrand	61	1	-13.2598
chr16	90026828	90026854	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr2	157104932	157106242	protein_coding	Rpn2	intron	ENSMUSG00000027642	ProperStrand	2	1	-13.7511
chr9	67594507	67594559	LTR	MYSERV16_I-int	ERVK	chr9MYSERV16_I-int67592808	ProperStrand	2	chr9	67601744	67601806	LTR	RLTR41	ERV1	chr9RLTR4167601519	ProperStrand	1	1	-inf
chr9	107757295	107757365	protein_coding	Rbm6	intron	ENSMUSG00000032582	ProperStrand	49	chr13	97190561	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.5173
chr11	97781412	97781444	SINE	MIRc	MIR	chr11MIRc97781399	NonProperStrand	3	chr11	97781807	97782380	SINE	MIRc	MIR	chr11MIRc97781828	ProperStrand	5	1	-inf
chr10	44283179	44283256	LINE	L1_Mur3	L1	chr10L1_Mur344282643	NonProperStrand	1	chr2	32280747	32280795	protein_coding	Slc25a25	intron	ENSMUSG00000026819	ProperStrand	35	1	-inf
chr16	19050548	19050643	LINE	L1Md_F2	L1	chr16L1Md_F219050430	ProperStrand	3	chr11	75671982	75672016	protein_coding	Rph3al	intron	ENSMUSG00000020847	NonProperStrand	157	1	-16.4616
chr7	144533996	144534016	LTR	ORR1D1	MaLR	chr7ORR1D1144533955	NonProperStrand	3	chr8	122973726	122973839	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	3	-inf
chr17	55999762	55999779	LINE	Lx2	L1	chr17Lx255998042	NonProperStrand	1	chr15	53589997	53590127	protein_coding	Samd12	intron	ENSMUSG00000058656	ProperStrand	377	1	-inf
chr16	36753776	36753792	protein_coding	Slc15a2	exon	ENSMUSG00000022899	NonProperStrand	15	chr2	5379231	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-7.2965
chr13	94664730	94664830	protein_coding	Arsb	intron	ENSMUSG00000042082	NonProperStrand	10	chr13	94829586	94829676	protein_coding	Lhfpl2	intron	ENSMUSG00000045312	NonProperStrand	30	1	-17.0564
chr2	22744864	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr3	121437759	121437827	protein_coding	F3	utr3	ENSMUSG00000028128	ProperStrand	45	1	-7.3815
chr11	70646162	70646801	LINE	L2	L2	chr11L270646154	ProperStrand	4	chr11	70646811	70646901	LTR	ORR1C1	MaLR	chr11ORR1C170646733	ProperStrand	4	4	-inf
chr8	104239952	104240042	LINE	L1Md_F2	L1	chr8L1Md_F2104234661	ProperStrand	1	chr8	104240112	104240212	LINE	L1Md_F2	L1	chr8L1Md_F2104240026	ProperStrand	1	1	-inf
chr8	88745371	88746871	LINE	L1Md_T	L1	chr8L1Md_T88745106	ProperStrand	1	chr17	39847762	39847805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	89154385	89154476	LTR	MTD	MaLR	chr4MTD89154344	ProperStrand	3	chr7	141984950	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	157	1	-16.4616
chr6	39412759	39412839	protein_coding	Dennd2a	utr3	ENSMUSG00000038456	ProperStrand	103	chr16	16998476	16998519	protein_coding	Mapk1	intron	ENSMUSG00000063358	ProperStrand	89	1	-10.1443
chr10	61100536	61100588	DNA	URR1B	MER1_type	chr10URR1B61100502	NonProperStrand	1	chr10	61099609	61099713	Simple_repeat	(GAAA)n	Simple_repeat	chr10(GAAA)n61099541	NonProperStrand	1	1	-inf
chr19	21659461	21659535	LINE	L1MB5	L1	chr19L1MB521659291	ProperStrand	2	chr17	39847447	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr17	39847048	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr12	104731846	104731897	SINE	B1_Mus1	Alu	chr12B1_Mus1104731793	ProperStrand	1	1	-inf
chr12	31303065	31303087	DNA	MER97c	MER1_type?	chr12MER97c31302926	ProperStrand	2	chr1	100180183	100180215	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	1	-17.9846
chr5	149213422	149213512	SINE	B1_Mur2	Alu	chr5B1_Mur2149213336	NonProperStrand	1	chr5	149213509	149214109	SINE	B3	B2	chr5B3149214047	NonProperStrand	7	1	-inf
chrX	51011457	51011547	antisense	AW822252	.	ENSMUSG00000085998	ProperStrand	2	chr9	118674950	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr9	38853735	38853806	LTR	BGLII_B	ERVK	chr9BGLII_B38853362	NonProperStrand	1	chr6	39420138	39420199	protein_coding	Dennd2a	intron	ENSMUSG00000038456	ProperStrand	103	1	-inf
chr11	23593484	23595395	protein_coding	Pus10	intron	ENSMUSG00000020280	NonProperStrand	11	chr3	103772597	103772651	protein_coding	Phtf1	utr5	ENSMUSG00000058388	NonProperStrand	5	1	-21.1483
chr7	36746224	36746271	LTR	ORR1A4	MaLR	chr7ORR1A436746192	NonProperStrand	1	chr7	36708903	36708958	SINE	B4A	B4	chr7B4A36708782	NonProperStrand	1	1	-inf
chr2	158613882	158613982	SINE	B4A	B4	chr2B4A158613909	ProperStrand	1	chr2	158611268	158611358	protein_coding	Fam83d	exon	ENSMUSG00000027654	ProperStrand	1	1	-inf
chr11	109011803	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chrX	4136312	4136357	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	41	1	-6.8545
chr17	39843936	39844008	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr19	18688363	18688396	protein_coding	Ostf1	intron	ENSMUSG00000024725	NonProperStrand	53	1	-4.2218
chr17	39846378	39846486	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	70392524	70392563	protein_coding	Gad1	intron	ENSMUSG00000070880	ProperStrand	4	1	-3.6552
chr2	93729177	93729267	SINE	B4	B4	chr2B493729180	NonProperStrand	4	chr2	93729065	93729165	SINE	B4A	B4	chr2B4A93729070	NonProperStrand	4	4	-inf
chr19	7021714	7021806	protein_coding	Bad	intron	ENSMUSG00000024959	NonProperStrand	24	chr8	93496530	93496597	protein_coding	Chd9	intron	ENSMUSG00000056608	ProperStrand	7	1	-18.3728
chr9	66503650	66503750	LINE	L1MC4	L1	chr9L1MC466503569	ProperStrand	1	chr9	66503939	66504029	LINE	L1MC4	L1	chr9L1MC466503940	ProperStrand	1	1	-inf
chr6	3201469	3201549	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	10	1	-6.3611
chr2	128794489	128801164	protein_coding	Zc3h6	intron	ENSMUSG00000042851	ProperStrand	27	chr2	128793060	128794486	protein_coding	Gm10762	exon	ENSMUSG00000074807	NonProperStrand	4	4	-inf
chr2	131054029	131054045	SINE	B3	B2	chr2B3131053933	ProperStrand	1	chr12	72120892	72121008	protein_coding	Arid4a	intron	ENSMUSG00000048118	ProperStrand	8	1	-inf
chr7	46939837	46939895	LINE	L1Md_A	L1	chr7L1Md_A46939202	ProperStrand	3	chr6	42321303	42321621	protein_coding	Epha1	intron	ENSMUSG00000029859	ProperStrand	1	1	-inf
chr4	43910862	43910917	protein_coding	Reck	exon	ENSMUSG00000028476	ProperStrand	19	chr7	112777159	112777244	protein_coding	Trim3	intron	ENSMUSG00000036989	NonProperStrand	139	1	-12.6693
chr10	7184374	7184464	LTR	ORR1C1-int	MaLR	chr10ORR1C1-int7184185	ProperStrand	2	chr10	7184086	7184186	LTR	ORR1C1	MaLR	chr10ORR1C17183801	ProperStrand	1	1	-inf
chr14	32327062	32332193	LTR	BGLII	ERVK	chr14BGLII32327053	ProperStrand	2	chr14	32325982	32327052	LTR	RMER3D-int	ERVK	chr14RMER3D-int32325972	ProperStrand	2	2	-inf
chr15	96383494	96383572	LTR	MT2_Mm	ERVL	chr15MT2_Mm96383455	NonProperStrand	1	chr15	96383350	96383411	SINE	RSINE1	B4	chr15RSINE196383262	NonProperStrand	1	1	-inf
chr2	18396315	18396415	LTR	LTRIS_Mus	ERV1	chr2LTRIS_Mus18395957	ProperStrand	1	chr2	18396564	18396654	LTR	RMER2	ERV1	chr2RMER218396586	NonProperStrand	1	1	-inf
chr14	82053458	82053549	LINE	L1Md_F2	L1	chr14L1Md_F282051166	NonProperStrand	1	chr14	82053645	82053745	LINE	Lx5	L1	chr14Lx582053627	NonProperStrand	1	1	-inf
chr1	173598122	173598212	LINE	L1_Mus4	L1	chr1L1_Mus4173597865	ProperStrand	1	chr1	173597712	173597812	LTR	RMER19A	ERVK	chr1RMER19A173597520	ProperStrand	1	1	-inf
chrX	42091842	42091942	LINE	L1Md_A	L1	chrXL1Md_A42090968	NonProperStrand	1	chrX	42091994	42092084	LINE	L1_Mur3	L1	chrXL1_Mur342091970	ProperStrand	1	1	-inf
chr17	39847173	39847205	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	130248718	130248734	protein_coding-noncoding	Fam113a	utr3	ENSMUSG00000037773	ProperStrand	1	1	-inf
chr16	89811529	89811546	protein_coding	Tiam1	intron	ENSMUSG00000002489	NonProperStrand	11	chr11	109374986	109375047	protein_coding	Arsg	intron	ENSMUSG00000020604	ProperStrand	62	1	-15.4267
chr19	30064348	30064405	LINE	L1MC3	L1	chr19L1MC330064192	ProperStrand	2	chr17	39847609	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chrX	7859959	7860059	SINE	B2_Mm1a	B2	chrXB2_Mm1a7859964	ProperStrand	3	chrX	7859794	7859884	SINE	B2_Mm2	B2	chrXB2_Mm27859810	ProperStrand	4	3	-inf
chr9	96318640	96318671	DNA	MER58A	MER1_type	chr9MER58A96318506	ProperStrand	1	chr2	31760593	31760705	protein_coding	Lamc3	intron	ENSMUSG00000026840	ProperStrand	74	1	-inf
chr1	113933301	113933337	LINE	L1_Mur1	L1	chr1L1_Mur1113932353	NonProperStrand	2	chr1	113922570	113922660	LINE	Lx3C	L1	chr1Lx3C113921497	ProperStrand	1	1	-inf
chr17	39846594	39846712	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	165775202	165780735	protein_coding	Kifap3	intron	ENSMUSG00000026585	NonProperStrand	3	2	-8.0300
chr7	143232975	143232995	SINE	B4	B4	chr7B4143232870	ProperStrand	1	chr16	13141535	13141628	protein_coding	Ercc4	intron	ENSMUSG00000022545	ProperStrand	19	1	-inf
chr1	171503073	171503160	LINE	L1_Mus4	L1	chr1L1_Mus4171501907	NonProperStrand	35	chr6	65835106	65835175	protein_coding	Prdm5	intron	ENSMUSG00000029913	ProperStrand	205	1	-10.6459
chr1	143672226	143672292	LINE	L1Md_F2	L1	chr1L1Md_F2143672184	ProperStrand	1	chr17	39847041	39847126	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr12	98795810	98795836	LINE	L1Md_T	L1	chr12L1Md_T98795342	ProperStrand	5	chr14	32163920	32163956	protein_coding	Capn7	intron	ENSMUSG00000021893	ProperStrand	13	1	-inf
chr7	5074233	5074328	LINE	Lx6	L1	chr7Lx65072678	NonProperStrand	8	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-11.9789
chr3	133509607	133509697	LINE	Lx	L1	chr3Lx133508089	ProperStrand	3	chr12	109610909	109611009	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-14.1501
chr17	39843708	39843773	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr4	117202569	117202644	LTR	MLT1M	MaLR	chr4MLT1M117202589	ProperStrand	26	1	-4.5417
chr8	69391898	69391995	protein_coding	Naf1	intron	ENSMUSG00000014907	NonProperStrand	10	chr12	4613317	4613363	protein_coding	Itsn2	intron	ENSMUSG00000020640	ProperStrand	58	1	-15.7621
chr9	65057595	65057695	SINE	B1_Mus1	Alu	chr9B1_Mus165057576	ProperStrand	1	chr9	65057816	65057906	SINE	B3A	B2	chr9B3A65057735	ProperStrand	1	1	-inf
chr13	86670088	86670188	LINE	Lx7	L1	chr13Lx786669992	ProperStrand	1	chr13	86669919	86670009	LTR	MTB_Mm	MaLR	chr13MTB_Mm86669602	NonProperStrand	1	1	-inf
chr6	55050373	55067619	protein_coding-noncoding	Crhr2	utr3	ENSMUSG00000003476	NonProperStrand	14	chr6	55050457	55067445	protein_coding	Crhr2	intron	ENSMUSG00000003476	NonProperStrand	33	5	-inf
chr14	63614786	63614859	LINE	L1MA5	L1	chr14L1MA563614431	ProperStrand	3	chr14	63612990	63613036	Low_complexity	GA-rich	Low_complexity	chr14GA-rich63612982	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	chr19	7270977	7271003	protein_coding	Macrod1	exon	ENSMUSG00000036278	ProperStrand	112	1	-5.3460
chr14	45241071	45241171	LTR	ORR1A4	MaLR	chr14ORR1A445241042	NonProperStrand	1	chr14	45241440	45241530	LTR	RMER13A	ERVK	chr14RMER13A45241274	NonProperStrand	1	1	-inf
chrX	111024415	111024515	LTR	IAPEz-int	ERVK	chrXIAPEz-int111024352	ProperStrand	1	chrX	111024229	111024319	LTR	IAPLTR1_Mm	ERVK	chrXIAPLTR1_Mm111023999	ProperStrand	1	1	-inf
chr9	123461882	123462127	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr14	24490724	24496083	protein_coding	Kcnma1	intron	ENSMUSG00000063142	NonProperStrand	128	5	-3.6787
chr10	80120802	80120913	LTR	MLT1L	MaLR	chr10MLT1L80120787	ProperStrand	3	chr10	80121720	80121758	Satellite	ZP3AR	Satellite	chr10ZP3AR80121696	NonProperStrand	1	1	-inf
chr17	39845547	39845677	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	32	1	-3.3487
chr14	21635328	21635382	LINE	Lx6	L1	chr14Lx621634976	ProperStrand	2	chr14	21635799	21635863	LINE	Lx6	L1	chr14Lx621635532	ProperStrand	3	1	-20.8297
chr16	15510106	15510175	LINE	L1Md_F2	L1	chr16L1Md_F215509977	NonProperStrand	1	chr7	119904770	119904854	protein_coding	Tead1	intron	ENSMUSG00000055320	ProperStrand	25	1	-inf
chr17	39847736	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr3	116903292	116903345	LTR	RLTRETN_Mm	ERVK	chr3RLTRETN_Mm116903169	ProperStrand	1	1	-inf
chr17	39847452	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	143072518	143072608	LTR	RMER17B	ERVK	chr7RMER17B143071940	NonProperStrand	2	1	-5.4040
chr3	21954116	21954206	SINE	ID_B1	B4	chr3ID_B121954121	ProperStrand	1	chr3	21953771	21953871	Simple_repeat	(TG)n	Simple_repeat	chr3(TG)n21953775	NonProperStrand	1	1	-inf
chr12	102634165	102634219	LINE	L1Md_A	L1	chr12L1Md_A102633834	NonProperStrand	10	chr5	140074022	140074107	protein_coding	Uncx	intron	ENSMUSG00000029546	NonProperStrand	332	3	-19.6577
chr11	109011740	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	130278014	130278062	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	132	1	-4.5682
chr4	47474015	47474126	LINE	Lx6	L1	chr4Lx647473017	NonProperStrand	5	chr17	39844011	39844042	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	1	-9.0377
chr8	72537044	72537180	SINE	B3A	B2	chr8B3A72536996	NonProperStrand	2	chr8	72537181	72537288	SINE	PB1D9	Alu	chr8PB1D972537166	NonProperStrand	2	2	-inf
chr17	39846419	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	39897506	39897565	LTR	ETnERV2-int	ERVK	chr19ETnERV2-int39896754	NonProperStrand	2	2	-inf
chrX	103968458	103968537	LINE	Lx6	L1	chrXLx6103968456	NonProperStrand	1	chr2	5379277	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr17	39846610	39846732	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	50385974	50386000	SINE	PB1D10	Alu	chr11PB1D1050385953	ProperStrand	1	1	-inf
chr17	39847676	39847729	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	127467248	127467344	SINE	PB1D7	Alu	chr10PB1D7127467234	ProperStrand	1	1	-inf
chr17	39847701	39847728	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr10	128910394	128910461	protein_coding	Olfr788	exon	ENSMUSG00000049217	ProperStrand	5	1	-3.2379
chr4	18375730	18375820	processed_transcript	Gm11867	.	ENSMUSG00000087402	NonProperStrand	11	chr1	108769717	108769817	protein_coding	Serpinb5	intron	ENSMUSG00000067006	NonProperStrand	2	1	-20.5081
chr2	3491721	3494559	LINE	L1MA4	L1	chr2L1MA43494445	ProperStrand	4	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-11.6123
chr6	31202017	31202063	lincRNA	2210408F21Rik	intron	ENSMUSG00000087380	NonProperStrand	67	chr18	69612273	69612329	protein_coding	Tcf4	intron	ENSMUSG00000053477	ProperStrand	144	1	-10.0433
chr17	28892888	28892978	SINE	B1_Mus1	Alu	chr17B1_Mus128892833	ProperStrand	1	chr17	28893245	28893345	SINE	RSINE1	B4	chr17RSINE128893254	ProperStrand	1	1	-inf
chr19	5798113	5798139	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	70554624	70554718	protein_coding	Adam10	intron	ENSMUSG00000054693	ProperStrand	89	1	-3.6968
chr11	84909443	84909459	protein_coding	Usp32	intron	ENSMUSG00000000804	NonProperStrand	50	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-8.2135
chr8	71933863	71933893	LINE	L1_Mus1	L1	chr8L1_Mus171932839	ProperStrand	2	chr17	70963685	70963759	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	1	-13.6441
