chr_1	start_1	end_1	type_1	name_1	subtype_1	ensembl_id_1	strand_properness_1	count_1	chr_2	start_2	end_2	type_2	name_2	subtype_2	ensembl_id_2	strand_properness_2	count_2	read_pair_count	ln_p_value
chr1	129678232	129758447	protein_coding	Ccnt2	intron	ENSMUSG00000026349	NonProperStrand	2	chr16	57391466	57391556	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-15.8421
chr10	40258599	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	23	chr2	34773877	34773949	LTR	ORR1A4	MaLR	chr2ORR1A434773889	NonProperStrand	1	1	-inf
chr11	55482710	55482772	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	1	-9.8890
chr9	38775306	38775396	LTR	ETnERV2-int	ERVK	chr9ETnERV2-int38774870	NonProperStrand	1	chr9	38775583	38775663	LTR	ETnERV2-int	ERVK	chr9ETnERV2-int38775447	NonProperStrand	1	1	-inf
chr7	135587954	135588034	protein_coding-noncoding	Tial1	utr3	ENSMUSG00000030846	NonProperStrand	1	chr7	135588166	135588256	protein_coding	Tial1	intron	ENSMUSG00000030846	NonProperStrand	1	1	-inf
chr18	85210251	85210331	LINE	L1Md_A	L1	chr18L1Md_A85209510	ProperStrand	1	chr18	85210567	85210657	LINE	L1_Mur2	L1	chr18L1_Mur285210529	ProperStrand	1	1	-inf
chr18	10052139	10052156	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr2	130172934	130172978	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	13	1	-10.5117
chr11	55482721	55482742	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr10	69310608	69310626	protein_coding	Ank3	intron	ENSMUSG00000069601	ProperStrand	12	1	-9.2852
chr18	35554490	35557228	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr5	114851974	114852038	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	3	-4.5217
chr18	35557154	35557176	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-3.5430
chr9	111791007	111791087	LINE	L1Md_T	L1	chr9L1Md_T111790533	NonProperStrand	1	chr9	111791354	111791444	LINE	L1Md_T	L1	chr9L1Md_T111791207	ProperStrand	1	1	-inf
chr17	39847923	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr14	63528260	63528276	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	3	1	-5.4090
chr3	130730340	130730357	LINE	L1_Mur3	L1	chr3L1_Mur3130730032	ProperStrand	1	chr9	15313887	15313932	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr3	100111628	100111708	LINE	L1_Mur2	L1	chr3L1_Mur2100111406	ProperStrand	1	chr3	100111131	100111221	LINE	Lx3_Mus	L1	chr3Lx3_Mus100110666	ProperStrand	1	1	-inf
chr13	25857655	25857735	LINE	L1Md_F2	L1	chr13L1Md_F225857629	ProperStrand	1	chr13	25857226	25857316	LTR	IAPLTR2b	ERVK	chr13IAPLTR2b25857077	NonProperStrand	1	1	-inf
chr17	39846724	39846878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	72750145	72757507	protein_coding	Armc6	intron	ENSMUSG00000002343	NonProperStrand	3	2	-10.5190
chr5	120660033	120660113	SINE	B2_Mm2	B2	chr5B2_Mm2120659916	NonProperStrand	1	chr5	120660363	120660453	SINE	MIRc	MIR	chr5MIRc120660319	ProperStrand	1	1	-inf
chr11	55482775	55482809	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr13	49684352	49684376	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-6.6933
chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	5	chr13	44869606	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.6839
chr15	25781391	25781407	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	4	chr5	110653699	110653716	protein_coding	Golga3	utr3	ENSMUSG00000029502	ProperStrand	3	1	-18.9508
chr12	78350925	78351015	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr1	71637377	71638518	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	17	1	-11.2363
chr10	39959641	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-8.9326
chr9	20635806	20635886	SINE	ID_B1	B4	chr9ID_B120635812	ProperStrand	1	chr9	20635997	20636087	SINE	RSINE1	B4	chr9RSINE120636002	ProperStrand	1	1	-inf
chr17	24719675	24719755	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr14	52209784	52209874	pseudogene	Gm17174	.	ENSMUSG00000091036	ProperStrand	4	1	-10.5240
chr1	140246070	140246150	LINE	Lx9	L1	chr1Lx9140246028	NonProperStrand	1	chr1	140245890	140245981	LTR	RLTR40	ERVK	chr1RLTR40140245506	ProperStrand	1	1	-inf
chr1	71640354	71640405	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	17	chr9	15315234	15315286	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-5.9228
chr10	39959641	39959659	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	chr13	97190548	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.3138
chr13	87917194	87917274	LINE	L1Md_T	L1	chr13L1Md_T87917090	NonProperStrand	1	chr13	87917526	87917616	LINE	Lx2	L1	chr13Lx287917363	NonProperStrand	1	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	39605196	39605212	protein_coding	Braf	intron	ENSMUSG00000002413	NonProperStrand	3	1	-6.2761
chr2	16959516	16959534	LTR	RMER19C	ERVK	chr2RMER19C16959428	NonProperStrand	1	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-inf
chr17	39843701	39843764	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	chr9	59678130	59678205	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	13	1	-8.4253
chr18	10052131	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr13	44869596	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-3.1894
chr16	4697255	4697335	protein_coding	Dnaja3	intron	ENSMUSG00000004069	ProperStrand	3	chr16	14082616	14082706	protein_coding	2900011O08Rik	intron	ENSMUSG00000044117	NonProperStrand	2	1	-20.7434
chr11	84863740	84863830	protein_coding-noncoding	Usp32	utr3	ENSMUSG00000000804	ProperStrand	1	chr11	84864037	84864117	protein_coding	Usp32	intron	ENSMUSG00000000804	ProperStrand	4	1	-inf
chr8	58689322	58689412	LINE	Lx7	L1	chr8Lx758689083	NonProperStrand	1	chr8	58553182	58553262	protein_coding	Glra3	intron	ENSMUSG00000038257	ProperStrand	4	1	-inf
chr6	115807974	115808082	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr13	44869575	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	4	-7.4817
chr15	80078499	80082924	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr2	32963301	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	4	-13.0579
chr2	152280053	152280143	SINE	PB1D10	Alu	chr2PB1D10152280041	NonProperStrand	1	chr18	35572022	35572087	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-inf
chr9	58169211	58169291	LTR	MER21B	ERV1	chr9MER21B58168948	NonProperStrand	1	chr9	58169580	58169670	SINE	B3	B2	chr9B358169596	NonProperStrand	1	1	-inf
chr4	132309547	132310069	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr9	110281285	110281339	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	2	-3.7374
chr7	110046444	110046542	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr4	145745108	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	2	-11.9312
chr17	39846781	39846807	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	42856799	42856827	protein_coding	Sobp	intron	ENSMUSG00000038248	ProperStrand	2	1	-7.0123
chr4	132270077	132270143	protein_coding	Eya3	intron	ENSMUSG00000028886	NonProperStrand	1	chr8	121476361	121476384	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	32	1	-inf
chr2	22744881	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr10	41256491	41258032	SINE	B4A	B4	chr10B4A41256342	ProperStrand	1	1	-inf
chr17	39847249	39847319	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr15	77760976	77760995	SINE	B2_Mm2	B2	chr15B2_Mm277760811	ProperStrand	1	1	-inf
chr17	39848099	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr11	106501242	106501327	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	3	-4.2975
chr17	39846785	39846802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr19	3647637	3647654	protein_coding	Lrp5	exon	ENSMUSG00000024913	ProperStrand	3	1	-5.9338
chr5	114852010	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr8	47887122	47887140	protein_coding	Irf2	intron	ENSMUSG00000031627	ProperStrand	4	1	-9.0327
chr16	48870353	48870443	LTR	MTE-int	MaLR	chr16MTE-int48870282	ProperStrand	1	chr16	48869996	48870076	LTR	RLTR9E	ERVK	chr16RLTR9E48869864	ProperStrand	1	1	-inf
chr18	46165846	46165935	LINE	L1Md_A	L1	chr18L1Md_A46163912	NonProperStrand	1	chr3	51377505	51377585	SINE	B2_Mm1a	B2	chr3B2_Mm1a51377416	ProperStrand	1	1	-inf
chr17	39847672	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	180258979	180258995	protein_coding	Ntsr1	intron	ENSMUSG00000027568	NonProperStrand	3	1	-5.4090
chr14	32191954	32192024	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr7	109520121	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-5.1341
chr3	31205939	31206019	lincRNA	Gm15496	intron	ENSMUSG00000085953	ProperStrand	5	chrX	166141461	166141552	protein_coding	Mid1	intron	ENSMUSG00000035299	ProperStrand	6	4	-23.2148
chr17	39847181	39847230	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	54190148	54190182	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	2	-3.3710
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-3.7012
chr11	109011795	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	68361908	68361924	protein_coding	A230006K03Rik	intron	ENSMUSG00000078690	NonProperStrand	1	1	-inf
chrX	55811716	55811796	LINE	Lx2B	L1	chrXLx2B55811635	ProperStrand	1	chrX	55811973	55812063	SINE	MIR3	MIR	chrXMIR355811941	NonProperStrand	1	1	-inf
chr9	123461965	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr12	58761969	58761985	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	1	-4.0251
chr11	109011745	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr13	15634103	15634120	protein_coding	Gli3	intron	ENSMUSG00000021318	ProperStrand	3	1	-6.2761
chr9	123462125	123462159	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	97569182	97569199	protein_coding	Nfia	intron	ENSMUSG00000028565	NonProperStrand	2	1	-8.2644
chr2	89528305	89528322	LINE	L1_Mm	L1	chr2L1_Mm89527548	NonProperStrand	3	chr17	39846597	39846660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-5.9338
chr15	40166209	40166299	LTR	ORR1E	MaLR	chr15ORR1E40166052	NonProperStrand	1	chr15	40538743	40538823	protein_coding	Zfpm2	intron	ENSMUSG00000022306	ProperStrand	5	1	-inf
chr2	24651212	24652915	protein_coding	Ehmt1	intron	ENSMUSG00000036893	ProperStrand	3	chr16	23111370	23111426	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-13.6011
chr16	22595099	22595189	misc_RNA	7SK	.	ENSMUSG00000084511	ProperStrand	1	chr16	22594964	22595044	protein_coding	Dgkg	intron	ENSMUSG00000022861	NonProperStrand	3	1	-inf
chrX	31224254	31224344	LINE	L1_Mur3	L1	chrXL1_Mur331224233	ProperStrand	1	chrX	31224130	31224210	SINE	B2_Mm2	B2	chrXB2_Mm231224041	ProperStrand	1	1	-inf
chr10	55963222	55963302	LTR	RLTR17	ERVK	chr10RLTR1755963091	NonProperStrand	1	chr10	55962753	55962843	SINE	B3	B2	chr10B355962647	NonProperStrand	1	1	-inf
chr5	146261079	146261102	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr3	96559941	96559957	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	2	1	-9.9250
chr5	146260994	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr16	23110821	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	15	-5.8402
chr2	130172907	130172964	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	13	chr16	23110912	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-7.4449
chr11	69040405	69040457	protein_coding-noncoding	Gucy2e	utr3	ENSMUSG00000020890	NonProperStrand	2	chr16	23110390	23110449	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-8.9865
chr11	6620373	6620440	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr6	113414249	113414267	protein_coding	Il17re	intron	ENSMUSG00000043088	ProperStrand	2	1	-15.4612
chr11	76852249	76852329	LINE	Lx5	L1	chr11Lx576852257	NonProperStrand	1	chr11	76852457	76852547	LTR	MTEa	MaLR	chr11MTEa76852409	ProperStrand	1	1	-inf
chr9	103111142	103111232	protein_coding	Trf	utr3	ENSMUSG00000032554	ProperStrand	1	chr9	103111523	103111603	protein_coding	Gm20425	intron	ENSMUSG00000090639	ProperStrand	1	1	-inf
chr11	109011796	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr13	38600007	38600044	protein_coding	Txndc5	intron	ENSMUSG00000038991	ProperStrand	2	1	-7.3577
chr10	23785347	23785399	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr16	38158007	38158082	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	1	-5.1039
chr11	6528032	6528132	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr16	23110767	23110800	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-3.9769
chr12	87437681	87437759	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	7	1	-10.9343
chr17	39847475	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	8725099	8725125	SINE	B1_Mur2	Alu	chr19B1_Mur28725020	ProperStrand	2	1	-6.4812
chr3	123507936	123507959	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr7	73941850	73941866	protein_coding	Lass3	intron	ENSMUSG00000030510	ProperStrand	1	1	-inf
chr6	52189838	52189855	protein_coding	Hoxa10	intron	ENSMUSG00000000938	NonProperStrand	3	chr16	17911217	17911310	protein_coding	Dgcr14	intron	ENSMUSG00000003527	ProperStrand	1	1	-inf
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	6	chr11	50756383	50756400	protein_coding	4933414I15Rik	intron	ENSMUSG00000072983	ProperStrand	1	1	-inf
chr5	108472589	108472669	SINE	ID_B1	B4	chr5ID_B1108472549	ProperStrand	1	chr5	108472754	108472844	Simple_repeat	(GGA)n	Simple_repeat	chr5(GGA)n108472731	ProperStrand	1	1	-inf
chr12	99645573	99645655	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr16	35981607	35981636	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-6.5855
chr11	58390477	58390494	LINE	Lx8	L1	chr11Lx858390387	NonProperStrand	1	chr2	90395141	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr14	56372885	56373192	protein_coding	2610027L16Rik	utr3	ENSMUSG00000019297	ProperStrand	1	chr14	56372992	56373082	protein_coding	Cideb	utr3	ENSMUSG00000022219	NonProperStrand	1	1	-inf
chr11	6528033	6528083	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr10	105238436	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-6.4297
chrX	87238363	87238412	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-3.6416
chr2	32963383	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr7	97805685	97805706	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	32	1	-5.0799
chr11	109011751	109011773	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	71181737	71181758	protein_coding	Slc25a12	intron	ENSMUSG00000027010	NonProperStrand	2	1	-7.3577
chr19	24942235	24942296	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr5	146261080	146261116	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-4.8622
chr13	44869579	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr12	11156994	11157012	protein_coding	Kcns3	utr5	ENSMUSG00000043673	ProperStrand	1	1	-inf
chr1	122357190	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr11	6619843	6619899	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	1	-8.6678
chr12	110616755	110616832	LTR	MLT1A0	MaLR	chr12MLT1A0110616583	ProperStrand	1	chr17	39846816	39846881	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr11	109011790	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	6483930	6483948	protein_coding	Dgkk	intron	ENSMUSG00000062393	ProperStrand	3	1	-6.2761
chrX	138747518	138747608	LINE	L1M2	L1	chrXL1M2138747502	NonProperStrand	1	chrX	138747360	138747440	LTR	ORR1D1	MaLR	chrXORR1D1138747142	ProperStrand	1	1	-inf
chr5	30876477	30876686	LTR	ORR1D1	MaLR	chr5ORR1D130876308	NonProperStrand	1	chr8	13876193	13876226	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-inf
chr17	39847181	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr6	131380324	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	1	-3.0862
chr5	146261180	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr5	115562543	115563362	protein_coding	Acads	intron	ENSMUSG00000029545	NonProperStrand	6	2	-11.9101
chr3	30138479	30138559	protein_coding	Mecom	intron	ENSMUSG00000027684	NonProperStrand	3	chr3	30255030	30255120	protein_coding	Mecom	intron	ENSMUSG00000027684	ProperStrand	5	1	-18.4523
chr5	53652649	53652700	LINE	L4	RTE	chr5L453652632	NonProperStrand	1	chr9	120130449	120130505	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-inf
chr3	13907117	13907207	protein_coding	Ralyl	intron	ENSMUSG00000039717	ProperStrand	4	chr10	67010928	67011008	protein_coding	Ado	exon	ENSMUSG00000057134	ProperStrand	5	1	-17.7431
chr14	32191908	32191952	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr9	61914375	61914397	protein_coding	Glce	intron	ENSMUSG00000032252	ProperStrand	1	1	-inf
chr11	68902356	68903182	protein_coding-noncoding	Vamp2	utr5	ENSMUSG00000020894	NonProperStrand	1	chr11	68903270	68904395	protein_coding	Vamp2	exon	ENSMUSG00000020894	NonProperStrand	1	1	-inf
chr10	23785359	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	mmu-miR-6240	3	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	2	-4.3801
chr10	80248955	80249035	protein_coding-noncoding	Dot1l	utr5	ENSMUSG00000061589	NonProperStrand	1	chr10	80248507	80248597	protein_coding	Dot1l	intron	ENSMUSG00000061589	NonProperStrand	2	1	-inf
chr19	24942332	24942369	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr9	123461966	123462003	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-3.3034
chr17	39846671	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	98027409	98027515	protein_coding	Reg4	intron	ENSMUSG00000027876	ProperStrand	1	1	-inf
chr10	49779698	49779788	LINE	L1M5	L1	chr10L1M549779649	NonProperStrand	1	chr10	49779835	49779915	LINE	L1_Mus4	L1	chr10L1_Mus449779828	ProperStrand	1	1	-inf
chr4	139376561	139376641	protein_coding	Pax7	intron	ENSMUSG00000028736	ProperStrand	7	chr8	84276744	84276834	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	28	1	-12.8715
chr10	17124521	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr5	144175988	144176017	protein_coding	Kdelr2	intron	ENSMUSG00000079111	ProperStrand	1	1	-inf
chr7	79911944	79912024	LINE	L1_Mus1	L1	chr7L1_Mus179911078	ProperStrand	1	chr7	79912221	79912311	Simple_repeat	(TA)n	Simple_repeat	chr7(TA)n79912237	ProperStrand	1	1	-inf
chr17	70963690	70963790	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr17	71598022	71598039	protein_coding	Lpin2	utr3	ENSMUSG00000024052	NonProperStrand	1	1	-inf
chr2	23857933	23858013	LTR	RMER17C	ERVK	chr2RMER17C23857741	NonProperStrand	1	chr2	23858174	23858264	Simple_repeat	(TA)n	Simple_repeat	chr2(TA)n23858145	ProperStrand	1	1	-inf
chr17	39848532	39848596	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr6	90780688	90780788	LTR	RLTR28	ERVL	chr6RLTR2890780284	ProperStrand	1	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	111877282	111877300	protein_coding	Kcnc2	intron	ENSMUSG00000035681	NonProperStrand	3	1	-6.2761
chr5	110692047	110692108	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	chr17	24720821	24720869	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-4.6202
chr16	23110382	23111374	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr8	70895758	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	8	-5.1030
chr11	54169610	54169690	protein_coding	Acsl6	intron	ENSMUSG00000020333	NonProperStrand	1	chr11	54274404	54274494	protein_coding	Fnip1	intron	ENSMUSG00000035992	NonProperStrand	2	1	-inf
chr1	167772649	167772729	protein_coding	Cd247	intron	ENSMUSG00000005763	ProperStrand	3	chr1	165987631	165987721	protein_coding	Sele	utr3	ENSMUSG00000026582	ProperStrand	1	1	-inf
chr6	115807988	115808087	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr8	95746113	95746154	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-6.0729
chr2	122011619	122011635	protein_coding	Patl2	intron	ENSMUSG00000027233	ProperStrand	2	chr2	32963283	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-11.2136
chr16	23110756	23110791	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr5	110692047	110692108	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	1	-6.0841
chr10	76515175	76515255	protein_coding	Col18a1	utr3	ENSMUSG00000001435	ProperStrand	12	chr10	76514512	76514602	protein_coding	Slc19a1	intron	ENSMUSG00000001436	NonProperStrand	3	1	-16.5610
chr18	7750476	7750566	LTR	RLTR9E	ERVK	chr18RLTR9E7750392	NonProperStrand	1	chr18	7750269	7750349	SINE	B1_Mur1	Alu	chr18B1_Mur17750220	NonProperStrand	1	1	-inf
chr17	39847864	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	74632832	74632848	protein_coding	Zfp142	intron	ENSMUSG00000026135	NonProperStrand	2	1	-6.4812
chr13	106038003	106038083	protein_coding	Rnf180	intron	ENSMUSG00000021720	NonProperStrand	1	chr18	25852343	25852433	protein_coding	Celf4	intron	ENSMUSG00000024268	NonProperStrand	4	1	-inf
chr16	96610408	96610424	protein_coding	Igsf5	intron	ENSMUSG00000000159	NonProperStrand	3	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-9.8520
chr2	32963383	32963419	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr16	23111394	23111425	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-4.1815
chr10	23785351	23785399	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr9	20873719	20873790	protein_coding	Fdx1l	intron	ENSMUSG00000079677	ProperStrand	2	1	-10.3808
chr6	10071737	10071827	LINE	L1Md_F2	L1	chr6L1Md_F210071691	NonProperStrand	1	chr6	10071518	10071598	SINE	B4A	B4	chr6B4A10071392	NonProperStrand	1	1	-inf
chrX	160588991	160589007	protein_coding	Ace2	intron	ENSMUSG00000015405	NonProperStrand	3	chr9	70207634	70207668	protein_coding	Myo1e	intron	ENSMUSG00000032220	ProperStrand	1	1	-inf
chr11	69669699	69669730	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr7	127527903	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-5.3808
chr11	70906643	70906733	protein_coding	Nlrp1a	intron	ENSMUSG00000069830	ProperStrand	3	chr4	57447350	57447430	protein_coding	Palm2	utr5	ENSMUSG00000090053	ProperStrand	9	1	-17.1740
chrX	74344551	74344568	LINE	L1Md_F2	L1	chrXL1Md_F274343867	ProperStrand	4	chr16	23110835	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr7	110046418	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr9	120130446	120130485	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-4.2399
chrX	60481803	60481883	LINE	L1Md_F2	L1	chrXL1Md_F260481373	NonProperStrand	1	chrX	60482335	60482425	LTR	MTC-int	MaLR	chrXMTC-int60482339	NonProperStrand	1	1	-inf
chr15	85177762	85177788	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	chr4	56897627	56897717	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-9.5453
chr11	109011751	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr18	24580074	24580090	LTR	ORR1C1	MaLR	chr18ORR1C124579904	ProperStrand	3	1	-6.2761
chr3	86138806	86138855	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	14	chr13	44869609	44869683	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-5.5164
chr17	39846604	39846693	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr12	101050973	101051024	protein_coding	2610021K21Rik	intron	ENSMUSG00000021176	NonProperStrand	2	1	-12.9931
chr4	15683925	15684015	LINE	L1M3	L1	chr4L1M315683871	NonProperStrand	1	chr4	15684231	15684311	LINE	Lx4A	L1	chr4Lx4A15684221	ProperStrand	1	1	-inf
chr11	109011745	109011768	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	10899204	10899222	LTR	MTD	MaLR	chr4MTD10899172	NonProperStrand	4	1	-5.5999
chr16	21124440	21124520	LTR	LTRIS5	ERV1	chr16LTRIS521124196	ProperStrand	1	chr16	21124641	21124731	LTR	MYSERV16_I-int	ERVK	chr16MYSERV16_I-int21124641	NonProperStrand	1	1	-inf
chr12	99645574	99645662	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr5	63049923	63049941	protein_coding	Arap2	intron	ENSMUSG00000037999	NonProperStrand	5	1	-12.6960
chr17	39848099	39848145	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr4	132776260	132776657	protein_coding	Cd164l2	intron	ENSMUSG00000028865	ProperStrand	2	1	-10.7569
chr4	126384890	126384980	protein_coding-noncoding	Psmb2	utr5	ENSMUSG00000028837	NonProperStrand	1	chr4	126385170	126385250	protein_coding	Psmb2	intron	ENSMUSG00000028837	NonProperStrand	1	1	-inf
chr15	8685393	8685412	LTR	MTB_Mm	MaLR	chr15MTB_Mm8685123	NonProperStrand	2	chr5	114851995	114852018	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-10.8185
chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr11	96821281	96821332	protein_coding	Sp2	intron	ENSMUSG00000018678	ProperStrand	4	1	-7.2097
chr7	82108427	82108517	LTR	MTC	MaLR	chr7MTC82108127	ProperStrand	1	chr7	82108826	82108906	LTR	RLTR31_Mm	ERVK	chr7RLTR31_Mm82108495	ProperStrand	1	1	-inf
chr17	70963683	70963765	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr16	38158007	38158097	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	1	-9.7997
chr8	72749789	72749822	protein_coding	Armc6	intron	ENSMUSG00000002343	NonProperStrand	3	chr13	44869922	44870022	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-8.8788
chr17	39847659	39847680	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	120347157	120347187	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	3	1	-5.4090
chr12	17279693	17279716	protein_coding	Pdia6	intron	ENSMUSG00000020571	ProperStrand	1	chr13	97190550	97190596	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr11	69669660	69669740	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr4	132974182	132974202	protein_coding	Slc9a1	intron	ENSMUSG00000028854	ProperStrand	8	1	-7.5383
chr9	9595981	9596071	LTR	RMER17B	ERVK	chr9RMER17B9595978	NonProperStrand	1	chr9	9596181	9596261	LTR	RMER17B	ERVK	chr9RMER17B9595983	NonProperStrand	1	1	-inf
chr6	29694558	29694575	protein_coding	Smo	intron	ENSMUSG00000001761	NonProperStrand	3	chr12	107315402	107315428	protein_coding	Vrk1	utr3	ENSMUSG00000021115	NonProperStrand	5	1	-18.4523
chrX	37082975	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr7	16796061	16796115	protein_coding	Dhx34	intron	ENSMUSG00000006019	NonProperStrand	2	1	-13.4670
chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-6.0284
chr11	20576467	20576557	LINE	Lx5	L1	chr11Lx520576400	ProperStrand	1	chr11	20576658	20576738	SINE	ID_B1	B4	chr11ID_B120576630	NonProperStrand	1	1	-inf
chr7	4793516	4793580	processed_transcript	Gm15525	.	ENSMUSG00000084815	NonProperStrand	6	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-7.3053
chr17	39847864	39847887	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	65829253	65829270	protein_coding	Csnk1g1	intron	ENSMUSG00000032384	ProperStrand	3	1	-5.4090
chr7	35896584	35896674	SINE	B4	B4	chr7B435896594	ProperStrand	1	chr7	35896786	35896866	Satellite	ZP3AR	Satellite	chr7ZP3AR35896647	ProperStrand	1	1	-inf
chr11	109011751	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	35046243	35046262	protein_coding	Ehmt2	intron	ENSMUSG00000013787	NonProperStrand	1	1	-inf
chr17	39846962	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr15	77775118	77775156	protein_coding	Foxred2	intron	ENSMUSG00000016552	ProperStrand	7	1	-4.0682
chr5	30060874	30060963	SINE	B3A	B2	chr5B3A30060872	NonProperStrand	1	chr12	67667923	67668003	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chrX	96304371	96304451	LTR	RMER15	ERVL	chrXRMER1596304361	ProperStrand	1	chr15	72994539	72994628	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	5	1	-inf
chr17	39847441	39847471	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	59272079	59272097	protein_coding	Arih1	intron	ENSMUSG00000025234	ProperStrand	2	1	-6.4812
chr3	65949582	65949672	protein_coding	Veph1	intron	ENSMUSG00000027831	NonProperStrand	4	chr3	95668451	95668531	protein_coding	Mrps21	intron	ENSMUSG00000054312	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr12	110693815	110694226	protein_coding	Dlk1	intron	ENSMUSG00000040856	NonProperStrand	5	2	-12.7033
chr9	47654655	47654673	protein_coding	Cadm1	intron	ENSMUSG00000032076	NonProperStrand	5	chr9	118674977	118675045	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	7	1	-16.5030
chr12	62099269	62099349	LINE	Lx7	L1	chr12Lx762098633	NonProperStrand	1	chr12	62099603	62099693	LTR	RMER19A	ERVK	chr12RMER19A62099507	NonProperStrand	1	1	-inf
chr5	25100151	25100168	LTR	ORR1B1-int	MaLR	chr5ORR1B1-int25099370	NonProperStrand	1	chr4	56897723	56897757	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-inf
chr16	23110390	23111377	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr13	97190540	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	15	-7.3594
chr8	112389091	112389171	antisense	Gm17344	.	ENSMUSG00000078143	NonProperStrand	1	chr8	112361132	112361222	protein_coding	Ap1g1	intron	ENSMUSG00000031731	ProperStrand	1	1	-inf
chr3	117664613	117664703	LINE	L1Md_F2	L1	chr3L1Md_F2117663453	ProperStrand	1	chr3	117664797	117664877	LINE	L1Md_F2	L1	chr3L1Md_F2117664731	ProperStrand	1	1	-inf
chr5	3653675	3653755	LINE	Lx9	L1	chr5Lx93653461	ProperStrand	1	chr8	3390073	3390163	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	NonProperStrand	4	1	-inf
chr11	70085329	70085419	LINE	L1M3c	L1	chr11L1M3c70085118	NonProperStrand	1	chr11	70085027	70085107	SINE	B1F	Alu	chr11B1F70085018	NonProperStrand	1	1	-inf
chr10	78171604	78171620	Low_complexity	AT_rich	Low_complexity	chr10AT_rich78171571	ProperStrand	1	chr5	35417149	35417285	protein_coding	Dok7	intron	ENSMUSG00000044716	NonProperStrand	1	1	-inf
chr4	5773935	5773996	protein_coding	Fam110b	intron	ENSMUSG00000049119	ProperStrand	2	chr10	45162431	45162531	protein_coding	Lin28b	intron	ENSMUSG00000063804	NonProperStrand	3	1	-20.8207
chr11	109011748	109011853	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	105238488	105238523	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	4	-5.5203
chr7	29446463	29446574	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr5	121205025	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	2	-9.2461
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	96724264	96724296	protein_coding	Gja8	utr5	ENSMUSG00000049908	ProperStrand	8	1	-4.1268
chrX	87238358	87238423	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr16	23110837	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	3	-3.3684
chr11	109011657	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	131106120	131106137	protein_coding	Btk	intron	ENSMUSG00000031264	ProperStrand	3	1	-6.2761
chr17	39846429	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	40803630	40804081	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	23	4	-7.5621
chr2	51569405	51569485	lincRNA	Gm13490	intron	ENSMUSG00000085014	NonProperStrand	2	chr18	44599773	44599863	protein_coding	Mcc	intron	ENSMUSG00000071856	ProperStrand	2	1	-21.5566
chr15	16065688	16065768	LINE	Lx7	L1	chr15Lx716065702	ProperStrand	1	chr15	16065916	16066006	LINE	Lx7	L1	chr15Lx716065882	ProperStrand	1	1	-inf
chr2	34020418	34020436	LTR	ORR1A3	MaLR	chr2ORR1A334020122	ProperStrand	3	chr14	65076342	65076358	SINE	B1_Mur1	Alu	chr14B1_Mur165076217	ProperStrand	2	1	-20.7434
chr17	39846603	39846635	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr7	109520133	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	NonProperStrand	3	1	-11.8956
chr8	3803266	3803344	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	1	-10.4601
chr12	87437716	87437806	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr18	35557152	35557176	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-4.2928
chr1	122357188	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr12	87437682	87437812	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	2	-8.3273
chr2	101293097	101293177	LTR	IAPEY3_LTR	ERVK	chr2IAPEY3_LTR101293092	NonProperStrand	1	chr2	101292657	101292747	LTR	MTA_Mm	MaLR	chr2MTA_Mm101292577	NonProperStrand	1	1	-inf
chr17	50420133	50420157	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr15	47539993	47540062	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	16	1	-11.5314
chr10	23785346	23785432	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr4	108633234	108633523	antisense	8030443G20Rik	.	ENSMUSG00000086483	NonProperStrand	3	1	-9.2859
chr12	102948904	102948922	protein_coding	Tc2n	intron	ENSMUSG00000021187	ProperStrand	2	chr19	29612464	29612480	protein_coding	C030046E11Rik	intron	ENSMUSG00000038658	ProperStrand	11	1	-17.8406
chr10	23785349	23785365	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr18	25491207	25491224	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	5	1	-8.0893
chr12	78350927	78350959	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr16	23111392	23111432	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-9.0049
chr5	146261174	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	81529853	81529930	protein_coding	Slco3a1	intron	ENSMUSG00000025790	NonProperStrand	8	1	-6.6207
chr7	30334371	30334461	LINE	L1Md_F2	L1	chr7L1Md_F230334212	NonProperStrand	2	chr7	30334022	30334102	LTR	ORR1C2	MaLR	chr7ORR1C230333978	NonProperStrand	1	1	-inf
chr1	161036071	161036088	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	8	chr11	106501307	106501325	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-8.6594
chr2	90395147	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr12	104991008	104991026	pseudogene	Gm17042	.	ENSMUSG00000090989	NonProperStrand	1	1	-inf
chr10	23785399	23785440	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr7	141448903	141448937	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	1	-3.2390
chr4	44965307	44965399	LINE	Lx8	L1	chr4Lx844965263	NonProperStrand	1	chr4	44965555	44965635	Simple_repeat	(GGA)n	Simple_repeat	chr4(GGA)n44965484	NonProperStrand	1	1	-inf
mmu-miR-6240	1	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr13	91888844	91888861	protein_coding	Acot12	intron	ENSMUSG00000021620	NonProperStrand	2	1	-13.6458
chr7	80349688	80349768	LINE	Lx6	L1	chr7Lx680349333	ProperStrand	1	chr10	121008398	121008488	protein_coding	Tbk1	intron	ENSMUSG00000020115	NonProperStrand	1	1	-inf
chr7	108881568	108881585	protein_coding	Clpb	intron	ENSMUSG00000001829	ProperStrand	3	chr13	59608165	59608184	protein_coding	Agtpbp1	intron	ENSMUSG00000021557	NonProperStrand	3	1	-19.6922
chr14	21077332	21077412	SINE	B1_Mur2	Alu	chr14B1_Mur221077254	ProperStrand	1	chr14	21077452	21077542	SINE	B4	B4	chr14B421077476	ProperStrand	1	1	-inf
chr18	51191833	51191923	LINE	Lx4B	L1	chr18Lx4B51191629	NonProperStrand	1	chr18	51191951	51192031	LINE	Lx4B	L1	chr18Lx4B51191923	NonProperStrand	1	1	-inf
chr11	69667875	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr19	8888596	8888685	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	4	-4.1351
chr8	120181367	120181447	LTR	ORR1B1	MaLR	chr8ORR1B1120181191	ProperStrand	1	chr8	120181120	120181210	Simple_repeat	(CA)n	Simple_repeat	chr8(CA)n120181107	NonProperStrand	1	1	-inf
chr10	99006199	99006279	LINE	L1MA9	L1	chr10L1MA999006153	NonProperStrand	1	chr10	99005912	99006002	Simple_repeat	(TCC)n	Simple_repeat	chr10(TCC)n99005827	NonProperStrand	1	1	-inf
chr10	122565928	122566008	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr8	46648748	46648838	protein_coding	Sorbs2	intron	ENSMUSG00000031626	ProperStrand	2	1	-16.3142
chr2	157082025	157082115	protein_coding	4922505G16Rik	intron	ENSMUSG00000074627	NonProperStrand	2	chr2	157095077	157095157	protein_coding	4922505G16Rik	intron	ENSMUSG00000074627	ProperStrand	3	1	-20.8207
chr2	31983184	31983201	Simple_repeat	(GGAAA)n	Simple_repeat	chr2(GGAAA)n31983138	NonProperStrand	1	chr13	44869897	44870020	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-inf
chr17	39846458	39846479	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	169769149	169769165	protein_coding	Lmx1a	intron	ENSMUSG00000026686	NonProperStrand	2	1	-7.0123
chr11	97781690	97781747	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr9	110281288	110281319	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	2	-7.6331
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr16	23110771	23110800	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-4.4422
chr2	29705160	29705250	SINE	B1_Mur4	Alu	chr2B1_Mur429705082	NonProperStrand	1	chr2	29705422	29705502	SINE	RSINE1	B4	chr2RSINE129705364	NonProperStrand	1	1	-inf
chr13	97190551	97190604	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr5	142906735	142906751	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	14	1	-5.4523
chr3	128290604	128290694	LINE	L1Md_F2	L1	chr3L1Md_F2128289751	NonProperStrand	1	chr3	128291132	128291212	LINE	L1Md_F2	L1	chr3L1Md_F2128290751	NonProperStrand	1	1	-inf
chr4	132309464	132310016	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr2	32963314	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	5	-3.6945
chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr5	107905176	107905288	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-6.6858
chr15	26835125	26835205	LTR	IAPEz-int	ERVK	chr15IAPEz-int26835140	ProperStrand	1	chr15	26834929	26835019	LTR	IAPLTR1a_Mm	ERVK	chr15IAPLTR1a_Mm26834803	ProperStrand	1	1	-inf
chr12	104502268	104502358	Simple_repeat	(GA)n	Simple_repeat	chr12(GA)n104502254	NonProperStrand	2	chr12	104502455	104502535	Simple_repeat	(GAA)n	Simple_repeat	chr12(GAA)n104502449	NonProperStrand	2	2	-inf
chr3	23773549	23773629	LINE	L1Md_F2	L1	chr3L1Md_F223773336	ProperStrand	1	chr3	23773269	23773359	LTR	MTE2b	MaLR	chr3MTE2b23773225	ProperStrand	1	1	-inf
chr1	136698913	136698932	protein_coding	Ppp1r12b	intron	ENSMUSG00000073557	NonProperStrand	5	chr12	105031235	105031348	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-12.2090
chr6	125162667	125162881	LINE	L1MEd	L1	chr6L1MEd125162471	ProperStrand	1	chr6	125162037	125162237	SINE	PB1	Alu	chr6PB1125162033	ProperStrand	1	1	-inf
chr13	5669469	5669559	LINE	Lx7	L1	chr13Lx75669463	ProperStrand	1	chr13	5669164	5669244	LTR	RLTR43A	ERVK	chr13RLTR43A5669140	NonProperStrand	1	1	-inf
chr15	74207908	74207998	LINE	L1MA6	L1	chr15L1MA674207913	NonProperStrand	1	chr15	74208148	74208228	LINE	L1MA6	L1	chr15L1MA674208101	NonProperStrand	1	1	-inf
chr5	146260994	146261223	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr2	90395129	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	13	-5.3437
chr16	23111617	23111642	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr2	158356420	158356444	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-3.6238
chr15	85177753	85177782	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	chr5	142905681	142906685	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	14	1	-11.6375
chr10	23785419	23785441	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr15	99074814	99074832	protein_coding	Mcrs1	intron	ENSMUSG00000037570	ProperStrand	1	1	-inf
chr4	108072702	108072792	LTR	MT2B2	ERVL	chr4MT2B2108072710	ProperStrand	1	chr4	108073226	108073306	protein_coding	Gpx7	utr3	ENSMUSG00000028597	ProperStrand	1	1	-inf
chr16	4977994	4978010	protein_coding	4930451G09Rik	utr3	ENSMUSG00000022543	NonProperStrand	1	chr1	181921753	181923570	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	10	1	-inf
chr14	11553590	11553624	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	8	chr4	145745107	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-12.3125
chr8	25459379	25459469	LINE	L1_Rod	L1	chr8L1_Rod25459285	NonProperStrand	1	chr8	25459524	25459604	Simple_repeat	(CAGA)n	Simple_repeat	chr8(CAGA)n25459545	NonProperStrand	1	1	-inf
chr11	109011822	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	21368927	21368943	protein_coding	Gpr158	intron	ENSMUSG00000045967	NonProperStrand	11	1	-3.5018
chr17	39847037	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	25892041	25892057	protein_coding	Trp63	utr3	ENSMUSG00000022510	ProperStrand	4	1	-5.2608
chr11	109011645	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	149120027	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	38	-19.1833
chr3	116883647	116883737	LINE	L1MC3	L1	chr3L1MC3116883573	ProperStrand	1	chr3	116883791	116883871	Simple_repeat	(GA)n	Simple_repeat	chr3(GA)n116883805	NonProperStrand	1	1	-inf
chr9	114390202	114390245	SINE	B4	B4	chr9B4114390143	NonProperStrand	1	chr5	114851994	114852017	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-inf
chr17	39847223	39847241	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr5	16371336	16371352	Simple_repeat	(TC)n	Simple_repeat	chr5(TC)n16371320	NonProperStrand	1	1	-inf
chr17	39848490	39848555	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr7	133121662	133121752	protein_coding	Gsg1l	intron	ENSMUSG00000046182	ProperStrand	14	1	-7.6479
chr5	114851986	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	2	-4.8764
chr5	146261254	146261279	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr17	34950993	34951017	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-7.9671
chr11	32221984	32222013	LTR	MTEb-int	MaLR	chr11MTEb-int32221970	NonProperStrand	1	chr17	39847081	39847131	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-inf
chr11	47472522	47472612	protein_coding	Sgcd	intron	ENSMUSG00000020354	NonProperStrand	11	chr11	107768037	107768117	protein_coding	Cacng5	intron	ENSMUSG00000040373	NonProperStrand	1	1	-inf
chr2	4413995	4414075	protein_coding	Frmd4a	intron	ENSMUSG00000026657	NonProperStrand	7	chr2	4551451	4551541	protein_coding	Prpf18	intron	ENSMUSG00000039449	ProperStrand	1	1	-inf
chr14	90726286	90726366	LINE	L1MA9	L1	chr14L1MA990726166	NonProperStrand	1	chr14	90725940	90726030	LINE	Lx9	L1	chr14Lx990725858	ProperStrand	1	1	-inf
chr15	60029476	60029566	LINE	L1Md_F2	L1	chr15L1Md_F260028694	ProperStrand	1	chr15	64003994	64004074	protein_coding	Asap1	intron	ENSMUSG00000022377	NonProperStrand	7	1	-inf
chr11	109011819	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	58083752	58083770	LINE	L1_Mus3	L1	chr2L1_Mus358081863	ProperStrand	7	1	-4.3977
chr15	17100685	17100775	LINE	L1_Mur3	L1	chr15L1_Mur317100661	NonProperStrand	1	chr15	17100259	17100339	LINE	Lx4B	L1	chr15Lx4B17100155	NonProperStrand	1	1	-inf
chr13	97190552	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr12	106227883	106227900	protein_coding	4831426I19Rik	intron	ENSMUSG00000054150	ProperStrand	1	1	-inf
chr5	139272032	139272049	protein_coding	Fam20c	intron	ENSMUSG00000025854	ProperStrand	4	chr2	130276269	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-9.6304
chr7	37245887	37245904	LTR	MLT1A0	MaLR	chr7MLT1A037245688	ProperStrand	2	chr16	23110755	23110785	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-12.5418
chr10	41206839	41206929	protein_coding-noncoding	Smpd2	utr3	ENSMUSG00000019822	ProperStrand	1	chr10	41207066	41207146	protein_coding	Smpd2	exon	ENSMUSG00000019822	ProperStrand	1	1	-inf
chrX	7867560	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	16	chr16	23110755	23110885	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-4.3030
chr13	112578210	112578307	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	4	1	-8.5381
chr3	14576704	14576721	LINE	Lx5	L1	chr3Lx514575408	ProperStrand	3	chr17	39846759	39846780	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-5.9338
chr8	85050207	85050242	LINE	L1Md_A	L1	chr8L1Md_A85049904	NonProperStrand	2	chr5	74093597	74093650	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	1	-17.8406
chr3	123507989	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr16	17222212	17222233	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	6	1	-7.2573
chr14	59715191	59715271	LINE	Lx9	L1	chr14Lx959714280	ProperStrand	1	chr14	59715624	59715714	LINE	Lx9	L1	chr14Lx959715638	ProperStrand	1	1	-inf
chr1	34174753	34184043	protein_coding	Dst	intron	ENSMUSG00000026131	ProperStrand	11	chr5	30752056	30752076	protein_coding	Otof	intron	ENSMUSG00000062372	NonProperStrand	2	1	-17.8376
chr17	39847179	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr8	95746070	95746184	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	3	-4.9927
chr12	63266199	63266289	LINE	L1Md_F3	L1	chr12L1Md_F363263901	NonProperStrand	1	chr7	47188545	47188625	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	7	1	-inf
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	130172930	130172976	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	13	1	-3.1856
chr17	39847562	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	63179003	63179135	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	3	-4.4710
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-3.5521
chr18	73415792	73415872	LINE	L1_Mur2	L1	chr18L1_Mur273414977	ProperStrand	1	chr18	73416416	73416506	LINE	L1_Mur2	L1	chr18L1_Mur273416201	ProperStrand	1	1	-inf
chr7	118542244	118542324	LINE	Lx4B	L1	chr7Lx4B118540674	NonProperStrand	2	chr7	118847651	118847741	protein_coding	Galntl4	intron	ENSMUSG00000038296	ProperStrand	1	1	-inf
chr9	120130419	120130509	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr13	13472917	13476222	protein_coding	Gpr137b	intron	ENSMUSG00000021306	NonProperStrand	2	1	-12.3739
chr2	5379273	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr5	6778578	6778595	protein_coding	Zfp804b	intron	ENSMUSG00000092094	NonProperStrand	1	1	-inf
chr17	39847082	39847128	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr15	85177765	85177787	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	1	-3.1576
chr4	39690315	39690395	Simple_repeat	(GA)n	Simple_repeat	chr4(GA)n39690314	ProperStrand	1	chr4	39690606	39690696	Simple_repeat	(TTTC)n	Simple_repeat	chr4(TTTC)n39690532	ProperStrand	1	1	-inf
chr9	35561879	35561896	LINE	L1Md_F3	L1	chr9L1Md_F335558938	ProperStrand	1	chr6	12455588	12455604	protein_coding	Thsd7a	intron	ENSMUSG00000032625	NonProperStrand	6	1	-inf
chr14	75847957	75847985	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr15	34440833	34440894	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-3.2819
chr14	56179067	56179147	protein_coding-noncoding	Dcaf11	utr5	ENSMUSG00000022214	ProperStrand	1	chr14	56179447	56179537	protein_coding	Dcaf11	utr5	ENSMUSG00000022214	ProperStrand	1	1	-inf
chr18	42202475	42202491	SINE	MIR	MIR	chr18MIR42202444	ProperStrand	2	chr1	71612514	71612614	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	4	1	-19.9190
chr17	39846766	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr7	111071966	111072020	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	4	1	-5.2608
chrX	95025863	95025881	LINE	L1M2	L1	chrXL1M295025539	NonProperStrand	1	chr7	68119619	68119744	LTR	IAPLTR3-int	ERVK	chr7IAPLTR3-int68118992	ProperStrand	1	1	-inf
chr11	109011749	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	120341198	120341215	LINE	L1MC	L1	chr3L1MC120341162	NonProperStrand	1	1	-inf
chr17	39846583	39846740	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr16	57391461	57391676	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	2	-11.3277
chr4	116141412	116141492	LTR	MT2B	ERVL	chr4MT2B116141358	ProperStrand	1	chr4	116141188	116141278	LTR	MurERV4-int	ERVK	chr4MurERV4-int116140005	NonProperStrand	1	1	-inf
chr11	103646420	103646437	protein_coding	Wnt3	intron	ENSMUSG00000000125	ProperStrand	5	chr13	44869598	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.6839
chr9	79572403	79572483	LTR	ORR1D1	MaLR	chr9ORR1D179572379	NonProperStrand	1	chr9	79572183	79572273	Simple_repeat	(TC)n	Simple_repeat	chr9(TC)n79571722	NonProperStrand	1	1	-inf
chr8	28060821	28060901	LINE	Lx7	L1	chr8Lx728059662	ProperStrand	1	chr8	28061222	28061312	LINE	Lx8	L1	chr8Lx828061118	ProperStrand	1	1	-inf
chr17	39846583	39846696	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr13	92449663	92449679	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	9	1	-9.4166
chr11	109011793	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	14895000	14895035	protein_coding	Cln8	exon	ENSMUSG00000026317	ProperStrand	2	1	-7.3577
chr11	109011745	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	79892034	79892050	protein_coding	Tcf3	intron	ENSMUSG00000020167	NonProperStrand	1	1	-inf
chr15	59063324	59063345	LTR	RLTR19	ERVK	chr15RLTR1959063078	NonProperStrand	2	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-10.2439
chr17	39846369	39846429	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr18	8906466	8906486	LTR	MTEa	MaLR	chr18MTEa8906320	NonProperStrand	1	1	-inf
chrX	4136307	4136334	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	chr2	32963314	32963360	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-5.9127
chr11	104505096	104505186	protein_coding	Itgb3	exon	ENSMUSG00000020689	ProperStrand	1	chr11	105578512	105578592	protein_coding	Tanc2	intron	ENSMUSG00000053580	NonProperStrand	4	1	-inf
chr11	116674151	116674217	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	3	chr11	97395253	97395269	protein_coding	Srcin1	intron	ENSMUSG00000038453	ProperStrand	2	1	-20.7434
chr7	81834518	81834598	LINE	Lx9	L1	chr7Lx981834364	ProperStrand	1	chr7	81834715	81834805	LINE	Lx9	L1	chr7Lx981834709	ProperStrand	1	1	-inf
chr16	23110392	23110453	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr16	24984418	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	1	-3.3801
chr14	75847936	75848013	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr11	69667877	69669761	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	3	-6.3213
chr4	132352442	132352504	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-6.5231
chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	15	chr16	23110837	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-7.0001
chr15	102408807	102408823	protein_coding	Atf7	intron	ENSMUSG00000052414	NonProperStrand	3	chr9	15313801	15313840	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-9.6947
chr7	88644216	88644296	LINE	L1MEf	L1	chr7L1MEf88644144	NonProperStrand	1	chr7	88644373	88644463	SINE	B1F1	Alu	chr7B1F188644300	ProperStrand	1	1	-inf
chr9	117579777	117579857	Low_complexity	CT-rich	Low_complexity	chr9CT-rich117579743	NonProperStrand	1	chr9	117579571	117579661	SINE	B4A	B4	chr9B4A117579497	ProperStrand	1	1	-inf
chr9	50751308	50751324	protein_coding	Sik2	intron	ENSMUSG00000037112	ProperStrand	3	chr19	50387137	50387158	protein_coding	Sorcs1	intron	ENSMUSG00000043531	NonProperStrand	3	1	-19.6922
chr5	146260994	146261018	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr3	101972709	101972727	protein_coding	Vangl1	intron	ENSMUSG00000027860	ProperStrand	1	1	-inf
chr5	97935266	97935282	lincRNA	4930467D21Rik	intron	ENSMUSG00000085273	NonProperStrand	2	chr4	145745108	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-15.6422
chr18	10052131	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr2	5379274	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	2	-4.8097
chr11	94943818	94944620	LTR	ORR1E	MaLR	chr11ORR1E94944268	ProperStrand	5	chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.6839
chr3	19940554	19940644	LTR	RLTR21	ERVK	chr3RLTR2119939726	NonProperStrand	1	chr12	67663018	67663098	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr6	115807995	115808075	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr3	108554350	108554440	protein_coding	Aknad1	intron	ENSMUSG00000049565	NonProperStrand	8	1	-10.0765
chr17	39847433	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	mmu-miR-3473b	0	17	miRNA	mmu-miR-3473b	.	mmu-miR-3473b	ProperStrand	8	1	-3.3062
chr7	100629868	100629884	LINE	Lx7	L1	chr7Lx7100629435	ProperStrand	7	chr19	8888660	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-7.9172
chr17	39846392	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	17776748	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	2	-5.0888
chr5	121205007	121205104	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-6.8530
chr6	91256403	91256923	DNA	RCHARR1	MER1_type	chr6RCHARR191256126	NonProperStrand	2	chr7	141984950	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-16.2286
chr3	96176366	96176386	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr5	116469280	116469300	protein_coding	Prkab1	intron	ENSMUSG00000029513	NonProperStrand	1	1	-inf
chr5	121205117	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr4	145745108	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-4.8896
chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	10	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-5.7168
chr4	132309997	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr1	134423123	134424028	protein_coding	Cntn2	intron	ENSMUSG00000053024	NonProperStrand	3	1	-8.6506
chr15	79671002	79671246	SINE	B1_Mus1	Alu	chr15B1_Mus179671116	NonProperStrand	1	chr15	79670883	79670973	SINE	RSINE1	B4	chr15RSINE179670892	NonProperStrand	1	1	-inf
chr19	45453486	45453566	protein_coding	Btrc	intron	ENSMUSG00000025217	NonProperStrand	2	chr11	73083441	73083531	protein_coding	Trpv3	intron	ENSMUSG00000043029	NonProperStrand	1	1	-inf
chr1	97645988	97646078	LINE	Lx7	L1	chr1Lx797645983	NonProperStrand	1	chr1	97645883	97645963	LTR	RLTR23	ERV1	chr1RLTR2397645855	ProperStrand	1	1	-inf
chr17	39846741	39846765	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	149050722	149052972	protein_coding	Mtus2	intron	ENSMUSG00000029651	NonProperStrand	6	1	-4.3847
chr5	121205007	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr7	141984950	141985436	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-5.4544
chr5	114851994	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr7	3297592	3297615	protein_coding	Myadm	exon	ENSMUSG00000068566	ProperStrand	1	1	-inf
chr14	40939735	40939825	LTR	RLTR6-int	ERV1	chr14RLTR6-int40938749	ProperStrand	2	chr9	123461933	123462013	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	2	-inf
chr4	120553008	120553957	protein_coding	Rims3	intron	ENSMUSG00000032890	ProperStrand	10	chr16	23110910	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.9306
chr7	88916767	88916847	LINE	L1Md_T	L1	chr7L1Md_T88916749	ProperStrand	1	chr7	88916441	88916531	LINE	Lx4A	L1	chr7Lx4A88916104	ProperStrand	1	1	-inf
chr2	94374646	94375086	SINE	MIRc	MIR	chr2MIRc94374593	ProperStrand	1	chr9	123462051	123462078	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr13	44869602	44869701	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr16	23111379	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	2	-5.2615
chr8	119905988	119906005	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	13	chr6	119244063	119244080	protein_coding	Cacna2d4	intron	ENSMUSG00000041460	NonProperStrand	1	1	-inf
chr8	84772117	84772219	LTR	LTR37B	ERV1	chr8LTR37B84772094	NonProperStrand	2	chrX	12076891	12076908	SINE	B3	B2	chrXB312076728	ProperStrand	2	1	-21.5566
chr4	103193787	103193877	LINE	L2b	L2	chr4L2b103193747	NonProperStrand	1	chr4	103194157	103194237	SINE	B3A	B2	chr4B3A103194103	ProperStrand	1	1	-inf
chr17	39846650	39846678	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr15	74813738	74813754	protein_coding	Ly6i	utr5	ENSMUSG00000022586	NonProperStrand	1	1	-inf
chr9	115742529	115742619	LTR	MTD	MaLR	chr9MTD115742275	ProperStrand	1	chr9	115742160	115742240	LTR	ORR1D2	MaLR	chr9ORR1D2115742136	NonProperStrand	1	1	-inf
chr19	26874736	26874826	processed_transcript	4931403E22Rik	.	ENSMUSG00000093772	ProperStrand	4	chr15	10603738	10603818	protein_coding	Rai14	intron	ENSMUSG00000022246	NonProperStrand	2	1	-19.9239
chr3	56183309	56183327	LINE	L1Md_A	L1	chr3L1Md_A56183116	ProperStrand	5	chr17	39843377	39843467	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	1	-11.1246
chr6	91121946	91122036	protein_coding-noncoding	Hdac11	utr5	ENSMUSG00000034245	ProperStrand	1	chr6	91121551	91121631	protein_coding	Hdac11	intron	ENSMUSG00000034245	ProperStrand	1	1	-inf
chr17	39847056	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr5	146260994	146261228	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	17	-7.6962
chr17	39847531	39847547	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	91995322	91995384	protein_coding	Phf21a	intron	ENSMUSG00000058318	NonProperStrand	6	1	-3.8783
chr7	86637103	86637183	LTR	MTC	MaLR	chr7MTC86637085	ProperStrand	1	chr7	86636784	86636874	SINE	B2_Mm2	B2	chr7B2_Mm286636682	NonProperStrand	1	1	-inf
chr11	39649728	39649818	LINE	L1MD	L1	chr11L1MD39649590	ProperStrand	1	chr1	85213564	85213644	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	ProperStrand	1	1	-inf
chr10	23785349	23785397	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	1	-3.7257
chr8	44690361	44690441	LTR	MT2A	ERVL	chr8MT2A44690382	NonProperStrand	1	chr8	44689934	44690024	LTR	RMER15	ERVL	chr8RMER1544689748	NonProperStrand	1	1	-inf
chr10	79894985	79895065	protein_coding	Tcf3	intron	ENSMUSG00000020167	ProperStrand	2	chr17	81985031	81985121	protein_coding	Slc8a1	intron	ENSMUSG00000054640	ProperStrand	5	1	-19.5000
chrX	136139277	136139294	protein_coding	Rnf128	intron	ENSMUSG00000031438	NonProperStrand	1	chr2	145373461	145373479	protein_coding	Slc24a3	intron	ENSMUSG00000063873	NonProperStrand	3	1	-inf
chr2	90395146	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chrX	131106120	131106137	protein_coding	Btk	intron	ENSMUSG00000031264	ProperStrand	3	1	-7.8617
chr1	5170738	5170754	LINE	Lx4B	L1	chr1Lx4B5169206	NonProperStrand	11	chr17	39846963	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-3.1848
chr17	39848705	39848823	LINE	L1Md_T	L1	chr17L1Md_T39848464	NonProperStrand	29	chr15	50831233	50831249	Simple_repeat	(CAAA)n	Simple_repeat	chr15(CAAA)n50831229	NonProperStrand	1	1	-inf
chr10	76609266	76609326	protein_coding	Col18a1	intron	ENSMUSG00000001435	ProperStrand	12	chr2	130276254	130276307	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-7.2501
chr11	109011747	109011861	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	34440790	34440923	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	13	-7.0954
chr17	39847187	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr14	32191965	32192021	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	1	-3.1576
chr5	39632486	39632566	LINE	L1_Mus1	L1	chr5L1_Mus139632378	NonProperStrand	1	chr5	39632294	39632384	Other	RMER1A	Other	chr5RMER1A39631619	NonProperStrand	1	1	-inf
chr10	23785347	23785398	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr3	7966037	7966056	LINE	Lx7	L1	chr3Lx77965687	ProperStrand	1	1	-inf
chr11	23013143	23013223	SINE	B2_Mm2	B2	chr11B2_Mm223013100	NonProperStrand	1	chr11	23013361	23013451	SINE	RSINE1	B4	chr11RSINE123013337	NonProperStrand	1	1	-inf
chr1	22805682	22805698	protein_coding	Rims1	intron	ENSMUSG00000041670	NonProperStrand	3	chr16	23110835	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr11	10436970	10437050	LINE	Lx3C	L1	chr11Lx3C10435855	NonProperStrand	1	chr12	20709708	20709798	LTR	RLTR4_MM-int	ERV1	chr12RLTR4_MM-int20709608	NonProperStrand	1	1	-inf
chr9	120130421	120130485	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr10	81022466	81025350	protein_coding	Aes	intron	ENSMUSG00000054452	ProperStrand	1	1	-inf
chr11	78602222	78602312	SINE	B2_Mm2	B2	chr11B2_Mm278602108	ProperStrand	1	chr11	78602347	78602427	SINE	B3A	B2	chr11B3A78602304	ProperStrand	1	1	-inf
chr17	39846655	39846744	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	31076708	31076788	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	7	1	-4.0682
chr7	122768917	122768934	protein_coding	Sox6	intron	ENSMUSG00000051910	ProperStrand	16	chr2	158359833	158359889	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-7.9979
chr4	132309555	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	10	-5.8149
chr9	35503189	35503279	LTR	ETnERV3-int	ERVK	chr9ETnERV3-int35503191	NonProperStrand	1	chr9	35503511	35503591	LTR	ETnERV3-int	ERVK	chr9ETnERV3-int35503299	NonProperStrand	1	1	-inf
chr5	146261171	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr4	136547349	136547439	protein_coding	Zbtb40	intron	ENSMUSG00000060862	NonProperStrand	1	1	-inf
chrX	123103876	123103894	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	8	chr16	23110802	23110933	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-5.6991
chr10	128458460	128458519	LINE	L1Md_F2	L1	chr10L1Md_F2128452461	ProperStrand	3	chr17	39847867	39848021	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	2	-9.7222
chr5	110692088	110692168	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	chr6	97162819	97162909	protein_coding	Arl6ip5	intron	ENSMUSG00000035199	NonProperStrand	7	1	-12.3055
chrX	129110503	129110583	LINE	L1Md_F3	L1	chrXL1Md_F3129110497	NonProperStrand	1	chr15	67104844	67104934	LTR	MTE2b	MaLR	chr15MTE2b67104817	NonProperStrand	1	1	-inf
chr9	63480677	63480757	protein_coding	Aagab	intron	ENSMUSG00000037257	ProperStrand	1	chr9	63325070	63325160	protein_coding	Iqch	intron	ENSMUSG00000037801	ProperStrand	4	1	-inf
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	10	chr15	34440824	34440914	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-8.0993
chr11	109799360	109799440	antisense	Gm11697	.	ENSMUSG00000085629	ProperStrand	1	chr11	109799951	109800041	protein_coding	Abca8b	intron	ENSMUSG00000020620	NonProperStrand	1	1	-inf
chr17	4082531	4082621	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	chr17	20255245	20255325	pseudogene	Vmn2r-ps126	.	ENSMUSG00000093401	ProperStrand	2	1	-16.4041
chr19	4238425	4238515	SINE	B2_Mm1a	B2	chr19B2_Mm1a4238363	NonProperStrand	1	chr19	4238289	4238369	SINE	B3	B2	chr19B34238232	ProperStrand	1	1	-inf
chr15	80078555	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr2	130276254	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-4.1962
chr15	90669536	90669616	LTR	RMER10B	ERVL	chr15RMER10B90669538	NonProperStrand	1	chr15	90669194	90669284	Other	RMER1C	Other	chr15RMER1C90668985	NonProperStrand	1	1	-inf
chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-6.0939
chr10	40258543	40258633	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	23	chr2	90395158	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-3.5774
chr1	91746573	91746663	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	chr16	77375509	77375589	protein_coding	2810055G20Rik	intron	ENSMUSG00000090386	NonProperStrand	4	1	-15.4039
chr11	109011829	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	69085228	69085272	SINE	RSINE1	B4	chr3RSINE169085236	ProperStrand	4	1	-5.5999
chr14	75847946	75848016	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr15	86194986	86195021	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-7.2078
chr13	35625545	35625635	LINE	Lx8	L1	chr13Lx835624859	NonProperStrand	1	chr13	35625790	35625870	SINE	B3A	B2	chr13B3A35625740	NonProperStrand	1	1	-inf
chr5	31562166	31562256	protein_coding	Ift172	intron	ENSMUSG00000038564	NonProperStrand	1	chr5	31562268	31562348	protein_coding	Ift172	intron	ENSMUSG00000038564	ProperStrand	1	1	-inf
chr1	122357187	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr19	5609827	5609844	protein_coding	Kat5	intron	ENSMUSG00000024926	ProperStrand	3	1	-11.7492
chr17	24719729	24719809	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr8	13876096	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-4.3633
chr10	4596258	4596338	LINE	L1VL4	L1	chr10L1VL44594169	NonProperStrand	1	chr17	80927168	80927258	protein_coding	Cdkl4	intron	ENSMUSG00000033966	NonProperStrand	2	1	-inf
mmu-miR-3473b	0	18	miRNA	mmu-miR-3473b	.	mmu-miR-3473b	ProperStrand	8	chr2	90395146	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-5.6660
chr1	122357202	122357226	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-4.2801
chr13	118317393	118317483	LINE	Lx3_Mus	L1	chr13Lx3_Mus118317248	NonProperStrand	1	chr13	118317014	118317094	SINE	ID_B1	B4	chr13ID_B1118317025	ProperStrand	1	1	-inf
chr17	39845243	39845294	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	201	chr14	54898789	54898890	LTR	RLTR9A	ERVK	chr14RLTR9A54898718	ProperStrand	1	1	-inf
chr1	97715695	97715785	LINE	L1Md_F2	L1	chr1L1Md_F297714553	NonProperStrand	1	chr1	97715881	97715961	LINE	L1Md_F2	L1	chr1L1Md_F297715720	NonProperStrand	1	1	-inf
chr17	39847082	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	120042232	120042248	protein_coding	Pla2g4e	intron	ENSMUSG00000050211	NonProperStrand	8	2	-9.0178
chr5	135301802	135301892	SINE	B1_Mur4	Alu	chr5B1_Mur4135301760	ProperStrand	1	chr5	100767272	100767352	pseudogene	Gm8091	.	ENSMUSG00000085915	ProperStrand	2	1	-inf
chr12	53712245	53712335	LTR	ORR1A2-int	MaLR	chr12ORR1A2-int53712081	NonProperStrand	1	chr12	53712456	53712536	LTR	ORR1A2-int	MaLR	chr12ORR1A2-int53712465	NonProperStrand	1	1	-inf
chr1	9210467	9210483	protein_coding	Sntg1	intron	ENSMUSG00000025909	ProperStrand	9	chr17	24720823	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-7.4635
mmu-miR-6240	1	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr8	70895765	70895874	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-3.1934
chr14	50985013	50985093	LINE	Lx5	L1	chr14Lx550984828	NonProperStrand	1	chr14	50985458	50985548	LINE	Lx7	L1	chr14Lx750985285	ProperStrand	1	1	-inf
chr18	90372172	90372262	LINE	L1Md_F3	L1	chr18L1Md_F390370787	ProperStrand	1	chr18	84353845	84353925	protein_coding	Zfp407	intron	ENSMUSG00000048410	NonProperStrand	5	1	-inf
chr2	59234107	59234176	LINE	L1MDa	L1	chr2L1MDa59233993	NonProperStrand	1	chr9	123461931	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr16	35981617	35981645	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr12	105031235	105031335	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-6.1078
chr17	39847605	39847658	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	21870397	21871446	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	NonProperStrand	4	1	-4.7422
chr9	21826481	21826534	protein_coding	Elavl3	intron	ENSMUSG00000003410	ProperStrand	2	chr5	114851994	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-10.8185
chr5	105552840	105552920	protein_coding	Gbp4	intron	ENSMUSG00000079363	NonProperStrand	1	chr5	109866948	109867038	protein_coding	Vmn2r17	intron	ENSMUSG00000091879	NonProperStrand	1	1	-inf
chr1	32604170	32604250	protein_coding	Khdrbs2	intron	ENSMUSG00000026058	NonProperStrand	4	chr1	32604032	32604122	protein_coding	Gm5415	utr5	ENSMUSG00000091318	ProperStrand	2	2	-inf
chr3	69085231	69085280	SINE	RSINE1	B4	chr3RSINE169085236	ProperStrand	4	chr13	97190551	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.1245
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	chr19	8888597	8888673	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-6.3300
chr17	39847863	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	56996035	56996052	protein_coding	Satb2	intron	ENSMUSG00000038331	NonProperStrand	3	1	-5.4090
chr11	109011747	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	191121061	191121108	protein_coding	Kcnk2	intron	ENSMUSG00000037624	NonProperStrand	1	1	-inf
chr8	70895813	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr8	12386714	12386734	protein_coding	Gm5607	intron	ENSMUSG00000047935	ProperStrand	1	1	-inf
chr5	53998711	53998727	protein_coding	Rbpj	intron	ENSMUSG00000039191	ProperStrand	6	chr6	53396423	53396439	protein_coding	9430076C15Rik	intron	ENSMUSG00000090982	NonProperStrand	3	1	-18.0454
chr5	114852004	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr4	145745109	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-4.7008
chr13	57508781	57508799	LINE	L1MA4A	L1	chr13L1MA4A57508375	NonProperStrand	1	chr9	123461953	123462004	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr8	100992429	100992509	Low_complexity	CT-rich	Low_complexity	chr8CT-rich100992413	ProperStrand	1	chr8	100992523	100992615	SINE	B1_Mur2	Alu	chr8B1_Mur2100992515	NonProperStrand	1	1	-inf
chr13	112578211	112578308	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr4	141628429	141629085	protein_coding	Tmem51	intron	ENSMUSG00000040616	ProperStrand	1	1	-inf
chr17	39847039	39847144	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr7	52884281	52884298	protein_coding	Rasip1	exon	ENSMUSG00000044562	NonProperStrand	1	1	-inf
chr6	82042911	82042927	protein_coding	Fam176a	utr3	ENSMUSG00000035104	ProperStrand	4	chr5	107907373	107907473	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-10.7258
chr5	22789792	22789882	LTR	MTEa	MaLR	chr5MTEa22789732	NonProperStrand	1	chr5	22790357	22790437	SINE	B1F	Alu	chr5B1F22790319	NonProperStrand	1	1	-inf
chr2	25335584	25335674	LTR	RMER15	ERVL	chr2RMER1525335565	NonProperStrand	1	chr8	117358854	117358934	protein_coding	Wwox	intron	ENSMUSG00000004637	NonProperStrand	19	1	-inf
chr2	158625290	158625307	protein_coding	Dhx35	intron	ENSMUSG00000027655	NonProperStrand	6	chr5	114852015	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-8.1224
chr1	93438302	93438339	protein_coding	Asb1	intron	ENSMUSG00000026311	NonProperStrand	1	chr16	23110837	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr11	69667864	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr8	126944847	126944967	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	3	-5.3509
chr7	110046441	110046502	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr7	109520119	109520242	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	3	-7.1890
chr3	55738411	55738428	protein_coding	Nbea	intron	ENSMUSG00000027799	NonProperStrand	5	chr13	97190553	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-7.6184
chr17	39847611	39847674	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	125283901	125283963	protein_coding	Dnahc10	intron	ENSMUSG00000038011	NonProperStrand	1	1	-inf
chr11	6528057	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	4	-6.9625
chr2	5379277	5379344	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr19	8888543	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	6	-3.5980
chr10	115492374	115492393	protein_coding	Ptprr	intron	ENSMUSG00000020151	ProperStrand	3	chr2	32963313	32963359	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-10.1174
chr11	109011796	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	142886677	142886694	protein_coding	Foxk1	intron	ENSMUSG00000056493	NonProperStrand	14	1	-3.0480
chr13	29023013	29023103	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n29022929	ProperStrand	1	chr11	101158756	101158836	protein_coding	Becn1	intron	ENSMUSG00000035086	ProperStrand	1	1	-inf