chr8	18712201	18712262	protein_coding-noncoding	Mcph1	utr3	ENSMUSG00000039842	ProperStrand	17	chr13	44869622	44869673	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-6.9833
chr2	121173571	121173671	protein_coding-noncoding	Ppip5k1	utr3	ENSMUSG00000033526	NonProperStrand	14	chr2	121171400	121173576	protein_coding	Ppip5k1	intron	ENSMUSG00000033526	NonProperStrand	22	6	-21.2842
chr18	80445985	80446047	DNA	URR1B	MER1_type	chr18URR1B80445912	ProperStrand	1	chr18	80434313	80445907	LINE	Lx7	L1	chr18Lx780445410	ProperStrand	1	1	-inf
chr17	39846428	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	179443682	179443712	SINE	B4	B4	chr1B4179443529	NonProperStrand	1	1	-inf
chr12	117581740	117581876	protein_coding	Esyt2	intron	ENSMUSG00000021171	ProperStrand	26	chr2	31198990	31199021	protein_coding	Hmcn2	intron	ENSMUSG00000055632	ProperStrand	328	5	-inf
chr15	77222585	77222646	processed_transcript	RP23-89G22.3	.	ENSMUSG00000093458	ProperStrand	2	chr15	77222854	77222938	protein_coding	Apol7a	intron	ENSMUSG00000010601	ProperStrand	19	2	-inf
chr11	109011656	109011708	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr8	105289781	105289805	protein_coding	Cdh11	intron	ENSMUSG00000031673	NonProperStrand	159	1	-4.2151
chr13	52898260	52898322	LINE	L1ME1	L1	chr13L1ME152898209	ProperStrand	1	chr13	52896195	52896247	SINE	B4	B4	chr13B452895989	NonProperStrand	1	1	-inf
chr14	121065478	121065533	LINE	Lx8	L1	chr14Lx8121065427	ProperStrand	1	chr2	22744838	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	1	-inf
chr17	39846590	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr3	135458086	135458129	LTR	MLT1C	MaLR	chr3MLT1C135458065	NonProperStrand	1	1	-inf
chr10	83376427	83376517	LINE	L1Md_A	L1	chr10L1Md_A83375946	NonProperStrand	8	chr10	83376541	83376643	LINE	L1Md_A	L1	chr10L1Md_A83376515	ProperStrand	8	8	-inf
chr7	17034361	17034386	LINE	L1Md_F3	L1	chr7L1Md_F317034170	ProperStrand	2	chr5	32963800	32963867	protein_coding	Yes1	intron	ENSMUSG00000014932	ProperStrand	31	1	-20.7076
chr1	150650782	150650882	LINE	Lx6	L1	chr1Lx6150650570	ProperStrand	1	chr1	150651080	150651170	LINE	Lx7	L1	chr1Lx7150650991	NonProperStrand	1	1	-inf
chr5	118649496	118649582	protein_coding	Rnft2	intron	ENSMUSG00000032850	NonProperStrand	136	chr5	118636230	118636292	protein_coding	Hrk	utr3	ENSMUSG00000046607	ProperStrand	51	1	-10.7068
chr4	106349176	106349276	protein_coding-noncoding	Ttc4	utr3	ENSMUSG00000025413	ProperStrand	1	chr4	106349390	106349480	protein_coding	Ttc4	intron	ENSMUSG00000025413	ProperStrand	2	1	-inf
chr4	104514480	104514575	protein_coding	C8a	intron	ENSMUSG00000035031	NonProperStrand	68	chr13	94550877	94550937	protein_coding	Arsb	intron	ENSMUSG00000042082	ProperStrand	26	2	-inf
chr12	57418197	57418228	SINE	B4A	B4	chr12B4A57418116	ProperStrand	1	chr12	57418265	57418315	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n57418271	ProperStrand	1	1	-inf
chr12	58942481	58942581	LINE	Lx9	L1	chr12Lx958942497	ProperStrand	1	chr12	58942914	58943004	LINE	Lx9	L1	chr12Lx958942854	NonProperStrand	1	1	-inf
chrX	92513884	92513974	LINE	Lx6	L1	chrXLx692513877	NonProperStrand	1	chrX	92514090	92514190	LINE	Lx6	L1	chrXLx692514039	NonProperStrand	1	1	-inf
chr17	39846736	39846763	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	5079710	5079747	LTR	RLTR13D6	ERVK	chr7RLTR13D65079699	ProperStrand	2	1	-5.3533
chr17	39846866	39846917	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	105330568	105331180	SINE	MIR	MIR	chr8MIR105331109	ProperStrand	1	1	-inf
chr4	33320557	33324902	LTR	RMER15	ERVL	chr4RMER1533320517	NonProperStrand	2	chr4	33310470	33320554	protein_coding	Srsf12	intron	ENSMUSG00000054679	ProperStrand	10	2	-inf
chr2	129178369	129178387	LINE	L1Md_F2	L1	chr2L1Md_F2129176157	NonProperStrand	5	chr17	39846602	39846657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr9	123462082	123462122	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	107741381	107741417	protein_coding	Cbfb	utr3	ENSMUSG00000031885	NonProperStrand	3	1	-7.0114
chr8	94268125	94268214	LTR	MTA_Mm	MaLR	chr8MTA_Mm94267841	NonProperStrand	1	chr8	94268268	94268368	Simple_repeat	(TA)n	Simple_repeat	chr8(TA)n94268233	ProperStrand	1	1	-inf
chr11	106066804	106066833	protein_coding-noncoding	Ccdc47	utr3	ENSMUSG00000078622	NonProperStrand	17	chr14	31497449	31497468	protein_coding	Rft1	intron	ENSMUSG00000052395	ProperStrand	7	2	-20.1774
chr16	32645793	32645879	protein_coding	Tnk2	intron	ENSMUSG00000022791	ProperStrand	153	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-3.3559
chr3	86824454	86824554	LINE	L1_Mus1	L1	chr3L1_Mus186824221	NonProperStrand	1	chr17	39847636	39847726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr9	67644579	67644688	SINE	B4	B4	chr9B467644394	NonProperStrand	1	chr1	84797559	84797601	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	124	1	-inf
chr14	78883234	78883303	SINE	B2_Mm2	B2	chr14B2_Mm278883137	NonProperStrand	1	chr19	5844972	5845051	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	1	-inf
chr2	22744836	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	819	chr6	49236498	49236553	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	1	-4.1984
chr9	123123566	123123631	protein_coding	Cdcp1	intron	ENSMUSG00000035498	NonProperStrand	6	chr11	58990131	58990187	protein_coding	Gjc2	exon	ENSMUSG00000043448	NonProperStrand	1	1	-inf
chr4	51812477	51812532	LINE	L2b	L2	chr4L2b51812342	NonProperStrand	1	chr13	12458818	12458860	LTR	ORR1A3-int	MaLR	chr13ORR1A3-int12458757	ProperStrand	2	1	-inf
chr12	112739274	112739354	LTR	MERVK26-int	ERVK	chr12MERVK26-int112738526	ProperStrand	5	chr17	39846750	39846822	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.1907
chr17	39846389	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	101604941	101605040	protein_coding	Dhx8	intron	ENSMUSG00000034931	ProperStrand	48	7	-4.1414
chr4	45420068	45420158	protein_coding-noncoding	Mcart1	utr3	ENSMUSG00000045973	ProperStrand	2	chr4	45419971	45420071	protein_coding	Mcart1	intron	ENSMUSG00000045973	ProperStrand	2	2	-inf
chr13	34058458	34058526	protein_coding	Nqo2	intron	ENSMUSG00000046949	ProperStrand	8	chr13	34056282	34056360	protein_coding	Serpinb6a	intron	ENSMUSG00000060147	NonProperStrand	10	1	-20.3048
chrX	119844211	119844301	LINE	L1Md_T	L1	chrXL1Md_T119838180	ProperStrand	1	chrX	119844521	119844621	LINE	L1Md_T	L1	chrXL1Md_T119844429	ProperStrand	1	1	-inf
chr12	4660180	4660225	protein_coding	Itsn2	intron	ENSMUSG00000020640	ProperStrand	58	chrX	137079529	137079621	protein_coding	Tsc22d3	intron	ENSMUSG00000031431	NonProperStrand	5	1	-17.2686
chr17	39847987	39848051	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	135143789	135143843	LTR	RLTR11B	ERVK	chr6RLTR11B135143664	ProperStrand	1	1	-inf
chr6	28531473	28545508	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr1	183136496	183136594	protein_coding	Wdr26	intron	ENSMUSG00000038733	ProperStrand	36	1	-7.5514
chr17	39846721	39846774	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	126501295	126502939	SINE	B4A	B4	chr7B4A126502185	NonProperStrand	3	1	-4.3017
chr8	86000619	86000645	LINE	L1Md_F	L1	chr8L1Md_F86000005	NonProperStrand	1	chr8	85975719	85975841	protein_coding	Scoc	intron	ENSMUSG00000063253	NonProperStrand	4	1	-inf
chr7	80031710	80031820	LINE	L1Md_F2	L1	chr7L1Md_F280031647	ProperStrand	3	chr17	39847284	39847321	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-5.4882
chr16	17222212	17222241	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	11	chr9	123461866	123461885	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-4.1956
chr16	4577720	4577810	SINE	B2_Mm2	B2	chr16B2_Mm24577652	ProperStrand	1	chr16	4578174	4578274	SINE	B3	B2	chr16B34578084	ProperStrand	1	1	-inf
chr15	68205076	68205176	LINE	L1Md_T	L1	chr15L1Md_T68199723	NonProperStrand	7	chr15	68205296	68205386	LINE	L1Md_T	L1	chr15L1Md_T68205197	NonProperStrand	3	1	-inf
chr18	46878558	46878658	protein_coding	Cdo1	intron	ENSMUSG00000033022	NonProperStrand	1	chr18	45724597	45724687	protein_coding	Kcnn2	intron	ENSMUSG00000054477	ProperStrand	38	1	-inf
chr17	39846954	39847002	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	75544693	75545817	SINE	B1_Mur1	Alu	chr11B1_Mur175545727	NonProperStrand	1	1	-inf
chr3	96270006	96270106	LTR	RLTR18	ERVK	chr3RLTR1896269835	NonProperStrand	37	chr12	109679945	109679978	protein_coding	Eml1	intron	ENSMUSG00000058070	ProperStrand	498	1	-8.7620
chr11	109011693	109011987	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr10	88475387	88475404	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	37	1	-7.0595
chr4	152523601	152523665	SINE	B2_Mm2	B2	chr4B2_Mm2152523604	ProperStrand	1	chr13	44869594	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr4	86599392	86600769	LINE	L1MA4A	L1	chr4L1MA4A86599337	ProperStrand	1	chr4	54973282	54973370	protein_coding	Zfp462	intron	ENSMUSG00000060206	ProperStrand	174	1	-inf
chr17	39847105	39847134	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr12	110571517	110571536	Other	RMER1C	Other	chr12RMER1C110571279	ProperStrand	2	1	-6.5615
chr18	37769408	37769498	LTR	MER68-int	ERVL	chr18MER68-int37769252	NonProperStrand	1	chr18	37865113	37865213	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	112	1	-inf
chr17	43642430	43642517	LINE	Lx4B	L1	chr17Lx4B43642196	NonProperStrand	1	chr17	39843744	39843806	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	1	-inf
chr5	23852209	23852276	protein_coding	Kcnh2	intron	ENSMUSG00000038319	NonProperStrand	16	chr1	131916469	131916548	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	276	1	-11.6492
chr3	32417373	32417488	protein_coding	Zfp639	intron	ENSMUSG00000027667	ProperStrand	4	chr5	90228471	90228487	protein_coding	Adamts3	intron	ENSMUSG00000043635	ProperStrand	70	1	-17.4765
chr9	88454111	88454177	protein_coding	Zfp949	intron	ENSMUSG00000032425	NonProperStrand	42	chr11	107095785	107095841	protein_coding	Pitpnc1	intron	ENSMUSG00000040430	ProperStrand	310	1	-9.4512
chr17	39846822	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	97083488	97083567	LTR	RLTR31A_Mm	ERVK	chr9RLTR31A_Mm97083074	NonProperStrand	2	1	-5.3533
chr13	114018734	114018824	LINE	L1_Mm	L1	chr13L1_Mm114018731	NonProperStrand	3	chr13	114018828	114018928	LINE	L1_Mus3	L1	chr13L1_Mus3114018850	ProperStrand	2	2	-inf
chrX	159115052	159115152	LTR	ORR1A4-int	MaLR	chrXORR1A4-int159115080	NonProperStrand	2	chrX	159115349	159115439	LTR	ORR1A4	MaLR	chrXORR1A4159115151	NonProperStrand	2	2	-inf
chr2	87482148	87482248	LINE	L1_Rod	L1	chr2L1_Rod87482066	NonProperStrand	1	chr2	87481773	87481863	LINE	Lx4B	L1	chr2Lx4B87481135	NonProperStrand	1	1	-inf
chr14	31016214	31016249	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	256	chr12	79680180	79680301	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-4.0983
chr9	40803582	40803666	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	chr7	126795484	126795627	protein_coding	Acsm1	intron	ENSMUSG00000033533	NonProperStrand	304	1	-4.2743
chr17	39845290	39845357	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr2	122061059	122064984	protein_coding	Sord	intron	ENSMUSG00000027227	NonProperStrand	25	1	-3.8093
chr6	35539548	35539601	LINE	L1Md_F2	L1	chr6L1Md_F235533714	ProperStrand	2	chr17	39846802	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chrX	166109538	166109628	DNA	MER20	MER1_type	chrXMER20166109410	NonProperStrand	1	chrX	166109307	166109407	SINE	RSINE1	B4	chrXRSINE1166109265	ProperStrand	1	1	-inf
chr3	79873845	79873945	LTR	MTEa	MaLR	chr3MTEa79873663	ProperStrand	1	chr3	79873531	79873621	LTR	ORR1D1	MaLR	chr3ORR1D179873312	ProperStrand	1	1	-inf
chr17	56211730	56211765	protein_coding	Ubxn6	intron	ENSMUSG00000019578	ProperStrand	8	chr11	119991543	119991568	protein_coding	Slc38a10	intron	ENSMUSG00000061306	NonProperStrand	60	1	-16.1864
chr5	56822921	56823011	LINE	L1Md_F2	L1	chr5L1Md_F256822063	NonProperStrand	1	chr5	86060791	86060891	SINE	B3	B2	chr5B386060768	NonProperStrand	1	1	-inf
chr10	114292372	114292472	LTR	RLTR41	ERV1	chr10RLTR41114292395	ProperStrand	1	chr10	114292171	114292261	SINE	B4	B4	chr10B4114292115	ProperStrand	1	1	-inf
chr11	86059985	86060075	antisense	4632419I22Rik	.	ENSMUSG00000085208	ProperStrand	3	chr2	48116288	48116388	lincRNA	Gm13481	intron	ENSMUSG00000086353	NonProperStrand	9	1	-21.6921
chr19	5844050	5844150	non_coding	Neat1	.	ENSMUSG00000092274	ProperStrand	226	chr8	117334184	117334274	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	1161	1	-3.5824
chr13	40919971	40920061	LTR	ORR1A2	MaLR	chr13ORR1A240919802	ProperStrand	6	chr13	40920144	40920244	LTR	RLTR42-int	ERVK	chr13RLTR42-int40920132	ProperStrand	1	1	-inf
chr8	107654316	107654375	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n107654318	NonProperStrand	1	chr19	5798091	5798172	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	1	-inf
chr4	75530823	75530923	LINE	L1MC	L1	chr4L1MC75530644	NonProperStrand	1	chr4	75530547	75530637	LINE	Lx8	L1	chr4Lx875530086	NonProperStrand	1	1	-inf
chr19	61175169	61175207	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	NonProperStrand	3	chr18	4664618	4664667	protein_coding	9430020K01Rik	intron	ENSMUSG00000033960	ProperStrand	14	1	-20.0603
chr7	30584764	30585062	LTR	RMER17B	ERVK	chr7RMER17B30584933	ProperStrand	2	chr2	38725436	38725466	protein_coding	Nr6a1	intron	ENSMUSG00000063972	ProperStrand	112	1	-18.2026
chr12	110759660	110759750	LINE	L1M5	L1	chr12L1M5110759616	ProperStrand	1	chr12	110759792	110759892	SINE	B1F	Alu	chr12B1F110759789	ProperStrand	1	1	-inf
chr17	39847834	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	63334900	63334963	protein_coding	Zdbf2	intron	ENSMUSG00000027520	ProperStrand	2	1	-5.4040
chr17	39846818	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr19	18624711	18624843	SINE	B1_Mus2	Alu	chr19B1_Mus218624704	ProperStrand	1	1	-inf
chr12	78350926	78351022	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	1304	chr5	24402096	24402112	protein_coding	Prkag2	intron	ENSMUSG00000028944	ProperStrand	69	1	-5.6219
chr5	109950345	110014536	LINE	L1_Mur2	L1	chr5L1_Mur2110012316	ProperStrand	1	chr14	78614711	78614801	LTR	ORR1A2	MaLR	chr14ORR1A278614619	ProperStrand	1	1	-inf
chr14	47478969	47479074	LINE	Lx	L1	chr14Lx47474747	NonProperStrand	3	chr13	97190561	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-11.4303
chr17	39847349	39847379	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	136545840	136545889	SINE	MIRm	MIR	chr1MIRm136545813	ProperStrand	1	1	-inf
chr17	39847359	39847377	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr8	71648670	71648693	LTR	MTD	MaLR	chr8MTD71648552	ProperStrand	1	1	-inf
chr11	8460588	8460660	protein_coding	Tns3	intron	ENSMUSG00000020422	ProperStrand	461	chr4	86478546	86478607	protein_coding	Dennd4c	intron	ENSMUSG00000038024	ProperStrand	38	1	-8.8620
chr2	132066526	132066590	protein_coding	5730494N06Rik	intron	ENSMUSG00000027341	ProperStrand	11	chr3	153912209	153912283	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	1	-12.3291
chr7	12296422	12296512	LINE	L1Md_F	L1	chr7L1Md_F12291646	NonProperStrand	1	chr7	12296706	12296806	LINE	Lx4A	L1	chr7Lx4A12296714	NonProperStrand	1	1	-inf
chr2	132143486	132143559	LINE	L1Md_F2	L1	chr2L1Md_F2132143393	NonProperStrand	1	chr2	132143230	132143255	LTR	ORR1B1	MaLR	chr2ORR1B1132143107	NonProperStrand	1	1	-inf
chr7	136979559	136979590	SINE	B4A	B4	chr7B4A136979509	ProperStrand	4	chr7	136978810	136978831	SINE	ID_B1	B4	chr7ID_B1136978681	NonProperStrand	1	1	-inf
chr13	112578225	112578297	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr2	146299473	146299493	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	NonProperStrand	19	1	-6.4601
chr17	39847257	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr7	34109595	34109627	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int34108285	ProperStrand	1	1	-inf
chr12	75715971	75715987	LINE	L1Md_F2	L1	chr12L1Md_F275715911	NonProperStrand	1	chr17	39847222	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr6	124715438	124715506	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	142	chr8	126937079	126937127	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	1	-9.0064
chr11	103063743	103063795	protein_coding	1700023F06Rik	intron	ENSMUSG00000020940	NonProperStrand	20	chr11	113663497	113677309	protein_coding	Sdk2	intron	ENSMUSG00000041592	ProperStrand	144	1	-12.4930
chr5	135409789	135409909	protein_coding	Wbscr27	intron	ENSMUSG00000040557	NonProperStrand	4	chr16	19883804	19883926	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-14.5811
chr12	36718142	36718160	LTR	MLT1B	MaLR	chr12MLT1B36718113	NonProperStrand	1	chr17	39843654	39843682	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr16	35778134	35778224	protein_coding	Hspbap1	intron	ENSMUSG00000022849	ProperStrand	190	chrX	139243817	139243917	protein_coding	Tmem164	intron	ENSMUSG00000047045	ProperStrand	5	1	-14.8765
chr2	146939223	146939288	SINE	B1F	Alu	chr2B1F146939172	NonProperStrand	1	chr9	64310507	64311448	protein_coding	Megf11	intron	ENSMUSG00000036466	NonProperStrand	40	1	-inf
chr6	132197576	132197666	LINE	L1Md_T	L1	chr6L1Md_T132195515	ProperStrand	1	chr6	124052692	124052792	LINE	Lx8	L1	chr6Lx8124052205	NonProperStrand	1	1	-inf
chr17	39846818	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	103796068	103796154	LTR	RMER17C	ERVK	chr5RMER17C103795678	NonProperStrand	1	1	-inf
chr17	39847249	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr2	121139385	121139465	protein_coding	Ppip5k1	intron	ENSMUSG00000033526	ProperStrand	5	1	-4.3348
chr11	3309590	3309653	DNA	MER2	MER2_type	chr11MER23309602	NonProperStrand	1	chr17	39847958	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr18	4790145	4790235	LINE	L1_Mus4	L1	chr18L1_Mus44789942	NonProperStrand	1	chr18	4789732	4789832	LTR	MTD-int	MaLR	chr18MTD-int4789749	NonProperStrand	1	1	-inf
chr6	83861773	83861873	LINE	L1_Mus3	L1	chr6L1_Mus383861789	ProperStrand	1	chr6	83861444	83861534	LTR	MYSERV-int	ERVK	chr6MYSERV-int83860857	NonProperStrand	1	1	-inf
chr6	72314332	72314407	LTR	MTD-int	MaLR	chr6MTD-int72314318	NonProperStrand	1	chr6	72313989	72314033	LTR	MTD	MaLR	chr6MTD72313695	NonProperStrand	1	1	-inf
chr3	31206279	31206349	lincRNA	Gm15496	intron	ENSMUSG00000085953	ProperStrand	11	chr11	97249298	97249756	protein_coding	Socs7	intron	ENSMUSG00000038485	NonProperStrand	32	2	-20.6137
chr4	33413301	33413389	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	100	chr5	135934387	135934412	protein_coding	Hip1	intron	ENSMUSG00000039959	ProperStrand	226	1	-8.3417
chr15	59471199	59471272	LTR	MLT1H1	MaLR	chr15MLT1H159471149	NonProperStrand	1	chr9	123461802	123461823	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	86251290	86251390	LINE	L1_Mur2	L1	chrXL1_Mur286251131	NonProperStrand	2	chrX	86251432	86251522	LINE	L1_Mur2	L1	chrXL1_Mur286251416	NonProperStrand	2	2	-inf
chr7	126181710	126181800	LINE	L1M4c	L1	chr7L1M4c126181725	ProperStrand	2	chr7	126181561	126181662	Low_complexity	GA-rich	Low_complexity	chr7GA-rich126181516	NonProperStrand	2	2	-inf
chr4	83329332	83329376	protein_coding	4930473A06Rik	intron	ENSMUSG00000052407	ProperStrand	113	chr11	85238342	85238402	protein_coding	Bcas3	intron	ENSMUSG00000059439	ProperStrand	213	1	-8.2159
chr8	72739438	72739816	SINE	B4A	B4	chr8B4A72739603	NonProperStrand	3	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-12.9165
chr16	91660233	91660333	protein_coding	Son	exon	ENSMUSG00000022961	ProperStrand	70	chr7	112855489	112855579	protein_coding	Dnhd1	intron	ENSMUSG00000030882	ProperStrand	238	1	-8.9519
chr9	106884786	106884873	protein_coding	Dock3	intron	ENSMUSG00000039716	ProperStrand	67	chrX	7945267	7945332	protein_coding	Ssxb9	intron	ENSMUSG00000068218	NonProperStrand	7	1	-16.2394
chr6	7677966	7678023	LTR	ETnERV2-int	ERVK	chr6ETnERV2-int7677854	ProperStrand	1	chr7	109520195	109520254	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	178	1	-inf
chr2	143139697	143139787	LINE	Lx8	L1	chr2Lx8143139522	ProperStrand	1	chr1	138646664	138646764	LTR	MTA_Mm	MaLR	chr1MTA_Mm138646571	ProperStrand	1	1	-inf
chr7	27825545	27825635	LINE	L1Md_F2	L1	chr7L1Md_F227825341	NonProperStrand	6	chr7	27825807	27825907	LTR	MERVL_2A-int	ERVL	chr7MERVL_2A-int27825755	ProperStrand	6	6	-inf
chr13	112578225	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	3141	chr18	86594655	86594678	protein_coding	Neto1	intron	ENSMUSG00000050321	NonProperStrand	5	1	-9.2705
chr12	51660107	51660183	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	chr17	29347709	29347739	protein_coding	Cpne5	intron	ENSMUSG00000024008	ProperStrand	28	1	-12.8177
chr8	71959720	71959817	LINE	L1VL4	L1	chr8L1VL471959418	ProperStrand	5	chr9	123461957	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-5.8308
chr17	39843828	39843890	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr2	29621714	29621802	protein_coding	Gm13547	utr3	ENSMUSG00000075425	ProperStrand	13	1	-5.9171
chr3	159223638	159223738	LINE	L1Md_F3	L1	chr3L1Md_F3159222959	NonProperStrand	1	chr10	122566270	122566360	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	47	1	-inf
chr9	118674951	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	chr14	52075081	52075279	protein_coding	Vmn2r89	intron	ENSMUSG00000070448	NonProperStrand	29	2	-11.9247
chr17	70963693	70963760	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr11	116046277	116046354	protein_coding	Acox1	intron	ENSMUSG00000020777	NonProperStrand	71	1	-5.8761
chr6	88505019	88505168	protein_coding	Kbtbd12	intron	ENSMUSG00000033182	ProperStrand	28	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	2	-16.0824
chr1	36861694	36861761	protein_coding	Tmem131	intron	ENSMUSG00000026116	ProperStrand	222	chr9	40804358	40804534	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	1	-4.8729
chr17	39847736	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	157325734	157325760	SINE	B2_Mm1a	B2	chr2B2_Mm1a157325688	NonProperStrand	2	1	-5.4040
chr11	69448422	69448438	protein_coding	Fxr2	intron	ENSMUSG00000018765	ProperStrand	5	chr5	144771472	144771498	protein_coding	Ccz1	intron	ENSMUSG00000029617	NonProperStrand	51	1	-17.6350
chr19	9972857	9972957	protein_coding	Incenp	intron	ENSMUSG00000024660	NonProperStrand	3	chr19	9085047	9085137	protein_coding	Ahnak	exon	ENSMUSG00000069833	NonProperStrand	9	1	-21.6921
chr7	118104120	118104146	protein_coding	Mrvi1	intron	ENSMUSG00000005611	ProperStrand	87	chr4	34981983	34982053	protein_coding	Mob3b	intron	ENSMUSG00000073910	ProperStrand	86	1	-10.5517
chr12	101851469	101851569	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	NonProperStrand	8	chr12	101873153	101873243	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	ProperStrand	99	1	-15.1610
chr3	123949966	123950056	LTR	RLTR40	ERVK	chr3RLTR40123949956	NonProperStrand	1	chr3	123949795	123949895	Simple_repeat	(GA)n	Simple_repeat	chr3(GA)n123949776	NonProperStrand	1	1	-inf
chr17	39845747	39845837	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr8	95845805	95845905	protein_coding	Ces1g	intron	ENSMUSG00000057074	ProperStrand	20	1	-4.2357
chr17	39847129	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr9	106433444	106433512	Other	RMER1C	Other	chr9RMER1C106433127	NonProperStrand	2	1	-6.5615
chr2	90949281	90949345	protein_coding	Sfpi1	intron	ENSMUSG00000002111	ProperStrand	32	chr1	180811933	180813498	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	62	1	-13.2279
chr6	82687869	82687967	protein_coding	Hk2	intron	ENSMUSG00000000628	ProperStrand	54	chr9	96746685	96746736	protein_coding	Acpl2	intron	ENSMUSG00000043587	ProperStrand	23	1	-14.1766
chr2	127810945	127811008	protein_coding	Acoxl	intron	ENSMUSG00000027380	NonProperStrand	44	chr14	8055516	8055612	protein_coding	Gm3715	utr3	ENSMUSG00000072731	NonProperStrand	4	2	-inf
chr17	39843528	39843586	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr15	3982419	3982463	protein_coding	Oxct1	intron	ENSMUSG00000022186	NonProperStrand	14	1	-5.3047
chr7	73441183	73441210	protein_coding	Lrrk1	intron	ENSMUSG00000015133	ProperStrand	120	chr5	8437543	8437630	protein_coding	Slc25a40	intron	ENSMUSG00000054099	ProperStrand	50	1	-10.9977
chr6	66501649	66501749	LTR	RMER12	ERVK	chr6RMER1266501427	NonProperStrand	1	chr6	66501980	66502070	LTR	RMER12	ERVK	chr6RMER1266501883	NonProperStrand	1	1	-inf
chr5	146261128	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr10	85449328	85449369	protein_coding	Bpifc	intron	ENSMUSG00000050108	NonProperStrand	43	1	-5.7137
chr7	6650906	6650991	LTR	MTE2b	MaLR	chr7MTE2b6650869	NonProperStrand	1	chr6	71882555	71882612	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-inf
chr5	146261151	146261202	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr6	124742854	124742870	SINE	ID_B1	B4	chr6ID_B1124742836	NonProperStrand	1	1	-inf
chr8	72464255	72464326	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	157	chr6	124477825	124477883	protein_coding	C1rb	intron	ENSMUSG00000092005	ProperStrand	20	1	-12.3203
chr17	39847843	39847871	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr1	92203156	92203174	LTR	MLT2B3	ERVL	chr1MLT2B392202993	ProperStrand	3	1	-4.3512
chr7	47186421	47186511	SINE	PB1D10	Alu	chr7PB1D1047186421	NonProperStrand	4	chr8	94447013	94447113	SINE	MIR	MIR	chr8MIR94446955	ProperStrand	1	1	-inf
chr5	29365176	29378196	LINE	L1_Mus3	L1	chr5L1_Mus329372701	ProperStrand	6	chr5	29378198	29378288	LINE	L1_Mus3	L1	chr5L1_Mus329374229	ProperStrand	7	3	-inf
chr2	124662131	124662149	LINE	L1_Mur2	L1	chr2L1_Mur2124661599	ProperStrand	5	chr2	5379232	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-9.6307
chr13	106916591	106916651	LINE	L1Md_F2	L1	chr13L1Md_F2106916331	NonProperStrand	1	chr9	110281293	110281319	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	559	1	-inf
chr13	104299198	104299298	LINE	L1MDa	L1	chr13L1MDa104299225	NonProperStrand	1	chr13	104298987	104299077	LINE	Lx8	L1	chr13Lx8104298997	NonProperStrand	1	1	-inf
chr5	105808815	105808872	LINE	L1Md_F2	L1	chr5L1Md_F2105808037	NonProperStrand	3	chr17	39847989	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-4.3512
chr17	39846505	39846535	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	162954297	162954412	protein_coding	Tceanc	intron	ENSMUSG00000051224	NonProperStrand	4	1	-3.6552
chr2	130424093	130424192	protein_coding	Ubox5	intron	ENSMUSG00000027300	ProperStrand	2	chr2	119773175	119773235	protein_coding	Mga	exon	ENSMUSG00000033943	NonProperStrand	66	1	-18.9169
chr11	109375216	109375306	protein_coding	Arsg	intron	ENSMUSG00000020604	ProperStrand	62	chr13	97190601	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.0586
chr7	133813155	133813174	protein_coding	Ccdc101	intron	ENSMUSG00000030714	NonProperStrand	1	chr4	120446028	120446113	protein_coding	Nfyc	intron	ENSMUSG00000032897	NonProperStrand	13	1	-inf
chr8	78536689	78536790	LINE	L1_Mus3	L1	chr8L1_Mus378536676	NonProperStrand	1	chr8	78536594	78536684	LTR	MTD	MaLR	chr8MTD78536530	NonProperStrand	1	1	-inf
chr6	3201469	3201531	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr10	75648083	75648135	protein_coding	Slc5a4a	intron	ENSMUSG00000020229	NonProperStrand	35	1	-3.8833
chr5	115490291	115490398	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr15	59324539	59324556	protein_coding	Nsmce2	intron	ENSMUSG00000059586	NonProperStrand	38	1	-10.0748
chr1	156067531	156067621	LTR	ORR1B1-int	MaLR	chr1ORR1B1-int156067429	NonProperStrand	1	chr1	156067639	156067739	LTR	ORR1B1-int	MaLR	chr1ORR1B1-int156067551	NonProperStrand	1	1	-inf
chrX	56792002	56792064	protein_coding	Fgf13	intron	ENSMUSG00000031137	NonProperStrand	55	chr13	44869596	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	2	-7.7329
chr16	84717951	84717973	protein_coding	Mrpl39	utr3	ENSMUSG00000022889	ProperStrand	7	chr4	9585277	9585377	protein_coding	Asph	intron	ENSMUSG00000028207	ProperStrand	35	1	-17.5090
chrX	144337693	144337715	LINE	L1Md_F2	L1	chrXL1Md_F2144337102	ProperStrand	1	chr2	92235614	92235745	protein_coding	Mapk8ip1	intron	ENSMUSG00000027223	NonProperStrand	15	1	-inf
chrX	52705536	52705626	LTR	RMER15	ERVL	chrXRMER1552705449	ProperStrand	1	chrX	52705802	52705902	LTR	RMER15	ERVL	chrXRMER1552705539	ProperStrand	1	1	-inf
chr17	34905995	34906177	LTR	RLTR13D6	ERVK	chr17RLTR13D634905863	ProperStrand	2	chr17	34906226	34906408	LTR	RLTR13D6	ERVK	chr17RLTR13D634906039	ProperStrand	2	1	-19.8939
chr14	70762293	70762361	LINE	L1_Mus3	L1	chr14L1_Mus370761900	NonProperStrand	6	chr7	82698961	82699019	protein_coding	Akap13	intron	ENSMUSG00000066406	ProperStrand	108	3	-inf
chr17	39847444	39847538	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	132311680	132311715	protein_coding	Gm8882	exon	ENSMUSG00000030143	NonProperStrand	1	1	-inf
chr5	144987666	144987766	SINE	B2_Mm2	B2	chr5B2_Mm2144987645	ProperStrand	1	chr5	144987933	144988023	SINE	B4A	B4	chr5B4A144987869	ProperStrand	1	1	-inf
chr16	16966863	16966963	SINE	B3A	B2	chr16B3A16966831	NonProperStrand	1	chr16	16966610	16966700	SINE	B4A	B4	chr16B4A16966501	NonProperStrand	1	1	-inf
chr17	80204372	80205299	LTR	ORR1B2	MaLR	chr17ORR1B280205136	NonProperStrand	3	chr17	80206016	80207200	LTR	RLTR41	ERV1	chr17RLTR4180206967	NonProperStrand	6	1	-inf
chr9	24994130	24994220	LTR	MTC	MaLR	chr9MTC24993905	ProperStrand	1	chr9	24994258	24994358	SINE	B1_Mm	Alu	chr9B1_Mm24994267	ProperStrand	1	1	-inf