chr13	44869581	44869641	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr4	153722193	153722209	protein_coding	Prdm16	exon	ENSMUSG00000039410	ProperStrand	8	1	-6.6679
chr12	78350926	78351016	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr4	132309952	132310032	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-4.1569
chr2	90395139	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr12	16706121	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	2	-5.8769
chr17	39847662	39847681	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr13	105445094	105445110	protein_coding	Cwc27	intron	ENSMUSG00000021715	NonProperStrand	1	1	-inf
chr16	32225325	32225405	LINE	Lx8	L1	chr16Lx832225275	NonProperStrand	1	chr16	32225179	32225269	SINE	B3	B2	chr16B332225056	NonProperStrand	1	1	-inf
chr13	84039281	84039371	LINE	L1_Mus3	L1	chr13L1_Mus384039280	NonProperStrand	1	chr13	84039601	84039681	LTR	RLTR10E	ERVK	chr13RLTR10E84039444	ProperStrand	1	1	-inf
chr11	109011746	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	173053024	173053043	protein_coding	1700009P17Rik	utr5	ENSMUSG00000026649	ProperStrand	5	2	-8.7729
chrX	4136307	4136355	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	chr16	23110768	23110800	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-7.2184
chr8	57958351	57958367	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	1	-8.2526
chr11	55482722	55482772	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr16	35981611	35981648	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-5.0951
chr15	52292151	52292241	LTR	ORR1B1	MaLR	chr15ORR1B152292086	NonProperStrand	1	chr9	19657883	19657963	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	22	1	-inf
chr2	126341147	126341237	LINE	Lx6	L1	chr2Lx6126341170	ProperStrand	1	chr2	126340682	126340762	LINE	Lx9	L1	chr2Lx9126340686	NonProperStrand	1	1	-inf
chr18	35554565	35557229	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	5	-3.8041
chr8	87959216	87959296	LTR	RMER17A2	ERVK	chr8RMER17A287958665	NonProperStrand	1	chr8	87959278	87959368	SINE	B1_Mus1	Alu	chr8B1_Mus187959293	ProperStrand	1	1	-inf
chr13	100463399	100463479	LINE	L1MA4A	L1	chr13L1MA4A100463321	ProperStrand	1	chr13	100462868	100462958	LTR	RLTR20A2	ERVK	chr13RLTR20A2100462658	NonProperStrand	1	1	-inf
chr2	159173786	159173876	LINE	L1Md_T	L1	chr2L1Md_T159171855	NonProperStrand	1	chr2	167430533	167430613	processed_transcript	Gm11476	.	ENSMUSG00000085596	ProperStrand	1	1	-inf
chr7	141448814	141448888	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr18	35557030	35557104	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-4.8005
chr9	120130413	120130504	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr2	146299472	146299492	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	NonProperStrand	4	1	-10.5849
chr6	46481289	46481379	protein_coding	Cntnap2	intron	ENSMUSG00000039419	ProperStrand	26	chr1	85213589	85213669	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	NonProperStrand	8	1	-12.7350
chr7	5409549	5409629	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	2	chr1	139826374	139826464	protein_coding	A130050O07Rik	utr3	ENSMUSG00000051480	ProperStrand	1	1	-inf
chr13	51648211	51648277	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	chr15	80078499	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	1	-9.2715
chr12	78350926	78350987	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr5	107905190	107905247	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-6.8403
chr14	75847946	75848034	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr7	80351041	80351058	SINE	ID4_	ID	chr7ID4_80351015	NonProperStrand	1	1	-inf
chr7	141448747	141451066	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	3	chr7	141447952	141448726	SINE	PB1D10	Alu	chr7PB1D10141447926	NonProperStrand	2	2	-inf
chr9	19657999	19658079	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	chr14	72988874	72988964	protein_coding	Fndc3a	intron	ENSMUSG00000033487	NonProperStrand	1	1	-inf
chr11	109011749	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	23454706	23454724	LINE	L1_Rod	L1	chr15L1_Rod23454645	ProperStrand	6	1	-4.7173
chr9	120130422	120130448	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr13	89731467	89731483	protein_coding	Hapln1	intron	ENSMUSG00000021613	ProperStrand	2	1	-12.3739
chrX	151470836	151470852	LINE	L1Md_A	L1	chrXL1Md_A151470619	ProperStrand	1	chr15	95948878	95948968	LTR	RMER17C	ERVK	chr15RMER17C95948759	NonProperStrand	1	1	-inf
chr6	143065229	143065249	DNA	Cheshire	MER1_type	chr6Cheshire143065152	ProperStrand	1	chr3	96724299	96724383	protein_coding	Gja8	intron	ENSMUSG00000049908	ProperStrand	8	1	-inf
chr16	23110770	23110801	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	1	-6.8667
chr16	18240715	18240814	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr2	130276271	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	2	-9.3258
chr7	47188544	47188624	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	7	chr8	59950685	59950775	protein_coding	Scrg1	intron	ENSMUSG00000031610	ProperStrand	2	1	-18.7768
chrX	92861077	92861157	LINE	Lx7	L1	chrXLx792860882	ProperStrand	1	chrX	92860803	92860893	LTR	MTA_Mm	MaLR	chrXMTA_Mm92860478	NonProperStrand	1	1	-inf
chr16	66615323	66615403	LTR	MLT1A	MaLR	chr16MLT1A66615310	NonProperStrand	1	chr16	66615618	66615708	LTR	MTE2b	MaLR	chr16MTE2b66615526	ProperStrand	1	1	-inf
chr10	17124521	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr5	146261160	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-5.0819
chr17	39846352	39846370	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	53860733	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	5	1	-4.7701
chr4	102814054	102814144	protein_coding-noncoding	Mier1	utr5	ENSMUSG00000028522	NonProperStrand	1	chr4	104404411	104404491	protein_coding	Dab1	intron	ENSMUSG00000028519	NonProperStrand	10	1	-inf
chr12	70334749	70334839	LTR	ORR1C2	MaLR	chr12ORR1C270334770	NonProperStrand	1	chr12	70334574	70334654	LTR	RMER15-int	ERVL	chr12RMER15-int70334491	ProperStrand	1	1	-inf
chr1	122357170	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr6	131380327	131380406	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	1	-7.0886
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	111070678	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	2	-4.7604
chr17	77910199	77910289	LTR	MYSERV16_I-int	ERVK	chr17MYSERV16_I-int77909634	NonProperStrand	1	chr17	77910688	77910768	LTR	RLTR20A	ERVK	chr17RLTR20A77910352	NonProperStrand	1	1	-inf
chr11	109011745	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	87238364	87238412	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	9	-8.9904
chr2	5379288	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr7	35048095	35048111	protein_coding	4931406P16Rik	intron	ENSMUSG00000066571	NonProperStrand	3	1	-8.3841
chr17	39847180	39847198	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr17	7952210	7952238	protein_coding	Fndc1	intron	ENSMUSG00000071984	ProperStrand	4	1	-6.8874
chr19	61174892	61174972	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	2	chr4	44867922	44868012	protein_coding	Zcchc7	intron	ENSMUSG00000035649	NonProperStrand	1	1	-inf
chr7	67515699	67515715	LTR	MER31A	ERV1	chr7MER31A67515564	ProperStrand	1	chr16	8721293	8721337	protein_coding	Usp7	intron	ENSMUSG00000022710	NonProperStrand	2	1	-inf
chr11	69669637	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr9	119102643	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	7	1	-7.8231
chr17	51556646	51556736	LTR	LTR16E1	ERVL	chr17LTR16E151556531	NonProperStrand	1	chr17	51556887	51556967	SINE	PB1D10	Alu	chr17PB1D1051556863	ProperStrand	1	1	-inf
chr10	95396369	95396459	LTR	IAPLTR2b	ERVK	chr10IAPLTR2b95396229	ProperStrand	1	chr10	95396540	95396620	LTR	RLTR20A2	ERVK	chr10RLTR20A295396530	ProperStrand	1	1	-inf
chr11	109011797	109011840	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	89545240	89545257	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	6	1	-4.7173
chr11	109011657	109011862	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	30	-13.3438
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	75748015	75748033	protein_coding	Pycrl	intron	ENSMUSG00000022571	NonProperStrand	8	1	-4.1268
chr4	60042002	60042092	LINE	L1Md_F2	L1	chr4L1Md_F260040782	ProperStrand	1	chr12	67661132	67661212	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr13	3630519	3630609	DNA	RMER30	MER1_type	chr13RMER303630479	ProperStrand	1	chr13	3630681	3630761	LTR	ORR1D1	MaLR	chr13ORR1D13630662	ProperStrand	1	1	-inf
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr9	15313880	15313932	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-4.4466
chr5	107905176	107905308	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	chr16	33726448	33726465	protein_coding	Heg1	exon	ENSMUSG00000075254	NonProperStrand	6	1	-9.8121
chr13	79308371	79308451	LINE	Lx6	L1	chr13Lx679305241	NonProperStrand	1	chr13	79308637	79308727	LTR	MLT1D	MaLR	chr13MLT1D79308546	ProperStrand	1	1	-inf
chr17	24720850	24720907	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr2	155822994	155823205	protein_coding	6430550D23Rik	intron	ENSMUSG00000074646	ProperStrand	2	1	-11.0283
chr17	39847123	39847254	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	63179007	63179135	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	2	-5.7111
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	51142539	51142573	LINE	Lx3_Mus	L1	chr19Lx3_Mus51141674	ProperStrand	1	1	-inf
chr15	76179787	76179877	protein_coding-noncoding	Sharpin	utr3	ENSMUSG00000022552	ProperStrand	8	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	1	-13.2715
chr3	93146117	93146207	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int93146025	NonProperStrand	1	chr3	93146506	93146586	LTR	RLTR12B	ERVK	chr3RLTR12B93146284	NonProperStrand	1	1	-inf
chr11	76587487	76587577	DNA	RCHARR1	MER1_type	chr11RCHARR176587297	NonProperStrand	5	chr11	76616553	76616633	protein_coding	Cpd	intron	ENSMUSG00000020841	ProperStrand	6	5	-inf
chr17	39846815	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	91990038	91990137	protein_coding	Iqca	intron	ENSMUSG00000026301	ProperStrand	10	1	-3.3657
chr15	85177751	85177773	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	chr16	23110835	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.1629
chr17	39847278	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	117077242	117077349	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-3.3109
chr9	88553233	88553333	lincRNA	Gm17683	intron	ENSMUSG00000091564	ProperStrand	7	chr9	123462082	123462101	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-5.2735
chr11	118774461	118774481	LINE	HAL1	L1	chr11HAL1118774205	NonProperStrand	3	chr17	39847958	39847974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-5.4090
chr9	115700778	115700868	LTR	RLTR45-int	ERVK	chr9RLTR45-int115700483	ProperStrand	1	chr9	115879803	115879883	protein_coding	Gadl1	intron	ENSMUSG00000056880	ProperStrand	2	1	-inf
chr11	104945903	104945983	protein_coding	Efcab3	intron	ENSMUSG00000020690	ProperStrand	1	chr11	105677998	105678088	protein_coding	Tanc2	intron	ENSMUSG00000053580	NonProperStrand	4	1	-inf
chr9	106976783	106976873	protein_coding	Dock3	intron	ENSMUSG00000039716	NonProperStrand	3	chr9	109527270	109527350	protein_coding	Fbxw24	intron	ENSMUSG00000062275	NonProperStrand	1	1	-inf
chr18	68548153	68548233	LINE	L1VL4	L1	chr18L1VL468547518	NonProperStrand	1	chr18	68548548	68548638	Simple_repeat	(CA)n	Simple_repeat	chr18(CA)n68548529	ProperStrand	1	1	-inf
chr7	110046442	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr5	107907358	107907476	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-4.3731
chr17	39847611	39847635	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	51737835	51737886	SINE	B3	B2	chr11B351737669	NonProperStrand	6	1	-3.8783
chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	7	chr16	11254035	11254071	protein_coding	Gspt1	utr5	ENSMUSG00000062203	NonProperStrand	1	1	-inf
chr11	45199543	45199633	LINE	Lx9	L1	chr11Lx945199342	NonProperStrand	1	chr11	45199773	45199853	LTR	ORR1A4	MaLR	chr11ORR1A445199639	NonProperStrand	1	1	-inf
chr16	58822377	58822456	DNA	Charlie1a	MER1_type	chr16Charlie1a58822394	NonProperStrand	1	chr16	81540461	81540551	protein_coding	Ncam2	intron	ENSMUSG00000022762	ProperStrand	5	1	-inf
chr17	39846603	39846641	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr12	19388165	19388182	SINE	B3	B2	chr12B319388035	NonProperStrand	5	1	-4.7701
chr5	146261244	146261284	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr2	6838417	6838433	protein_coding	Celf2	intron	ENSMUSG00000002107	NonProperStrand	6	1	-12.4338
chr11	6528087	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr3	123507988	123508057	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	2	-3.1847
chr9	4547733	4547753	protein_coding	Gria4	intron	ENSMUSG00000025892	NonProperStrand	4	chr13	44869930	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-8.1902
chr5	146261180	146261221	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr5	30920984	30921032	protein_coding	Kcnk3	intron	ENSMUSG00000049265	ProperStrand	4	1	-8.1425
chr3	9548345	9548425	protein_coding	Zfp704	intron	ENSMUSG00000040209	NonProperStrand	4	chr16	11751842	11751932	protein_coding	Snx29	intron	ENSMUSG00000071669	NonProperStrand	4	1	-18.2441
chr2	5379274	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr13	46767580	46767642	protein_coding	C78339	intron	ENSMUSG00000069237	NonProperStrand	10	1	-5.7168
chr19	24942235	24942267	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr2	130276274	130276314	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-6.3134
chr2	55766689	55766779	LINE	Lx6	L1	chr2Lx655766677	NonProperStrand	1	chr2	55767126	55767206	LINE	Lx6	L1	chr2Lx655766847	NonProperStrand	1	1	-inf
chr17	39847288	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr15	12148771	12148832	protein_coding	Mtmr12	intron	ENSMUSG00000039458	ProperStrand	2	1	-8.6616
chr17	39846462	39846484	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr1	153235044	153235167	protein_coding	1200016B10Rik	intron	ENSMUSG00000052748	NonProperStrand	3	1	-11.8956
chr18	74219177	74219196	protein_coding	Mapk4	intron	ENSMUSG00000024558	NonProperStrand	2	chr9	123462115	123462142	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr16	35981617	35981634	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr17	84770035	84770080	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	7	1	-10.3634
chr17	39847170	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr17	28167025	28167042	protein_coding	Anks1	intron	ENSMUSG00000024219	ProperStrand	5	1	-6.3853
chr4	147465904	147465984	LTR	ORR1B2	MaLR	chr4ORR1B2147465777	NonProperStrand	1	chr4	147465605	147465695	LTR	ORR1D1	MaLR	chr4ORR1D1147465469	NonProperStrand	1	1	-inf
chr17	39846759	39846839	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr18	77778542	77778632	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	6	1	-4.3847
chr1	5170738	5170754	LINE	Lx4B	L1	chr1Lx4B5169206	NonProperStrand	11	chr4	145745108	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-11.6382
chr5	77095039	77095129	protein_coding	C530008M17Rik	intron	ENSMUSG00000036377	NonProperStrand	3	chr16	46154484	46154543	protein_coding	Gm4737	exon	ENSMUSG00000048087	ProperStrand	1	1	-inf
chr15	3280457	3280474	protein_coding	Ghr	intron	ENSMUSG00000055737	NonProperStrand	1	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-inf
chr8	47900829	47900845	protein_coding	Irf2	intron	ENSMUSG00000031627	NonProperStrand	1	chr15	91888156	91888172	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	7	1	-inf
chr17	39847802	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr13	97162908	97162924	protein_coding	Poc5	intron	ENSMUSG00000021671	ProperStrand	2	1	-6.4812
chr2	126675062	126675081	protein_coding	Trpm7	intron	ENSMUSG00000027365	NonProperStrand	2	chr5	121205023	121205106	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-11.0157
chr16	23110797	23111374	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr16	23111379	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	3	-5.9659
chr12	41795057	41795147	protein_coding-noncoding	Immp2l	utr5	ENSMUSG00000056899	ProperStrand	1	chr12	41794893	41794973	protein_coding	Immp2l	utr5	ENSMUSG00000056899	ProperStrand	5	1	-inf
chr11	8447685	8447765	protein_coding-noncoding	Tns3	utr3	ENSMUSG00000020422	NonProperStrand	2	chr11	8427558	8427648	protein_coding	Tns3	intron	ENSMUSG00000020422	NonProperStrand	4	1	-19.9190
chr19	59859180	59859259	LTR	MTE2a	MaLR	chr19MTE2a59858944	ProperStrand	1	chr2	139664473	139664563	protein_coding	Tasp1	intron	ENSMUSG00000039033	NonProperStrand	5	1	-inf
chr2	130590479	130590495	protein_coding	4930402H24Rik	intron	ENSMUSG00000027309	ProperStrand	4	chr2	4717862	4717880	protein_coding	Bend7	intron	ENSMUSG00000048186	ProperStrand	1	1	-inf
chr11	109011656	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	106501242	106501329	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	10	-4.4191
chr13	112506224	112506261	protein_coding	Mier3	utr3	ENSMUSG00000032727	ProperStrand	1	chr7	79297107	79297153	protein_coding	Mctp2	intron	ENSMUSG00000032776	NonProperStrand	9	1	-inf
chr1	91366486	91366502	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-5.6414
chr14	75847957	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr2	158359798	158359919	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-4.0903
chr16	11144069	11144149	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chr2	5405090	5405180	protein_coding	Camk1d	intron	ENSMUSG00000039145	NonProperStrand	10	1	-11.1040
chr11	101174515	101174595	SINE	ID_B1	B4	chr11ID_B1101174462	ProperStrand	1	chr11	101182370	101182460	protein_coding	Psme3	intron	ENSMUSG00000078652	ProperStrand	1	1	-inf
chr17	75824442	75824462	LINE	L1Md_T	L1	chr17L1Md_T75823479	NonProperStrand	1	chr2	90395147	90395167	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr1	74159893	74159973	protein_coding	Tns1	intron	ENSMUSG00000055322	NonProperStrand	8	chr7	109828788	109828878	protein_coding	Trim68	exon	ENSMUSG00000073968	NonProperStrand	3	2	-inf
chr17	39847473	39847937	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	35162560	35162698	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	8	-4.2756
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	16	chr9	123462058	123462113	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-3.6260
chr17	39847080	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr8	126944846	126944982	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	6	-5.4757
chr16	23111314	23111374	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr4	131946717	131946738	protein_coding	Phactr4	intron	ENSMUSG00000066043	NonProperStrand	2	1	-8.9865
chr17	24720771	24720834	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr18	25483149	25483165	protein_coding	AW554918	intron	ENSMUSG00000033632	ProperStrand	5	1	-8.7338
chr8	121329693	121329710	protein_coding	Cdh13	intron	ENSMUSG00000031841	ProperStrand	17	chr7	16175472	16175488	protein_coding	Obox3	intron	ENSMUSG00000066772	ProperStrand	3	1	-15.8399
chr1	177360733	177360823	protein_coding	Rgs7	intron	ENSMUSG00000026527	NonProperStrand	5	chr1	175711204	175711284	pseudogene	Gm16340	.	ENSMUSG00000090222	ProperStrand	1	1	-inf
chr18	35557030	35557176	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr5	107907344	107907476	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	3	-7.5559
chr13	28951906	28951922	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	10	chr2	158356479	158356561	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-8.9720
chr18	10052131	10052156	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr11	116843219	116843235	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-9.4294
chr17	39847659	39847715	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	78183058	78183111	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	9	1	-3.0808
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr2	32963321	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-3.2120
chr9	66764372	66764392	protein_coding	Rab8b	intron	ENSMUSG00000036943	ProperStrand	2	chr2	5379273	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-9.4768
chr17	39846759	39846825	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr7	3694765	3694783	protein_coding	Gm14548	intron	ENSMUSG00000074417	NonProperStrand	2	1	-7.0123
chr15	52042791	52042881	LINE	L1_Mm	L1	chr15L1_Mm52042744	ProperStrand	1	chr15	52042600	52042680	SINE	B1_Mur4	Alu	chr15B1_Mur452042598	ProperStrand	1	1	-inf
chr12	105870794	105870884	SINE	B1_Mur2	Alu	chr12B1_Mur2105870790	NonProperStrand	1	chr12	105870975	105871055	SINE	B3	B2	chr12B3105870914	ProperStrand	1	1	-inf
chr17	39847181	39847202	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	141467769	141467787	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	6	1	-5.9886
chr17	39847739	39847881	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	61330224	61330243	protein_coding	Fam190a	intron	ENSMUSG00000039578	NonProperStrand	7	2	-6.2856
chr9	115408925	115409015	LTR	MTE2a	MaLR	chr9MTE2a115408855	ProperStrand	1	chr9	115409182	115409262	LTR	MTE2a	MaLR	chr9MTE2a115409108	ProperStrand	1	1	-inf
chr14	21652503	21652599	LTR	RLTR40	ERVK	chr14RLTR4021652448	ProperStrand	1	chr13	35992006	35992061	protein_coding	Rpp40	intron	ENSMUSG00000021418	ProperStrand	2	1	-inf
chr19	57589984	57590074	LTR	MERVL-int	ERVL	chr19MERVL-int57589217	NonProperStrand	1	chr19	57595429	57595509	SINE	RSINE1	B4	chr19RSINE157595432	NonProperStrand	1	1	-inf
chr2	117307701	117307791	LTR	MT2C_Mm	ERVL	chr2MT2C_Mm117307343	NonProperStrand	1	chr2	117308014	117308094	SINE	B4A	B4	chr2B4A117307991	ProperStrand	1	1	-inf
chr11	55482712	55482770	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chrX	4136308	4136354	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	1	-8.1348
chr11	75436152	75436232	protein_coding	Pitpna	intron	ENSMUSG00000017781	ProperStrand	2	chr11	75057028	75057118	protein_coding	Rtn4rl1	intron	ENSMUSG00000045287	NonProperStrand	2	1	-21.5566
chr15	103453929	103453945	LINE	Lx	L1	chr15Lx103451582	ProperStrand	1	chr17	39847037	39847135	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	1	-inf
chr5	70823996	70824076	LINE	L1Md_A	L1	chr5L1Md_A70823937	NonProperStrand	1	chr5	78446017	78446107	SINE	B4	B4	chr5B478446014	ProperStrand	1	1	-inf
chr17	39846846	39847081	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr12	80391639	80391729	protein_coding	Zfyve26	intron	ENSMUSG00000066440	ProperStrand	7	3	-10.5435
chr12	110502527	110502611	LINE	L1Md_F	L1	chr12L1Md_F110500000	ProperStrand	1	chr5	136243987	136244061	protein_coding	Styxl1	intron	ENSMUSG00000019178	NonProperStrand	2	1	-inf
chr2	32963367	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr7	16948027	16948044	protein_coding	Sae1	intron	ENSMUSG00000052833	ProperStrand	1	1	-inf
chr8	31534809	31534889	LINE	L1M2	L1	chr8L1M231534781	ProperStrand	1	chr8	31534999	31535089	LINE	Lx	L1	chr8Lx31534979	NonProperStrand	1	1	-inf
chr9	110281291	110281316	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	chrX	6483929	6483948	protein_coding	Dgkk	intron	ENSMUSG00000062393	ProperStrand	3	1	-12.6936
chr13	12817762	12817843	LINE	L1Md_F2	L1	chr13L1Md_F212817519	ProperStrand	2	chr13	11865307	11865397	protein_coding	Ryr2	intron	ENSMUSG00000021313	ProperStrand	3	2	-inf
chr9	123461840	123462158	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr9	110281286	110281342	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	5	-6.2911
chr10	22719997	22720077	LTR	BGLII_B	ERVK	chr10BGLII_B22719980	ProperStrand	1	chr10	22719606	22719696	SINE	B4A	B4	chr10B4A22719491	ProperStrand	1	1	-inf
chr13	44869595	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	8	-5.2129
chr4	155215424	155215504	protein_coding	Mxra8	intron	ENSMUSG00000029070	NonProperStrand	1	chr4	155206859	155206949	protein_coding	Aurkaip1	intron	ENSMUSG00000065990	NonProperStrand	1	1	-inf
chr9	89704765	89704781	LINE	L1Md_F2	L1	chr9L1Md_F289704521	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr4	132352442	132352528	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr17	35162621	35162687	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	1	-3.2704
chr13	44869972	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr19	44407680	44407713	protein_coding	Scd4	utr5	ENSMUSG00000050195	NonProperStrand	2	1	-9.9728
chr9	120130466	120130546	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr8	95746100	95746190	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-5.0731
chrX	103546149	103546229	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	NonProperStrand	7	chr10	76949688	76949778	lincRNA	2810425M01Rik	exon	ENSMUSG00000086832	ProperStrand	2	1	-18.7768
chr17	39847442	39847510	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	104636716	104636733	protein_coding	Ints4	intron	ENSMUSG00000025133	NonProperStrand	2	1	-6.4812
chr17	86035542	86035632	LINE	Lx	L1	chr17Lx86035535	ProperStrand	1	chr17	86035338	86035418	SINE	B2_Mm1a	B2	chr17B2_Mm1a86035346	ProperStrand	1	1	-inf
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr16	3856858	3856875	protein_coding	Zfp174	utr3	ENSMUSG00000054939	NonProperStrand	1	1	-inf
chr4	132352442	132352528	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr19	8724276	8724323	SINE	B1F	Alu	chr19B1F8724255	ProperStrand	4	1	-9.7326
chr17	39847197	39847221	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	42214351	42214370	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	13	1	-4.4011
chr17	39846531	39846551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chrX	72992111	72992132	lincRNA	4933407K13Rik	exon	ENSMUSG00000087396	NonProperStrand	7	1	-4.0682
chr17	12919666	12919696	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	56	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-3.7574
chr4	50995321	50995401	DNA	Charlie7	MER1_type	chr4Charlie750995341	NonProperStrand	1	chr4	50995049	50995139	LINE	Lx7	L1	chr4Lx750993802	ProperStrand	1	1	-inf
chr4	96510109	96510189	SINE	B4A	B4	chr4B4A96509967	ProperStrand	1	chr12	101600554	101600644	protein_coding	Ttc7b	intron	ENSMUSG00000033530	ProperStrand	3	1	-inf
chr9	66925260	66925340	DNA	Zaphod	Tip100	chr9Zaphod66925204	ProperStrand	1	chr9	66924888	66924978	SINE	B1_Mur4	Alu	chr9B1_Mur466924821	ProperStrand	1	1	-inf
chr17	51582313	51582403	LINE	L1M2	L1	chr17L1M251582309	NonProperStrand	1	chr17	51582572	51582652	LTR	MT2B	ERVL	chr17MT2B51582501	ProperStrand	1	1	-inf
chr1	122357188	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr2	120042232	120042248	protein_coding	Pla2g4e	intron	ENSMUSG00000050211	NonProperStrand	8	1	-9.5210
chr9	120130478	120130539	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr16	38158045	38158129	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	1	-7.0526
chr5	110692063	110692181	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	chr10	105238495	105238519	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-8.6023
chr17	35162562	35162620	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr8	126944903	126944981	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-4.1761
chr8	15775495	15775585	LINE	Lx9	L1	chr8Lx915775338	NonProperStrand	1	chr8	15775798	15775878	SINE	RSINE1	B4	chr8RSINE115775746	ProperStrand	1	1	-inf
chr5	146261154	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr16	24984418	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	1	-4.2523
chr11	109011792	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	123291348	123293282	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	5	-5.4311
chr4	132309951	132309987	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr7	99482275	99482296	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	32	1	-3.6893
chr15	96018419	96018509	lincRNA	2610037D02Rik	intron	ENSMUSG00000086809	NonProperStrand	1	chr15	96009944	96010024	lincRNA	2610037D02Rik	intron	ENSMUSG00000086809	ProperStrand	2	1	-inf
chr7	12987942	12988032	LINE	L1_Mur3	L1	chr7L1_Mur312987552	NonProperStrand	1	chr7	12988073	12988152	LINE	Lx4B	L1	chr7Lx4B12988091	ProperStrand	1	1	-inf
chr11	6620373	6620456	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr17	39848099	39848144	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-4.4690
chr10	82994021	82994039	protein_coding	Aldh1l2	intron	ENSMUSG00000020256	NonProperStrand	3	chr12	78350926	78351007	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	1	-15.0478
chr10	118687231	118687321	LINE	L1ME1	L1	chr10L1ME1118687171	ProperStrand	1	chr10	118686855	118686935	LTR	MTB_Mm	MaLR	chr10MTB_Mm118686766	ProperStrand	1	1	-inf
chr5	32395973	32396063	DNA	MER2	MER2_type	chr5MER232395928	NonProperStrand	1	chr5	32395622	32395702	LTR	RMER17A2	ERVK	chr5RMER17A232395057	NonProperStrand	1	1	-inf
chr2	90395136	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr6	115807974	115859696	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	5	-7.0379
chr1	164674027	164674107	SINE	B4A	B4	chr1B4A164674020	NonProperStrand	1	chr1	164673596	164673686	Unknown	MamRep605	Unknown	chr1MamRep605164673492	ProperStrand	1	1	-inf
chr13	44869611	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr7	111070678	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	2	-6.1768
chr6	39717772	39717862	SINE	RSINE1	B4	chr6RSINE139717797	ProperStrand	1	chr6	39717657	39717737	Simple_repeat	(TTTC)n	Simple_repeat	chr6(TTTC)n39717565	ProperStrand	1	1	-inf
chr1	143526683	143526773	LINE	L1Md_F2	L1	chr1L1Md_F2143526708	NonProperStrand	1	chr1	143526539	143526619	LINE	Lx7	L1	chr1Lx7143526034	NonProperStrand	1	1	-inf
chr10	23785346	23785429	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	70700699	70726122	protein_coding	Rabep1	intron	ENSMUSG00000020817	ProperStrand	4	2	-14.1925
chr16	44516419	44516439	protein_coding	Boc	intron	ENSMUSG00000022687	ProperStrand	4	chr9	123461822	123461849	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-6.4942
chr16	44658951	44659041	LINE	Lx2	L1	chr16Lx244658940	NonProperStrand	1	chr16	44659789	44659869	SINE	B1_Mus2	Alu	chr16B1_Mus244659697	NonProperStrand	1	1	-inf
chr18	33718753	33718843	LINE	Lx4A	L1	chr18Lx4A33717869	NonProperStrand	1	chr18	33607785	33607866	protein_coding	D0H4S114	intron	ENSMUSG00000042834	NonProperStrand	2	1	-inf
chr3	123507994	123508056	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr2	91444568	91444595	protein_coding	Ckap5	intron	ENSMUSG00000040549	NonProperStrand	1	1	-inf
chr12	19388165	19388182	SINE	B3	B2	chr12B319388035	NonProperStrand	5	chr2	130276236	130276312	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-9.1218
chr17	39846433	39846988	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	106501239	106501327	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	10	-3.3086
chr17	39846472	39846488	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	mmu-miR-1291	0	26	miRNA	mmu-miR-1291	.	mmu-miR-1291	ProperStrand	12	1	-3.0222
chr11	94946379	94946802	SINE	B1_Mm	Alu	chr11B1_Mm94946570	NonProperStrand	3	chr8	3803268	3803286	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	1	-14.8911
chr17	39848456	39848546	LINE	L1Md_T	L1	chr17L1Md_T39848464	NonProperStrand	29	chr14	8214961	8214978	protein_coding	Gm10339	intron	ENSMUSG00000071591	ProperStrand	1	1	-inf
chr11	97781824	97781880	SINE	MIRc	MIR	chr11MIRc97781828	ProperStrand	1	chr8	84029735	84029778	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	28	1	-inf
chr8	45062085	45062165	LINE	L1Md_T	L1	chr8L1Md_T45057065	NonProperStrand	2	chr4	24690444	24690534	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	5	1	-19.5000
chr4	148544433	148544449	SINE	B3	B2	chr4B3148544408	NonProperStrand	1	chr2	122123778	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr10	85479841	85479921	LINE	L1MC3	L1	chr10L1MC385479710	ProperStrand	1	chr10	85480212	85480302	LTR	RMER10A	ERVL	chr10RMER10A85480175	NonProperStrand	1	1	-inf
chr5	104956751	104956841	lincRNA	D930016D06Rik	intron	ENSMUSG00000090739	ProperStrand	1	chr14	33968098	33968178	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	1	-inf
chr11	69669735	69669769	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr17	12922847	12922908	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	1	-3.6698
chr7	113997943	113997961	LINE	L1_Mus4	L1	chr7L1_Mus4113996696	NonProperStrand	1	chr17	39847047	39847081	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr13	75442879	75442969	LINE	Lx9	L1	chr13Lx975442668	NonProperStrand	1	chr13	75443185	75443265	LINE	Lx9	L1	chr13Lx975442902	NonProperStrand	1	1	-inf
chr10	108033027	108033107	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	chr10	108042598	108042688	protein_coding	Syt1	intron	ENSMUSG00000035864	ProperStrand	5	1	-14.6351
chr2	167643794	167643868	SINE	B4A	B4	chr2B4A167643628	ProperStrand	1	chr18	35557044	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-inf
chr3	47460385	47460475	LTR	MTA_Mm	MaLR	chr3MTA_Mm47460137	NonProperStrand	1	chr3	47459858	47459938	LTR	RLTR1B	ERV1	chr3RLTR1B47459750	NonProperStrand	1	1	-inf
chr2	118207442	118207522	LINE	L1MA5	L1	chr2L1MA5118207353	NonProperStrand	1	chr2	118207229	118207319	LTR	MT2B	ERVL	chr2MT2B118206765	ProperStrand	1	1	-inf
chr8	4089002	4089082	lincRNA	Gm17605	exon	ENSMUSG00000091309	ProperStrand	1	chr1	183322553	183322643	protein_coding	Cnih3	intron	ENSMUSG00000026514	NonProperStrand	2	1	-inf
chr7	109520119	109520247	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr9	15313801	15315269	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	4	-3.6744
mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	5	chr7	141984950	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-13.9274
chr14	75847965	75848007	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr8	70504313	70504414	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	19	1	-7.9192
chr3	123507993	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr11	106501242	106501327	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	4	-4.3872
chr11	109011792	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	35556530	35556551	LTR	RMER17A	ERVK	chr17RMER17A35555875	ProperStrand	2	1	-7.3577
chr17	39847186	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	172562099	172562115	LTR	ERVL-int	ERVL	chr1ERVL-int172561704	ProperStrand	5	1	-6.3853
chrX	159877566	159877587	LINE	Lx8	L1	chrXLx8159877561	NonProperStrand	2	chr17	39847880	39847902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-6.4812
chr11	69667887	69667921	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr8	13876096	13876186	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-3.0195
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	99956730	99956748	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	ProperStrand	4	1	-5.5999
chr9	108446606	108446686	protein_coding	Qrich1	intron	ENSMUSG00000006673	NonProperStrand	2	chr9	108579314	108579404	protein_coding	Slc25a20	intron	ENSMUSG00000032602	NonProperStrand	5	1	-19.5000
chr17	39846776	39846793	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	138903422	138903517	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	8	1	-3.8005
chr6	64874490	64874580	LTR	MERVL-int	ERVL	chr6MERVL-int64874493	ProperStrand	1	chr6	64874365	64874445	LTR	MT2_Mm	ERVL	chr6MT2_Mm64873995	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr2	158356424	158359919	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	5	-8.0845
chr19	13980023	13980042	LINE	L1Md_T	L1	chr19L1Md_T13979810	ProperStrand	1	chr16	23110825	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr4	131843575	131843591	protein_coding	Taf12	intron	ENSMUSG00000028899	NonProperStrand	2	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-9.9953
chr6	81555882	81555972	LTR	RMER15	ERVL	chr6RMER1581555825	ProperStrand	1	chr1	155166927	155167007	protein_coding	Lamc1	intron	ENSMUSG00000026478	ProperStrand	3	1	-inf
chr13	82165836	82165926	LINE	L1Md_T	L1	chr13L1Md_T82161583	ProperStrand	1	chr13	82166444	82166524	LINE	L1VL4	L1	chr13L1VL482166106	ProperStrand	1	1	-inf
chr5	146261175	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr12	70937902	70937919	protein_coding	Map4k5	intron	ENSMUSG00000034761	NonProperStrand	4	1	-8.1425
chr14	72530225	72530315	Other	RMER1A	Other	chr14RMER1A72530231	ProperStrand	1	chr14	72530587	72530667	Other	RMER1B	Other	chr14RMER1B72530434	ProperStrand	1	1	-inf
chr8	70895758	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr2	5379278	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	7	-5.3928
chr6	45544577	45544595	protein_coding	Cntnap2	intron	ENSMUSG00000039419	NonProperStrand	15	chr7	98464287	98464306	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	26	1	-11.4147
chr14	123095421	123095440	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	chr7	28351533	28351567	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-9.3678
chr10	90969919	90969935	LINE	L2	L2	chr10L290969922	NonProperStrand	1	chr17	39847618	39847636	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr7	6200179	6200269	SINE	B3	B2	chr7B36200126	NonProperStrand	1	chr7	6200413	6200493	SINE	B3A	B2	chr7B3A6200349	NonProperStrand	1	1	-inf
chr2	93685583	93685663	protein_coding-noncoding	Accs	utr3	ENSMUSG00000040272	NonProperStrand	1	chr2	93685747	93685837	protein_coding	Accs	intron	ENSMUSG00000040272	NonProperStrand	1	1	-inf
chr3	104015381	104015482	protein_coding	Magi3	intron	ENSMUSG00000052539	ProperStrand	6	chr7	14689990	14690008	protein_coding	Sult2a3	intron	ENSMUSG00000074375	NonProperStrand	3	1	-18.0454
chr4	132309515	132309546	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr8	88200419	88200436	protein_coding	Neto2	intron	ENSMUSG00000036902	ProperStrand	2	1	-9.7441
chr11	116215101	116215122	protein_coding-noncoding	Rnf157	utr3	ENSMUSG00000052949	NonProperStrand	1	chr16	23110912	23110932	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr16	68769417	68769507	LTR	MT2B2	ERVL	chr16MT2B268768987	ProperStrand	1	chr16	68769732	68769812	LTR	RMER19C	ERVK	chr16RMER19C68769579	ProperStrand	1	1	-inf
chr4	132352775	132352838	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr1	71641172	71641218	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	17	1	-6.6388
chr4	145745108	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-6.9901
chr14	75847961	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr8	126944952	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-3.8404
chr15	34440845	34440891	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-3.3951
chr8	67496819	67496899	LTR	MERVL-int	ERVL	chr8MERVL-int67496827	NonProperStrand	1	chr8	67496690	67496780	LTR	MT2_Mm	ERVL	chr8MT2_Mm67496314	NonProperStrand	1	1	-inf
chr19	12854233	12854323	protein_coding	Zfp91	intron	ENSMUSG00000024695	ProperStrand	1	chr17	21529756	21529836	protein_coding	Zfp677	intron	ENSMUSG00000062743	NonProperStrand	1	1	-inf
chr7	141448814	141448940	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	2	-5.0314
chr1	91286543	91286613	SINE	ID_B1	B4	chr1ID_B191286454	NonProperStrand	1	chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	6	1	-inf
chr10	60839366	60839384	protein_coding	X99384	intron	ENSMUSG00000020092	NonProperStrand	3	chr5	121205022	121205090	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-9.9198
chr2	5379317	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr16	94526862	94526878	protein_coding	Hlcs	intron	ENSMUSG00000040820	ProperStrand	5	1	-7.1918
chr17	39847509	39847530	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	127566755	127566815	protein_coding	Rbms2	utr3	ENSMUSG00000040043	ProperStrand	6	1	-3.8783
chr16	84005993	84006083	LINE	Lx8	L1	chr16Lx884005926	NonProperStrand	1	chr16	84005801	84005881	SINE	B1_Mm	Alu	chr16B1_Mm84005786	NonProperStrand	1	1	-inf
chr17	39846419	39846487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	155900521	155900574	protein_coding	Cpne1	intron	ENSMUSG00000074643	ProperStrand	1	1	-inf
chr7	12930809	12930847	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	4	chr4	123291365	123291418	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-12.5470
chr6	88167156	88167236	DNA	MER44B	MER2_type	chr6MER44B88166868	NonProperStrand	1	chr6	88167575	88167665	SINE	B3	B2	chr6B388167594	ProperStrand	1	1	-inf
chr17	46889780	46889860	lincRNA	Gm16736	intron	ENSMUSG00000086673	NonProperStrand	1	chr17	46889016	46889106	protein_coding	Cnpy3	utr5	ENSMUSG00000023973	ProperStrand	2	1	-inf
chr6	81956841	81956858	LINE	L1Md_A	L1	chr6L1Md_A81955193	ProperStrand	1	chr2	90395137	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr7	120873439	120873529	LINE	Lx8	L1	chr7Lx8120873393	NonProperStrand	1	chr7	120873276	120873356	LTR	ORR1B1	MaLR	chr7ORR1B1120873034	ProperStrand	1	1	-inf
chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr7	28351506	28351581	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	2	-3.3875
chr1	122357187	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr3	153912182	153912204	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	16	1	-8.0742
chr8	3803242	3803332	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	chr13	97190554	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-4.1628
chr4	132309940	132310013	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr6	135188835	135188851	protein_coding	8430419L09Rik	intron	ENSMUSG00000030207	ProperStrand	2	1	-9.7441
chr12	28437894	28437915	LINE	L1_Mus1	L1	chr12L1_Mus128437502	ProperStrand	1	chr8	124054371	124054467	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	48	1	-inf
chr16	23110771	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr17	7952211	7952268	protein_coding	Fndc1	intron	ENSMUSG00000071984	ProperStrand	4	2	-12.1036
chr10	95083366	95083446	LTR	ORR1A4	MaLR	chr10ORR1A495083370	ProperStrand	1	chr10	95083024	95083114	SINE	ID_B1	B4	chr10ID_B195082951	ProperStrand	1	1	-inf
chr11	6528115	6528164	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr11	119541324	119541341	protein_coding	Rptor	intron	ENSMUSG00000025583	ProperStrand	6	1	-10.4468
chr13	55002495	55002511	LINE	L1ME3A	L1	chr13L1ME3A55002170	ProperStrand	1	chr16	23110767	23110794	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-inf
chr6	16889862	16889942	LINE	Lx8	L1	chr6Lx816889786	NonProperStrand	1	chr6	16890268	16890358	LINE	Lx8	L1	chr6Lx816890288	ProperStrand	1	1	-inf
chr17	35078177	35078194	SINE	B3	B2	chr17B335078041	ProperStrand	1	chr2	90395158	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr5	121205091	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr3	109339467	109339488	protein_coding	Vav3	intron	ENSMUSG00000033721	ProperStrand	1	1	-inf
chrX	37082950	37083000	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr2	130276254	130276304	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-3.2350
chr4	132309581	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr9	65196570	65196595	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	4	1	-7.9626
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr2	156144376	156144432	protein_coding	4921517L17Rik	intron	ENSMUSG00000038085	ProperStrand	1	1	-inf
chr13	20135661	20135741	LTR	MTEa	MaLR	chr13MTEa20135622	NonProperStrand	1	chr13	20135885	20135975	SINE	B2_Mm2	B2	chr13B2_Mm220135862	ProperStrand	1	1	-inf
chrX	4899369	4899402	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-3.6086
chr1	72949045	72949135	LTR	MT2A	ERVL	chr1MT2A72948932	ProperStrand	1	chr1	72949351	72949431	LTR	ORR1E	MaLR	chr1ORR1E72949358	NonProperStrand	1	1	-inf
chr9	123462082	123462124	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr13	44869617	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	21	1	-10.6460
chr9	123462102	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr7	141009817	141009843	protein_coding	Fank1	intron	ENSMUSG00000053111	NonProperStrand	2	1	-8.2644
chr10	105238421	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	chr16	23110835	23110888	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	3	-6.1092
chr12	104088573	104088653	protein_coding	Btbd7	intron	ENSMUSG00000041702	NonProperStrand	2	chr12	104058812	104058902	protein_coding	Btbd7	intron	ENSMUSG00000041702	ProperStrand	1	1	-inf
chr3	98744846	98744926	lincRNA	5730437C11Rik	intron	ENSMUSG00000085121	ProperStrand	1	chr8	65499801	65499891	protein_coding	Spock3	intron	ENSMUSG00000054162	NonProperStrand	2	1	-inf
chr17	39847956	39847973	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	35978740	35978756	protein_coding	Mdc1	intron	ENSMUSG00000061607	NonProperStrand	2	1	-6.4812
chr11	6620336	6620449	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr9	123461954	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	2	-3.9931
chr3	5767160	5767240	LINE	L1Md_F2	L1	chr3L1Md_F25766837	NonProperStrand	1	chr14	33967692	33967782	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	1	-inf
chr6	26916086	26916176	LINE	L1Md_A	L1	chr6L1Md_A26910433	NonProperStrand	1	chr6	26916322	26916402	LINE	L1Md_A	L1	chr6L1Md_A26916226	NonProperStrand	1	1	-inf
chr14	97519427	97519517	LINE	L1Md_A	L1	chr14L1Md_A97515824	NonProperStrand	1	chr19	28511017	28511097	protein_coding	Glis3	intron	ENSMUSG00000052942	NonProperStrand	5	1	-inf
chr11	69669695	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr12	87437761	87437781	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	1	-3.1840
chr1	93037822	93037912	LINE	Lx3_Mus	L1	chr1Lx3_Mus93037808	NonProperStrand	1	chr1	93037643	93037723	SINE	B1_Mur3	Alu	chr1B1_Mur393037580	ProperStrand	1	1	-inf
chr9	123461935	123462078	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr16	23110456	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	2	-3.5757
mmu-miR-6240	1	25	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr2	5379268	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	8	-16.4366
chr11	6528085	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr4	132352441	132352825	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	2	-5.2527
chr3	90787864	90787954	LINE	L1Md_F2	L1	chr3L1Md_F290784223	NonProperStrand	1	chrX	103545909	103545989	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	NonProperStrand	7	1	-inf
chr10	23785349	23785397	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr16	23110456	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-3.8148
chr19	26845674	26845762	processed_transcript	4931403E22Rik	.	ENSMUSG00000093772	ProperStrand	4	chr19	55298069	55298149	protein_coding	Gucy2g	intron	ENSMUSG00000055523	ProperStrand	1	1	-inf
chr4	15761702	15761792	LTR	RMER5	ERV1	chr4RMER515761500	NonProperStrand	1	chr4	15761912	15761992	SINE	B1_Mus1	Alu	chr4B1_Mus115761898	NonProperStrand	1	1	-inf
chr3	100534797	100534877	Other	RMER1B	Other	chr3RMER1B100534688	ProperStrand	1	chr3	100535031	100535121	SINE	B4	B4	chr3B4100534959	ProperStrand	1	1	-inf
chr2	5379271	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	1	-4.6513
chr8	98583937	98584027	LINE	L1MA6	L1	chr8L1MA698583808	NonProperStrand	1	chr8	98583691	98583771	LINE	Lx4B	L1	chr8Lx4B98583230	ProperStrand	1	1	-inf
chr13	13240372	13240462	LINE	Lx	L1	chr13Lx13234817	ProperStrand	1	chr13	12938655	12938735	LINE	Lx3_Mus	L1	chr13Lx3_Mus12938164	ProperStrand	1	1	-inf
chr4	90507136	90507217	Low_complexity	GA-rich	Low_complexity	chr4GA-rich90507107	ProperStrand	1	chr4	90507277	90507367	Low_complexity	GA-rich	Low_complexity	chr4GA-rich90507254	ProperStrand	1	1	-inf
chr15	41011937	41012017	LTR	RLTR13C1	ERVK	chr15RLTR13C141011883	NonProperStrand	1	chr15	41011754	41011844	LTR	RMER17D2	ERVK	chr15RMER17D241011036	ProperStrand	1	1	-inf
chr2	93741947	93742037	LTR	ORR1E	MaLR	chr2ORR1E93741808	ProperStrand	1	chr2	93741437	93741517	SINE	B4	B4	chr2B493741332	ProperStrand	1	1	-inf
chr12	56520432	56520522	SINE	B3A	B2	chr12B3A56520441	ProperStrand	1	chr7	6010593	6010673	protein_coding	Nlrp4c	intron	ENSMUSG00000034690	NonProperStrand	1	1	-inf
chr7	118491497	118491574	SINE	B4A	B4	chr7B4A118491291	ProperStrand	1	chr11	69669638	69669728	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-inf
chr17	66195017	66195097	LINE	Lx9	L1	chr17Lx966194571	NonProperStrand	1	chr17	66191951	66192041	LTR	MTD-int	MaLR	chr17MTD-int66191429	ProperStrand	1	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	127913031	127923617	protein_coding	Tspan9	intron	ENSMUSG00000030352	NonProperStrand	1	1	-inf
chr2	113940270	113940360	protein_coding-noncoding	Aqr	utr3	ENSMUSG00000040383	ProperStrand	1	chr2	113940495	113940575	protein_coding	Aqr	intron	ENSMUSG00000040383	ProperStrand	2	1	-inf
chr12	110522686	110544160	LINE	Lx	L1	chr12Lx110535784	ProperStrand	1	chr17	39847619	39847699	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr10	111987589	111987669	LINE	L1_Mm	L1	chr10L1_Mm111987489	ProperStrand	2	chr6	85572074	85572164	protein_coding	Alms1	exon	ENSMUSG00000063810	ProperStrand	1	1	-inf
chr3	95232625	95233533	lincRNA	Gm4349	exon	ENSMUSG00000091761	ProperStrand	1	chr3	107309084	107309174	protein_coding	Slc6a17	intron	ENSMUSG00000027894	ProperStrand	1	1	-inf
chr2	161075073	161075153	DNA	MER119	MER1_type	chr2MER119161074622	ProperStrand	1	chr2	161075508	161075598	LINE	Lx7	L1	chr2Lx7161075414	NonProperStrand	1	1	-inf
chr2	150355207	150355297	LINE	Lx7	L1	chr2Lx7150355148	ProperStrand	1	chr2	150355504	150355584	SINE	B1_Mm	Alu	chr2B1_Mm150355417	ProperStrand	1	1	-inf
chr12	69841560	69841576	LINE	Lx5	L1	chr12Lx569841383	ProperStrand	1	chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr13	53145375	53145455	LINE	L1MC2	L1	chr13L1MC253145335	NonProperStrand	1	chr13	53144905	53144995	Simple_repeat	(GAGAA)n	Simple_repeat	chr13(GAGAA)n53144900	NonProperStrand	1	1	-inf
chr4	55418779	55418797	LTR	MTD	MaLR	chr4MTD55418670	NonProperStrand	1	chr11	113901594	113901610	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	1	-inf
chr17	39848486	39848569	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr17	39843951	39844016	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	24	1	-6.5536
chr13	44869600	44869710	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr8	124385628	124385677	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	48	1	-3.1513
chr2	5379289	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr9	21397578	21397609	protein_coding	1810026J23Rik	intron	ENSMUSG00000048429	ProperStrand	1	1	-inf
chr4	43492990	43493029	SINE	B3	B2	chr4B343492960	NonProperStrand	40	chr16	23110753	23110803	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-5.9298
chr5	35266216	35266236	protein_coding	A930005I04Rik	utr3	ENSMUSG00000051246	NonProperStrand	9	chr2	156580226	156580246	protein_coding	Dlgap4	intron	ENSMUSG00000061689	NonProperStrand	1	1	-inf
chr9	25587422	25587502	LTR	MTA_Mm-int	MaLR	chr9MTA_Mm-int25587184	ProperStrand	1	chr9	25587109	25587199	LTR	RLTR10	ERVK	chr9RLTR1025586761	ProperStrand	1	1	-inf
chr9	123462009	123462030	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr3	62159318	62159352	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	1	-3.6260
chr11	96820324	96820424	protein_coding	Sp2	intron	ENSMUSG00000018678	ProperStrand	4	chr2	90395129	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.1761
chr18	18433473	18433561	LINE	Lx9	L1	chr18Lx918432854	ProperStrand	1	chr18	18433772	18433852	LINE	Lx9	L1	chr18Lx918433754	ProperStrand	1	1	-inf
chr4	56897678	56897746	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	chr9	15313811	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-4.2932
chr17	39845821	39845911	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chr6	3201474	3201554	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	1	-3.9347
chr7	28351535	28351616	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	chr5	107905176	107907471	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	2	-8.2778
chr13	42214351	42214370	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	13	chr2	90395147	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-4.6792
chr9	14575411	14592815	protein_coding	Mre11a	intron	ENSMUSG00000031928	NonProperStrand	2	chr17	33528823	33528903	protein_coding	Zfp101	intron	ENSMUSG00000055240	NonProperStrand	1	1	-inf
chr11	109011748	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	22744850	22744918	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	5	-5.6836
chr14	64189445	64189535	LTR	RLTR12B	ERVK	chr14RLTR12B64189376	NonProperStrand	1	chr14	65843096	65843176	protein_coding	Fzd3	intron	ENSMUSG00000007989	ProperStrand	4	1	-inf
chr14	41365606	41365686	LINE	L1Md_Gf	L1	chr14L1Md_Gf41359892	ProperStrand	1	chr10	122565822	122565912	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	1	-inf
chr7	141448814	141448877	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr12	87437685	87437785	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	1	-6.6688
chr2	44646921	44647011	protein_coding-noncoding	Gtdc1	utr3	ENSMUSG00000036890	ProperStrand	1	chr2	44647069	44647149	protein_coding	Gtdc1	intron	ENSMUSG00000036890	ProperStrand	4	1	-inf
chr10	76717135	76717157	SINE	B2_Mm2	B2	chr10B2_Mm276717070	ProperStrand	1	chr13	44869591	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-inf
chr12	111263923	111263954	SINE	B4A	B4	chr12B4A111263802	ProperStrand	1	chr3	108429286	108429329	protein_coding	Wdr47	intron	ENSMUSG00000040389	NonProperStrand	1	1	-inf
chr9	47321214	47321304	DNA	MamRep1879	hAT?	chr9MamRep187947321115	ProperStrand	1	chr9	47320959	47321039	LTR	MT2B	ERVL	chr9MT2B47320508	NonProperStrand	1	1	-inf
chr4	19927741	19927821	LTR	MLT2B3	ERVL	chr4MLT2B319927699	NonProperStrand	3	chr4	19927590	19927680	SINE	B1_Mus1	Alu	chr4B1_Mus119927527	ProperStrand	3	3	-inf
chr2	121963896	121963986	protein_coding	Patl2	intron	ENSMUSG00000027233	NonProperStrand	4	chr17	21529464	21529544	protein_coding	Zfp677	utr5	ENSMUSG00000062743	ProperStrand	1	1	-inf
chr2	90395156	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	181589645	181589662	protein_coding	Pcmtd2	exon	ENSMUSG00000027589	NonProperStrand	1	1	-inf
chr14	70203407	70207531	protein_coding	Rhobtb2	intron	ENSMUSG00000022075	ProperStrand	2	chr8	70895758	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-11.1929
chr15	59063327	59063345	LTR	RLTR19	ERVK	chr15RLTR1959063078	NonProperStrand	2	chr2	90395160	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-8.9527
chr18	80504795	80504875	LTR	MTA_Mm-int	MaLR	chr18MTA_Mm-int80504756	NonProperStrand	1	chr18	80504535	80504625	LTR	MTA_Mm	MaLR	chr18MTA_Mm80504361	NonProperStrand	1	1	-inf
chr17	39846769	39846822	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	23570993	23571038	protein_coding	Btn2a2	intron	ENSMUSG00000053216	ProperStrand	2	1	-7.0123
chr5	104449675	104449765	protein_coding	Hsd17b11	intron	ENSMUSG00000029311	ProperStrand	1	chr5	104606544	104606624	protein_coding	Dspp	exon	ENSMUSG00000053268	ProperStrand	1	1	-inf
chr11	18268419	18268509	LINE	Lx3_Mus	L1	chr11Lx3_Mus18267809	NonProperStrand	1	chr11	18268604	18268684	SINE	B3	B2	chr11B318268567	NonProperStrand	1	1	-inf
chr5	86636084	86636174	LINE	L1Md_F2	L1	chr5L1Md_F286636056	NonProperStrand	1	chr5	86635937	86636017	LTR	RLTR10	ERVK	chr5RLTR1086635518	NonProperStrand	1	1	-inf
chr12	99645566	99645661	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr18	35557191	35557219	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-5.2688
chr11	109011747	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	123103042	123103081	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	13	1	-3.1856
chr11	55482776	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr16	44729254	44729271	protein_coding	BC027231	intron	ENSMUSG00000036208	ProperStrand	1	1	-inf
chr17	24720803	24721868	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr19	8888556	8888686	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	3	-3.0875
chr1	128970959	128971039	LINE	L1_Mur2	L1	chr1L1_Mur2128970932	NonProperStrand	1	chr1	128970701	128970791	LTR	ORR1A4	MaLR	chr1ORR1A4128970614	ProperStrand	1	1	-inf
chr17	39847620	39847704	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	45568413	45568479	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	4	1	-4.7422
chr7	131617442	131617522	LINE	L1Md_F2	L1	chr7L1Md_F2131616580	ProperStrand	1	chr7	131617622	131617712	LINE	Lx7	L1	chr7Lx7131617644	NonProperStrand	1	1	-inf
chr17	39847738	39847795	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	75365231	75365250	LTR	MTC	MaLR	chr4MTC75365045	ProperStrand	1	1	-inf
chr12	19388165	19388182	SINE	B3	B2	chr12B319388035	NonProperStrand	5	chr7	109520117	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-8.4746
chr1	151717854	151717965	protein_coding	Pla2g4a	intron	ENSMUSG00000056220	NonProperStrand	3	chr16	23110894	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr16	23110394	23110448	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr19	8977413	8977607	protein_coding	Ganab	intron	ENSMUSG00000071650	ProperStrand	1	1	-inf
chr15	102717810	102717890	LINE	Lx2B	L1	chr15Lx2B102717749	NonProperStrand	1	chr15	102716254	102716344	LTR	MTD	MaLR	chr15MTD102716178	ProperStrand	1	1	-inf
chr1	89898305	89898395	protein_coding	Usp40	intron	ENSMUSG00000005501	ProperStrand	3	chr1	89560109	89560189	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	10	1	-16.9469
chr5	146261286	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr15	34440790	34440811	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-3.3456
chr17	24719681	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr2	158359812	158359833	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-3.4146
chrX	74272481	74272566	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr9	15313847	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-3.6796
chr2	22744853	22744886	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr7	110046444	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	1	-6.2302
chr4	70281082	70281172	SINE	B3	B2	chr4B370280973	ProperStrand	1	chr4	70281377	70281457	SINE	ID_B1	B4	chr4ID_B170281302	ProperStrand	1	1	-inf
chr1	105496956	105497036	LINE	L1VL2	L1	chr1L1VL2105495869	NonProperStrand	1	chr1	105498080	105498170	LINE	L1VL2	L1	chr1L1VL2105497087	ProperStrand	2	1	-inf
chr17	39847428	39848046	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	36	-7.3919
chr17	39847449	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	48801851	48801871	protein_coding	Gm6871	exon	ENSMUSG00000090744	ProperStrand	1	1	-inf
chr17	39843506	39843535	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	chr11	116672508	116672569	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	3	1	-12.3270
chr11	109011790	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	50195523	50195539	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	6	1	-4.7173
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	16	chr17	24720771	24720795	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-6.2782
chr4	132352895	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr2	130276251	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	2	-3.7498
chr12	77787367	77787386	protein_coding	Spnb1	intron	ENSMUSG00000021061	ProperStrand	1	chr8	70895757	70895857	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-inf
chr3	39118423	39118439	LINE	L1Md_T	L1	chr3L1Md_T39117553	ProperStrand	3	chr9	123461804	123461821	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-7.1766
chr5	53266521	53266601	LINE	L1M2	L1	chr5L1M253266072	NonProperStrand	1	chr5	53266795	53266885	LTR	MT2A	ERVL	chr5MT2A53266760	NonProperStrand	1	1	-inf
chr13	44869943	44870015	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr9	118674952	118674997	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	10	1	-6.2025
chr10	48721543	48721623	LTR	ETnERV2-int	ERVK	chr10ETnERV2-int48721460	ProperStrand	1	chr10	48721710	48721800	LTR	ETnERV2-int	ERVK	chr10ETnERV2-int48721684	ProperStrand	1	1	-inf
chr14	47415452	47415532	LTR	MMERVK10C-int	ERVK	chr14MMERVK10C-int47415432	ProperStrand	1	chr14	47416166	47416256	LTR	MMERVK10C-int	ERVK	chr14MMERVK10C-int47416083	ProperStrand	1	1	-inf
chr6	3201474	3201564	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr17	39843371	39843451	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	1	-4.9763
chr17	39846580	39846630	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr4	117578408	117578508	protein_coding	Ipo13	intron	ENSMUSG00000033365	ProperStrand	1	1	-inf
chrX	102933824	102933841	LINE	L1Md_T	L1	chrXL1Md_T102931966	NonProperStrand	2	chr17	39847680	39847697	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-6.4812
chr14	32191981	32192051	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr4	132309952	132310042	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-4.1569
chr12	60132852	60132941	LTR	MTC-int	MaLR	chr12MTC-int60132840	ProperStrand	1	chr12	60133181	60133261	SINE	B1_Mus1	Alu	chr12B1_Mus160133188	NonProperStrand	1	1	-inf
chr5	147580304	147580320	protein_coding	Usp12	intron	ENSMUSG00000029640	ProperStrand	2	chr4	56897677	56897745	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-15.2413
chr9	123461822	123461874	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr9	118674952	118674985	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	10	1	-4.5433
chr10	49994703	49994793	LINE	L1Md_F2	L1	chr10L1Md_F249989732	ProperStrand	1	chr10	49997886	49997966	LTR	MER67D	ERV1	chr10MER67D49997853	NonProperStrand	1	1	-inf
chr3	87915097	87915134	protein_coding	Iqgap3	intron	ENSMUSG00000028068	ProperStrand	1	chr9	15314847	15314922	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr6	140548032	140548057	LTR	RLTR42-int	ERVK	chr6RLTR42-int140547867	NonProperStrand	2	chr12	8324526	8324658	protein_coding	Hs1bp3	intron	ENSMUSG00000020605	ProperStrand	2	2	-inf
chr17	39848098	39848135	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr9	64296003	64296066	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	10	1	-6.9748
chr10	81486727	81486747	LTR	MYSERV16_I-int	ERVK	chr10MYSERV16_I-int81486439	NonProperStrand	1	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-inf
chr17	39846619	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr19	55295502	55295518	protein_coding	Gucy2g	intron	ENSMUSG00000055523	NonProperStrand	1	1	-inf
chr4	136992361	136992441	SINE	B4A	B4	chr4B4A136992219	ProperStrand	1	chr4	136992686	136992776	antisense	Gm13010	.	ENSMUSG00000086845	NonProperStrand	1	1	-inf
chr13	75112663	75112753	Low_complexity	AT_rich	Low_complexity	chr13AT_rich75112664	ProperStrand	1	chr13	75112545	75112625	Simple_repeat	(TAGA)n	Simple_repeat	chr13(TAGA)n75112396	ProperStrand	1	1	-inf
chr5	110653701	110653718	protein_coding	Golga3	utr3	ENSMUSG00000029502	ProperStrand	3	chr7	109520134	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-9.6724
chr8	43352944	43353034	LINE	L1Md_T	L1	chr8L1Md_T43351575	ProperStrand	1	chr10	122565236	122565316	protein_coding	Usp15	utr3	ENSMUSG00000020124	ProperStrand	9	1	-inf
chr2	114112540	114112630	LINE	L1Md_F3	L1	chr2L1Md_F3114112278	NonProperStrand	1	chr2	114112647	114113292	SINE	B3A	B2	chr2B3A114113136	ProperStrand	1	1	-inf
chr16	50528862	50528879	lincRNA	G730013B05Rik	intron	ENSMUSG00000085617	ProperStrand	2	chr19	8888545	8888596	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr14	45064374	45064464	LINE	Lx2	L1	chr14Lx245062958	ProperStrand	2	chr5	137954383	137954463	protein_coding	Epo	intron	ENSMUSG00000029711	NonProperStrand	2	2	-inf
chr9	123461802	123462189	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr5	121205006	121205105	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	11	-5.1200
chr11	43241799	43241818	LINE	L1VL2	L1	chr11L1VL243241498	NonProperStrand	1	chr17	39848201	39848291	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	1	-inf
chr17	39847477	39847538	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	102328621	102328640	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	ProperStrand	4	1	-4.7422
chr11	109011648	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr13	44869575	44870026	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	32	-12.5309
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	24205636	24205653	protein_coding	Kctd5	intron	ENSMUSG00000016946	ProperStrand	3	1	-6.2761
chr17	34952012	34952058	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr9	110281288	110281317	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-6.6346
chr17	39847058	39847319	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	97190540	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	18	-8.6052
chr3	96724368	96724390	protein_coding	Gja8	intron	ENSMUSG00000049908	ProperStrand	8	chr7	141984950	141985434	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-12.8984
chr9	99278395	99278475	LTR	RMER15	ERVL	chr9RMER1599278406	ProperStrand	1	chr9	99278288	99278378	LTR	RMER17C	ERVK	chr9RMER17C99278140	NonProperStrand	1	1	-inf
chr10	59438614	59438631	SINE	B3	B2	chr10B359438585	NonProperStrand	1	chr17	24720817	24720871	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-inf
chr11	69669735	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr9	40803994	40804068	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	23	1	-5.3808
chr17	24719706	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr2	90519880	90519901	protein_coding	Nup160	intron	ENSMUSG00000051329	NonProperStrand	3	1	-11.2158
chr17	26655692	26655770	LINE	L1M4	L1	chr17L1M426655533	ProperStrand	1	chr19	55498575	55499252	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	8	1	-inf
chr8	70895812	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr14	31504316	31504448	protein_coding	Rft1	utr3	ENSMUSG00000052395	ProperStrand	3	1	-10.0967
chr11	69667932	69667976	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr5	104209915	104210102	protein_coding	Aff1	intron	ENSMUSG00000029313	NonProperStrand	4	1	-9.0671
chr9	19657783	19657863	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	chr4	20289164	20289254	protein_coding	Nkain3	intron	ENSMUSG00000055761	ProperStrand	7	2	-20.6094
chr6	50563527	50563607	LTR	IAPEz-int	ERVK	chr6IAPEz-int50563355	NonProperStrand	1	chr11	78889873	78889963	protein_coding	Ksr1	intron	ENSMUSG00000018334	NonProperStrand	1	1	-inf
chr12	75877114	75877204	LINE	L1Md_F2	L1	chr12L1Md_F275876742	ProperStrand	1	chr12	80197486	80197566	LTR	ORR1B1-int	MaLR	chr12ORR1B1-int80196802	ProperStrand	1	1	-inf
chr17	48006458	48006481	protein_coding	Foxp4	intron	ENSMUSG00000023991	ProperStrand	1	chr16	23110473	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-inf
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	118674952	118674985	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	10	1	-5.2066
chr18	19587486	19587566	LINE	L1_Mus2	L1	chr18L1_Mus219587290	NonProperStrand	1	chr18	19587673	19587763	LINE	L1_Mus2	L1	chr18L1_Mus219587567	ProperStrand	1	1	-inf
chr2	90395139	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	36971576	36971594	protein_coding	D5Ertd579e	intron	ENSMUSG00000029190	ProperStrand	5	1	-6.6729
chr11	120358506	120358596	protein_coding-noncoding	Slc25a10	utr5	ENSMUSG00000025792	ProperStrand	1	chr11	120358312	120358392	protein_coding	Slc25a10	intron	ENSMUSG00000025792	ProperStrand	1	1	-inf
chr17	12919584	12919604	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	56	chr6	97162816	97162893	protein_coding	Arl6ip5	intron	ENSMUSG00000035199	NonProperStrand	7	1	-11.4681
chr16	11144112	11144202	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chr15	86214346	86214381	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-9.0562
chr15	25812178	25812226	protein_coding	Fam134b	intron	ENSMUSG00000022270	ProperStrand	4	chr16	23110837	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr5	146261154	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr6	83485906	83485927	protein_coding	Actg2	intron	ENSMUSG00000059430	NonProperStrand	1	1	-inf
chr12	67667916	67668006	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	chr10	72841298	72841378	protein_coding	Pcdh15	intron	ENSMUSG00000052613	NonProperStrand	9	1	-11.8226
chr10	69122602	69122692	protein_coding	Ank3	intron	ENSMUSG00000069601	NonProperStrand	7	chr10	69121671	69121751	protein_coding	Ank3	intron	ENSMUSG00000069601	ProperStrand	12	1	-14.6160
chr5	149048194	149048274	protein_coding	Mtus2	intron	ENSMUSG00000029651	ProperStrand	8	chr4	147041643	147041733	protein_coding	2610305D13Rik	intron	ENSMUSG00000066000	ProperStrand	1	1	-inf
chr18	34395270	34395360	protein_coding	Apc	intron	ENSMUSG00000005871	NonProperStrand	2	chr10	122565928	122566008	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	1	-16.3143
chr6	101386025	101386105	LINE	L1_Mur3	L1	chr6L1_Mur3101384801	NonProperStrand	1	chr6	101386236	101386326	SINE	B3	B2	chr6B3101386163	NonProperStrand	1	1	-inf
chr10	51133455	51133535	LINE	Lx6	L1	chr10Lx651133396	NonProperStrand	1	chr10	51133291	51133381	LTR	ORR1A2	MaLR	chr10ORR1A251133069	ProperStrand	1	1	-inf
chr4	137768680	137768760	SINE	B1_Mm	Alu	chr4B1_Mm137768619	ProperStrand	1	chr4	137769079	137769169	SINE	B1_Mur2	Alu	chr4B1_Mur2137769066	ProperStrand	1	1	-inf
chr16	16684693	16684783	LINE	L1_Mur3	L1	chr16L1_Mur316684381	NonProperStrand	1	chr16	16685042	16685122	LTR	RLTR9B	ERVK	chr16RLTR9B16684928	ProperStrand	1	1	-inf
chr17	35162620	35162655	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr4	145745108	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-7.2215
chr13	95330687	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr2	130276315	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	1	-3.0361
chr15	80734973	80735053	protein_coding	Tnrc6b	intron	ENSMUSG00000047888	ProperStrand	1	chr8	95587319	95587409	protein_coding	Ces1b	intron	ENSMUSG00000078964	NonProperStrand	2	1	-inf
chr10	128525527	128525544	LTR	RLTR19C	ERVK	chr10RLTR19C128525303	ProperStrand	1	chr5	35266216	35266236	protein_coding	A930005I04Rik	utr3	ENSMUSG00000051246	NonProperStrand	9	1	-inf
chr17	39846766	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	9570558	9570648	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	8	1	-3.8005
chr2	121936076	121936166	protein_coding	Spg11	intron	ENSMUSG00000033396	NonProperStrand	3	chr11	74879819	74879899	protein_coding	Smg6	intron	ENSMUSG00000038290	NonProperStrand	3	1	-19.6922
chr17	61282053	61282133	LINE	Lx2B	L1	chr17Lx2B61281608	NonProperStrand	1	chr17	61282446	61282536	LINE	Lx3C	L1	chr17Lx3C61282249	ProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr2	158359851	158359881	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-7.8738
chr2	89528304	89528322	LINE	L1_Mm	L1	chr2L1_Mm89527548	NonProperStrand	3	chr17	39847194	39847253	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-7.5717
chr4	132309488	132309543	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr9	115187278	115187294	protein_coding	Stt3b	intron	ENSMUSG00000032437	NonProperStrand	2	1	-9.7441
chr2	131405005	131405085	LINE	Lx9	L1	chr2Lx9131403956	ProperStrand	1	chr2	131405437	131405527	LTR	MTB	MaLR	chr2MTB131405385	ProperStrand	1	1	-inf
chr11	109011796	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	64751944	64751961	LINE	L2a	L2	chr12L2a64751909	ProperStrand	1	1	-inf
chr2	52286056	52286072	lincRNA	A430018G15Rik	intron	ENSMUSG00000085315	ProperStrand	1	chr7	109520119	109520197	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-inf
chr6	62787225	62787315	DNA	Charlie4a	MER1_type	chr6Charlie4a62787244	NonProperStrand	1	chr6	62787097	62787177	LTR	ORR1C2	MaLR	chr6ORR1C262786842	ProperStrand	1	1	-inf
chr2	22744878	22744917	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr12	58761969	58761987	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	1	-10.0880
chrX	44066818	44066898	LINE	L1VL4	L1	chrXL1VL444066802	ProperStrand	3	chrX	44066607	44066698	LINE	Lx2	L1	chrXLx244065506	ProperStrand	3	3	-inf
chr2	73896725	73896815	DNA	URR1A	MER1_type	chr2URR1A73896597	ProperStrand	1	chr2	73896372	73896452	LTR	ORR1D1	MaLR	chr2ORR1D173896320	NonProperStrand	1	1	-inf
chr15	8561249	8561329	LTR	ERVL-int	ERVL	chr15ERVL-int8561269	NonProperStrand	1	chr15	8561144	8561234	LTR	MTB	MaLR	chr15MTB8560912	ProperStrand	1	1	-inf
chr14	75972538	75972586	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr11	106501273	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-7.4906
chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	chr16	19883802	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-4.9754
chr17	39847610	39847641	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	107532259	107532280	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	9	1	-3.0808
chr15	98519715	98519753	LTR	ORR1C1	MaLR	chr15ORR1C198519301	ProperStrand	11	chr8	70895758	70895873	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-7.2077
chr13	54390313	54390393	SINE	B4	B4	chr13B454390275	ProperStrand	1	chr13	54390158	54390248	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n54390068	NonProperStrand	1	1	-inf
chr6	35398314	35398331	LINE	L1Md_T	L1	chr6L1Md_T35396261	ProperStrand	3	chr7	109520119	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-9.6724
chr15	64334904	64334922	LINE	Lx6	L1	chr15Lx664334905	ProperStrand	3	chr16	23110839	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr2	23910506	23910595	LINE	L1VL1	L1	chr2L1VL123909064	ProperStrand	1	chr1	79607181	79607261	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	4	1	-inf
chr17	50920583	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr5	139272366	139272382	protein_coding	Fam20c	intron	ENSMUSG00000025854	NonProperStrand	2	1	-15.9877
chr17	35162615	35162655	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr15	85177753	85177789	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	1	-7.7187
chr7	130182730	130182820	LINE	L1ME3B	L1	chr7L1ME3B130182483	ProperStrand	1	chr7	130183007	130183087	SINE	B3	B2	chr7B3130182905	ProperStrand	1	1	-inf
chrX	37082924	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr13	44869594	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-3.6141
chr5	74093614	74093643	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	chr4	132309940	132310053	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-5.7826
chr1	122357188	122357230	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr15	80078528	80078587	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	1	-5.5648
chr10	23785399	23785431	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr16	23111375	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-3.4098
chr16	22284333	22284423	LTR	RMER3D-int	ERVK	chr16RMER3D-int22284335	NonProperStrand	1	chr16	22284642	22284722	SINE	B1_Mus1	Alu	chr16B1_Mus122284567	ProperStrand	1	1	-inf
chr2	102658768	102658784	protein_coding	Cd44	intron	ENSMUSG00000005087	NonProperStrand	2	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr7	31071303	31071319	protein_coding	Thap8	intron	ENSMUSG00000013928	ProperStrand	1	chr2	158358393	158358460	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-inf
chr17	39843654	39843680	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	chr6	142890364	142890454	protein_coding	St8sia1	intron	ENSMUSG00000030283	ProperStrand	6	1	-10.7199
chr5	72055174	72055254	LTR	MLT2D	ERVL	chr5MLT2D72055196	ProperStrand	1	chr5	72055454	72055544	SINE	B1_Mur1	Alu	chr5B1_Mur172055415	NonProperStrand	1	1	-inf
chr18	10052134	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-5.8703
chrX	68254794	68254874	LINE	Lx8	L1	chrXLx868254535	ProperStrand	1	chrX	68546194	68546284	protein_coding	Mtm1	intron	ENSMUSG00000031337	NonProperStrand	1	1	-inf
chr8	26928101	26928181	protein_coding-noncoding	Ash2l	utr3	ENSMUSG00000031575	ProperStrand	1	chr8	26927771	26927861	protein_coding	Ash2l	utr3	ENSMUSG00000031575	ProperStrand	1	1	-inf
chr16	90036560	90036581	protein_coding	Tiam1	intron	ENSMUSG00000002489	NonProperStrand	6	chr9	15313798	15313830	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-8.0943
chr9	63316782	63316862	lincRNA	Gm16759	intron	ENSMUSG00000086539	ProperStrand	4	chr9	54171317	54171407	protein_coding	Gldn	intron	ENSMUSG00000046167	ProperStrand	3	1	-18.9508
chr2	52524023	52524103	protein_coding	Cacnb4	intron	ENSMUSG00000017412	NonProperStrand	4	chr11	43502578	43502669	protein_coding	Pwwp2a	intron	ENSMUSG00000044950	ProperStrand	2	2	-inf
chr17	39847223	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr14	65917437	65917456	protein_coding	Fbxo16	intron	ENSMUSG00000034532	ProperStrand	1	1	-inf
chr2	90395129	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	27	-24.6192
chr17	71378149	71378240	protein_coding	Myom1	intron	ENSMUSG00000024049	NonProperStrand	2	chr4	48607307	48607330	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	7	1	-18.7795
chr16	23110382	23111380	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	90395129	90395190	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	32	-19.2977
chr4	132352443	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr2	154646580	154646600	protein_coding	Raly	intron	ENSMUSG00000027593	ProperStrand	3	1	-10.4236
chr5	110410375	110410455	LTR	ETnERV2-int	ERVK	chr5ETnERV2-int110410378	ProperStrand	1	chr5	110410515	110410605	LTR	RLTR9E	ERVK	chr5RLTR9E110410453	ProperStrand	1	1	-inf
chr4	132352441	132352833	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr5	114851973	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	6	-8.8534
chr17	39846769	39846840	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	62304856	62315446	protein_coding	Tet1	intron	ENSMUSG00000047146	ProperStrand	3	1	-5.9338
chr17	39847330	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr6	93894890	93894980	protein_coding	Magi1	intron	ENSMUSG00000045095	NonProperStrand	11	1	-9.4246
chr17	39844630	39844723	DNA	URR1A	MER1_type	chr17URR1A39844603	ProperStrand	12	chr17	39845197	39845236	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	43	1	-10.8579
chr11	72318489	72318506	protein_coding	Spns3	intron	ENSMUSG00000020798	NonProperStrand	2	chr7	109520168	109520193	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-10.7680
chr17	66372754	66372844	protein_coding-noncoding	Ankrd12	utr3	ENSMUSG00000034647	NonProperStrand	1	chr17	66372199	66372279	protein_coding	Ankrd12	intron	ENSMUSG00000034647	NonProperStrand	5	1	-inf
chr17	70963693	70963835	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr13	97190541	97190613	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	2	-5.7882
chr11	109011755	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr13	81678257	81682125	protein_coding-noncoding	Gpr98	utr3	ENSMUSG00000069170	NonProperStrand	1	1	-inf
chr9	19657749	19657829	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	chr16	24802531	24802623	protein_coding	Lpp	intron	ENSMUSG00000033306	NonProperStrand	26	1	-10.2871
chr16	10092140	10092230	LTR	MTA_Mm	MaLR	chr16MTA_Mm10091978	NonProperStrand	1	chr17	66120419	66120498	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	2	1	-inf
chr4	43492784	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr18	35557030	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-5.5051
chr4	43492785	43492885	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr13	97190548	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	2	-5.9317
chr13	114318859	114318939	LTR	MTD	MaLR	chr13MTD114318846	NonProperStrand	1	chr13	114318307	114318397	SINE	MIRb	MIR	chr13MIRb114318303	NonProperStrand	1	1	-inf
chr17	39847498	39847541	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	21041013	21041034	protein_coding	Hbs1l	intron	ENSMUSG00000019977	ProperStrand	2	1	-6.4812
chr11	99017063	99017141	SINE	B1_Mur3	Alu	chr11B1_Mur399017062	ProperStrand	6	chr4	132309940	132310015	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-7.0565
chr14	75847957	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr15	36138762	36138779	protein_coding	Spag1	intron	ENSMUSG00000037617	ProperStrand	2	1	-13.0444
chr1	122357169	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr7	110046444	110046476	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	1	-4.6882
chr12	94602890	94602980	LINE	L1_Mus2	L1	chr12L1_Mus294602818	NonProperStrand	1	chr12	113341688	113341767	SINE	B1_Mus2	Alu	chr12B1_Mus2113341683	ProperStrand	1	1	-inf
chrX	87238360	87238410	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr1	163779870	163779886	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	9	1	-9.9105
chr11	51407186	51407276	protein_coding-noncoding	Agxt2l2	utr5	ENSMUSG00000020359	ProperStrand	1	chr11	51407008	51407088	protein_coding	Agxt2l2	intron	ENSMUSG00000020359	ProperStrand	1	1	-inf
chr12	49007856	49007946	LINE	L1_Mus2	L1	chr12L1_Mus249007396	ProperStrand	1	chr12	49008049	49008129	SINE	B3	B2	chr12B349008070	ProperStrand	1	1	-inf
chr10	60732884	60732902	protein_coding	Adamts14	intron	ENSMUSG00000059901	NonProperStrand	4	chr16	23110845	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr15	58573494	58573584	protein_coding	Fer1l6	intron	ENSMUSG00000037106	NonProperStrand	6	chr15	58399625	58399705	protein_coding	Fer1l6	intron	ENSMUSG00000037106	ProperStrand	4	1	-17.3471
chr5	45644509	45644529	SINE	PB1D7	Alu	chr5PB1D745644500	ProperStrand	1	chr16	11144110	11144200	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-inf
chr11	97781675	97781747	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr9	15315199	15315268	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	2	-3.4932
chr10	33419035	33419125	LINE	L1_Mus2	L1	chr10L1_Mus233416056	NonProperStrand	1	chr13	17887655	17887735	protein_coding	Cdk13	intron	ENSMUSG00000041297	NonProperStrand	2	1	-inf
chr11	109012016	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr8	126944902	126944941	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-3.7929
chr17	39846455	39846480	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr12	78350926	78351026	protein_coding	Fut8	intron	ENSMUSG00000021065	NonProperStrand	2	1	-12.9931
chr7	103550797	103550887	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	17	chr14	33967736	33967816	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	1	-11.9088
chr1	84760848	84760880	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	4	chr8	70895758	70895879	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-9.4061
chr11	109011792	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	24528525	24528552	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	10	1	-3.6858
chr4	132309465	132310326	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr5	107905174	107907444	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	5	-6.7654
chr5	5092574	5092664	protein_coding-noncoding	Cdk14	utr3	ENSMUSG00000028926	ProperStrand	1	chr5	5092976	5093056	protein_coding	Cdk14	exon	ENSMUSG00000028926	ProperStrand	6	1	-inf
chr17	39847844	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	28810942	28811049	LTR	RLTR6-int	ERV1	chr7RLTR6-int28804798	NonProperStrand	1	1	-inf
chr11	6528086	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr7	109520119	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	3	-6.3615
chrX	101234767	101234847	LTR	RLTR17	ERVK	chrXRLTR17101234612	ProperStrand	1	chrX	101234424	101234514	LTR	RMER3D-int	ERVK	chrXRMER3D-int101234104	ProperStrand	1	1	-inf
chr5	52731187	52731267	LTR	MLT1F-int	MaLR	chr5MLT1F-int52731080	NonProperStrand	1	chr5	52731496	52731586	LTR	MLT1F	MaLR	chr5MLT1F52731388	NonProperStrand	1	1	-inf
chr7	65931726	65952998	protein_coding	Atp10a	intron	ENSMUSG00000025324	ProperStrand	2	chr5	76961483	76962430	protein_coding	Exoc1	intron	ENSMUSG00000036435	ProperStrand	4	1	-19.9190
chrX	102933826	102933843	LINE	L1Md_T	L1	chrXL1Md_T102931966	NonProperStrand	2	chr11	116843218	116843235	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-16.4050
chr15	93038930	93039020	LTR	MTD	MaLR	chr15MTD93038831	ProperStrand	1	chr15	93039081	93039161	LTR	MTD	MaLR	chr15MTD93039101	ProperStrand	1	1	-inf
chr9	14941035	14941125	DNA	Tigger7	MER2_type	chr9Tigger714940947	NonProperStrand	1	chr9	14941405	14941487	DNA	Tigger7	MER2_type	chr9Tigger714941327	NonProperStrand	1	1	-inf
chr5	107520558	107520648	LINE	L1M2	L1	chr5L1M2107520490	NonProperStrand	1	chr5	107520207	107520287	SINE	B4A	B4	chr5B4A107520220	NonProperStrand	1	1	-inf
chr3	130040840	130040871	protein_coding	Col25a1	intron	ENSMUSG00000058897	NonProperStrand	4	chr16	23110912	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr11	97781694	97781759	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr10	23785346	23785411	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	3	-4.6304
chr17	39846429	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	62171668	62171789	protein_coding	Ncor1	intron	ENSMUSG00000018501	NonProperStrand	6	1	-4.3847
chr11	55482757	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr4	56897679	56897757	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-6.8879
chr5	125036020	125036071	protein_coding	Gtf2h3	intron	ENSMUSG00000029387	NonProperStrand	1	chr2	122123775	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr3	22602174	22602254	LTR	RLTR10-int	ERVK	chr3RLTR10-int22601941	ProperStrand	1	chr3	22601707	22601797	LTR	RLTR10	ERVK	chr3RLTR1022601551	ProperStrand	1	1	-inf
chr1	161035399	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr6	5925761	5925780	antisense	1700019G24Rik	.	ENSMUSG00000085416	ProperStrand	1	1	-inf
chr17	64812064	64812144	LINE	L1Md_F	L1	chr17L1Md_F64807830	ProperStrand	1	chr8	96321239	96321329	lincRNA	Gm16615	intron	ENSMUSG00000085210	ProperStrand	1	1	-inf
chr16	23110754	23111647	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	3	-4.3777
chr3	27199352	27199432	DNA	ORSL	Tip100	chr3ORSL27199308	ProperStrand	1	chr3	27199007	27199097	Low_complexity	CT-rich	Low_complexity	chr3CT-rich27198973	NonProperStrand	1	1	-inf
chr17	39846781	39846798	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	97003089	97003107	protein_coding	Lrrc4c	intron	ENSMUSG00000050587	NonProperStrand	9	1	-3.5690
chr18	56000850	56000940	LINE	L1Md_F3	L1	chr18L1Md_F356000644	NonProperStrand	1	chr18	53648309	53648389	protein_coding	Prdm6	intron	ENSMUSG00000069378	NonProperStrand	2	1	-inf
chr17	39847847	39847903	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	26610281	26610297	protein_coding	Il1rap	intron	ENSMUSG00000022514	NonProperStrand	4	1	-4.7422
chr5	110692047	110692147	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	chr17	24719680	24719740	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-5.8606
chr5	124006582	124006672	protein_coding	Vps33a	intron	ENSMUSG00000029434	NonProperStrand	5	chr8	75030004	75030022	protein_coding	Med26	intron	ENSMUSG00000045248	NonProperStrand	3	1	-18.4526
chr12	48408003	48408093	LINE	Lx4B	L1	chr12Lx4B48407916	ProperStrand	1	chr5	145889972	145890052	protein_coding	Arpc1b	utr3	ENSMUSG00000029622	ProperStrand	2	1	-inf
chrX	104131818	104131898	LINE	Lx6	L1	chrXLx6104131563	ProperStrand	1	chrX	104131460	104131550	SINE	MIRb	MIR	chrXMIRb104131359	ProperStrand	1	1	-inf
chr17	39846470	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr7	4740128	4740149	protein_coding	2210411K11Rik	intron	ENSMUSG00000030431	ProperStrand	6	1	-4.3847
chr1	161036071	161036117	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	8	chr17	39847475	39847503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-3.3062
chr17	74493108	74493188	LINE	L1VL2	L1	chr17L1VL274492984	NonProperStrand	1	chr9	107022321	107022411	protein_coding	Dock3	intron	ENSMUSG00000039716	ProperStrand	3	1	-inf
chr17	39847659	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	153936392	153936411	protein_coding	Prdm16	intron	ENSMUSG00000039410	NonProperStrand	6	1	-3.8783
chr11	109011731	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	122246063	122246081	protein_coding	Fnbp1l	intron	ENSMUSG00000039735	NonProperStrand	2	1	-7.3577
chr5	149429976	149430000	LTR	MTD	MaLR	chr5MTD149429912	ProperStrand	1	chr2	90395156	90395176	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr1	5170738	5170754	LINE	Lx4B	L1	chr1Lx4B5169206	NonProperStrand	11	chr16	23110768	23110868	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-5.0462
chr10	111010300	111010321	LTR	MTC	MaLR	chr10MTC111010164	ProperStrand	1	chr17	39847923	39847945	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr13	44869576	44870019	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr8	126944848	126944937	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	4	-5.5028
chr6	54564625	54564705	protein_coding	Plekha8	intron	ENSMUSG00000005225	NonProperStrand	1	chr6	54471665	54471755	protein_coding	Scrn1	intron	ENSMUSG00000019124	ProperStrand	3	1	-inf
chr1	35952465	35952545	LTR	ORR1A2	MaLR	chr1ORR1A235952398	ProperStrand	1	chr1	35952051	35952141	LTR	RMER6C	ERVK	chr1RMER6C35951629	ProperStrand	1	1	-inf
chr16	23110414	23111427	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr12	87437678	87437787	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	3	-4.6870
chr8	45062274	45062355	LINE	L1Md_T	L1	chr8L1Md_T45057065	NonProperStrand	2	chr14	79862347	79862437	protein_coding	Wbp4	intron	ENSMUSG00000022023	ProperStrand	7	1	-18.7795
chr1	33791457	33791537	protein_coding-noncoding	Rab23	utr5	ENSMUSG00000004768	NonProperStrand	1	chr1	33791353	33791443	protein_coding	Rab23	intron	ENSMUSG00000004768	NonProperStrand	1	1	-inf
chrX	87238359	87238391	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr16	23110390	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	3	-3.8737
chr10	105238421	105238519	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	chr7	141984950	141985434	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-9.4788
chr10	95560964	95561009	LTR	RLTR15	ERVK	chr10RLTR1595560892	ProperStrand	1	chr17	39847108	39847208	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-inf
chr17	26353731	26353821	protein_coding-noncoding	Itfg3	utr3	ENSMUSG00000024187	NonProperStrand	1	chr17	26353565	26353645	protein_coding	Itfg3	exon	ENSMUSG00000024187	NonProperStrand	1	1	-inf
chr17	39846470	39846487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	56576413	56576437	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	2	1	-7.0123
chr9	98748727	98748807	SINE	B1_Mur4	Alu	chr9B1_Mur498748729	ProperStrand	1	chr5	30612025	30612115	protein_coding	Ccdc164	intron	ENSMUSG00000073102	NonProperStrand	3	1	-inf
chr11	109011749	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	71641634	71641659	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	11	1	-3.5018
chr10	40258543	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	ProperStrand	1	chr16	57391654	57391676	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-inf
chr8	104005689	104005779	LTR	MTD	MaLR	chr8MTD104005650	ProperStrand	1	chr8	104005889	104005969	LTR	MTD	MaLR	chr8MTD104005792	ProperStrand	1	1	-inf
chr18	10052132	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr15	91888156	91888172	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	7	1	-11.8216
chr11	109011797	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	25857433	25858749	protein_coding	Chtf18	intron	ENSMUSG00000019214	ProperStrand	1	1	-inf
chr11	6528086	6528166	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr5	150953040	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	2	-8.1880
chr17	39846526	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	30007921	30008121	SINE	B1_Mus2	Alu	chr2B1_Mus230007909	NonProperStrand	1	1	-inf
chr17	39847635	39847733	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr11	102815447	102815489	lincRNA	Gm17536	intron	ENSMUSG00000091056	ProperStrand	2	1	-13.4248
chr10	118714898	118714988	SINE	B2_Mm2	B2	chr10B2_Mm2118714892	NonProperStrand	1	chr10	118714724	118714804	SINE	MIR	MIR	chr10MIR118714639	NonProperStrand	1	1	-inf
chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	chr17	35993865	35993909	protein_coding	Mdc1	intron	ENSMUSG00000061607	ProperStrand	1	1	-inf
chr8	31149871	31149891	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	10	chr5	137747753	137747818	protein_coding	Srrt	intron	ENSMUSG00000037364	NonProperStrand	2	1	-18.0359
chr10	23785373	23785398	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr15	86194876	86194942	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-4.6122
chr5	115168639	115168728	protein_coding-noncoding	Tchp	utr5	ENSMUSG00000002486	NonProperStrand	1	chr5	115168822	115168902	protein_coding	Tchp	intron	ENSMUSG00000002486	NonProperStrand	2	1	-inf
chr11	109011747	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr13	95330598	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	13	-14.6330
chr13	99434356	99434436	LTR	ORR1B1	MaLR	chr13ORR1B199434081	ProperStrand	1	chr13	99434798	99434888	LTR	RLTR20D	ERVK	chr13RLTR20D99434784	NonProperStrand	1	1	-inf
chr10	24741367	24741447	LTR	MT2A	ERVL	chr10MT2A24741283	ProperStrand	1	chr10	24741701	24741791	LTR	ORR1B1	MaLR	chr10ORR1B124741623	ProperStrand	1	1	-inf
chr1	30942706	30942722	SINE	B3	B2	chr1B330942685	NonProperStrand	1	chr11	119038693	119038712	protein_coding	Tbc1d16	intron	ENSMUSG00000039976	ProperStrand	6	1	-inf
chr3	123507995	123508064	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr7	29388143	29397176	protein_coding	C330005M16Rik	intron	ENSMUSG00000037469	ProperStrand	2	1	-9.9469
chr17	39847248	39847305	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr5	118242981	118243892	protein_coding	Nos1	intron	ENSMUSG00000029361	ProperStrand	2	1	-14.2406
chr4	132310270	132310335	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr8	78506418	78506508	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	16	1	-5.0278
chr4	132352774	132352833	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr7	141448814	141448904	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	1	-4.2927
chr17	39846456	39846788	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	107905176	107907476	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	8	-3.2402
chr17	39847255	39847353	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	2	-3.9636
chr5	33519822	33519882	LINE	Lx	L1	chr5Lx33514994	NonProperStrand	1	chr17	39846746	39846846	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chrX	4136309	4136355	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	chr8	70895814	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-5.8925
chr17	55132298	55132378	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int55132291	NonProperStrand	1	chr17	55132038	55132128	LTR	RLTR10C	ERVK	chr17RLTR10C55131790	NonProperStrand	1	1	-inf
chr5	95958421	95958511	LTR	MTC	MaLR	chr5MTC95958432	ProperStrand	1	chr5	95958661	95958741	LTR	RMER5	ERV1	chr5RMER595958637	NonProperStrand	1	1	-inf
chr11	97781636	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	1	-5.8003
chr2	37580981	37581071	LTR	MT2B	ERVL	chr2MT2B37580935	ProperStrand	1	chr2	37581087	37581167	SINE	B3	B2	chr2B337581073	ProperStrand	1	1	-inf
chr11	5996961	5997051	SINE	B1_Mm	Alu	chr11B1_Mm5996946	ProperStrand	1	chr11	5997154	5997234	SINE	B4A	B4	chr11B4A5997132	ProperStrand	1	1	-inf
chr9	25544901	25544991	LINE	L1_Mus2	L1	chr9L1_Mus225544832	NonProperStrand	1	chr9	25544676	25544756	LTR	MER21B	ERV1	chr9MER21B25544635	NonProperStrand	1	1	-inf
chr14	124799528	124799547	protein_coding	Fgf14	intron	ENSMUSG00000025551	ProperStrand	5	chr17	24719675	24719729	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-10.0146
chr17	12922789	12922917	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	chr2	5379281	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	3	-6.5064
chr13	95330646	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr16	87418951	87419031	protein_coding	Ltn1	intron	ENSMUSG00000052299	ProperStrand	3	1	-12.1469
chr8	71909135	71909225	LINE	L1VL4	L1	chr8L1VL471909147	ProperStrand	2	chr8	71908796	71908876	LINE	Lx5	L1	chr8Lx571908761	ProperStrand	2	2	-inf
chr13	25850073	25850163	Low_complexity	C-rich	Low_complexity	chr13C-rich25850015	ProperStrand	1	chr13	25849940	25850020	Low_complexity	CT-rich	Low_complexity	chr13CT-rich25849856	ProperStrand	1	1	-inf
chr8	85065260	85065350	LTR	MLT2B2	ERVL	chr8MLT2B285065157	NonProperStrand	1	chr8	85065057	85065137	LTR	MTA_Mm	MaLR	chr8MTA_Mm85064761	NonProperStrand	1	1	-inf
chr16	23110390	23110451	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr11	117077249	117077349	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-3.6086
chr7	24852062	24852142	LINE	Lx6	L1	chr7Lx624851906	NonProperStrand	1	chr7	24851820	24851910	Other	RMER1C	Other	chr7RMER1C24851810	NonProperStrand	1	1	-inf
chr8	102937893	102937983	LINE	L1Md_F2	L1	chr8L1Md_F2102932837	ProperStrand	1	chr8	101897215	101897295	protein_coding	Cdh8	intron	ENSMUSG00000036510	NonProperStrand	2	1	-inf
chr12	78350926	78350987	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-7.4866
chr11	97781681	97781761	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr7	109520119	109520213	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	2	-3.4650
chr17	39847234	39847289	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr14	32416473	32416563	protein_coding	Hacl1	intron	ENSMUSG00000021884	ProperStrand	1	1	-inf
chrX	78012736	78012826	LINE	L1Md_A	L1	chrXL1Md_A78009418	ProperStrand	1	chr12	67667906	67667986	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr13	97190567	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr8	127421292	127421310	protein_coding	Exoc8	exon	ENSMUSG00000074030	ProperStrand	1	1	-inf
chr2	151038214	151038281	lincRNA	Gm14149	intron	ENSMUSG00000067352	NonProperStrand	1	chr9	123461821	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr6	3201463	3201543	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr17	34950953	34951002	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-6.1747
chr7	135935397	135935487	LTR	MTE2b	MaLR	chr7MTE2b135935269	NonProperStrand	1	chr7	135935121	135935201	SINE	B3A	B2	chr7B3A135935058	ProperStrand	1	1	-inf
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-3.6120
chr17	39847025	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	86985246	86985262	SINE	B3	B2	chr4B386985233	ProperStrand	5	1	-4.7701
chr18	5116068	5116982	protein_coding	Svil	exon	ENSMUSG00000024236	ProperStrand	5	chr4	132310304	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-7.4568
chr11	109012081	109012100	LTR	RMER17B	ERVK	chr11RMER17B109012078	NonProperStrand	4	mmu-miR-6240	2	17	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-11.8556
chr15	34440797	34440887	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr2	158356478	158356542	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-3.0360
chr17	39847070	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	116010059	116010277	protein_coding	Fbf1	intron	ENSMUSG00000020776	ProperStrand	2	1	-8.6616
chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	chr8	83931075	83931095	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	28	1	-12.3330
chr11	6620372	6620440	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr8	13876174	13876226	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-7.4248
chr11	97781638	97781746	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr14	75847923	75847945	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	2	-6.5560
chr11	109011748	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	111081796	111093118	LINE	L1_Mus3	L1	chr12L1_Mus3111092598	NonProperStrand	1	1	-inf
chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	chr2	158356479	158356541	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-7.7572
chr14	103537072	103537096	protein_coding-noncoding	Mycbp2	utr3	ENSMUSG00000033004	NonProperStrand	1	chr9	110281285	110281349	protein_coding	Scap	intron	ENSMUSG00000032485	NonProperStrand	6	1	-inf
chr4	111702882	111702962	LINE	L1_Mus2	L1	chr4L1_Mus2111702398	NonProperStrand	1	chr4	114541009	114541099	antisense	9130410C08Rik	.	ENSMUSG00000085323	ProperStrand	3	1	-inf
chr17	39847199	39847218	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr18	80295151	80295168	protein_coding	Pard6g	intron	ENSMUSG00000056214	ProperStrand	2	1	-8.6616
chr17	39846953	39846982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	127267478	127274719	pseudogene	Rdh18-ps	.	ENSMUSG00000054031	ProperStrand	2	1	-7.0123
chr3	123507996	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr12	105040471	105040529	pseudogene	Gm17043	.	ENSMUSG00000090466	NonProperStrand	1	1	-inf
chr2	26619363	26619443	LINE	L1Md_F2	L1	chr2L1Md_F226613003	NonProperStrand	1	chr2	26619601	26619691	LTR	RMER15	ERVL	chr2RMER1526619507	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr13	44869578	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	13	-10.6907
chrX	7867560	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	16	chrX	74272482	74272570	SINE	B3	B2	chrXB374272477	ProperStrand	54	1	-9.8024
chr10	23785345	23785429	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr2	25574771	25574830	LTR	RLTR6_Mm	ERV1	chr2RLTR6_Mm25574460	ProperStrand	1	1	-inf
chr4	86854725	86854791	protein_coding	Slc24a2	intron	ENSMUSG00000037996	ProperStrand	7	chr8	126944900	126944968	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-9.4637
chr19	44305880	44306001	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	4	chr2	130276263	130276296	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-9.6304
chr11	7775688	7775768	LINE	L1Md_A	L1	chr11L1Md_A7775062	NonProperStrand	1	chr11	62248688	62248778	protein_coding	Ncor1	intron	ENSMUSG00000018501	NonProperStrand	6	1	-inf
chr2	90395153	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr12	113999258	113999278	protein_coding	Pld4	intron	ENSMUSG00000052160	NonProperStrand	1	1	-inf
chr11	6398710	6399506	SINE	B2_Mm1t	B2	chr11B2_Mm1t6398680	NonProperStrand	1	chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr17	41152688	41152768	LTR	MTA_Mm	MaLR	chr17MTA_Mm41152629	NonProperStrand	1	chr17	41152502	41152592	SINE	B2_Mm2	B2	chr17B2_Mm241152408	ProperStrand	1	1	-inf
chr5	146261268	146261318	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-6.5414
chr11	97781637	97781746	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr4	132309463	132310320	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	4	-5.1392
chr17	39846818	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	31715474	31715492	protein_coding	Dlg1	intron	ENSMUSG00000022770	ProperStrand	3	1	-5.9338
chr11	109011745	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	37481424	37481455	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	7	1	-4.3977
chr8	83666660	83666742	LINE	L1Md_F	L1	chr8L1Md_F83665685	NonProperStrand	1	chr16	23111315	23111375	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr3	153579903	153579983	LTR	ORR1A4	MaLR	chr3ORR1A4153579861	ProperStrand	1	chr3	153579580	153579670	SINE	RSINE1	B4	chr3RSINE1153579566	ProperStrand	1	1	-inf
chr1	3301653	3301741	protein_coding	Xkr4	intron	ENSMUSG00000051951	NonProperStrand	5	chr1	3282376	3282456	protein_coding	Xkr4	intron	ENSMUSG00000051951	ProperStrand	5	1	-17.2429
chr17	39846716	39846806	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr5	146261141	146261198	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	ProperStrand	4	1	-11.2034
chr18	67526745	67526835	protein_coding	Cidea	intron	ENSMUSG00000024526	NonProperStrand	1	chr5	123687390	123687470	protein_coding	Psmd9	intron	ENSMUSG00000029440	ProperStrand	2	1	-inf
chr5	41745216	41745235	LTR	RMER17B	ERVK	chr5RMER17B41744413	ProperStrand	2	chr12	87437681	87437817	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	1	-13.9757
chr13	51900135	51900225	LTR	MTC	MaLR	chr13MTC51900111	ProperStrand	1	chr13	51899869	51899949	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n51899792	ProperStrand	1	1	-inf
chr1	19171800	19171880	LTR	MTD	MaLR	chr1MTD19171773	NonProperStrand	1	chr1	49908171	49908261	LTR	RLTR13D4	ERVK	chr1RLTR13D449907663	NonProperStrand	1	1	-inf
chr15	8685662	8685742	LTR	MTA_Mm	MaLR	chr15MTA_Mm8685487	NonProperStrand	1	chr15	8685360	8685450	LTR	MTB_Mm	MaLR	chr15MTB_Mm8685123	NonProperStrand	2	1	-inf
chr17	39848252	39848290	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	chr12	110691497	110691561	protein_coding	Dlk1	utr5	ENSMUSG00000040856	ProperStrand	2	1	-15.5193
chr2	13878866	13878911	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	3	chr17	39846453	39846472	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-5.9338
chr9	15316532	15316568	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	chr2	157060219	157060269	protein_coding	4922505G16Rik	intron	ENSMUSG00000074627	ProperStrand	3	1	-9.6947
chr17	39845757	39845847	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	201	chr2	22744846	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	1	-4.6251
chr17	39846816	39847078	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	17222210	17222241	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	6	2	-7.5914
chr8	114945314	114945414	DNA	URR1B	MER1_type	chr8URR1B114945206	NonProperStrand	3	chr8	114944884	114944914	Low_complexity	A-rich	Low_complexity	chr8A-rich114944808	ProperStrand	3	3	-inf
chr18	73163228	73163308	LINE	L1MA5	L1	chr18L1MA573163175	NonProperStrand	1	chr18	73162877	73162967	LTR	ORR1C1	MaLR	chr18ORR1C173162862	ProperStrand	1	1	-inf
chr13	84561845	84561865	LTR	IAPEz-int	ERVK	chr13IAPEz-int84561731	ProperStrand	1	chr17	39847443	39847468	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr2	131209605	131209685	LINE	L1M5	L1	chr2L1M5131209513	ProperStrand	1	chr2	131209727	131209817	LTR	MTD	MaLR	chr2MTD131209750	NonProperStrand	1	1	-inf
chr8	31149864	31149950	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	10	chr17	39848099	39848189	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-6.9748
chr17	39846200	39846288	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr11	69392907	69392924	protein_coding	Wrap53	intron	ENSMUSG00000041346	ProperStrand	1	1	-inf
chr13	44869577	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr2	5379274	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	11	-5.7641
chr15	30172499	30172517	protein_coding	Ctnnd2	intron	ENSMUSG00000022240	NonProperStrand	10	chr5	114852010	114852031	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-7.0357
chr2	32963312	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr3	88693990	88694029	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	8	1	-7.8960
chr16	23110390	23110453	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr4	106450106	106450123	protein_coding	Acot11	intron	ENSMUSG00000034853	ProperStrand	2	1	-8.9865
chr17	39847552	39847602	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	133907615	133907631	protein_coding	Mapk3	intron	ENSMUSG00000063065	ProperStrand	1	1	-inf
chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	chr2	158356420	158359930	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	2	-3.0809
chr6	37737929	37738019	LTR	MTC	MaLR	chr6MTC37737607	ProperStrand	1	chr6	37738120	37738200	LTR	RLTRETN_Mm	ERVK	chr6RLTRETN_Mm37738084	NonProperStrand	1	1	-inf
chr17	50420136	50420161	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr15	34440845	34440887	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-6.3950
chr8	58465178	58465258	protein_coding	Glra3	intron	ENSMUSG00000038257	ProperStrand	4	chr10	5903674	5903764	protein_coding	1700052N19Rik	intron	ENSMUSG00000061759	NonProperStrand	1	1	-inf
chr10	23785350	23785393	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr4	56897679	56897756	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-3.9089
chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	chr9	15315201	15315265	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-5.8080
chr12	99645573	99645656	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr7	109520233	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-4.0429
chr11	97781663	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr10	121603055	121603145	LINE	L1Md_A	L1	chr10L1Md_A121599362	NonProperStrand	3	2	-18.8852
chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	chr16	23110835	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-5.2564
chr4	5233212	5233232	LINE	L1Md_T	L1	chr4L1Md_T5232829	NonProperStrand	1	chr16	50408844	50408905	protein_coding	Bbx	intron	ENSMUSG00000022641	ProperStrand	5	1	-inf
chr17	39847736	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	46395057	46395126	protein_coding	Psd	intron	ENSMUSG00000037126	ProperStrand	1	1	-inf
chr12	40104980	40104996	LTR	ORR1A4	MaLR	chr12ORR1A440104939	ProperStrand	1	chr9	123462082	123462125	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr3	34162365	34162455	non_coding	Sox2ot	.	ENSMUSG00000090828	NonProperStrand	7	chr3	34298071	34298151	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	6	1	-16.0980
chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	5	chr4	145745109	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-13.3414
chr17	26786344	26786362	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	12	chr13	97190553	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.7641
chr18	44336099	44336179	LINE	Lx2B	L1	chr18Lx2B44336047	ProperStrand	1	chr18	44335865	44335955	SINE	B1_Mus2	Alu	chr18B1_Mus244335838	NonProperStrand	1	1	-inf
chr6	132397031	132397121	LINE	L1_Mm	L1	chr6L1_Mm132396692	NonProperStrand	2	chr6	132397426	132397506	LTR	RLTR18	ERVK	chr6RLTR18132397360	NonProperStrand	1	1	-inf
chr9	110281345	110281367	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	chrX	103672693	103672709	protein_coding	Fndc3c1	intron	ENSMUSG00000033737	NonProperStrand	5	1	-11.4909
chr7	29446502	29446574	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr17	24719718	24719740	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-6.8986
chr13	56479582	56479672	LINE	L1MA4A	L1	chr13L1MA4A56479535	NonProperStrand	1	chr13	56479468	56479548	SINE	RSINE1	B4	chr13RSINE156479413	NonProperStrand	1	1	-inf
chr17	39847636	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	25291266	25291320	SINE	ID_B1	B4	chr7ID_B125291274	ProperStrand	1	1	-inf
chr5	146261153	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr18	57879124	57879205	protein_coding	1700011I03Rik	intron	ENSMUSG00000058925	ProperStrand	4	1	-8.1425
chr17	39846472	39846817	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	96176406	96176482	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	2	-3.0738
chr17	39847326	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	45311745	45311766	LTR	MERVL_2A-int	ERVL	chr1MERVL_2A-int45311352	NonProperStrand	1	1	-inf
chr17	39846759	39846779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr19	13074964	13074982	SINE	B1_Mus1	Alu	chr19B1_Mus113074929	NonProperStrand	1	1	-inf
chr17	66580554	66580634	SINE	B4A	B4	chr17B4A66580563	ProperStrand	1	chr17	66580422	66580512	Simple_repeat	(TCC)n	Simple_repeat	chr17(TCC)n66580384	NonProperStrand	1	1	-inf
chr12	99645572	99645661	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr9	15313892	15313924	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-4.0638
chr18	3974080	3974170	LTR	IAP-d-int	ERVK	chr18IAP-d-int3973906	NonProperStrand	1	chr18	3973814	3973894	LTR	RLTR27	ERVK	chr18RLTR273973601	NonProperStrand	1	1	-inf
chr11	109011827	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	64296018	64296065	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	10	1	-3.6858
chr10	75317025	75317042	LTR	RMER21B	ERV1	chr10RMER21B75316996	ProperStrand	1	chr3	123507936	123507980	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-inf
chr10	126756524	126756604	SINE	B1_Mm	Alu	chr10B1_Mm126756483	NonProperStrand	1	chr10	126756325	126756415	SINE	B1_Mur3	Alu	chr10B1_Mur3126756313	ProperStrand	1	1	-inf
chr3	96176364	96176387	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr13	44869933	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-4.2251
chr17	39847903	39847973	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr15	76179776	76179850	protein_coding-noncoding	Sharpin	utr3	ENSMUSG00000022552	ProperStrand	8	1	-3.3062
chr11	109011748	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	4	-5.4174
chr15	91541491	91541571	protein_coding	Lrrk2	intron	ENSMUSG00000036273	NonProperStrand	3	chr14	75286057	75286147	protein_coding	Lrch1	intron	ENSMUSG00000068015	ProperStrand	1	1	-inf
chr10	23785346	23785370	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr1	90792432	90793070	Simple_repeat	(GGA)n	Simple_repeat	chr1(GGA)n90792940	NonProperStrand	2	2	-inf
chr12	110547993	110548015	LINE	Lx	L1	chr12Lx110546530	NonProperStrand	2	chr2	90395142	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-8.9527
chr4	132309475	132310067	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr5	121205007	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	6	-4.4082
chr1	23553718	23553808	LTR	RLTR18	ERVK	chr1RLTR1823553339	NonProperStrand	1	chr2	142174980	142175060	protein_coding	Macrod2	intron	ENSMUSG00000068205	ProperStrand	8	1	-inf
chr1	122357168	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr2	90395129	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	8	-10.9491
chr17	39846352	39847119	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	23110833	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	44	-4.7167
chr11	109011791	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	159340310	159340363	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	8	1	-4.1268
chr1	104706506	104706596	LTR	LTRIS_Mus	ERV1	chr1LTRIS_Mus104706487	ProperStrand	1	chr1	104706401	104706481	LTR	MuRRS-int	ERV1	chr1MuRRS-int104705373	ProperStrand	1	1	-inf
mmu-miR-1912-5p	2	17	miRNA	mmu-miR-1912-5p	.	mmu-miR-1912-5p	NonProperStrand	9	chr5	121205019	121205088	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-7.4510
chr5	121205015	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr5	107905176	107907462	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	2	-3.7289
chr2	90395137	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr14	14739837	14739854	protein_coding	Gm281	intron	ENSMUSG00000084902	ProperStrand	2	1	-8.9527
chr10	105238495	105238519	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	chr11	121336985	121337025	protein_coding	Tbcd	intron	ENSMUSG00000039230	NonProperStrand	1	1	-inf
chr5	117489539	117489619	SINE	B4	B4	chr5B4117489527	NonProperStrand	1	chr5	117489374	117489464	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n117489349	NonProperStrand	1	1	-inf
chr3	123507988	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr5	146261266	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	3	-8.5788
chr11	53706709	53706789	LTR	MTEa	MaLR	chr11MTEa53706635	ProperStrand	1	chr11	53706487	53706577	SINE	PB1D10	Alu	chr11PB1D1053706504	ProperStrand	1	1	-inf
chr3	32130444	32130534	SINE	ID_B1	B4	chr3ID_B132130316	ProperStrand	1	chr3	32130692	32130772	Simple_repeat	(GGGAGA)n	Simple_repeat	chr3(GGGAGA)n32130605	NonProperStrand	1	1	-inf
chr8	116641440	116641516	LINE	Lx8	L1	chr8Lx8116641447	NonProperStrand	1	chr17	39846373	39846439	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr18	43229299	43229379	LINE	L1MA9	L1	chr18L1MA943229225	NonProperStrand	1	chr18	43229446	43229536	LINE	Lx2B	L1	chr18Lx2B43229384	NonProperStrand	1	1	-inf
chr17	39846750	39846791	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr19	4233339	4233429	protein_coding	Pold4	utr3	ENSMUSG00000024854	NonProperStrand	1	1	-inf
chr14	21501058	21501077	protein_coding	Sec24c	intron	ENSMUSG00000039367	ProperStrand	1	chr16	23110914	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr14	63528259	63528276	protein_coding	Wdfy2	intron	ENSMUSG00000014547	NonProperStrand	3	chr11	120572984	120573061	protein_coding	Stra13	intron	ENSMUSG00000025144	ProperStrand	1	1	-inf
chr17	39847493	39847593	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr4	24628597	24628623	protein_coding	Klhl32	intron	ENSMUSG00000040387	NonProperStrand	5	1	-11.1246
chr4	86621386	86621476	LINE	Lx7	L1	chr4Lx786621384	ProperStrand	1	chr4	86621158	86621239	LTR	RLTR18B	ERVK	chr4RLTR18B86620709	ProperStrand	1	1	-inf
chr2	144936176	144936266	SINE	PB1D10	Alu	chr2PB1D10144936189	ProperStrand	1	chr2	144936353	144936433	SINE	PB1D9	Alu	chr2PB1D9144936311	ProperStrand	1	1	-inf
chr11	106501295	106501324	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr16	24971851	24971915	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	15	1	-7.3492
chr11	113901597	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	chr7	30564788	30565100	protein_coding	Zfp84	utr3	ENSMUSG00000046185	NonProperStrand	1	1	-inf
chr5	114851976	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr1	152567427	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	13	1	-6.4945
chr8	19544268	19544293	Low_complexity	GA-rich	Low_complexity	chr8GA-rich19544233	NonProperStrand	1	chr16	23110398	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr11	106483146	106483164	Simple_repeat	(TC)n	Simple_repeat	chr11(TC)n106483115	ProperStrand	1	chr16	23110865	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr7	141448816	141448864	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr7	98351132	98351180	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	32	1	-8.3175
chr1	122357190	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr11	120578814	120578867	protein_coding	Lrrc45	intron	ENSMUSG00000025145	NonProperStrand	5	1	-10.5474
chr9	106022982	106023062	LTR	RLTR18	ERVK	chr9RLTR18106022809	NonProperStrand	1	chr9	106023130	106023220	SINE	B3	B2	chr9B3106023103	NonProperStrand	1	1	-inf
chr8	3625508	3625525	protein_coding	Pcp2	utr5	ENSMUSG00000004630	NonProperStrand	1	chr10	84427395	84427493	protein_coding	Ric8b	intron	ENSMUSG00000035620	ProperStrand	1	1	-inf
chr14	55815227	55815307	LINE	L1MC	L1	chr14L1MC55815205	ProperStrand	1	chr14	55815098	55815188	LTR	MLT1A	MaLR	chr14MLT1A55814816	NonProperStrand	1	1	-inf
chr2	90395146	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	31072670	31072838	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	7	1	-5.9461
chr13	40870798	40870831	LTR	ORR1A3-int	MaLR	chr13ORR1A3-int40870433	NonProperStrand	1	chr13	40868838	40868938	LTR	ORR1A3	MaLR	chr13ORR1A340868866	ProperStrand	1	1	-inf
chr8	50765371	50765461	DNA	Kanga1	Tc2	chr8Kanga150765172	NonProperStrand	1	chr8	50980550	50980630	SINE	RSINE1	B4	chr8RSINE150980506	NonProperStrand	1	1	-inf
chr7	144433483	144433617	protein_coding	Ebf3	intron	ENSMUSG00000010476	NonProperStrand	6	chr5	143191378	143191399	protein_coding	Slc29a4	intron	ENSMUSG00000050822	ProperStrand	3	1	-18.0454
chr18	33361557	33361637	protein_coding	Stard4	utr3	ENSMUSG00000024378	NonProperStrand	1	chr18	33158460	33158550	protein_coding	Camk4	intron	ENSMUSG00000038128	ProperStrand	1	1	-inf
chr5	146261121	146261210	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	ProperStrand	4	chr15	76179456	76179537	protein_coding-noncoding	Sharpin	utr3	ENSMUSG00000022552	NonProperStrand	1	1	-inf
chr14	75847926	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-4.8554
chr14	55540459	55540475	protein_coding	Efs	intron	ENSMUSG00000022203	ProperStrand	8	chr13	44869934	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.6679
chr13	49569458	49569563	protein_coding	Cenpp	intron	ENSMUSG00000021391	ProperStrand	2	chr6	29834667	29834709	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	ProperStrand	2	1	-21.5566
chr1	167715880	167715970	processed_transcript	Gm16565	.	ENSMUSG00000089829	NonProperStrand	1	chr1	167716006	167716086	rRNA	5S_rRNA	.	ENSMUSG00000088618	ProperStrand	1	1	-inf
chr5	142511653	142511678	protein_coding	Sdk1	intron	ENSMUSG00000039683	NonProperStrand	12	chr1	159340405	159340423	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	8	1	-14.3283
chr7	93995284	93995302	LINE	L1Md_T	L1	chr7L1Md_T93994338	ProperStrand	5	chr5	146261278	146261336	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	1	-10.8152
chr9	41609049	41609070	Simple_repeat	(GAAA)n	Simple_repeat	chr9(GAAA)n41608986	ProperStrand	1	chr9	123461935	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr11	3158043	3158133	protein_coding-noncoding	Drg1	utr3	ENSMUSG00000020457	ProperStrand	1	chr11	3144507	3144587	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	11	1	-inf
chr1	161036071	161036107	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	8	chr2	104760588	104762832	protein_coding	Ccdc73	intron	ENSMUSG00000045106	NonProperStrand	6	1	-15.8086
chr9	7244998	7245088	LTR	MTEa	MaLR	chr9MTEa7244929	ProperStrand	1	chr9	7245190	7245270	SINE	B1_Mus1	Alu	chr9B1_Mus17245210	ProperStrand	1	1	-inf
chr1	132017856	132017936	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	21	chr1	132097572	132097662	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-8.9038
chr3	103074638	103074728	LTR	MurERV4_19-int	ERVK	chr3MurERV4_19-int103074547	NonProperStrand	1	chr3	103074164	103074244	SINE	B2_Mm1t	B2	chr3B2_Mm1t103074128	ProperStrand	1	1	-inf
chr7	100629863	100629884	LINE	Lx7	L1	chr7Lx7100629435	ProperStrand	7	chr2	5379308	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-6.4615
chr17	38784653	38784733	LINE	L1_Mus2	L1	chr17L1_Mus238784618	NonProperStrand	1	chr17	38784815	38784906	LINE	Lx3A	L1	chr17Lx3A38784753	ProperStrand	1	1	-inf
chr3	62702266	62702346	LTR	MTA_Mm	MaLR	chr3MTA_Mm62702168	NonProperStrand	1	chr12	67667942	67668032	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr18	14859526	14859616	SINE	B2_Mm2	B2	chr18B2_Mm214859480	ProperStrand	1	chr6	27877774	27877854	protein_coding	Grm8	intron	ENSMUSG00000024211	NonProperStrand	7	1	-inf
chrX	79111767	79111857	LINE	L1Md_A	L1	chrXL1Md_A79108104	ProperStrand	1	chr10	122565918	122565998	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	9	1	-inf
chr11	109011792	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	35275679	35275697	protein_coding	Fam180a	intron	ENSMUSG00000047420	NonProperStrand	1	1	-inf
chr3	142688298	142688317	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr13	97190550	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-3.6195
chr4	132352957	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr5	4757513	4757570	protein_coding	Fzd1	exon	ENSMUSG00000044674	ProperStrand	4	1	-10.3408
chr17	39847165	39847233	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr9	14507933	14510239	antisense	Gm10706	.	ENSMUSG00000074508	ProperStrand	1	1	-inf
chr7	13028756	13028938	SINE	B4A	B4	chr7B4A13028817	ProperStrand	4	chr7	13028971	13029161	SINE	RSINE1	B4	chr7RSINE113029041	ProperStrand	4	4	-inf
chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	chr15	71794351	71794367	protein_coding	Col22a1	intron	ENSMUSG00000079022	NonProperStrand	5	1	-11.2766
chr2	90395137	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr13	97190541	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	15	-7.1819
chr16	20092311	20092401	SINE	B1F	Alu	chr16B1F20092290	NonProperStrand	1	chr16	20092450	20092530	SINE	B1F	Alu	chr16B1F20092406	NonProperStrand	1	1	-inf
chr17	39847615	39847646	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	80417212	80417315	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	6	1	-3.8783
chr11	6620328	6620440	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr16	18240750	18240796	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	1	-9.6842
chr17	39847894	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr4	107084635	107084652	protein_coding	Tmem48	intron	ENSMUSG00000028614	NonProperStrand	3	1	-12.3270
chr10	55157565	55157645	LINE	Lx4A	L1	chr10Lx4A55157044	ProperStrand	1	chr10	55157778	55157868	Simple_repeat	(GAA)n	Simple_repeat	chr10(GAA)n55157737	ProperStrand	1	1	-inf
chr13	97190552	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr8	13876103	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	2	-3.9480
chr12	87437792	87437811	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr13	95971752	95971772	protein_coding	Pde8b	intron	ENSMUSG00000021684	NonProperStrand	3	1	-12.8779
chr16	23110770	23111377	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr5	107905190	107907471	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	7	-8.0323
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr13	90099035	90099061	protein_coding	Xrcc4	intron	ENSMUSG00000021615	NonProperStrand	12	1	-11.3937
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chrX	87238369	87238409	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	1	-7.0691
chr18	54699137	54699216	Simple_repeat	(TGGA)n	Simple_repeat	chr18(TGGA)n54699160	NonProperStrand	4	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	13	1	-15.7003
chr17	39846953	39846986	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	80429689	80429709	protein_coding	Gng7	intron	ENSMUSG00000048240	ProperStrand	3	1	-5.9338
chr11	97781663	97781741	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr10	125415426	125415443	protein_coding	Lrig3	intron	ENSMUSG00000020105	ProperStrand	1	1	-inf
chr17	39847760	39847802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	22076023	22076090	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	4	1	-4.7422
chr12	80209386	80209416	LTR	RLTR14	ERV1	chr12RLTR1480209155	NonProperStrand	1	chr16	23110770	23110817	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr9	123461932	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr2	130276232	130276370	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	8	-3.6397
chrX	126327974	126328054	protein_coding	Diap2	intron	ENSMUSG00000034480	NonProperStrand	2	chr14	33967685	33967775	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	1	-16.0659
chr4	22504471	22504487	LINE	Lx5	L1	chr4Lx522504360	NonProperStrand	2	chr5	146261286	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	1	-13.1149
chr11	109011747	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	49692823	49692840	LINE	L1_Mur2	L1	chr7L1_Mur249692406	ProperStrand	1	1	-inf
chrX	103545967	103546047	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	NonProperStrand	7	chr8	41615030	41615120	protein_coding	Vps37a	intron	ENSMUSG00000031600	NonProperStrand	1	1	-inf
chr17	28167025	28167042	protein_coding	Anks1	intron	ENSMUSG00000024219	ProperStrand	5	chr3	96560804	96560833	protein_coding	Rnf115	intron	ENSMUSG00000028098	ProperStrand	2	1	-19.4797
chr14	75847937	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr17	24886306	24886323	LTR	RMER13A	ERVK	chr17RMER13A24886288	NonProperStrand	1	1	-inf
chr19	17406783	17406873	protein_coding-noncoding	Gcnt1	utr3	ENSMUSG00000038843	NonProperStrand	1	chr19	17406359	17406439	protein_coding	Gcnt1	intron	ENSMUSG00000038843	NonProperStrand	1	1	-inf
chr9	112321292	112321314	LINE	Lx3C	L1	chr9Lx3C112318203	ProperStrand	1	chr17	39847575	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chrX	15293492	15293582	LINE	L1_Mm	L1	chrXL1_Mm15292671	NonProperStrand	1	chr9	19657883	19657963	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	22	1	-inf
chr2	38424684	38424702	protein_coding	Nek6	intron	ENSMUSG00000026749	NonProperStrand	4	chr16	23110839	23110865	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr3	88944124	88944210	protein_coding	Pklr	intron	ENSMUSG00000041237	ProperStrand	1	chr5	113572152	113572199	protein_coding	2900026A02Rik	intron	ENSMUSG00000051339	NonProperStrand	1	1	-inf
chr1	178886309	178886389	protein_coding-noncoding	Sdccag8	utr5	ENSMUSG00000026504	ProperStrand	1	chr1	178886583	178886673	protein_coding	Sdccag8	intron	ENSMUSG00000026504	ProperStrand	2	1	-inf
chr12	16706123	16706140	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	chr5	44100798	44100814	protein_coding	Cc2d2a	intron	ENSMUSG00000039765	ProperStrand	4	1	-14.3544
chr19	24942235	24942284	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr3	123508021	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-4.8833
chr6	122845826	122845906	SINE	B4A	B4	chr6B4A122845681	NonProperStrand	1	chr6	122846044	122846134	SINE	ID4_	ID	chr6ID4_122846051	NonProperStrand	1	1	-inf
chr10	7629866	7629956	protein_coding-noncoding	Tab2	utr3	ENSMUSG00000015755	ProperStrand	1	chr10	7630323	7630403	protein_coding	Tab2	intron	ENSMUSG00000015755	ProperStrand	1	1	-inf
chr3	64130855	64130935	LINE	L1Md_F	L1	chr3L1Md_F64129805	ProperStrand	1	chr3	95832434	95832524	protein_coding	Vps45	intron	ENSMUSG00000015747	ProperStrand	1	1	-inf
chr8	78214069	78217918	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	8	chr5	121205007	121205106	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-7.6997
chr2	56055980	56056070	LINE	Lx6	L1	chr2Lx656055912	ProperStrand	1	chr12	67665450	67665530	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr2	90395137	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	120553008	120553957	protein_coding	Rims3	intron	ENSMUSG00000032890	ProperStrand	10	1	-5.2066
chr10	110569641	110569721	LINE	Lx8	L1	chr10Lx8110569412	NonProperStrand	1	chr10	110569814	110569904	SINE	B1_Mur4	Alu	chr10B1_Mur4110569808	ProperStrand	1	1	-inf
chr15	34440845	34440871	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr5	141983897	141983915	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	18	1	-6.8893
chr13	115478526	115478616	LTR	MTD	MaLR	chr13MTD115478268	NonProperStrand	1	chr13	115478723	115478803	LTR	RLTR14	ERV1	chr13RLTR14115478702	ProperStrand	1	1	-inf
chr12	99645567	99645657	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr17	35882045	35882488	lincRNA	Gm20442	intron	ENSMUSG00000092600	NonProperStrand	1	1	-inf
chr12	100296757	100296837	LTR	MTE-int	MaLR	chr12MTE-int100296510	NonProperStrand	1	chr12	100296853	100296943	LTR	MTE-int	MaLR	chr12MTE-int100296822	ProperStrand	1	1	-inf
chr11	109011746	109011768	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	9545452	9545523	protein_coding	Adhfe1	intron	ENSMUSG00000025911	ProperStrand	2	1	-7.3577
chr17	39847248	39847266	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr17	35138684	35139032	protein_coding	Vars	exon	ENSMUSG00000007029	NonProperStrand	3	1	-13.1429
chr6	27084654	27084744	LINE	Lx3A	L1	chr6Lx3A27079890	NonProperStrand	1	chr6	27084939	27085019	LINE	Lx3A	L1	chr6Lx3A27084926	NonProperStrand	1	1	-inf
chr17	39846580	39846692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr2	79721851	79721868	protein_coding	Pde1a	intron	ENSMUSG00000059173	ProperStrand	2	1	-12.9931
chr17	39847278	39847322	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr5	53213186	53213203	protein_coding	Zcchc4	utr3	ENSMUSG00000029179	NonProperStrand	7	1	-5.6609
chr17	39846656	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	80867459	80867476	protein_coding	Nfic	intron	ENSMUSG00000055053	ProperStrand	6	2	-7.5914
chr2	118702207	118702287	protein_coding-noncoding	Ivd	utr5	ENSMUSG00000027332	NonProperStrand	1	chr2	118701949	118702039	protein_coding	Ivd	intron	ENSMUSG00000027332	NonProperStrand	1	1	-inf
chr1	160256812	160256828	protein_coding	Fam5b	intron	ENSMUSG00000004031	ProperStrand	3	chr2	130276236	130276353	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-10.3214
chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	chr13	97190553	97190570	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-4.3106
chr5	146261163	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	104306854	104306873	protein_coding	Gab2	intron	ENSMUSG00000004508	NonProperStrand	4	1	-8.1425
chr1	172562099	172562115	LTR	ERVL-int	ERVL	chr1ERVL-int172561704	ProperStrand	5	chr10	127574430	127574972	protein_coding	Rbms2	intron	ENSMUSG00000040043	ProperStrand	6	1	-16.8376
chr5	134554242	134554332	LTR	ORR1E	MaLR	chr5ORR1E134554189	ProperStrand	1	chr2	153341580	153341660	protein_coding	8430427H17Rik	intron	ENSMUSG00000061411	ProperStrand	1	1	-inf
chr18	35557107	35557176	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr9	110281345	110281366	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-4.1195
chr15	59910569	59910659	SINE	B4	B4	chr15B459910364	ProperStrand	1	chr15	59910114	59910194	SINE	MIRb	MIR	chr15MIRb59910137	NonProperStrand	1	1	-inf
mmu-miR-1291	0	26	miRNA	mmu-miR-1291	.	mmu-miR-1291	ProperStrand	12	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-9.3947
chr8	96096314	96096336	Low_complexity	GA-rich	Low_complexity	chr8GA-rich96096280	ProperStrand	1	chr11	107489069	107491867	protein_coding	Helz	intron	ENSMUSG00000020721	NonProperStrand	9	1	-inf
chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr4	86803877	86803940	protein_coding	Slc24a2	intron	ENSMUSG00000037996	NonProperStrand	6	1	-10.2891
chr17	39848099	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr12	3238104	3241529	protein_coding	1700012B15Rik	utr3	ENSMUSG00000079179	NonProperStrand	1	1	-inf
chr7	144286745	144286762	protein_coding	Mgmt	intron	ENSMUSG00000054612	NonProperStrand	3	chr2	158359884	158359930	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-11.6723
chr4	142150981	142151006	LTR	MamGypLTR1a	Gypsy	chr4MamGypLTR1a142150825	NonProperStrand	1	chr17	45572931	45573021	lincRNA	B230354K17Rik	intron	ENSMUSG00000073393	NonProperStrand	5	1	-inf
chr17	39846353	39846370	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	175692463	175692483	protein_coding	Ifi204	intron	ENSMUSG00000073489	ProperStrand	1	1	-inf
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	54156798	54156830	protein_coding	Gldn	intron	ENSMUSG00000046167	ProperStrand	3	1	-6.2761
chr11	109011744	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	146260994	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	30	-10.2055
chrX	37084340	37084420	LINE	Lx3C	L1	chrXLx3C37083989	NonProperStrand	1	chrX	37085099	37085189	LTR	ORR1A0	MaLR	chrXORR1A037084952	ProperStrand	1	1	-inf
chr2	32963296	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr19	8888540	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	4	-4.8502
chr11	109011819	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	89739941	89786426	protein_coding	Adamtsl3	intron	ENSMUSG00000070469	NonProperStrand	4	1	-5.5999
chr11	69667864	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr2	32963313	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	4	-4.6589
chr16	35981607	35981638	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr8	123103043	123103090	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	13	1	-9.0561
chr9	120130415	120130449	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr3	14654681	14654698	protein_coding	Car13	intron	ENSMUSG00000027555	ProperStrand	3	1	-11.2767
chr3	26063625	26063705	LTR	MLT1D	MaLR	chr3MLT1D26063427	ProperStrand	1	chr3	26063909	26063999	SINE	B3	B2	chr3B326063891	ProperStrand	1	1	-inf
chr10	34810109	34810199	Simple_repeat	(TTCTCC)n	Simple_repeat	chr10(TTCTCC)n34810054	NonProperStrand	1	chr10	34810261	34810341	Simple_repeat	(TTCTCC)n	Simple_repeat	chr10(TTCTCC)n34810276	NonProperStrand	1	1	-inf
chr17	39847258	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr5	48390129	48390145	protein_coding	Slit2	intron	ENSMUSG00000031558	NonProperStrand	1	1	-inf
chr11	55395150	55395218	protein_coding	Glra1	intron	ENSMUSG00000000263	ProperStrand	7	chr5	107907382	107907431	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-9.4769
chr9	19657699	19657779	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	22	chr14	67979427	67979517	protein_coding	Ebf2	intron	ENSMUSG00000022053	ProperStrand	1	1	-inf
chr2	30822458	30822538	protein_coding-noncoding	Tor1a	utr3	ENSMUSG00000026849	NonProperStrand	1	chr2	30822652	30822742	protein_coding	Tor1a	exon	ENSMUSG00000026849	NonProperStrand	1	1	-inf
chr4	21572095	21572175	LINE	L1Md_F2	L1	chr4L1Md_F221567281	ProperStrand	1	chr4	21572529	21572619	LINE	L1Md_F2	L1	chr4L1Md_F221572229	ProperStrand	1	1	-inf
chr3	87458241	87458260	protein_coding	Arhgef11	intron	ENSMUSG00000041977	ProperStrand	2	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-10.2439
chr3	64043180	64043270	LINE	L1Md_A	L1	chr3L1Md_A64043176	NonProperStrand	1	chr3	64042961	64043041	LINE	Lx3C	L1	chr3Lx3C64041428	NonProperStrand	1	1	-inf
chr2	158625291	158625308	protein_coding	Dhx35	intron	ENSMUSG00000027655	NonProperStrand	6	chr2	158356479	158356542	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-10.0662
chr11	69667861	69669777	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr13	112578182	112578305	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	6	-5.4871
chr2	169269527	169269607	LTR	ORR1D2	MaLR	chr2ORR1D2169269521	ProperStrand	1	chr2	169269396	169269486	SINE	B4A	B4	chr2B4A169269376	ProperStrand	1	1	-inf
chrX	37082911	37083026	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr9	123461928	123462182	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	5	-5.4825
chr3	67612606	67612622	LINE	Lx7	L1	chr3Lx767612583	ProperStrand	7	chr5	24706504	24706522	protein_coding	Galntl5	intron	ENSMUSG00000028938	ProperStrand	2	1	-18.7768
chr2	56916492	56916582	DNA	MER2	MER2_type	chr2MER256916410	ProperStrand	1	chr2	56916678	56916758	SINE	ID4_	ID	chr2ID4_56916675	ProperStrand	1	1	-inf
chr9	123462005	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr6	112727213	112727303	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	6	1	-5.5993
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr16	23110771	23110799	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-6.9488
chr5	114852004	114852038	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr16	23111686	23111756	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	1	-5.1058
chr18	10052131	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	2	-5.5229
chr9	123461885	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr6	115807988	115808114	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	4	-3.8967
chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr11	74935432	74945532	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	2	1	-8.9527
chr8	126944901	126944953	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	chr15	71794351	71794368	protein_coding	Col22a1	intron	ENSMUSG00000079022	NonProperStrand	5	1	-10.2030
chr11	109011645	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	90395133	90395189	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	52	-17.9426
chr17	39847278	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	59076321	59076337	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	7	1	-5.6609
chr17	39847442	39848031	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	109520119	109521355	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	21	-3.5611
chr9	61972956	61973036	LTR	MTE2b	MaLR	chr9MTE2b61972730	NonProperStrand	1	chr9	62304948	62305038	protein_coding	Coro2b	intron	ENSMUSG00000041729	ProperStrand	3	1	-inf
chrX	74448516	74448561	LINE	L1Md_F2	L1	chrXL1Md_F274447992	NonProperStrand	1	mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	5	1	-inf
chr17	26223500	26223544	protein_coding	Decr2	intron	ENSMUSG00000036775	NonProperStrand	3	chr2	5379279	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-8.3841