chr16	46753425	46753525	LINE	L1MEc	L1	chr16L1MEc46753393	ProperStrand	1	chr14	33968124	33968214	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	110	1	-inf
chr4	88186901	88186991	LINE	Lx3C	L1	chr4Lx3C88185280	NonProperStrand	1	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-inf
chr2	130714931	130714992	processed_transcript	A730017L22Rik	.	ENSMUSG00000085566	ProperStrand	13	chr1	153456444	153456527	protein_coding	Fam129a	intron	ENSMUSG00000026483	NonProperStrand	109	1	-13.9432
chr7	137049014	137049114	LINE	L1VL4	L1	chr7L1VL4137048693	NonProperStrand	2	chr9	123461985	123462012	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr15	98749331	98749409	SINE	PB1D10	Alu	chr15PB1D1098749324	ProperStrand	1	chr15	98748088	98748168	protein_coding-noncoding	Lmbr1l	utr3	ENSMUSG00000022999	ProperStrand	9	1	-inf
chr12	17925956	17926008	LTR	ETnERV3-int	ERVK	chr12ETnERV3-int17925821	NonProperStrand	2	chr13	114107372	114107443	protein_coding	BC067074	exon	ENSMUSG00000021763	ProperStrand	92	1	-18.4814
chr6	44204821	44204921	LINE	Lx7	L1	chr6Lx744203891	NonProperStrand	2	chr17	39846660	39846701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr2	150389000	150389055	Simple_repeat	(GAAA)n	Simple_repeat	chr2(GAAA)n150388990	NonProperStrand	1	chr5	110806853	110806918	protein_coding	Fbrsl1	intron	ENSMUSG00000043323	ProperStrand	131	1	-inf
chr6	51578050	51578089	LINE	Lx4A	L1	chr6Lx4A51577954	NonProperStrand	3	chr6	51577658	51577687	LTR	MLT1A	MaLR	chr6MLT1A51577631	ProperStrand	1	1	-inf
chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	22047859	22047951	LTR	MER31A	ERV1	chr9MER31A22047851	NonProperStrand	1	1	-inf
chr10	14687631	14687690	LTR	RLTR9A	ERVK	chr10RLTR9A14687571	NonProperStrand	1	chr17	39847918	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr4	3927157	3927201	protein_coding	Sdr16c5	intron	ENSMUSG00000028236	ProperStrand	16	chr9	100830334	100830396	protein_coding	Stag1	exon	ENSMUSG00000037286	ProperStrand	83	1	-14.0606
chr5	125452782	125452882	SINE	B1_Mm	Alu	chr5B1_Mm125452792	ProperStrand	1	chr5	125452628	125452718	SINE	B4	B4	chr5B4125452622	ProperStrand	1	1	-inf
chr2	144261985	144270459	LINE	Lx8	L1	chr2Lx8144269682	NonProperStrand	10	chr2	144270703	144270794	Simple_repeat	(CCA)n	Simple_repeat	chr2(CCA)n144270686	NonProperStrand	9	5	-inf
chr14	18747552	18747593	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	168	chr8	123426510	123426561	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	769	2	-8.1059
chrX	103463610	103463674	LINE	L1Md_F3	L1	chrXL1Md_F3103463398	NonProperStrand	1	chr14	14112587	14114184	protein_coding	Gm5087	intron	ENSMUSG00000051729	ProperStrand	16	1	-inf
chr13	9224783	9224883	LINE	L1Md_T	L1	chr13L1Md_T9224301	ProperStrand	1	chr5	30060682	30060772	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	28	1	-inf
chr7	24682199	24682299	LINE	Lx4A	L1	chr7Lx4A24682009	NonProperStrand	1	chr7	24682373	24682463	SINE	B1_Mur4	Alu	chr7B1_Mur424682388	ProperStrand	1	1	-inf
chr3	89175904	89175947	SINE	B2_Mm2	B2	chr3B2_Mm289175752	NonProperStrand	1	chr3	89176107	89176160	SINE	B3	B2	chr3B389175966	NonProperStrand	2	1	-inf
chr7	12871859	12871959	LINE	L1Md_T	L1	chr7L1Md_T12868555	NonProperStrand	3	chr6	105492406	105492496	SINE	B1_Mm	Alu	chr6B1_Mm105492415	ProperStrand	7	1	-25.2264
chr3	53572528	53574540	LTR	ORR1C2	MaLR	chr3ORR1C253574393	ProperStrand	1	chr6	128275963	128276028	protein_coding	Tulp3	intron	ENSMUSG00000001521	ProperStrand	15	1	-inf
chr12	31943103	31943162	LINE	Lx3_Mus	L1	chr12Lx3_Mus31942882	NonProperStrand	1	chr17	39845845	39846008	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	1	-inf
chr17	39846658	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	28712700	28712771	protein_coding-noncoding	1700049G17Rik	utr3	ENSMUSG00000070709	ProperStrand	1	1	-inf
chr16	19049307	19049377	LINE	L1Md_F2	L1	chr16L1Md_F219048955	ProperStrand	4	chr16	19051192	19051252	LINE	L1Md_F2	L1	chr16L1Md_F219050430	ProperStrand	3	1	-inf
chr10	93248555	93248655	LTR	RLTR45-int	ERVK	chr10RLTR45-int93248567	ProperStrand	1	chr10	93248458	93248548	LTR	RLTR45	ERVK	chr10RLTR4593248096	ProperStrand	1	1	-inf
chr7	62948900	62948990	LINE	L1Md_A	L1	chr7L1Md_A62945320	ProperStrand	1	chr10	122296168	122296268	protein_coding	Ppm1h	intron	ENSMUSG00000034613	NonProperStrand	4	1	-inf
chr6	3201480	3201535	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chrX	7947655	7947712	protein_coding	Ssxb9	exon	ENSMUSG00000068218	NonProperStrand	7	1	-7.1107
chr5	29651392	29651437	protein_coding	Lmbr1	intron	ENSMUSG00000010721	NonProperStrand	89	chr8	124747737	124747812	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	1109	1	-5.4395
chr17	39846961	39847022	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	102468423	102468474	Low_complexity	GA-rich	Low_complexity	chr7GA-rich102468361	ProperStrand	1	1	-inf
chr16	45895968	45896068	protein_coding	Phldb2	intron	ENSMUSG00000033149	ProperStrand	4	chr16	66707396	66707486	protein_coding	Cadm2	intron	ENSMUSG00000064115	NonProperStrand	20	1	-20.7310
chr3	89010858	89010889	protein_coding	Gba	intron	ENSMUSG00000028048	ProperStrand	5	chr9	56223819	56223911	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-13.6631
chr5	3606363	3607692	protein_coding	Pex1	exon	ENSMUSG00000005907	ProperStrand	26	chr6	71882558	71882584	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	128	1	-12.1934
chr10	86955772	86955862	protein_coding	Ascl1	utr5	ENSMUSG00000020052	NonProperStrand	1	chr10	86639915	86640015	protein_coding	1700113H08Rik	intron	ENSMUSG00000047129	ProperStrand	7	1	-inf
chr8	84971293	84971341	LINE	L1Md_F3	L1	chr8L1Md_F384971280	ProperStrand	1	chr17	39847841	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr1	165866247	165866338	protein_coding	Scyl3	intron	ENSMUSG00000026584	NonProperStrand	38	chr16	4647102	4647157	protein_coding	Coro7	intron	ENSMUSG00000039637	ProperStrand	312	1	-9.6403
chr1	175896613	175896668	protein_coding	Ifi202b	intron	ENSMUSG00000026535	NonProperStrand	32	chr15	80826028	80826066	protein_coding	Sgsm3	intron	ENSMUSG00000042303	ProperStrand	42	1	-14.0160
chr13	4543477	4543567	LINE	L1_Mur3	L1	chr13L1_Mur34543450	NonProperStrand	1	chr13	4543674	4543774	LINE	Lx4A	L1	chr13Lx4A4543554	NonProperStrand	2	1	-inf
chr16	38582019	38585198	protein_coding	Tmem39a	intron	ENSMUSG00000002845	ProperStrand	41	chr16	35981616	35981643	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	1	-10.6540
chr3	105955973	105956035	protein_coding	Chi3l3	intron	ENSMUSG00000040809	ProperStrand	17	chr5	67804093	67804171	protein_coding	Bend4	intron	ENSMUSG00000092060	ProperStrand	30	1	-15.9853
chr5	146261141	146261177	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	52157832	52157848	SINE	B1_Mur3	Alu	chr11B1_Mur352157767	NonProperStrand	1	1	-inf
chr10	46565114	46565214	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n46565074	NonProperStrand	2	chr10	46565227	46565317	Simple_repeat	(CATATA)n	Simple_repeat	chr10(CATATA)n46565244	NonProperStrand	2	2	-inf
chr17	24205634	24205651	protein_coding	Kctd5	intron	ENSMUSG00000016946	ProperStrand	24	chr4	53860729	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	219	1	-11.2804
chr3	103284132	103284199	LINE	L1MC5	L1	chr3L1MC5103284112	NonProperStrand	1	chr3	103284018	103284080	LINE	L1ME4a	L1	chr3L1ME4a103283815	NonProperStrand	1	1	-inf
chr17	39847160	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr14	45335022	45337543	protein_coding	Gm8267	exon	ENSMUSG00000091923	NonProperStrand	4	1	-4.8204
chr1	132987574	132987612	protein_coding	Mapkapk2	intron	ENSMUSG00000016528	ProperStrand	169	chr19	56558191	56558309	protein_coding	9930023K05Rik	intron	ENSMUSG00000035818	ProperStrand	19	1	-12.2770
chr4	53528713	53536330	protein_coding	Slc44a1	intron	ENSMUSG00000028412	ProperStrand	88	chr9	47575563	47575655	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	1	-8.7433
chr19	10526938	10527030	protein_coding	Syt7	utr3	ENSMUSG00000024743	ProperStrand	3	chr6	51483067	51483098	protein_coding	Snx10	intron	ENSMUSG00000038301	ProperStrand	60	1	-18.4556
chr17	39844675	39844700	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	7718	chr10	127521075	127522337	protein_coding	Atp5b	intron	ENSMUSG00000025393	NonProperStrand	26	1	-4.1053
chr2	90772259	90772298	LTR	RLTR6-int	ERV1	chr2RLTR6-int90771590	ProperStrand	2	chr9	118674951	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	1255	1	-13.4011
chr17	39848128	39848210	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr19	5900278	5900334	protein_coding-noncoding	Dpf2	utr3	ENSMUSG00000024826	ProperStrand	8	1	-5.1688
chr17	39846816	39846843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	87835812	87835930	SINE	B2_Mm2	B2	chr8B2_Mm287835768	ProperStrand	1	1	-inf
chr6	120612418	120612508	SINE	B1_Mur2	Alu	chr6B1_Mur2120612372	ProperStrand	1	chr6	120612621	120612721	SINE	B3	B2	chr6B3120612537	ProperStrand	1	1	-inf
chr19	50534295	50534385	protein_coding	Sorcs1	intron	ENSMUSG00000043531	NonProperStrand	8	chr19	48414922	48415022	protein_coding	Sorcs3	intron	ENSMUSG00000063434	ProperStrand	11	1	-20.8373
chr17	39847440	39847457	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	39163834	39163851	SINE	B3	B2	chr14B339163711	ProperStrand	1	1	-inf
chr17	39846951	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	129079042	129080381	SINE	B1_Mur3	Alu	chr4B1_Mur3129079508	ProperStrand	1	1	-inf
chr13	96684351	96684417	LINE	L1Md_F2	L1	chr13L1Md_F296683821	NonProperStrand	1	chr13	96683574	96683631	LTR	MLT2D	ERVL	chr13MLT2D96683588	NonProperStrand	1	1	-inf
chr2	32363106	32363815	SINE	ID_B1	B4	chr2ID_B132363059	ProperStrand	1	chr9	123461997	123462050	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr3	90388814	90388877	SINE	MIRb	MIR	chr3MIRb90388775	NonProperStrand	2	chr5	114852015	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	1	-16.7741
chr17	13017284	13017374	antisense	Airn	.	ENSMUSG00000078247	ProperStrand	40	chr10	82167385	82167485	protein_coding	Hcfc2	intron	ENSMUSG00000020246	ProperStrand	29	3	-inf
chr1	47672298	47672388	LINE	L1Md_T	L1	chr1L1Md_T47672205	NonProperStrand	1	chr1	47672481	47672582	LINE	L1Md_T	L1	chr1L1Md_T47672456	ProperStrand	1	1	-inf
chr18	24461709	24461809	DNA	RCHARR1	MER1_type	chr18RCHARR124461738	NonProperStrand	4	chr18	24461800	24461890	SINE	B1_Mur2	Alu	chr18B1_Mur224461820	ProperStrand	4	4	-inf
chr17	39846583	39846704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	136526739	136526777	SINE	B1_Mm	Alu	chr5B1_Mm136526737	NonProperStrand	2	1	-5.3533
chr14	31106273	31106336	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	187	chr15	100540012	100540064	protein_coding	Galnt6	intron	ENSMUSG00000037280	ProperStrand	18	1	-12.1860
chr19	8724250	8724293	SINE	B1F	Alu	chr19B1F8724255	ProperStrand	9	chr16	35325704	35325739	protein_coding	Sec22a	intron	ENSMUSG00000034473	ProperStrand	38	1	-16.8697
chr5	3646800	3646854	protein_coding	Gatad1	exon	ENSMUSG00000007415	ProperStrand	11	chr13	97190562	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.5318
chr14	66911677	66911725	LINE	L1MB2	L1	chr14L1MB266911435	ProperStrand	1	chr14	66913636	66913705	LTR	RLTR15	ERVK	chr14RLTR1566913418	NonProperStrand	2	1	-inf
chr10	7753617	7753706	LINE	L1VL4	L1	chr10L1VL47752550	NonProperStrand	1	chr17	39847530	39847546	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr2	71242280	71242380	protein_coding	Hat1	intron	ENSMUSG00000027018	ProperStrand	14	chrX	101292200	101292290	protein_coding	C77370	intron	ENSMUSG00000046449	NonProperStrand	31	1	-16.3214
chr16	22412882	22412945	protein_coding	Etv5	intron	ENSMUSG00000013089	ProperStrand	260	chr7	16564328	16564420	protein_coding	Gltscr1	intron	ENSMUSG00000070808	ProperStrand	25	1	-10.8538
chr5	66135269	66135359	LTR	MT2B	ERVL	chr5MT2B66135164	NonProperStrand	1	chr5	66134910	66135010	SINE	B2_Mm2	B2	chr5B2_Mm266134804	ProperStrand	1	1	-inf
chr4	116335658	116335713	SINE	RSINE1	B4	chr4RSINE1116335554	NonProperStrand	1	chr9	100787614	100787710	protein_coding	Stag1	intron	ENSMUSG00000037286	ProperStrand	83	1	-inf
chr4	134926610	134926655	protein_coding	A330049M08Rik	intron	ENSMUSG00000043924	NonProperStrand	31	chr7	133051046	133051100	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-6.4830
chr15	51787951	51788019	LTR	MTC	MaLR	chr15MTC51787786	ProperStrand	4	chr11	68028301	68028384	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	239	1	-14.9304
chr16	35981615	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	174	chr7	123359121	123359225	protein_coding	Plekha7	intron	ENSMUSG00000045659	ProperStrand	186	1	-7.6265
chr17	39848200	39848263	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	chr6	83189653	83189724	protein_coding	Slc4a5	intron	ENSMUSG00000068323	ProperStrand	48	2	-3.3949
chr2	23156618	23156702	LINE	L1Md_F3	L1	chr2L1Md_F323151457	ProperStrand	2	chr11	53300334	53300383	Other	RMER1A	Other	chr11RMER1A53299639	ProperStrand	43	1	-20.6040
chr19	38403361	38403414	SINE	PB1D10	Alu	chr19PB1D1038403330	ProperStrand	1	chr7	125710237	125710295	protein_coding	Tmc7	intron	ENSMUSG00000042246	NonProperStrand	30	1	-inf
chr17	4082172	4082196	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chr17	30269317	30269351	protein_coding	Zfand3	intron	ENSMUSG00000044477	NonProperStrand	157	1	-5.7603
chr8	33929135	33929201	DNA	MER5A	MER1_type	chr8MER5A33929108	ProperStrand	1	chr9	123461820	123461867	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr11	101525682	101525731	SINE	PB1D7	Alu	chr11PB1D7101525670	NonProperStrand	1	chr18	35567361	35567428	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	1	-inf
chr18	21416928	21417028	protein_coding	Fam59a	intron	ENSMUSG00000042680	ProperStrand	30	chr17	30388286	30388376	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	658	1	-8.6309
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	181	chr16	84846273	84846305	protein_coding	Gabpa	intron	ENSMUSG00000008976	ProperStrand	42	1	-10.5264
chr2	25562012	25562048	antisense	A230005M16Rik	.	ENSMUSG00000087612	NonProperStrand	3	chr2	25557951	25558010	protein_coding	Lcn13	intron	ENSMUSG00000062061	ProperStrand	2	1	-20.2824
chr17	39847207	39847236	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr6	56833007	56833115	protein_coding	Nt5c3	intron	ENSMUSG00000029780	ProperStrand	2	1	-6.5615
chr4	106579030	106579120	SINE	B2_Mm2	B2	chr4B2_Mm2106578932	NonProperStrand	3	chr4	106579136	106579236	SINE	ID_B1	B4	chr4ID_B1106579147	NonProperStrand	3	3	-inf
chr17	39846512	39846556	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	12739326	12739342	LTR	RMER19B	ERVK	chr17RMER19B12738879	NonProperStrand	2	1	-5.3533