chr14	61295354	61295375	protein_coding	Spata13	intron	ENSMUSG00000021990	ProperStrand	3	chr4	132310268	132310368	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-8.6506
chr17	4082632	4082713	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	chr9	91745445	91745535	LINE	L1Md_A	L1	chr9L1Md_A91744615	NonProperStrand	1	1	-inf
chr10	111987564	111987654	LINE	L1_Mm	L1	chr10L1_Mm111987489	ProperStrand	2	chr19	47817300	47817380	protein_coding	Wdr96	intron	ENSMUSG00000044948	NonProperStrand	4	1	-19.9190
chr5	114851987	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr16	24984418	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	1	-5.1058
chr17	28353835	28353855	protein_coding	Def6	intron	ENSMUSG00000002257	ProperStrand	3	chr15	76175188	76175277	protein_coding	Cyc1	intron	ENSMUSG00000022551	NonProperStrand	4	1	-18.9366
chr12	71152783	71154856	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	2	chr9	123461989	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr3	114240239	114240319	LINE	L1_Mus3	L1	chr3L1_Mus3114240013	NonProperStrand	1	chr3	114240352	114240442	LINE	L1_Mus3	L1	chr3L1_Mus3114240299	ProperStrand	1	1	-inf
chr19	36671748	36671828	protein_coding-noncoding	Hectd2	utr5	ENSMUSG00000041180	NonProperStrand	1	chr19	36671459	36671549	protein_coding	Hectd2	intron	ENSMUSG00000041180	NonProperStrand	2	1	-inf
chr1	39821024	39821115	LINE	Lx8	L1	chr1Lx839820378	NonProperStrand	1	chr1	12795472	12795552	protein_coding	Sulf1	intron	ENSMUSG00000016918	NonProperStrand	3	1	-inf
chr2	130276254	130276314	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr12	105031234	105031334	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-4.1962
chr10	30811176	30811214	LTR	IAPEz-int	ERVK	chr10IAPEz-int30808771	ProperStrand	1	chr16	23110400	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr5	41889657	41889747	LINE	L1M2	L1	chr5L1M241889563	NonProperStrand	1	chr5	41889847	41889927	SINE	B4	B4	chr5B441889780	NonProperStrand	1	1	-inf
chr13	53858721	53858739	LTR	MLT1A0	MaLR	chr13MLT1A053858662	NonProperStrand	3	chr11	99017030	99017057	Simple_repeat	(TTTTA)n	Simple_repeat	chr11(TTTTA)n99017012	NonProperStrand	2	1	-20.7434
chr10	23785346	23785371	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	1	-4.0083
chr17	39847389	39848074	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	121205007	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	22	-5.5262
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr2	130276254	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-5.2166
chr1	173540134	173540224	LINE	Lx	L1	chr1Lx173540037	ProperStrand	1	chr1	173539742	173539822	LTR	MTD	MaLR	chr1MTD173539721	ProperStrand	1	1	-inf
chr12	104751401	104751491	LTR	MLT1A1	MaLR	chr12MLT1A1104751424	NonProperStrand	1	chr12	104751188	104751268	SINE	B2_Mm2	B2	chr12B2_Mm2104751210	NonProperStrand	1	1	-inf
chr9	108054124	108054141	protein_coding	Bsn	intron	ENSMUSG00000032589	ProperStrand	3	chr5	121205007	121205091	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-9.9198
chr1	194880001	194880081	Low_complexity	GA-rich	Low_complexity	chr1GA-rich194879959	NonProperStrand	1	chr1	194879895	194879985	SINE	B1_Mur3	Alu	chr1B1_Mur3194879821	NonProperStrand	1	1	-inf
chr1	52435729	52435809	LINE	L1_Mus4	L1	chr1L1_Mus452435509	ProperStrand	1	chr6	72406221	72406311	LINE	Lx8	L1	chr6Lx872405816	NonProperStrand	1	1	-inf
chr2	119545137	119545227	protein_coding	Rtf1	intron	ENSMUSG00000027304	ProperStrand	2	chr2	119200217	119200297	protein_coding	Ino80	exon	ENSMUSG00000034154	ProperStrand	1	1	-inf
chr11	82943617	82943635	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	3	chr17	39848140	39848157	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-9.6614
chr16	32659082	32659172	protein_coding-noncoding	Tnk2	utr5	ENSMUSG00000022791	ProperStrand	6	chr16	32658986	32659066	protein_coding	Tnk2	intron	ENSMUSG00000022791	ProperStrand	8	6	-inf
chr8	61877541	61877558	LINE	Lx	L1	chr8Lx61877038	ProperStrand	1	chr1	151788879	151788900	protein_coding	Pla2g4a	intron	ENSMUSG00000056220	NonProperStrand	3	1	-inf
chr17	50420127	50420176	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr9	123462011	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	2	-5.1583
chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr19	8888540	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	2	-7.1302
chr3	125498059	125498139	LINE	L1Md_F2	L1	chr3L1Md_F2125498055	NonProperStrand	1	chr3	125497845	125497935	LTR	RMER19B	ERVK	chr3RMER19B125497196	NonProperStrand	1	1	-inf
chr5	40883618	40883708	LINE	Lx6	L1	chr5Lx640883450	NonProperStrand	1	chr5	40883815	40883895	SINE	B3A	B2	chr5B3A40883785	NonProperStrand	1	1	-inf
chr11	109011748	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	28757554	28758658	protein_coding	Zfp780b	intron	ENSMUSG00000063047	NonProperStrand	2	2	-inf
chr2	167307768	167307785	protein_coding	Spata2	utr3	ENSMUSG00000047030	ProperStrand	1	chr16	23110835	23110889	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr17	39846765	39846818	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr6	6558376	6558407	lincRNA	RP24-129K7.2	exon	ENSMUSG00000093675	ProperStrand	1	1	-inf
chr1	54638249	54638339	LTR	LTRIS3	ERV1	chr1LTRIS354638043	ProperStrand	1	chr1	54638537	54638617	LTR	RLTR20B3	ERVK	chr1RLTR20B354638558	NonProperStrand	1	1	-inf
chr17	39847458	39847905	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	141984949	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	4	-6.1714
chr13	51648198	51648292	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	chr5	148315310	148315326	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	5	1	-14.3006
chrX	87238396	87238423	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr9	110281290	110281319	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-5.4903
chrX	70346421	70346501	processed_transcript	Gm20455	.	ENSMUSG00000092255	NonProperStrand	1	chrX	70370394	70370484	protein_coding	Gm14685	intron	ENSMUSG00000067771	NonProperStrand	1	1	-inf
chr19	38682639	38682660	protein_coding	Plce1	intron	ENSMUSG00000024998	NonProperStrand	2	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-9.9953
chr4	89990433	89990523	DNA	Tigger7	MER2_type	chr4Tigger789990173	ProperStrand	1	chr4	89990547	89990627	DNA	Tigger7	MER2_type	chr4Tigger789990547	ProperStrand	1	1	-inf
chr17	28329060	28329156	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	3	chr2	90395157	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.8617
chr17	39846964	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr7	30352042	30352061	protein_coding	4930432E11Rik	intron	ENSMUSG00000046958	ProperStrand	1	1	-inf
chrX	143802555	143802635	LINE	Lx	L1	chrXLx143802127	ProperStrand	1	chrX	143802724	143802814	LINE	Lx7	L1	chrXLx7143802663	ProperStrand	1	1	-inf
chr17	39847675	39847972	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr14	52209785	52209894	pseudogene	Gm17174	.	ENSMUSG00000091036	ProperStrand	4	2	-8.3657
chr1	43676163	43676253	LINE	L1Md_F2	L1	chr1L1Md_F243675916	NonProperStrand	1	chr1	43675750	43675830	SINE	PB1D10	Alu	chr1PB1D1043675772	NonProperStrand	1	1	-inf
chr7	19006061	19006080	LINE	L1_Mus2	L1	chr7L1_Mus219002686	ProperStrand	4	chr3	79530750	79530766	protein_coding	Rxfp1	intron	ENSMUSG00000034009	ProperStrand	3	1	-18.9508
mmu-miR-6240	1	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr4	123291416	123291457	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-6.1759
chr13	44869934	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr11	120105812	120105892	protein_coding	Bahcc1	intron	ENSMUSG00000039741	NonProperStrand	3	1	-8.8788
chr5	146261120	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr1	89603033	89603050	protein_coding	Inpp5d	intron	ENSMUSG00000026288	ProperStrand	10	1	-6.1555
chr4	113682583	113682600	LINE	L1_Mm	L1	chr4L1_Mm113682558	ProperStrand	1	chr18	10052130	10052154	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	1	-inf
chr10	23785349	23785398	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr13	88429857	88429876	LINE	Lx	L1	chr13Lx88429198	ProperStrand	2	1	-10.3808
chr7	97359613	97359632	LTR	ORR1A2	MaLR	chr7ORR1A297359421	NonProperStrand	1	chr5	114852015	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-inf
chr13	64761979	64761996	LINE	L1Md_F2	L1	chr13L1Md_F264759099	ProperStrand	3	chr16	23110755	23110803	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-11.4444
chr16	23110396	23111362	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	2	-4.8064
chr11	61427864	61427881	LINE	Lx7	L1	chr11Lx761427784	ProperStrand	1	chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	7	1	-inf
chr16	20537761	20537851	protein_coding-noncoding	Ap2m1	utr5	ENSMUSG00000022841	ProperStrand	1	chr16	20537540	20537620	protein_coding	Ap2m1	intron	ENSMUSG00000022841	ProperStrand	2	1	-inf
chr9	3520413	3520493	LINE	Lx2	L1	chr9Lx23520200	ProperStrand	1	chr9	3520511	3520601	LINE	Lx2	L1	chr9Lx23520412	ProperStrand	1	1	-inf
chr11	109011748	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	65628048	65628064	protein_coding	Wdr19	intron	ENSMUSG00000037890	NonProperStrand	1	1	-inf
chr17	39846580	39846637	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr12	80176259	80177216	protein_coding	Plekhh1	intron	ENSMUSG00000060716	ProperStrand	2	1	-12.9931
chr10	51369213	51369303	LINE	L1MDa	L1	chr10L1MDa51369218	NonProperStrand	1	chr10	51369059	51369139	LINE	Lx6	L1	chr10Lx651367395	ProperStrand	1	1	-inf
chrX	72992111	72992133	lincRNA	4933407K13Rik	exon	ENSMUSG00000087396	NonProperStrand	7	chr8	70895758	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-8.1607
chr4	145745109	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	chr15	79641613	79641648	protein_coding	Cbx6	intron	ENSMUSG00000089715	ProperStrand	4	1	-13.8517
chr7	141448802	141448939	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr10	95894311	95894331	SINE	B4A	B4	chr10B4A95894312	ProperStrand	1	1	-inf
chr11	60909271	60909361	LINE	Lx8	L1	chr11Lx860909098	ProperStrand	1	chr11	60908961	60909041	LTR	RMER6C	ERVK	chr11RMER6C60908790	NonProperStrand	1	1	-inf
chr16	23110382	23111371	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr16	23110821	23110931	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	31	-14.8553
chr11	120065693	120065711	LINE	L1MC4	L1	chr11L1MC4120065552	ProperStrand	1	chr2	32963363	32963419	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	ProperStrand	3	chr16	57391523	57391606	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-14.7452
chr4	92314631	92314650	LINE	L1Md_F2	L1	chr4L1Md_F292311674	NonProperStrand	1	chr17	39843707	39843815	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	1	-inf
chr12	45195656	45195682	LINE	L1M4	L1	chr12L1M445195378	NonProperStrand	1	chr16	57391403	57391503	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-inf
chr18	33795210	33795295	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr17	39846594	39846702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	2	-3.2703
chr1	157641535	157641615	protein_coding-noncoding	Qsox1	utr3	ENSMUSG00000033684	NonProperStrand	1	chr1	157641719	157641809	protein_coding	Qsox1	intron	ENSMUSG00000033684	NonProperStrand	1	1	-inf
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	chr13	54190163	54190181	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	1	-9.3446
chr7	131312844	131312924	protein_coding	Hs3st4	intron	ENSMUSG00000078591	NonProperStrand	4	chr7	131278002	131278092	protein_coding	Hs3st4	intron	ENSMUSG00000078591	ProperStrand	3	1	-18.9508
chr17	39847477	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	29761205	29761222	protein_coding	Ahcyl2	intron	ENSMUSG00000029772	NonProperStrand	2	1	-6.4812
chr14	48628177	48628267	LTR	MLT1D	MaLR	chr14MLT1D48627910	ProperStrand	1	chr14	48628537	48628617	LTR	MTD	MaLR	chr14MTD48628300	NonProperStrand	1	1	-inf
chrX	87238364	87238412	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr9	123461876	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	5	-5.5351
chr17	39846469	39846498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	78181689	78181741	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	9	1	-3.5690
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr15	86194892	86195072	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	2	-7.1356
chr15	10140827	10140907	protein_coding	Prlr	intron	ENSMUSG00000005268	ProperStrand	5	chr15	10548237	10548327	protein_coding	Rai14	intron	ENSMUSG00000022246	ProperStrand	3	1	-18.4526
chr1	175782371	175782451	LINE	L1Md_F	L1	chr1L1Md_F175782305	NonProperStrand	1	chr1	175782168	175782258	Simple_repeat	(TAGA)n	Simple_repeat	chr1(TAGA)n175782177	NonProperStrand	1	1	-inf
chr3	101106061	101106141	LTR	RMER5	ERV1	chr3RMER5101105957	ProperStrand	1	chr3	101106262	101106352	LTR	RMER5	ERV1	chr3RMER5101106274	ProperStrand	1	1	-inf
chr18	34945970	34946519	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	3	chr16	23110840	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr4	91703790	91703870	LTR	ERVL-B4-int	ERVL	chr4ERVL-B4-int91703594	NonProperStrand	1	chr4	91704034	91704124	LTR	MTC	MaLR	chr4MTC91704055	ProperStrand	1	1	-inf
chr5	67104698	67104788	LINE	HAL1-3A_ME	L1	chr5HAL1-3A_ME67104649	ProperStrand	1	chr5	67104871	67104951	SINE	B3	B2	chr5B367104840	ProperStrand	1	1	-inf
chr5	12719188	12719278	LTR	MMETn-int	ERVK	chr5MMETn-int12718660	NonProperStrand	1	chr5	12719509	12719589	LTR	RLTR13D1	ERVK	chr5RLTR13D112719417	NonProperStrand	1	1	-inf
chr14	75847970	75847986	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr5	53998709	53998725	protein_coding	Rbpj	intron	ENSMUSG00000039191	ProperStrand	6	1	-10.3403
chr9	123462007	123462030	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr3	89263080	89263098	protein_coding	Pmvk	utr5	ENSMUSG00000027952	NonProperStrand	1	1	-inf
chr17	39846774	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	118485201	118485290	protein_coding	Rbfox3	intron	ENSMUSG00000025576	NonProperStrand	6	1	-4.3847
chr4	132352465	132352502	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-3.0604
chr17	39847443	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr14	122279612	122279631	protein_coding	Ubac2	intron	ENSMUSG00000041765	NonProperStrand	3	1	-5.4090
chr19	31847973	31848063	LINE	Lx5	L1	chr19Lx531847782	ProperStrand	1	chr19	31848243	31848323	LTR	RLTR31B_Mm	ERVK	chr19RLTR31B_Mm31848044	NonProperStrand	1	1	-inf
chr8	80129496	80129586	protein_coding	Tmem184c	intron	ENSMUSG00000031617	NonProperStrand	1	chr8	79800640	79800720	protein_coding	Arhgap10	intron	ENSMUSG00000037148	ProperStrand	9	1	-inf
chr15	98519731	98519749	LTR	ORR1C1	MaLR	chr15ORR1C198519301	ProperStrand	11	chr16	23110825	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.7386
chr11	61284189	61284206	Simple_repeat	(CACTA)n	Simple_repeat	chr11(CACTA)n61284066	ProperStrand	2	chr16	23110835	23110890	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-8.6674
chr10	23785349	23785398	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-5.4095
chr6	3201504	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr1	157136413	157136429	protein_coding	Xpr1	intron	ENSMUSG00000026469	NonProperStrand	1	1	-inf
chr14	53039442	53039522	LINE	Lx4B	L1	chr14Lx4B53039438	NonProperStrand	1	chr7	104647970	104648060	protein_coding	Ints4	intron	ENSMUSG00000025133	ProperStrand	1	1	-inf
chr11	106501242	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr5	121205053	121205142	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	2	-3.0606
chr18	10052131	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr5	107907356	107907476	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-5.5862
chr17	39848072	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	2	-7.1427
chr2	90395129	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr8	70895757	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	14	-13.2752
chr5	37172312	37172402	LTR	RLTRETN_Mm	ERVK	chr5RLTRETN_Mm37172276	NonProperStrand	1	chr5	33449985	33450065	protein_coding	Slc5a1	intron	ENSMUSG00000011034	ProperStrand	6	1	-inf
chr9	120020543	120020633	protein_coding-noncoding	Slc25a38	utr5	ENSMUSG00000032519	NonProperStrand	1	chr9	120020727	120020807	protein_coding	Slc25a38	intron	ENSMUSG00000032519	NonProperStrand	1	1	-inf
chr11	55482735	55482754	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr17	26786344	26786362	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	12	1	-9.2852
chr14	112495913	112495934	LINE	L1Md_T	L1	chr14L1Md_T112495662	ProperStrand	4	chr17	39847249	39847329	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	1	-12.4502
chr4	21469383	21469402	LTR	LTR52-int	ERVL	chr4LTR52-int21469267	NonProperStrand	1	chr4	132352506	132352528	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	1	-inf
chr15	34440828	34440922	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr16	23111398	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-4.8259
chr4	132352894	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	5	-6.4201
chr9	96711593	96711683	LINE	Lx8	L1	chr9Lx896711425	ProperStrand	1	chr9	96711890	96711970	SINE	B1_Mur3	Alu	chr9B1_Mur396711820	ProperStrand	1	1	-inf
chr11	6258957	6259047	SINE	B2_Mm1t	B2	chr11B2_Mm1t6258931	NonProperStrand	1	chr11	6259466	6259546	SINE	B2_Mm2	B2	chr11B2_Mm26259385	NonProperStrand	1	1	-inf
chr15	3754746	3754836	LINE	L1M3	L1	chr15L1M33754690	ProperStrand	1	chr7	5409543	5409623	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	4	1	-inf
chr10	37243795	37243875	LINE	L1Md_F3	L1	chr10L1Md_F337243475	ProperStrand	1	chr10	37244047	37244137	LINE	L1Md_F3	L1	chr10L1Md_F337243808	ProperStrand	1	1	-inf
chr8	84846280	84846318	LINE	L1Md_F2	L1	chr8L1Md_F284845460	NonProperStrand	2	chr11	78287959	78287976	protein_coding	Sarm1	utr3	ENSMUSG00000050132	NonProperStrand	1	1	-inf
chr11	69667876	69667930	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr11	75410134	75410199	protein_coding	Pitpna	intron	ENSMUSG00000017781	NonProperStrand	1	1	-inf
chr10	35805289	35805369	LINE	L1Md_F2	L1	chr10L1Md_F235804969	ProperStrand	1	chr10	35805675	35805765	LINE	L1_Mur3	L1	chr10L1_Mur335805618	ProperStrand	1	1	-inf
chr10	27477170	27477260	LINE	L1MA4A	L1	chr10L1MA4A27476729	ProperStrand	1	chr10	27477600	27477680	LINE	L1_Mus3	L1	chr10L1_Mus327477493	NonProperStrand	1	1	-inf
chr17	39847479	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	127343499	127343536	protein_coding	Crym	intron	ENSMUSG00000030905	ProperStrand	3	1	-5.4090
chr17	39846426	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr14	31119342	31119384	protein_coding	Cacna1d	intron	ENSMUSG00000015968	NonProperStrand	6	1	-4.3847
chr17	39846822	39846866	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	34433138	34433156	protein_coding	Gm11158	intron	ENSMUSG00000079617	NonProperStrand	5	1	-4.7701
chr7	65902870	65902950	LINE	L1MA5A	L1	chr7L1MA5A65902680	ProperStrand	1	chr7	65903351	65903442	Simple_repeat	(TC)n	Simple_repeat	chr7(TC)n65903340	ProperStrand	1	1	-inf
chr2	90941623	90954309	protein_coding	Sfpi1	intron	ENSMUSG00000002111	NonProperStrand	5	chr2	90946843	90949880	protein_coding	Sfpi1	intron	ENSMUSG00000002111	ProperStrand	2	2	-inf
chr3	123507993	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr13	95330598	95330739	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	3	-5.0718
chr18	35849247	35849323	protein_coding	Dnajc18	intron	ENSMUSG00000024350	NonProperStrand	1	chr19	53024900	53024969	protein_coding	Xpnpep1	intron	ENSMUSG00000025027	ProperStrand	3	1	-inf
chr4	125597107	125597187	lincRNA	2610028E06Rik	intron	ENSMUSG00000085562	NonProperStrand	2	chr4	125714866	125714956	protein_coding	Csf3r	exon	ENSMUSG00000028859	ProperStrand	27	1	-15.9886
chr2	49985669	49985759	protein_coding	Lypd6	intron	ENSMUSG00000050447	ProperStrand	3	chr2	70422700	70422780	protein_coding	Gad1	utr3	ENSMUSG00000070880	NonProperStrand	1	1	-inf
chr12	78862096	78866537	LTR	MLT1H	MaLR	chr12MLT1H78861987	ProperStrand	1	chr9	123462035	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr13	44869608	44870019	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr16	19883802	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	2	-3.2395
chr10	82955329	82955373	protein_coding	Aldh1l2	exon	ENSMUSG00000020256	ProperStrand	5	chr16	23110914	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.3911
chr1	173821481	173821561	LTR	RLTR45-int	ERVK	chr1RLTR45-int173821398	ProperStrand	1	chr1	173954615	173954705	protein_coding	Vangl2	intron	ENSMUSG00000026556	ProperStrand	1	1	-inf
chr4	33382121	33382229	LTR	ORR1B2	MaLR	chr4ORR1B233381986	NonProperStrand	1	chr1	164969081	164969101	protein_coding	4921528O07Rik	exon	ENSMUSG00000071890	NonProperStrand	1	1	-inf
chr9	120130448	120130505	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr6	115807973	115808073	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-4.0562
chr11	69669695	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr1	91423922	91423940	protein_coding	Agap1	intron	ENSMUSG00000055013	ProperStrand	6	1	-8.1566
chr15	43222986	43223066	LINE	L1_Mus2	L1	chr15L1_Mus243222975	ProperStrand	1	chr15	43223104	43223194	SINE	B3	B2	chr15B343223072	ProperStrand	1	1	-inf
chr8	70895758	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr8	13876173	13876226	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-3.3245
chr17	30058944	30059024	protein_coding	Mdga1	intron	ENSMUSG00000043557	NonProperStrand	5	chr17	30694113	30694203	protein_coding	Btbd9	intron	ENSMUSG00000062202	ProperStrand	8	1	-16.2145
chr6	3201517	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr7	127883356	127883446	protein_coding	Vwa3a	utr5	ENSMUSG00000030889	ProperStrand	3	1	-12.2249
chr5	146261024	146261045	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr10	94980140	94980157	protein_coding	Ube2n	intron	ENSMUSG00000074781	NonProperStrand	1	1	-inf
chr18	57354822	57354845	protein_coding	Megf10	intron	ENSMUSG00000024593	NonProperStrand	7	chr13	44869574	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.9510
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	14540917	14540937	LINE	Lx7	L1	chr6Lx714540734	ProperStrand	1	1	-inf
chr17	39846396	39846433	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	72920263	72920375	protein_coding-noncoding	Crtc1	utr3	ENSMUSG00000003575	ProperStrand	1	1	-inf
chr5	124865663	124865743	protein_coding	Sbno1	intron	ENSMUSG00000038095	NonProperStrand	2	chr8	106807871	106807961	protein_coding	Cmtm2a	intron	ENSMUSG00000074127	ProperStrand	1	1	-inf
chr18	68083617	68083707	LINE	L1MC1	L1	chr18L1MC168083637	NonProperStrand	1	chr18	68082957	68083037	LINE	L1Md_F2	L1	chr18L1Md_F268082722	NonProperStrand	1	1	-inf
chr17	24719790	24719809	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr2	29904063	29912574	protein_coding	Wdr34	intron	ENSMUSG00000039715	NonProperStrand	1	1	-inf
chr5	114852002	114852018	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr9	34607833	34607852	protein_coding	Kirrel3	intron	ENSMUSG00000032036	NonProperStrand	6	1	-8.1224
chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	chrX	36264150	36264167	protein_coding	6030498E09Rik	intron	ENSMUSG00000051361	NonProperStrand	2	1	-16.8156
chr14	75847903	75848009	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr16	23110835	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	4	-3.9752
chr17	39848099	39848147	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr16	35981617	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	2	-4.5586
chr8	92662189	92662279	LTR	MLT1G3	MaLR	chr8MLT1G392662006	ProperStrand	1	chr8	92662660	92662740	LTR	ORR1E	MaLR	chr8ORR1E92662492	NonProperStrand	1	1	-inf
chr10	95349075	95349165	LINE	L1M6	L1	chr10L1M695349098	NonProperStrand	1	chr10	95349392	95349472	LTR	ORR1A2	MaLR	chr10ORR1A295349303	NonProperStrand	1	1	-inf
chr2	131445281	131445371	LINE	L1MC4	L1	chr2L1MC4131445282	ProperStrand	1	chr2	131445445	131445525	LINE	L1MD	L1	chr2L1MD131445437	ProperStrand	1	1	-inf
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	chr7	109520119	109520147	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-5.5757
chr17	39847554	39847938	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	13	2	-4.3612
chr17	39846753	39846805	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	3692185	3692201	protein_coding	Ankib1	utr3	ENSMUSG00000040351	NonProperStrand	6	1	-4.3847
chr12	59134134	59134190	LINE	L1Md_F2	L1	chr12L1Md_F259133464	ProperStrand	3	chr17	39847744	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-5.4090
chr17	39846750	39846850	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	60554991	60555046	protein_coding	Top3a	intron	ENSMUSG00000002814	NonProperStrand	2	1	-7.0123
chr2	121308332	121308348	LINE	Lx2	L1	chr2Lx2121307384	NonProperStrand	5	chr1	189867899	189867916	protein_coding	Esrrg	intron	ENSMUSG00000026610	NonProperStrand	11	1	-15.5401
chr6	31809421	31809501	lincRNA	Gm13849	intron	ENSMUSG00000087379	NonProperStrand	3	chr16	43975850	43975940	protein_coding	Zdhhc23	intron	ENSMUSG00000036304	ProperStrand	1	1	-inf
chr8	70181176	70181204	LINE	L1Md_T	L1	chr8L1Md_T70177913	NonProperStrand	3	chr9	123461826	123461851	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	2	-12.3979
chr3	96176387	96176435	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr5	107905190	107905241	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-6.6858
chr7	100629868	100629884	LINE	Lx7	L1	chr7Lx7100629435	ProperStrand	7	chr18	35554565	35554587	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-9.0177
chr5	92451160	92451240	protein_coding	Cdkl2	exon	ENSMUSG00000029403	ProperStrand	1	chr5	92450881	92450971	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	17	1	-inf
chr9	123462153	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr5	141983897	141983915	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	18	1	-3.4041
chr6	25104596	25104676	LINE	L1Md_A	L1	chr6L1Md_A25103676	ProperStrand	1	chr6	52765937	52766027	protein_coding	Jazf1	intron	ENSMUSG00000063568	NonProperStrand	5	1	-inf
chr8	30561958	30562048	LINE	L1Md_F3	L1	chr8L1Md_F330561937	NonProperStrand	1	chr8	30561792	30561872	LTR	MTE2b	MaLR	chr8MTE2b30561626	ProperStrand	1	1	-inf
chr10	115206040	115206120	LINE	L1_Mus1	L1	chr10L1_Mus1115205565	NonProperStrand	1	chr10	115206182	115206272	LINE	L1_Mus1	L1	chr10L1_Mus1115206133	ProperStrand	1	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr18	46167516	46167544	LINE	L1Md_A	L1	chr18L1Md_A46163912	ProperStrand	1	1	-inf
chr8	106291905	106291985	LINE	Lx4A	L1	chr8Lx4A106291831	NonProperStrand	1	chr8	106292093	106292183	LINE	Lx4A	L1	chr8Lx4A106291831	ProperStrand	1	1	-inf
chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	chr17	24720771	24720797	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-7.4635
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr13	97190552	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-3.3790
chr17	34950980	34951002	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr9	15315187	15315268	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-3.7499
chr7	3332984	3333064	Low_complexity	G-rich	Low_complexity	chr7G-rich3332943	ProperStrand	1	chr7	3333089	3333179	protein_coding	Cacng7	utr5	ENSMUSG00000069806	ProperStrand	1	1	-inf
chr1	179218657	179218675	LINE	Lx2B	L1	chr1Lx2B179217618	ProperStrand	1	chr16	23110380	23110434	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	40801345	40801936	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	23	1	-3.5774
chr11	109011795	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	146794847	146794868	protein_coding	Cyp3a25	intron	ENSMUSG00000029630	ProperStrand	1	1	-inf
chr11	69667850	69667930	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr12	105031236	105031326	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-3.6698
chr7	47188568	47188648	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	13	chr5	29048794	29048884	lincRNA	9530036O11Rik	intron	ENSMUSG00000086663	NonProperStrand	13	1	-13.1374
chr11	109011748	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	24984418	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	2	-3.6069
chr3	123507936	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr13	44869597	44870029	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	7	-3.3505
chr17	39846586	39846650	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	33290175	33290192	protein_coding	Snx4	intron	ENSMUSG00000022808	ProperStrand	3	1	-5.9338
chr9	19657970	19658050	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	chr6	48799295	48799385	SINE	B3	B2	chr6B348799266	NonProperStrand	1	1	-inf
chr8	109732769	109732859	SINE	ID_B1	B4	chr8ID_B1109732707	ProperStrand	1	chr9	70453514	70453584	protein_coding	Fam63b	intron	ENSMUSG00000042444	ProperStrand	3	1	-inf
chr11	109011796	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	61180060	61180721	protein_coding	Fam190a	intron	ENSMUSG00000039578	ProperStrand	12	1	-3.3361
chr13	44869606	44869675	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr1	163779870	163779886	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	9	1	-6.4211
chr16	91651063	91651143	protein_coding	Son	intron	ENSMUSG00000022961	ProperStrand	1	chr16	91639043	91639133	protein_coding	Gart	intron	ENSMUSG00000022962	NonProperStrand	2	1	-inf
chr10	40258553	40258643	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	23	chr17	39843382	39843534	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	2	-12.6914
chr9	91005011	91005091	LINE	Lx8	L1	chr9Lx891004987	NonProperStrand	1	chr9	91004476	91004566	LTR	ORR1B1	MaLR	chr9ORR1B191004274	NonProperStrand	1	1	-inf
chr11	6528087	6528164	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr5	23852209	23852279	protein_coding	Kcnh2	intron	ENSMUSG00000038319	NonProperStrand	1	1	-inf
chr10	61055855	61055935	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n61055824	NonProperStrand	1	chr10	40121872	40121962	protein_coding	Cdk19	intron	ENSMUSG00000038481	NonProperStrand	1	1	-inf
chr1	23704872	23704962	LINE	L1Md_F	L1	chr1L1Md_F23704869	ProperStrand	1	chr1	23704726	23704806	LTR	RLTR1C	ERV1	chr1RLTR1C23704345	NonProperStrand	1	1	-inf
chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	chr19	8888577	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	5	-4.2005
chr19	3311528	3311618	LTR	ORR1B1	MaLR	chr19ORR1B13311302	ProperStrand	1	chr19	3311707	3311787	SINE	B1F2	Alu	chr19B1F23311709	ProperStrand	1	1	-inf
chr6	125344090	125344170	SINE	B2_Mm1t	B2	chr6B2_Mm1t125344064	NonProperStrand	1	chr6	125343929	125344019	SINE	B2_Mm2	B2	chr6B2_Mm2125343895	NonProperStrand	1	1	-inf
chr17	24719674	24719755	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr9	119169521	119169539	protein_coding	Oxsr1	intron	ENSMUSG00000036737	NonProperStrand	2	1	-12.3130
chr3	69353054	69353134	protein_coding-noncoding	Ppm1l	utr5	ENSMUSG00000027784	ProperStrand	1	chr3	69353382	69353472	protein_coding	Ppm1l	intron	ENSMUSG00000027784	ProperStrand	2	1	-inf
chr9	123461841	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr4	10986816	10986896	protein_coding	2310030N02Rik	intron	ENSMUSG00000050323	ProperStrand	1	1	-inf
chr10	81468113	81468203	LTR	ORR1A2-int	MaLR	chr10ORR1A2-int81467835	NonProperStrand	1	chr10	81467631	81467711	LTR	RLTR46	ERVK	chr10RLTR4681467500	NonProperStrand	1	1	-inf
chr2	29948992	29949195	protein_coding	Zdhhc12	exon	ENSMUSG00000015335	ProperStrand	1	chr2	167007857	167007947	protein_coding	Kcnb1	intron	ENSMUSG00000050556	NonProperStrand	2	1	-inf
chr10	122565904	122565984	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr13	118475151	118475241	protein_coding	Hcn1	intron	ENSMUSG00000021730	ProperStrand	8	1	-12.9852
chr5	122167796	122167876	antisense	Gm16552	.	ENSMUSG00000089729	ProperStrand	1	chr5	122167595	122167685	protein_coding	Atxn2	intron	ENSMUSG00000042605	NonProperStrand	4	1	-inf
chr8	79420388	79420411	lincRNA	Gm10649	intron	ENSMUSG00000074235	NonProperStrand	9	chr9	123462035	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-4.7558
chr14	75847947	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr5	146261281	146261300	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	1	-4.4154
chr9	61060131	61060150	SINE	B4A	B4	chr9B4A61060114	ProperStrand	1	chr1	132504428	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	13	1	-inf
chr8	31149872	31149952	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	10	chr9	120130414	120130504	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-8.5782
chr15	82130145	82130161	protein_coding	Wbp2nl	intron	ENSMUSG00000022455	ProperStrand	1	chr2	130276251	130276314	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-inf
chr17	39847669	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	64579195	64581905	SINE	RSINE1	B4	chr18RSINE164579137	ProperStrand	3	1	-5.4090
chr11	6620322	6620422	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr9	15315213	15315257	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-4.5007
chr17	39846378	39846416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	20675782	20675800	protein_coding	Ahi1	intron	ENSMUSG00000019986	ProperStrand	3	1	-5.9338
chr12	87437696	87437757	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr5	121205017	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-3.3308
chr5	110129594	110129674	LINE	L1_Mus4	L1	chr5L1_Mus4110129261	ProperStrand	1	chr11	106653626	106653716	protein_coding	Ccdc45	intron	ENSMUSG00000018372	ProperStrand	4	1	-inf
chr9	97200696	97200786	LTR	MLT1D	MaLR	chr9MLT1D97200640	NonProperStrand	1	chr9	97201116	97201196	LTR	MLT2B2	ERVL	chr9MLT2B297201022	ProperStrand	1	1	-inf
chr4	88004692	88004772	protein_coding	BC057079	intron	ENSMUSG00000038368	NonProperStrand	2	chr4	88011783	88011873	protein_coding	BC057079	intron	ENSMUSG00000038368	ProperStrand	2	1	-21.5566
chr1	171356819	171357960	LINE	L1Md_T	L1	chr1L1Md_T171356028	NonProperStrand	1	chr10	16921817	16921836	SINE	B1_Mur1	Alu	chr10B1_Mur116921820	NonProperStrand	1	1	-inf
chr4	136052569	136052654	protein_coding	Luzp1	intron	ENSMUSG00000001089	NonProperStrand	2	chr2	32963383	32963415	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-11.2136
chr8	85281396	85281415	LINE	L1Md_A	L1	chr8L1Md_A85281150	ProperStrand	1	chr5	121205007	121205139	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-inf
chr6	101762104	101762184	LINE	L1M3	L1	chr6L1M3101762020	NonProperStrand	1	chr6	101761843	101761933	SINE	B1_Mus2	Alu	chr6B1_Mus2101761808	NonProperStrand	1	1	-inf
chr1	161035423	161035451	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr11	69669715	69669761	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-4.6740
chr3	69143868	69143891	protein_coding	Ppm1l	intron	ENSMUSG00000027784	NonProperStrand	1	chr2	32963312	32963367	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-inf
chr11	69667864	69667915	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	1	-5.0650
chr17	39847441	39847973	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	15313801	15315322	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	23	-4.8583
chr18	35554490	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr13	97190547	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	3	-3.0657
chr3	123507966	123508024	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr9	65196571	65196614	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	4	1	-8.1644
chr11	62604511	62604533	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	5	chr17	39847767	39847816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-4.2576
chr17	39846589	39846772	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	173053024	173053043	protein_coding	1700009P17Rik	utr5	ENSMUSG00000026649	ProperStrand	5	2	-8.2619
chr5	146261160	146261189	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr1	132504430	132504447	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	13	1	-5.6194
chr17	48207844	48207924	SINE	B4	B4	chr17B448207815	ProperStrand	1	chr16	67066501	67066591	protein_coding	Cadm2	intron	ENSMUSG00000064115	ProperStrand	7	1	-inf
chr15	99397466	99397556	LTR	ORR1A4	MaLR	chr15ORR1A499397361	ProperStrand	2	chr15	99397164	99397244	LTR	RMER19A	ERVK	chr15RMER19A99396975	NonProperStrand	1	1	-inf
chr17	37421801	37421891	Simple_repeat	(TATG)n	Simple_repeat	chr17(TATG)n37421818	NonProperStrand	1	chr17	37422080	37422160	pseudogene	Olfr756-ps1	.	ENSMUSG00000092524	ProperStrand	1	1	-inf
chr2	34871310	34871400	protein_coding	Hc	intron	ENSMUSG00000026874	ProperStrand	3	chr2	34973354	34973434	protein_coding	Cep110	intron	ENSMUSG00000057110	ProperStrand	4	2	-22.7264
chr18	13972707	13972723	protein_coding	Zfp521	intron	ENSMUSG00000024420	NonProperStrand	8	chr13	8256872	8256889	protein_coding	Adarb2	intron	ENSMUSG00000052551	ProperStrand	8	1	-15.1857
chr13	46757237	46757327	LTR	RMER17B	ERVK	chr13RMER17B46756881	NonProperStrand	1	chr13	46757816	46757896	LTR	RMER19B	ERVK	chr13RMER19B46757781	ProperStrand	1	1	-inf
chr12	66081536	66081553	protein_coding	Fam179b	intron	ENSMUSG00000035614	NonProperStrand	2	chr1	72713654	72713673	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	4	1	-19.9190
chr5	116787705	116787785	LTR	MTA_Mm	MaLR	chr5MTA_Mm116787478	ProperStrand	1	chr5	116787880	116787970	LTR	RMER12	ERVK	chr5RMER12116787873	NonProperStrand	1	1	-inf
mmu-miR-1291	0	25	miRNA	mmu-miR-1291	.	mmu-miR-1291	ProperStrand	12	chr16	23110833	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.5650
chr15	80078554	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	2	-5.0314
chr2	56865494	56865574	LINE	L1ME3A	L1	chr2L1ME3A56865283	NonProperStrand	1	chr2	56865646	56865736	LINE	L1ME3A	L1	chr2L1ME3A56865623	NonProperStrand	1	1	-inf
chr18	14752021	14752101	LINE	L1_Mus3	L1	chr18L1_Mus314751368	NonProperStrand	1	chr18	14752448	14752538	LINE	L1_Mus3	L1	chr18L1_Mus314752350	NonProperStrand	3	1	-inf
chr17	39847278	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr12	76710130	76710146	SINE	B2_Mm2	B2	chr12B2_Mm276709961	NonProperStrand	1	1	-inf
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr10	13105879	13112520	protein_coding	Phactr2	intron	ENSMUSG00000062866	ProperStrand	1	1	-inf
chr17	24720770	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr2	158358395	158359921	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	4	-8.4284
chrX	123103877	123103895	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	8	chr13	49684379	49684433	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-11.7140
chr8	124860990	124861080	protein_coding	Zfpm1	exon	ENSMUSG00000049577	NonProperStrand	1	chr8	124861118	124861198	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	48	1	-inf
chrX	74272571	74272620	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr2	130276343	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	1	-4.2653
chr5	121205007	121205118	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr2	5379283	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	6	-3.7575
chr17	27422755	27422772	LTR	MERVL-int	ERVL	chr17MERVL-int27419022	NonProperStrand	2	chr16	23110837	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-8.6674
chr11	69669659	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr2	91596159	91596176	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	11	1	-6.8719
chr1	156615537	156615627	LINE	L1MA7	L1	chr1L1MA7156614725	ProperStrand	2	chr1	156615697	156615777	LINE	L1Md_F2	L1	chr1L1Md_F2156615712	ProperStrand	2	2	-inf
chr17	39847246	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr3	156550598	156550614	protein_coding	Negr1	intron	ENSMUSG00000040037	NonProperStrand	5	1	-6.3853
chr11	6528051	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr9	64175088	64175113	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	9	1	-9.5740
chr6	94997317	94997399	LINE	L1M4	L1	chr6L1M494997219	ProperStrand	1	chr6	94997433	94997523	LINE	L1MB7	L1	chr6L1MB794997410	ProperStrand	1	1	-inf
chr8	128804871	128804951	LTR	MT2A	ERVL	chr8MT2A128804727	ProperStrand	1	chr8	128805378	128805468	LTR	MTD	MaLR	chr8MTD128805296	NonProperStrand	1	1	-inf
chrX	34321771	34321851	LINE	L2a	L2	chrXL2a34321784	ProperStrand	1	chrX	34321626	34321716	LTR	ORR1D2	MaLR	chrXORR1D234321351	NonProperStrand	1	1	-inf
chr11	69669689	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr5	114851973	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	8	-10.3823
chr15	34440790	34440873	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr3	88503067	88503104	protein_coding	2810403A07Rik	intron	ENSMUSG00000028060	NonProperStrand	6	1	-9.1910
chr11	109011748	109011768	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	3692183	3692200	protein_coding	Ankib1	utr3	ENSMUSG00000040351	NonProperStrand	6	1	-4.7173
chr2	48434502	48434582	LINE	L1Md_T	L1	chr2L1Md_T48434398	NonProperStrand	1	chr2	48434274	48434364	LTR	MLT1A	MaLR	chr2MLT1A48434158	ProperStrand	1	1	-inf
chr16	23110017	23111647	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	149	chr13	97190549	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	3	-3.8257
chr5	70842489	70842569	LINE	L1Md_F2	L1	chr5L1Md_F270842505	NonProperStrand	1	chr5	70842200	70842290	LINE	Lx7	L1	chr5Lx770841842	NonProperStrand	1	1	-inf
chr11	69667833	69669727	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr5	121205007	121205116	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	5	-5.7794
chr5	30060639	30060729	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	8	chr14	33967531	33967611	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	1	-12.7350
chr4	117877618	117880872	SINE	B2_Mm2	B2	chr4B2_Mm2117877522	NonProperStrand	1	chr12	3572489	3572505	protein_coding	Dtnb	utr5	ENSMUSG00000071454	NonProperStrand	3	1	-inf
chr17	17140035	17140125	LINE	L1Md_F3	L1	chr17L1Md_F317139312	NonProperStrand	1	chr17	39847206	39847247	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	1	-inf
chr17	39846768	39846789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	57136730	57136803	protein_coding	Tomm70a	intron	ENSMUSG00000022752	ProperStrand	1	1	-inf
chr1	42458816	42458896	LINE	L1_Rod	L1	chr1L1_Rod42458616	ProperStrand	1	chr1	42458383	42458473	LTR	RMER19C	ERVK	chr1RMER19C42457882	NonProperStrand	1	1	-inf
chr6	13076771	13076851	LTR	MERVK26-int	ERVK	chr6MERVK26-int13075829	NonProperStrand	1	chr6	13077134	13077224	LTR	ORR1A4-int	MaLR	chr6ORR1A4-int13077047	ProperStrand	1	1	-inf
chr17	39847823	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	21218680	21218696	protein_coding	Tmem14a	intron	ENSMUSG00000025933	ProperStrand	2	1	-6.4812
chr14	65864034	65864114	protein_coding	Fzd3	intron	ENSMUSG00000007989	ProperStrand	4	chr12	41521307	41521397	protein_coding	Dock4	intron	ENSMUSG00000035954	NonProperStrand	3	1	-18.9508
chr9	120130470	120130491	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr4	123291433	123291474	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-4.9417
chr6	115808031	115808068	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr2	32963312	32963416	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-2.9961
chr13	40729950	40730030	LINE	Lx8	L1	chr13Lx840729239	ProperStrand	3	chr13	40730256	40730346	LINE	Lx8	L1	chr13Lx840730229	ProperStrand	3	3	-inf
chr18	35557042	35557108	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr8	70895758	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	2	-3.3690
chr5	129725488	129725578	SINE	B1_Mus1	Alu	chr5B1_Mus1129725509	NonProperStrand	1	chr5	129725387	129725467	SINE	B3A	B2	chr5B3A129725318	ProperStrand	1	1	-inf
chr9	120130415	120130563	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr13	97190546	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	4	-5.0991
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr2	118113135	118113158	protein_coding	Gpr176	intron	ENSMUSG00000040133	NonProperStrand	2	1	-9.9953
chr8	53681090	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr19	8888597	8888623	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-5.3885
chr1	191655202	191655292	protein_coding	Ptpn14	intron	ENSMUSG00000026604	NonProperStrand	2	chr3	58653530	58653610	protein_coding	Clrn1	intron	ENSMUSG00000043850	ProperStrand	1	1	-inf
chr11	51737837	51737879	SINE	B3	B2	chr11B351737669	NonProperStrand	6	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-7.3053
chr3	114439905	114439923	LINE	Lx3B	L1	chr3Lx3B114439740	NonProperStrand	1	chr16	23110755	23110866	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr8	27275316	27275369	LTR	RLTR11A	ERVK	chr8RLTR11A27274868	NonProperStrand	1	chr17	34950949	34951018	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-inf
chr16	23111666	23111756	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	149	chr5	107905190	107905270	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-3.3910
chr2	58083752	58083770	LINE	L1_Mus3	L1	chr2L1_Mus358081863	ProperStrand	7	chr2	90395146	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-5.9461
chr9	123462140	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr5	125133118	125133137	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	9	1	-4.7558
chr10	3657304	3657323	LTR	RLTR40	ERVK	chr10RLTR403656930	ProperStrand	2	chr13	97190550	97190571	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-9.9068
chrX	37082965	37083009	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr3	123507951	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	2	-3.5811
chr10	59603625	59603705	LTR	ORR1B2	MaLR	chr10ORR1B259603618	NonProperStrand	1	chr10	59603502	59603592	LTR	RMER15	ERVL	chr10RMER1559603423	NonProperStrand	1	1	-inf
chr16	57253927	57254007	LINE	L1MB3	L1	chr16L1MB357253831	NonProperStrand	1	chr16	57254053	57254142	SINE	B2_Mm1t	B2	chr16B2_Mm1t57254027	ProperStrand	1	1	-inf
chr11	109011646	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	132309465	132310328	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	38	-15.8480
chr13	62151764	62151844	Satellite	MMSAT4	Satellite	chr13MMSAT462150438	NonProperStrand	1	chr3	90058625	90061642	protein_coding	Crtc2	intron	ENSMUSG00000027936	NonProperStrand	1	1	-inf
chr16	24984418	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	chr5	3693225	3693241	protein_coding	Ankib1	exon	ENSMUSG00000040351	NonProperStrand	6	1	-13.3588
chr7	47188375	47188455	SINE	B3A	B2	chr7B3A47188341	ProperStrand	2	chrX	109769811	109769901	protein_coding	Pof1b	intron	ENSMUSG00000034607	NonProperStrand	1	1	-inf
chr13	44729321	44729401	LTR	ORR1C2	MaLR	chr13ORR1C244729168	ProperStrand	1	chr13	44729577	44729667	SINE	ID_B1	B4	chr13ID_B144729449	ProperStrand	1	1	-inf
chr13	9834319	9834418	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr9	15315223	15315280	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-6.0450
chr11	109011693	109011861	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	39848097	39848245	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	15	-3.7454
chr5	42409522	42409602	LINE	L1Md_F2	L1	chr5L1Md_F242409265	NonProperStrand	1	chr5	42409914	42410004	LINE	L2	L2	chr5L242409923	ProperStrand	1	1	-inf
chrX	115940517	115940597	LINE	L1_Mm	L1	chrXL1_Mm115940532	ProperStrand	1	chrX	115940385	115940475	LINE	L1_Mus2	L1	chrXL1_Mus2115937207	ProperStrand	1	1	-inf
chr11	97781662	97781742	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr11	117077290	117077380	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-7.0479
chr17	39847271	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr19	4613671	4613761	protein_coding	Lrfn4	exon	ENSMUSG00000045045	ProperStrand	1	1	-inf
chr17	39848100	39848200	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chrY	1278900	1278916	LTR	MMERVK10C-int	ERVK	chrYMMERVK10C-int1277474	NonProperStrand	1	1	-inf
chr13	95330598	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr8	88200420	88200436	protein_coding	Neto2	intron	ENSMUSG00000036902	ProperStrand	2	1	-13.2446
chr7	30551019	30551099	LTR	RMER13B	ERVK	chr7RMER13B30550429	ProperStrand	3	chr7	30551307	30551398	LTR	RMER21A	ERV1	chr7RMER21A30551257	ProperStrand	3	3	-inf
chr17	84699682	84699700	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	7	chr2	90395156	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-5.9461
chr17	4082170	4082260	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	chr13	50021473	50021553	LTR	MMETn-int	ERVK	chr13MMETn-int50020307	NonProperStrand	1	1	-inf
chr10	23785455	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr8	105280426	105280443	protein_coding	Cdh11	intron	ENSMUSG00000031673	ProperStrand	7	1	-7.3548
chr14	54898374	54898394	LTR	RLTR31_Mm	ERVK	chr14RLTR31_Mm54898346	ProperStrand	3	chr19	8888597	8888676	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-9.8520
chr8	123047347	123047437	protein_coding	Gse1	intron	ENSMUSG00000031822	NonProperStrand	3	chr8	123044818	123044898	protein_coding	Gse1	intron	ENSMUSG00000031822	ProperStrand	13	1	-16.3961
chr17	39848099	39848150	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr6	131380312	131380375	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	1	-5.0464
chr13	95330610	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr2	160907608	160907624	protein_coding	Chd6	intron	ENSMUSG00000057133	ProperStrand	8	1	-9.9177
chr17	39847813	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	120943841	120943941	protein_coding	Mical3	intron	ENSMUSG00000051586	ProperStrand	2	1	-6.4812
chr4	132352895	132352951	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chrX	72992111	72992132	lincRNA	4933407K13Rik	exon	ENSMUSG00000087396	NonProperStrand	7	1	-9.0926
chr4	97993236	97993260	antisense	0610025J13Rik	.	ENSMUSG00000046683	NonProperStrand	1	chr2	90395156	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	chr15	86194889	86194984	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-10.1336
chr11	69667883	69667972	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr13	49684325	49684377	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-4.1663
chr12	65420572	65420652	LINE	L1_Mus4	L1	chr12L1_Mus465420316	ProperStrand	1	chr12	65420811	65420901	LTR	RLTR40	ERVK	chr12RLTR4065420763	ProperStrand	1	1	-inf
chr2	167625885	167625965	Low_complexity	CT-rich	Low_complexity	chr2CT-rich167625832	NonProperStrand	1	chr12	85860005	85860095	protein_coding	Lin52	intron	ENSMUSG00000085793	ProperStrand	1	1	-inf
chr17	39847658	39847678	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	81182250	81182296	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	3	1	-5.4090
chr7	29446495	29446574	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chrX	74272500	74272566	SINE	B3	B2	chrXB374272477	ProperStrand	54	1	-9.1501
chr11	6528051	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr9	123461872	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	5	-4.7292
chr8	13416895	13416914	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	11	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-6.2722
chr11	109011728	109011747	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	122159327	122159344	SINE	B3	B2	chr7B3122159281	ProperStrand	1	1	-inf
chr14	123460952	123461042	LINE	L1_Mus3	L1	chr14L1_Mus3123460978	NonProperStrand	1	chr14	123460590	123460670	LTR	MTE2b	MaLR	chr14MTE2b123460550	ProperStrand	1	1	-inf
chr3	26321221	26321240	LINE	Lx3C	L1	chr3Lx3C26320485	NonProperStrand	1	chr18	35557155	35557176	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-inf
chr17	39847046	39847080	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	180256227	180256244	protein_coding	Hnrnpu	intron	ENSMUSG00000039630	NonProperStrand	2	1	-7.0123
chr4	43492785	43492850	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr17	24719728	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-5.7567
chr15	34440790	34440868	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr2	32963363	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	2	-3.1933
chr17	39847438	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	146260993	146261221	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	45	-13.3582
chr15	80078554	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr2	71089842	71089859	protein_coding	Dync1i2	intron	ENSMUSG00000027012	NonProperStrand	4	1	-12.7194
chr7	111070677	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	chr3	88693987	88694005	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	8	1	-12.0181
chr17	79446458	79446538	LINE	L1Md_T	L1	chr17L1Md_T79443441	ProperStrand	1	chr19	37221666	37221756	protein_coding	Cpeb3	intron	ENSMUSG00000039652	ProperStrand	1	1	-inf
chr5	52922282	52922372	Low_complexity	CT-rich	Low_complexity	chr5CT-rich52922235	NonProperStrand	2	chr5	52922416	52922496	SINE	B1_Mur1	Alu	chr5B1_Mur152922423	ProperStrand	2	2	-inf
chr3	115715176	115715194	protein_coding-noncoding	Extl2	utr5	ENSMUSG00000027963	NonProperStrand	1	chr16	4497144	4497160	protein_coding	Srl	exon	ENSMUSG00000022519	NonProperStrand	2	1	-inf
chr3	31458681	31458699	LINE	L1Md_F2	L1	chr3L1Md_F231458416	NonProperStrand	4	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-8.2126
chr6	115808022	115808102	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr7	127527913	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-7.8874
chr9	5002582	5002672	LINE	L1_Mm	L1	chr9L1_Mm5000000	NonProperStrand	1	chr9	5002889	5002969	LINE	L1_Mus1	L1	chr9L1_Mus15002843	NonProperStrand	1	1	-inf
chr12	105867132	105867152	LINE	Lx5	L1	chr12Lx5105865170	ProperStrand	1	chr9	123462082	123462123	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr9	123462033	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr10	80609702	80609792	protein_coding	Zbtb7a	intron	ENSMUSG00000035011	ProperStrand	2	2	-inf
chr11	6528086	6528164	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr2	168011157	168011174	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	1	-8.9707
chr2	172825339	172825357	SINE	B3	B2	chr2B3172825204	ProperStrand	3	chr1	167340306	167340406	protein_coding	Dcaf6	intron	ENSMUSG00000026571	ProperStrand	9	1	-17.1740
chr7	101069131	101069211	LINE	L1_Mus3	L1	chr7L1_Mus3101069036	ProperStrand	1	chr7	101068911	101069001	LINE	Lx2	L1	chr7Lx2101067937	NonProperStrand	1	1	-inf
chr12	87437703	87437818	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr5	114852005	114852031	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-3.1531
chr8	22217647	22217737	LTR	BGLII	ERVK	chr8BGLII22217356	ProperStrand	1	chr8	22217245	22217325	LTR	RMER3D-int	ERVK	chr8RMER3D-int22216434	ProperStrand	1	1	-inf
chr1	58504956	58504974	protein_coding	Nif3l1	intron	ENSMUSG00000026036	ProperStrand	1	chr2	32963367	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-inf
chr17	54347694	54347784	LINE	L1_Mus2	L1	chr17L1_Mus254346803	NonProperStrand	1	chrX	134758748	134758828	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	14	1	-inf
chr12	73087996	73088015	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	6	chr19	8888597	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-8.2509
chr14	75972539	75972586	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr5	110692047	110692147	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	1	-10.8412
chr17	39846602	39846656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr14	75074888	75074907	protein_coding	Htr2a	intron	ENSMUSG00000034997	ProperStrand	4	1	-5.2608
chr3	11516433	11516513	LTR	MTEa	MaLR	chr3MTEa11516373	ProperStrand	1	chr3	11516797	11516887	LTR	RMER2	ERV1	chr3RMER211516641	ProperStrand	1	1	-inf
chr1	48435998	48436088	LINE	L1M2	L1	chr1L1M248435977	ProperStrand	1	chr1	48435788	48435868	LINE	L1_Mur3	L1	chr1L1_Mur348435771	ProperStrand	1	1	-inf
chr3	123507958	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr17	24719675	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	3	-3.5252
chr5	146261267	146261316	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-8.0994
chr19	8888594	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	chr19	8252252	8252286	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	1	-6.1993
chr5	110692047	110692157	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	chr13	44869596	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-6.1768
chr1	192745613	192745686	LINE	Lx5	L1	chr1Lx5192745136	NonProperStrand	1	chr11	6390514	6390604	antisense	Gm11973	.	ENSMUSG00000086839	ProperStrand	1	1	-inf
chr4	21577758	21577777	LINE	L1Md_T	L1	chr4L1Md_T21577444	ProperStrand	1	chr2	130276251	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-inf
chr11	6619844	6619889	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	chr2	90395146	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-4.8387
chrX	162790362	162790379	protein_coding	Gpm6b	intron	ENSMUSG00000031342	ProperStrand	3	chr13	44869606	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-8.8788
chr2	47390644	47390724	LINE	L1Md_F2	L1	chr2L1Md_F247390449	NonProperStrand	1	chr2	47390922	47391012	LINE	Lx5	L1	chr2Lx547390863	ProperStrand	1	1	-inf
chr14	5071192	5071282	protein_coding	Gm3298	intron	ENSMUSG00000079383	ProperStrand	1	chr14	4018868	4018948	protein_coding	Gm2916	intron	ENSMUSG00000079397	ProperStrand	1	1	-inf
chr3	100153968	100154048	LINE	L1MA4	L1	chr3L1MA4100153932	NonProperStrand	1	chr3	100153839	100153929	SINE	B3A	B2	chr3B3A100153794	NonProperStrand	1	1	-inf
chr11	59486898	59486938	protein_coding	Mprip	intron	ENSMUSG00000005417	NonProperStrand	5	chr1	136365160	136365186	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	10	1	-15.7399
chr3	46308755	46308845	LTR	MT2A	ERVL	chr3MT2A46308741	NonProperStrand	1	chr7	47186421	47186501	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	2	1	-inf
chr17	39846656	39846745	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr14	63421104	63421122	lincRNA	4931440J10Rik	intron	ENSMUSG00000085212	NonProperStrand	2	1	-7.0123
chr17	39847160	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	16102580	16102716	protein_coding	Rdh10	intron	ENSMUSG00000025921	NonProperStrand	1	1	-inf
chr3	75621451	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	4	chr16	96403371	96403388	protein_coding-noncoding	Lca5l	utr3	ENSMUSG00000045275	NonProperStrand	2	1	-19.9239
chr10	107484646	107484663	LINE	L1MA4	L1	chr10L1MA4107484557	NonProperStrand	1	chr17	39847471	39847528	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr18	57546601	57546691	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	8	chr12	67667956	67668036	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-12.3771
chr4	53860699	53860724	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	5	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.9532
chr9	123461984	123462010	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr15	83154508	83154555	protein_coding	Arfgap3	intron	ENSMUSG00000054277	ProperStrand	3	1	-7.1766
chr8	3803254	3803344	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	chr16	18951028	18951046	protein_coding	Hira	intron	ENSMUSG00000022702	NonProperStrand	2	1	-15.9877
chrX	74344550	74344568	LINE	L1Md_F2	L1	chrXL1Md_F274343867	ProperStrand	4	chr14	118978688	118978704	protein_coding	Abcc4	intron	ENSMUSG00000032849	NonProperStrand	5	1	-17.7431
chr10	80638205	80638262	SINE	ID_B1	B4	chr10ID_B180638127	NonProperStrand	1	chr16	91036675	91037322	protein_coding	Gcfc1	intron	ENSMUSG00000022974	ProperStrand	1	1	-inf
chrX	7867559	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	16	chr4	132309940	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-5.0278
chr17	39847504	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr14	32191926	32192024	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	3	-4.1761
chr10	91118342	91118517	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr4	132352442	132352857	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	4	-16.0718
chr2	53417500	53417590	LINE	L1Md_A	L1	chr2L1Md_A53414748	NonProperStrand	1	chr2	53419734	53419814	LTR	MTC-int	MaLR	chr2MTC-int53419463	NonProperStrand	1	1	-inf
chr5	122851730	122851810	protein_coding-noncoding	Arpc3	utr5	ENSMUSG00000029465	NonProperStrand	1	chr5	122851603	122851693	protein_coding	Arpc3	intron	ENSMUSG00000029465	NonProperStrand	1	1	-inf
chr8	121898017	121898058	LTR	MuRRS4-int	ERV1	chr8MuRRS4-int121897445	NonProperStrand	2	chr8	121906866	121906965	SINE	B1_Mur4	Alu	chr8B1_Mur4121906860	NonProperStrand	2	2	-inf
chr17	70963743	70963851	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr17	24719675	24719724	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-5.6582
chr10	103763917	103763997	LTR	ORR1D1	MaLR	chr10ORR1D1103763814	NonProperStrand	1	chr3	36092408	36092498	protein_coding	Qrfpr	intron	ENSMUSG00000058400	NonProperStrand	1	1	-inf
chr17	39846767	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	32608999	32613220	protein_coding	Tfrc	intron	ENSMUSG00000022797	ProperStrand	1	1	-inf
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	15	1	-4.3969
chr9	21731857	21732389	protein_coding	Ccdc159	intron	ENSMUSG00000006241	ProperStrand	2	chr9	21731756	21731836	protein_coding	Tmem205	utr5	ENSMUSG00000040883	NonProperStrand	1	1	-inf
chr14	75972536	75972620	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr4	132310031	132310059	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-5.2943
chr4	132310239	132310305	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr11	117077242	117077322	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-4.3173
chr17	39846599	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	82829936	82829952	protein_coding	Phip	intron	ENSMUSG00000032253	ProperStrand	4	1	-5.2608
chr3	93441026	93441116	LTR	RLTR14-int	ERV1	chr3RLTR14-int93440988	ProperStrand	1	chr3	93441326	93441406	SINE	B2_Mm1t	B2	chr3B2_Mm1t93441249	ProperStrand	1	1	-inf
chr2	106325672	106325762	lincRNA	Gm14015	intron	ENSMUSG00000087226	ProperStrand	3	chr2	132197995	132198075	protein_coding	Prokr2	utr3	ENSMUSG00000050558	NonProperStrand	2	1	-20.7434
chr5	110234431	110234531	LTR	LTRIS2	ERV1	chr5LTRIS2110234292	NonProperStrand	1	chr9	15315291	15315323	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr16	35981617	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr18	35557037	35557101	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-3.7586
chr6	133930952	133931032	LINE	Lx9	L1	chr6Lx9133930926	ProperStrand	1	chr6	133930702	133930792	LTR	ORR1B1	MaLR	chr6ORR1B1133930572	NonProperStrand	1	1	-inf
chr17	39848008	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	6468524	6468579	protein_coding	Nrxn2	intron	ENSMUSG00000033768	ProperStrand	6	1	-3.8783
chr12	50676610	50676690	LINE	Lx	L1	chr12Lx50676584	ProperStrand	1	chr12	50676386	50676476	LTR	MTC-int	MaLR	chr12MTC-int50676252	NonProperStrand	1	1	-inf
chr9	123461876	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr19	24869402	24869424	protein_coding	Pgm5	intron	ENSMUSG00000041731	NonProperStrand	3	1	-7.1766
chr2	144266061	144266092	SINE	B1_Mur1	Alu	chr2B1_Mur1144266055	NonProperStrand	2	chr2	5304252	5304270	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-9.4768
chr1	48450003	48450083	LTR	RLTR20B3	ERVK	chr1RLTR20B348449955	ProperStrand	1	chr1	48450313	48450403	LTR	RLTR20B3	ERVK	chr1RLTR20B348450236	ProperStrand	1	1	-inf
chr11	62604554	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	5	chr9	123461967	123462005	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-5.9940
chr11	55482709	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr5	146261020	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	2	-3.5532
chr17	39848709	39848799	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr4	72123671	72123751	LINE	L1_Mur3	L1	chr4L1_Mur372121770	ProperStrand	1	1	-inf
chr4	132309360	132310064	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr17	24720814	24720907	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	7	-5.6959
chr16	8488871	8488931	protein_coding-noncoding	Mettl22	utr5	ENSMUSG00000039345	NonProperStrand	2	chr7	29737313	29737398	protein_coding	Actn4	intron	ENSMUSG00000054808	NonProperStrand	1	1	-inf
chr11	116050611	116050691	protein_coding-noncoding	Acox1	utr3	ENSMUSG00000020777	NonProperStrand	1	chr11	116050790	116050880	protein_coding	Acox1	exon	ENSMUSG00000020777	NonProperStrand	1	1	-inf
chr7	97580191	97580281	SINE	B1_Mus1	Alu	chr7B1_Mus197580138	NonProperStrand	1	chr7	97580315	97580395	SINE	B1_Mus1	Alu	chr7B1_Mus197580337	NonProperStrand	1	1	-inf
chr13	95330644	95330715	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr4	132309940	132310041	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	2	-3.0508
chr14	74116838	74116928	LINE	L1Md_F3	L1	chr14L1Md_F374116546	ProperStrand	1	chr14	74117098	74117178	LINE	L1Md_T	L1	chr14L1Md_T74117010	NonProperStrand	1	1	-inf
chr11	69667870	69667949	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr6	115808033	115808114	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	2	-4.6879
chr16	47469221	47469301	LINE	Lx9	L1	chr16Lx947468932	ProperStrand	1	chr16	45752677	45752767	protein_coding	Phldb2	intron	ENSMUSG00000033149	NonProperStrand	3	1	-inf
chr12	102876976	102877056	LINE	L1Md_F2	L1	chr12L1Md_F2102875652	NonProperStrand	1	chr17	39847778	39847868	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr6	147021383	147021400	SINE	PB1D7	Alu	chr6PB1D7147021347	NonProperStrand	2	chr4	132309950	132310050	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-9.7441
chr11	6528086	6528163	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr14	122279612	122279637	protein_coding	Ubac2	intron	ENSMUSG00000041765	NonProperStrand	3	1	-12.0535
chr11	49623596	49623686	protein_coding	Gfpt2	intron	ENSMUSG00000020363	ProperStrand	1	chr11	48701113	48701193	protein_coding	Gm5431	utr3	ENSMUSG00000058163	NonProperStrand	1	1	-inf
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr4	97642573	97642591	protein_coding	Nfia	intron	ENSMUSG00000028565	ProperStrand	6	1	-10.9408
chr13	23555476	23555494	protein_coding	Btn1a1	intron	ENSMUSG00000000706	NonProperStrand	2	chr2	130276288	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-11.4177
chr6	52045822	52045912	DNA	Arthur1	Tip100	chr6Arthur152045757	ProperStrand	1	chr6	52045049	52045129	SINE	B1_Mur2	Alu	chr6B1_Mur252045066	ProperStrand	1	1	-inf
chr17	39848477	39848585	LINE	L1Md_T	L1	chr17L1Md_T39848464	NonProperStrand	29	chr17	39846225	39846991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	2	-11.3277
chr11	109012011	109012040	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr11	116674636	116674669	protein_coding	Mxra7	intron	ENSMUSG00000020814	NonProperStrand	3	1	-11.8956
chr7	135132608	135132688	SINE	B3A	B2	chr7B3A135132588	ProperStrand	1	chr7	134922155	134922245	protein_coding	Setd1a	intron	ENSMUSG00000042308	ProperStrand	1	1	-inf
chr12	65660475	65660555	LTR	RMER12	ERVK	chr12RMER1265660466	ProperStrand	1	chr12	65660342	65660432	LTR	RMER15	ERVL	chr12RMER1565660302	NonProperStrand	1	1	-inf
chr17	24719729	24719774	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr4	56897624	56897743	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-5.7567
chr17	39846955	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	84677013	84677040	LTR	IAPEY_LTR	ERVK	chr8IAPEY_LTR84676831	ProperStrand	1	1	-inf
chr3	144720111	144720128	LINE	L1Md_T	L1	chr3L1Md_T144718500	NonProperStrand	1	chr19	57034107	57034150	protein_coding	Afap1l2	intron	ENSMUSG00000025083	ProperStrand	4	1	-inf
chr2	5379317	5379340	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	1	-3.1774
chr11	59076322	59076338	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	7	chr16	23110839	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.6666
chr18	10052131	10052156	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr11	69667884	69669735	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	2	-6.7338
chr17	39845813	39845913	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chrX	157088561	157088581	protein_coding	Ppef1	intron	ENSMUSG00000062168	ProperStrand	1	1	-inf
chr1	151351061	151351077	LINE	L1_Mus4	L1	chr1L1_Mus4151350567	ProperStrand	1	chr17	39847107	39847197	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	1	-inf
chr10	105238419	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	chr9	15313801	15315279	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	3	-10.1027
chr4	39131165	39131255	LINE	Lx9	L1	chr4Lx939130994	ProperStrand	1	chr4	39131449	39131529	LINE	Lx9	L1	chr4Lx939131294	NonProperStrand	1	1	-inf
chr8	28682020	28682110	LINE	L1_Mus2	L1	chr8L1_Mus228681920	ProperStrand	1	chr8	28681673	28681753	LTR	RMER6C	ERVK	chr8RMER6C28681427	ProperStrand	1	1	-inf
chr5	121205007	121205115	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr9	15313801	15315266	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	5	-5.6270
chr11	69667931	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr16	19883804	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	2	-4.3731
chr5	114851994	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	1	-5.3474
chr1	36517120	36517200	LTR	MLT1A	MaLR	chr1MLT1A36517096	NonProperStrand	1	chr1	36517541	36517631	LTR	MTC	MaLR	chr1MTC36517521	NonProperStrand	1	1	-inf
chr6	4541465	4541484	SINE	B3A	B2	chr6B3A4541380	ProperStrand	1	chr16	23110380	23110450	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr12	36645897	36645977	LINE	Lx6	L1	chr12Lx636645871	NonProperStrand	1	chr12	36645788	36645878	LTR	RLTR14	ERV1	chr12RLTR1436645600	NonProperStrand	1	1	-inf
chr10	17124521	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr7	109520134	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-5.9010
chr1	90114965	90115055	processed_transcript	Gm20528	.	ENSMUSG00000092220	ProperStrand	2	chr1	90115137	90115217	protein_coding	Ugt1a6b	utr3	ENSMUSG00000090145	NonProperStrand	1	1	-inf
chr5	129877099	129877179	LTR	RMER13A	ERVK	chr5RMER13A129876537	NonProperStrand	6	chr5	129877252	129877343	LTR	RMER21B	ERV1	chr5RMER21B129877228	ProperStrand	6	6	-inf
chr17	39842998	39843038	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39842842	NonProperStrand	11	chr2	5379283	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-5.5219
chr8	13416896	13416915	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	11	chr16	23110837	23110865	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.7386
chr11	109012016	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr5	132231866	132231882	protein_coding	Auts2	intron	ENSMUSG00000029673	NonProperStrand	9	1	-9.4166
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr1	20562461	20562477	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	7	1	-12.0013
chr7	90206170	90206250	DNA	MER58C	MER1_type	chr7MER58C90206169	NonProperStrand	1	chr7	90206306	90206396	SINE	RSINE1	B4	chr7RSINE190206295	ProperStrand	2	1	-inf
chr10	91118345	91118380	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr9	110281290	110281318	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-7.3683
chr17	39847212	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	3	-9.2221
chr9	71403287	71403367	protein_coding-noncoding	Myzap	utr3	ENSMUSG00000041361	NonProperStrand	1	chr9	71403681	71403771	protein_coding	Gcom1	intron	ENSMUSG00000092137	NonProperStrand	1	1	-inf
chr17	83916491	83916581	DNA	URR1A	MER1_type	chr17URR1A83916477	NonProperStrand	1	chr17	83916270	83916350	LTR	ORR1A2	MaLR	chr17ORR1A283916119	ProperStrand	1	1	-inf
chr2	44861527	44861607	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	5	chr18	61493596	61493686	protein_coding	Ppargc1b	intron	ENSMUSG00000033871	NonProperStrand	5	1	-17.2429
chr9	110025744	110025824	SINE	B2_Mm2	B2	chr9B2_Mm2110025674	NonProperStrand	3	chr9	110025564	110025655	SINE	RSINE1	B4	chr9RSINE1110025568	NonProperStrand	3	3	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	chr15	86194838	86194872	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-11.3378
chr9	123462058	123462076	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr11	101024266	101024361	protein_coding	Plekhh3	exon	ENSMUSG00000035172	NonProperStrand	1	1	-inf
chr13	51648198	51648293	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-4.8289
chr11	6619844	6619889	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	chr5	107905202	107905260	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-8.3380
chr17	39846472	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	9833545	9833561	protein_coding	Pag1	utr5	ENSMUSG00000027508	NonProperStrand	1	1	-inf
chr5	144979196	144979286	protein_coding-noncoding	Tecpr1	utr3	ENSMUSG00000066621	NonProperStrand	2	chr5	144979077	144979157	protein_coding	Tecpr1	intron	ENSMUSG00000066621	NonProperStrand	1	1	-inf
chr9	120130421	120130452	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr3	8544931	8544949	protein_coding	Stmn2	intron	ENSMUSG00000027500	ProperStrand	3	1	-11.2767
chr2	90395147	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr10	39959641	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	1	-4.3969
chr9	118674952	118674984	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	7	chr5	136520658	136520748	protein_coding	Upk3b	utr3	ENSMUSG00000042985	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr9	64295937	64296014	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	10	1	-6.2246
chr13	92961776	92961856	LTR	ORR1C1	MaLR	chr13ORR1C192961754	ProperStrand	1	chr13	92961902	92961992	Simple_repeat	(TC)n	Simple_repeat	chr13(TC)n92961927	ProperStrand	1	1	-inf
chr14	76560572	76560662	LINE	Lx8	L1	chr14Lx876560546	ProperStrand	1	chr14	76560721	76560801	SINE	B1_Mus1	Alu	chr14B1_Mus176560653	NonProperStrand	1	1	-inf
chr7	109520119	109520183	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr14	75074888	75074907	protein_coding	Htr2a	intron	ENSMUSG00000034997	ProperStrand	4	1	-8.9823
chr1	63179007	63179071	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	chr2	32963297	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	2	-9.4009
chr17	39846750	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	91596104	91596178	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	11	2	-5.5940
chr8	22180366	22180446	LINE	Lx	L1	chr8Lx22180042	ProperStrand	1	chr8	22217801	22217891	pseudogene	Defa-ps3	.	ENSMUSG00000087663	NonProperStrand	1	1	-inf
chr16	32099303	32099393	protein_coding-noncoding	Pigx	utr3	ENSMUSG00000023791	ProperStrand	2	chr16	32099407	32099487	protein_coding	Pigx	intron	ENSMUSG00000023791	ProperStrand	2	2	-inf
chr16	23110402	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr1	20562461	20562477	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	7	1	-5.9793
chr17	39847684	39847767	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr4	132309941	132309992	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	ProperStrand	2	2	-inf
chr4	132352955	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr10	105238291	105238519	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-5.4327
chr16	23110761	23110802	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr4	123291353	123291415	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-5.1031
chr18	10052132	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr5	114852002	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	2	-6.6846
chr6	91291975	91292065	LTR	MT2_Mm	ERVL	chr6MT2_Mm91291955	ProperStrand	1	chr6	91291275	91291355	LTR	MTE-int	MaLR	chr6MTE-int91290665	NonProperStrand	1	1	-inf
chr17	39847066	39847417	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr9	123461797	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	27	-5.1421
chr6	26130432	26130522	LINE	Lx	L1	chr6Lx26130156	NonProperStrand	1	chr6	26130705	26130785	LINE	Lx9	L1	chr6Lx926130573	ProperStrand	1	1	-inf
chr17	4082219	4082299	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	21	chr1	192471919	192472009	LINE	L1Md_F2	L1	chr1L1Md_F2192470562	ProperStrand	1	1	-inf
chrX	4899374	4899403	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-4.5559
chr7	69833639	69833729	LINE	L1Md_T	L1	chr7L1Md_T69831187	ProperStrand	1	chr14	33967738	33967818	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	1	-inf
chr4	132309940	132310050	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr11	64882897	64882917	protein_coding	Arhgap44	intron	ENSMUSG00000033389	ProperStrand	1	1	-inf
chr4	133419949	133419982	protein_coding	Rps6ka1	exon	ENSMUSG00000003644	NonProperStrand	2	chr19	8888614	8888673	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr14	47310935	47310998	SINE	B4A	B4	chr14B4A47310888	ProperStrand	1	chr9	123462005	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr17	39846750	39846779	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chrX	132221085	132221107	protein_coding	1700008I05Rik	intron	ENSMUSG00000058252	NonProperStrand	1	1	-inf
chr10	84526882	84526898	LTR	RLTR25B	ERVK	chr10RLTR25B84526706	NonProperStrand	1	chr9	58594684	58594702	SINE	ID_B1	B4	chr9ID_B158594665	ProperStrand	1	1	-inf
chr16	11144083	11144173	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chr14	52081865	52081882	protein_coding	Gm7247	intron	ENSMUSG00000068399	ProperStrand	2	1	-14.9073
chr13	50891266	50891346	LINE	L1M2	L1	chr13L1M250891141	ProperStrand	1	chr13	50891669	50891759	LINE	L1_Mur2	L1	chr13L1_Mur250891328	ProperStrand	1	1	-inf
chr13	112578213	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr17	12922871	12922904	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	1	-3.1863
chr13	100744311	100744329	protein_coding	Mccc2	intron	ENSMUSG00000021646	ProperStrand	2	chr9	123462108	123462134	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr5	85939307	85939326	LINE	L1Md_F	L1	chr5L1Md_F85936677	NonProperStrand	6	chr2	59876762	59876778	lincRNA	Gm13572	exon	ENSMUSG00000085975	ProperStrand	1	1	-inf
chr1	34629022	34629112	LTR	RLTR11B	ERVK	chr1RLTR11B34628781	NonProperStrand	1	chr1	34629262	34629342	SINE	B1_Mur4	Alu	chr1B1_Mur434629194	NonProperStrand	1	1	-inf
chr3	110622018	110622035	LINE	L1Md_F2	L1	chr3L1Md_F2110621395	NonProperStrand	1	chr15	34440790	34440914	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-inf
chr3	100961881	100961971	LINE	Lx8	L1	chr3Lx8100961810	ProperStrand	1	chr3	100962504	100962584	LINE	Lx8	L1	chr3Lx8100962167	ProperStrand	1	1	-inf
chr7	81725846	81725862	LINE	Lx3_Mus	L1	chr7Lx3_Mus81725444	NonProperStrand	1	chr11	6337587	6337692	protein_coding	H2afv	intron	ENSMUSG00000041126	ProperStrand	1	1	-inf
chr5	109801209	109801288	LINE	Lx2B	L1	chr5Lx2B109800393	NonProperStrand	1	chr5	109801471	109801561	LINE	Lx2B	L1	chr5Lx2B109801462	ProperStrand	1	1	-inf
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr12	73087993	73088010	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	6	1	-13.5222
chr1	26486294	26486384	LINE	L1Md_A	L1	chr1L1Md_A26485270	ProperStrand	1	chr12	67667926	67668006	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr4	131399742	131399822	protein_coding-noncoding	Mecr	utr5	ENSMUSG00000028910	ProperStrand	1	chr4	131399873	131399963	protein_coding	Mecr	intron	ENSMUSG00000028910	ProperStrand	1	1	-inf
chr11	55482733	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	ProperStrand	1	chr11	109011802	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	1	-inf
chr19	21781327	21781407	LINE	L1Md_F2	L1	chr19L1Md_F221781169	NonProperStrand	1	chr19	21781754	21781844	LINE	L1VL4	L1	chr19L1VL421781544	ProperStrand	1	1	-inf
chr1	133444132	133444212	LTR	MLT1B	MaLR	chr1MLT1B133443950	ProperStrand	1	chr6	146720505	146720595	protein_coding	Stk38l	intron	ENSMUSG00000001630	NonProperStrand	2	1	-inf
chr14	121578306	121578396	protein_coding	Farp1	intron	ENSMUSG00000025555	ProperStrand	3	chr14	120435476	120435556	protein_coding	Oxgr1	intron	ENSMUSG00000044819	NonProperStrand	1	1	-inf
chr11	69669703	69669749	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	1	-5.0650
chr5	146692247	146692337	LINE	Lx5	L1	chr5Lx5146692238	ProperStrand	1	chr5	146692036	146692116	LINE	Lx8	L1	chr5Lx8146691917	ProperStrand	1	1	-inf
chr4	107087126	107087143	protein_coding	Tmem48	utr3	ENSMUSG00000028614	NonProperStrand	3	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-16.5606
chr17	26786343	26786361	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	12	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-6.0939
chr13	12337140	12337220	protein_coding	Mtr	intron	ENSMUSG00000021311	ProperStrand	4	chr13	12411460	12411550	protein_coding	Actn2	intron	ENSMUSG00000052374	ProperStrand	3	1	-18.9508
chr3	35497509	35497526	LINE	L1_Mus3	L1	chr3L1_Mus335496862	NonProperStrand	2	chr16	11144061	11144174	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-14.9074
chr14	49306257	49306273	LINE	L1_Mus1	L1	chr14L1_Mus149306036	ProperStrand	1	chr17	24720818	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-inf
chr15	86330530	86330610	LINE	L1M3	L1	chr15L1M386330159	ProperStrand	5	chr15	86330642	86330732	SINE	B1_Mur4	Alu	chr15B1_Mur486330604	ProperStrand	5	5	-inf
chr14	111507685	111507775	LINE	L1Md_T	L1	chr14L1Md_T111506969	ProperStrand	1	chr14	111507993	111508073	LINE	L1Md_T	L1	chr14L1Md_T111507975	NonProperStrand	1	1	-inf
chr9	4870507	4870587	LINE	L1_Mur1	L1	chr9L1_Mur14869190	NonProperStrand	1	chr9	4870706	4870796	LINE	L1_Mur1	L1	chr9L1_Mur14870694	NonProperStrand	1	1	-inf
chr11	3522928	3524676	LINE	L1ME4a	L1	chr11L1ME4a3524508	NonProperStrand	1	chr16	23110846	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr14	37954093	37954173	LTR	RMER17C-int	ERVK	chr14RMER17C-int37953626	NonProperStrand	1	chr14	37954289	37954379	LTR	RMER17C-int	ERVK	chr14RMER17C-int37954244	NonProperStrand	1	1	-inf
chr4	65124523	65124539	protein_coding	Astn2	intron	ENSMUSG00000028373	NonProperStrand	9	chr9	118900613	118900629	protein_coding	Ctdspl	intron	ENSMUSG00000047409	ProperStrand	8	1	-14.9344
chr1	131573996	131574027	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	chr9	15315201	15315267	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-3.3664
chr15	61987551	61987570	lincRNA	Pvt1	intron	ENSMUSG00000072566	NonProperStrand	8	chr2	158356480	158356561	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-9.4443
chr17	39847026	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	130873928	130873948	LTR	RLTR22_Mur	ERVK	chr2RLTR22_Mur130873882	NonProperStrand	1	1	-inf
chrX	87238369	87238403	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr13	95330639	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	1	-4.9626
chr8	89824977	89824999	LTR	LTR16A	ERVL	chr8LTR16A89824828	ProperStrand	1	chr1	89119848	89119953	protein_coding	Eif4e2	intron	ENSMUSG00000026254	NonProperStrand	1	1	-inf
chr17	39847277	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr7	38240964	38240980	protein_coding	Zfp536	intron	ENSMUSG00000043456	ProperStrand	5	1	-11.9399
chr7	109520134	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr4	133705561	133705577	protein_coding	Gm17345	intron	ENSMUSG00000090954	ProperStrand	2	1	-10.7680
chr5	109751499	109751579	LINE	Lx3C	L1	chr5Lx3C109750243	ProperStrand	1	chr5	109774073	109774163	protein_coding	Vmn2r16	intron	ENSMUSG00000092080	NonProperStrand	1	1	-inf
chr17	34950952	34950980	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr3	83766575	83766592	protein_coding	D930015E06Rik	intron	ENSMUSG00000033767	ProperStrand	7	1	-11.6175
chr3	67651736	67651816	LINE	Lx6	L1	chr3Lx667650262	ProperStrand	1	chr3	67652465	67652555	LINE	Lx6	L1	chr3Lx667651990	ProperStrand	1	1	-inf
chr11	109011790	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	167065312	167065334	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	6	1	-4.7173
chr15	45051736	45051826	LINE	L1_Mur3	L1	chr15L1_Mur345051762	ProperStrand	1	chr15	45051545	45051625	LINE	Lx7	L1	chr15Lx745051555	NonProperStrand	1	1	-inf
chr11	97781644	97781734	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr6	77245108	77245125	protein_coding	Ctnna2	intron	ENSMUSG00000063063	NonProperStrand	2	1	-12.5553
chr17	39848162	39848255	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	chr4	8855200	8855217	LTR	MLT1B	MaLR	chr4MLT1B8855156	NonProperStrand	1	1	-inf
chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	114913644	114913660	pseudogene	Gm12834	.	ENSMUSG00000081138	ProperStrand	1	1	-inf
chr5	146261239	146261282	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr2	158359849	158359931	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-6.1038
chr4	150336658	150336681	LTR	RMER19B	ERVK	chr4RMER19B150336420	ProperStrand	1	chr9	123462125	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr1	122357188	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr4	117645224	117645315	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	6	1	-10.1430
chr17	39848053	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	7295416	7295434	LTR	RMER13B	ERVK	chr19RMER13B7295407	ProperStrand	1	1	-inf
chr10	40258553	40258633	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	23	chr17	39845839	39845929	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	1	-6.8208
chr6	3201509	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr4	43492785	43492889	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	3	-15.4014
chr2	126761296	126761314	LINE	L1M5	L1	chr2L1M5126761120	NonProperStrand	1	mmu-miR-6240	2	20	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-inf
chr11	55482712	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chrX	87238361	87238389	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	1	-5.1766
chr3	33135023	33135103	LTR	MLT1A1	MaLR	chr3MLT1A133134989	ProperStrand	1	chr3	33134858	33134948	LTR	MTE2b	MaLR	chr3MTE2b33134568	ProperStrand	1	1	-inf
chr18	70584216	70584235	LINE	L1Md_T	L1	chr18L1Md_T70583725	ProperStrand	1	chr11	61312399	61312524	LTR	ORR1A4	MaLR	chr11ORR1A461312319	NonProperStrand	1	1	-inf
chr12	69976059	69976075	LTR	MamGypLTR1b	Gypsy	chr12MamGypLTR1b69975944	NonProperStrand	1	mmu-miR-6240	4	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-inf
chr17	39846417	39847150	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	132309465	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	25	-3.1430
chr3	31458682	31458699	LINE	L1Md_F2	L1	chr3L1Md_F231458416	NonProperStrand	4	chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-7.2097
chr11	6528083	6528168	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr17	39847476	39848036	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	8	-3.5413
chr8	67310621	67310701	protein_coding	Klhl2	intron	ENSMUSG00000031605	NonProperStrand	2	chr8	67281229	67281319	protein_coding	Klhl2	intron	ENSMUSG00000031605	ProperStrand	4	1	-19.9190
chr2	5379284	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chrX	103821772	103821788	protein_coding	Gm5127	intron	ENSMUSG00000073010	NonProperStrand	1	1	-inf
chr12	78350926	78351004	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr2	90395146	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-3.4218
chr15	4778128	4778208	SINE	B3A	B2	chr15B3A4778043	ProperStrand	1	chr15	4778538	4778628	Simple_repeat	(TCTA)n	Simple_repeat	chr15(TCTA)n4778552	ProperStrand	1	1	-inf
chr3	57928393	57928483	LINE	L1M5	L1	chr3L1M557928352	NonProperStrand	1	chr9	121687522	121687602	protein_coding	Kbtbd5	exon	ENSMUSG00000074001	NonProperStrand	1	1	-inf
chr8	5181531	5181611	LINE	L1_Mus1	L1	chr8L1_Mus15181156	NonProperStrand	1	chr8	5181723	5181815	Simple_repeat	(TTTG)n	Simple_repeat	chr8(TTTG)n5181746	ProperStrand	1	1	-inf
chr5	129070867	129070947	LINE	L1MB7	L1	chr5L1MB7129070887	NonProperStrand	1	chr5	129070508	129070598	LTR	ORR1A2	MaLR	chr5ORR1A2129070459	NonProperStrand	1	1	-inf
chr17	55719232	55719322	LINE	L1Md_T	L1	chr17L1Md_T55714441	NonProperStrand	1	chr17	35927707	35927787	LTR	MER21B	ERV1	chr17MER21B35927677	ProperStrand	1	1	-inf
chr6	3201498	3201557	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr16	23110837	23110934	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	3	-3.1134
chr5	146261267	146261317	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-4.9892
chr17	39847060	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	140231715	140231733	SINE	B1_Mur2	Alu	chr4B1_Mur2140231711	ProperStrand	1	1	-inf
chr4	28041973	28041992	LTR	MTB	MaLR	chr4MTB28041682	ProperStrand	1	chr4	151683832	151683913	protein_coding	Rnf207	intron	ENSMUSG00000058498	NonProperStrand	2	1	-inf
chr2	5379252	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	NonProperStrand	10	chr4	131925640	131925656	protein_coding	Phactr4	intron	ENSMUSG00000066043	ProperStrand	1	1	-inf
chr17	39846726	39846816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr15	81729439	81729457	protein_coding	Aco2	intron	ENSMUSG00000022477	ProperStrand	2	1	-7.0123
chr16	23110771	23111719	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr5	121205020	121205138	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	3	-5.7085
chr8	61763217	61763236	LINE	Lx8	L1	chr8Lx861762759	ProperStrand	3	chr17	39847025	39847127	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-5.9338
chr16	35981606	35981641	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr2	32963383	32963414	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-2.9961
chr7	29446480	29446532	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr4	132310239	132310322	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-4.4032
chr13	23436347	23436415	processed_transcript	4930586N03Rik	.	ENSMUSG00000087097	ProperStrand	3	chr12	105031202	105031222	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-13.4121
chr16	23111677	23111701	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	109318087	109318103	pseudogene	Gm13925	.	ENSMUSG00000081746	ProperStrand	3	1	-7.8954
chrX	74272499	74272565	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr16	11143905	11143995	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	3	1	-13.4854
chr10	105373255	105373345	Low_complexity	GA-rich	Low_complexity	chr10GA-rich105373205	NonProperStrand	1	chr10	104631732	104631812	protein_coding	Tmtc2	intron	ENSMUSG00000036019	ProperStrand	5	1	-inf
chr17	39846139	39846175	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chr6	125177450	125177517	protein_coding	Tapbpl	intron	ENSMUSG00000038213	ProperStrand	1	1	-inf
chr8	123241521	123241611	misc_RNA	7SK	.	ENSMUSG00000088416	ProperStrand	1	chr8	123241780	123241860	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	48	1	-inf
chr16	23111647	23111716	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	149	chr10	13090862	13090878	protein_coding	Phactr2	intron	ENSMUSG00000062866	NonProperStrand	4	1	-10.7525
chr19	8724386	8724466	SINE	B1_Mus2	Alu	chr19B1_Mus28724406	ProperStrand	2	chr19	8724781	8724871	SINE	B3A	B2	chr19B3A8724791	NonProperStrand	1	1	-inf
chr10	23785345	23785404	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr3	104652818	104652857	protein_coding	Capza1	intron	ENSMUSG00000070372	NonProperStrand	2	1	-10.3808
chr4	16974193	16974273	LINE	L4	RTE	chr4L416973993	ProperStrand	2	chr4	16974666	16974756	LTR	RLTR18	ERVK	chr4RLTR1816974680	NonProperStrand	2	2	-inf
chr9	118674952	118675013	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	7	chr13	23698384	23698445	protein_coding	Hist1h2be	intron	ENSMUSG00000047246	NonProperStrand	1	1	-inf
chrX	94353844	94353924	LINE	L1Md_F	L1	chrXL1Md_F94353719	ProperStrand	1	chrX	94354268	94354358	LINE	Lx2B	L1	chrXLx2B94354229	ProperStrand	1	1	-inf
mmu-miR-3963	3	19	miRNA	mmu-miR-3963	.	mmu-miR-3963	ProperStrand	5	chr9	123461931	123462035	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-5.9940
chr17	39847678	39847698	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr15	99603005	99603021	antisense	Gm17058	.	ENSMUSG00000090406	NonProperStrand	3	1	-5.4090
chr11	55482776	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr2	22744848	22744880	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	1	-6.1004
chr17	39847330	39847843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	19883802	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	8	-3.5927
chr16	92456796	92456872	protein_coding	Rcan1	intron	ENSMUSG00000022951	ProperStrand	6	chr13	97190562	97190604	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-7.2176
chr5	146261266	146261325	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr9	123461821	123462152	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	8	-9.3570
chr16	23110390	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr4	148453094	148453110	protein_coding	Pex14	intron	ENSMUSG00000028975	NonProperStrand	3	1	-7.8954
chr4	120892185	120892204	SINE	ID_B1	B4	chr4ID_B1120892175	ProperStrand	2	chr5	121205006	121205040	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-11.0157
chr19	24294861	24294951	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	4	chr19	32230567	32230647	protein_coding	Sgms1	intron	ENSMUSG00000040451	NonProperStrand	8	1	-16.7243
chr17	39847767	39847865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	25250784	25250802	protein_coding	Plaur	intron	ENSMUSG00000046223	ProperStrand	1	1	-inf
chr1	136105624	136105641	protein_coding	Adora1	intron	ENSMUSG00000042429	NonProperStrand	1	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-inf
chr17	39847404	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	115807974	115808115	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	9	-5.3506
chr11	96081048	96081068	LTR	RMER19C	ERVK	chr11RMER19C96080444	ProperStrand	1	chr9	123461968	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	1	-9.7150
chr18	60629824	60629916	LTR	MERVK26-int	ERVK	chr18MERVK26-int60624423	ProperStrand	1	chr4	132309984	132310064	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr18	32382405	32382485	protein_coding	Map3k2	intron	ENSMUSG00000024383	NonProperStrand	1	chr18	32366166	32366256	protein_coding	Map3k2	intron	ENSMUSG00000024383	ProperStrand	1	1	-inf
chr17	39848099	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr4	147932776	147936655	protein_coding	Exosc10	intron	ENSMUSG00000017264	NonProperStrand	1	1	-inf
chrX	4899369	4899402	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr12	105031131	105031214	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-8.9865
chr9	102462871	102462951	LINE	L1M5	L1	chr9L1M5102462766	ProperStrand	1	chr9	102462559	102462649	Simple_repeat	(GTTTG)n	Simple_repeat	chr9(GTTTG)n102462548	NonProperStrand	1	1	-inf
chr17	39848099	39848143	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr5	135217499	135217535	protein_coding	Eln	intron	ENSMUSG00000029675	NonProperStrand	1	1	-inf
chr14	112054392	112054482	LINE	Lx7	L1	chr14Lx7112053984	NonProperStrand	1	chr14	112054664	112054744	LTR	RMER19C	ERVK	chr14RMER19C112054667	ProperStrand	1	1	-inf
chr10	126979560	126979578	protein_coding-noncoding	Lrp1	utr3	ENSMUSG00000040249	NonProperStrand	1	chr8	126944902	126944950	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-inf
chr11	17221298	17221340	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	7	chr4	132309952	132310064	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-6.7251
chr10	23785365	23785410	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr9	120130133	120130186	LTR	MTD	MaLR	chr9MTD120129944	NonProperStrand	1	1	-inf
chr16	37777304	37777321	protein_coding-noncoding	Fstl1	utr5	ENSMUSG00000022816	ProperStrand	1	chr2	32963312	32963363	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-inf
chr15	34440790	34440880	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr10	108363693	108363773	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	1	-7.0054
chr11	60039833	60039916	SINE	PB1D9	Alu	chr11PB1D960039804	NonProperStrand	1	chr17	48394274	48394319	protein_coding	Trem3	intron	ENSMUSG00000041754	NonProperStrand	1	1	-inf
chr15	5264855	5264935	SINE	MIR	MIR	chr15MIR5264838	NonProperStrand	1	chr15	5265104	5265194	SINE	RSINE1	B4	chr15RSINE15265112	ProperStrand	1	1	-inf
chr11	69669634	69669689	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr1	71637375	71638509	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	17	1	-5.9841
chr17	39843690	39843909	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	ProperStrand	12	chr17	39843503	39843695	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	65	4	-23.1836
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr18	35557193	35557227	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-3.9834
chr17	39843382	39843472	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	65	chr2	58281693	58281711	protein_coding	Acvr1	intron	ENSMUSG00000026836	NonProperStrand	2	1	-14.2093
chr8	45155774	45155792	SINE	B1_Mur2	Alu	chr8B1_Mur245155708	NonProperStrand	1	chr5	107905176	107905277	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-inf
chr2	5379283	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr16	23111696	23111753	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	2	-6.5044
chr2	24920844	24920924	LTR	ORR1B1-int	MaLR	chr2ORR1B1-int24920370	NonProperStrand	1	chr2	24921022	24921112	LTR	ORR1B1	MaLR	chr2ORR1B124921023	ProperStrand	1	1	-inf
chr14	25344498	25344588	LTR	RMER4B	ERVK	chr14RMER4B25344284	ProperStrand	1	chr12	67667754	67667834	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr8	96036037	96036127	LINE	L1M4	L1	chr8L1M496036042	ProperStrand	1	chr8	96036349	96036429	LINE	L1M4	L1	chr8L1M496036371	ProperStrand	1	1	-inf
chr8	62877550	62877630	LINE	L1Md_T	L1	chr8L1Md_T62876745	ProperStrand	1	chr8	62877883	62877973	LINE	L1Md_T	L1	chr8L1Md_T62877860	ProperStrand	1	1	-inf
chr7	117937752	117937842	protein_coding-noncoding	Ampd3	utr3	ENSMUSG00000005686	ProperStrand	1	chr7	117937293	117937373	protein_coding	Ampd3	exon	ENSMUSG00000005686	ProperStrand	2	1	-inf
chr2	102829374	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	15	chr9	123462015	123462125	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	2	-6.4219
chr10	91118350	91118381	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr17	24720805	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-4.6731
chr1	178628275	178628292	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n178628257	NonProperStrand	1	chr9	123461847	123461873	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr11	106501242	106501324	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr9	123461876	123462170	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	7	-4.2082
chr15	34440894	34440918	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr1	131573997	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-4.3900
chr10	23785349	23785398	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr6	4962001	4962019	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	NonProperStrand	5	1	-8.0893
chr4	70283686	70283766	LTR	MTA_Mm	MaLR	chr4MTA_Mm70283624	ProperStrand	1	chr4	70283514	70283604	LTR	ORR1B1	MaLR	chr4ORR1B170283302	NonProperStrand	1	1	-inf
chr15	77651165	77651255	protein_coding	Myh9	intron	ENSMUSG00000022443	ProperStrand	2	chr11	67536525	67536605	protein_coding	Glp2r	intron	ENSMUSG00000049928	NonProperStrand	2	2	-inf
chr14	54469397	54469414	LINE	L1ME2	L1	chr14L1ME254469365	ProperStrand	2	chr16	23110757	23110817	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-8.9865
chr2	5379278	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr16	19883803	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	3	-4.1504
chr11	109011794	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	85446280	85446302	protein_coding	Fbxo41	intron	ENSMUSG00000047013	ProperStrand	2	1	-7.3577
chr18	61555717	61555733	protein_coding	Ppargc1b	intron	ENSMUSG00000033871	ProperStrand	3	chr5	124760109	124760125	protein_coding	Mphosph9	intron	ENSMUSG00000038126	ProperStrand	1	1	-inf
chr16	23110766	23110800	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr12	73087993	73088010	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	6	1	-9.8388
chr1	119335902	119335982	LTR	RMER3D-int	ERVK	chr1RMER3D-int119335794	NonProperStrand	1	chr1	119336134	119336224	LTR	RMER3D-int	ERVK	chr1RMER3D-int119336008	NonProperStrand	1	1	-inf
chr17	39847444	39847515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	33857138	33857217	LTR	MT2_Mm	ERVL	chr18MT2_Mm33857071	ProperStrand	1	1	-inf
chr1	122357172	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr2	77931513	77931529	lincRNA	4930440I19Rik	intron	ENSMUSG00000085431	ProperStrand	1	1	-inf
chr1	161036066	161036100	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	8	chr5	146261175	146261194	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-6.6207
chr17	39847878	39847911	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr14	47550526	47550616	protein_coding	Samd4	intron	ENSMUSG00000021838	ProperStrand	4	1	-11.6346
chr17	39848099	39848145	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr11	68067867	68067885	protein_coding	Ntn1	intron	ENSMUSG00000020902	NonProperStrand	6	1	-8.0611
chr11	6620374	6620393	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr17	52285491	52285508	SINE	B1_Mus2	Alu	chr17B1_Mus252285365	ProperStrand	1	1	-inf
chr14	75847999	75848035	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr11	106501253	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-3.3630
chr6	93815824	93912897	protein_coding	Magi1	intron	ENSMUSG00000045095	NonProperStrand	11	chr16	23110832	23110865	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.7386
chr17	39847929	39847952	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	62819558	62819613	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	3	1	-5.4090
chr11	62420881	62420961	antisense	4930443B20Rik	.	ENSMUSG00000085762	ProperStrand	1	chr11	62421188	62421278	protein_coding	BC046404	intron	ENSMUSG00000046417	NonProperStrand	1	1	-inf
chr8	95746063	95746099	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	chr2	158356447	158356555	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-5.4555
chr2	20935104	20935194	Simple_repeat	(TTTC)n	Simple_repeat	chr2(TTTC)n20935108	ProperStrand	1	chr2	26921228	26921308	protein_coding	Tmem8c	intron	ENSMUSG00000009214	ProperStrand	1	1	-inf
chr10	60302432	60302498	SINE	B3	B2	chr10B360302400	ProperStrand	1	chr11	69669691	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-inf
chr15	23454706	23454725	LINE	L1_Rod	L1	chr15L1_Rod23454645	ProperStrand	6	chr16	35981599	35981646	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	2	-17.1291
chr11	109011745	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	81445037	81445056	LINE	L1_Mm	L1	chr4L1_Mm81444938	NonProperStrand	11	1	-3.5018
chr2	102829380	102829439	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	15	chr15	100528529	100528545	antisense	1810009N23Rik	.	ENSMUSG00000090062	ProperStrand	2	1	-17.1916
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	4740128	4740151	protein_coding	2210411K11Rik	intron	ENSMUSG00000030431	ProperStrand	6	1	-4.7173
chr15	80082861	80082920	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	56	chr8	70895758	70895817	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-3.9854
chr12	87437681	87437705	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr8	70895844	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-3.4920
chr14	32752047	32752127	LTR	BGLII_B	ERVK	chr14BGLII_B32751733	ProperStrand	1	chr14	32752169	32752259	LTR	ORR1C1	MaLR	chr14ORR1C132752148	NonProperStrand	1	1	-inf
chr11	69669704	69669728	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr11	93968356	93968372	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	2	1	-10.8530
chr5	135325769	135325849	LTR	MER21B	ERV1	chr5MER21B135325655	ProperStrand	1	chr5	135325382	135325472	SINE	B1F	Alu	chr5B1F135325364	NonProperStrand	1	1	-inf
chr11	109011791	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	152837182	152837198	protein_coding	Hmcn1	intron	ENSMUSG00000066842	NonProperStrand	6	1	-4.7173
chr18	33795191	33795291	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr2	158356423	158356471	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-7.0916
chr17	39846486	39846512	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	88057122	88057728	protein_coding	Rhbg	intron	ENSMUSG00000001417	ProperStrand	3	1	-5.9338
chr17	26786344	26786362	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	12	chr9	15313839	15313878	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-6.6308
chr18	87765572	87765652	LINE	Lx4B	L1	chr18Lx4B87765485	NonProperStrand	1	chr18	87765302	87765392	LTR	RMER19C	ERVK	chr18RMER19C87764972	NonProperStrand	1	1	-inf
chr8	48710609	48710699	LTR	RMER5	ERV1	chr8RMER548710471	ProperStrand	1	chr8	48710775	48710855	SINE	B2_Mm2	B2	chr8B2_Mm248710712	ProperStrand	1	1	-inf
chr7	126588152	126588270	protein_coding	Gp2	intron	ENSMUSG00000030954	NonProperStrand	1	chr17	24720770	24720810	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-inf
chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	chr13	44869592	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-4.3731
chrX	103672688	103672720	protein_coding	Fndc3c1	intron	ENSMUSG00000033737	NonProperStrand	5	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-13.0754
chr7	109520134	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr5	107905190	107907471	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	3	-5.2257
chr11	109011745	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	23110382	23111702	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	56	-21.8877
chr15	80078527	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr16	43575530	43575551	protein_coding	Zbtb20	intron	ENSMUSG00000022708	NonProperStrand	7	1	-11.4681
chr6	81994325	81994415	protein_coding-noncoding	Fam176a	utr5	ENSMUSG00000035104	NonProperStrand	1	chr6	81994711	81994791	protein_coding	Fam176a	intron	ENSMUSG00000035104	NonProperStrand	2	1	-inf
chr4	33502542	33502559	protein_coding	Rngtt	intron	ENSMUSG00000028274	ProperStrand	4	chr8	126944927	126944952	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-10.7126
chr11	106501253	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr12	54696839	54696909	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	14	1	-7.4906
chr1	155343242	155343332	LTR	RLTR9A	ERVK	chr1RLTR9A155343024	NonProperStrand	1	chr1	155342896	155342976	SINE	B1_Mm	Alu	chr1B1_Mm155342857	ProperStrand	1	1	-inf
chr1	61227274	61227364	LTR	ORR1D1	MaLR	chr1ORR1D161227214	ProperStrand	1	chr1	61227624	61227704	Low_complexity	AT_rich	Low_complexity	chr1AT_rich61227639	NonProperStrand	1	1	-inf
chrX	50766984	50767064	LINE	Lx9	L1	chrXLx950766882	NonProperStrand	1	chr10	122565884	122565974	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	1	-inf
chr5	146261022	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	107796522	107796538	protein_coding	Plekhb1	intron	ENSMUSG00000030701	NonProperStrand	1	1	-inf
chr3	136443676	136443766	protein_coding	Ppp3ca	intron	ENSMUSG00000028161	ProperStrand	3	chr9	121696455	121696535	protein_coding	Hhatl	intron	ENSMUSG00000032523	ProperStrand	1	1	-inf
chr17	39847858	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	54829783	54829801	LTR	IAPEz-int	ERVK	chr7IAPEz-int54825810	NonProperStrand	1	1	-inf
chr10	23785415	23785453	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-3.9089
chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	chr12	105032252	105032268	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-3.1160
chr15	77789934	77789959	protein_coding	Eif3d	intron	ENSMUSG00000016554	ProperStrand	2	chr1	34850291	34850315	protein_coding	Arhgef4	intron	ENSMUSG00000037509	NonProperStrand	6	1	-19.1217
chr4	132309476	132309566	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr4	56897631	56897746	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	2	-5.7035
chr9	19657545	19657781	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	chr14	33967484	33967809	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	4	-inf
chrX	94189822	94189850	LINE	L1VL2	L1	chrXL1VL294189392	NonProperStrand	10	chr17	39847030	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-3.3657
chr7	141448876	141448903	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chrX	74272497	74272568	SINE	B3	B2	chrXB374272477	ProperStrand	54	1	-7.2680
chr11	55482707	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr5	114851974	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	2	-4.7269
chr9	123462153	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr9	21237734	21237750	protein_coding	Dnm2	intron	ENSMUSG00000033335	NonProperStrand	6	1	-5.5993
chr11	50199831	50199848	protein_coding	Hnrnph1	utr3	ENSMUSG00000007850	ProperStrand	1	chr4	131884913	131885003	protein_coding	Trnau1ap	intron	ENSMUSG00000028898	ProperStrand	1	1	-inf
chr15	64334903	64334922	LINE	Lx6	L1	chr15Lx664334905	ProperStrand	3	chr6	93815824	93912897	protein_coding	Magi1	intron	ENSMUSG00000045095	NonProperStrand	11	1	-16.7429
chr1	161037387	161037405	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	4	chr17	24720867	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-9.2419
chr15	85177764	85177786	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	chr5	115560901	115561001	protein_coding	Acads	exon	ENSMUSG00000029545	NonProperStrand	6	1	-13.4387
chr17	39846353	39846996	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	121205006	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	20	-7.1963
chr2	168601393	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr4	132309581	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-4.5885
chr2	90395137	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr18	10151036	10151141	snRNA	ENSMUSG00000065941_U1	.	ENSMUSG00000065941	ProperStrand	1	1	-inf
chr2	166490543	166490633	protein_coding	Prex1	intron	ENSMUSG00000039621	NonProperStrand	2	chr2	166490731	166490811	protein_coding	Prex1	intron	ENSMUSG00000039621	ProperStrand	4	1	-19.9190
chr12	119832509	119832599	LINE	L1MA4	L1	chr12L1MA4119832374	NonProperStrand	1	chr12	67667925	67668005	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr7	16875460	16875478	SINE	B2_Mm2	B2	chr7B2_Mm216875425	NonProperStrand	1	chr17	84699682	84699700	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	7	1	-inf
chr17	39847163	39847223	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr6	3201509	3201550	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	20	1	-3.5714
chr11	106501242	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr2	130276251	130276351	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	2	-3.5609
chr2	168601393	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-5.0681
chr19	59436030	59436120	LTR	MTD	MaLR	chr19MTD59435975	NonProperStrand	2	chr19	59435855	59435935	LTR	MTE2b	MaLR	chr19MTE2b59435769	ProperStrand	2	2	-inf
chr17	39847991	39848021	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	57391124	57391612	protein_coding	2610528E23Rik	intron	ENSMUSG00000022748	ProperStrand	9	1	-3.0808
chr13	44869601	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr2	91596159	91596176	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	11	1	-6.0064
chr11	97781675	97781747	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr11	99017076	99017098	LTR	RLTR25B	ERVK	chr11RLTR25B99017055	ProperStrand	18	1	-7.5447
chr17	39847552	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	149650064	149650080	LTR	MTE2b	MaLR	chr4MTE2b149650049	NonProperStrand	1	1	-inf
chrX	55386330	55386410	LINE	Lx7	L1	chrXLx755385482	NonProperStrand	1	chrX	55386573	55386663	SINE	B3	B2	chrXB355386471	ProperStrand	1	1	-inf
chr17	22624567	22624647	LTR	IAPLTR1a_Mm	ERVK	chr17IAPLTR1a_Mm22624482	NonProperStrand	1	chr17	22624408	22624498	LTR	RLTR13C1	ERVK	chr17RLTR13C122623720	NonProperStrand	1	1	-inf
chr10	53105803	53105893	LTR	MTE2b	MaLR	chr10MTE2b53105540	NonProperStrand	1	chr10	53105957	53106037	SINE	B1_Mm	Alu	chr10B1_Mm53105930	NonProperStrand	1	1	-inf
chr17	39846463	39846487	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	115123815	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	2	1	-7.0123
chr15	43154006	43154096	LINE	L1Md_F2	L1	chr15L1Md_F243153817	NonProperStrand	1	chr15	44141961	44142041	LTR	RMER13B	ERVK	chr15RMER13B44141947	ProperStrand	1	1	-inf
chr11	109011647	109011702	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	108927146	108930127	protein_coding	Clpb	intron	ENSMUSG00000001829	NonProperStrand	2	1	-7.3577
chr17	23743554	23743572	protein_coding	Zscan10	intron	ENSMUSG00000023902	ProperStrand	1	chr7	109520119	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-inf
chr17	39847222	39847353	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	172341265	172341283	protein_coding	Nos1ap	intron	ENSMUSG00000038473	ProperStrand	4	1	-6.8874
chr5	24380955	24380973	protein_coding-noncoding	Prkag2	utr3	ENSMUSG00000028944	ProperStrand	1	chr4	99904794	99904811	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	16	1	-inf
chr8	47696132	47696212	protein_coding-noncoding	Ccdc111	utr3	ENSMUSG00000038225	ProperStrand	1	chr8	47695965	47696055	protein_coding	Ccdc111	utr5	ENSMUSG00000038225	ProperStrand	1	1	-inf
chr17	39847440	39847711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	116843218	116843236	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	3	-4.6311
chr11	109011795	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	98929623	98929713	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	6	1	-4.7173
chr15	86194877	86194919	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	chr16	23110835	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.0230
chr3	88544144	88544234	SINE	B2_Mm2	B2	chr3B2_Mm288544163	ProperStrand	1	chr3	88544041	88544121	SINE	B3	B2	chr3B388543970	NonProperStrand	1	1	-inf
chr7	93995284	93995302	LINE	L1Md_T	L1	chr7L1Md_T93994338	ProperStrand	5	chr16	31676814	31676908	protein_coding	Dlg1	intron	ENSMUSG00000022770	ProperStrand	3	1	-18.4526
chr10	88459685	88459702	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	11	chr4	56897724	56897757	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-11.2373
chr8	70895757	70895776	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr8	95746062	95746162	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-3.9521
chr9	120130474	120130504	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr12	78350926	78351054	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	1	-6.7014
chr13	90873821	90873911	LTR	MTC-int	MaLR	chr13MTC-int90873658	ProperStrand	1	chr13	90873488	90873568	LTR	ORR1D1	MaLR	chr13ORR1D190873376	ProperStrand	1	1	-inf
chr11	43429946	43430036	LINE	L2a	L2	chr11L2a43429935	ProperStrand	1	chr11	43430200	43430280	LTR	RMER17B	ERVK	chr11RMER17B43430207	ProperStrand	1	1	-inf
chr19	58244398	58244478	LINE	L1MA10	L1	chr19L1MA1058244350	NonProperStrand	1	chr19	58244171	58244261	LINE	L1MB3	L1	chr19L1MB358244176	NonProperStrand	1	1	-inf
chr17	12992128	12992148	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	6	chr5	114852012	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-8.1224
chr15	34440835	34440859	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr10	76721515	76721855	protein_coding	Gm10941	utr5	ENSMUSG00000078444	ProperStrand	1	1	-inf
chr5	17776753	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	chr16	23110837	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.4066
chr7	26535080	26535096	protein_coding	Hnrnpul1	intron	ENSMUSG00000040725	NonProperStrand	1	chr2	158356447	158356548	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-inf
chr6	17054390	17054480	antisense	Gm4876	.	ENSMUSG00000054556	ProperStrand	3	chr14	33968108	33968188	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	2	-inf
chr7	110046454	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	1	-9.5990
chr5	143154844	143154867	Simple_repeat	(TG)n	Simple_repeat	chr5(TG)n143154647	NonProperStrand	1	chr13	112578208	112578308	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-inf
chr10	23785341	23785431	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr6	85866320	85866337	protein_coding	Tprkb	intron	ENSMUSG00000054226	NonProperStrand	1	1	-inf
chr11	109011828	109011857	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	105605252	105605269	LINE	L1Md_T	L1	chr8L1Md_T105603228	ProperStrand	1	1	-inf
chr13	32670598	32670618	LINE	L1_Mus1	L1	chr13L1_Mus132665466	NonProperStrand	1	chr17	39847800	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr19	8724034	8724062	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr13	102732949	102732966	LTR	IAPEz-int	ERVK	chr13IAPEz-int102731412	ProperStrand	1	1	-inf
chr18	89452039	89452129	LINE	L1_Mus2	L1	chr18L1_Mus289451903	NonProperStrand	1	chr18	89452201	89452281	LINE	Lx8	L1	chr18Lx889452169	ProperStrand	1	1	-inf
chr10	23785398	23785428	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr2	25938374	25938471	protein_coding	Nacc2	intron	ENSMUSG00000026932	ProperStrand	4	1	-8.5965
chr13	96170506	96170586	LTR	RLTR45-int	ERVK	chr13RLTR45-int96170500	ProperStrand	1	chr13	96170196	96170286	LTR	RMER16-int	ERVK	chr13RMER16-int96170173	ProperStrand	1	1	-inf
chr17	39846033	39846093	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chr17	39843514	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	1	-4.0299
chr8	119905988	119906004	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	13	chr13	97190548	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.6017
chrX	70123075	70123092	LTR	IAPEz-int	ERVK	chrXIAPEz-int70120991	ProperStrand	1	chr5	63049923	63049941	protein_coding	Arap2	intron	ENSMUSG00000037999	NonProperStrand	5	1	-inf
chr17	39847953	39848043	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr9	66776396	66776413	SINE	B4A	B4	chr9B4A66776177	NonProperStrand	1	1	-inf
chr1	89140161	89140241	SINE	B2_Mm2	B2	chr1B2_Mm289140183	ProperStrand	1	chr1	89140467	89140557	SINE	RSINE1	B4	chr1RSINE189140422	ProperStrand	1	1	-inf
chr7	137917237	137917317	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	25	chr7	137917635	137917725	protein_coding	Btbd16	utr5	ENSMUSG00000040298	ProperStrand	1	1	-inf
chr7	109520119	109520147	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-4.2721
chr6	38872281	38872361	protein_coding	Tbxas1	intron	ENSMUSG00000029925	NonProperStrand	4	chr6	37238741	37238831	protein_coding	Dgki	intron	ENSMUSG00000038665	ProperStrand	3	1	-18.9508
chr17	39846606	39846695	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr14	30524632	30524649	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	10	1	-9.1944
chr12	29081643	29081661	LTR	MTC	MaLR	chr12MTC29081563	NonProperStrand	1	chr13	97190570	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr16	23110396	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr7	28174639	28174795	protein_coding	Spnb4	intron	ENSMUSG00000011751	NonProperStrand	4	1	-7.2097
chr16	23110396	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr1	106724365	106724381	protein_coding	Cdh20	intron	ENSMUSG00000050840	NonProperStrand	5	1	-6.7063
chr17	39846807	39846874	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	122747087	122747104	LTR	MT2A	ERVL	chr2MT2A122747003	ProperStrand	1	1	-inf
chr10	52927110	52927200	LTR	RLTR44E	ERVK	chr10RLTR44E52926901	ProperStrand	1	chr10	52927506	52927586	LTR	RNERVK23-int	ERVK	chr10RNERVK23-int52927355	ProperStrand	1	1	-inf
chr17	39846779	39846804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	163779870	163779886	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	9	1	-3.5690
chr9	72925872	72925888	protein_coding	Rab27a	intron	ENSMUSG00000032202	NonProperStrand	3	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-12.0718
chr14	84273006	84273086	LTR	IAPEz-int	ERVK	chr14IAPEz-int84271111	ProperStrand	1	chr18	37527935	37528025	LTR	IAPEz-int	ERVK	chr18IAPEz-int37524098	ProperStrand	1	1	-inf
chr6	115807974	115808117	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr16	23110835	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	5	-6.3148
chr11	12031363	12031382	LINE	L1Md_T	L1	chr11L1Md_T12029196	ProperStrand	1	chr9	110281320	110281346	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-inf
chr10	21141855	21141872	Simple_repeat	(TG)n	Simple_repeat	chr10(TG)n21141746	NonProperStrand	1	chr18	78074480	78074499	protein_coding	Pstpip2	intron	ENSMUSG00000025429	ProperStrand	1	1	-inf
chr2	90395135	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	130172936	130172974	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	13	1	-4.6792
chr5	53253561	53253651	protein_coding-noncoding	Anapc4	utr5	ENSMUSG00000029176	NonProperStrand	1	chr5	53253778	53253858	protein_coding	Anapc4	intron	ENSMUSG00000029176	NonProperStrand	1	1	-inf
chr1	79607158	79607238	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	4	chrX	48755593	48755684	protein_coding	Hs6st2	intron	ENSMUSG00000062184	ProperStrand	2	1	-19.9239
chr17	39847160	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr12	112916432	112916678	protein_coding	Trmt61a	utr5	ENSMUSG00000060950	NonProperStrand	1	1	-inf
chr6	37821080	37821170	protein_coding	Trim24	utr5	ENSMUSG00000029833	ProperStrand	1	chr17	45018585	45018665	protein_coding	Supt3h	intron	ENSMUSG00000038954	NonProperStrand	5	1	-inf
chr10	104403939	104404019	LINE	L1Md_F2	L1	chr10L1Md_F2104403716	NonProperStrand	1	chr10	105030663	105030753	SINE	B4A	B4	chr10B4A105030612	ProperStrand	1	1	-inf
chr19	39564275	39564355	LINE	L1_Mus4	L1	chr19L1_Mus439564178	NonProperStrand	1	chr11	65503311	65503401	protein_coding	Map2k4	utr3	ENSMUSG00000033352	ProperStrand	4	1	-inf
chr11	109011791	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	16	2	-4.9557
chr17	24720796	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr2	32963318	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	4	-5.0142
chr18	10052133	10052154	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr1	131355795	131355827	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	21	1	-9.5243
chr1	179481892	179481972	SINE	B3	B2	chr1B3179481901	NonProperStrand	1	chr1	179481742	179481832	SINE	RSINE1	B4	chr1RSINE1179481662	ProperStrand	1	1	-inf
chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-5.3906
chr5	32737640	32737730	SINE	RSINE1	B4	chr5RSINE132737645	ProperStrand	1	chr11	3130797	3130877	protein_coding	Drg1	intron	ENSMUSG00000020457	ProperStrand	11	1	-inf
chr3	88514816	88514896	protein_coding	2810403A07Rik	utr3	ENSMUSG00000028060	NonProperStrand	6	chr3	88516296	88516386	protein_coding	2810403A07Rik	utr3	ENSMUSG00000028060	ProperStrand	2	1	-19.1249
chr3	123507994	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr6	46996884	46996903	protein_coding	Cntnap2	intron	ENSMUSG00000039419	ProperStrand	26	1	-4.2730
chr17	39847213	39847265	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	116300473	116300540	protein_coding	Nasp	utr5	ENSMUSG00000028693	NonProperStrand	1	1	-inf
chr11	109011748	109011768	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr14	50466120	50466138	LINE	L1Md_F2	L1	chr14L1Md_F250464365	NonProperStrand	5	1	-5.1059
chr10	61940955	61941041	protein_coding	Vps26a	intron	ENSMUSG00000020078	ProperStrand	1	chr13	104024617	104024633	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	8	1	-inf
chr11	94943805	94944611	LTR	ORR1E	MaLR	chr11ORR1E94944268	ProperStrand	5	chr17	39848144	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-8.4635
chr1	71246418	71246498	LINE	Lx	L1	chr1Lx71246315	ProperStrand	1	chr1	71246529	71246619	LTR	MTB_Mm	MaLR	chr1MTB_Mm71246482	NonProperStrand	1	1	-inf
chr11	97781693	97781742	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr17	35162562	35162621	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	1	-4.2264
chr2	90395139	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	45336298	45336316	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	5	1	-6.6729
chr19	28839250	28839330	DNA	MER45B	Tip100	chr19MER45B28839222	ProperStrand	1	chr19	28839526	28839616	LTR	RLTRETN_Mm	ERVK	chr19RLTRETN_Mm28839546	ProperStrand	1	1	-inf
chr2	177903367	177903457	protein_coding	Phactr3	intron	ENSMUSG00000027525	NonProperStrand	5	chr1	140972505	140972585	protein_coding	Dennd1b	intron	ENSMUSG00000056268	NonProperStrand	1	1	-inf
chr14	75972538	75972607	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr17	39847473	39847550	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	2	-4.1492
chr11	69667869	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr9	123461825	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	11	-4.5134
chr5	129464079	129464169	SINE	B2_Mm2	B2	chr5B2_Mm2129464044	NonProperStrand	1	chr5	129292540	129292620	protein_coding	Rimbp2	exon	ENSMUSG00000029420	NonProperStrand	3	1	-inf
chrX	62762226	62762306	LTR	IAPEz-int	ERVK	chrXIAPEz-int62761468	NonProperStrand	2	chrX	95845023	95845113	protein_coding	Ophn1	intron	ENSMUSG00000031214	ProperStrand	4	2	-inf
chr10	23785349	23785398	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr10	9852070	9852088	LTR	MTD	MaLR	chr10MTD9852057	ProperStrand	4	1	-8.5965
chr17	39846770	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	89968683	89968700	protein_coding	Ugt1a10	intron	ENSMUSG00000090165	ProperStrand	1	1	-inf
chr17	39847862	39847888	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chrX	131106120	131106137	protein_coding	Btk	intron	ENSMUSG00000031264	ProperStrand	3	1	-5.4090
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	89475694	89475722	LINE	Lx2	L1	chr15Lx289475356	ProperStrand	2	1	-7.3577
chr19	43733731	43733811	SINE	PB1D10	Alu	chr19PB1D1043733730	NonProperStrand	1	chr19	43767511	43767601	protein_coding	Entpd7	intron	ENSMUSG00000025192	ProperStrand	2	1	-inf
chr4	65124525	65124541	protein_coding	Astn2	intron	ENSMUSG00000028373	NonProperStrand	9	chr2	65764441	65764466	protein_coding	Csrnp3	intron	ENSMUSG00000044647	ProperStrand	2	1	-18.2634
chr5	31374754	31374844	protein_coding-noncoding	Cad	utr5	ENSMUSG00000013629	ProperStrand	1	chr5	31374609	31374689	protein_coding	Cad	intron	ENSMUSG00000013629	ProperStrand	1	1	-inf
chr9	120130486	120130503	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr13	49684297	49684375	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-5.6238
chr11	117783002	117783082	LTR	RMER13B	ERVK	chr11RMER13B117782455	ProperStrand	1	chr11	117783216	117783306	pseudogene	Gm11726	.	ENSMUSG00000082562	ProperStrand	1	1	-inf
chr11	109011800	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	106461163	106461182	SINE	B1_Mus1	Alu	chr5B1_Mus1106461126	NonProperStrand	1	1	-inf
chr14	18388290	18388370	DNA	MER5A1	MER1_type	chr14MER5A118388258	NonProperStrand	1	chr14	18676436	18676526	protein_coding	Thrb	intron	ENSMUSG00000021779	NonProperStrand	5	1	-inf
chr8	94503932	94504022	LTR	ORR1E	MaLR	chr8ORR1E94503955	NonProperStrand	1	chr8	94503720	94503800	SINE	B1F	Alu	chr8B1F94503717	NonProperStrand	1	1	-inf
chr18	80415521	80415611	protein_coding-noncoding	Txnl4a	utr5	ENSMUSG00000057130	NonProperStrand	1	chr18	80415700	80415780	protein_coding	Txnl4a	intron	ENSMUSG00000057130	NonProperStrand	3	1	-inf
chr6	127964209	127964298	protein_coding	Tspan9	intron	ENSMUSG00000030352	ProperStrand	3	chr16	24984417	24984433	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	1	-14.9679
chr16	35981617	35981637	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr1	92950549	92950565	protein_coding	Lrrfip1	intron	ENSMUSG00000026305	ProperStrand	3	1	-12.3061
chr11	6528139	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr3	96176387	96176435	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	1	-7.3133
chr13	97190551	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr16	23111378	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	3	-7.6551
chr16	20326970	20327060	LINE	L1_Mur3	L1	chr16L1_Mur320326063	ProperStrand	1	chr14	73096046	73096126	protein_coding	Fndc3a	intron	ENSMUSG00000033487	ProperStrand	2	1	-inf
chr16	12540712	12540802	LINE	L1Md_F	L1	chr16L1Md_F12540560	ProperStrand	1	chr12	67663021	67663101	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr17	71273610	71273643	lincRNA	Gm16627	intron	ENSMUSG00000085299	ProperStrand	1	chr9	123461948	123462008	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr10	24600280	24600304	protein_coding	Med23	intron	ENSMUSG00000019984	ProperStrand	1	chr19	8888597	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-inf
chr17	69380711	69380801	LINE	L1Md_F3	L1	chr17L1Md_F369380707	NonProperStrand	1	chr17	69380594	69380674	LTR	MTB	MaLR	chr17MTB69380499	ProperStrand	1	1	-inf
chr17	39848134	39848165	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr4	48610425	48610528	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	7	1	-7.7277
chr15	102233653	102233743	LINE	L1Md_F3	L1	chr15L1Md_F3102233655	NonProperStrand	1	chr15	102233354	102233434	SINE	RSINE1	B4	chr15RSINE1102233336	NonProperStrand	1	1	-inf
chr10	65972962	65973052	SINE	B1_Mus1	Alu	chr10B1_Mus165972936	NonProperStrand	1	chr10	65973073	65973153	Simple_repeat	(GGGGA)n	Simple_repeat	chr10(GGGGA)n65973085	NonProperStrand	1	1	-inf
chr17	39847475	39847544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	120242452	120242487	protein_coding	Nploc4	utr3	ENSMUSG00000039703	NonProperStrand	6	1	-3.8783
chr13	54190151	54190181	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	chr17	24720805	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-3.9002
chr17	27701913	27701993	protein_coding	AI413582	intron	ENSMUSG00000062753	NonProperStrand	1	chr17	27702085	27702175	protein_coding	C130040N14Rik	utr5	ENSMUSG00000073429	ProperStrand	1	1	-inf
chr10	8331894	8331984	SINE	B3A	B2	chr10B3A8331827	ProperStrand	2	chr10	8332057	8332137	SINE	MIR	MIR	chr10MIR8332029	NonProperStrand	2	2	-inf
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	106864546	106864580	protein_coding	Dock3	intron	ENSMUSG00000039716	NonProperStrand	3	1	-7.8617
chr9	40803630	40803669	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	23	chr5	121205007	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-5.5387
chrX	133687228	133687302	LINE	L1_Mus2	L1	chrXL1_Mus2133687048	ProperStrand	1	chr10	52145772	52145788	protein_coding	Nus1	intron	ENSMUSG00000023068	ProperStrand	1	1	-inf
chr17	39847059	39847355	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr16	23110825	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	20	-3.3589
chr6	124649384	124649464	protein_coding-noncoding	Lpcat3	utr5	ENSMUSG00000004270	NonProperStrand	1	chr6	124649130	124649220	protein_coding	Lpcat3	intron	ENSMUSG00000004270	NonProperStrand	1	1	-inf
chr19	8723994	8724033	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr9	123462082	123462146	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-3.0341
chr14	75847933	75848034	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr5	146261248	146261288	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	1	-6.3728
chrX	87238359	87238409	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr18	74778410	74778426	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	13	1	-9.1404
chr8	112221522	112221612	SINE	B2_Mm2	B2	chr8B2_Mm2112221473	NonProperStrand	1	chr8	112221149	112221229	SINE	B3	B2	chr8B3112221145	ProperStrand	1	1	-inf
chr10	23785349	23785413	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr2	22744854	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	1	-3.1754
chr2	130276315	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	chr4	56897631	56897731	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-4.8908
chr11	84044327	84044407	protein_coding	Acaca	intron	ENSMUSG00000020532	NonProperStrand	5	chr11	83808191	83808281	protein_coding	Synrg	intron	ENSMUSG00000034940	NonProperStrand	1	1	-inf
chr17	39847880	39847953	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	57022815	57022866	protein_coding	1700061G19Rik	exon	ENSMUSG00000024209	NonProperStrand	3	1	-5.4090
chr6	32695858	32695938	LINE	L1Md_A	L1	chr6L1Md_A32690569	ProperStrand	1	chr6	32696103	32696193	LINE	L1Md_A	L1	chr6L1Md_A32695879	ProperStrand	1	1	-inf
chr15	98950885	98950965	LTR	RMER17D2	ERVK	chr15RMER17D298950684	ProperStrand	1	chr15	99034532	99037059	protein_coding	Spats2	intron	ENSMUSG00000051934	NonProperStrand	3	1	-inf
chr11	106836625	106836705	SINE	B1F1	Alu	chr11B1F1106836636	ProperStrand	1	chr11	106836400	106836490	SINE	B3	B2	chr11B3106836293	ProperStrand	1	1	-inf
chr11	72917752	72917768	protein_coding	Itgae	intron	ENSMUSG00000005947	NonProperStrand	4	chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.1761
chr2	64887469	64887549	SINE	B1_Mus1	Alu	chr2B1_Mus164887485	ProperStrand	1	chr2	122279593	122279683	protein_coding	Slc28a2	intron	ENSMUSG00000027219	ProperStrand	2	1	-inf
chr9	43208183	43208273	Other	RMER1A	Other	chr9RMER1A43207984	NonProperStrand	1	chr9	43207874	43207953	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n43207888	ProperStrand	1	1	-inf
chr6	52310761	52310779	LINE	L1_Mus4	L1	chr6L1_Mus452308427	NonProperStrand	1	chr16	23110865	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr9	20911437	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	11	chr7	109520210	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-6.7881
chr7	135723983	135724063	LTR	MLT1B	MaLR	chr7MLT1B135723890	NonProperStrand	1	chr7	135723697	135723787	LTR	MTEa	MaLR	chr7MTEa135723400	ProperStrand	1	1	-inf
chrX	37082909	37082960	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr17	12919662	12922819	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	2	-10.0329
chr3	103634037	103634117	LINE	L1MC1	L1	chr3L1MC1103634045	ProperStrand	1	chr3	103633860	103633950	SINE	ID_B1	B4	chr3ID_B1103633852	NonProperStrand	1	1	-inf
chr18	35557079	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-7.0493
chr3	101435358	101435407	Other	RMER1A	Other	chr3RMER1A101434962	NonProperStrand	1	chr9	44507644	44507675	protein_coding	Phldb1	exon	ENSMUSG00000048537	NonProperStrand	3	1	-inf
chr17	39846592	39847133	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr17	39847065	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	10	-22.6750
chr16	18240718	18240794	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr17	24720855	24720896	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-5.3085
chr2	71089842	71089859	protein_coding	Dync1i2	intron	ENSMUSG00000027012	NonProperStrand	4	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-8.2126
chr17	39846618	39846694	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr11	107547353	107547453	protein_coding	Helz	intron	ENSMUSG00000020721	ProperStrand	5	1	-10.6935
chr5	65782937	65783027	protein_coding-noncoding	Lias	utr5	ENSMUSG00000029199	ProperStrand	1	chr5	65782817	65782897	protein_coding	Lias	utr5	ENSMUSG00000029199	ProperStrand	1	1	-inf
chr7	19004848	19004864	LINE	L1_Mus2	L1	chr7L1_Mus219002686	ProperStrand	4	chr2	32963312	32963363	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-9.4267
chr7	61202351	61202441	LINE	L1_Mus3	L1	chr7L1_Mus361201568	NonProperStrand	1	chr7	61202545	61202625	Simple_repeat	(GA)n	Simple_repeat	chr7(GA)n61202514	NonProperStrand	1	1	-inf
chr6	125186478	125186528	protein_coding-noncoding	Cd27	utr3	ENSMUSG00000030336	ProperStrand	1	chr2	130276254	130276368	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-inf
chr5	133400187	133400269	LTR	ORR1B2	MaLR	chr5ORR1B2133400049	NonProperStrand	1	chr5	132624441	132624531	protein_coding	Auts2	intron	ENSMUSG00000029673	NonProperStrand	9	1	-inf
chr16	61056409	61056455	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	9	chr17	39847552	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	2	-5.4691
chr6	57957784	57957864	LINE	L1_Mus3	L1	chr6L1_Mus357955221	NonProperStrand	1	chr6	27446462	27446552	protein_coding	Grm8	intron	ENSMUSG00000024211	ProperStrand	7	1	-inf
chr4	43492783	43492921	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr4	43492945	43493058	SINE	B3	B2	chr4B343492960	NonProperStrand	40	15	-inf
chr3	129754724	129754742	protein_coding	Sec24b	intron	ENSMUSG00000001052	NonProperStrand	2	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-9.9953
chr2	5379294	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr4	145745107	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-3.4436
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr19	8888596	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	6	-4.8746
chr5	66137594	66137684	LTR	RMER13B	ERVK	chr5RMER13B66137474	ProperStrand	1	chr5	66137938	66138018	SINE	ID_B1	B4	chr5ID_B166137860	NonProperStrand	1	1	-inf
chr2	32963312	32963425	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr16	23110824	23110931	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	10	-6.3714
chr8	61763214	61763232	LINE	Lx8	L1	chr8Lx861762759	ProperStrand	3	chr17	35014972	35015048	protein_coding	C2	intron	ENSMUSG00000024371	NonProperStrand	6	1	-18.0393
chr4	18284960	18285050	LINE	Lx5	L1	chr4Lx518284980	NonProperStrand	1	chr4	18284748	18284827	LTR	RMER17A2	ERVK	chr4RMER17A218284014	ProperStrand	1	1	-inf
chr2	44861500	44861589	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	5	chr10	69970487	69970567	protein_coding	Fam13c	intron	ENSMUSG00000043259	NonProperStrand	3	1	-18.4526
chr17	20845271	20845361	LINE	Lx5	L1	chr17Lx520845192	ProperStrand	1	chr17	20845452	20845532	LINE	MusHAL1	L1	chr17MusHAL120845461	ProperStrand	1	1	-inf
chr8	109839299	109839329	protein_coding	Nfat5	intron	ENSMUSG00000003847	ProperStrand	1	chr4	132309940	132309986	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr13	114456052	114456132	LINE	L1Md_F2	L1	chr13L1Md_F2114455016	ProperStrand	1	chr13	114456195	114456285	LINE	L1Md_F2	L1	chr13L1Md_F2114456183	ProperStrand	1	1	-inf
chr13	51648213	51648273	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	chr4	132309975	132310065	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-4.5885
chr6	25992019	25992099	LINE	Lx3B	L1	chr6Lx3B25991413	NonProperStrand	1	chr6	12976346	12976436	SINE	B3A	B2	chr6B3A12976322	ProperStrand	1	1	-inf
chr4	43492825	43492920	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr5	114852000	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-4.3199
chr6	7519913	7520003	LINE	L1_Mm	L1	chr6L1_Mm7519919	NonProperStrand	1	chr6	7519715	7519795	LINE	L1_Mur1	L1	chr6L1_Mur17518674	ProperStrand	1	1	-inf
chr17	39847890	39847908	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr13	113861110	113861206	protein_coding	Cdc20b	intron	ENSMUSG00000078926	ProperStrand	1	1	-inf
chr2	130276236	130276344	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr17	24720771	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	3	-3.8191
chr11	60932015	60932095	LTR	MTC-int	MaLR	chr11MTC-int60931857	NonProperStrand	1	chr11	60921903	60931653	LTR	MTC	MaLR	chr11MTC60931428	NonProperStrand	4	1	-inf
chrX	37082963	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr4	123291341	123291412	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-6.0010
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	6227594	6227610	protein_coding	Gpha2	utr3	ENSMUSG00000024784	NonProperStrand	1	1	-inf
chr9	15313894	15313932	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	chr5	124463581	124463701	protein_coding	Vps37b	intron	ENSMUSG00000066278	ProperStrand	1	1	-inf
chr17	39848099	39848145	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	1	-5.2877