chr10	19881716	19881758	protein_coding	Mtap7	intron	ENSMUSG00000019996	NonProperStrand	44	chr9	123462058	123462176	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	3	-4.9334
chr11	30117943	30117974	protein_coding-noncoding	Spnb2	utr3	ENSMUSG00000020315	ProperStrand	4	chr11	30103277	30103335	protein_coding	Spnb2	intron	ENSMUSG00000020315	ProperStrand	88	1	-16.9753
chr9	123462079	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr12	55795670	55795725	protein_coding	Eapp	intron	ENSMUSG00000054302	ProperStrand	3	1	-7.0114
chr8	68149821	68149921	protein_coding	March1	intron	ENSMUSG00000036469	NonProperStrand	24	chr8	68314697	68314787	protein_coding	March1	intron	ENSMUSG00000036469	ProperStrand	80	1	-13.3020
chr15	97714577	97714593	protein_coding	Vdr	intron	ENSMUSG00000022479	ProperStrand	5	chr18	77778802	77778888	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	181	1	-14.9800
chr6	3201482	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	61829435	61830590	protein_coding	Specc1	intron	ENSMUSG00000042331	ProperStrand	27	1	-4.3779
chr11	95452330	95452402	LTR	ORR1D1	MaLR	chr11ORR1D195452165	ProperStrand	1	chr11	95448816	95448879	protein_coding	Ngfr	utr5	ENSMUSG00000000120	NonProperStrand	8	1	-inf
chr5	115490273	115490351	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	251	chr2	33466040	33466126	protein_coding	Lmx1b	intron	ENSMUSG00000038765	ProperStrand	38	1	-10.0748
chr5	120553145	120553245	LTR	MLT1B	MaLR	chr5MLT1B120553109	ProperStrand	6	chr5	120553291	120553381	SINE	MIRc	MIR	chr5MIRc120553302	ProperStrand	6	6	-inf
chr17	39847709	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr7	28373074	28373102	SINE	B1F1	Alu	chr7B1F128373060	NonProperStrand	2	2	-inf
chr3	97708523	97708583	protein_coding	Sec22b	intron	ENSMUSG00000027879	NonProperStrand	3	chr4	107066022	107066092	protein_coding	Tmem48	intron	ENSMUSG00000028614	NonProperStrand	28	1	-19.7481
chr19	29054104	29054194	LTR	RLTR31_Mm	ERVK	chr19RLTR31_Mm29053853	NonProperStrand	1	chr19	32111197	32111297	protein_coding	Asah2	intron	ENSMUSG00000024887	NonProperStrand	6	1	-inf
chr5	107212518	107212535	LTR	RMER10B	ERVL	chr5RMER10B107212367	ProperStrand	53	chr13	97190563	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.3638
chr3	43174687	43174787	LINE	L1Md_T	L1	chr3L1Md_T43174633	NonProperStrand	1	chr3	43175059	43175149	LINE	L1Md_T	L1	chr3L1Md_T43174897	NonProperStrand	2	1	-inf
chr11	65052966	65053092	protein_coding	Myocd	intron	ENSMUSG00000020542	ProperStrand	122	chr17	50920583	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	53	1	-10.8469
chr15	20761678	20761768	LINE	Lx	L1	chr15Lx20761402	NonProperStrand	1	chr15	20761808	20761908	LTR	ORR1D2	MaLR	chr15ORR1D220761802	NonProperStrand	1	1	-inf
chr4	86241580	86241680	protein_coding	Haus6	intron	ENSMUSG00000038047	NonProperStrand	4	chr6	142748510	142748600	protein_coding	Gm766	intron	ENSMUSG00000048473	NonProperStrand	4	1	-inf
chr7	143267168	143267192	LINE	Lx7	L1	chr7Lx7143267165	NonProperStrand	4	chr7	143270612	143270704	SINE	B4A	B4	chr7B4A143270517	NonProperStrand	1	1	-inf
chr15	43261110	43261157	LINE	L1_Mus1	L1	chr15L1_Mus143260636	NonProperStrand	4	chr17	39846818	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-3.6552
chr17	39847181	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr4	147458444	147458498	protein_coding	Agtrap	intron	ENSMUSG00000029007	NonProperStrand	1	1	-inf
chr10	76050255	76050324	protein_coding	Ftcd	intron	ENSMUSG00000001155	ProperStrand	14	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	26	1	-16.6724
chr17	39847901	39847924	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr13	113296014	113296115	protein_coding	Il6st	utr3	ENSMUSG00000021756	ProperStrand	5	1	-3.2379
chr17	39843936	39844012	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr15	91752817	91752833	protein_coding	Muc19	intron	ENSMUSG00000044021	ProperStrand	3	1	-10.2371
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	3660949	3661004	SINE	ID4	ID	chr7ID43660947	NonProperStrand	1	1	-inf
chr12	86664039	86664057	protein_coding	Nek9	intron	ENSMUSG00000034290	ProperStrand	1	chr1	131477282	131477396	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	249	1	-inf
chr9	123462119	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	124830616	124830732	protein_coding	Zfpm1	intron	ENSMUSG00000049577	ProperStrand	4	1	-6.3300
chr9	123461997	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr8	86669419	86669495	protein_coding	Cc2d1a	intron	ENSMUSG00000036686	NonProperStrand	7	1	-5.1121
chr9	123462091	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr13	32820309	32820325	protein_coding	Mylk4	intron	ENSMUSG00000044951	NonProperStrand	20	1	-3.0591
chr17	39846759	39846826	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr18	32067325	32067402	protein_coding	Wdr33	utr3	ENSMUSG00000024400	NonProperStrand	2	1	-5.3533
chr9	17834620	17834710	LINE	L1_Mus1	L1	chr9L1_Mus117834152	NonProperStrand	1	chr16	24875429	24875529	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	255	1	-inf
chr4	111728156	111728221	LINE	L1_Mus4	L1	chr4L1_Mus4111727905	ProperStrand	1	chr10	30399159	30399232	protein_coding	Ncoa7	intron	ENSMUSG00000039697	ProperStrand	4	1	-inf
chr15	77303633	77303678	LTR	RLTR6-int	ERV1	chr15RLTR6-int77303517	NonProperStrand	2	chr11	120346378	120346413	protein_coding-noncoding	Mrpl12	utr5	ENSMUSG00000039640	NonProperStrand	20	1	-20.4416
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	122	chr5	135187189	135187312	protein_coding	Eln	intron	ENSMUSG00000029675	NonProperStrand	64	1	-10.4673
chr5	146261265	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	chr7	96457794	96457890	protein_coding	Tmem135	intron	ENSMUSG00000039428	NonProperStrand	285	1	-4.8173
chr16	13949221	13949322	protein_coding	Mpv17l	utr3	ENSMUSG00000022679	NonProperStrand	3	chr11	99006512	99006794	protein_coding	Ccr7	exon	ENSMUSG00000037944	ProperStrand	29	3	-inf
chr17	39847183	39847217	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr5	117357349	117357417	LTR	MTA_Mm-int	MaLR	chr5MTA_Mm-int117357171	ProperStrand	8	1	-3.3803
chr1	135506975	135507045	lincRNA	Gm17713	intron	ENSMUSG00000092104	NonProperStrand	21	chr1	135527510	135527542	protein_coding	Zc3h11a	intron	ENSMUSG00000026464	ProperStrand	33	1	-15.3689
chr9	47797543	47799470	LINE	L1Md_A	L1	chr9L1Md_A47798059	NonProperStrand	3	chr9	47797444	47797534	LINE	Lx8	L1	chr9Lx847797390	NonProperStrand	3	3	-inf
chr17	39846032	39846108	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr6	51464172	51464474	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n51464369	NonProperStrand	5	1	-6.7797
chr7	130615539	130615618	LINE	Lx7	L1	chr7Lx7130615176	ProperStrand	1	chr7	130616657	130616715	LTR	ORR1A4	MaLR	chr7ORR1A4130616381	ProperStrand	2	1	-inf
chr11	43585933	43586005	LINE	Lx8	L1	chr11Lx843585755	NonProperStrand	1	chr17	39847271	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr8	104419820	104419909	LINE	L1Md_F2	L1	chr8L1Md_F2104419334	ProperStrand	7	chr8	104420609	104420641	LTR	RLTR10E	ERVK	chr8RLTR10E104420534	NonProperStrand	1	1	-inf
chr11	79243216	79243335	protein_coding-noncoding	Nf1	utr5	ENSMUSG00000020716	NonProperStrand	15	chr9	123462092	123462129	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-3.5950
chr14	118665926	118666027	LINE	Lx9	L1	chr14Lx9118665622	NonProperStrand	1	chr14	118658055	118658112	lincRNA	Gm4675	intron	ENSMUSG00000090534	NonProperStrand	19	1	-inf
chr17	26608653	26624605	LTR	MTC	MaLR	chr17MTC26614367	ProperStrand	1	chr5	146261266	146261319	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	477	1	-inf
chr15	9149097	9149459	LTR	RLTR45	ERVK	chr15RLTR459148795	NonProperStrand	2	chr15	9151564	9156222	LTR	RLTR45	ERVK	chr15RLTR459155808	NonProperStrand	2	2	-inf
chr18	79829182	79829282	LINE	Lx2B	L1	chr18Lx2B79829043	NonProperStrand	1	chr18	79828734	79828824	LINE	Lx9	L1	chr18Lx979828677	ProperStrand	1	1	-inf
chr5	76272134	76272179	LTR	MTC	MaLR	chr5MTC76271821	NonProperStrand	1	chr6	3201474	3201541	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	1	-inf
chr6	37965638	37965728	protein_coding-noncoding	Svopl	utr3	ENSMUSG00000029830	NonProperStrand	8	chr5	106964424	106965031	protein_coding	Zfp644	intron	ENSMUSG00000049606	NonProperStrand	39	4	-inf
chr4	123407860	123407950	SINE	B2_Mm2	B2	chr4B2_Mm2123407867	NonProperStrand	2	chr4	123407756	123407856	SINE	PB1D7	Alu	chr4PB1D7123407718	ProperStrand	2	2	-inf
chr1	87889884	87889984	LTR	MER34	ERV1	chr1MER3487889892	NonProperStrand	1	chr1	87889675	87889765	SINE	B1_Mus2	Alu	chr1B1_Mus287889602	NonProperStrand	1	1	-inf
chr14	78810118	78810144	LINE	Lx	L1	chr14Lx78809867	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	924	1	-inf
chr17	39847179	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr8	107588325	107588419	LTR	RMER16-int	ERVK	chr8RMER16-int107586231	NonProperStrand	5	1	-4.3348
chr12	28795022	28795055	LINE	L1_Mur2	L1	chr12L1_Mur228792492	NonProperStrand	2	chr6	66923922	66924048	protein_coding	Gng12	intron	ENSMUSG00000036402	ProperStrand	67	1	-19.1379
chr11	109011791	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr2	179945206	179945253	protein_coding	Lama5	intron	ENSMUSG00000015647	ProperStrand	62	1	-6.0350
chr5	146261176	146261216	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr11	54535667	54535777	protein_coding	Cdc42se2	intron	ENSMUSG00000052298	NonProperStrand	21	1	-7.1436
chr2	10292079	10292169	lincRNA	Gm13261	intron	ENSMUSG00000086748	NonProperStrand	2	chr2	10292389	10292489	protein_coding	Sfmbt2	intron	ENSMUSG00000061186	ProperStrand	95	1	-18.6969
chr7	80202331	80202376	LINE	L1_Mus1	L1	chr7L1_Mus180202201	ProperStrand	4	chr7	80201614	80201707	SINE	B3	B2	chr7B380201641	ProperStrand	1	1	-inf
chr1	115318707	115318807	LINE	L1_Mm	L1	chr1L1_Mm115318643	NonProperStrand	1	chr1	115318923	115319013	SINE	ID_B1	B4	chr1ID_B1115318923	NonProperStrand	1	1	-inf
chr8	65963841	65963859	LTR	RLTR23	ERV1	chr8RLTR2365963789	ProperStrand	1	chr10	117058187	117060756	SINE	RSINE1	B4	chr10RSINE1117060616	NonProperStrand	3	1	-inf
chr11	103051857	103051962	protein_coding-noncoding	Fmnl1	utr5	ENSMUSG00000055805	ProperStrand	2	chr11	103051991	103052062	protein_coding	Fmnl1	intron	ENSMUSG00000055805	ProperStrand	33	2	-inf
chr6	3201509	3201568	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	6429	chr11	113565686	113565755	protein_coding	Cpsf4l	intron	ENSMUSG00000018727	ProperStrand	4	1	-8.3508
chr16	83699985	83700075	LINE	L1_Mus1	L1	chr16L1_Mus183699858	NonProperStrand	1	chr16	83700673	83700773	LINE	Lx5	L1	chr16Lx583700651	ProperStrand	1	1	-inf
chr5	146261173	146261200	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr9	119280058	119280095	protein_coding	Xylb	intron	ENSMUSG00000035769	NonProperStrand	58	1	-5.1285
chr3	87873201	87873303	SINE	B1_Mur1	Alu	chr3B1_Mur187873207	ProperStrand	5	chr3	87873342	87873432	protein_coding	Ttc24	utr3	ENSMUSG00000051036	ProperStrand	6	5	-inf
chr3	59265083	59265109	LINE	L1Md_F2	L1	chr3L1Md_F259264691	ProperStrand	1	chr17	39847277	39847327	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-inf
chr11	87981478	87981500	protein_coding	Cuedc1	intron	ENSMUSG00000018378	NonProperStrand	42	chr12	118318282	118318356	protein_coding	Ptprn2	intron	ENSMUSG00000056553	ProperStrand	87	1	-11.9952
chr13	24910425	24910523	protein_coding	Acot13	intron	ENSMUSG00000006717	ProperStrand	4	chr8	125468162	125468203	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-13.7142
chr9	72277500	72277600	SINE	B1_Mus2	Alu	chr9B1_Mus272277432	NonProperStrand	1	chr5	130280093	130280183	protein_coding	Psph	intron	ENSMUSG00000029446	NonProperStrand	21	1	-inf
chr17	70963685	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr2	93997968	93998050	protein_coding	Hsd17b12	utr5	ENSMUSG00000027195	ProperStrand	58	2	-10.1755
chr17	39848274	39848306	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	14981	mmu-miR-5099	0	20	miRNA	mmu-miR-5099	.	mmu-miR-5099	ProperStrand	3	1	-7.3534
chr17	39846718	39846756	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	126488849	126488949	SINE	B4A	B4	chr7B4A126488751	ProperStrand	2	1	-5.3533
chr19	46646526	46646579	protein_coding	Arl3	intron	ENSMUSG00000025035	NonProperStrand	47	chr1	52179429	52179511	protein_coding	Stat1	utr5	ENSMUSG00000026104	NonProperStrand	47	1	-13.0086
chr14	30847232	30847332	protein_coding	Chdh	intron	ENSMUSG00000015970	ProperStrand	75	chr8	126944842	126944932	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	114	2	-16.2168
chr1	131129551	131129651	LINE	L1_Mur1	L1	chr1L1_Mur1131129572	ProperStrand	1	chr1	131129662	131129752	LTR	MT2_Mm	ERVL	chr1MT2_Mm131129675	ProperStrand	6	1	-inf
chr7	36699001	36699101	LINE	L1MD1	L1	chr7L1MD136698872	ProperStrand	1	chr7	36699199	36699289	LINE	Lx8	L1	chr7Lx836699153	ProperStrand	1	1	-inf
chr6	28848519	28848631	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	942	chr6	128263428	128263465	pseudogene	Rpl18-ps2	.	ENSMUSG00000053173	NonProperStrand	1	1	-inf
chr17	46244597	46244697	LINE	L1ME3A	L1	chr17L1ME3A46244593	NonProperStrand	2	chr17	46244775	46244865	SINE	B1_Mus1	Alu	chr17B1_Mus146244707	NonProperStrand	4	2	-inf
chr17	39847545	39847600	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr14	21626865	21626883	SINE	B1_Mur3	Alu	chr14B1_Mur321626842	NonProperStrand	1	1	-inf
chr10	39648793	39648893	LINE	L1_Mus3	L1	chr10L1_Mus339648820	NonProperStrand	9	chr10	39648656	39648746	SINE	B1_Mm	Alu	chr10B1_Mm39648681	NonProperStrand	7	3	-20.8997
chr15	73125525	73125552	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	598	chr16	24984418	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-5.3897
chr12	81513250	81513285	protein_coding	Dcaf5	intron	ENSMUSG00000049106	ProperStrand	69	chr2	121749236	121749341	protein_coding	Casc4	intron	ENSMUSG00000060227	NonProperStrand	78	2	-17.5794
chr12	116552976	116553074	LINE	L1Md_F2	L1	chr12L1Md_F2116552213	NonProperStrand	1	chr12	116553511	116553601	LINE	L1Md_F2	L1	chr12L1Md_F2116553259	NonProperStrand	1	1	-inf
chr14	62973971	62974082	protein_coding-noncoding	Rnaseh2b	utr5	ENSMUSG00000021932	ProperStrand	12	chr14	62974075	62974206	protein_coding	Rnaseh2b	intron	ENSMUSG00000021932	ProperStrand	49	7	-inf
chr17	39847026	39847134	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	95768125	95768144	protein_coding	Cyp2j12	intron	ENSMUSG00000081225	ProperStrand	2	1	-5.3533
chr4	117172297	117172345	lincRNA	Gm12827	intron	ENSMUSG00000087228	NonProperStrand	2	chr13	44869928	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-11.8693
chr16	36064701	36064739	protein_coding	Fam162a	intron	ENSMUSG00000003955	ProperStrand	95	chr11	88575864	88575912	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-5.3621
chr10	123515077	123515177	DNA	Tigger7	MER2_type	chr10Tigger7123514913	NonProperStrand	1	chr10	123515271	123515361	LINE	Lx2	L1	chr10Lx2123515278	NonProperStrand	1	1	-inf
chrX	48135300	48135398	LINE	L1ME1	L1	chrXL1ME148135045	ProperStrand	1	chr4	95773376	95773408	protein_coding	Cyp2j12	intron	ENSMUSG00000081225	NonProperStrand	12	1	-inf
chr16	91818544	91818562	protein_coding	Atp5o	intron	ENSMUSG00000022956	ProperStrand	18	chr19	10627808	10627848	protein_coding	Tmem216	intron	ENSMUSG00000024667	NonProperStrand	60	1	-14.4717
chr15	4636380	4636480	LINE	L1_Mus1	L1	chr15L1_Mus14636029	NonProperStrand	3	chr15	4635932	4636022	LTR	IAPEY2_LTR	ERVK	chr15IAPEY2_LTR4635834	ProperStrand	1	1	-inf
chr11	62228015	62228079	protein_coding	Ncor1	intron	ENSMUSG00000018501	NonProperStrand	20	chr14	11972605	11972679	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	48	1	-14.7027
chr16	78524354	78524454	LTR	ORR1A4-int	MaLR	chr16ORR1A4-int78523939	NonProperStrand	1	chr16	78524718	78524808	LTR	RLTR11A	ERVK	chr16RLTR11A78524586	ProperStrand	1	1	-inf
chr19	8718427	8718527	SINE	B1_Mus1	Alu	chr19B1_Mus18718410	NonProperStrand	3	chr19	8718607	8718697	SINE	B2_Mm2	B2	chr19B2_Mm28718569	NonProperStrand	3	3	-inf
chr5	18242630	18242730	LINE	L1Md_A	L1	chr5L1Md_A18240701	ProperStrand	1	chr5	17961404	17961494	LTR	RLTR31_Mur	ERVK	chr5RLTR31_Mur17960958	NonProperStrand	1	1	-inf
chr17	39847026	39847123	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr11	60468456	60468498	pseudogene	Gm12619	.	ENSMUSG00000084335	NonProperStrand	5	1	-3.1907
chr11	109011809	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr11	83271641	83271700	protein_coding	Mmp28	intron	ENSMUSG00000020682	NonProperStrand	10	1	-9.7335
chr17	39846453	39846522	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr2	38239276	38239342	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n38239253	NonProperStrand	1	1	-inf
chr2	133981159	133981180	LINE	L1_Mur3	L1	chr2L1_Mur3133980743	NonProperStrand	4	chr13	97190570	97190601	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr3	134619835	134619925	LINE	L1_Mus4	L1	chr3L1_Mus4134619703	NonProperStrand	1	chr15	68190336	68190436	lincRNA	Mir30d	exon	ENSMUSG00000093387	ProperStrand	16	1	-inf
chr1	171285002	171285281	LINE	L1MB8	L1	chr1L1MB8171284746	NonProperStrand	2	chr17	39846594	39846658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr2	144270378	144270430	LINE	Lx8	L1	chr2Lx8144270119	NonProperStrand	13	chr2	144261972	144270380	SINE	B3	B2	chr2B3144261950	NonProperStrand	5	1	-inf
chr15	34441345	34443045	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	36	chr9	123461905	123462181	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	2	-3.7021
chr9	73931632	73931649	LINE	L1Md_F2	L1	chr9L1Md_F273930800	ProperStrand	20	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	327	1	-10.8512
chr17	39846793	39846848	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	57504345	57504428	SINE	B1_Mus1	Alu	chr9B1_Mus157504322	NonProperStrand	1	1	-inf
chr2	53088511	53088537	LTR	MTA_Mm-int	MaLR	chr2MTA_Mm-int53088363	NonProperStrand	1	chr15	80649663	80649679	protein_coding	Tnrc6b	intron	ENSMUSG00000047888	ProperStrand	52	1	-inf
chr8	17370849	17370949	protein_coding-noncoding	Csmd1	utr3	ENSMUSG00000060924	ProperStrand	1	chr8	17371060	17371150	protein_coding	Csmd1	intron	ENSMUSG00000060924	ProperStrand	35	1	-inf
chr17	39847277	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr10	127190647	127190765	SINE	B3A	B2	chr10B3A127190594	ProperStrand	1	1	-inf
chr2	168756769	168765118	protein_coding	Zfp64	intron	ENSMUSG00000027551	ProperStrand	101	chr13	97190561	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-4.1252
chr5	114851974	114852015	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr19	22851988	22852015	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	36	1	-10.3329
chr15	77233570	77233638	LTR	RMER5	ERV1	chr15RMER577233516	NonProperStrand	1	chr11	70009692	70009779	SINE	ID_B1	B4	chr11ID_B170009580	ProperStrand	2	1	-inf
chr12	67663918	67663935	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	80	chr9	65576050	65576097	protein_coding	Zfp609	intron	ENSMUSG00000040524	ProperStrand	12	1	-14.7342
chr3	153912159	153912204	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	290	chr2	71856607	71856623	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	139	1	-7.1920
chr8	85835922	85835953	LTR	ORR1D1	MaLR	chr8ORR1D185835736	NonProperStrand	1	chr5	118120547	118120618	protein_coding	Ksr2	intron	ENSMUSG00000061578	NonProperStrand	228	1	-inf
chr11	101540542	101540632	SINE	ID_B1	B4	chr11ID_B1101540506	NonProperStrand	1	chr11	101540370	101540470	SINE	PB1D7	Alu	chr11PB1D7101540379	NonProperStrand	1	1	-inf
chr10	81388100	81388177	LTR	ORR1A2-int	MaLR	chr10ORR1A2-int81387913	NonProperStrand	3	chr17	39846664	39846722	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-4.3017
chr15	99789786	99789816	protein_coding	1700030F18Rik	intron	ENSMUSG00000045350	ProperStrand	53	chr10	63004770	63006709	protein_coding	Ctnna3	intron	ENSMUSG00000060843	ProperStrand	187	1	-9.9921
chr17	4082420	4082485	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	532	chrX	42147526	42147601	LTR	MLT1B	MaLR	chrXMLT1B42147499	ProperStrand	1	1	-inf
chr2	131138576	131138625	protein_coding-noncoding	Rnf24	utr3	ENSMUSG00000048911	ProperStrand	1	chr2	131139405	131139493	protein_coding	Rnf24	intron	ENSMUSG00000048911	ProperStrand	37	1	-inf
chr1	131132464	131132498	SINE	B3A	B2	chr1B3A131132407	ProperStrand	1	chr15	99303111	99303182	protein_coding	Bcdin3d	intron	ENSMUSG00000037525	NonProperStrand	16	1	-inf
chr14	98626457	98626476	LINE	L1Md_T	L1	chr14L1Md_T98625862	NonProperStrand	1	chr4	116097243	116097272	protein_coding	Mast2	intron	ENSMUSG00000003810	ProperStrand	73	1	-inf
chr11	100709109	100709153	protein_coding	Stat5b	intron	ENSMUSG00000020919	ProperStrand	21	chr5	135382234	135382310	protein_coding	Wbscr28	intron	ENSMUSG00000040576	ProperStrand	9	1	-18.0792
chr13	55295553	55295671	LTR	RMER15-int	ERVL	chr13RMER15-int55295368	ProperStrand	1	chr17	66119070	66119089	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	71	1	-inf
chr17	39845465	39845528	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	24912677	24912745	protein_coding	Zfp112	utr3	ENSMUSG00000052675	ProperStrand	29	1	-3.5309
chr11	5423874	5423974	protein_coding-noncoding	Xbp1	utr5	ENSMUSG00000020484	NonProperStrand	2	chr11	5423328	5423418	protein_coding	Xbp1	utr5	ENSMUSG00000020484	NonProperStrand	6	2	-inf
chr7	133661885	133662119	Other	RMER1B	Other	chr7RMER1B133661841	ProperStrand	1	chr17	39843506	39843531	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr4	121414741	121414761	LINE	L1Md_A	L1	chr4L1Md_A121414692	ProperStrand	1	chr17	15481514	15481608	LTR	ORR1B1	MaLR	chr17ORR1B115481380	NonProperStrand	1	1	-inf
chr19	5797373	5797473	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	2777	chr9	47576336	47576426	protein_coding	Cadm1	intron	ENSMUSG00000032076	ProperStrand	210	2	-3.9017
chr2	167063509	167063556	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	81	chr16	94402373	94402425	protein_coding	Hlcs	intron	ENSMUSG00000040820	NonProperStrand	74	1	-10.9970
chr9	48238714	48238814	LINE	Lx5	L1	chr9Lx548238341	ProperStrand	1	chr9	48238867	48238957	SINE	B1_Mus2	Alu	chr9B1_Mus248238821	NonProperStrand	1	1	-inf
chr17	39846759	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr1	118908471	118908571	LTR	ORR1D1	MaLR	chr1ORR1D1118908416	ProperStrand	1	1	-inf
chr1	7497872	7497962	LINE	L1_Mm	L1	chr1L1_Mm7497785	NonProperStrand	1	chr1	45269246	45269346	LINE	Lx4B	L1	chr1Lx4B45267982	ProperStrand	1	1	-inf
chr15	83116949	83117616	LTR	RMER4B	ERVK	chr15RMER4B83117348	NonProperStrand	12	chr15	83116841	83116941	SINE	B3	B2	chr15B383116805	ProperStrand	6	6	-inf
chr14	118621775	118621852	LINE	L2a	L2	chr14L2a118621712	ProperStrand	1	chr2	115734334	115734378	protein_coding	Meis2	intron	ENSMUSG00000027210	NonProperStrand	155	1	-inf
chr4	143242537	143242558	LINE	L1Md_F2	L1	chr4L1Md_F2143242119	ProperStrand	1	chr9	123461882	123461903	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr10	40258603	40258680	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	1721	chr14	19913789	19913871	Simple_repeat	(CA)n	Simple_repeat	chr14(CA)n19913811	NonProperStrand	1	1	-inf
chr9	108209402	108209433	protein_coding	Rhoa	intron	ENSMUSG00000007815	NonProperStrand	27	chr15	84762891	84762912	protein_coding	Nup50	intron	ENSMUSG00000016619	ProperStrand	22	1	-15.6843
chr16	44733583	44733722	protein_coding-noncoding	BC027231	utr5	ENSMUSG00000036208	ProperStrand	1	chr16	24984417	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-inf
chr2	160746728	160746760	SINE	B3	B2	chr2B3160746673	ProperStrand	1	chr2	160735869	160735956	protein_coding	Emilin3	intron	ENSMUSG00000050700	NonProperStrand	19	1	-inf
chr4	127125971	127126061	LINE	L1MD2	L1	chr4L1MD2127125695	ProperStrand	1	chr4	127126132	127126232	SINE	B1_Mus1	Alu	chr4B1_Mus1127126145	NonProperStrand	1	1	-inf
chr13	21718015	21718114	LINE	Lx7	L1	chr13Lx721717482	ProperStrand	15	chr17	39847215	39847301	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	4	-8.7134
chr18	84884694	84884785	LINE	L1Md_T	L1	chr18L1Md_T84883512	NonProperStrand	1	chr18	84889113	84889146	lincRNA	D030046N08Rik	exon	ENSMUSG00000089760	NonProperStrand	1	1	-inf
chr6	112430990	112431090	protein_coding	Oxtr	intron	ENSMUSG00000049112	NonProperStrand	1	chr6	111190006	111190096	protein_coding	Grm7	intron	ENSMUSG00000056755	NonProperStrand	13	1	-inf
chr6	83939551	83939608	LTR	MTA_Mm	MaLR	chr6MTA_Mm83939203	ProperStrand	1	chr6	127107934	127108017	lincRNA	9330179D12Rik	intron	ENSMUSG00000084922	NonProperStrand	19	1	-inf
chr2	59218924	59218989	LINE	L1MA6	L1	chr2L1MA659218136	ProperStrand	5	chr2	59263704	59263747	LINE	L1MB4	L1	chr2L1MB459263607	NonProperStrand	1	1	-inf
chr1	87667974	87668006	protein_coding	A630001G21Rik	intron	ENSMUSG00000052760	ProperStrand	4	chr7	131402582	131402651	sense_intronic	Gm15338	.	ENSMUSG00000085899	NonProperStrand	35	1	-18.9655
chr14	69693695	69693735	LINE	L1MC3	L1	chr14L1MC369693573	ProperStrand	1	chr17	39848598	39848713	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	13033	1	-inf
chr17	39843969	39844018	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	3530	chr6	58842779	58842844	protein_coding	Herc3	intron	ENSMUSG00000029804	ProperStrand	21	1	-6.0300
chr11	78400788	78400806	protein_coding	Nlk	intron	ENSMUSG00000017376	NonProperStrand	32	chr13	44869574	44869715	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	7	-19.3742
chr9	55223568	55223602	protein_coding	AI118078	intron	ENSMUSG00000032313	ProperStrand	76	chr13	45717436	45717460	protein_coding	Atxn1	intron	ENSMUSG00000046876	ProperStrand	103	1	-10.4612
chr4	3834478	3834587	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	60	chr1	16121776	16121802	protein_coding	Rdh10	utr3	ENSMUSG00000025921	ProperStrand	15	1	-14.8507
chr19	23142887	23142951	lincRNA	C330002G04Rik	intron	ENSMUSG00000087169	NonProperStrand	149	chr1	136364891	136364953	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	136	1	-8.5581
chr17	39843864	39843937	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr1	163896922	163896986	protein_coding	4930558K02Rik	intron	ENSMUSG00000086277	NonProperStrand	7	1	-7.2053
chr7	5409529	5409663	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	12	chr14	33967645	33967790	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	76	2	-inf
chr17	53620271	53620371	protein_coding	Rab5a	intron	ENSMUSG00000017831	ProperStrand	19	chr16	36085860	36085950	protein_coding	Ccdc58	intron	ENSMUSG00000075229	ProperStrand	93	3	-21.4061
chr4	6240814	6240914	LINE	L1Md_F2	L1	chr4L1Md_F26235891	NonProperStrand	1	chr4	6241279	6241369	LINE	L1Md_F2	L1	chr4L1Md_F26241078	NonProperStrand	1	1	-inf
chr17	85028016	85028110	protein_coding	Dync2li1	intron	ENSMUSG00000024253	ProperStrand	3	chr1	71640309	71640336	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	133	1	-16.8395
chr12	110496917	110497011	LINE	L1_Mur3	L1	chr12L1_Mur3110496422	ProperStrand	3	chr7	133063542	133063598	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	1884	1	-11.4919
chr2	22938503	22938578	protein_coding	Acbd5	intron	ENSMUSG00000026781	ProperStrand	6	chr2	34419590	34419646	protein_coding	Mapkap1	intron	ENSMUSG00000038696	ProperStrand	60	1	-16.8673
chr7	78842829	78842929	LINE	L1MCa	L1	chr7L1MCa78842800	NonProperStrand	1	chr7	78842989	78843079	LINE	L1MCa	L1	chr7L1MCa78842986	NonProperStrand	1	1	-inf
chr9	55848552	55848642	LTR	MTD-int	MaLR	chr9MTD-int55848470	NonProperStrand	1	chr9	55848384	55848484	LTR	MTD	MaLR	chr9MTD55848104	NonProperStrand	1	1	-inf
chr5	67822165	67822238	lincRNA	Gm16714	intron	ENSMUSG00000085339	NonProperStrand	9	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	169	1	-13.8339
chr8	86857005	86857103	LTR	ORR1B2	MaLR	chr8ORR1B286856979	ProperStrand	1	chr4	48211695	48218111	protein_coding	Erp44	intron	ENSMUSG00000028343	ProperStrand	37	1	-inf
chr1	122357169	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	284	chr17	39843484	39843657	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	5	-3.7855
chr17	85149105	85149170	protein_coding	Lrpprc	intron	ENSMUSG00000024120	NonProperStrand	54	chr3	98026902	98026966	protein_coding	Reg4	intron	ENSMUSG00000027876	ProperStrand	14	1	-15.1952
chr10	4388020	4388124	LINE	L1Md_F2	L1	chr10L1Md_F24382964	ProperStrand	9	chr13	14054337	14054355	protein_coding	B3galnt2	intron	ENSMUSG00000039242	ProperStrand	34	1	-17.0674
chr7	136982932	136983004	LINE	L1_Mm	L1	chr7L1_Mm136981438	NonProperStrand	4	chr17	39847636	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-3.7035
chr8	77922258	77922358	LINE	L1_Mus1	L1	chr8L1_Mus177922086	NonProperStrand	1	chr8	77922584	77922674	pseudogene	Gm7984	.	ENSMUSG00000049891	NonProperStrand	1	1	-inf
chr9	60155983	60156022	protein_coding	Thsd4	intron	ENSMUSG00000032289	ProperStrand	50	chr2	5379333	5379368	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-4.8993
chr18	67806518	67806618	protein_coding	Psmg2	intron	ENSMUSG00000024537	ProperStrand	5	chr11	103725001	103725091	protein_coding	Nsf	intron	ENSMUSG00000034187	ProperStrand	6	1	-inf
chr13	21917159	21917192	LTR	RMER16-int	ERVK	chr13RMER16-int21917142	NonProperStrand	1	chr17	39847611	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr17	39846587	39846649	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	83745387	83745439	LTR	RLTR10-int	ERVK	chr17RLTR10-int83745323	NonProperStrand	1	1	-inf
chr4	94592330	94592411	protein_coding	4930579C15Rik	intron	ENSMUSG00000028575	ProperStrand	21	chr4	120560461	120560498	protein_coding	Rims3	intron	ENSMUSG00000032890	NonProperStrand	44	1	-14.7747