mmu-miR-1291	0	26	miRNA	mmu-miR-1291	.	mmu-miR-1291	ProperStrand	12	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-6.0939
chr2	38320690	38320780	DNA	MER5A1	MER1_type	chr2MER5A138320702	ProperStrand	1	chr2	38320564	38320644	DNA	MER5B	MER1_type	chr2MER5B38320520	NonProperStrand	1	1	-inf
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	chr2	90395141	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	2	-6.6905
chr3	18410172	18410262	LTR	MYSERV-int	ERVK	chr3MYSERV-int18410073	NonProperStrand	1	chr3	18409939	18410019	LTR	RMER4A	ERVK	chr3RMER4A18409908	NonProperStrand	1	1	-inf
chr14	69243520	69243536	protein_coding	Adam28	intron	ENSMUSG00000014725	ProperStrand	3	chr13	97190597	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.8129
chr2	90395157	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	40874910	40874928	protein_coding	Ubash3b	intron	ENSMUSG00000032020	NonProperStrand	2	1	-8.9527
chr17	39847895	39847913	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	7132773	7132789	protein_coding	Zfp418	intron	ENSMUSG00000034538	ProperStrand	1	1	-inf
chr17	39847981	39848033	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	46724646	46724662	lincRNA	Gm16736	intron	ENSMUSG00000086673	ProperStrand	3	1	-5.4090
chrX	112370929	112371019	LINE	L1_Mm	L1	chrXL1_Mm112370322	NonProperStrand	2	chr11	3158985	3159065	protein_coding-noncoding	Drg1	utr3	ENSMUSG00000020457	NonProperStrand	1	1	-inf
chr11	75310230	75310247	protein_coding	Prpf8	intron	ENSMUSG00000020850	ProperStrand	1	chr13	95330701	95330737	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	1	-inf
chr17	39847880	39847989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	53615460	53615485	SINE	B1F	Alu	chr9B1F53615405	ProperStrand	1	1	-inf
chr11	109011748	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	116843218	116843236	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	2	-4.0563
chr11	109011803	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	143083295	143083394	protein_coding	Mmd2	intron	ENSMUSG00000039533	ProperStrand	2	1	-7.3577
chr2	8742080	8742160	LINE	L1_Mur1	L1	chr2L1_Mur18741824	NonProperStrand	1	chr2	8742193	8742283	LINE	L1_Mur1	L1	chr2L1_Mur18742149	NonProperStrand	1	1	-inf
chr17	39846673	39846726	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr18	54699137	54699235	Simple_repeat	(TGGA)n	Simple_repeat	chr18(TGGA)n54699160	NonProperStrand	4	1	-5.2608
chr7	47022565	47022655	LTR	RLTR20C	ERVK	chr7RLTR20C47022440	NonProperStrand	1	chr7	47022755	47022835	LTR	RLTR20C	ERVK	chr7RLTR20C47022674	NonProperStrand	1	1	-inf
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	61956389	61956407	LTR	RLTR24	ERV1	chr7RLTR2461956344	ProperStrand	1	1	-inf
chr4	132352900	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr16	23110456	23110499	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-5.4799
chr9	39504801	39504891	LINE	Lx5	L1	chr9Lx539504662	ProperStrand	1	chr9	39504564	39504644	LTR	RLTR20A	ERVK	chr9RLTR20A39504304	ProperStrand	1	1	-inf
chr10	120176023	120176113	SINE	B2_Mm2	B2	chr10B2_Mm2120176029	ProperStrand	1	chr10	120176214	120176294	SINE	RSINE1	B4	chr10RSINE1120176185	ProperStrand	1	1	-inf
chr9	123461877	123462169	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr9	15313800	15315279	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	11	-4.2882
chr11	118774462	118774481	LINE	HAL1	L1	chr11HAL1118774205	NonProperStrand	3	chr17	39847188	39847213	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-7.5717
chr14	14863494	14865401	protein_coding	Atxn7	intron	ENSMUSG00000021738	ProperStrand	2	chr2	5379277	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-9.4768
chr1	170862688	170862768	LINE	L1Md_F2	L1	chr1L1Md_F2170861786	ProperStrand	1	chr1	172220914	172221004	LTR	ORR1D2	MaLR	chr1ORR1D2172220736	ProperStrand	1	1	-inf
chr3	39118423	39118441	LINE	L1Md_T	L1	chr3L1Md_T39117553	ProperStrand	3	chr5	121205105	121205142	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-9.9198
chr8	107293451	107293504	LINE	Lx6	L1	chr8Lx6107292846	NonProperStrand	1	chr17	39846475	39846512	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr2	169205985	169206065	LINE	Lx8	L1	chr2Lx8169205648	ProperStrand	1	chr2	169206384	169206474	Simple_repeat	(GA)n	Simple_repeat	chr2(GA)n169206398	ProperStrand	1	1	-inf
chr17	39846783	39846844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	80156693	80156774	protein_coding	Mob3a	intron	ENSMUSG00000003348	NonProperStrand	2	1	-7.0123
chr1	50934078	50934097	LINE	L1Md_A	L1	chr1L1Md_A50932573	ProperStrand	1	chr3	123507993	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-inf
chr3	60251955	60252035	LINE	L1Md_F	L1	chr3L1Md_F60249729	ProperStrand	1	chr3	107271304	107271394	protein_coding	Slc6a17	utr3	ENSMUSG00000027894	NonProperStrand	1	1	-inf
chr2	132263409	132263425	lincRNA	4921508D12Rik	intron	ENSMUSG00000027345	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr9	15313801	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	chr16	23110489	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-4.1979
chr11	35133511	35133529	protein_coding	Slit3	intron	ENSMUSG00000056427	NonProperStrand	7	chr19	8888537	8888591	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-7.9172
chr9	69348262	69348342	LINE	L1_Mus3	L1	chr9L1_Mus369347925	NonProperStrand	1	chr9	69348581	69348671	SINE	B3	B2	chr9B369348536	ProperStrand	1	1	-inf
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr19	8824507	8824864	protein_coding	Stx5a	exon	ENSMUSG00000010110	NonProperStrand	2	1	-16.2279
chr18	33795262	33795294	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr8	70895758	70895840	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-5.5456
chr5	115772370	115772450	LTR	MTA_Mm	MaLR	chr5MTA_Mm115772364	ProperStrand	1	chr5	115772532	115772622	SINE	B2_Mm1a	B2	chr5B2_Mm1a115772487	ProperStrand	1	1	-inf
chr14	32191953	32192022	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr13	44869606	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-4.3731
chr13	3986205	3986285	LTR	MURVY-int	ERV1	chr13MURVY-int3986189	ProperStrand	1	chr13	3985868	3985958	LTR	RLTR14-int	ERV1	chr13RLTR14-int3985819	ProperStrand	1	1	-inf
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	87268464	87268482	protein_coding	Antxr1	intron	ENSMUSG00000033420	NonProperStrand	4	1	-5.5999
chr17	45570758	45571066	lincRNA	B230354K17Rik	exon	ENSMUSG00000073393	NonProperStrand	5	chr5	121205023	121205103	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-8.7212
chr7	3250178	3250268	SINE	B2_Mm2	B2	chr7B2_Mm23250071	NonProperStrand	1	chr7	3250449	3250529	SINE	B2_Mm2	B2	chr7B2_Mm23250355	ProperStrand	1	1	-inf
chr17	4082728	4082818	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	21	chr1	163772519	163772599	protein_coding	AI848100	intron	ENSMUSG00000040297	ProperStrand	1	1	-inf
chr2	32963360	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr8	126944846	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	3	-5.9899
chr1	161037382	161037420	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	4	chr13	112578230	112578306	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-8.5381
chr18	6024954	6024970	protein_coding	Arhgap12	utr3	ENSMUSG00000041225	NonProperStrand	1	chr1	20562461	20562477	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	7	1	-inf
chr10	40258495	40258539	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	23	chr17	39843872	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	1	-7.2598
chr6	147021383	147021400	SINE	PB1D7	Alu	chr6PB1D7147021347	NonProperStrand	2	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr4	86928612	86928630	LTR	ORR1B1	MaLR	chr4ORR1B186928275	NonProperStrand	5	chr8	70895814	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-8.8977
chr13	95330636	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr4	56897652	56897717	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-6.6689
chr10	91182103	91182132	SINE	MIR	MIR	chr10MIR91182034	NonProperStrand	3	chr10	108363700	108363800	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	1	-15.8395
chr2	179772149	179772169	protein_coding	Psma7	exon	ENSMUSG00000027566	NonProperStrand	1	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-inf
chr12	87437681	87437817	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr8	72488205	72488222	protein_coding	Gatad2a	intron	ENSMUSG00000036180	NonProperStrand	1	1	-inf
chr7	3512197	3512287	SINE	B1_Mus1	Alu	chr7B1_Mus13512161	NonProperStrand	1	chr7	3511885	3511964	Simple_repeat	(TA)n	Simple_repeat	chr7(TA)n3511884	ProperStrand	1	1	-inf
chr17	56927158	56935336	protein_coding	Rfx2	intron	ENSMUSG00000024206	ProperStrand	2	chr5	114852016	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-10.8185
chr2	90395137	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	53213186	53213203	protein_coding	Zcchc4	utr3	ENSMUSG00000029179	NonProperStrand	7	1	-5.9461
chr7	19124558	19124648	LINE	L1VL4	L1	chr7L1VL419124531	NonProperStrand	1	chr7	19124881	19124961	LTR	IAPEY3_LTR	ERVK	chr7IAPEY3_LTR19124870	ProperStrand	1	1	-inf
chr17	34952012	34952075	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr2	130276315	130276348	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	1	-4.3372
chr9	110281345	110281364	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	chr2	158356459	158356560	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-4.7978
chr15	55004302	55004392	protein_coding	Deptor	intron	ENSMUSG00000022419	ProperStrand	2	chr15	54743487	54743567	protein_coding	Enpp2	intron	ENSMUSG00000022425	ProperStrand	1	1	-inf
chr16	43939106	43939122	protein_coding	2610015P09Rik	exon	ENSMUSG00000022701	NonProperStrand	1	chr2	130276254	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-inf
chr9	117586216	117586296	LTR	ORR1A2	MaLR	chr9ORR1A2117586083	ProperStrand	1	chr9	117585906	117585996	LTR	ORR1E	MaLR	chr9ORR1E117585817	NonProperStrand	1	1	-inf
chr7	92348720	92348800	LINE	L1_Mur2	L1	chr7L1_Mur292348723	NonProperStrand	1	chr7	92348286	92348376	LINE	L1_Mus1	L1	chr7L1_Mus192346976	NonProperStrand	1	1	-inf
chr5	32844227	32844244	antisense	Gm15614	.	ENSMUSG00000085234	ProperStrand	2	chr15	47970056	47970072	protein_coding	Csmd3	intron	ENSMUSG00000022311	NonProperStrand	16	1	-17.0606
chr1	82139994	82140074	LTR	MTE2b	MaLR	chr1MTE2b82139792	NonProperStrand	2	chr1	82140135	82140225	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n82140086	ProperStrand	2	2	-inf
chr2	168601392	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	1	-10.1068
chr19	8725116	8725132	SINE	B1_Mur2	Alu	chr19B1_Mur28725020	ProperStrand	2	chr13	44869601	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chr7	67691661	67691744	LINE	Lx7	L1	chr7Lx767691532	ProperStrand	1	chr17	86657864	86657883	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	10	1	-inf
chr3	123507960	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr9	15313801	15315282	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	7	-5.5892
chr6	22769307	22769387	LINE	L1Md_F2	L1	chr6L1Md_F222768883	NonProperStrand	1	chr6	67452715	67452805	LINE	L1Md_T	L1	chr6L1Md_T67452045	NonProperStrand	1	1	-inf
chr6	91487673	91487753	LTR	MLT1K	MaLR	chr6MLT1K91487592	NonProperStrand	1	chr6	91487882	91487972	SINE	B3A	B2	chr6B3A91487836	NonProperStrand	1	1	-inf
chr16	23111352	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-4.0748
chr16	23110396	23110449	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr14	32191927	32192023	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	1	-3.4528
chr3	123507994	123508056	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr6	115807974	115808100	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	3	-5.3505
chr9	123462128	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	150383797	150383861	protein_coding	Per3	intron	ENSMUSG00000028957	NonProperStrand	1	1	-inf
chr10	23785346	23785399	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr14	61310658	61310675	protein_coding	Spata13	exon	ENSMUSG00000021990	ProperStrand	3	1	-9.2859
chr19	6050995	6051027	protein_coding	Syvn1	exon	ENSMUSG00000024807	ProperStrand	1	chr2	90395147	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chrX	163590242	163590332	SINE	RSINE1	B4	chrXRSINE1163590212	NonProperStrand	1	chrX	163590415	163590495	Simple_repeat	(CAGA)n	Simple_repeat	chrX(CAGA)n163590397	NonProperStrand	1	1	-inf
chr11	55482748	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	1	-9.4668
chr17	39846580	39846711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr16	43269610	43269627	protein_coding	Zbtb20	intron	ENSMUSG00000022708	NonProperStrand	7	1	-9.9536
chr11	6528063	6528166	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr2	130276262	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	3	-7.5585
chr11	61751099	61751189	LTR	MYSERV6-int	ERVK	chr11MYSERV6-int61750965	NonProperStrand	1	chr11	61751385	61751465	LTR	RMER6B	ERVK	chr11RMER6B61751181	NonProperStrand	1	1	-inf
chr2	130276236	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	chr19	8888597	8888675	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	4	-5.2693
chr4	13604693	13604712	LINE	L1Md_F	L1	chr4L1Md_F13603253	ProperStrand	1	chr2	5379297	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr9	120130415	120130504	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr11	47223654	47223672	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	14	1	-7.8794
chr16	35222860	35222950	protein_coding	Adcy5	intron	ENSMUSG00000022840	ProperStrand	2	chr3	79632057	79632137	protein_coding	Tmem144	intron	ENSMUSG00000027956	ProperStrand	2	1	-21.5566
chr11	109011791	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	125809268	125809290	protein_coding	Scarb1	intron	ENSMUSG00000037936	NonProperStrand	2	1	-7.3577
chr11	100970442	100970534	protein_coding	Fam134c	intron	ENSMUSG00000017802	NonProperStrand	3	chr9	123461957	123462021	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-7.1766
chrX	43138067	43138147	LINE	Lx7	L1	chrXLx743137755	ProperStrand	1	chrX	43138274	43138364	LINE	Lx7	L1	chrXLx743138167	ProperStrand	1	1	-inf
chr12	26886150	26886169	LINE	Lx	L1	chr12Lx26886012	ProperStrand	1	chr16	11144112	11144202	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-inf
chr4	20978730	20978820	LINE	L1VL2	L1	chr4L1VL220978723	ProperStrand	1	chr4	20978488	20978568	LTR	RLTR23	ERV1	chr4RLTR2320978427	ProperStrand	1	1	-inf
chr10	88914578	88914668	LTR	MER21B	ERV1	chr10MER21B88914569	NonProperStrand	1	chr10	88914283	88914363	SINE	B2_Mm2	B2	chr10B2_Mm288914201	ProperStrand	1	1	-inf
chr11	109011727	109011767	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	43447593	43447610	protein_coding	Kynu	intron	ENSMUSG00000026866	NonProperStrand	4	1	-5.5999
chr17	39846733	39846782	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr18	37187340	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	5	1	-4.7701
chr17	39846953	39846974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	117360409	117360426	protein_coding	4833424O15Rik	intron	ENSMUSG00000033342	ProperStrand	1	1	-inf
chr19	34513006	34513086	LINE	Lx2	L1	chr19Lx234512995	NonProperStrand	1	chr19	34513394	34513484	LINE	Lx2	L1	chr19Lx234513115	ProperStrand	1	1	-inf
chr10	17124522	17124541	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr12	87437749	87437784	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	1	-9.0722
chr17	39846953	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chrX	159255806	159255825	protein_coding	Txlng	intron	ENSMUSG00000038344	ProperStrand	2	1	-7.0123
chr18	35557180	35557228	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr2	158359801	158359911	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-3.1808
chr12	85639088	85639180	protein_coding-noncoding	Ptgr2	utr5	ENSMUSG00000072946	ProperStrand	1	chr12	85638966	85639046	protein_coding	Ptgr2	exon	ENSMUSG00000072946	ProperStrand	3	1	-inf
chr12	17221255	17221345	SINE	B1_Mus1	Alu	chr12B1_Mus117221257	ProperStrand	1	chr12	17221145	17221225	SINE	B3A	B2	chr12B3A17221156	ProperStrand	1	1	-inf
chr7	29446499	29446574	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr16	23110833	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.3985
chr6	49236479	49236569	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	5	chr13	99495686	99495766	protein_coding	Fcho2	utr3	ENSMUSG00000041685	ProperStrand	1	1	-inf
chrX	74525149	74525229	DNA	URR1B	MER1_type	chrXURR1B74525117	NonProperStrand	1	chrX	74525522	74525612	LTR	MLT1F	MaLR	chrXMLT1F74525428	ProperStrand	1	1	-inf
chr7	49143812	49143892	LINE	L1VL4	L1	chr7L1VL449143695	NonProperStrand	1	chr1	72341997	72342087	protein_coding	Tmem169	intron	ENSMUSG00000026188	ProperStrand	1	1	-inf
chr3	37699225	37699315	LTR	MTEa	MaLR	chr3MTEa37699198	ProperStrand	1	chr3	37699564	37699644	Other	RMER1A	Other	chr3RMER1A37699475	ProperStrand	1	1	-inf
chr4	142514188	142514268	LINE	Lx9	L1	chr4Lx9142514075	NonProperStrand	1	chr4	142513636	142513726	LTR	MTEb	MaLR	chr4MTEb142513639	ProperStrand	1	1	-inf
chr9	52019848	52019938	LINE	Lx4A	L1	chr9Lx4A52019567	NonProperStrand	1	chr9	52020038	52020118	LINE	Lx4A	L1	chr9Lx4A52019851	NonProperStrand	1	1	-inf
chr8	27303609	27303699	LINE	L1M2	L1	chr8L1M227303560	NonProperStrand	1	chr8	27303715	27303795	SINE	B3A	B2	chr8B3A27303718	NonProperStrand	1	1	-inf
chr11	106501242	106501327	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	6	-4.8613
chr2	145069248	145069265	protein_coding	Slc24a3	intron	ENSMUSG00000063873	ProperStrand	6	chr19	8888575	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-8.2509
chr16	24984418	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	chr19	8888597	8888636	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-5.2306
chr8	40633692	40633772	LINE	L1Md_A	L1	chr8L1Md_A40629503	ProperStrand	1	chr8	40802085	40802175	LINE	Lx9	L1	chr8Lx940802066	ProperStrand	1	1	-inf
chr4	132309949	132309969	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr2	52858233	52858258	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	3	1	-8.6506
chr1	91366484	91366503	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	chr2	158356479	158356506	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-8.1303
chr3	88967484	88967564	SINE	B1_Mus1	Alu	chr3B1_Mus188967489	NonProperStrand	1	chr3	88967245	88967335	SINE	B3	B2	chr3B388967140	ProperStrand	1	1	-inf
chr11	109011658	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	126944846	126944966	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	8	-4.1644
chr10	23785346	23785427	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr16	68408987	68409005	SINE	B4A	B4	chr16B4A68408975	ProperStrand	1	1	-inf
chr2	32963296	32963384	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	1	-6.3374
chr3	139453529	139453609	LINE	Lx7	L1	chr3Lx7139453179	NonProperStrand	1	chr3	139453749	139453839	LINE	Lx7	L1	chr3Lx7139453734	NonProperStrand	1	1	-inf
chrX	51955863	51955943	LINE	L1_Mm	L1	chrXL1_Mm51955522	NonProperStrand	1	chrX	51956226	51956316	LTR	ETnERV2-int	ERVK	chrXETnERV2-int51956020	NonProperStrand	1	1	-inf
chr17	39847341	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	90395129	90395190	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	58	-9.3633
chr1	143236270	143236350	LTR	ORR1D2-int	MaLR	chr1ORR1D2-int143236223	ProperStrand	1	chr12	67665410	67665500	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr7	141448814	141448904	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr17	24720804	24720891	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	2	-6.4757
chr16	84209153	84209243	LINE	Lx7	L1	chr16Lx784208618	ProperStrand	1	chr16	84209399	84209479	LINE	Lx7	L1	chr16Lx784209220	NonProperStrand	1	1	-inf
chr17	39846097	39846195	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	NonProperStrand	45	chr1	158326695	158326714	protein_coding	9430070O13Rik	intron	ENSMUSG00000026601	NonProperStrand	2	1	-14.9523
mmu-miR-1912-5p	2	17	miRNA	mmu-miR-1912-5p	.	mmu-miR-1912-5p	NonProperStrand	9	chr16	23110769	23110887	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-5.4552
chr17	39843701	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	chr17	39843907	39844091	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	24	8	-inf
chr2	21845197	21845218	SINE	B1_Mur2	Alu	chr2B1_Mur221845191	ProperStrand	1	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	1	-inf
chr10	36507194	36507211	protein_coding	Hs3st5	intron	ENSMUSG00000044499	ProperStrand	4	chr7	28351518	28351580	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-12.4819
chr10	71204451	71204469	LTR	ORR1B1	MaLR	chr10ORR1B171204355	ProperStrand	1	chr7	127527900	127528000	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-inf
chr11	109011789	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr13	54190151	54190185	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	8	-11.7557
chr15	98519715	98519774	LTR	ORR1C1	MaLR	chr15ORR1C198519301	ProperStrand	11	chr19	8888596	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-6.9655
chr2	90395143	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr11	50171138	50171154	protein_coding	Cby3	intron	ENSMUSG00000050087	ProperStrand	1	1	-inf
chr10	74177616	74177706	LTR	LTRIS2	ERV1	chr10LTRIS274177441	NonProperStrand	1	chr10	74177332	74177412	LTR	ORR1C2-int	MaLR	chr10ORR1C2-int74177149	ProperStrand	1	1	-inf
chr2	127709149	127709229	protein_coding	Acoxl	intron	ENSMUSG00000027380	ProperStrand	3	chr8	25825255	25825345	protein_coding	Adam3	intron	ENSMUSG00000031553	ProperStrand	1	1	-inf
chr3	90253512	90253602	SINE	ID4	ID	chr3ID490253514	NonProperStrand	1	chr3	90253334	90253414	SINE	PB1D7	Alu	chr3PB1D790253305	ProperStrand	1	1	-inf
chr17	39847668	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr14	11745573	11745668	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	20	1	-8.1921
chr16	29958484	29958574	LTR	ORR1A2	MaLR	chr16ORR1A229958478	NonProperStrand	1	chr16	29958174	29958254	LTR	RLTR31A_Mm	ERVK	chr16RLTR31A_Mm29957797	ProperStrand	1	1	-inf
chr18	29154173	29154253	LINE	L1_Mm	L1	chr18L1_Mm29153774	NonProperStrand	1	chr18	29154545	29154635	LINE	Lx	L1	chr18Lx29154363	ProperStrand	1	1	-inf
chr5	33242647	33242663	protein_coding	Depdc5	intron	ENSMUSG00000037426	ProperStrand	2	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-10.2439
chr11	109011747	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	24942235	24942267	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	2	-4.4636
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	chr5	121205007	121205091	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	2	-9.7003
chr7	87012548	87012638	SINE	B1_Mus1	Alu	chr7B1_Mus187012517	ProperStrand	1	chr7	87012175	87012255	SINE	B4A	B4	chr7B4A87012174	ProperStrand	1	1	-inf
chr5	146260994	146261018	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr2	73012881	73012915	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	17	1	-5.0819
chr16	18240718	18240794	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr4	126853877	126853920	protein_coding	Dlgap3	intron	ENSMUSG00000042388	ProperStrand	2	1	-16.0659
chr11	69040393	69040458	protein_coding-noncoding	Gucy2e	utr3	ENSMUSG00000020890	NonProperStrand	2	chr2	130276254	130276344	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-11.4177
chr2	16397965	16398050	protein_coding	Plxdc2	intron	ENSMUSG00000026748	NonProperStrand	2	chr3	30765619	30765635	protein_coding	Gpr160	intron	ENSMUSG00000037661	NonProperStrand	3	1	-20.8207
chr6	123971885	123971965	LINE	L1_Rod	L1	chr6L1_Rod123971788	ProperStrand	1	chr6	123971566	123971656	Simple_repeat	(TA)n	Simple_repeat	chr6(TA)n123971590	NonProperStrand	1	1	-inf
chr6	131380326	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr5	146261239	146261279	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	1	-9.3646
chr17	39846777	39846877	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	60443349	60443405	lincRNA	Gm17423	intron	ENSMUSG00000090281	ProperStrand	1	1	-inf
chr2	22744882	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr5	146261152	146261228	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	2	-4.8384
chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr2	5379280	5379340	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.7608
chr16	23110380	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr17	70963682	70963827	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	2	-4.5231
chr10	23785399	23785454	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	6620318	6620371	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	1	-4.1137
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr10	80417216	80417319	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	6	1	-7.3053
chr14	50466031	50466066	LINE	L1Md_F2	L1	chr14L1Md_F250464365	NonProperStrand	5	chr16	61056409	61056437	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	9	1	-15.9630
chr9	123461851	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr13	97190540	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	22	-10.0156
chr2	5379279	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr13	102464698	102464719	protein_coding	Pik3r1	intron	ENSMUSG00000041417	NonProperStrand	2	1	-9.4768
chr13	57566499	57566579	protein_coding	Spock1	intron	ENSMUSG00000056222	NonProperStrand	4	chr13	57623812	57623902	protein_coding	Spock1	intron	ENSMUSG00000056222	ProperStrand	6	1	-17.3470
chr11	22387796	22387876	lincRNA	Gm12051	intron	ENSMUSG00000085021	ProperStrand	1	chr11	22134814	22134904	protein_coding	Ehbp1	intron	ENSMUSG00000042302	ProperStrand	5	1	-inf
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	168011157	168011180	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	1	-3.3361
chr13	79112203	79112293	LINE	L2	L2	chr13L279112083	NonProperStrand	1	chr13	79112359	79112439	LINE	MusHAL1	L1	chr13MusHAL179112319	ProperStrand	1	1	-inf
chr11	69669677	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr9	110281286	110281313	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-3.0195
chr11	109011656	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	24720773	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	14	-4.1416
chr9	65133704	65133720	LTR	RLTR13C2	ERVK	chr9RLTR13C265133457	NonProperStrand	1	chr15	34440790	34440922	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-inf
chr11	6528048	6528084	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	mmu-miR-6240	3	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-5.0240
chr2	90395139	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	123373844	123373865	protein_coding	Kdm2b	intron	ENSMUSG00000029475	NonProperStrand	7	1	-5.9461
chr11	109011787	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr12	85030874	85033920	protein_coding	Psen1	intron	ENSMUSG00000019969	NonProperStrand	1	1	-inf
chr9	56223737	56223772	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	8	chr16	23110837	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.3877
chr12	69168877	69168893	LINE	L1_Mus2	L1	chr12L1_Mus269168770	NonProperStrand	2	chr11	106501290	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-11.9816
chr4	43492794	43492874	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	NonProperStrand	11	chr4	43492937	43493027	SINE	B3	B2	chr4B343492960	ProperStrand	1	1	-inf
chr1	81992998	81993088	LTR	MT2B	ERVL	chr1MT2B81992669	NonProperStrand	1	chr4	135046860	135046940	protein_coding	Nipal3	exon	ENSMUSG00000028803	NonProperStrand	2	1	-inf
chr17	39847468	39847508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr8	78077942	78078028	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	ProperStrand	8	1	-3.3062
chr5	76184151	76184167	LTR	MLT1F2	MaLR	chr5MLT1F276184111	NonProperStrand	4	chr11	106501255	106501273	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-10.1932
chr12	59134060	59134193	LINE	L1Md_F2	L1	chr12L1Md_F259133464	ProperStrand	3	chr4	132974185	132974202	protein_coding	Slc9a1	intron	ENSMUSG00000028854	ProperStrand	8	1	-17.4197
chr11	77426300	77426380	SINE	B1F1	Alu	chr11B1F177426268	ProperStrand	1	chr11	77426050	77426140	Simple_repeat	(GGGTG)n	Simple_repeat	chr11(GGGTG)n77425932	NonProperStrand	1	1	-inf
chr2	133981160	133981179	LINE	L1_Mur3	L1	chr2L1_Mur3133980743	NonProperStrand	1	chr2	90395134	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr5	114817077	114817167	protein_coding-noncoding	Kctd10	utr3	ENSMUSG00000001098	ProperStrand	1	chr5	114817402	114817482	protein_coding	Kctd10	intron	ENSMUSG00000001098	ProperStrand	1	1	-inf
chr19	57197440	57197458	protein_coding	Ablim1	intron	ENSMUSG00000025085	NonProperStrand	6	chr2	130276289	130276316	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-8.7185
chr4	53302562	53302652	LINE	L1Md_T	L1	chr4L1Md_T53302519	ProperStrand	1	chr4	53302366	53302446	LTR	RLTR25B	ERVK	chr4RLTR25B53302322	ProperStrand	1	1	-inf
chr1	122357171	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr12	78350926	78351016	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	1	-7.1675
chr2	12229893	12229983	lincRNA	E030013I19Rik	intron	ENSMUSG00000086843	ProperStrand	1	chr2	12029489	12029569	protein_coding	Itga8	utr3	ENSMUSG00000026768	NonProperStrand	1	1	-inf
chr5	146261250	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr1	131573997	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-7.5522
chr4	126563970	126564935	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	chr16	23110854	23110878	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.7761
chr3	123507937	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr9	110281289	110281318	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	2	-4.0002
chr1	125595361	125595378	protein_coding	Dpp10	intron	ENSMUSG00000036815	NonProperStrand	10	chr16	23110917	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.9306
chr17	39847641	39847778	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	53417936	53417956	protein_coding	Snx24	intron	ENSMUSG00000024535	NonProperStrand	1	1	-inf
chr13	101350610	101350700	SINE	ID_B1	B4	chr13ID_B1101350588	NonProperStrand	1	chr1	132514239	132514319	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	13	1	-inf
chr17	24226167	24226257	protein_coding	Pdpk1	intron	ENSMUSG00000024122	ProperStrand	7	chr17	24570859	24570939	protein_coding	Eci1	intron	ENSMUSG00000024132	NonProperStrand	1	1	-inf
chr11	69667887	69667904	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr16	46411894	46411914	protein_coding	Pvrl3	intron	ENSMUSG00000022656	ProperStrand	1	1	-inf
chr12	102469141	102469157	LINE	L1Md_F2	L1	chr12L1Md_F2102467801	NonProperStrand	1	chr17	36657549	36657566	LTR	MT2_Mm	ERVL	chr17MT2_Mm36657269	ProperStrand	1	1	-inf
chr6	93286519	93286609	LINE	L1Md_F2	L1	chr6L1Md_F293286196	NonProperStrand	1	chr6	93286832	93286912	LINE	L1Md_F2	L1	chr6L1Md_F293286537	NonProperStrand	1	1	-inf
chr13	9834308	9834436	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-5.5118
chr9	5663038	5663128	LTR	MMETn-int	ERVK	chr9MMETn-int5660497	ProperStrand	1	chr13	24475909	24475989	protein_coding	Cmah	intron	ENSMUSG00000016756	NonProperStrand	2	1	-inf
chr15	45299242	45299263	LTR	RLTR9E	ERVK	chr15RLTR9E45299157	ProperStrand	3	chr2	90395138	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.8617
chr12	62019110	62019198	LINE	L1Md_A	L1	chr12L1Md_A62019073	NonProperStrand	1	chr12	62018857	62018937	LINE	Lx2B	L1	chr12Lx2B62018721	ProperStrand	1	1	-inf
chr11	106501255	106501320	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr11	20112668	20112686	protein_coding	Rab1	intron	ENSMUSG00000020149	ProperStrand	4	1	-10.1932
chr11	109011826	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	61987546	61987571	lincRNA	Pvt1	intron	ENSMUSG00000072566	NonProperStrand	8	1	-4.1268
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr13	44869594	44869637	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-3.8436
chr17	39846622	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr9	123461965	123462175	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	3	-16.2742
chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr18	77773993	77774085	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	6	1	-6.2750
chr17	50420135	50420155	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr11	113901593	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	1	-9.5180
chr17	13344390	13344409	LTR	RLTR18	ERVK	chr17RLTR1813344050	NonProperStrand	1	chr8	122230359	122230376	protein_coding	Atp2c2	intron	ENSMUSG00000034112	ProperStrand	4	1	-inf
chr6	15562062	15562152	LTR	ORR1B2	MaLR	chr6ORR1B215562017	NonProperStrand	1	chr6	15561886	15561966	SINE	B2_Mm2	B2	chr6B2_Mm215561828	NonProperStrand	1	1	-inf
chr11	109011748	109011780	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	1	-3.5018
chr9	123461825	123461874	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr8	25716850	25716867	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	4	1	-6.4942
chr15	36005851	36005940	protein_coding	Rgs22	intron	ENSMUSG00000037627	NonProperStrand	2	chr16	32274257	32274337	protein_coding	2310010M20Rik	utr3	ENSMUSG00000046345	NonProperStrand	1	1	-inf
chr2	100380390	100380480	LINE	L1Md_F2	L1	chr2L1Md_F2100380336	NonProperStrand	1	chr2	100380236	100380316	SINE	B1F	Alu	chr2B1F100380247	NonProperStrand	1	1	-inf
chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	chr16	23111393	23111423	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-3.2855
chr5	146260993	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr16	19883803	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	4	-6.8478
chr12	33496698	33496778	LTR	ORR1B2-int	MaLR	chr12ORR1B2-int33496324	ProperStrand	1	chr12	33497141	33497231	LTR	ORR1B2	MaLR	chr12ORR1B233497083	ProperStrand	1	1	-inf
chr2	36235344	36235389	LINE	L1Md_F2	L1	chr2L1Md_F236235166	NonProperStrand	1	chr2	5379272	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chrX	93888285	93888365	LINE	L1VL1	L1	chrXL1VL193888179	NonProperStrand	2	chrX	93888489	93888579	LINE	L1_Mur3	L1	chrXL1_Mur393888497	NonProperStrand	2	2	-inf
chr1	182020117	182020139	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	NonProperStrand	10	chr8	18933071	18933092	snoRNA	ENSMUSG00000088420_SNORA70	.	ENSMUSG00000088420	ProperStrand	1	1	-inf
chr4	22504471	22504487	LINE	Lx5	L1	chr4Lx522504360	NonProperStrand	2	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr6	3201485	3201505	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr2	91676082	91676098	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	11	1	-9.3229
chr17	39847659	39847906	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	mmu-miR-6238	2	20	miRNA	mmu-miR-6238	.	mmu-miR-6238	ProperStrand	2	2	-inf
chr4	132309991	132310069	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-4.7950
chr2	90395157	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	56897623	56897723	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	2	-4.6148
chr11	109011793	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	113901594	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	5	-7.2564
chr17	39846704	39846755	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	68998039	69000096	protein_coding	Alox8	exon	ENSMUSG00000020891	ProperStrand	1	1	-inf
chr12	77012373	77012463	protein_coding-noncoding	Syne2	utr5	ENSMUSG00000063450	ProperStrand	1	chr12	77011979	77012059	protein_coding	Syne2	intron	ENSMUSG00000063450	ProperStrand	1	1	-inf
chr9	123461798	123462166	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	123291341	123293279	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	3	-4.0898
chr11	109011656	109011878	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr13	97190541	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	28	-8.3600
chr13	67002047	67002127	protein_coding-noncoding	Uqcrb	utr3	ENSMUSG00000021520	ProperStrand	1	chr13	67001879	67001969	protein_coding	Uqcrb	intron	ENSMUSG00000021520	ProperStrand	1	1	-inf
chr17	39847279	39847298	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	136364888	136364944	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	10	1	-4.9250
chr1	178337232	178337294	Low_complexity	GA-rich	Low_complexity	chr1GA-rich178337211	NonProperStrand	1	chr16	23110837	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr19	43179100	43179180	protein_coding	Hpse2	intron	ENSMUSG00000074852	NonProperStrand	3	chr19	43177369	43177460	protein_coding	Hpse2	intron	ENSMUSG00000074852	ProperStrand	3	1	-19.6922
chr15	27747157	27747200	protein_coding	Trio	intron	ENSMUSG00000022263	ProperStrand	5	chr16	23110765	23110800	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-10.2430
chr18	60838026	60838116	LINE	Lx3_Mus	L1	chr18Lx3_Mus60837644	NonProperStrand	1	chr18	60838348	60838428	Simple_repeat	(GAAA)n	Simple_repeat	chr18(GAAA)n60838337	NonProperStrand	1	1	-inf
chr4	57953393	57953483	LTR	MTE2a	MaLR	chr4MTE2a57953397	ProperStrand	1	chr4	57952784	57952864	SINE	PB1D10	Alu	chr4PB1D1057952782	NonProperStrand	1	1	-inf
chr12	113131760	113131933	SINE	B3	B2	chr12B3113131872	NonProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr4	148908017	148908097	protein_coding	Ctnnbip1	intron	ENSMUSG00000028988	NonProperStrand	1	chr4	148850282	148850372	protein_coding	Nmnat1	intron	ENSMUSG00000028992	ProperStrand	3	1	-inf
chr17	35162571	35162684	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr7	109520122	109520198	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	3	-6.8254
chr8	78539950	78539982	LINE	L1_Mur3	L1	chr8L1_Mur378539547	NonProperStrand	1	chr17	39847097	39847188	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	4109901	4110499	protein_coding	Pitpnm1	exon	ENSMUSG00000024851	ProperStrand	1	1	-inf
chr17	39847243	39847333	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr5	143554177	143554208	protein_coding	Tnrc18	intron	ENSMUSG00000039477	ProperStrand	3	1	-13.1429
chr6	71882621	71882692	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	3	chr2	158358395	158358473	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-11.6723
chr5	146261152	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr5	129789648	129789673	Simple_repeat	(CGGGG)n	Simple_repeat	chr5(CGGGG)n129789606	ProperStrand	10	1	-6.1555
chr9	99093609	99093699	LINE	L1MB2	L1	chr9L1MB299093541	NonProperStrand	1	chr9	99093905	99093985	SINE	ID_B1	B4	chr9ID_B199093832	NonProperStrand	1	1	-inf
chr16	61056409	61056436	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	9	chr17	39847040	39847091	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-3.5690
chr7	127527911	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	chr16	23110835	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.3161
chr16	9201719	9201799	LINE	L1_Mus3	L1	chr16L1_Mus39201572	ProperStrand	1	chr16	9785853	9785943	protein_coding	Grin2a	intron	ENSMUSG00000059003	NonProperStrand	5	1	-inf
chr17	39846373	39846390	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	155250203	155250219	protein_coding	Cpsf3l	intron	ENSMUSG00000029034	ProperStrand	1	1	-inf
chr15	61984562	61984578	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	8	chr19	8888597	8888628	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-7.6323
chr12	48386292	48386382	LINE	L1Md_T	L1	chr12L1Md_T48381020	NonProperStrand	1	chr12	48386699	48386779	LINE	L1Md_T	L1	chr12L1Md_T48386671	NonProperStrand	1	1	-inf
chr2	90395141	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	16671754	16671770	protein_coding	Zfp541	intron	ENSMUSG00000078796	NonProperStrand	1	1	-inf
chr5	67468069	67468159	DNA	MER2	MER2_type	chr5MER267467991	ProperStrand	1	chr11	78679719	78679799	SINE	B1_Mur4	Alu	chr11B1_Mur478679736	NonProperStrand	1	1	-inf
chr17	26786344	26786362	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	12	chr11	69669695	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-6.6925
chr19	8723999	8724061	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr13	112578190	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	2	-8.2284
chr3	14654681	14654699	protein_coding	Car13	intron	ENSMUSG00000027555	ProperStrand	3	chr16	23110837	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr5	31196237	31196533	protein_coding-noncoding	Agbl5	utr5	ENSMUSG00000029165	ProperStrand	2	chr5	31197044	31197228	protein_coding	Agbl5	intron	ENSMUSG00000029165	ProperStrand	2	2	-inf
chr17	39847277	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	15	1	-4.1212
chr17	39847953	39848043	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr8	123134522	123134539	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	59	1	-6.0253
chr7	47188504	47188649	LTR	ORR1A4	MaLR	chr7ORR1A447188454	NonProperStrand	13	chr7	47188315	47188456	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	10	5	-24.8953
chr3	152364935	152365015	LTR	MER34	ERV1	chr3MER34152364948	NonProperStrand	1	chr3	152364812	152364902	SINE	B1_Mm	Alu	chr3B1_Mm152364744	ProperStrand	1	1	-inf
chr8	71897775	71897855	Unknown	MurSatRep1	Unknown	chr8MurSatRep171897344	ProperStrand	1	chr8	71897588	71897678	protein_coding	Gm10311	exon	ENSMUSG00000071083	ProperStrand	1	1	-inf
chr5	110286512	110286592	DNA	Kanga2_a	Tc2	chr5Kanga2_a110286420	ProperStrand	1	chr5	110286758	110286848	SINE	B1_Mus2	Alu	chr5B1_Mus2110286680	NonProperStrand	1	1	-inf
chr11	109011745	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	87437687	87437812	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	5	-4.5645
chr17	39846660	39846687	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr7	86674274	86674306	lincRNA	AI854517	intron	ENSMUSG00000085554	ProperStrand	1	1	-inf
chr4	149154847	149154927	antisense	Gm16188	.	ENSMUSG00000085368	NonProperStrand	2	chr4	149154373	149154463	lincRNA	Gm13073	intron	ENSMUSG00000084807	ProperStrand	1	1	-inf
chr1	162697535	162697578	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	6	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-7.3053
chr4	44993361	44993451	SINE	MIR	MIR	chr4MIR44993335	ProperStrand	1	chr4	44993527	44993607	SINE	MIRb	MIR	chr4MIRb44993542	ProperStrand	1	1	-inf
chr5	115676128	115676199	SINE	RSINE1	B4	chr5RSINE1115676084	NonProperStrand	1	chr1	136364889	136364951	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	10	1	-inf
chr17	39848008	39848033	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chrX	70593667	70593684	protein_coding	Zfp275	intron	ENSMUSG00000031365	NonProperStrand	1	1	-inf
chr17	39846847	39846930	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr12	54135151	54135189	protein_coding	Akap6	intron	ENSMUSG00000061603	ProperStrand	11	1	-3.1848
chr17	39846941	39846991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr19	5800411	5800491	lincRNA	Malat1	exon	ENSMUSG00000092341	NonProperStrand	5	1	-10.6935
chr17	12922789	12922835	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	chr15	91888156	91888172	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	7	1	-11.4681
chr8	43649755	43649845	LTR	RMER16-int	ERVK	chr8RMER16-int43649747	NonProperStrand	1	chr8	43650038	43650118	LTR	RMER16-int	ERVK	chr8RMER16-int43650042	ProperStrand	1	1	-inf
chr6	131380325	131380346	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr5	138133922	138133938	SINE	B3	B2	chr5B3138133868	NonProperStrand	1	1	-inf
chr7	133059327	133059456	protein_coding	Gsg1l	intron	ENSMUSG00000046182	NonProperStrand	4	chr8	85409701	85409717	protein_coding	Rnf150	intron	ENSMUSG00000047747	NonProperStrand	6	1	-17.3470
chr3	122373240	122373320	DNA	MER46C	MER2_type	chr3MER46C122373126	NonProperStrand	1	chr7	103550498	103550588	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	16	1	-inf
chr1	44989336	44989426	LINE	L1Md_F2	L1	chr1L1Md_F244989061	NonProperStrand	1	chr1	44989534	44989614	LINE	L1_Mus3	L1	chr1L1_Mus344989537	ProperStrand	1	1	-inf
chr1	52390893	52390983	LINE	Lx9	L1	chr1Lx952390552	ProperStrand	1	chr1	52390477	52390557	LTR	ORR1C1	MaLR	chr1ORR1C152390214	NonProperStrand	1	1	-inf
chrX	5398924	5399004	LINE	L1_Mm	L1	chrXL1_Mm5398816	ProperStrand	1	chrX	5398650	5398740	LINE	Lx7	L1	chrXLx75398498	ProperStrand	1	1	-inf
chr2	142846851	142846931	LINE	L1MB3	L1	chr2L1MB3142846800	ProperStrand	1	chr2	142396633	142396723	pseudogene	Rpl26-ps5	.	ENSMUSG00000081125	NonProperStrand	1	1	-inf
chr6	37256002	37256082	LTR	MTD-int	MaLR	chr6MTD-int37255985	ProperStrand	1	chr6	37255697	37255787	LTR	MTD	MaLR	chr6MTD37255631	ProperStrand	1	1	-inf
chr5	114852120	114852151	protein_coding	Ube3b	intron	ENSMUSG00000029577	NonProperStrand	3	chr2	5379283	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-8.3841
chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr10	127132483	127132502	protein_coding	Tmem194	exon	ENSMUSG00000040195	NonProperStrand	1	1	-inf
chr12	87437703	87437803	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr7	28351558	28351577	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-6.4354
chr7	62377768	62377788	protein_coding	Luzp2	intron	ENSMUSG00000063297	NonProperStrand	3	chr16	23110907	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr7	135405688	135405768	LINE	Lx7	L1	chr7Lx7135405460	ProperStrand	1	chr7	135406031	135406121	Low_complexity	GA-rich	Low_complexity	chr7GA-rich135406053	ProperStrand	1	1	-inf
chr11	109012016	109012047	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr18	35557079	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-3.3823
chr11	97781663	97781725	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr4	145745109	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-6.3859
chr13	12300697	12300722	protein_coding	Mtr	intron	ENSMUSG00000021311	ProperStrand	4	chr16	11144058	11144148	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-13.1165
chr17	88593959	88594049	LTR	ERVL-B4-int	ERVL	chr17ERVL-B4-int88593893	ProperStrand	1	chr17	88593753	88593833	LTR	MLT1F2	MaLR	chr17MLT1F288593601	ProperStrand	1	1	-inf
chr11	109011694	109011717	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	109505155	109505176	LINE	L1Md_F2	L1	chr6L1Md_F2109504893	ProperStrand	1	1	-inf
chr6	126708359	126708377	Low_complexity	GA-rich	Low_complexity	chr6GA-rich126708316	NonProperStrand	1	chr9	123462014	123462046	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr14	88520247	88520327	LINE	L1_Mus1	L1	chr14L1_Mus188520003	ProperStrand	1	chr14	88519833	88519923	SINE	B1_Mm	Alu	chr14B1_Mm88519806	ProperStrand	1	1	-inf
chr11	45155394	45155412	LINE	L1MD	L1	chr11L1MD45155391	ProperStrand	1	mmu-miR-6240	5	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-inf
chr19	5175727	5175807	protein_coding	Pacs1	intron	ENSMUSG00000024855	ProperStrand	3	chr19	4387329	4387419	protein_coding	Kdm2a	intron	ENSMUSG00000054611	NonProperStrand	5	1	-18.4523
chr11	109011676	109011718	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	6619844	6619907	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	1	-3.3361
chr9	81315939	81316029	LINE	L1Md_F2	L1	chr9L1Md_F281315766	ProperStrand	1	chr9	81315628	81315708	LINE	Lx2A1	L1	chr9Lx2A181313627	NonProperStrand	1	1	-inf
chr4	126156992	126157082	DNA	Tigger7	MER2_type	chr4Tigger7126157006	ProperStrand	1	chr4	126157265	126157345	DNA	Tigger7	MER2_type	chr4Tigger7126157135	ProperStrand	1	1	-inf
chr10	23785349	23785423	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr10	39959641	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	1	-5.7749
chr1	4776668	4776699	Other	RMER1B	Other	chr1RMER1B4776580	ProperStrand	1	chr9	123461826	123461929	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr15	81485757	81485847	LTR	RMER15-int	ERVL	chr15RMER15-int81485201	ProperStrand	1	chr15	81485939	81486019	LTR	RMER15-int	ERVL	chr15RMER15-int81485929	ProperStrand	1	1	-inf
chr6	115807974	115808008	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr8	70501275	70503348	protein_coding	Psd3	intron	ENSMUSG00000030465	NonProperStrand	14	1	-8.9027
chr9	123461802	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr2	5379267	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	19	-4.7290
chr7	93941786	93941866	LINE	L1Md_F2	L1	chr7L1Md_F293940053	ProperStrand	1	chr7	93941900	93941990	LINE	L1Md_F2	L1	chr7L1Md_F293941803	ProperStrand	2	1	-inf
chr6	131380325	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	6	1	-13.3588
chr3	49409652	49409732	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int49409211	NonProperStrand	1	chr3	49409843	49409933	LTR	ETnERV2-int	ERVK	chr3ETnERV2-int49409848	NonProperStrand	1	1	-inf
chr5	115445800	115445817	antisense	Gm13824	.	ENSMUSG00000086054	NonProperStrand	1	chr16	23110835	23110866	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr6	125102294	125102443	protein_coding-noncoding	Iffo1	utr5	ENSMUSG00000038271	ProperStrand	1	chr13	97190550	97190604	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr13	112827921	112828011	DNA	RCHARR1	MER1_type	chr13RCHARR1112827619	ProperStrand	1	chr13	112828067	112828147	LINE	Lx8	L1	chr13Lx8112828044	NonProperStrand	1	1	-inf
chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr4	45459577	45459596	protein_coding	Shb	intron	ENSMUSG00000044813	NonProperStrand	8	1	-5.6991
chr7	5409559	5409675	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	4	chr10	122565811	122565974	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	2	-22.0252
chr11	6620374	6620440	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr11	109012011	109012041	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	1	-6.6373
chr9	120130486	120130560	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr16	35981720	35981763	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	6	1	-9.6714
chr3	101432633	101432653	SINE	B3	B2	chr3B3101432557	ProperStrand	2	chr9	123461978	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr17	94735707	94735797	LINE	Lx5	L1	chr17Lx594735376	ProperStrand	1	chr17	94735255	94735335	LTR	RMER17B	ERVK	chr17RMER17B94734418	ProperStrand	1	1	-inf
chr17	39846353	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	32963280	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	15	-4.2160
chr15	75748016	75748033	protein_coding	Pycrl	intron	ENSMUSG00000022571	NonProperStrand	8	chr7	109521279	109521355	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-7.4541
chrX	74272588	74272620	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr5	121205022	121205101	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-3.8885
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	3	-5.6961
chr5	146863291	146863371	LINE	L1VL2	L1	chr5L1VL2146863295	NonProperStrand	1	chr5	146863456	146863546	SINE	B1_Mm	Alu	chr5B1_Mm146863469	NonProperStrand	1	1	-inf
chr12	59040409	59040447	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	4	chr13	97190552	97190620	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.1245
chr16	23110755	23110799	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr1	84747178	84747197	protein_coding	Trip12	intron	ENSMUSG00000026219	ProperStrand	4	1	-10.7525
chr11	109012012	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr2	158356446	158356562	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-4.0423
chr9	123461851	123462183	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr13	44869576	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	17	-5.7800
chr17	39845858	39845904	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chr9	59303012	59303085	protein_coding	Arih1	intron	ENSMUSG00000025234	NonProperStrand	2	1	-12.3250
chr5	146261022	146261061	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr5	24380764	24380781	antisense	Gm15552	.	ENSMUSG00000087314	ProperStrand	1	1	-inf
chr3	97973887	97973967	LINE	L1_Mur3	L1	chr3L1_Mur397973700	NonProperStrand	1	chr3	97973261	97973351	LINE	Lx6	L1	chr3Lx697971790	ProperStrand	1	1	-inf
chr17	20875753	20875833	LINE	L1Md_F3	L1	chr17L1Md_F320875570	ProperStrand	1	chr17	20876379	20876469	LTR	MYSERV16_I-int	ERVK	chr17MYSERV16_I-int20876363	ProperStrand	1	1	-inf
chr8	76526823	76526913	LINE	L1Md_F2	L1	chr8L1Md_F276522026	NonProperStrand	1	chr8	76527489	76527569	LINE	L1Md_F2	L1	chr8L1Md_F276526979	NonProperStrand	1	1	-inf
chr6	12222044	12222124	SINE	B3A	B2	chr6B3A12222052	NonProperStrand	1	chr6	12221661	12221751	SINE	PB1D10	Alu	chr6PB1D1012221647	ProperStrand	1	1	-inf
chr1	100180181	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	6	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-7.3053
chr17	39847284	39847308	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr3	55463002	55466613	protein_coding	Nbea	intron	ENSMUSG00000027799	NonProperStrand	5	2	-10.7110
chr11	106501251	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr2	168601393	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	1	-6.7644
chr5	146260994	146261018	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr8	34591901	34591917	LTR	ORR1D2	MaLR	chr8ORR1D234591887	ProperStrand	1	1	-inf
chrX	122023337	122023427	LINE	Lx3C	L1	chrXLx3C122023353	ProperStrand	1	chrX	122023017	122023097	LTR	ORR1B1	MaLR	chrXORR1B1122022855	ProperStrand	1	1	-inf
chr11	55482699	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr17	39847404	39848065	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	14	-12.4903
chr10	122565827	122565917	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr14	33967628	33967708	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	1	-11.2888
chr16	70134083	70134163	LTR	RMER6D	ERVK	chr16RMER6D70134051	ProperStrand	1	chr16	32989179	32989269	protein_coding	Lrch3	intron	ENSMUSG00000022801	ProperStrand	1	1	-inf
chr8	55861343	55861360	LINE	Lx8	L1	chr8Lx855861310	ProperStrand	3	chr19	8252248	8252284	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	1	-15.9643
chr17	39847623	39847695	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	82240754	82240777	protein_coding	Nfib	intron	ENSMUSG00000008575	ProperStrand	3	1	-5.4090
chr5	85939306	85939327	LINE	L1Md_F	L1	chr5L1Md_F85936677	NonProperStrand	6	chr13	44869607	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.2830
chr17	39847654	39847674	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	126844911	126844928	protein_coding	R3hdm2	intron	ENSMUSG00000025404	NonProperStrand	1	1	-inf
chr9	53427674	53427764	protein_coding	Cul5	intron	ENSMUSG00000032030	ProperStrand	1	chr9	54096759	54096839	protein_coding	Cyp19a1	intron	ENSMUSG00000032274	NonProperStrand	2	1	-inf
chrX	37082911	37082942	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr4	118236395	118236417	protein_coding	Wdr65	intron	ENSMUSG00000028730	ProperStrand	2	1	-13.4670
chr11	6619844	6619878	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	chr5	114851994	114852017	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-6.6586
chr2	90395142	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr14	61643443	61682113	protein_coding	Tnfrsf19	intron	ENSMUSG00000060548	ProperStrand	1	1	-inf
chr8	73956720	73956800	LINE	L1_Mur1	L1	chr8L1_Mur173956618	NonProperStrand	1	chr7	5409436	5409526	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	NonProperStrand	4	1	-inf
chr14	73402397	73402477	LINE	L1MC1	L1	chr14L1MC173402357	NonProperStrand	1	chr14	73402275	73402365	LTR	ORR1A4	MaLR	chr14ORR1A473402015	NonProperStrand	1	1	-inf
chr9	120130468	120130504	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr1	63177152	63177188	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	1	-6.8691
chr4	44013731	44013821	LINE	Lx7	L1	chr4Lx744013454	NonProperStrand	1	chr4	44014020	44014100	LINE	Lx7	L1	chr4Lx744013971	NonProperStrand	1	1	-inf
chr16	35981607	35981658	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	5	-7.0379
chr9	19657619	19657743	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	22	chr14	33967607	33967708	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	2	-17.9677
chr17	56317108	56318110	protein_coding	D17Wsu104e	intron	ENSMUSG00000019579	NonProperStrand	1	chr18	10590487	10590505	protein_coding	Esco1	intron	ENSMUSG00000024293	NonProperStrand	1	1	-inf
chr11	109011748	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	62604511	62604533	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	5	1	-5.1059
chr9	120130474	120130504	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr15	71794339	71794369	protein_coding	Col22a1	intron	ENSMUSG00000079022	NonProperStrand	5	1	-10.0755
chr5	130358460	130358540	protein_coding-noncoding	Chchd2	utr3	ENSMUSG00000070493	ProperStrand	1	chr5	130358043	130358133	protein_coding	Phkg1	intron	ENSMUSG00000025537	ProperStrand	1	1	-inf
chr4	132510149	132510239	SINE	B3	B2	chr4B3132510149	ProperStrand	1	chr4	132510371	132510451	SINE	B4A	B4	chr4B4A132510363	ProperStrand	1	1	-inf
chr11	109011748	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	88616639	88629891	pseudogene	5830417I10Rik	.	ENSMUSG00000078684	ProperStrand	4	1	-5.5999
chr9	115808645	115808664	LINE	L1Md_F2	L1	chr9L1Md_F2115807899	ProperStrand	1	chr17	39847702	39847823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr1	166926394	166926474	LINE	Lx7	L1	chr1Lx7166926074	ProperStrand	1	chr1	167037627	167037717	LTR	RMER17C	ERVK	chr1RMER17C167037629	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	15	1	-5.3997
chr11	109011748	109011859	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	120130419	120130538	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	8	-3.7947
chr11	109011750	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	136800007	136800026	LINE	L1_Mus1	L1	chr3L1_Mus1136799918	NonProperStrand	1	1	-inf
chr11	60213284	60213374	LTR	RMER15-int	ERVL	chr11RMER15-int60213013	ProperStrand	1	chr11	60213473	60213553	LTR	RMER15	ERVL	chr11RMER1560213444	ProperStrand	1	1	-inf
chr17	39847339	39847904	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	3201432	3201572	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	41	-22.7142
mmu-miR-1912-5p	2	17	miRNA	mmu-miR-1912-5p	.	mmu-miR-1912-5p	NonProperStrand	9	chr2	5379282	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-5.9341
chr8	13417090	13417240	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	11	chr14	33967585	33967777	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	2	-20.1521
chr1	147306470	147306550	LINE	L1Md_F2	L1	chr1L1Md_F2147306138	NonProperStrand	2	chr1	147306620	147306710	LINE	Lx9	L1	chr1Lx9147306646	ProperStrand	2	2	-inf
chr1	144518011	144518101	DNA	MER53	hAT	chr1MER53144517955	NonProperStrand	1	chr1	144518209	144518289	LTR	LTR16B1	ERVL	chr1LTR16B1144518126	ProperStrand	1	1	-inf
chr9	123461991	123462013	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-3.4041
chr11	97781694	97781747	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr5	146261007	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	3	-3.8766
chr10	13314445	13314535	LINE	Lx9	L1	chr10Lx913314419	NonProperStrand	1	chr10	13314245	13314325	LTR	RLTR21	ERVK	chr10RLTR2113314244	ProperStrand	1	1	-inf
chr3	97711299	97711389	protein_coding-noncoding	Sec22b	utr5	ENSMUSG00000027879	ProperStrand	1	chr3	97711161	97711241	protein_coding	Sec22b	exon	ENSMUSG00000027879	ProperStrand	1	1	-inf
chr9	19657527	19657895	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	22	chr8	13417089	13417199	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	11	3	-22.8866
chr19	8724035	8724061	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chrX	74272498	74272567	SINE	B3	B2	chrXB374272477	ProperStrand	54	1	-9.1501
chr2	154081967	154082057	LINE	Lx8	L1	chr2Lx8154081798	NonProperStrand	1	chr2	154082457	154082537	LINE	Lx8	L1	chr2Lx8154082334	NonProperStrand	1	1	-inf
chr17	24510492	24510563	protein_coding	Abca3	intron	ENSMUSG00000024130	NonProperStrand	3	chr13	44869607	44869684	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-8.8788
chr17	39847477	39847567	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	118792999	118793016	SINE	B4	B4	chr2B4118792813	ProperStrand	1	1	-inf
chr11	109011802	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr17	39847864	39847956	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	1	-9.0768
chr2	33392065	33392145	SINE	RSINE1	B4	chr2RSINE133392082	NonProperStrand	1	chr3	51496067	51496157	protein_coding	Maml3	intron	ENSMUSG00000061143	NonProperStrand	3	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr14	123095420	123095438	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	1	-10.1367
chr16	23954536	23954616	LTR	RLTR10A	ERVK	chr16RLTR10A23954471	ProperStrand	1	chr16	23955084	23955174	SINE	B4A	B4	chr16B4A23955108	ProperStrand	1	1	-inf
chr2	130276236	130276316	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr6	115807974	115808114	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	2	-5.4614
chr13	25141221	25141301	SINE	B3	B2	chr13B325141205	ProperStrand	1	chr13	25141039	25141129	SINE	ID_B1	B4	chr13ID_B125140985	ProperStrand	1	1	-inf
chr11	53033720	53033800	LTR	MTC	MaLR	chr11MTC53033550	NonProperStrand	5	chr11	53033821	53033913	SINE	B3A	B2	chr11B3A53033771	ProperStrand	5	5	-inf
chr5	123970588	123970668	protein_coding-noncoding	Diablo	utr3	ENSMUSG00000029433	NonProperStrand	1	chr5	123970810	123970900	protein_coding	Diablo	intron	ENSMUSG00000029433	NonProperStrand	1	1	-inf
chr5	121205022	121205087	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr13	49684398	49684434	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-4.3197
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	chr17	24720838	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-5.8294
chr11	109011745	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	105031128	105031350	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	4	-4.3068
chr6	82486801	82486822	protein_coding	Tacr1	intron	ENSMUSG00000030043	ProperStrand	3	chr2	169887081	169887099	protein_coding	Tshz2	intron	ENSMUSG00000047907	ProperStrand	5	1	-18.4523
chr17	39848099	39848155	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr4	120553008	120553957	protein_coding	Rims3	intron	ENSMUSG00000032890	ProperStrand	10	1	-6.9748
chr17	39845526	39845664	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	43	chr17	22615632	22615649	LINE	L1_Mus2	L1	chr17L1_Mus222615334	ProperStrand	1	1	-inf
chr10	81245912	81246002	LINE	L1Md_A	L1	chr10L1Md_A81245514	ProperStrand	1	chr10	81245449	81245529	LTR	RMER19B	ERVK	chr10RMER19B81245006	ProperStrand	1	1	-inf
chr9	123461951	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr3	86100564	86100623	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	13	1	-4.0251
chr9	68766614	68766704	protein_coding	Rora	intron	ENSMUSG00000032238	ProperStrand	12	chr5	140398562	140398642	protein_coding	Elfn1	intron	ENSMUSG00000048988	ProperStrand	1	1	-inf
chr11	106501243	106501324	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	4	-4.4829
chr4	132310239	132310270	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr15	7194553	7194570	protein_coding	Egflam	intron	ENSMUSG00000042961	ProperStrand	5	1	-7.4568
chr12	31544320	31544412	LINE	Lx7	L1	chr12Lx731544312	NonProperStrand	1	chr12	31544069	31544149	LINE	Lx8	L1	chr12Lx831543808	NonProperStrand	1	1	-inf
chr11	109011748	109011767	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	75166525	75166549	LINE	L1MCc	L1	chr5L1MCc75166395	NonProperStrand	1	1	-inf
chr4	132309463	132310372	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr16	23110820	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	20	-9.6624
chr9	100502157	100502247	protein_coding	Stag1	intron	ENSMUSG00000037286	NonProperStrand	1	chr9	101012933	101013013	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	ProperStrand	3	1	-inf
chr17	12992129	12992147	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	6	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.5517
chr1	176945979	176946059	LINE	L1Md_F2	L1	chr1L1Md_F2176945524	NonProperStrand	1	chr1	176946761	176946851	LINE	L1Md_F2	L1	chr1L1Md_F2176946477	ProperStrand	1	1	-inf
chr6	131380326	131380409	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr6	46996883	46996905	protein_coding	Cntnap2	intron	ENSMUSG00000039419	ProperStrand	26	1	-10.2871
chr17	88069572	88069662	LTR	RMER17C	ERVK	chr17RMER17C88069465	NonProperStrand	1	chrX	134697174	134697254	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	ProperStrand	4	1	-inf
chr17	39847278	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr16	33726447	33726465	protein_coding	Heg1	exon	ENSMUSG00000075254	NonProperStrand	6	1	-5.9886
chr11	97781638	97781747	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr2	90395138	90395191	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	4	-3.5871
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr2	5379297	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.9839
chr5	146260993	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr4	132309466	132310325	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	10	-5.5524
chr3	14533910	14533926	protein_coding	Lrrcc1	utr5	ENSMUSG00000027550	ProperStrand	1	chr9	65122771	65122787	protein_coding	Cilp	intron	ENSMUSG00000042254	NonProperStrand	1	1	-inf
chr17	70963671	70963824	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr9	15315201	15315329	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	2	-7.0435
chr1	25062026	25062106	LINE	Lx5	L1	chr1Lx525061980	NonProperStrand	2	chr1	25061789	25061879	SINE	PB1D10	Alu	chr1PB1D1025061786	NonProperStrand	2	2	-inf
chr17	35162577	35162687	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr19	8888596	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	2	-4.8163
chr2	103555564	103555654	protein_coding-noncoding	Abtb2	utr5	ENSMUSG00000032724	NonProperStrand	1	chr2	103555818	103555898	protein_coding	Abtb2	intron	ENSMUSG00000032724	NonProperStrand	2	1	-inf
chr17	39847440	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	28582986	28583018	protein_coding	Ak8	intron	ENSMUSG00000026807	NonProperStrand	5	1	-4.2576
chr11	109011803	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr14	75847946	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	1	-8.6984
chr11	109011790	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	23180388	23180406	protein_coding	Bmper	intron	ENSMUSG00000031963	NonProperStrand	5	1	-5.1059
chr5	146261006	146261034	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-4.9688
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	chr4	125711868	125711884	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	1	-10.7458
chr4	132352898	132352956	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr17	50920585	50920601	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	1	-6.3070
chr1	174822058	174822147	LINE	L1VL4	L1	chr1L1VL4174820485	NonProperStrand	1	chr1	174330687	174330767	SINE	B2_Mm2	B2	chr1B2_Mm2174330674	NonProperStrand	1	1	-inf
chr2	74698427	74698455	protein_coding	Mtx2	intron	ENSMUSG00000027099	ProperStrand	4	chr5	114852014	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-9.0327
chr11	35973661	35973788	protein_coding	Odz2	intron	ENSMUSG00000049336	NonProperStrand	18	chr7	99441184	99441200	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	26	1	-11.0388
chr13	89692504	89692521	protein_coding	Hapln1	intron	ENSMUSG00000021613	ProperStrand	2	chr16	23110758	23110794	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-12.5418
chr18	5520860	5520940	processed_transcript	RP23-278M16.2	.	ENSMUSG00000093709	ProperStrand	2	chr18	5520524	5520614	protein_coding	Gm10125	utr3	ENSMUSG00000063087	ProperStrand	1	1	-inf
chr11	6528105	6528164	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr6	83934979	83934996	protein_coding	Zfml	intron	ENSMUSG00000030016	ProperStrand	3	1	-12.0535
chr9	123462087	123462121	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr1	74161021	74161039	protein_coding	Tns1	intron	ENSMUSG00000055322	NonProperStrand	8	1	-4.9965
chr11	109011748	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	35162560	35162697	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	5	-3.3075
chr12	87437681	87437805	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr13	49684398	49684433	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-7.1948
chr10	68098456	68098512	LTR	MLT1D	MaLR	chr10MLT1D68098441	NonProperStrand	1	chr17	39847977	39848032	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr17	39847870	39847889	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	35854496	35854512	SINE	B2_Mm2	B2	chr17B2_Mm235854432	ProperStrand	2	1	-6.4812
chr11	109011793	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	85090064	85090083	protein_coding	Sh3gl2	intron	ENSMUSG00000028488	ProperStrand	3	1	-6.2761
chr4	120892185	120892204	SINE	ID_B1	B4	chr4ID_B1120892175	ProperStrand	2	chr9	123461959	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr4	132309475	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr13	44869577	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	13	-9.3503
chr3	123507936	123507959	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr17	44968152	44968169	protein_coding	Supt3h	intron	ENSMUSG00000038954	ProperStrand	2	1	-9.9469
chr4	132352442	132352866	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr4	132352887	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	8	-18.5583
chr17	39847990	39848006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	134595079	134595100	processed_transcript	B130055M24Rik	.	ENSMUSG00000086502	ProperStrand	1	1	-inf
chr3	132807380	132807460	protein_coding	D630013G24Rik	intron	ENSMUSG00000040969	ProperStrand	5	chr15	90454272	90454362	protein_coding	Cpne8	intron	ENSMUSG00000052560	NonProperStrand	2	1	-19.4797