chr8	114908958	114909048	LINE	L1Md_F2	L1	chr8L1Md_F2114908056	NonProperStrand	3	chr8	114909104	114909204	LINE	L1Md_F2	L1	chr8L1Md_F2114908056	ProperStrand	3	2	-20.2273
chr11	69895330	69895405	LTR	ORR1D1	MaLR	chr11ORR1D169895296	ProperStrand	1	chr1	74280117	74280202	SINE	B2_Mm2	B2	chr1B2_Mm274280011	NonProperStrand	14	1	-inf
chr14	78562625	78562693	LINE	L1Md_F	L1	chr14L1Md_F78561905	NonProperStrand	2	chr6	108465593	108465634	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	361	1	-15.8947
chr11	98028354	98028453	protein_coding	Med1	intron	ENSMUSG00000018160	NonProperStrand	117	chr9	45601909	45601946	protein_coding	Cep164	intron	ENSMUSG00000043987	NonProperStrand	25	1	-12.4536
chr17	39847902	39848021	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr2	132509851	132509870	SINE	B2_Mm2	B2	chr2B2_Mm2132509846	NonProperStrand	1	1	-inf
chr14	67677877	67677946	protein_coding	Ppp2r2a	intron	ENSMUSG00000022052	ProperStrand	54	chr13	97190541	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.3273
chr17	39846352	39847189	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr4	56805904	56805920	protein_coding	Ikbkap	intron	ENSMUSG00000028431	ProperStrand	109	12	-3.3002
chr14	76425855	76425922	LTR	RLTR18	ERVK	chr14RLTR1876425610	ProperStrand	1	chr9	123461991	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr13	4249333	4249351	LINE	Lx2B	L1	chr13Lx2B4249270	NonProperStrand	1	chr8	18742950	18743026	protein_coding	Mcph1	intron	ENSMUSG00000039842	ProperStrand	778	1	-inf
chr3	153411439	153411480	LTR	RMER12	ERVK	chr3RMER12153411418	NonProperStrand	1	chr3	107685970	107686079	protein_coding	Eps8l3	intron	ENSMUSG00000040600	NonProperStrand	14	1	-inf
chr2	61768025	61768099	LINE	Lx2A	L1	chr2Lx2A61767480	ProperStrand	2	chr17	39847270	39847293	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr3	49349962	49350062	LINE	Lx4A	L1	chr3Lx4A49349259	NonProperStrand	1	chr3	49350110	49350200	LINE	Lx8	L1	chr3Lx849350051	ProperStrand	1	1	-inf
chr11	120812835	120818692	protein_coding	Slc16a3	intron	ENSMUSG00000025161	NonProperStrand	149	chr9	123461905	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	5	-3.0504
chr17	39846940	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	96160163	96160219	LTR	ORR1B1-int	MaLR	chrXORR1B1-int96159664	NonProperStrand	4	3	-10.7069
chr8	69933417	69933478	LINE	L1Md_A	L1	chr8L1Md_A69932143	ProperStrand	18	chr1	191002674	191002725	Simple_repeat	(CATA)n	Simple_repeat	chr1(CATA)n191002665	NonProperStrand	2	2	-inf
chr15	36682327	36682427	LINE	L1MC4	L1	chr15L1MC436682230	ProperStrand	1	chr15	36682064	36682154	SINE	B4	B4	chr15B436681973	ProperStrand	1	1	-inf
chr11	50266816	50266906	LINE	HAL1	L1	chr11HAL150266822	ProperStrand	2	chr11	50266725	50266825	SINE	B3	B2	chr11B350266622	NonProperStrand	2	2	-inf
chr2	13758140	13758230	LINE	L2a	L2	chr2L2a13758145	NonProperStrand	2	chr2	13758038	13758138	SINE	B2_Mm2	B2	chr2B2_Mm213757953	ProperStrand	2	2	-inf
chr9	13746068	13746149	LINE	L1Md_F3	L1	chr9L1Md_F313742410	ProperStrand	1	chr17	39847342	39847359	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr11	33379107	33379174	protein_coding	Ranbp17	intron	ENSMUSG00000040594	ProperStrand	594	chr17	65838958	65840946	protein_coding	Tmem232	intron	ENSMUSG00000045036	ProperStrand	160	1	-5.5091
chr1	152063588	152063731	LTR	RLTR22_Mur	ERVK	chr1RLTR22_Mur152063574	ProperStrand	2	chr14	46605052	46605069	lincRNA	Gm15218	intron	ENSMUSG00000085866	ProperStrand	10	1	-20.4467
chr10	125884232	125884322	LTR	MTC	MaLR	chr10MTC125884217	NonProperStrand	1	chr10	125883990	125884090	SINE	B4A	B4	chr10B4A125883967	ProperStrand	1	1	-inf
chr7	27162322	27162422	protein_coding-noncoding	Nlrp9c	utr3	ENSMUSG00000040614	ProperStrand	2	chr7	27164547	27164637	protein_coding	Nlrp9c	intron	ENSMUSG00000040614	ProperStrand	47	1	-20.1013
chr6	115619143	115619209	protein_coding	Raf1	intron	ENSMUSG00000000441	ProperStrand	10	chr12	51640218	51640287	protein_coding	Prkd1	intron	ENSMUSG00000002688	ProperStrand	87	1	-14.9423
chr15	42088611	42088701	LINE	L1_Mus3	L1	chr15L1_Mus342088604	ProperStrand	1	chr15	42088306	42088406	LINE	Lx5	L1	chr15Lx542088324	NonProperStrand	1	1	-inf
chr10	108187975	108188071	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	169	chr14	48168907	48168961	protein_coding	Atg14	intron	ENSMUSG00000037526	NonProperStrand	12	1	-13.2291
chr1	154060136	154060154	LTR	MLT1D	MaLR	chr1MLT1D154060082	NonProperStrand	1	chr1	128333639	128334772	protein_coding	Nckap5	intron	ENSMUSG00000049690	ProperStrand	235	1	-inf
chr10	83414121	83414198	LTR	ORR1E	MaLR	chr10ORR1E83413869	NonProperStrand	7	chr3	94581271	94581338	protein_coding	Cgn	intron	ENSMUSG00000068876	ProperStrand	61	1	-16.4256
chr17	39847207	39847350	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	chr18	10151051	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	36	4	-4.5359
chr17	50420126	50420162	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	169	chr11	97819339	97819433	protein_coding	Plxdc1	intron	ENSMUSG00000017417	NonProperStrand	132	1	-8.3666
chr8	48236770	48236786	LINE	L1Md_A	L1	chr8L1Md_A48236270	ProperStrand	1	chr17	39843359	39843468	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	1	-inf
chr17	39846570	39846712	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr8	3610709	3610743	protein_coding	Xab2	intron	ENSMUSG00000019470	NonProperStrand	3	2	-8.0300
chr4	151949772	151949872	LTR	ERVL-E-int	ERVL	chr4ERVL-E-int151949761	NonProperStrand	1	chr4	151949683	151949773	LTR	MTEa	MaLR	chr4MTEa151949369	NonProperStrand	3	1	-inf
chr17	70963742	70963886	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	1112	chr18	34633684	34633700	protein_coding	Fam13b	intron	ENSMUSG00000036501	NonProperStrand	18	1	-8.6254
chr17	39845847	39845903	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr16	20607969	20608015	protein_coding	Alg3	intron	ENSMUSG00000033809	ProperStrand	2	1	-9.0607
chr2	34330364	34330429	protein_coding	Mapkap1	intron	ENSMUSG00000038696	NonProperStrand	47	chr13	97190561	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-5.5990
chr5	109887991	109888086	LINE	L1VL1	L1	chr5L1VL1109887971	ProperStrand	4	chr12	87772471	87772488	protein_coding	Esrrb	intron	ENSMUSG00000021255	NonProperStrand	2	2	-inf
chr14	52343985	52344041	LINE	L1_Mur3	L1	chr14L1_Mur352343662	ProperStrand	1	chr17	39847728	39847764	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr7	11162255	11162355	LINE	Lx3A	L1	chr7Lx3A11161864	NonProperStrand	1	chr9	123461988	123462078	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr16	97944352	97944417	LTR	RLTR10-int	ERVK	chr16RLTR10-int97943767	NonProperStrand	1	chr6	122737244	122737298	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	270	1	-inf
chr8	79089221	79089281	LINE	Lx	L1	chr8Lx79087301	ProperStrand	1	chr10	43101999	43102069	protein_coding	Pdss2	intron	ENSMUSG00000038240	NonProperStrand	17	1	-inf
chr5	114852009	114852049	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	233	chr16	19883804	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	285	1	-6.2077
chr7	63086919	63087008	LINE	L1MC	L1	chr7L1MC63086942	ProperStrand	2	chr7	63087077	63087177	Simple_repeat	(TTGG)n	Simple_repeat	chr7(TTGG)n63087083	ProperStrand	2	2	-inf
chr8	122383938	122386885	Simple_repeat	(TTC)n	Simple_repeat	chr8(TTC)n122383902	ProperStrand	2	chr8	122386878	122397849	protein_coding	Klhl36	intron	ENSMUSG00000031828	ProperStrand	25	1	-inf
chr3	84890947	84891017	protein_coding	Arfip1	intron	ENSMUSG00000074513	NonProperStrand	170	chr11	95679750	95679828	protein_coding	Zfp652	intron	ENSMUSG00000075595	ProperStrand	82	1	-9.3063
chr5	146261173	146261205	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr17	24205631	24205653	protein_coding	Kctd5	intron	ENSMUSG00000016946	ProperStrand	24	1	-6.8742
chr6	4754497	4754554	LINE	L1MB2	L1	chr6L1MB24754431	ProperStrand	6	chr6	39716360	39716418	LINE	Lx8	L1	chr6Lx839715555	NonProperStrand	1	1	-inf
chr17	39846411	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr5	151643734	151644666	SINE	B2_Mm2	B2	chr5B2_Mm2151644599	ProperStrand	2	1	-5.3533
chr17	83359777	83359867	LTR	LTR33	ERVL	chr17LTR3383359802	ProperStrand	3	chr7	3705859	3705959	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	64	3	-inf
chr13	60657137	60657227	LINE	Lx9	L1	chr13Lx960657081	ProperStrand	4	chr13	60657456	60657556	SINE	ID_B1	B4	chr13ID_B160657424	ProperStrand	1	1	-inf
chrX	150984607	150984632	LINE	L1_Mus3	L1	chrXL1_Mus3150983431	ProperStrand	2	chr17	39847659	39847762	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-5.4040
chr5	55481645	55481745	LINE	L1_Mus2	L1	chr5L1_Mus255481049	NonProperStrand	1	chr5	55481765	55481855	LINE	L1_Mus2	L1	chr5L1_Mus255481668	NonProperStrand	1	1	-inf
chr16	37654220	37654285	protein_coding	Ndufb4	intron	ENSMUSG00000022820	ProperStrand	9	chr19	25033129	25033187	protein_coding	Cbwd1	intron	ENSMUSG00000024878	NonProperStrand	3	1	-21.0885
chr1	57696906	57697006	Low_complexity	C-rich	Low_complexity	chr1C-rich57696877	ProperStrand	1	chr1	57696628	57696718	SINE	B3A	B2	chr1B3A57696606	NonProperStrand	1	1	-inf
chr13	112901537	112903431	LTR	LTR16E2	ERVL	chr13LTR16E2112901384	NonProperStrand	3	chr13	112920387	112921643	LTR	MLT1A	MaLR	chr13MLT1A112920378	NonProperStrand	2	2	-inf
chr3	39685889	39685989	LINE	L1MC2	L1	chr3L1MC239685807	ProperStrand	1	chr3	39686154	39686244	LINE	L1MC2	L1	chr3L1MC239686177	ProperStrand	1	1	-inf
chr4	150898190	150898280	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	225	chr12	79432038	79432089	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-4.3416
chr5	146261174	146261230	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr2	158009714	158009741	protein_coding	D630003M21Rik	intron	ENSMUSG00000037813	ProperStrand	13	1	-8.1236
chr3	3036848	3036867	LINE	L1VL4	L1	chr3L1VL43033630	NonProperStrand	2	chr17	39846580	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-5.3533
chr17	39843411	39843478	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr8	49742606	49742624	protein_coding	Odz3	intron	ENSMUSG00000031561	NonProperStrand	9	1	-6.2068
chr4	31682479	31682569	LINE	Lx7	L1	chr4Lx731682458	NonProperStrand	1	chr4	31682078	31682178	LTR	RMER19B	ERVK	chr4RMER19B31681613	NonProperStrand	1	1	-inf
chr1	47036905	47036995	LTR	RLTR14	ERV1	chr1RLTR1447036808	NonProperStrand	1	chr1	47037134	47037234	LTR	RMER19A	ERVK	chr1RMER19A47037132	ProperStrand	1	1	-inf
chr17	39843742	39843824	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	6129	chr5	111320801	111320874	lincRNA	Ttc28	intron	ENSMUSG00000033209	NonProperStrand	11	1	-6.2585
chr6	17700986	17701017	protein_coding	St7	intron	ENSMUSG00000029534	ProperStrand	40	chr5	142458163	142458235	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	306	1	-9.5755
chr17	39846450	39846701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chrX	95861557	95861740	protein_coding	Ophn1	intron	ENSMUSG00000031214	NonProperStrand	6	2	-5.1926
chr8	71882135	71887285	LINE	L1Md_F	L1	chr8L1Md_F71878832	ProperStrand	1	chr4	137508374	137508420	protein_coding	Ece1	intron	ENSMUSG00000057530	ProperStrand	325	1	-inf
chr6	99934264	99934364	DNA	MER58A	MER1_type	chr6MER58A99934211	NonProperStrand	5	chr6	99934381	99934471	Simple_repeat	(TCTCCC)n	Simple_repeat	chr6(TCTCCC)n99934355	NonProperStrand	5	5	-inf
chr17	39846818	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr17	85947167	85947228	Simple_repeat	(GA)n	Simple_repeat	chr17(GA)n85947168	NonProperStrand	1	1	-inf
chr16	72769241	72769332	protein_coding	Robo1	intron	ENSMUSG00000022883	ProperStrand	177	chr2	132745829	132745887	protein_coding	Fermt1	intron	ENSMUSG00000027356	NonProperStrand	15	1	-12.6716
chr15	85177751	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	233	chr3	158160418	158160434	protein_coding	Lrrc7	intron	ENSMUSG00000028176	ProperStrand	64	1	-9.1739
chr13	114455279	114455723	LINE	L1Md_F2	L1	chr13L1Md_F2114455016	NonProperStrand	2	chr8	87481248	87481275	protein_coding	Rnaseh2a	utr3	ENSMUSG00000052926	NonProperStrand	82	1	-18.7772
chr11	109011670	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1175	chr9	40802773	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	595	2	-3.4347
chr6	8773314	8773390	LINE	Lx3A	L1	chr6Lx3A8772903	NonProperStrand	1	chr17	39846428	39846498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr9	123462140	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	chr5	102285442	102285533	protein_coding	Wdfy3	intron	ENSMUSG00000043940	NonProperStrand	5	1	-5.8308
chr6	108691484	108691584	LTR	MTEb	MaLR	chr6MTEb108691489	ProperStrand	1	chr6	108691323	108691413	SINE	B3	B2	chr6B3108691281	NonProperStrand	1	1	-inf
chr17	39846428	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr10	39959640	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	5	1	-3.1907
chr12	110692276	110692323	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	246	chr11	116238064	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	30	1	-10.5936
chr11	6419262	6419526	protein_coding	Myo1g	utr5	ENSMUSG00000020437	NonProperStrand	91	chr5	124472573	124472616	protein_coding	Vps37b	intron	ENSMUSG00000066278	NonProperStrand	26	1	-12.8797
chr17	39845904	39845930	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr5	123157861	123158402	protein_coding	P2rx4	intron	ENSMUSG00000029470	ProperStrand	14	1	-4.6359
chr1	77061623	77061713	LTR	RMER13A	ERVK	chr1RMER13A77061224	NonProperStrand	1	chr1	77061776	77061874	LTR	RMER13B	ERVK	chr1RMER13B77061720	NonProperStrand	1	1	-inf
chr11	110437009	110437103	LINE	Lx8	L1	chr11Lx8110436629	ProperStrand	1	chr17	39847537	39847594	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	1	-inf
chr6	43336250	43336340	protein_coding	Tpk1	intron	ENSMUSG00000029735	NonProperStrand	39	chr8	125539567	125539667	protein_coding	Ankrd11	intron	ENSMUSG00000035569	ProperStrand	439	1	-8.9070
chrX	144390768	144390858	LTR	ORR1E	MaLR	chrXORR1E144390500	NonProperStrand	1	chr5	136405479	136405579	protein_coding	Ywhag	intron	ENSMUSG00000051391	ProperStrand	34	1	-inf
chr6	49236512	49236582	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	230	chr12	79742451	79742511	protein_coding	Gphn	intron	ENSMUSG00000047454	ProperStrand	776	1	-4.3000
chr2	104907581	104907627	Low_complexity	GA-rich	Low_complexity	chr2GA-rich104907584	ProperStrand	1	chr2	104886408	104886464	Simple_repeat	(TCC)n	Simple_repeat	chr2(TCC)n104886304	ProperStrand	1	1	-inf
chrX	87238370	87238401	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	213	chr4	45346525	45346554	protein_coding	Exosc3	intron	ENSMUSG00000028322	ProperStrand	19	1	-11.8137