chr17	39847292	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chrX	163957575	163957653	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	10	1	-4.9250
chr15	85759958	85759977	protein_coding	Celsr1	intron	ENSMUSG00000016028	ProperStrand	3	chr16	35981624	35981643	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-12.3061
chr4	43199483	43199573	protein_coding	Unc13b	intron	ENSMUSG00000028456	ProperStrand	4	chr10	67010925	67011005	protein_coding	Ado	exon	ENSMUSG00000057134	NonProperStrand	2	2	-inf
chr4	132352891	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr19	8888596	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	3	-4.8691
chr8	17970025	17970115	LINE	L1Md_F3	L1	chr8L1Md_F317970007	NonProperStrand	1	chr16	98063543	98063623	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	4	1	-inf
chr18	38297170	38297186	LINE	L1_Mus3	L1	chr18L1_Mus338296627	ProperStrand	1	chr17	39847682	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr13	99907689	99907769	LTR	IAPLTR1a_Mm	ERVK	chr13IAPLTR1a_Mm99907567	NonProperStrand	1	chr13	99907908	99907998	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n99907906	ProperStrand	1	1	-inf
chr17	39847738	39847759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	136097123	136097373	protein_coding	Adora1	utr3	ENSMUSG00000042429	ProperStrand	1	1	-inf
chr9	62377825	62377844	protein_coding	Coro2b	intron	ENSMUSG00000041729	NonProperStrand	5	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-8.6536
chr17	39847325	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	93221339	93221357	protein_coding	Espnl	intron	ENSMUSG00000049515	ProperStrand	2	1	-8.6616
chr1	156840520	156840610	LTR	MT2A	ERVL	chr1MT2A156840443	ProperStrand	1	chr1	156840352	156840432	Simple_repeat	(TGG)n	Simple_repeat	chr1(TGG)n156840324	ProperStrand	1	1	-inf
chr1	118935397	118935487	LINE	L1_Mus2	L1	chr1L1_Mus2118935097	ProperStrand	1	chr1	118935511	118935591	LINE	Lx	L1	chr1Lx118935486	ProperStrand	1	1	-inf
chr8	113892415	113892433	protein_coding	Fa2h	intron	ENSMUSG00000033579	ProperStrand	1	chr10	108050081	108050099	protein_coding	Syt1	intron	ENSMUSG00000035864	ProperStrand	5	1	-inf
chr6	82323524	82323614	LTR	MERVL_2A-int	ERVL	chr6MERVL_2A-int82322619	NonProperStrand	1	chr6	82323818	82323898	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n82323824	NonProperStrand	1	1	-inf
chr14	75847957	75847979	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr5	3692018	3692035	protein_coding	Ankib1	utr3	ENSMUSG00000040351	ProperStrand	2	1	-13.0444
chr1	122357191	122357235	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr17	35854496	35854512	SINE	B2_Mm2	B2	chr17B2_Mm235854432	ProperStrand	2	1	-12.8468
chr12	99645568	99645660	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr9	59679194	59679238	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	13	1	-10.6448
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-8.4059
chr11	97934220	97934300	LTR	RLTR27	ERVK	chr11RLTR2797934082	ProperStrand	1	chr11	97934627	97934717	SINE	B2_Mm2	B2	chr11B2_Mm297934575	ProperStrand	1	1	-inf
chr1	189234496	189234514	LINE	L1M2	L1	chr1L1M2189234354	NonProperStrand	1	chr5	114852005	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-inf
chr6	10873046	10873136	LTR	RLTR6-int	ERV1	chr6RLTR6-int10870634	ProperStrand	1	chr12	67663028	67663108	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr11	109011647	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	132352441	132352833	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	17	-9.5526
chr8	105412003	105412094	LINE	L1Md_T	L1	chr8L1Md_T105411316	ProperStrand	2	chr15	79109423	79114694	protein_coding	Baiap2l2	intron	ENSMUSG00000018126	NonProperStrand	1	1	-inf
chr10	23785361	23785431	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr19	38724730	38724747	protein_coding	Plce1	intron	ENSMUSG00000024998	ProperStrand	2	1	-10.3808
chr2	22744887	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr9	120130458	120130503	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-5.0394
chr11	116491131	116491149	LTR	MTE2b	MaLR	chr11MTE2b116490874	NonProperStrand	1	chr13	46767558	46767658	protein_coding	C78339	intron	ENSMUSG00000069237	NonProperStrand	10	1	-inf
chr5	136032477	136032557	SINE	B4A	B4	chr5B4A136032409	ProperStrand	1	chr5	136032602	136032692	SINE	ID_B1	B4	chr5ID_B1136032627	ProperStrand	1	1	-inf
chr11	109011748	109011830	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	29446463	29446574	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	2	-4.0563
chr7	18652629	18654752	protein_coding	Ceacam12	exon	ENSMUSG00000030366	ProperStrand	1	chr17	24719777	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-inf
chr9	123461823	123461842	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr2	97003089	97003107	protein_coding	Lrrc4c	intron	ENSMUSG00000050587	NonProperStrand	9	1	-4.7558
chr11	109011747	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	104636716	104636733	protein_coding	Ints4	intron	ENSMUSG00000025133	NonProperStrand	2	1	-7.3577
chr2	130276282	130276314	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr1	131573998	131574034	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-3.9442
chrX	4899368	4899405	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr8	87874982	87875001	protein_coding	Mylk3	intron	ENSMUSG00000031698	NonProperStrand	2	1	-16.3142
chr5	125133118	125133137	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	9	chr1	131573840	131573870	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-10.6611
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr9	64811582	64811603	protein_coding	2010321M09Rik	intron	ENSMUSG00000034263	ProperStrand	1	1	-inf
chr10	9839835	9839897	LINE	Lx7	L1	chr10Lx79838334	ProperStrand	1	chr9	123462030	123462120	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	chr17	30025566	30025586	protein_coding	Mdga1	utr5	ENSMUSG00000043557	NonProperStrand	5	1	-14.4057
chr4	127328860	127328950	DNA	Charlie7	MER1_type	chr4Charlie7127328878	ProperStrand	1	chr4	127328569	127328649	LTR	MTC	MaLR	chr4MTC127328441	ProperStrand	1	1	-inf
chr2	173132328	173132344	SINE	ID_B1	B4	chr2ID_B1173132292	ProperStrand	1	chr3	31106989	31107131	protein_coding	Slc7a14	utr3	ENSMUSG00000069072	ProperStrand	5	1	-inf
chr11	109011816	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	23285226	23285243	protein_coding	Wdr44	intron	ENSMUSG00000036769	ProperStrand	1	1	-inf
chr5	100790277	100790367	DNA	URR1A	MER1_type	chr5URR1A100790178	NonProperStrand	1	chr5	100790481	100790561	SINE	RSINE1	B4	chr5RSINE1100790456	NonProperStrand	1	1	-inf
chr4	43492818	43492846	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr10	88429519	88429535	protein_coding	Ano4	intron	ENSMUSG00000035189	NonProperStrand	5	1	-12.9402
chr2	32963383	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr7	27167297	27167313	protein_coding	Nlrp9c	exon	ENSMUSG00000040614	ProperStrand	2	1	-11.2136
chr2	130316322	130316413	protein_coding	Ptpra	intron	ENSMUSG00000027303	NonProperStrand	4	chr2	130333523	130333603	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	2	-15.7472
chr15	61033109	61033200	LINE	L1Md_F	L1	chr15L1Md_F61029917	NonProperStrand	1	chr9	19657760	19657840	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	1	-inf
chr18	7856947	7857027	LTR	MTD	MaLR	chr18MTD7856860	ProperStrand	1	chr18	7856711	7856801	SINE	B1_Mur2	Alu	chr18B1_Mur27856709	ProperStrand	1	1	-inf
chr6	54150809	54150826	protein_coding	Chn2	intron	ENSMUSG00000004633	NonProperStrand	5	chr8	84608896	84609024	protein_coding	Inpp4b	intron	ENSMUSG00000037940	NonProperStrand	7	1	-16.5030
chrX	68593628	68593718	LINE	L1_Mus1	L1	chrXL1_Mus168593057	NonProperStrand	1	chr6	33309615	33309695	protein_coding	Exoc4	intron	ENSMUSG00000029763	NonProperStrand	13	1	-inf
chr8	45796199	45796279	LINE	L1Md_F2	L1	chr8L1Md_F245796187	ProperStrand	1	chr8	45901371	45901461	LINE	Lx5	L1	chr8Lx545901254	NonProperStrand	1	1	-inf
chr13	66422534	66422614	LTR	LTRIS4	ERV1	chr13LTRIS466422446	ProperStrand	1	chr13	65524477	65524567	lincRNA	Gm7782	intron	ENSMUSG00000090514	ProperStrand	1	1	-inf
chr16	23110382	23110434	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr12	107315403	107315426	protein_coding	Vrk1	utr3	ENSMUSG00000021115	NonProperStrand	5	1	-6.7063
chr17	39847182	39847206	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr19	47267805	47267905	protein_coding	Neurl1a	intron	ENSMUSG00000006435	NonProperStrand	4	1	-6.8874
chr17	39847621	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	131843575	131843591	protein_coding	Taf12	intron	ENSMUSG00000028899	NonProperStrand	2	1	-6.4812
chr5	137524963	137525005	LTR	RMER17C	ERVK	chr5RMER17C137524671	NonProperStrand	2	chr5	137525335	137525495	SINE	B3	B2	chr5B3137525388	ProperStrand	2	2	-inf
chr7	112017592	112017672	LTR	ORR1A2-int	MaLR	chr7ORR1A2-int112016806	ProperStrand	1	chr7	112017767	112017857	LTR	ORR1A2	MaLR	chr7ORR1A2112017725	ProperStrand	1	1	-inf
chr7	141448741	141451070	LTR	MT2A	ERVL	chr7MT2A141450628	NonProperStrand	3	chr3	129935745	129935765	protein_coding	Col25a1	intron	ENSMUSG00000058897	NonProperStrand	4	1	-18.9366
chr17	52668139	52668219	LTR	MT2B	ERVL	chr17MT2B52667857	NonProperStrand	1	chr17	52668548	52668638	SINE	B3A	B2	chr17B3A52668536	NonProperStrand	1	1	-inf
chr2	130276234	130276357	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr16	23110835	23110932	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	8	-4.8144
chr2	61585832	61585922	protein_coding	Psmd14	intron	ENSMUSG00000026914	ProperStrand	2	chr2	62656437	62656517	protein_coding	Kcnh7	intron	ENSMUSG00000059742	ProperStrand	5	1	-19.5000
chr17	39848106	39848165	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr2	156128461	156128554	protein_coding	Phf20	intron	ENSMUSG00000038116	NonProperStrand	2	1	-10.7569
chr1	155981117	155981197	LINE	L1Md_F2	L1	chr1L1Md_F2155979083	ProperStrand	1	chr12	67667770	67667860	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr11	78079704	78079784	protein_coding-noncoding	2610507B11Rik	utr5	ENSMUSG00000010277	NonProperStrand	1	chr11	78079331	78079421	protein_coding	2610507B11Rik	intron	ENSMUSG00000010277	NonProperStrand	1	1	-inf
chr13	6874645	6874725	LINE	Lx5	L1	chr13Lx56870633	NonProperStrand	1	chr13	6874781	6874871	SINE	PB1D9	Alu	chr13PB1D96874754	ProperStrand	1	1	-inf
chr11	85675439	85675519	DNA	MER2B	MER2_type	chr11MER2B85675377	ProperStrand	1	chr2	52781903	52781992	protein_coding	Fmnl2	intron	ENSMUSG00000036053	NonProperStrand	8	1	-inf
chr10	23785352	23785397	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chrX	101292665	101292691	protein_coding	C77370	intron	ENSMUSG00000046449	NonProperStrand	2	1	-10.3808
chr13	95330598	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr13	97190552	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	2	-3.2509
chr17	39846433	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr19	5796611	5797528	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	18	2	-4.1520
chr6	133675517	133675597	LTR	MTC	MaLR	chr6MTC133675533	NonProperStrand	1	chr12	67667768	67667858	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr15	86514557	86514637	LINE	L1Md_F2	L1	chr15L1Md_F286514563	ProperStrand	1	chr15	86320735	86320825	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-inf
chr17	31027734	31027824	LTR	MLT1B	MaLR	chr17MLT1B31027659	NonProperStrand	1	chr17	31028052	31028132	Low_complexity	CT-rich	Low_complexity	chr17CT-rich31027984	NonProperStrand	1	1	-inf
chr1	93750450	93750468	LINE	L1MD1	L1	chr1L1MD193749946	ProperStrand	2	chr7	109520132	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-10.7680
chr18	33795173	33795245	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr5	146261118	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	2	-7.2643
chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	chr5	121205022	121205056	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-7.0326
chr11	90479917	90480007	protein_coding	Stxbp4	intron	ENSMUSG00000020546	ProperStrand	2	chr9	70399760	70399840	protein_coding	Sltm	intron	ENSMUSG00000032212	ProperStrand	1	1	-inf
mmu-miR-3473b	0	17	miRNA	mmu-miR-3473b	.	mmu-miR-3473b	ProperStrand	8	chr18	35557030	35557105	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-8.7316
chr3	69085285	69085327	SINE	RSINE1	B4	chr3RSINE169085236	ProperStrand	4	chr13	95330663	95330737	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	1	-11.4546
chr8	107383498	107383588	LINE	L1Md_T	L1	chr8L1Md_T107381590	ProperStrand	1	chr8	107383918	107383998	SINE	B2_Mm1a	B2	chr8B2_Mm1a107383901	ProperStrand	1	1	-inf
chr3	96176438	96176487	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr2	5379277	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.7608
chr5	62121834	62121852	LINE	L1_Mur3	L1	chr5L1_Mur362121770	NonProperStrand	3	chr16	35981617	35981646	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-12.3061
chr18	67224259	67224275	LTR	RMER10A	ERVL	chr18RMER10A67223908	ProperStrand	1	chr9	15313801	15313863	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr8	14334815	14334834	protein_coding	Dlgap2	intron	ENSMUSG00000047495	NonProperStrand	9	1	-5.4552
chr2	131491974	131491991	antisense	Gm14280	.	ENSMUSG00000086831	NonProperStrand	1	chr1	63178712	63178747	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	1	-inf
chr11	69667861	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr4	132309515	132310364	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	9	-7.8479
chr11	109011748	109011780	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	47855259	47857863	protein_coding	Wdr96	intron	ENSMUSG00000044948	NonProperStrand	4	1	-5.5999
chr4	21870397	21871446	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	NonProperStrand	4	chr8	13876111	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-12.0010
chr13	44869580	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr19	8888543	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	5	-3.6156
chr6	38606205	38606286	LTR	MTEa	MaLR	chr6MTEa38606193	ProperStrand	1	chr4	34678126	34678216	SINE	B1_Mur1	Alu	chr4B1_Mur134678090	NonProperStrand	1	1	-inf
chr5	146261275	146261336	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr17	31437145	31437245	protein_coding	Slc37a1	utr5	ENSMUSG00000024036	ProperStrand	1	1	-inf
chr2	7946122	7946212	LINE	L1_Mus1	L1	chr2L1_Mus17945927	ProperStrand	1	chr2	7946546	7946626	LINE	L1_Mus1	L1	chr2L1_Mus17946306	NonProperStrand	1	1	-inf
chr17	39846766	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	26639300	26639321	Simple_repeat	(GA)n	Simple_repeat	chr2(GA)n26639301	NonProperStrand	3	1	-5.9338
chr4	139196799	139196879	protein_coding-noncoding	Aldh4a1	utr5	ENSMUSG00000028737	NonProperStrand	1	chr4	139196475	139196565	protein_coding	Aldh4a1	intron	ENSMUSG00000028737	NonProperStrand	2	1	-inf
chr11	109011794	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	125133118	125133137	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	9	1	-3.8922
chr5	146261304	146261333	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr8	13876096	13876174	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-5.1292
chr14	79860870	79860950	protein_coding	Wbp4	utr3	ENSMUSG00000022023	ProperStrand	7	chr2	24193340	24193430	protein_coding	Il1rn	intron	ENSMUSG00000026981	ProperStrand	1	1	-inf
chr18	10052132	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr14	77874034	77874052	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	10	1	-11.0606
chr2	5379282	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr11	119080663	119080679	protein_coding	Tbc1d16	intron	ENSMUSG00000039976	NonProperStrand	2	1	-9.4768
chr17	39846777	39846838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	131013657	131018637	protein_coding-noncoding	Cdc25b	utr5	ENSMUSG00000027330	ProperStrand	1	1	-inf
chr15	74562320	74562338	protein_coding	Lypd2	intron	ENSMUSG00000022595	ProperStrand	1	chr4	141465620	141465636	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	6	1	-inf
chr9	65365388	65365478	SINE	B3	B2	chr9B365365410	ProperStrand	1	chr9	65357777	65357857	protein_coding	Ankdd1a	intron	ENSMUSG00000066510	NonProperStrand	2	1	-inf
chr6	56919552	56919642	LINE	L1_Rod	L1	chr6L1_Rod56919577	NonProperStrand	1	chr6	56919118	56919198	LINE	Lx3A	L1	chr6Lx3A56918452	ProperStrand	2	1	-inf
chr17	39847046	39847079	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	1	-3.5690
chr7	67650791	67650871	LINE	L1_Mm	L1	chr7L1_Mm67650221	ProperStrand	1	chr7	67651054	67651144	LINE	L1_Mus1	L1	chr7L1_Mus167650867	ProperStrand	1	1	-inf
chr9	101158088	101158178	LTR	RLTR42-int	ERVK	chr9RLTR42-int101157974	NonProperStrand	1	chr9	101158275	101158355	SINE	B1_Mm	Alu	chr9B1_Mm101158273	NonProperStrand	1	1	-inf
chr3	123507995	123508023	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr14	33392952	33392968	protein_coding	Ercc6	utr3	ENSMUSG00000054051	ProperStrand	1	1	-inf
chr1	75369567	75369584	antisense	Gm15179	.	ENSMUSG00000085653	NonProperStrand	2	chr4	132309465	132309544	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-9.7441
chr13	97190549	97190620	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr3	88693992	88694060	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	8	1	-6.6028
chr5	121205008	121205090	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr15	86194873	86194908	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-5.2220
chr17	39846456	39847150	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	97190540	97190629	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	28	-5.7452
chr11	94693358	94693438	SINE	B1_Mur1	Alu	chr11B1_Mur194693359	ProperStrand	1	chr11	94693515	94693605	SINE	B1_Mur4	Alu	chr11B1_Mur494693518	ProperStrand	1	1	-inf
chr17	35162602	35162655	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr9	110281348	110281368	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-5.4083
chr1	63179033	63179080	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	chr2	5379317	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-4.0652
chr6	137174156	137174246	SINE	B1F	Alu	chr6B1F137174137	NonProperStrand	1	chr6	137174456	137174536	SINE	B3	B2	chr6B3137174462	ProperStrand	1	1	-inf
chr10	58522463	58522543	protein_coding	Sh3rf3	intron	ENSMUSG00000037990	ProperStrand	5	chr10	61339605	61339695	protein_coding	Col13a1	intron	ENSMUSG00000058806	ProperStrand	7	1	-16.5030
chr6	36335523	36335539	lincRNA	9330158H04Rik	intron	ENSMUSG00000073154	NonProperStrand	3	chr18	77525467	77525557	protein_coding	Loxhd1	intron	ENSMUSG00000032818	ProperStrand	7	1	-17.7120
chr11	109011791	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	83773367	83773384	protein_coding	D930015E06Rik	intron	ENSMUSG00000033767	ProperStrand	7	1	-4.3977
chr7	110046466	110046489	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr16	23110755	23110801	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-4.3984
chr1	63179114	63179135	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	chr2	90395157	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-3.5774
chr10	81181272	81181321	SINE	B1_Mur2	Alu	chr10B1_Mur281181201	NonProperStrand	1	chr2	90395146	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr6	28426117	28426143	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	8	chr13	97190553	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-6.6028
chr2	69017412	69017492	protein_coding-noncoding	Nostrin	utr5	ENSMUSG00000034738	ProperStrand	1	chr2	69017583	69017673	protein_coding	Nostrin	intron	ENSMUSG00000034738	ProperStrand	1	1	-inf
chr5	53213186	53213203	protein_coding	Zcchc4	utr3	ENSMUSG00000029179	NonProperStrand	7	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.2192
chr8	3803237	3803337	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	chr16	23110821	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-5.2564
chr13	112578192	112578292	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr8	95746116	95746177	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-3.1543
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr8	13876097	13876124	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-8.1857
chr1	190751685	190751765	protein_coding	Ush2a	intron	ENSMUSG00000026609	ProperStrand	7	chr1	192733091	192733181	protein_coding	Rps6kc1	intron	ENSMUSG00000089872	NonProperStrand	4	1	-17.0104
chr11	94941570	94941763	LTR	LTR52	ERVL	chr11LTR5294941457	ProperStrand	1	mmu-miR-5100	4	20	miRNA	mmu-miR-5100	.	mmu-miR-5100	ProperStrand	1	1	-inf
chr17	39846664	39846710	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr1	129678232	129758447	protein_coding	Ccnt2	intron	ENSMUSG00000026349	NonProperStrand	2	1	-12.9931
chr11	109012017	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr6	115808031	115808102	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	2	-7.7051
chr2	174920928	174921018	LINE	L1Md_F	L1	chr2L1Md_F174919978	NonProperStrand	1	chr2	174921334	174921414	LINE	L1VL1	L1	chr2L1VL1174921070	NonProperStrand	1	1	-inf
chr9	120130421	120130501	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr7	127527913	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-6.8691
chr6	3201474	3201562	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	mmu-miR-3473b	0	17	miRNA	mmu-miR-3473b	.	mmu-miR-3473b	ProperStrand	8	1	-9.9955
chr19	8888639	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	chr16	23110475	23110505	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-4.3465
chr17	39847440	39847530	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	33383904	33383984	protein_coding	Zfp148	intron	ENSMUSG00000022811	ProperStrand	1	1	-inf
chr3	96176366	96176388	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr2	32963282	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-5.4135
chr13	95330597	95330679	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr5	30814793	30814810	protein_coding	Cib4	intron	ENSMUSG00000053194	ProperStrand	1	1	-inf
chr17	66244503	66244593	LTR	MurERV4-int	ERVK	chr17MurERV4-int66244338	NonProperStrand	1	chr17	66244203	66244283	SINE	B2_Mm1t	B2	chr17B2_Mm1t66244151	NonProperStrand	1	1	-inf
chr9	55238622	55238640	protein_coding	AI118078	intron	ENSMUSG00000032313	NonProperStrand	3	chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	1	-14.2500
chr11	115472717	115472734	protein_coding	Mif4gd	intron	ENSMUSG00000020743	ProperStrand	2	chr2	130276269	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-11.4177
chr4	72905740	72905830	LINE	L1Md_F2	L1	chr4L1Md_F272904580	ProperStrand	1	chr4	72905869	72905949	LINE	L1_Mm	L1	chr4L1_Mm72905862	NonProperStrand	1	1	-inf
chr17	39846818	39846841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chrX	75115175	75115191	protein_coding	Gm14744	utr3	ENSMUSG00000079522	ProperStrand	1	1	-inf
chr17	24720821	24720902	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr16	23111704	23111756	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	1	-5.3085
chr17	39847220	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr6	49236487	49236582	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	5	1	-6.3853
chr11	86060011	86060091	antisense	4632419I22Rik	.	ENSMUSG00000085208	ProperStrand	2	chr5	103918612	103918702	protein_coding	Ptpn13	intron	ENSMUSG00000034573	NonProperStrand	5	1	-19.5000
chr7	141448876	141448905	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr6	131380326	131380396	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	1	-8.7375
chr5	140888072	140888152	LTR	MT2B	ERVL	chr5MT2B140887918	ProperStrand	1	chr5	140887936	140888026	SINE	B1_Mur1	Alu	chr5B1_Mur1140887888	ProperStrand	1	1	-inf
chr13	95330598	95330688	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr8	95746059	95746099	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-5.9173
chr4	28549789	28549879	LINE	L1Md_T	L1	chr4L1Md_T28545520	NonProperStrand	1	chr4	20092335	20092415	protein_coding	Nkain3	intron	ENSMUSG00000055761	NonProperStrand	6	1	-inf
chr12	11020644	11020724	LINE	L1Md_F	L1	chr12L1Md_F11020552	NonProperStrand	1	chr12	11020432	11020522	SINE	B3	B2	chr12B311020324	NonProperStrand	1	1	-inf
chr12	99645564	99645668	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr17	39846414	39846869	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	7	-10.0304
chr15	9925632	9925653	LINE	L1Md_A	L1	chr15L1Md_A9921481	NonProperStrand	1	chr16	23110910	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr13	62305327	62305417	LINE	L1_Mus3	L1	chr13L1_Mus362305217	NonProperStrand	1	chr13	62305099	62305179	Unknown	MurSatRep1	Unknown	chr13MurSatRep162304662	ProperStrand	1	1	-inf
chr2	60905381	60905461	LINE	L1M4b	L1	chr2L1M4b60904332	NonProperStrand	1	chr2	60905614	60905704	LINE	L1M4b	L1	chr2L1M4b60905544	NonProperStrand	1	1	-inf
chr17	39847511	39847530	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	22622316	22622336	protein_coding	Dgkg	utr5	ENSMUSG00000022861	NonProperStrand	3	1	-5.4090
chrX	58774571	58774661	LINE	Lx2B	L1	chrXLx2B58774417	ProperStrand	1	chrX	58775188	58775268	LINE	Lx2B	L1	chrXLx2B58774640	NonProperStrand	1	1	-inf
chrX	96488982	96489072	LINE	L2a	L2	chrXL2a96488958	ProperStrand	1	chrX	96489246	96489326	LTR	MTEb	MaLR	chrXMTEb96489254	ProperStrand	1	1	-inf
chr16	18240716	18240796	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr8	126944846	126944936	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-6.7485
chr7	86462247	86462267	protein_coding	Abhd2	intron	ENSMUSG00000039202	ProperStrand	1	chr5	66440213	66440305	protein_coding	Rbm47	intron	ENSMUSG00000070780	NonProperStrand	9	1	-inf
chr11	115806741	115806844	protein_coding	Sap30bp	intron	ENSMUSG00000020755	NonProperStrand	2	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-9.9953
chr9	120130415	120130460	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr8	126944849	126944939	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-3.2273
chr11	70100894	70100974	LINE	HAL1	L1	chr11HAL170100792	NonProperStrand	1	chr11	70100671	70100761	SINE	B1F2	Alu	chr11B1F270100662	NonProperStrand	1	1	-inf
chr13	13472801	13472827	protein_coding	Gpr137b	intron	ENSMUSG00000021306	NonProperStrand	2	chr13	44869574	44869650	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chrX	150343686	150343776	LTR	ORR1A2-int	MaLR	chrXORR1A2-int150343686	ProperStrand	1	chrX	150343427	150343507	LTR	ORR1A2	MaLR	chrXORR1A2150343375	ProperStrand	1	1	-inf
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	108087099	108087118	protein_coding	Prkca	intron	ENSMUSG00000050965	ProperStrand	6	1	-4.7173
chr5	146261267	146261318	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr19	8888538	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	3	-6.6226
chr4	132352895	132352970	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr7	28386521	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	1	-8.1360
chr10	80263024	80263104	protein_coding	Sf3a2	intron	ENSMUSG00000020211	NonProperStrand	1	chr12	38119606	38119696	protein_coding	Agmo	intron	ENSMUSG00000050103	ProperStrand	4	1	-inf
chr17	39847438	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	10052131	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	4	-3.3225
chrX	76132189	76132269	LINE	L1Md_F2	L1	chrXL1Md_F276130733	ProperStrand	1	chrX	56339882	56339972	protein_coding	Fgf13	intron	ENSMUSG00000031137	NonProperStrand	4	1	-inf
chr11	88828345	88828435	LTR	RMER6B	ERVK	chr11RMER6B88828114	NonProperStrand	1	chr11	88827842	88827922	protein_coding	Gm15698	intron	ENSMUSG00000057534	NonProperStrand	1	1	-inf
chr8	124306383	124306473	protein_coding-noncoding	Jph3	utr5	ENSMUSG00000025318	ProperStrand	1	chr8	124305976	124306056	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	3	1	-inf
chr5	101083408	101083498	LINE	L2a	L2	chr5L2a101083366	NonProperStrand	2	chr5	101083228	101083308	SINE	B3	B2	chr5B3101083130	ProperStrand	2	2	-inf
chr17	39846747	39846775	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr15	103241552	103241952	protein_coding	Gtsf1	intron	ENSMUSG00000022487	NonProperStrand	2	1	-7.0123
chr16	23111300	23111372	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr3	62159318	62159347	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	1	-4.3030
chr4	146946447	146946537	protein_coding	Gm13154	intron	ENSMUSG00000065999	NonProperStrand	1	chr4	146071763	146071843	protein_coding	Gm13051	intron	ENSMUSG00000066009	NonProperStrand	1	1	-inf
chr2	36549844	36549934	LTR	RLTR10B2	ERVK	chr2RLTR10B236549710	ProperStrand	1	chr2	36550196	36550276	LTR	RMER17D2	ERVK	chr2RMER17D236550035	NonProperStrand	1	1	-inf
chr2	78813966	78814046	LINE	L1Md_F2	L1	chr2L1Md_F278813658	ProperStrand	1	chr2	78814259	78814349	LINE	Lx8	L1	chr2Lx878814048	NonProperStrand	1	1	-inf
chr1	122357184	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr17	35162561	35162697	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	2	-7.4927
chr14	16530006	16530022	DNA	URR1A	MER1_type	chr14URR1A16529898	ProperStrand	2	chr19	8888628	8888675	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr10	107494531	107494621	LINE	L1Md_F2	L1	chr10L1Md_F2107489103	ProperStrand	1	chr10	107494787	107494867	LINE	L1Md_F2	L1	chr10L1Md_F2107494759	ProperStrand	1	1	-inf
chr17	39846750	39846827	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr19	8682527	8682543	protein_coding	Slc22a8	intron	ENSMUSG00000063796	ProperStrand	2	1	-7.0123
chr17	39846921	39846984	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	50178063	50178082	protein_coding	Slc7a11	intron	ENSMUSG00000027737	ProperStrand	3	1	-5.9338
chr11	6528100	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr12	70937904	70937920	protein_coding	Map4k5	intron	ENSMUSG00000034761	NonProperStrand	4	1	-11.3612
chr11	109011794	109011820	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	128535445	128535464	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	10	1	-3.6858
chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	chr19	8888597	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	2	-5.0528
chr15	8779555	8779645	DNA	Charlie2b	MER1_type	chr15Charlie2b8779353	NonProperStrand	1	chr15	8779667	8779747	Simple_repeat	(TA)n	Simple_repeat	chr15(TA)n8779681	NonProperStrand	1	1	-inf
chr14	79143955	79144035	LTR	MTC	MaLR	chr14MTC79143967	ProperStrand	1	chr14	79143667	79143757	Simple_repeat	(TTTCC)n	Simple_repeat	chr14(TTTCC)n79143687	NonProperStrand	1	1	-inf
chr4	132352895	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr5	135783470	135784213	protein_coding	Fkbp6	intron	ENSMUSG00000040013	NonProperStrand	2	1	-12.1295
chr6	35778354	35778444	LINE	Lx5	L1	chr6Lx535778312	NonProperStrand	2	chr6	35778230	35778310	Low_complexity	CT-rich	Low_complexity	chr6CT-rich35778188	ProperStrand	2	2	-inf
chr5	79589249	79589339	LINE	Lx9	L1	chr5Lx979589094	ProperStrand	1	chr5	79589568	79589648	LINE	Lx9	L1	chr5Lx979589543	NonProperStrand	1	1	-inf
chr6	3201495	3201571	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	20	chr7	79740335	79740402	LTR	ORR1C1-int	MaLR	chr7ORR1C1-int79740137	NonProperStrand	1	1	-inf
chr10	108651345	108651425	LINE	L1Md_T	L1	chr10L1Md_T108649597	NonProperStrand	1	chr10	104692041	104692131	protein_coding	Tmtc2	intron	ENSMUSG00000036019	ProperStrand	5	1	-inf
chr3	56183307	56183325	LINE	L1Md_A	L1	chr3L1Md_A56183116	ProperStrand	5	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.9532
chr17	39846321	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	70963671	70963843	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	5	-6.6241
chr9	123462142	123462161	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr15	91888156	91888172	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	7	1	-5.2735
chr17	39847427	39847991	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	131573835	131574034	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	6	-4.3897
chrX	96042964	96043044	protein_coding	Ophn1	intron	ENSMUSG00000031214	ProperStrand	4	chrX	98641771	98641861	protein_coding	Nono	intron	ENSMUSG00000031311	NonProperStrand	1	1	-inf
chrX	159733193	159733283	LTR	MLT1A0	MaLR	chrXMLT1A0159733164	ProperStrand	1	chrX	159733402	159733482	LTR	RLTR40	ERVK	chrXRLTR40159733387	ProperStrand	1	1	-inf
chr8	12757419	12765573	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	chr13	97190552	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	2	-5.9317
chr17	70963745	70963852	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr18	35557034	35557082	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-5.4069
chr8	88819954	88819971	LINE	L1Md_F2	L1	chr8L1Md_F288816497	NonProperStrand	2	chr2	130276253	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-11.4177
chr16	23589136	23589226	DNA	RCHARR1	MER1_type	chr16RCHARR123589056	ProperStrand	1	chr16	23588714	23588794	LTR	MTD	MaLR	chr16MTD23588666	NonProperStrand	1	1	-inf
chr16	23111617	23111702	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr16	23111703	23111756	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	1	-3.3801
chr19	53957159	53957249	DNA	Cheshire	MER1_type	chr19Cheshire53957181	NonProperStrand	1	chr19	53957294	53957374	SINE	B1_Mus2	Alu	chr19B1_Mus253957310	NonProperStrand	1	1	-inf
chr7	144614951	144615031	LTR	RMER16	ERVK	chr7RMER16144614940	NonProperStrand	1	chr7	144614782	144614872	SINE	B1_Mus2	Alu	chr7B1_Mus2144614715	ProperStrand	1	1	-inf
chr4	148006734	148006846	LTR	RLTR18B	ERVK	chr4RLTR18B148006522	NonProperStrand	1	chr11	69669735	69669777	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-inf
chr6	111926934	111927014	LTR	MYSERV6-int	ERVK	chr6MYSERV6-int111926855	ProperStrand	1	chr6	111926751	111926841	LTR	RLTR15	ERVK	chr6RLTR15111926516	ProperStrand	1	1	-inf
chr5	63990176	63990256	LTR	MLT1A0	MaLR	chr5MLT1A063990108	ProperStrand	1	chr5	63989990	63990080	LTR	MLT1I	MaLR	chr5MLT1I63989775	NonProperStrand	1	1	-inf
chr16	28304752	28304769	protein_coding	Fgf12	intron	ENSMUSG00000022523	NonProperStrand	2	chr9	123461932	123461951	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chrX	38590595	38590685	LINE	L1Md_T	L1	chrXL1Md_T38584925	NonProperStrand	1	chrX	38590806	38590886	LINE	L1Md_T	L1	chrXL1Md_T38590685	NonProperStrand	1	1	-inf
chr14	90551661	90551751	LINE	L1_Mus2	L1	chr14L1_Mus290551634	ProperStrand	1	chr14	90551549	90551629	LINE	L1_Mus4	L1	chr14L1_Mus490551434	NonProperStrand	1	1	-inf
chr2	90395144	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr16	19883801	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	6	-8.2410
chr2	100338164	100338254	LINE	L1Md_A	L1	chr2L1Md_A100337952	ProperStrand	1	chr2	100337711	100337791	LINE	Lx7	L1	chr2Lx7100337130	NonProperStrand	1	1	-inf
chr19	60873916	60874006	LINE	L2a	L2	chr19L2a60873743	NonProperStrand	1	chr19	60874187	60874267	LINE	L2a	L2	chr19L2a60874108	NonProperStrand	1	1	-inf
chr17	39846660	39847127	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	113901596	113901614	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	4	-4.7032
chr17	39844617	39844731	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	159	chr17	39845448	39845580	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	201	3	-7.1527
chr17	39848094	39848149	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr12	58761969	58761985	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	1	-6.4339
chr8	44629132	44629212	LINE	Lx7	L1	chr8Lx744628535	NonProperStrand	1	chr8	44629464	44629554	SINE	B1_Mus1	Alu	chr8B1_Mus144629396	NonProperStrand	1	1	-inf
chr17	35162563	35162646	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr16	35981617	35981638	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-5.0343
chr9	123461931	123461995	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr4	109000967	109001067	protein_coding	Eps15	intron	ENSMUSG00000028552	NonProperStrand	2	1	-15.9877
chr2	29224829	29224848	protein_coding	Med27	intron	ENSMUSG00000026799	ProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr5	90775317	90775335	protein_coding	Ankrd17	intron	ENSMUSG00000055204	NonProperStrand	1	chr14	23463202	23494546	protein_coding	1700112E06Rik	intron	ENSMUSG00000063458	ProperStrand	11	1	-inf
chr11	78342373	78342463	protein_coding	Tnfaip1	intron	ENSMUSG00000017615	ProperStrand	1	chr5	120637107	120637187	protein_coding	Rbm19	intron	ENSMUSG00000029594	ProperStrand	4	1	-inf
chr2	155596101	155596191	LINE	L2a	L2	chr2L2a155595422	NonProperStrand	1	chr2	155596286	155596366	LINE	L2a	L2	chr2L2a155596292	NonProperStrand	1	1	-inf
chr17	39847635	39847659	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr17	39843708	39843788	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	ProperStrand	12	1	-9.2431
chr8	63062596	63062676	LINE	L1_Mur2	L1	chr8L1_Mur263062531	ProperStrand	1	chr8	63062323	63062413	LTR	RLTR25B	ERVK	chr8RLTR25B63062288	NonProperStrand	1	1	-inf
chr2	121308332	121308348	LINE	Lx2	L1	chr2Lx2121307384	NonProperStrand	5	chr1	74632832	74632848	protein_coding	Zfp142	intron	ENSMUSG00000026135	NonProperStrand	2	1	-19.4797
chr2	168011157	168011180	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	chr5	107905201	107905277	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-8.3380
chr11	6528098	6528164	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr11	51737847	51737905	SINE	B3	B2	chr11B351737669	NonProperStrand	6	1	-10.4468
chr14	112495911	112495934	LINE	L1Md_T	L1	chr14L1Md_T112495662	ProperStrand	4	chr16	11144108	11144198	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-13.1165
chr8	70895758	70895858	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr2	71905980	71906007	protein_coding	Rapgef4	intron	ENSMUSG00000049044	ProperStrand	6	1	-8.4947
chr8	22140716	22140796	LINE	L1VL2	L1	chr8L1VL222140697	NonProperStrand	1	chr10	9476160	9476250	protein_coding	Stxbp5	utr3	ENSMUSG00000019790	ProperStrand	1	1	-inf
chr5	146261277	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr5	114852002	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	2	-4.2549
chr4	33027151	33027231	protein_coding	Ankrd6	intron	ENSMUSG00000040183	ProperStrand	4	chr14	120190578	120190668	protein_coding	Hs6st3	intron	ENSMUSG00000053465	ProperStrand	4	1	-18.2441
chr7	14160746	14160836	LINE	L1_Mur3	L1	chr7L1_Mur314160633	NonProperStrand	1	chr7	14161297	14161377	LTR	RLTR9F	ERVK	chr7RLTR9F14161194	ProperStrand	1	1	-inf
chr1	110233789	110233879	LINE	L1_Mur3	L1	chr1L1_Mur3110233742	ProperStrand	1	chr1	110233609	110233689	LINE	Lx3C	L1	chr1Lx3C110233523	ProperStrand	1	1	-inf
chr11	109011656	109011709	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	19004848	19004864	LINE	L1_Mus2	L1	chr7L1_Mus219002686	ProperStrand	4	1	-5.5999
chr11	6528085	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr14	75972521	75972603	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	1	-8.6513
chr10	80853097	80853127	protein_coding-noncoding	Dohh	utr5	ENSMUSG00000078440	NonProperStrand	1	chr18	35557158	35557177	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-inf
chr17	39847633	39847660	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr8	70070087	70070372	protein_coding	Nat3	intron	ENSMUSG00000056426	ProperStrand	3	2	-9.7222
chr13	59453913	59453929	LINE	L1MA6	L1	chr13L1MA659453653	NonProperStrand	1	chr17	39847511	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr2	90395139	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr13	58394550	58394584	protein_coding	Kif27	exon	ENSMUSG00000060176	ProperStrand	6	1	-6.2750
chr14	18269310	18269980	LTR	ORR1A1-int	MaLR	chr14ORR1A1-int18269338	NonProperStrand	1	chr14	18269139	18269229	LTR	ORR1A1	MaLR	chr14ORR1A118268996	NonProperStrand	1	1	-inf
chr10	23785346	23785391	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr5	74093595	74093652	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	1	-6.4068
chr1	102825805	102825895	LTR	RMER17C	ERVK	chr1RMER17C102825780	ProperStrand	1	chr1	102825587	102825667	SINE	B4A	B4	chr1B4A102825578	ProperStrand	1	1	-inf
chr19	35799695	35799775	DNA	Tigger7	MER2_type	chr19Tigger735799667	NonProperStrand	1	chr19	35799827	35799917	LINE	Lx3C	L1	chr19Lx3C35799846	NonProperStrand	1	1	-inf
chr17	39847659	39847698	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	69687661	69687679	protein_coding	Ikzf2	intron	ENSMUSG00000025997	ProperStrand	2	1	-6.4812
chr17	4082692	4082782	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	chr8	13417126	13417206	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	5	1	-14.1053
chr11	97781654	97781734	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr12	105031129	105031219	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-5.2825
chr13	74808635	74808651	protein_coding	Erap1	intron	ENSMUSG00000021583	NonProperStrand	1	chr13	97190552	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr5	74093616	74093641	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	chr1	163929945	163929962	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	7	1	-14.7985
chr1	179137354	179137372	protein_coding	Akt3	intron	ENSMUSG00000019699	NonProperStrand	8	chr2	32963320	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-7.8960
chr17	39847667	39847688	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	60290495	60290517	protein_coding	Myo15	exon	ENSMUSG00000042678	NonProperStrand	3	1	-5.4090
chr3	123507993	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr7	141984950	141985434	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-4.4273
chr17	39847026	39847151	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	26280181	26280215	protein_coding	Axin1	exon	ENSMUSG00000024182	ProperStrand	2	1	-7.0123
chr17	39846782	39846877	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	119038692	119038712	protein_coding	Tbc1d16	intron	ENSMUSG00000039976	ProperStrand	6	1	-4.3847
chr6	140803566	140803646	LTR	MLT1B	MaLR	chr6MLT1B140803436	NonProperStrand	1	chr6	140803678	140803768	LTR	ORR1B2	MaLR	chr6ORR1B2140803648	NonProperStrand	1	1	-inf
chr11	109011748	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	85177748	85177787	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	4	-7.9394
chr16	23108956	23111376	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	5379271	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	15	-5.2282
chr11	97781694	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr5	47450561	47450578	SINE	PB1D7	Alu	chr5PB1D747450565	NonProperStrand	1	1	-inf
chr13	48805702	48805782	LINE	L1MB4	L1	chr13L1MB448805617	NonProperStrand	1	chr13	48806148	48806238	SINE	B4A	B4	chr13B4A48806174	NonProperStrand	1	1	-inf
chr16	23111317	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr5	115489537	115489604	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	6	1	-6.3083
chr11	106501242	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr16	23110455	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-5.3367
chr14	75847904	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-3.4215
chr11	11175425	11175515	LINE	Lx8	L1	chr11Lx811175324	NonProperStrand	1	chr11	11175674	11175754	LTR	MTEb-int	MaLR	chr11MTEb-int11175552	NonProperStrand	1	1	-inf
chr17	56206876	56206956	protein_coding	Chaf1a	exon	ENSMUSG00000002835	ProperStrand	1	chr17	56207423	56207513	protein_coding	Ubxn6	utr3	ENSMUSG00000019578	NonProperStrand	1	1	-inf
chr3	9428345	9428361	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	9	chr8	126944901	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-8.9272
chr11	97781700	97781742	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr17	56396278	56396337	protein_coding	Fem1a	utr5	ENSMUSG00000043683	ProperStrand	1	1	-inf
chr7	81370311	81370411	SINE	RSINE1	B4	chr7RSINE181370296	NonProperStrand	1	chr9	123462090	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr1	4780274	4780354	LINE	L1M2	L1	chr1L1M24780193	ProperStrand	1	chr1	4780501	4780591	Simple_repeat	(GAA)n	Simple_repeat	chr1(GAA)n4780488	ProperStrand	1	1	-inf
chr16	23110382	23110445	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr10	89620876	89620892	protein_coding	Anks1b	intron	ENSMUSG00000058589	NonProperStrand	23	1	-3.6086
chr10	118100978	118101068	SINE	B3A	B2	chr10B3A118100868	ProperStrand	1	chr10	118100746	118100826	Simple_repeat	(TCTA)n	Simple_repeat	chr10(TCTA)n118100744	ProperStrand	1	1	-inf
chr6	3201509	3201529	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr10	127518106	127518282	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	10	1	-9.5227
chr5	144771333	144771364	protein_coding	Ccz1	intron	ENSMUSG00000029617	NonProperStrand	2	chr1	3215312	3215328	protein_coding	Xkr4	intron	ENSMUSG00000051951	NonProperStrand	5	1	-19.5000
chr11	25606360	25606377	protein_coding	5730522E02Rik	intron	ENSMUSG00000032985	ProperStrand	3	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-16.5606
chr11	87743995	87744058	LTR	RMER19C	ERVK	chr11RMER19C87743816	NonProperStrand	1	chr11	87743531	87743586	SINE	B2_Mm2	B2	chr11B2_Mm287743517	NonProperStrand	1	1	-inf
chr17	39847662	39847752	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	26639304	26639321	Simple_repeat	(GA)n	Simple_repeat	chr2(GA)n26639301	NonProperStrand	3	1	-5.4090
chr5	146261248	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr9	21801733	21801749	protein_coding	Ccdc151	intron	ENSMUSG00000039632	NonProperStrand	2	1	-15.1399
chr17	39847777	39847854	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr18	84839661	84839679	protein_coding	Cndp2	intron	ENSMUSG00000024644	NonProperStrand	2	1	-13.4248
chr5	114852015	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr2	119755641	119755658	protein_coding	Mga	intron	ENSMUSG00000033943	ProperStrand	1	1	-inf
chr12	24511886	24511976	DNA	URR1B	MER1_type	chr12URR1B24511895	ProperStrand	1	chr12	24511658	24511738	LTR	ORR1D2	MaLR	chr12ORR1D224511555	NonProperStrand	1	1	-inf
chr17	39847207	39847258	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	27426670	27426688	LTR	ORR1E	MaLR	chr2ORR1E27426562	ProperStrand	1	1	-inf
chr1	169825147	169825172	Simple_repeat	(CTAGGG)n	Simple_repeat	chr1(CTAGGG)n169825152	NonProperStrand	1	chr9	123461995	123462031	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr5	21375897	21375913	LINE	L1Md_F2	L1	chr5L1Md_F221375138	ProperStrand	1	chr4	132309466	132309544	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr2	5379297	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr17	81838370	81838386	protein_coding	Slc8a1	intron	ENSMUSG00000054640	ProperStrand	5	1	-7.1918
chr1	131573997	131574027	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-6.0138
chr17	39847736	39847879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr4	152300589	152300605	SINE	B1_Mus1	Alu	chr4B1_Mus1152300473	NonProperStrand	1	1	-inf
chrX	87238364	87238410	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr13	97190544	97190614	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	2	-3.5575
chr5	121205007	121205088	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr19	3814996	3815013	protein_coding	Suv420h1	exon	ENSMUSG00000045098	ProperStrand	3	1	-9.9198
chr11	120597643	120597738	LTR	MTB-int	MaLR	chr11MTB-int120597654	ProperStrand	1	chr2	90395158	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chrX	74227629	74227665	LINE	L1_Mm	L1	chrXL1_Mm74227594	ProperStrand	1	chr5	121205023	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-inf
chr15	80082858	80082916	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	ProperStrand	2	chr7	112796915	112797005	protein_coding	Fxc1	intron	ENSMUSG00000089847	NonProperStrand	1	1	-inf
chr6	28818719	28818807	protein_coding	Snd1	intron	ENSMUSG00000001424	NonProperStrand	9	chr14	30031539	30031557	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	ProperStrand	16	1	-13.4797
chr3	132043583	132043606	LTR	IAPLTR2b	ERVK	chr3IAPLTR2b132043279	ProperStrand	1	chr2	91911553	91911570	lincRNA	Gm13780	intron	ENSMUSG00000087197	NonProperStrand	2	1	-inf
chr2	5379273	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr13	97190549	97190620	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	13	-7.6646
chr17	4082212	4082302	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	chr2	90395138	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-3.6609
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr4	132309940	132310029	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-3.1450
chr9	109319971	109320051	LINE	L1Md_T	L1	chr9L1Md_T109319071	NonProperStrand	1	chr3	116471480	116471570	protein_coding	Agl	intron	ENSMUSG00000033400	NonProperStrand	2	1	-inf
chrX	62373093	62373183	LINE	L1_Mur3	L1	chrXL1_Mur362372994	NonProperStrand	1	chrX	62358036	62358116	LTR	RLTR10-int	ERVK	chrXRLTR10-int62357214	ProperStrand	1	1	-inf
chr18	54493145	54493225	LTR	ETnERV2-int	ERVK	chr18ETnERV2-int54486482	NonProperStrand	1	chr18	54493430	54493520	LTR	RLTRETN_Mm	ERVK	chr18RLTRETN_Mm54493312	NonProperStrand	1	1	-inf
chr17	39848446	39848782	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr17	39848200	39848477	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	21	-24.2427
chr9	123462137	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chrX	12687193	12689337	protein_coding	Usp9x	intron	ENSMUSG00000031010	ProperStrand	2	1	-8.2644
chr11	109011795	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	43821657	43821674	LINE	L1Md_A	L1	chr5L1Md_A43817473	ProperStrand	1	1	-inf
chr10	39959643	39959659	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	chr16	23110835	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.1267
chr10	104347173	104347263	DNA	Charlie2a	MER1_type	chr10Charlie2a104347059	ProperStrand	1	chr10	122565920	122566000	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	9	1	-inf
chr17	34950950	34952043	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr16	23110390	23111365	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	3	-5.8946
chr2	5379304	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr1	189126291	189126309	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	4	1	-7.6968
chr14	60256549	60256629	LTR	MTE2a	MaLR	chr14MTE2a60256378	ProperStrand	1	chr14	60256875	60256965	SINE	ID4	ID	chr14ID460256881	ProperStrand	1	1	-inf
chr4	132352896	132352956	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr17	56424225	56424268	protein_coding	Plin3	intron	ENSMUSG00000024197	ProperStrand	3	1	-11.0324
chr6	83120670	83120749	antisense	Gm15624	.	ENSMUSG00000085782	ProperStrand	1	chr6	83978453	83978543	protein_coding	Dysf	intron	ENSMUSG00000033788	ProperStrand	7	1	-inf
chr17	45568375	45568436	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	4	chr2	90395145	90395184	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.1761
chr16	90648997	90649077	LTR	MT2A	ERVL	chr16MT2A90648981	ProperStrand	1	chr16	90648720	90648810	LTR	ORR1E	MaLR	chr16ORR1E90648717	ProperStrand	1	1	-inf
chr10	59459139	59459219	protein_coding	Anapc16	intron	ENSMUSG00000020107	NonProperStrand	1	chr17	79358060	79358150	protein_coding	Prkd3	intron	ENSMUSG00000024070	NonProperStrand	2	1	-inf
chr4	145081741	145085311	LINE	L1_Mus1	L1	chr4L1_Mus1145079859	ProperStrand	3	chr4	145085418	145086767	LTR	MYSERV6-int	ERVK	chr4MYSERV6-int145084957	ProperStrand	3	3	-inf
chr18	47072755	47072835	LTR	ORR1C1	MaLR	chr18ORR1C147072663	ProperStrand	1	chr18	47072563	47072653	SINE	B2_Mm1t	B2	chr18B2_Mm1t47072477	NonProperStrand	1	1	-inf
chr18	22695143	22695233	LINE	Lx6	L1	chr18Lx622695086	NonProperStrand	2	chr18	22694984	22695064	LTR	RLTR43A	ERVK	chr18RLTR43A22694918	ProperStrand	2	2	-inf
chr11	59006546	59006636	SINE	B1_Mur1	Alu	chr11B1_Mur159006507	ProperStrand	1	chr11	59003943	59004023	protein_coding	Guk1	intron	ENSMUSG00000020444	NonProperStrand	1	1	-inf
chr1	107033445	107033525	LINE	L1MD2	L1	chr1L1MD2107033467	NonProperStrand	1	chr1	107033580	107033670	LTR	MLT1D	MaLR	chr1MLT1D107033587	NonProperStrand	1	1	-inf
chr14	35060960	35061050	protein_coding	Fam35a	intron	ENSMUSG00000041471	ProperStrand	1	chr1	85213657	85213737	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	NonProperStrand	8	1	-inf
chr10	23785346	23785431	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr16	23110823	23110934	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	10	-3.4505
chr17	39847510	39847530	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	20562460	20562477	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	7	1	-3.5679
chr2	90395146	90395167	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	44072653	44072669	protein_coding	Gne	exon	ENSMUSG00000028479	NonProperStrand	2	1	-8.9527
chr6	73853542	73853632	LINE	MusHAL1	L1	chr6MusHAL173852373	ProperStrand	1	chr6	73853790	73853870	LTR	MTD	MaLR	chr6MTD73853780	ProperStrand	1	1	-inf
chr10	108363705	108363794	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-5.1282
chr6	56032119	56032136	protein_coding	Pde1c	utr3	ENSMUSG00000004347	NonProperStrand	2	chr9	123461965	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr9	123461945	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr2	68824572	68824592	protein_coding	Lass6	intron	ENSMUSG00000027035	NonProperStrand	4	1	-6.4942
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	151344285	151344305	LINE	L1Md_T	L1	chr1L1Md_T151339546	ProperStrand	1	1	-inf
chr8	42561833	42561913	LINE	L1_Mur3	L1	chr8L1_Mur342561662	NonProperStrand	1	chr8	43101550	43101640	LINE	Lx9	L1	chr8Lx943100762	NonProperStrand	1	1	-inf
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	chr2	120042232	120042248	protein_coding	Pla2g4e	intron	ENSMUSG00000050211	NonProperStrand	8	1	-13.3768
chr10	71435650	71435740	LINE	Lx7	L1	chr10Lx771435484	NonProperStrand	1	chrX	103545895	103545977	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	NonProperStrand	7	1	-inf
chr3	154270577	154270593	protein_coding	Cryz	intron	ENSMUSG00000028199	NonProperStrand	3	chr7	109520174	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-9.6724
chr7	25272508	25272524	protein_coding	Cadm4	intron	ENSMUSG00000054793	ProperStrand	5	chr16	23110839	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.3911
chr19	15620505	15620585	LINE	Lx	L1	chr19Lx15620471	NonProperStrand	1	chr19	15620378	15620468	LTR	ORR1D2	MaLR	chr19ORR1D215620213	ProperStrand	1	1	-inf
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	chr2	180669478	180669494	protein_coding	Nkain4	utr3	ENSMUSG00000027574	NonProperStrand	1	1	-inf
chr11	102433276	102433294	SINE	B1_Mus1	Alu	chr11B1_Mus1102433162	ProperStrand	2	chr5	114851992	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	2	-inf
chr7	110046424	110046544	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr19	8888596	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	2	-5.0840
chr3	30466638	30466728	LINE	Lx8	L1	chr3Lx830466646	NonProperStrand	1	chr3	30466305	30466385	LTR	MT2_Mm	ERVL	chr3MT2_Mm30466041	NonProperStrand	1	1	-inf
chr10	115341987	115342005	DNA	MER45R	Tip100	chr10MER45R115341860	ProperStrand	1	chr3	123507994	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-inf
chr11	4784519	4784605	protein_coding	Nipsnap1	intron	ENSMUSG00000034285	ProperStrand	1	chr16	11144059	11144118	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-inf
chr11	52128294	52128374	SINE	ID_B1	B4	chr11ID_B152128309	ProperStrand	1	chr11	52128576	52128666	SINE	ID_B1	B4	chr11ID_B152128545	ProperStrand	1	1	-inf
chr16	10026649	10026729	LTR	MER90a	ERV1	chr16MER90a10026602	NonProperStrand	1	chr16	10027141	10027231	LTR	RMER15	ERVL	chr16RMER1510027060	ProperStrand	1	1	-inf
chr7	19740426	19740516	SINE	B1_Mur3	Alu	chr7B1_Mur319740433	ProperStrand	1	chr7	19739784	19739814	SINE	B1_Mus2	Alu	chr7B1_Mus219739774	ProperStrand	1	1	-inf
chr13	43059574	43059628	protein_coding	Phactr1	intron	ENSMUSG00000054728	ProperStrand	7	chr7	127527950	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-13.2728
chr19	45335242	45335263	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	6	chr9	88553234	88553333	lincRNA	Gm17683	intron	ENSMUSG00000091564	ProperStrand	7	1	-16.0983
chr6	113310038	113310105	SINE	B1F	Alu	chr6B1F113309973	NonProperStrand	1	chr6	113307328	113307428	SINE	ID_B1	B4	chr6ID_B1113307258	NonProperStrand	1	1	-inf
chr13	49451507	49451587	protein_coding	Bicd2	intron	ENSMUSG00000037933	ProperStrand	2	chr13	48595987	48596077	protein_coding	Zfp169	intron	ENSMUSG00000050954	NonProperStrand	2	1	-21.5566
chr18	66628612	66628702	LTR	RLTR28	ERVL	chr18RLTR2866628590	ProperStrand	1	chr12	67665705	67665785	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr2	53338419	53338499	LINE	L1_Mus2	L1	chr2L1_Mus253338356	ProperStrand	1	chr2	53343354	53343444	LINE	L1_Mus2	L1	chr2L1_Mus253342449	NonProperStrand	1	1	-inf
chr11	69669659	69669735	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr5	110692081	110692164	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	1	-4.4534
chr17	39848219	39848248	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr11	96003201	96003301	protein_coding	Ttll6	intron	ENSMUSG00000038756	NonProperStrand	2	1	-10.7569
chr17	39846766	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr15	80078499	80078587	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	4	-3.6417
chr6	87429072	87429088	protein_coding	Arhgap25	intron	ENSMUSG00000030047	NonProperStrand	1	chr2	38647891	38647911	protein_coding	Nr6a1	intron	ENSMUSG00000063972	ProperStrand	4	1	-inf
chr10	23785399	23785429	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr15	78173817	78173907	protein_coding	Csf2rb	intron	ENSMUSG00000071713	NonProperStrand	1	1	-inf
chr17	34076898	34076978	protein_coding-noncoding	H2-Ke2	utr3	ENSMUSG00000024309	ProperStrand	1	chr17	34076603	34076693	protein_coding	H2-Ke2	intron	ENSMUSG00000024309	ProperStrand	1	1	-inf
chr5	69292529	69292609	LINE	Lx3_Mus	L1	chr5Lx3_Mus69291493	NonProperStrand	1	chr5	69292806	69292896	LINE	Lx3_Mus	L1	chr5Lx3_Mus69292639	ProperStrand	1	1	-inf
chrX	74015023	74015113	LINE	L1VL1	L1	chrXL1VL174014520	NonProperStrand	2	chr7	19825974	19826054	protein_coding	Opa3	intron	ENSMUSG00000052214	NonProperStrand	1	1	-inf
chr17	39847250	39847272	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	51648212	51648240	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	1	-3.5714
chr11	109011794	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	9859630	9859648	protein_coding	Taf3	intron	ENSMUSG00000025782	ProperStrand	5	1	-5.1059
chr17	39847476	39847529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	13574359	13574381	protein_coding	St8sia6	utr3	ENSMUSG00000003418	NonProperStrand	6	1	-3.8783
chr10	40882964	40883030	LTR	ORR1D2	MaLR	chr10ORR1D240882705	NonProperStrand	1	chr18	35557071	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-inf
chr2	90395145	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr15	37981545	37981563	protein_coding	Ubr5	intron	ENSMUSG00000037487	ProperStrand	2	1	-8.9527
chr19	24942235	24942283	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr4	132309951	132309998	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-4.6888
chr12	111089731	111089821	LINE	L1_Rod	L1	chr12L1_Rod111089463	ProperStrand	1	chr12	110445956	110446036	LINE	Lx	L1	chr12Lx110444903	NonProperStrand	1	1	-inf
chr18	25061373	25061505	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	8	chr1	152517668	152517685	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	13	1	-14.1615
chr5	146261155	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	78188483	78188573	protein_coding	Foxn1	intron	ENSMUSG00000002057	NonProperStrand	3	2	-14.8903
chr17	89238930	89239021	SINE	B1_Mur2	Alu	chr17B1_Mur289238933	ProperStrand	1	chr4	20243857	20243937	protein_coding	Nkain3	intron	ENSMUSG00000055761	ProperStrand	7	1	-inf
chr7	4803091	4803130	protein_coding	Isoc2b	exon	ENSMUSG00000052605	ProperStrand	2	chr2	153250875	153250965	protein_coding	8430427H17Rik	intron	ENSMUSG00000061411	NonProperStrand	8	1	-18.5073
chr3	61924631	61924649	LINE	L1Md_T	L1	chr3L1Md_T61923946	ProperStrand	1	chr17	39847476	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr11	109011748	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	147009458	147009474	protein_coding	Apex2	intron	ENSMUSG00000025269	ProperStrand	4	1	-5.5999
chr11	105922647	105922663	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	1	-13.6871
chr2	90395137	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	21	-17.1450
chr16	82217331	82217411	LINE	Lx	L1	chr16Lx82217137	NonProperStrand	1	chr16	82216869	82216959	SINE	B1_Mm	Alu	chr16B1_Mm82216854	NonProperStrand	1	1	-inf
chr10	122565314	122565394	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr19	10765562	10765652	protein_coding	Vps37c	intron	ENSMUSG00000048832	ProperStrand	2	1	-16.3142
chr6	93502405	93502495	SINE	B2_Mm1a	B2	chr6B2_Mm1a93502379	ProperStrand	1	chr6	93095508	93095588	lincRNA	9530026P05Rik	exon	ENSMUSG00000087573	NonProperStrand	4	1	-inf
chr11	109011748	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	119605136	119605152	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	11	2	-6.0835
chr1	113904088	113904109	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	7	chr5	146260994	146261018	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-6.9037
chr11	6620318	6620423	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	1	-8.6670
chr18	53403823	53403903	LTR	MTD	MaLR	chr18MTD53403528	NonProperStrand	1	chr18	53403968	53404058	SINE	RSINE1	B4	chr18RSINE153403953	NonProperStrand	1	1	-inf
chr4	152430755	152430772	SINE	B4A	B4	chr4B4A152430644	ProperStrand	1	chr9	123461993	123462016	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr17	24720869	24720904	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr4	56897630	56897730	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-4.5188
chr12	99645566	99645657	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr19	42075646	42075663	protein_coding	Ubtd1	intron	ENSMUSG00000025171	ProperStrand	2	1	-14.9970
chr5	107905201	107905281	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	chr19	8888537	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	3	-5.5409
chr13	52592826	52592906	LTR	MLT1D	MaLR	chr13MLT1D52592813	NonProperStrand	1	chr13	52593341	52593431	LTR	ORR1D1	MaLR	chr13ORR1D152593252	NonProperStrand	1	1	-inf
chr17	39848128	39848154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr6	115808032	115808115	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	2	-4.5586
chr4	56741220	56741300	Low_complexity	CT-rich	Low_complexity	chr4CT-rich56741211	NonProperStrand	1	chr4	56740989	56741079	Simple_repeat	(CCTG)n	Simple_repeat	chr4(CCTG)n56740864	NonProperStrand	1	1	-inf
chr11	109011748	109011767	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	81157338	81157355	LTR	RLTR19-int	ERVK	chr10RLTR19-int81156986	NonProperStrand	1	1	-inf
chr17	39847843	39847943	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	28299703	28299726	protein_coding	Scube3	intron	ENSMUSG00000038677	ProperStrand	2	1	-6.4812
chr12	61930886	61930966	LINE	Lx2	L1	chr12Lx261930748	ProperStrand	1	chr12	61930545	61930635	LTR	RLTR9C	ERVK	chr12RLTR9C61930436	ProperStrand	1	1	-inf
chr12	58761969	58761986	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	chr8	126944955	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-8.1591
chr17	39846452	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr6	61180060	61180722	protein_coding	Fam190a	intron	ENSMUSG00000039578	ProperStrand	12	1	-3.0222
chr17	39847438	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	16	2	-3.7765
chr8	92981895	92981913	LTR	MTD	MaLR	chr8MTD92981586	NonProperStrand	6	chr9	15315201	15315265	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-8.0943
chr10	23785398	23785430	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr7	29446473	29446577	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	1	-5.0122
chr1	58910182	58910199	LINE	L2a	L2	chr1L2a58910183	NonProperStrand	1	chr11	69917084	69917100	protein_coding	Asgr2	intron	ENSMUSG00000040963	NonProperStrand	1	1	-inf
chr9	123461802	123461821	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr8	108715040	108715056	protein_coding	Slc7a6	intron	ENSMUSG00000031904	ProperStrand	2	1	-8.2644
chr17	39847216	39847237	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	59237361	59237451	pseudogene	Gm13549	.	ENSMUSG00000080982	NonProperStrand	1	1	-inf
chr2	90395156	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr8	119912640	119912658	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	NonProperStrand	7	1	-5.9461
chr11	55482776	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr11	59076321	59076337	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	7	1	-10.4265
chr13	84856900	84856980	LINE	Lx8	L1	chr13Lx884856792	ProperStrand	1	chr14	33967621	33967710	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	1	-inf
chr15	77619562	77619652	protein_coding-noncoding	Myh9	utr3	ENSMUSG00000022443	NonProperStrand	1	chr15	77619367	77619447	protein_coding	Myh9	exon	ENSMUSG00000022443	NonProperStrand	1	1	-inf
chr4	43426034	43426052	protein_coding	Rusc2	intron	ENSMUSG00000035969	ProperStrand	2	chr13	97190553	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-9.9068
chr14	75972538	75972605	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr17	24719778	24719804	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-7.8189
chr17	39847201	39847247	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	103722903	103722922	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	4	1	-6.8874
chr2	90395129	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	121205019	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	12	-9.3039
chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr13	44869940	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-4.2251
chr11	98809899	98809916	protein_coding	Rara	intron	ENSMUSG00000037992	ProperStrand	2	chr19	8888597	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr14	30685181	30685271	DNA	Arthur1	Tip100	chr14Arthur130685081	NonProperStrand	1	chr14	30684962	30685042	SINE	B1F	Alu	chr14B1F30684943	NonProperStrand	1	1	-inf
chr10	83119309	83119328	Other	RMER1C	Other	chr10RMER1C83118964	ProperStrand	1	chr9	58875818	58875869	protein_coding	Neo1	intron	ENSMUSG00000032340	ProperStrand	5	1	-inf
chr9	108481198	108481278	protein_coding	P4htm	utr3	ENSMUSG00000006675	ProperStrand	1	chr9	108480995	108481085	protein_coding	Wdr6	utr5	ENSMUSG00000066357	ProperStrand	2	1	-inf
chr5	114852013	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr14	118989384	118989403	protein_coding	Abcc4	intron	ENSMUSG00000032849	NonProperStrand	5	1	-8.5249
chr5	146261152	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	112759519	112759535	protein_coding	Trim3	utr3	ENSMUSG00000036989	ProperStrand	2	1	-9.9250
chr4	139338137	139338154	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	5	chr5	107905176	107905308	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-10.2163
chr1	91366488	91366505	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	chr19	8888597	8888617	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-6.3300
chr11	6528114	6528166	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr9	120130466	120130505	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-3.8208
chr6	71599412	71599502	LTR	MYSERV6-int	ERVK	chr6MYSERV6-int71599379	NonProperStrand	5	chr6	71600041	71600121	LTR	RMER19B	ERVK	chr6RMER19B71599710	ProperStrand	5	5	-inf
chrX	101958279	101958369	Other	RMER1C	Other	chrXRMER1C101957693	ProperStrand	1	chrX	101797101	101797181	protein_coding	Zdhhc15	intron	ENSMUSG00000033906	NonProperStrand	2	1	-inf
chr18	56453865	56453945	LINE	L1_Mur2	L1	chr18L1_Mur256452884	ProperStrand	1	chr18	56454002	56454092	Simple_repeat	(GGGA)n	Simple_repeat	chr18(GGGA)n56454018	ProperStrand	1	1	-inf
chr16	23110755	23110886	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr1	160224193	160224210	protein_coding	Fam5b	intron	ENSMUSG00000004031	NonProperStrand	2	1	-8.9865
chr10	97892553	97892643	LINE	L1Md_F2	L1	chr10L1Md_F297891479	ProperStrand	1	chr10	96994985	96995065	LTR	MMERVK10C-int	ERVK	chr10MMERVK10C-int96988669	ProperStrand	2	1	-inf
chr2	81093367	81093457	LINE	L1_Mus3	L1	chr2L1_Mus381093265	NonProperStrand	1	chr2	81093124	81093204	LINE	Lx2	L1	chr2Lx281091898	NonProperStrand	1	1	-inf
chr15	102120255	102120345	SINE	B2_Mm2	B2	chr15B2_Mm2102120142	NonProperStrand	1	chr15	102119992	102120072	SINE	PB1D9	Alu	chr15PB1D9102119963	ProperStrand	1	1	-inf
chr2	50599665	50599745	Simple_repeat	(CACTA)n	Simple_repeat	chr2(CACTA)n50599614	NonProperStrand	1	chr2	50599422	50599512	Simple_repeat	(CACTG)n	Simple_repeat	chr2(CACTG)n50599322	NonProperStrand	1	1	-inf
chr2	26658806	26658896	LINE	Lx5	L1	chr2Lx526658595	ProperStrand	1	chr2	26659014	26659094	LTR	RLTR15	ERVK	chr2RLTR1526658974	ProperStrand	1	1	-inf
chr13	16838897	16838987	SINE	B1F	Alu	chr13B1F16838907	NonProperStrand	1	chr13	16839078	16839158	Simple_repeat	(CATATA)n	Simple_repeat	chr13(CATATA)n16839082	NonProperStrand	1	1	-inf
chr17	39847439	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	106501240	106501326	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	13	-3.7418
chr12	30875833	30875923	protein_coding	Sntg2	intron	ENSMUSG00000020672	NonProperStrand	2	chr12	31044792	31044872	protein_coding	Sntg2	intron	ENSMUSG00000020672	ProperStrand	3	1	-20.8207
chr3	89342032	89342345	protein_coding	Kcnn3	intron	ENSMUSG00000000794	NonProperStrand	9	chr16	23110838	23110868	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.1451
chr7	116969404	116969494	protein_coding	Scube2	intron	ENSMUSG00000007279	ProperStrand	2	chr17	29782156	29782236	protein_coding	Ftsjd2	intron	ENSMUSG00000024019	NonProperStrand	1	1	-inf