chr10	31404507	31404597	LINE	L1_Mus3	L1	chr10L1_Mus331404456	NonProperStrand	3	chr10	31404325	31404425	LTR	MLT1D	MaLR	chr10MLT1D31404058	NonProperStrand	3	3	-inf
chr15	3987685	3987776	protein_coding	Oxct1	intron	ENSMUSG00000022186	NonProperStrand	14	chr13	97190573	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-8.0321
chr17	46119408	46119447	DNA	Tigger13a	MER2_type	chr17Tigger13a46119383	ProperStrand	1	chr17	46119835	46119920	SINE	ID4_	ID	chr17ID4_46119835	NonProperStrand	2	1	-inf
chr9	120130175	120130214	LTR	MTD	MaLR	chr9MTD120129944	NonProperStrand	34	chr17	27981865	27981943	protein_coding	Snrpc	intron	ENSMUSG00000024217	ProperStrand	15	1	-15.9951
chr17	27923793	27923853	protein_coding	D17Wsu92e	intron	ENSMUSG00000056692	NonProperStrand	106	chr17	27921882	27921952	pseudogene	Rps2-ps9	.	ENSMUSG00000080731	ProperStrand	2	1	-18.3032
chr18	31583723	31583740	LINE	Lx8	L1	chr18Lx831583708	ProperStrand	1	chr17	39846951	39846978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr2	29180017	29180098	LINE	L1_Rod	L1	chr2L1_Rod29180030	ProperStrand	2	chr11	88503009	88503073	protein_coding	Msi2	intron	ENSMUSG00000069769	ProperStrand	1081	1	-13.7007
chr7	68099148	68099261	LINE	L1Md_A	L1	chr7L1Md_A68096398	ProperStrand	16	chr11	33458943	33458985	protein_coding	Gabrp	intron	ENSMUSG00000020159	ProperStrand	24	1	-16.5806
chr7	107664853	107664925	SINE	B3A	B2	chr7B3A107664821	ProperStrand	1	chr7	107662933	107662970	protein_coding	Dnajb13	intron	ENSMUSG00000030708	NonProperStrand	8	1	-inf
chr17	39846428	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr9	6646962	6646983	SINE	ID_B1	B4	chr9ID_B16646850	ProperStrand	3	1	-4.3017
chr7	46626244	46632734	LINE	Lx6	L1	chr7Lx646625579	ProperStrand	3	chr7	46632737	46633827	LINE	Lx6	L1	chr7Lx646631316	ProperStrand	3	3	-inf
chr2	65931762	65931862	protein_coding-noncoding	Galnt3	utr3	ENSMUSG00000026994	ProperStrand	1	chr2	65932151	65932241	protein_coding	Galnt3	intron	ENSMUSG00000026994	ProperStrand	2	1	-inf
chr17	39846392	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	chr7	125555939	125556029	protein_coding	Syt17	intron	ENSMUSG00000058420	NonProperStrand	5	1	-3.1907
chr17	39843607	39843709	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr4	45359545	45359635	protein_coding	Dcaf10	intron	ENSMUSG00000035572	ProperStrand	11	1	-5.7931
chrX	150987985	150988055	LTR	IAPEY3-int	ERVK	chrXIAPEY3-int150987686	NonProperStrand	1	chr8	125418418	125418458	protein_coding	Ankrd11	exon	ENSMUSG00000035569	ProperStrand	439	1	-inf
chr13	101354232	101354322	LTR	RLTR25A	ERVK	chr13RLTR25A101354205	ProperStrand	1	chr13	101354547	101354647	LTR	RLTR25A	ERVK	chr13RLTR25A101354541	ProperStrand	1	1	-inf
chr2	65998038	65998138	DNA	URR1A	MER1_type	chr2URR1A65997900	NonProperStrand	1	chr2	160796404	160796494	protein_coding	Chd6	intron	ENSMUSG00000057133	ProperStrand	8	1	-inf
chr1	82782297	82782387	SINE	ID_B1	B4	chr1ID_B182782248	NonProperStrand	1	chr1	82782109	82782209	SINE	RSINE1	B4	chr1RSINE182782058	NonProperStrand	1	1	-inf
chr10	60298508	60298598	SINE	B4A	B4	chr10B4A60298356	ProperStrand	4	chr10	60298627	60298727	SINE	RSINE1	B4	chr10RSINE160298631	ProperStrand	5	4	-inf
chr2	33359778	33359878	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n33359757	NonProperStrand	2	chr2	33359906	33359996	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n33359910	NonProperStrand	2	2	-inf
chr7	5903684	5903784	LINE	L1_Mur3	L1	chr7L1_Mur35903666	NonProperStrand	1	chr7	5903923	5904013	SINE	B2_Mm1t	B2	chr7B2_Mm1t5903831	NonProperStrand	1	1	-inf
chr4	132352772	132352864	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	186	chr7	12930794	12930854	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	80	1	-9.1761
chr3	98319651	98319741	LINE	L1Md_F	L1	chr3L1Md_F98319123	ProperStrand	4	chr3	98316452	98319633	LTR	MTE-int	MaLR	chr3MTE-int98316476	NonProperStrand	2	2	-inf
chr17	45571166	45571429	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	85	chr17	45567931	45568016	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	300	1	-8.1028
chr17	39847759	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	20652129	20652185	SINE	B3	B2	chr9B320652093	ProperStrand	2	1	-5.4040
chr16	90079714	90079738	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	1053	chr8	13375493	13375594	protein_coding	Tfdp1	intron	ENSMUSG00000038482	ProperStrand	232	1	-3.7138
chr1	10024934	10024990	protein_coding	Cops5	intron	ENSMUSG00000025917	ProperStrand	6	chr2	49536668	49536751	protein_coding	Kif5c	intron	ENSMUSG00000026764	ProperStrand	25	1	-18.8476
chr2	121769942	121769973	SINE	B1_Mur4	Alu	chr2B1_Mur4121769864	NonProperStrand	1	chr7	19263439	19263460	protein_coding	Psg20	intron	ENSMUSG00000063305	NonProperStrand	1	1	-inf
chr3	158034567	158034630	protein_coding	Lrrc7	intron	ENSMUSG00000028176	ProperStrand	64	chr4	62669537	62669590	protein_coding	Zfp618	intron	ENSMUSG00000028358	ProperStrand	65	1	-11.7319
chr9	123461822	123461866	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	chr16	30602263	30602279	protein_coding	Fam43a	utr3	ENSMUSG00000046546	NonProperStrand	1	1	-inf
chr7	102035387	102035425	LTR	RMER20A	ERVK	chr7RMER20A102035270	NonProperStrand	4	chr9	47686628	47686728	SINE	B4	B4	chr9B447686456	ProperStrand	1	1	-inf
chr18	44395979	44395997	LTR	RMER21A	ERV1	chr18RMER21A44395389	ProperStrand	1	chr6	67272180	67277766	protein_coding	Il12rb2	intron	ENSMUSG00000018341	NonProperStrand	205	1	-inf
chr17	59794234	59794324	LINE	Lx7	L1	chr17Lx759794246	ProperStrand	1	chr17	36424651	36424751	SINE	B1_Mm	Alu	chr17B1_Mm36424589	ProperStrand	1	1	-inf
chr3	138556716	138556803	protein_coding	Tspan5	intron	ENSMUSG00000028152	ProperStrand	84	chr6	120911998	120912036	protein_coding	Mical3	intron	ENSMUSG00000051586	ProperStrand	65	1	-11.1849
chrX	105847695	105851057	LINE	L1Md_F2	L1	chrXL1Md_F2105843907	NonProperStrand	3	chr16	23243657	23243697	protein_coding	St6gal1	intron	ENSMUSG00000022885	ProperStrand	43	1	-19.2039
chr17	39847802	39847839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr5	146048742	146048857	protein_coding	Zfp498	intron	ENSMUSG00000070420	NonProperStrand	1	1	-inf
chr4	146125990	146126090	protein_coding-noncoding	Zfp600	utr5	ENSMUSG00000066007	ProperStrand	3	chr4	146125752	146125842	protein_coding	Zfp600	utr5	ENSMUSG00000066007	ProperStrand	4	1	-inf
chrX	100469940	100469959	protein_coding	4930519F16Rik	intron	ENSMUSG00000031325	NonProperStrand	4	chr13	97190569	97190606	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-10.7386
chr14	121128011	121128111	LTR	RLTR20B3	ERVK	chr14RLTR20B3121127902	NonProperStrand	2	chr16	33503126	33503216	protein_coding	Zfp148	utr3	ENSMUSG00000022811	ProperStrand	133	2	-inf
chr18	42210057	42210157	LINE	L1MEe	L1	chr18L1MEe42210028	ProperStrand	2	chr18	42210171	42210261	SINE	B1_Mus1	Alu	chr18B1_Mus142210153	ProperStrand	1	1	-inf
chr13	44869610	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	chr16	31094686	31094777	protein_coding	Acap2	utr3	ENSMUSG00000049076	ProperStrand	103	1	-3.4792
chr19	9573552	9573652	LINE	L1_Mus4	L1	chr19L1_Mus49573041	ProperStrand	1	chr9	34248612	34248702	LINE	L1MC4a	L1	chr9L1MC4a34248349	NonProperStrand	1	1	-inf
chr1	193109978	193110098	LTR	RLTR25A	ERVK	chr1RLTR25A193109424	NonProperStrand	6	chr1	193110093	193110187	SINE	PB1	Alu	chr1PB1193110107	ProperStrand	6	6	-inf
chrX	160138680	160138697	LTR	MTEb	MaLR	chrXMTEb160138558	ProperStrand	1	chr9	123461988	123462015	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chrX	135896444	135896539	LTR	LTR52-int	ERVL	chrXLTR52-int135895899	NonProperStrand	1	chr3	84013687	84013742	protein_coding-noncoding	Trim2	utr3	ENSMUSG00000027993	ProperStrand	6	1	-inf
chr10	24782687	24782746	LTR	MT2B	ERVL	chr10MT2B24782607	ProperStrand	1	chr9	123461991	123462037	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr7	80520490	80520590	lincRNA	A730056A06Rik	exon	ENSMUSG00000092033	ProperStrand	89	chr7	80520671	80520761	protein_coding	Rgma	utr5	ENSMUSG00000070509	NonProperStrand	10	1	-14.9024
chr9	43029165	43029201	SINE	B1F2	Alu	chr9B1F243029158	ProperStrand	1	chr14	27429375	27438635	protein_coding	Fam116a	intron	ENSMUSG00000040818	ProperStrand	34	1	-inf
chr5	139426820	139426925	LINE	Lx9	L1	chr5Lx9139426496	NonProperStrand	13	chr5	139426935	139427027	LINE	Lx9	L1	chr5Lx9139426955	NonProperStrand	24	10	-inf
chr13	6590276	6590325	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	460	chr2	76877166	76877917	protein_coding	Ccdc141	intron	ENSMUSG00000044033	ProperStrand	5	1	-13.1090
chr2	33410325	33410341	SINE	ID_B1	B4	chr2ID_B133410320	NonProperStrand	1	chr4	148617748	148617842	protein_coding	Kif1b	intron	ENSMUSG00000063077	ProperStrand	77	1	-inf
chr12	61878114	61878204	LTR	IAPEz-int	ERVK	chr12IAPEz-int61878079	NonProperStrand	1	chr12	61877742	61877842	LTR	IAPLTR2a	ERVK	chr12IAPLTR2a61877691	NonProperStrand	1	1	-inf
chr11	83389735	83390760	protein_coding	Ccl9	intron	ENSMUSG00000019122	NonProperStrand	1	chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	2700	1	-inf
chr18	35584604	35584694	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	364	chr9	15314881	15314981	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	131	1	-6.8605
chr17	39848019	39848046	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr6	115864390	115875283	protein_coding-noncoding	Ift122	utr5	ENSMUSG00000030323	ProperStrand	2	2	-inf
chr1	79792367	79792467	protein_coding	Serpine2	intron	ENSMUSG00000026249	ProperStrand	41	chr1	79738027	79738117	protein_coding	Wdfy1	intron	ENSMUSG00000073643	ProperStrand	46	3	-inf
chr2	177796235	177796289	LINE	L1Md_F	L1	chr2L1Md_F177796200	NonProperStrand	1	chr5	117286228	117287447	LTR	MTC	MaLR	chr5MTC117287346	ProperStrand	3	1	-inf
chr15	101557125	101557225	DNA	MER33	MER1_type	chr15MER33101557123	NonProperStrand	1	chr15	101557398	101557488	DNA	MER63D	AcHobo	chr15MER63D101557335	NonProperStrand	1	1	-inf
chr17	39846132	39846160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	10996	chr18	61582606	61582720	SINE	B1_Mus1	Alu	chr18B1_Mus161582586	ProperStrand	3	1	-7.9693
chr1	100180181	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	118	chr3	88804993	88805081	protein_coding	Ash1l	intron	ENSMUSG00000028053	ProperStrand	44	1	-11.2892
chr16	57572251	57572346	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	346	chr6	93815824	93912897	protein_coding	Magi1	intron	ENSMUSG00000045095	NonProperStrand	20	1	-10.7384
chr11	98821420	98821466	protein_coding	Rara	intron	ENSMUSG00000037992	ProperStrand	32	chr9	56223609	56223676	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	349	1	-9.7641
chr5	146260997	146261234	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	2004	chr7	111074200	111076226	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	91	3	-10.2713
chr5	40204989	40205107	LINE	L1Md_A	L1	chr5L1Md_A40203050	NonProperStrand	2	chr8	75041187	75041219	protein_coding	Med26	intron	ENSMUSG00000045248	NonProperStrand	147	1	-17.6293
chr9	18905072	18905172	LTR	RLTR31A_Mm	ERVK	chr9RLTR31A_Mm18904887	NonProperStrand	1	chr9	18905239	18905329	SINE	B1_Mus2	Alu	chr9B1_Mus218905204	NonProperStrand	1	1	-inf
chr17	35843541	35843617	antisense	Gm4577	.	ENSMUSG00000086867	ProperStrand	10	chr6	142962108	142962161	protein_coding	5730419I09Rik	intron	ENSMUSG00000030279	ProperStrand	75	1	-15.2493
chr9	44341689	44344017	DNA	MER5A	MER1_type	chr9MER5A44341977	ProperStrand	2	chr17	39847277	39847338	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	38364	1	-6.5615
chr17	39847736	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr11	110057195	110057211	protein_coding	Abca6	intron	ENSMUSG00000044749	ProperStrand	4	1	-3.7035
chr18	23956414	23956430	protein_coding-noncoding	Mapre2	utr5	ENSMUSG00000024277	NonProperStrand	1	chr2	5379317	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	2622	1	-inf
chr14	63175067	63175154	protein_coding	Fam124a	intron	ENSMUSG00000035184	NonProperStrand	41	chr6	71531766	71531814	protein_coding	Chmp3	intron	ENSMUSG00000053119	ProperStrand	8	2	-inf
chr13	3472690	3472790	LTR	MYSERV16_I-int	ERVK	chr13MYSERV16_I-int3472460	NonProperStrand	1	chr13	3472886	3472976	LTR	MYSERV16_I-int	ERVK	chr13MYSERV16_I-int3472848	NonProperStrand	1	1	-inf
chrX	161877026	161877045	LINE	L1M2	L1	chrXL1M2161876996	NonProperStrand	1	chr17	39846378	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr17	39847665	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	68431	chr9	21641020	21641063	protein_coding	Gm6484	intron	ENSMUSG00000047822	ProperStrand	4	1	-3.7035
chr10	122565874	122565974	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	35	chr7	103550800	103550890	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	49	1	-13.5218
chr17	56886489	56886589	LTR	RMER15	ERVL	chr17RMER1556886355	ProperStrand	3	chr17	56885157	56886464	SINE	B1_Mus2	Alu	chr17B1_Mus256885076	ProperStrand	1	1	-inf
chr2	103769616	103771738	LINE	L1ME3A	L1	chr2L1ME3A103771226	ProperStrand	1	chr17	39846441	39846510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	70188	1	-inf
chr3	95165998	95166089	SINE	B1_Mur2	Alu	chr3B1_Mur295165967	ProperStrand	2	chr3	95166115	95166215	SINE	B4A	B4	chr3B4A95166087	ProperStrand	2	2	-inf
chr17	39845605	39845677	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	9409	chr7	109623212	109623240	LTR	ERVL-B4-int	ERVL	chr7ERVL-B4-int109623183	NonProperStrand	1	1	-inf
chr16	44163750	44163840	SINE	B1_Mus1	Alu	chr16B1_Mus144163751	NonProperStrand	1	chr16	44163869	44163969	SINE	B3A	B2	chr16B3A44163878	NonProperStrand	1	1	-inf
chr4	132356630	132356673	SINE	ID_B1	B4	chr4ID_B1132356622	NonProperStrand	1	chr9	123461847	123461955	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	17791	1	-inf
chr17	39843612	39843651	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	7772	chr1	74522337	74523515	protein_coding	Usp37	intron	ENSMUSG00000033364	NonProperStrand	40	1	-3.2866
chr4	117493647	117493747	SINE	B2_Mm2	B2	chr4B2_Mm2117493601	NonProperStrand	2	chr4	117493869	117493959	SINE	B2_Mm2	B2	chr4B2_Mm2117493845	NonProperStrand	1	1	-inf
chr7	68741864	68742574	LINE	Lx6	L1	chr7Lx668741867	NonProperStrand	1	chr13	97190585	97190629	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	1943	1	-inf
chr17	39842998	39843076	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	1695	chr16	20675405	20675457	protein_coding	Eif4g1	utr5	ENSMUSG00000045983	ProperStrand	123	1	-4.0106
chr1	151956208	151956317	Simple_repeat	(GGAGA)n	Simple_repeat	chr1(GGAGA)n151956161	NonProperStrand	2	chr9	123461905	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	17791	1	-8.0983
chr17	56563224	56563327	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	78	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	484	1	-7.3256