chr4	82338904	82338994	antisense	Gm11269	.	ENSMUSG00000086293	ProperStrand	1	chr4	82338611	82338691	protein_coding	Nfib	intron	ENSMUSG00000008575	NonProperStrand	5	1	-inf
chr17	39848496	39848794	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr17	39846373	39847011	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	9	-3.0162
chr1	173858248	173858328	protein_coding	Slamf6	intron	ENSMUSG00000015314	NonProperStrand	1	chr1	174027761	174027851	protein_coding	Copa	intron	ENSMUSG00000026553	ProperStrand	1	1	-inf
chr11	105337751	105337832	LTR	ORR1A0	MaLR	chr11ORR1A0105337592	NonProperStrand	2	chr5	67193437	67193455	protein_coding	Limch1	intron	ENSMUSG00000037736	ProperStrand	3	1	-20.8207
chr11	109011747	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	43412524	43412545	LINE	L1Md_F2	L1	chr3L1Md_F243410761	ProperStrand	1	1	-inf
chr10	53503041	53503060	LINE	L1Md_T	L1	chr10L1Md_T53502840	ProperStrand	2	chr16	23111315	23111362	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-8.9865
chr17	39847179	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	159340353	159340369	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	8	1	-5.3820
chr14	75847923	75847976	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr10	127666552	127666652	protein_coding	Mip	intron	ENSMUSG00000025389	NonProperStrand	1	1	-inf
chr11	109012010	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr19	8888597	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	2	-4.2645
chr10	23785349	23785398	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr19	10606972	10607815	protein_coding	Cpsf7	exon	ENSMUSG00000034820	ProperStrand	1	1	-inf
chr2	137013080	137013160	LTR	MYSERV16_I-int	ERVK	chr2MYSERV16_I-int137012992	ProperStrand	1	chr2	137012894	137012984	LTR	RLTR20B1	ERVK	chr2RLTR20B1137012581	ProperStrand	1	1	-inf
chr14	122255527	122255607	LTR	ORR1C1	MaLR	chr14ORR1C1122255401	ProperStrand	2	chr14	122247661	122247751	LTR	RMER10B	ERVL	chr14RMER10B122247384	ProperStrand	1	1	-inf
chr4	41130234	41130324	protein_coding-noncoding	Ube2r2	utr5	ENSMUSG00000036241	NonProperStrand	1	chr4	41130525	41130605	protein_coding	Ube2r2	intron	ENSMUSG00000036241	NonProperStrand	1	1	-inf
chr5	144825397	144825939	LINE	Lx5	L1	chr5Lx5144825874	ProperStrand	1	chr5	144826563	144826643	SINE	B1_Mus2	Alu	chr5B1_Mus2144826539	ProperStrand	1	1	-inf
chr16	23110380	23111756	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr4	132309497	132310368	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	5	-6.8339
chrX	87238364	87238391	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr8	25716848	25716866	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	4	1	-11.6984
chr11	94487837	94487855	LTR	MERVL-int	ERVL	chr11MERVL-int94484851	NonProperStrand	1	chr2	30845481	30845500	protein_coding	Usp20	intron	ENSMUSG00000026854	NonProperStrand	1	1	-inf
chr10	128439467	128439483	LTR	RLTR6-int	ERV1	chr10RLTR6-int128438457	NonProperStrand	1	chr19	25570198	25570322	SINE	B2_Mm2	B2	chr19B2_Mm225570173	NonProperStrand	1	1	-inf
chr10	90826722	90826812	LINE	L1Md_F2	L1	chr10L1Md_F290826472	ProperStrand	1	chr10	90826855	90826935	LINE	Lx7	L1	chr10Lx790826848	ProperStrand	1	1	-inf
mmu-miR-1949	0	24	miRNA	mmu-miR-1949	.	mmu-miR-1949	ProperStrand	3	chr18	35554507	35554592	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-10.9572
chr4	117645247	117645268	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	6	chr13	97190546	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-7.2176
chrX	23235874	23235899	LINE	L1Md_F2	L1	chrXL1Md_F223232352	NonProperStrand	1	chr9	120130463	120130563	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-inf
chr4	141402053	141402133	antisense	1810035I16Rik	.	ENSMUSG00000086818	ProperStrand	1	chr10	101456157	101456247	protein_coding	Mgat4c	intron	ENSMUSG00000019888	ProperStrand	2	1	-inf
chr4	132309975	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr19	11783129	11785398	protein_coding	Gm97	intron	ENSMUSG00000055933	NonProperStrand	3	1	-8.6506
chr9	123462143	123462166	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr6	48445117	48445135	protein_coding	Sspo	exon	ENSMUSG00000029797	NonProperStrand	5	1	-5.9940
chr6	124892307	124892397	SINE	B2_Mm1a	B2	chr6B2_Mm1a124892305	ProperStrand	1	chr6	124892112	124892192	Simple_repeat	(TTTC)n	Simple_repeat	chr6(TTTC)n124892091	ProperStrand	1	1	-inf
chr13	74487303	74487383	protein_coding-noncoding	Sdha	utr3	ENSMUSG00000021577	ProperStrand	1	chr13	74487130	74487220	protein_coding	Sdha	intron	ENSMUSG00000021577	ProperStrand	1	1	-inf
chr7	11990637	11990727	LINE	Lx2A1	L1	chr7Lx2A111990552	ProperStrand	1	chr7	11990330	11990410	LINE	Lx8	L1	chr7Lx811990346	NonProperStrand	1	1	-inf
chr11	109011794	109011815	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	146464781	146464798	protein_coding	Prkacb	intron	ENSMUSG00000005034	NonProperStrand	3	1	-6.2761
chr10	66772862	66772942	DNA	RCHARR1	MER1_type	chr10RCHARR166772467	ProperStrand	1	chr10	66772960	66773050	SINE	B4A	B4	chr10B4A66772931	ProperStrand	1	1	-inf
chr17	39847097	39847303	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr9	123461833	123461903	protein_coding	Sacm1l	exon	ENSMUSG00000025240	NonProperStrand	27	2	-13.4182
chr10	23785344	23785426	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	109012008	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	3	-5.3874
chr11	6620341	6620421	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr11	87443369	87443459	protein_coding	Hsf5	intron	ENSMUSG00000070345	ProperStrand	2	1	-15.4612
chr7	141448802	141448939	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr11	106501242	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	2	-7.8482
chr17	39845331	39845421	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	43	chr16	39025191	39025207	protein_coding	Igsf11	exon	ENSMUSG00000022790	NonProperStrand	3	1	-13.9459
chr11	69669688	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr17	24719718	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	2	-3.2681
chr2	124613518	124613598	LINE	Lx4B	L1	chr2Lx4B124612634	NonProperStrand	1	chr2	124613693	124613783	LTR	MTD	MaLR	chr2MTD124613592	NonProperStrand	1	1	-inf
chrX	4899374	4899402	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr2	5379291	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-4.0652
chr6	87997239	87997259	SINE	B1_Mur4	Alu	chr6B1_Mur487997219	ProperStrand	1	chr9	123462006	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr11	94944614	94944772	LTR	ORR1E	MaLR	chr11ORR1E94944268	ProperStrand	5	chr17	24719675	24719747	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-10.0146
chr2	177478977	177479057	LINE	L1VL1	L1	chr2L1VL1177476150	NonProperStrand	3	chrX	154906586	154906676	LINE	Lx7	L1	chrXLx7154906262	ProperStrand	1	1	-inf
chr8	31149901	31149950	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	10	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-6.4690
chrX	73677352	73677432	LINE	L1_Mur2	L1	chrXL1_Mur273677036	ProperStrand	1	chrX	73677449	73678721	LINE	Lx2	L1	chrXLx273678315	NonProperStrand	1	1	-inf
chr17	12919665	12919711	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	chr2	130276252	130276317	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-4.1962
chr1	152837182	152837198	protein_coding	Hmcn1	intron	ENSMUSG00000066842	NonProperStrand	6	chr8	13876093	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-11.0861
chr5	13132779	13132869	protein_coding	Sema3a	intron	ENSMUSG00000028883	NonProperStrand	1	chr5	13133875	13133955	protein_coding	Sema3a	intron	ENSMUSG00000028883	ProperStrand	4	1	-inf
chrX	123103876	123103895	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	8	chr17	39847181	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-5.3820
chr15	85543519	85543599	LTR	MTD	MaLR	chr15MTD85543500	ProperStrand	1	chr15	85543805	85543895	SINE	B2_Mm2	B2	chr15B2_Mm285543771	NonProperStrand	1	1	-inf
chr2	121981273	121981353	protein_coding	Patl2	intron	ENSMUSG00000027233	NonProperStrand	4	chr2	121986969	121987059	protein_coding	Trim69	intron	ENSMUSG00000033368	ProperStrand	1	1	-inf
chr13	95330625	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr13	44869578	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	3	-5.1166
chr13	95330598	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr2	122123774	122123792	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	5	-10.0572
chr5	151479830	151479920	protein_coding	Pds5b	intron	ENSMUSG00000034021	NonProperStrand	1	chr8	29776004	29776084	protein_coding	Unc5d	intron	ENSMUSG00000063626	NonProperStrand	2	1	-inf
chr18	71276147	71276237	LINE	Lx7	L1	chr18Lx771276101	NonProperStrand	1	chr18	71275956	71276036	LTR	IAPLTR4	ERVK	chr18IAPLTR471275755	NonProperStrand	1	1	-inf
chr19	12235897	12235977	LINE	L1Md_T	L1	chr19L1Md_T12233723	NonProperStrand	1	chr19	12236101	12236191	LTR	ORR1E	MaLR	chr19ORR1E12235989	NonProperStrand	1	1	-inf
chr5	104791497	104791587	LTR	IAPEy-int	ERVK	chr5IAPEy-int104790773	ProperStrand	2	chr5	104544084	104544164	lincRNA	Gm16990	exon	ENSMUSG00000087488	ProperStrand	1	1	-inf
chr11	97781689	97781725	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr17	50420128	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	1	-7.0479
chr4	47183567	47183647	LTR	MTE2a	MaLR	chr4MTE2a47183334	NonProperStrand	1	chr4	47183112	47183202	LTR	ORR1E	MaLR	chr4ORR1E47182972	NonProperStrand	1	1	-inf
chr4	106561338	106561396	SINE	B1_Mm	Alu	chr4B1_Mm106561269	NonProperStrand	1	chr4	106561175	106561249	SINE	B2_Mm2	B2	chr4B2_Mm2106561063	NonProperStrand	1	1	-inf
chr4	117645239	117645311	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	6	chr2	5379272	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-6.7921
chr3	135551074	135551090	protein_coding	Slc39a8	utr3	ENSMUSG00000053897	NonProperStrand	3	chr10	77268915	77268976	protein_coding	Gm7137	intron	ENSMUSG00000090579	NonProperStrand	2	1	-20.7434
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr10	128084145	128084202	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	6	1	-13.5222
chr4	132317017	132317038	SINE	B3A	B2	chr4B3A132316990	ProperStrand	1	chr16	23110770	23110788	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-inf
chr5	146260994	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr4	145745107	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	2	-6.5321
chr2	90395128	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	109520119	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	13	-9.3852
chr16	23110401	23110449	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr6	61180060	61180721	protein_coding	Fam190a	intron	ENSMUSG00000039578	ProperStrand	12	1	-4.8713
chr17	4082245	4082264	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	chr17	39847101	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-3.3932
chr17	47149181	47149261	LTR	ORR1D1	MaLR	chr17ORR1D147148997	ProperStrand	1	chr17	47149358	47149448	SINE	PB1D10	Alu	chr17PB1D1047149377	NonProperStrand	1	1	-inf
chr3	89561162	89561242	protein_coding	Chrnb2	intron	ENSMUSG00000027950	ProperStrand	1	chr3	89537321	89537411	protein_coding	Adar	intron	ENSMUSG00000027951	ProperStrand	3	1	-inf
chr6	3201474	3201557	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr5	121205008	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	2	-4.7980
chr17	39847222	39847306	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr7	35583370	35583429	protein_coding	Chst8	intron	ENSMUSG00000060402	NonProperStrand	1	1	-inf
chr6	59251090	59251170	LINE	L1M2	L1	chr6L1M259251100	ProperStrand	1	chr6	59250764	59250854	LINE	Lx8	L1	chr6Lx859250702	ProperStrand	1	1	-inf
chr11	69669741	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr12	82363039	82363080	protein_coding	Slc8a3	intron	ENSMUSG00000079055	NonProperStrand	5	1	-8.5592
chrX	106950578	106950668	LINE	L1Md_F2	L1	chrXL1Md_F2106950477	ProperStrand	1	chrX	106950303	106950383	LINE	L1_Mus3	L1	chrXL1_Mus3106948823	NonProperStrand	1	1	-inf
chrX	96784224	96784314	SINE	B3	B2	chrXB396784127	ProperStrand	1	chrX	96784005	96784085	SINE	MIRc	MIR	chrXMIRc96784003	NonProperStrand	1	1	-inf
chr17	39847665	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	69823404	69823453	protein_coding	Dvl2	utr3	ENSMUSG00000020888	NonProperStrand	1	1	-inf
chr3	35826968	35826986	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-9.9986
chr1	78957560	78957640	LINE	L1M2	L1	chr1L1M278957516	NonProperStrand	1	chr1	78957248	78957338	LINE	L1ME3B	L1	chr1L1ME3B78957149	NonProperStrand	1	1	-inf
chr2	5379277	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr15	6689844	6689860	protein_coding	Rictor	intron	ENSMUSG00000050310	NonProperStrand	1	1	-inf
chr12	59598188	59598278	LINE	L1Md_A	L1	chr12L1Md_A59594614	NonProperStrand	1	chr12	67667928	67668008	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr14	75847946	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr5	85939306	85939326	LINE	L1Md_F	L1	chr5L1Md_F85936677	NonProperStrand	6	1	-10.3403
chr5	146261268	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr11	69669692	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	2	-4.3005
chr5	144802188	144802268	SINE	B3A	B2	chr5B3A144802089	ProperStrand	1	chr5	144802369	144802459	SINE	B4A	B4	chr5B4A144802341	ProperStrand	1	1	-inf
chr1	138554555	138554635	LINE	L1Md_F2	L1	chr1L1Md_F2138554310	ProperStrand	1	chr1	138554800	138554890	SINE	B1_Mm	Alu	chr1B1_Mm138554767	NonProperStrand	1	1	-inf
chr11	109011753	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	8252249	8252280	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	2	-4.9557
chr19	41902204	41902284	SINE	B2_Mm2	B2	chr19B2_Mm241902078	NonProperStrand	1	chr19	41902544	41902633	SINE	B3	B2	chr19B341902453	NonProperStrand	1	1	-inf
chr1	91057447	91057537	LTR	MT2B2	ERVL	chr1MT2B291057029	NonProperStrand	1	chr6	42351029	42351045	protein_coding	Tas2r143	exon	ENSMUSG00000046652	NonProperStrand	1	1	-inf
chr12	59040408	59040522	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	4	chr19	56808348	56808377	Unknown	MamRep605	Unknown	chr19MamRep60556808327	ProperStrand	1	1	-inf
chr7	12369465	12369555	LINE	L1_Mur3	L1	chr7L1_Mur312369334	ProperStrand	1	chr7	12369949	12370029	LINE	L1_Mur3	L1	chr7L1_Mur312369871	ProperStrand	1	1	-inf
chr17	39846462	39847124	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	122357167	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	7	-3.2275
chr5	113917922	113918002	LTR	MTC	MaLR	chr5MTC113917722	ProperStrand	1	chr5	113917554	113917644	SINE	MIR	MIR	chr5MIR113917543	ProperStrand	1	1	-inf
chr6	147678803	147678822	LINE	L1M4c	L1	chr6L1M4c147678710	ProperStrand	1	chr12	17705457	17705539	protein_coding	Hpcal1	intron	ENSMUSG00000071379	NonProperStrand	1	1	-inf
chr17	25031694	25031774	protein_coding-noncoding	Eme2	utr3	ENSMUSG00000073436	ProperStrand	1	chr17	25031476	25031566	protein_coding	Eme2	intron	ENSMUSG00000073436	ProperStrand	1	1	-inf
chr16	73035955	73042994	protein_coding	Robo1	exon	ENSMUSG00000022883	ProperStrand	3	chr13	97190552	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.8129
chr5	146261266	146261322	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr10	119471329	119471391	protein_coding	Grip1	intron	ENSMUSG00000034813	ProperStrand	14	1	-8.6153
chr19	8723999	8724034	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr15	31494127	31496073	SINE	B1_Mur2	Alu	chr15B1_Mur231494254	ProperStrand	1	1	-inf
chr9	110281285	110281331	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	chr15	76645811	76645883	protein_coding	Arhgap39	intron	ENSMUSG00000033697	ProperStrand	7	1	-10.7503
chr11	109012073	109012100	LTR	RMER17B	ERVK	chr11RMER17B109012078	NonProperStrand	4	chr9	123462115	123462142	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-6.4942
chr11	49190413	49190493	LINE	Lx7	L1	chr11Lx749190204	ProperStrand	1	chr11	49190022	49190112	SINE	B1_Mus1	Alu	chr11B1_Mus149190042	ProperStrand	1	1	-inf
chr17	39848055	39848076	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	87426782	87426882	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	3	1	-5.4090
chr5	146261130	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr10	76608163	76609267	protein_coding	Col18a1	intron	ENSMUSG00000001435	ProperStrand	12	1	-5.7818
chr13	53414233	53414313	SINE	B3	B2	chr13B353414172	ProperStrand	1	chr13	53413964	53414054	SINE	B3A	B2	chr13B3A53413903	ProperStrand	1	1	-inf
chr18	4348858	4348948	protein_coding-noncoding	Map3k8	utr3	ENSMUSG00000024235	ProperStrand	1	chr18	4348997	4349077	protein_coding	Map3k8	exon	ENSMUSG00000024235	ProperStrand	2	1	-inf
chr17	12922837	12922867	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	chr2	37400104	37400140	protein_coding	Strbp	intron	ENSMUSG00000026915	ProperStrand	3	1	-13.4122
chr1	9940630	9940710	LTR	MTEa	MaLR	chr1MTEa9940630	NonProperStrand	2	chr4	3599679	3599769	Simple_repeat	(GAAA)n	Simple_repeat	chr4(GAAA)n3599690	ProperStrand	1	1	-inf
chr17	31299831	31299911	antisense	Gm15318	.	ENSMUSG00000086010	ProperStrand	1	chr17	31300017	31300107	protein_coding	Tff1	intron	ENSMUSG00000024032	NonProperStrand	1	1	-inf
chr10	23785346	23785410	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr5	137606849	137606876	Unknown	YREP_Mm	Unknown	chr5YREP_Mm137606793	ProperStrand	1	1	-inf
chr15	99093838	99093858	LINE	L1MC	L1	chr15L1MC99093825	NonProperStrand	2	chr10	105238486	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-15.0917
chr11	109011748	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr14	67520745	67520762	LINE	L1MB5	L1	chr14L1MB567520445	NonProperStrand	1	1	-inf
chr11	109011784	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	126556794	126556852	LTR	IAPEz-int	ERVK	chr7IAPEz-int126556580	ProperStrand	2	1	-7.3577
chr13	38952227	38952317	LTR	ORR1C2	MaLR	chr13ORR1C238952076	ProperStrand	1	chr13	38952370	38952450	LTR	RMER4A	ERVK	chr13RMER4A38952347	ProperStrand	1	1	-inf
chr5	30557505	30557524	LINE	Lx5	L1	chr5Lx530557433	NonProperStrand	1	chr17	39847446	39847551	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr17	39848099	39848141	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr1	89461838	89461855	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	3	1	-9.6614
chr3	67612606	67612622	LINE	Lx7	L1	chr3Lx767612583	ProperStrand	7	chr16	23111394	23111427	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-11.6567
chr1	91423922	91423941	protein_coding	Agap1	intron	ENSMUSG00000055013	ProperStrand	6	chr8	95746100	95746127	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-11.7684
chr7	119693610	119693627	protein_coding-noncoding	Parva	utr3	ENSMUSG00000030770	NonProperStrand	1	chr4	132309940	132310066	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr1	113904234	113904279	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	7	chr17	39847701	39847801	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-3.5679
chr11	60931792	60931822	LTR	MTC	MaLR	chr11MTC60931428	NonProperStrand	4	chr12	78350927	78351043	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	1	-14.3544
chr3	123507960	123508000	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr15	76249554	76249589	protein_coding	Heatr7a	intron	ENSMUSG00000022558	ProperStrand	4	1	-8.1644
chr2	24801327	24801407	SINE	B1_Mus1	Alu	chr2B1_Mus124801249	ProperStrand	1	chr2	24801116	24801206	SINE	B2_Mm2	B2	chr2B2_Mm224801048	ProperStrand	1	1	-inf
chr2	129178369	129178385	LINE	L1Md_F2	L1	chr2L1Md_F2129176157	NonProperStrand	1	chr2	90395138	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr1	139074645	139074735	LINE	L2b	L2	chr1L2b139074594	ProperStrand	1	chr1	139074889	139074969	LTR	MTE2a	MaLR	chr1MTE2a139074907	NonProperStrand	1	1	-inf
chr3	138828761	138828841	DNA	URR1A	MER1_type	chr3URR1A138828630	NonProperStrand	2	chr5	146835063	146835612	LINE	L1_Mur2	L1	chr5L1_Mur2146834958	NonProperStrand	2	2	-inf
chr2	179587672	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	10	chr5	147580304	147580320	protein_coding	Usp12	intron	ENSMUSG00000029640	ProperStrand	2	1	-18.0359
chr17	52264448	52264528	LTR	LTR16C	ERVL	chr17LTR16C52264291	NonProperStrand	1	chr17	52264128	52264218	SINE	B3	B2	chr17B352264131	NonProperStrand	1	1	-inf
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	3	-8.6025
chr5	41745216	41745236	LTR	RMER17B	ERVK	chr5RMER17B41744413	ProperStrand	2	chr15	80012571	80012591	protein_coding	Mgat3	intron	ENSMUSG00000042428	NonProperStrand	3	1	-20.8207
chr17	39847278	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr9	119102643	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	7	1	-5.6609
chr4	33771341	33771431	LINE	Lx7	L1	chr4Lx733770755	ProperStrand	1	chr4	33771890	33771970	LINE	Lx7	L1	chr4Lx733771897	ProperStrand	1	1	-inf
chr10	29128176	29128256	LTR	MTE-int	MaLR	chr10MTE-int29128101	NonProperStrand	1	chr10	29128447	29128537	LTR	RLTR17	ERVK	chr10RLTR1729128433	NonProperStrand	1	1	-inf
chr10	96015216	96015306	LTR	MTEa	MaLR	chr10MTEa96015180	NonProperStrand	1	chr10	96015651	96015731	SINE	B4A	B4	chr10B4A96015603	NonProperStrand	1	1	-inf
chr3	38275415	38275495	LINE	L1VL2	L1	chr3L1VL238275389	ProperStrand	1	chr3	38274824	38274914	LINE	Lx	L1	chr3Lx38274564	ProperStrand	1	1	-inf
chr15	85177761	85177788	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	chr7	109520235	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-5.1341
chr11	109622326	109622406	LTR	RMER5	ERV1	chr11RMER5109622181	NonProperStrand	1	chr11	109622668	109622758	SINE	B3A	B2	chr11B3A109622586	ProperStrand	1	1	-inf
chr6	125224994	125225084	SINE	B2_Mm2	B2	chr6B2_Mm2125224983	NonProperStrand	1	chr6	125224827	125224907	SINE	B3	B2	chr6B3125224816	ProperStrand	1	1	-inf
chr9	44789992	44790012	protein_coding	Cd3d	exon	ENSMUSG00000032094	NonProperStrand	2	chr2	158358359	158358473	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-12.7698
chr2	168601393	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr2	5379280	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-4.3343
chr12	108699447	108699537	LTR	MTD	MaLR	chr12MTD108699466	ProperStrand	3	chr12	108699560	108699640	LTR	RMER15	ERVL	chr12RMER15108699539	ProperStrand	3	3	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-3.5994
chr17	36978456	36978510	protein_coding	Trim26	intron	ENSMUSG00000024457	NonProperStrand	1	chr10	80654380	80654438	protein_coding	Dapk3	intron	ENSMUSG00000034974	NonProperStrand	4	1	-inf
chr11	97781702	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr16	18240718	18240750	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	1	-6.8012
chr5	146261163	146261225	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-3.4876
chr8	95621234	95621314	LINE	L1MCc	L1	chr8L1MCc95621121	NonProperStrand	1	chr8	95621591	95621680	LTR	RLTR13D5	ERVK	chr8RLTR13D595621522	NonProperStrand	1	1	-inf
chr1	98428267	98428284	LTR	BGLII_Mus	ERVK	chr1BGLII_Mus98428119	ProperStrand	1	chr3	123507960	123508003	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-inf
chr8	98378833	98378913	LINE	L1MD1	L1	chr8L1MD198378825	NonProperStrand	1	chr8	98379061	98379151	SINE	B3	B2	chr8B398378954	NonProperStrand	1	1	-inf
chr2	102070018	102070108	LTR	MLT1F1	MaLR	chr2MLT1F1102069936	ProperStrand	1	chr2	102070221	102070301	LTR	MLT1F1	MaLR	chr2MLT1F1102070216	ProperStrand	1	1	-inf
chr18	53176999	53177089	SINE	RSINE1	B4	chr18RSINE153176968	NonProperStrand	1	chr18	53176840	53176920	Simple_repeat	(TG)n	Simple_repeat	chr18(TG)n53176683	ProperStrand	1	1	-inf
chr17	70963741	70963791	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr4	106639678	106639698	protein_coding	Ssbp3	intron	ENSMUSG00000061887	NonProperStrand	7	1	-12.0976
chr16	23110390	23110450	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr16	46390075	46390093	protein_coding	Pvrl3	utr3	ENSMUSG00000022656	NonProperStrand	1	1	-inf
chrX	4136309	4136351	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	chr6	115808032	115808102	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-8.0721
chr11	6620348	6620438	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr6	82486801	82486822	protein_coding	Tacr1	intron	ENSMUSG00000030043	ProperStrand	3	1	-14.3632
chr17	27991984	27992064	SINE	B1F2	Alu	chr17B1F227991986	ProperStrand	1	chr17	27992166	27992256	SINE	B1_Mus2	Alu	chr17B1_Mus227992157	NonProperStrand	1	1	-inf
chr13	31766075	31766165	LINE	L1_Mur3	L1	chr13L1_Mur331765931	NonProperStrand	2	chr13	32168567	32168647	protein_coding	Gmds	intron	ENSMUSG00000038372	NonProperStrand	6	2	-inf
chr11	51737836	51737905	SINE	B3	B2	chr11B351737669	NonProperStrand	6	chr8	70895768	70895858	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-8.4947
chr17	69530050	69530130	protein_coding	Epb4.1l3	intron	ENSMUSG00000024044	ProperStrand	2	chr15	26674938	26675028	protein_coding	Fbxl7	intron	ENSMUSG00000043556	NonProperStrand	4	1	-19.9190
chr9	120098965	120099045	LTR	MLT2B1	ERVL	chr9MLT2B1120098869	NonProperStrand	1	chr9	120099325	120099415	LTR	MTB	MaLR	chr9MTB120099062	ProperStrand	1	1	-inf
chr5	44966809	44966889	protein_coding	Ldb2	intron	ENSMUSG00000039706	NonProperStrand	2	chr16	60022684	60022774	protein_coding	Epha6	intron	ENSMUSG00000055540	NonProperStrand	8	1	-18.5073
chr16	84945267	84945347	LINE	L1_Mus1	L1	chr16L1_Mus184945005	NonProperStrand	1	chr16	85064897	85064987	protein_coding	App	intron	ENSMUSG00000022892	ProperStrand	11	1	-inf
chr17	39848615	39848695	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr9	64570608	64570698	protein_coding	Rab11a	intron	ENSMUSG00000004771	NonProperStrand	1	1	-inf
chrX	87238359	87238409	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr11	117077242	117077349	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-7.9714
chr11	106501242	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr17	33824444	33824474	protein_coding	March2	utr3	ENSMUSG00000079557	ProperStrand	6	1	-9.2802
chr17	39846788	39846806	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	26786344	26786362	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	12	1	-3.0222
chr5	110692047	110692067	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	chr2	76863395	76863411	protein_coding	Ccdc141	intron	ENSMUSG00000044033	ProperStrand	5	1	-13.0467
chr15	64334904	64334922	LINE	Lx6	L1	chr15Lx664334905	ProperStrand	3	chr4	132352447	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	1	-10.4236
chr11	102318171	102318251	protein_coding-noncoding	Itga2b	utr3	ENSMUSG00000034664	NonProperStrand	1	chr11	102318286	102318376	protein_coding	Itga2b	exon	ENSMUSG00000034664	NonProperStrand	2	1	-inf
chr11	74169920	74170010	LINE	L1_Mur2	L1	chr11L1_Mur274169280	NonProperStrand	1	chr8	13417111	13417191	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	11	1	-inf
chr15	77767195	77767285	LTR	MTEa	MaLR	chr15MTEa77767103	NonProperStrand	2	chr15	77767323	77767510	SINE	B1_Mus1	Alu	chr15B1_Mus177767367	NonProperStrand	1	1	-inf
chrX	143101133	143101149	LINE	Lx2B	L1	chrXLx2B143100786	ProperStrand	1	chr16	23110820	23110837	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr11	109011791	109011827	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr7	110046441	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	ProperStrand	1	1	-inf
chr8	95746059	95746078	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	chr17	35001681	35001743	protein_coding	Gm20547	exon	ENSMUSG00000092511	NonProperStrand	1	1	-inf
chr1	122357187	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr17	50420137	50420161	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	1	-7.3358
chr11	69667863	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr16	23110835	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	8	-3.2001
chr17	39847771	39847796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	153482669	153482685	protein_coding	Trp73	intron	ENSMUSG00000029026	ProperStrand	2	1	-6.4812
chr18	37850190	37850270	protein_coding	Pcdhga9	intron	ENSMUSG00000023036	NonProperStrand	7	chr19	45470107	45470197	protein_coding	Btrc	intron	ENSMUSG00000025217	ProperStrand	4	1	-17.0104
chr11	99017062	99017117	LTR	RLTR25B	ERVK	chr11RLTR25B99017055	ProperStrand	18	chr9	15315186	15315241	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	2	-9.5359
chr13	44869599	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr1	152567427	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	13	1	-5.6660
chr12	51365347	51365364	LINE	L1MC3	L1	chr12L1MC351365250	NonProperStrand	1	chr1	131327303	131327393	protein_coding	Thsd7b	utr5	ENSMUSG00000042581	ProperStrand	64	1	-inf
chr14	56678789	56685015	LINE	L1Md_F2	L1	chr14L1Md_F256682484	ProperStrand	1	chr5	146261266	146261324	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	ProperStrand	2	1	-inf
chr4	132352442	132352526	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr2	126157291	126157307	protein_coding	Atp8b4	intron	ENSMUSG00000060131	ProperStrand	3	1	-10.4236
chr7	86434647	86434666	protein_coding	Abhd2	intron	ENSMUSG00000039202	NonProperStrand	2	chr13	97190562	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-9.9068
chr5	146261124	146261223	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	72069982	72069999	protein_coding	Slc13a5	intron	ENSMUSG00000020805	ProperStrand	1	1	-inf
chrX	9913917	9913933	DNA	Charlie1a	MER1_type	chrXCharlie1a9913548	NonProperStrand	1	chr17	39847799	39847822	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr17	39847690	39847714	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	57386312	57386489	protein_coding	Ablim1	intron	ENSMUSG00000025085	NonProperStrand	6	3	-10.3191
chr14	75847946	75848009	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chrX	87238359	87238404	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	1	-4.7709
chr4	29916276	29916356	SINE	B1F	Alu	chr4B1F29916295	ProperStrand	1	chr4	29916428	29916518	Simple_repeat	(TA)n	Simple_repeat	chr4(TA)n29916427	ProperStrand	1	1	-inf
chr15	92681031	92681048	DNA	Charlie4z	MER1_type	chr15Charlie4z92680998	ProperStrand	1	chr17	39847844	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr17	12992128	12992147	antisense	Airn	.	ENSMUSG00000078247	NonProperStrand	6	chr8	126944899	126944983	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-9.7989
chr11	109011746	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	141297560	141301643	protein_coding	Adam12	intron	ENSMUSG00000054555	ProperStrand	11	1	-3.5018
chr3	66755677	66755757	LTR	ORR1C2-int	MaLR	chr3ORR1C2-int66754473	ProperStrand	1	chr3	66755843	66755933	LTR	ORR1C2	MaLR	chr3ORR1C266755761	ProperStrand	1	1	-inf
chr19	8888598	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	chr10	80417216	80417319	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	6	1	-8.2509
chr8	85050206	85050273	LINE	L1Md_A	L1	chr8L1Md_A85049904	NonProperStrand	2	chr5	146260994	146261020	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-9.9250
chr14	21400656	21400746	protein_coding-noncoding	Usp54	utr3	ENSMUSG00000034235	NonProperStrand	1	chr14	21400359	21400439	protein_coding	Usp54	intron	ENSMUSG00000034235	NonProperStrand	1	1	-inf
chr11	97781663	97781747	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr4	43492785	43492848	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	1	-5.9931
chr9	111492088	111492106	protein_coding	Stac	intron	ENSMUSG00000032502	ProperStrand	1	chr8	70895759	70895881	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-inf
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr19	26840642	26840662	protein_coding	Smarca2	intron	ENSMUSG00000024921	ProperStrand	3	1	-14.0423
chrX	37082911	37083029	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr2	122123774	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	4	-8.2414
chr11	109011784	109011842	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	100180180	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	6	1	-4.7173
chr5	135054022	135054114	LINE	L1Md_F2	L1	chr5L1Md_F2135054047	NonProperStrand	9	chr9	15313812	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-7.2279
chr17	39847054	39847079	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	78400788	78400805	protein_coding	Nlk	intron	ENSMUSG00000017376	NonProperStrand	1	1	-inf
chr3	123507994	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr14	32191950	32192050	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	1	-4.3485
chr7	37245887	37245904	LTR	MLT1A0	MaLR	chr7MLT1A037245688	ProperStrand	2	chr17	12919584	12919624	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	56	1	-14.5099
chr13	44869606	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr9	65201728	65201756	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	4	1	-8.1902
chr2	5379276	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr1	93055987	93056004	protein_coding	Rbm44	intron	ENSMUSG00000070732	NonProperStrand	2	1	-9.4768
chr11	43920060	43920150	lincRNA	Gm12153	intron	ENSMUSG00000087172	ProperStrand	3	chr12	41360249	41360329	protein_coding	Dock4	intron	ENSMUSG00000035954	ProperStrand	4	1	-18.9366
chr7	29296941	29297021	LINE	L1_Mur3	L1	chr7L1_Mur329296962	ProperStrand	1	chr7	29296816	29296906	SINE	B1_Mus2	Alu	chr7B1_Mus229296838	ProperStrand	1	1	-inf
chr15	85818232	85818312	protein_coding	Celsr1	intron	ENSMUSG00000016028	ProperStrand	3	chr15	86220506	86220596	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	NonProperStrand	4	1	-18.9366
chr15	23668030	23668118	LTR	IAPEY2_LTR	ERVK	chr15IAPEY2_LTR23667775	NonProperStrand	1	chr15	23668168	23668248	LTR	IAPEy-int	ERVK	chr15IAPEy-int23668127	NonProperStrand	1	1	-inf
chr13	51406091	51406181	LTR	MER74A	ERVL	chr13MER74A51405957	NonProperStrand	1	chr13	51406214	51406294	LTR	ORR1D2	MaLR	chr13ORR1D251406176	ProperStrand	1	1	-inf
chr17	39846771	39846800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	93274200	93274294	protein_coding	Cd82	intron	ENSMUSG00000027215	ProperStrand	1	1	-inf
chr2	130276254	130276288	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr1	163779870	163779887	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	9	1	-7.8496
chr1	180873843	180873933	SINE	ID_B1	B4	chr1ID_B1180873728	NonProperStrand	2	chr1	180874026	180874107	SINE	MIRc	MIR	chr1MIRc180873974	ProperStrand	2	2	-inf
chr11	109011795	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	57413920	57413938	protein_coding	Pkib	intron	ENSMUSG00000019876	ProperStrand	3	1	-6.2761
chr4	132352895	132352961	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr3	62159318	62159346	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	1	-7.3635
chr7	110538708	110538788	LTR	ORR1A1-int	MaLR	chr7ORR1A1-int110537293	ProperStrand	1	chr7	110539077	110539167	LTR	ORR1A1	MaLR	chr7ORR1A1110538845	ProperStrand	1	1	-inf
chr13	97190564	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr9	108463120	108463137	protein_coding	Impdh2	intron	ENSMUSG00000062867	ProperStrand	1	1	-inf
chr10	43621422	43621502	protein_coding	Qrsl1	utr5	ENSMUSG00000019863	NonProperStrand	2	chr10	43621662	43621752	protein_coding	Rtn4ip1	utr5	ENSMUSG00000019864	ProperStrand	1	1	-inf
chr2	130276236	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr9	15313830	15315282	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	4	-4.9453
chr15	34440789	34440923	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr13	97190550	97190627	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	5	-5.6144
chrX	48121921	48121939	LINE	L1Md_F2	L1	chrXL1Md_F248119935	NonProperStrand	1	chr12	112738812	112738917	LTR	MERVK26-int	ERVK	chr12MERVK26-int112738526	ProperStrand	1	1	-inf
chr15	5492690	5492780	LINE	L1Md_F2	L1	chr15L1Md_F25492713	NonProperStrand	1	chr15	5492456	5492536	LINE	L1_Mur2	L1	chr15L1_Mur25492241	ProperStrand	1	1	-inf
chr1	90344646	90344736	LTR	MMETn-int	ERVK	chr1MMETn-int90344414	NonProperStrand	1	chr1	90344325	90344405	LTR	MTD	MaLR	chr1MTD90344112	ProperStrand	1	1	-inf
chr11	3412456	3412546	LTR	MTA_Mm	MaLR	chr11MTA_Mm3412412	ProperStrand	1	chr11	3411919	3411999	SINE	PB1D7	Alu	chr11PB1D73411914	NonProperStrand	1	1	-inf
chr8	83663085	83663923	LINE	L1Md_F3	L1	chr8L1Md_F383662486	ProperStrand	1	chr8	83663941	83664147	LINE	L1Md_F3	L1	chr8L1Md_F383663873	ProperStrand	1	1	-inf
chr15	59041811	59041901	LTR	MTE2b	MaLR	chr15MTE2b59041831	NonProperStrand	1	chr17	39846662	39846741	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	1	-inf
chr18	33795243	33795295	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr13	44869592	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-4.3731
chr12	58761969	58761985	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	chr13	97190548	97190628	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.6017
chr2	90395157	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	125028726	125028742	protein_coding	Eif2b1	exon	ENSMUSG00000029388	NonProperStrand	1	1	-inf
chr5	146261164	146261189	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	117349657	117349674	protein_coding	Gm11733	utr3	ENSMUSG00000069588	ProperStrand	1	1	-inf
chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr6	125121721	125121758	protein_coding	Ncapd2	exon	ENSMUSG00000038252	NonProperStrand	10	1	-5.2066
chr12	73351938	73352028	protein_coding	Rtn1	intron	ENSMUSG00000021087	NonProperStrand	3	chr12	79911509	79911589	protein_coding	Mpp5	intron	ENSMUSG00000021112	NonProperStrand	2	1	-20.7434
chr9	123461811	123462174	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr2	90395135	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	30	-9.5535
chr16	36931638	36931876	protein_coding	Golgb1	intron	ENSMUSG00000034243	ProperStrand	2	chr13	44869929	44870019	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chr17	39847513	39848055	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	4	-7.0497
chr17	39848248	39848378	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr4	124510073	124510093	protein_coding	Mtf1	intron	ENSMUSG00000028890	ProperStrand	2	2	-inf
chr10	31614359	31614439	LINE	L1_Mur1	L1	chr10L1_Mur131611619	NonProperStrand	1	chr10	31614693	31614783	LINE	L1_Mus1	L1	chr10L1_Mus131614496	NonProperStrand	1	1	-inf
chr3	151264446	151264536	LTR	IAPEY3_LTR	ERVK	chr3IAPEY3_LTR151264396	ProperStrand	1	chr3	151264771	151264851	LTR	MTD	MaLR	chr3MTD151264703	NonProperStrand	1	1	-inf
chr13	112578216	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr16	30308257	30308274	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	4	1	-8.5381
chr10	80553437	80553527	protein_coding-noncoding	Creb3l3	utr3	ENSMUSG00000035041	NonProperStrand	1	chr10	80553078	80553158	protein_coding	Creb3l3	intron	ENSMUSG00000035041	NonProperStrand	1	1	-inf
chr1	127769859	127769877	protein_coding	Lypd1	utr3	ENSMUSG00000026344	ProperStrand	2	chr3	62159125	62159141	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	1	-17.0606
chr13	119178230	119178310	LTR	MLT1A0	MaLR	chr13MLT1A0119178249	ProperStrand	1	chr13	119177867	119177957	LTR	RLTR14	ERV1	chr13RLTR14119177662	NonProperStrand	1	1	-inf
chr1	172886238	172886318	LINE	L1_Mus2	L1	chr1L1_Mus2172884940	ProperStrand	1	chr1	172886726	172886816	LTR	MLT1L	MaLR	chr1MLT1L172886736	ProperStrand	1	1	-inf
chr4	41365869	41365959	protein_coding	Kif24	intron	ENSMUSG00000028438	ProperStrand	3	chr4	44789751	44789831	protein_coding	Zcchc7	intron	ENSMUSG00000035649	ProperStrand	2	1	-20.7434
chr6	33936297	33936338	lincRNA	Gm13853	intron	ENSMUSG00000087441	NonProperStrand	2	chr4	145036951	145037041	processed_transcript	Gm13227	.	ENSMUSG00000085101	NonProperStrand	1	1	-inf
chr17	39847183	39847221	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	141020486	141021666	protein_coding	Zbtb17	exon	ENSMUSG00000006215	ProperStrand	1	1	-inf
chr1	161035400	161035418	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chrX	163927179	163927196	protein_coding	Frmpd4	intron	ENSMUSG00000049176	NonProperStrand	6	1	-12.8738
chr16	78698723	78698813	LINE	L1_Mur3	L1	chr16L1_Mur378698571	NonProperStrand	1	chr16	78699036	78699116	Simple_repeat	(CACAC)n	Simple_repeat	chr16(CACAC)n78698896	NonProperStrand	1	1	-inf
chr13	54190154	54190181	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	chr8	13876096	13876122	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-6.5597
chr17	39846779	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	110692047	110692169	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	5	-7.1817
mmu-miR-6240	1	25	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr13	54190149	54190181	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	1	-6.4169
chr3	95187237	95187317	SINE	B2_Mm1t	B2	chr3B2_Mm1t95187251	NonProperStrand	4	chr3	95187108	95187199	SINE	B3	B2	chr3B395187043	NonProperStrand	4	4	-inf
chr3	86140629	86140667	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	14	chr4	132309952	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-5.2943
chr9	120130889	120131037	LTR	ORR1E	MaLR	chr9ORR1E120130701	NonProperStrand	1	chr13	97190554	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr15	23668342	23668361	LTR	IAPEy-int	ERVK	chr15IAPEy-int23668127	ProperStrand	1	chr2	90395139	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr16	35981624	35981644	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-3.8283
chr4	94555767	94555785	LINE	L1_Mur3	L1	chr4L1_Mur394555762	ProperStrand	4	chr9	123461957	123461983	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-6.4942
chr8	126944851	126944941	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	chr7	127527912	127527993	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-6.9951
chr6	123972404	123972484	LINE	Lx5	L1	chr6Lx5123972406	ProperStrand	1	chr6	123972159	123972249	LTR	RMER13A	ERVK	chr6RMER13A123972184	ProperStrand	1	1	-inf
chr10	122565802	122565892	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr4	62173285	62173365	protein_coding	Alad	intron	ENSMUSG00000028393	ProperStrand	1	1	-inf
chr10	53590001	53590081	LINE	Lx8	L1	chr10Lx853589965	NonProperStrand	1	chr10	53590136	53590226	LINE	Lx8	L1	chr10Lx853590104	NonProperStrand	1	1	-inf
chr1	122357169	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr2	158356420	158356561	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	3	-9.5498
chr8	70895758	70895775	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr5	138239632	138239649	protein_coding	Zcwpw1	intron	ENSMUSG00000037108	ProperStrand	4	1	-9.4061
chr10	23785347	23785432	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr5	107905176	107907443	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	6	-10.6078
chr8	49624133	49624151	protein_coding	Odz3	intron	ENSMUSG00000031561	NonProperStrand	5	chr5	17776753	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	1	-15.1908
chr14	55540460	55540478	protein_coding	Efs	intron	ENSMUSG00000022203	ProperStrand	8	chr7	97875696	97875715	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	26	1	-12.7350
chr18	73556421	73556501	LINE	L1MB4	L1	chr18L1MB473556139	ProperStrand	1	chr18	73555989	73556079	SINE	B1_Mm	Alu	chr18B1_Mm73555993	NonProperStrand	1	1	-inf
chr9	62926880	62926970	DNA	Charlie16a	MER1_type	chr9Charlie16a62926901	ProperStrand	1	chr9	62927315	62927395	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n62927270	NonProperStrand	1	1	-inf
chr17	24719702	24719809	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	2	-6.9726
chr17	39846352	39847152	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	120130414	120130509	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	12	-6.6553
chr17	39847503	39847892	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	43583119	43583185	protein_coding-noncoding	Gba2	utr3	ENSMUSG00000028467	NonProperStrand	1	1	-inf
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr2	168011157	168011180	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	1	-7.9552
chr16	23110767	23110799	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr8	95746112	95746147	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-5.2349
chr17	39847813	39847913	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	34372417	34372451	protein_coding	Mapkap1	intron	ENSMUSG00000038696	NonProperStrand	2	1	-6.4812
chr10	19364486	19364576	LTR	RMER13A	ERVK	chr10RMER13A19363898	ProperStrand	1	chr10	19364618	19364698	protein_coding	9230106D20Rik	utr5	ENSMUSG00000042940	NonProperStrand	1	1	-inf
chrX	9134045	9134135	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int9133807	ProperStrand	1	chrX	9133715	9133795	LTR	MTA_Mm	MaLR	chrXMTA_Mm9133411	ProperStrand	1	1	-inf
chr2	148442516	148442596	LTR	IAPEz-int	ERVK	chr2IAPEz-int148442399	NonProperStrand	1	chr2	148442113	148442203	LTR	IAPLTR1a_Mm	ERVK	chr2IAPLTR1a_Mm148442065	NonProperStrand	1	1	-inf
chr6	53124357	53124437	LINE	L1Md_F3	L1	chr6L1Md_F353124219	ProperStrand	1	chr6	53124092	53124182	LINE	MusHAL1	L1	chr6MusHAL153123538	ProperStrand	1	1	-inf
chr2	90395157	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr8	94098364	94098381	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	10	1	-5.2066
chr10	32596058	32596075	LINE	Lx	L1	chr10Lx32594200	ProperStrand	1	chr17	39847864	39847902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr11	109011798	109011841	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	112216278	112216294	LTR	RMER19A	ERVK	chr5RMER19A112216167	NonProperStrand	1	1	-inf
chr11	29545155	29545235	lincRNA	Gm12092	intron	ENSMUSG00000084850	NonProperStrand	1	chr12	8940994	8941084	protein_coding	Laptm4a	intron	ENSMUSG00000020585	NonProperStrand	1	1	-inf
chr11	47456063	47456153	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	14	chr8	61325468	61325548	protein_coding	Galntl6	intron	ENSMUSG00000061864	NonProperStrand	11	1	-13.3326
chr12	80397772	80398858	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	6	chr12	80340183	80340246	protein_coding	Zfyve26	intron	ENSMUSG00000066440	NonProperStrand	1	1	-inf
chr4	132352442	132352528	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr17	12919699	12919718	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	1	-4.2927
chr11	6528085	6528151	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr16	23110456	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-6.4775
chr4	126240822	126241800	protein_coding-noncoding	Clspn	utr5	ENSMUSG00000042489	NonProperStrand	1	chr13	54190152	54190185	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	1	-inf
chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr9	121255034	121255053	protein_coding	Trak1	intron	ENSMUSG00000032536	ProperStrand	5	1	-5.9940
chrX	36633354	36633434	LINE	Lx9	L1	chrXLx936633194	NonProperStrand	1	chrX	36633681	36633771	LINE	Lx9	L1	chrXLx936633619	NonProperStrand	1	1	-inf
chr11	46363915	46365981	lincRNA	Gm12171	exon	ENSMUSG00000086981	NonProperStrand	2	chr13	97190554	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-9.9068
chr18	35557158	35557176	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr17	81838405	81838427	protein_coding	Slc8a1	intron	ENSMUSG00000054640	ProperStrand	5	1	-9.7564
chr2	81708453	81708543	LTR	RMER13A	ERVK	chr2RMER13A81707901	NonProperStrand	1	chr2	81708718	81708798	SINE	B4A	B4	chr2B4A81708683	NonProperStrand	1	1	-inf
chr3	25141234	25141314	LTR	MYSERV-int	ERVK	chr3MYSERV-int25140527	NonProperStrand	1	chr3	25141438	25141528	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int25141460	NonProperStrand	1	1	-inf
chr13	21426783	21426863	LINE	L1Md_T	L1	chr13L1Md_T21421655	ProperStrand	2	chr13	21427004	21427094	LINE	L1Md_T	L1	chr13L1Md_T21426977	ProperStrand	1	1	-inf
chr13	37989537	37989584	protein_coding	Rreb1	intron	ENSMUSG00000039087	NonProperStrand	2	chr7	28351535	28351579	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-14.2727
chr11	69667931	69667976	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	13	1	-6.5284
chr11	6528084	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr16	23111390	23111421	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	2	-9.8456
chr15	101443198	101443278	LTR	MurERV4_19-int	ERVK	chr15MurERV4_19-int101443130	NonProperStrand	1	chr15	101443023	101443113	LTR	RMER19B	ERVK	chr15RMER19B101442881	NonProperStrand	1	1	-inf
chr5	114851972	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr2	5379240	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	47	-inf
chr2	82395702	82395782	LINE	L1_Mus4	L1	chr2L1_Mus482393021	NonProperStrand	1	chr2	83579945	83580035	lincRNA	Gm13684	intron	ENSMUSG00000085335	ProperStrand	1	1	-inf
chr2	22744879	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr5	121205007	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-3.7549
chr19	38259800	38259880	LINE	L1VL4	L1	chr19L1VL438259529	ProperStrand	1	chr11	76572418	76572508	protein_coding	Gosr1	intron	ENSMUSG00000010392	ProperStrand	4	1	-inf
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr9	110281289	110281316	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-4.1902
chrX	38022729	38022819	LINE	L1_Mm	L1	chrXL1_Mm38022581	ProperStrand	1	chrX	38022416	38022496	LINE	Lx6	L1	chrXLx638021751	NonProperStrand	1	1	-inf
chr7	4740128	4740149	protein_coding	2210411K11Rik	intron	ENSMUSG00000030431	ProperStrand	6	chr9	15315223	15315267	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-8.0943
chr4	43492975	43493025	SINE	B3	B2	chr4B343492960	NonProperStrand	40	chr4	132309940	132310029	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-3.2765
chr4	87291906	87291996	SINE	B3A	B2	chr4B3A87291905	NonProperStrand	1	chr4	87292076	87292156	Simple_repeat	(TAGA)n	Simple_repeat	chr4(TAGA)n87291993	NonProperStrand	1	1	-inf
chr18	88829560	88829640	SINE	B4A	B4	chr18B4A88829499	ProperStrand	1	chr18	88829712	88829802	SINE	B4A	B4	chr18B4A88829610	ProperStrand	1	1	-inf
chr13	44869594	44869680	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr16	30308259	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	4	1	-8.1902
chr1	36531405	36531423	protein_coding	Cnnm4	intron	ENSMUSG00000037408	NonProperStrand	3	chr2	5379278	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-8.3841
chr14	75847958	75847986	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr9	110281308	110281341	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-5.0613
chr11	55482777	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr2	130276315	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	1	-3.2350
chr14	54469397	54469414	LINE	L1ME2	L1	chr14L1ME254469365	ProperStrand	2	chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	1	-15.4042
chr17	54376840	54376930	LTR	RMER17C-int	ERVK	chr17RMER17C-int54376354	ProperStrand	1	chr17	54377188	54377268	LTR	RMER17C-int	ERVK	chr17RMER17C-int54377058	ProperStrand	1	1	-inf
chr2	94102758	94102779	lincRNA	E530001K10Rik	intron	ENSMUSG00000075020	NonProperStrand	1	chr4	132309940	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr12	5553626	5553706	LINE	L1M2	L1	chr12L1M25553578	NonProperStrand	1	chr12	5553836	5553926	LTR	MTEa	MaLR	chr12MTEa5553708	NonProperStrand	1	1	-inf
chr13	44869574	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr16	23110824	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	19	-10.1619
chr11	77178743	77178823	protein_coding	Ssh2	intron	ENSMUSG00000037926	NonProperStrand	7	chr11	77179243	77179333	protein_coding	Ssh2	intron	ENSMUSG00000037926	ProperStrand	2	1	-18.7768
chr10	34760323	34760403	LINE	L1Md_F2	L1	chr10L1Md_F234760213	ProperStrand	1	chr10	34760106	34760196	LINE	L1_Rod	L1	chr10L1_Rod34759872	NonProperStrand	1	1	-inf
chr2	158393079	158393159	SINE	ID_B1	B4	chr2ID_B1158393097	NonProperStrand	1	chr2	158393366	158393456	SINE	MIR	MIR	chr2MIR158393364	NonProperStrand	1	1	-inf
chr15	77326087	77326177	SINE	B1_Mm	Alu	chr15B1_Mm77326034	ProperStrand	1	chr15	58094695	58094775	lincRNA	Gm15943	intron	ENSMUSG00000086801	ProperStrand	8	1	-inf
chr17	50420139	50420159	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr17	56017703	56017898	protein_coding	Zfp119a	intron	ENSMUSG00000057835	ProperStrand	1	1	-inf
chr17	39846453	39846490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	18288625	18288649	protein_coding	Dgcr8	intron	ENSMUSG00000022718	ProperStrand	3	1	-5.9338
chr9	72607398	72607488	SINE	B1_Mur4	Alu	chr9B1_Mur472607400	ProperStrand	1	chr9	72607628	72607708	SINE	B1_Mus1	Alu	chr9B1_Mus172607634	NonProperStrand	1	1	-inf
chr7	100629868	100629886	LINE	Lx7	L1	chr7Lx7100629435	ProperStrand	7	chr16	89898182	89898247	protein_coding	Tiam1	exon	ENSMUSG00000002489	ProperStrand	6	1	-16.0980
chr11	32173599	32173689	Simple_repeat	(CAGAG)n	Simple_repeat	chr11(CAGAG)n32173612	NonProperStrand	1	chr10	79894979	79895059	protein_coding	Tcf3	intron	ENSMUSG00000020167	ProperStrand	2	1	-inf
chr3	123507947	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr13	54190150	54190185	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	2	-5.0662
chr11	101759639	101759719	LTR	ORR1C2	MaLR	chr11ORR1C2101759612	ProperStrand	1	chr11	101759143	101759234	SINE	B4	B4	chr11B4101759088	ProperStrand	1	1	-inf
chr2	30305743	30305833	SINE	B3	B2	chr2B330305668	NonProperStrand	1	chr2	30306173	30306253	SINE	B3A	B2	chr2B3A30306121	NonProperStrand	1	1	-inf
chr17	84699682	84699700	protein_coding	Thada	intron	ENSMUSG00000024251	ProperStrand	7	chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-11.4271
chr8	63821170	63821250	protein_coding	Sh3rf1	intron	ENSMUSG00000031642	NonProperStrand	1	chr8	63759075	63759165	protein_coding	Sh3rf1	intron	ENSMUSG00000031642	ProperStrand	2	1	-inf
chr13	97484959	97485049	LTR	MLT1E	MaLR	chr13MLT1E97484839	ProperStrand	2	chr13	97485147	97485227	LTR	RLTR45	ERVK	chr13RLTR4597485142	ProperStrand	1	1	-inf
chr17	39846594	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	65196571	65196615	protein_coding	Pdcd7	intron	ENSMUSG00000041837	NonProperStrand	4	1	-5.2608
chr11	109011790	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	29400504	29400524	protein_coding	C330005M16Rik	intron	ENSMUSG00000037469	ProperStrand	2	1	-7.3577
chr3	90369934	90370024	LINE	Lx8	L1	chr3Lx890369918	ProperStrand	1	chr3	90370232	90370312	SINE	B1F2	Alu	chr3B1F290370244	ProperStrand	1	1	-inf
chr5	142773276	142773356	SINE	B2_Mm1t	B2	chr5B2_Mm1t142773207	ProperStrand	1	chr5	142773556	142773646	SINE	B4A	B4	chr5B4A142773569	NonProperStrand	1	1	-inf
chr9	110281285	110281345	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	chr13	97190550	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	3	-5.9709
chr17	39846759	39847157	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	3	-3.2297
chr3	96176402	96176436	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr4	132113873	132113891	SINE	B2_Mm2	B2	chr4B2_Mm2132113747	NonProperStrand	1	1	-inf
chr2	22326362	22326442	protein_coding	Myo3a	intron	ENSMUSG00000025716	NonProperStrand	5	chr2	22345326	22345416	protein_coding	Myo3a	intron	ENSMUSG00000025716	ProperStrand	3	2	-inf
mmu-miR-6240	1	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr10	105238504	105238521	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-6.9164
chr17	39847341	39847651	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr6	3201455	3201567	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	20	5	-inf
chr10	79828287	79828367	LTR	RLTR15	ERVK	chr10RLTR1579828283	NonProperStrand	1	chr10	79828153	79828243	protein_coding	Plk5	utr3	ENSMUSG00000035486	NonProperStrand	1	1	-inf
chr1	89862173	89862195	protein_coding	Usp40	intron	ENSMUSG00000005501	ProperStrand	3	chr4	132309940	132310029	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-8.6506
chr17	39847471	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr3	89379433	89379449	protein_coding	Kcnn3	intron	ENSMUSG00000000794	NonProperStrand	9	2	-5.4691
chr4	96854696	96854776	LINE	Lx5	L1	chr4Lx596854176	ProperStrand	1	chr4	96855173	96855263	LINE	Lx5	L1	chr4Lx596855136	ProperStrand	1	1	-inf
chr11	109011748	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	71088072	71088092	LINE	L1_Mm	L1	chrXL1_Mm71088026	ProperStrand	1	1	-inf
chr1	58643303	58643383	protein_coding	Ndufb3	utr5	ENSMUSG00000026032	NonProperStrand	1	chr1	58642756	58642846	protein_coding	Fam126b	intron	ENSMUSG00000038174	ProperStrand	3	1	-inf
chr15	75797362	75797414	Other	RMER1A	Other	chr15RMER1A75797362	NonProperStrand	1	chr5	65537502	65566005	protein_coding	Klhl5	intron	ENSMUSG00000054920	ProperStrand	1	1	-inf
chr11	109011748	109011770	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	22670838	22670855	protein_coding	Bbs9	intron	ENSMUSG00000035919	NonProperStrand	4	1	-5.5999
chr5	146261279	146261303	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-3.5105
chr1	176094102	176094122	LINE	L1Md_F2	L1	chr1L1Md_F2176093751	NonProperStrand	1	chr2	90395156	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr17	39847428	39847520	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	20684152	20684177	protein_coding	Eif4g1	exon	ENSMUSG00000045983	ProperStrand	2	1	-6.4812
chr11	94162148	94162168	protein_coding	Luc7l3	intron	ENSMUSG00000020863	ProperStrand	3	chr19	8888596	8888628	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-9.8520
chr3	104778548	104778628	LTR	IAPLTR1_Mm	ERVK	chr3IAPLTR1_Mm104778469	ProperStrand	1	chr3	104778339	104778429	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int104777971	NonProperStrand	1	1	-inf
chr10	23785349	23785399	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr16	24984418	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	1	-4.6855
chr11	19928498	19928598	Other	RMER1C	Other	chr11RMER1C19928488	ProperStrand	1	chr11	19952841	19952905	SINE	B1_Mur3	Alu	chr11B1_Mur319952838	NonProperStrand	1	1	-inf
chr17	39845866	39845927	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chr17	24719675	24719770	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-3.0149
chr11	17233130	17233220	LINE	L1M2	L1	chr11L1M217233053	NonProperStrand	1	chr11	17232856	17232936	LTR	RMER17C	ERVK	chr11RMER17C17232760	NonProperStrand	1	1	-inf
chr18	85698192	85698214	LINE	Lx8	L1	chr18Lx885698131	NonProperStrand	5	chr17	39847611	39847648	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-4.2576
chr1	161035400	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr9	120130468	120130558	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-6.1469
chr9	11083953	11084033	LINE	L1Md_F2	L1	chr9L1Md_F211083881	ProperStrand	1	chr9	11083710	11083800	LTR	MYSERV6-int	ERVK	chr9MYSERV6-int11083701	NonProperStrand	1	1	-inf
chr2	90395157	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	23069276	23069458	protein_coding	4931423N10Rik	intron	ENSMUSG00000026774	NonProperStrand	2	1	-8.9527
chr6	41912855	41912935	LINE	L1_Mur2	L1	chr6L1_Mur241911847	ProperStrand	1	chr6	41912994	41913084	Simple_repeat	(GA)n	Simple_repeat	chr6(GA)n41913000	ProperStrand	1	1	-inf
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	chr16	23110839	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.5768
chr11	106501242	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr16	23110417	23110884	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	7	-6.3060
chr19	50913352	50913432	LINE	L1Md_F2	L1	chr19L1Md_F250913082	ProperStrand	1	chr7	74689904	74689994	protein_coding	Lrrc28	intron	ENSMUSG00000030556	NonProperStrand	1	1	-inf
chr17	39847476	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	59555144	59555162	protein_coding	Crybg3	exon	ENSMUSG00000022723	NonProperStrand	2	1	-6.4812
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	28351578	28351633	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	2	-3.3451
chr1	12814489	12814569	protein_coding	Sulf1	intron	ENSMUSG00000016918	NonProperStrand	3	chr1	177908880	177908970	protein_coding	B020018G12Rik	exon	ENSMUSG00000078184	ProperStrand	1	1	-inf
chr13	95330641	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr15	34440792	34440825	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-3.4635
chr10	23785399	23785430	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr8	61763214	61763232	LINE	Lx8	L1	chr8Lx861762759	ProperStrand	3	1	-9.2859
chr11	65495599	65495689	LINE	L1MB2	L1	chr11L1MB265495296	ProperStrand	1	chr11	65495782	65495862	SINE	B3	B2	chr11B365495772	ProperStrand	1	1	-inf
chr5	114851993	114852014	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr3	62159318	62159347	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	1	-6.0726
chr5	146261157	146261198	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr17	12919624	12919718	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	56	2	-4.9353
chr12	70937904	70937920	protein_coding	Map4k5	intron	ENSMUSG00000034761	NonProperStrand	4	chr11	113901594	113901611	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	1	-13.2530
chr3	95873627	95873717	LTR	RLTR13D6	ERVK	chr3RLTR13D695873549	NonProperStrand	1	chr3	95873473	95873553	SINE	B1_Mus1	Alu	chr3B1_Mus195873404	ProperStrand	1	1	-inf
chr17	25261728	25261828	protein_coding	Ptx4	exon	ENSMUSG00000044172	NonProperStrand	1	chr16	23110837	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr3	14507051	14507141	LINE	L1_Mus2	L1	chr3L1_Mus214506713	ProperStrand	1	chr3	14507236	14507316	LINE	L1_Mus2	L1	chr3L1_Mus214507188	NonProperStrand	1	1	-inf
chr1	43037931	43038021	LTR	MT2A	ERVL	chr1MT2A43037935	NonProperStrand	1	chr1	43037810	43037890	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n43037791	ProperStrand	1	1	-inf
chrX	12039200	12039280	SINE	B3A	B2	chrXB3A12039211	ProperStrand	1	chrX	12039100	12039190	SINE	PB1D9	Alu	chrXPB1D912039111	ProperStrand	1	1	-inf
chr1	105626196	105626286	LINE	L1Md_F2	L1	chr1L1Md_F2105626153	ProperStrand	1	chr3	31738394	31738474	LTR	MTA_Mm	MaLR	chr3MTA_Mm31738382	ProperStrand	1	1	-inf
chr12	11091995	11092011	LINE	Lx8	L1	chr12Lx811091971	ProperStrand	3	chr8	126944902	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-11.4045
chr4	43492783	43492853	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	NonProperStrand	11	chr15	64033620	64033710	protein_coding	Asap1	intron	ENSMUSG00000022377	NonProperStrand	7	1	-14.7985
chr17	12919676	12919706	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	chr2	32963283	32963362	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-4.0047
chr17	39847078	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr17	24720771	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	9	-4.6041
chr5	111755083	111755163	LTR	MERVL_2A-int	ERVL	chr5MERVL_2A-int111755095	ProperStrand	5	chr5	111755230	111755321	LTR	RMER10A	ERVL	chr5RMER10A111755213	ProperStrand	5	5	-inf
chr17	39847851	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	67321941	67322973	protein_coding	Tln2	intron	ENSMUSG00000052698	ProperStrand	5	1	-4.2576
chr11	109011791	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	4091765	4091785	protein_coding	Tbc1d10a	intron	ENSMUSG00000034412	NonProperStrand	2	1	-7.3577
chr11	58041882	58041972	SINE	B1_Mus2	Alu	chr11B1_Mus258041807	ProperStrand	1	chr11	58041643	58041723	SINE	B2_Mm2	B2	chr11B2_Mm258041528	NonProperStrand	1	1	-inf
chr3	84210341	84259327	Simple_repeat	(GA)n	Simple_repeat	chr3(GA)n84210315	ProperStrand	2	chr5	107907344	107907392	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-12.5150
chr18	35553383	35553401	protein_coding	Sil1	intron	ENSMUSG00000024357	ProperStrand	10	chr11	106056954	106056976	protein_coding	Strada	intron	ENSMUSG00000069631	NonProperStrand	2	1	-18.0359
chr19	24942235	24942267	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr11	94327348	94327369	protein_coding	Cacna1g	intron	ENSMUSG00000020866	ProperStrand	3	1	-15.6102
chrX	87238361	87238412	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chrX	4899374	4899402	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	1	-7.9714
chr12	32619361	32619380	protein_coding	Cog5	intron	ENSMUSG00000035933	ProperStrand	8	chr19	8888597	8888675	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-7.6323
chr11	100371076	100371094	protein_coding	Acly	intron	ENSMUSG00000020917	NonProperStrand	2	chr13	97190547	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-9.9068
chr16	4458149	4458229	LINE	L1MB7	L1	chr16L1MB74458030	ProperStrand	1	chr16	4457860	4457950	SINE	B1_Mur2	Alu	chr16B1_Mur24457871	ProperStrand	1	1	-inf
chr8	70895778	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr12	112974699	112974717	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	1	-6.5709
chr7	110046431	110046465	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr9	38085720	38085737	LTR	ORR1D1	MaLR	chr9ORR1D138085704	ProperStrand	2	1	-13.5996
chr5	7266300	7266390	LINE	L1_Mur3	L1	chr5L1_Mur37266053	ProperStrand	1	chr5	7267023	7267103	LINE	L1_Mus4	L1	chr5L1_Mus47266505	ProperStrand	1	1	-inf
chr17	39846955	39846996	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	116319549	116319566	protein_coding	Gm239	intron	ENSMUSG00000034057	ProperStrand	5	1	-4.7701
chr8	70895758	70895809	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr1	131573998	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-3.7354
chr18	57547098	57547178	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	8	chr2	40498650	40498740	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-13.4878
chr12	68793863	68793943	LINE	Lx3C	L1	chr12Lx3C68793675	NonProperStrand	1	chr12	68794319	68794407	LINE	Lx3C	L1	chr12Lx3C68794344	NonProperStrand	1	1	-inf
chr11	55482706	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr11	109011745	109011863	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	9	-8.9006
chr17	34906383	34906473	LTR	MER57C2	ERV1	chr17MER57C234906307	ProperStrand	3	chr17	34906199	34906279	LTR	RLTR13D6	ERVK	chr17RLTR13D634906039	ProperStrand	3	3	-inf
chr6	132104086	132104176	LINE	L1VL2	L1	chr6L1VL2132103924	NonProperStrand	1	chr6	132103853	132103933	LTR	ORR1A1	MaLR	chr6ORR1A1132103580	NonProperStrand	1	1	-inf
chr1	97713783	97713863	LINE	Lx9	L1	chr1Lx997713716	ProperStrand	5	chr1	182185117	182185207	protein_coding	Psen2	intron	ENSMUSG00000010609	ProperStrand	5	5	-inf
chr17	39847148	39847212	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	134613266	134613323	protein_coding	Nfasc	intron	ENSMUSG00000026442	NonProperStrand	4	1	-6.8874
chr1	93420467	93420485	protein_coding	Traf3ip1	intron	ENSMUSG00000034292	ProperStrand	5	chr9	15313801	15313830	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-8.4968
chr5	110653700	110653718	protein_coding	Golga3	utr3	ENSMUSG00000029502	ProperStrand	3	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-9.1493
chr16	23111314	23111343	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	NonProperStrand	2	chr2	5379278	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-9.4768
chr5	146261129	146261195	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr1	63179007	63179084	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	1	-4.4889
chr11	77607459	77607477	protein_coding	Myo18a	intron	ENSMUSG00000000631	NonProperStrand	2	chr7	109520231	109520252	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-10.7680
chr16	23110392	23110453	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	130172936	130172955	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	13	1	-4.7116
chr7	110046436	110046499	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr8	70895817	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-3.1520
chr6	90436448	90436528	protein_coding-noncoding	Aldh1l1	utr5	ENSMUSG00000030088	ProperStrand	1	chr6	90436602	90436692	protein_coding	Aldh1l1	intron	ENSMUSG00000030088	ProperStrand	3	1	-inf
chrX	4899374	4899409	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr3	130833356	130833372	protein_coding	Lef1	intron	ENSMUSG00000027985	ProperStrand	2	1	-16.3142
chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	6	chr13	97190582	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-7.2176
chr5	36019213	36019305	protein_coding	Htra3	intron	ENSMUSG00000029096	ProperStrand	1	chr15	83149731	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	6	1	-inf
chr17	39846766	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr19	4328011	4328030	protein_coding	Kdm2a	intron	ENSMUSG00000054611	ProperStrand	2	1	-7.0123
chrX	52548643	52548733	LINE	L1_Mm	L1	chrXL1_Mm52548601	NonProperStrand	1	chrX	52548474	52548554	Simple_repeat	(TCTA)n	Simple_repeat	chrX(TCTA)n52548436	ProperStrand	1	1	-inf
chr12	78350924	78351129	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr9	123461898	123462157	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	7	-19.4179
chr2	50864506	50864596	LINE	Lx7	L1	chr2Lx750864290	ProperStrand	1	chr2	50864674	50864754	LINE	Lx7	L1	chr2Lx750864680	ProperStrand	1	1	-inf
chr17	39846353	39846420	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr2	164253156	164253173	protein_coding	Sdc4	intron	ENSMUSG00000017009	ProperStrand	1	1	-inf
chr10	23785346	23785445	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	69667860	69669777	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	6	-5.6453
chr2	73012886	73012911	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	17	chr5	121205007	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-6.1434
chr13	53571795	53571815	SINE	MIR	MIR	chr13MIR53571797	ProperStrand	1	chr6	71882621	71882692	protein_coding	Polr1a	intron	ENSMUSG00000049553	NonProperStrand	3	1	-inf
chr17	39848100	39848147	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr19	4153358	4153438	protein_coding	Coro1b	exon	ENSMUSG00000024835	ProperStrand	1	1	-inf
chr7	145231481	145231563	LINE	Lx7	L1	chr7Lx7145230825	ProperStrand	1	chr8	117820791	117820807	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	23	1	-inf
chr2	6838414	6838432	protein_coding	Celf2	intron	ENSMUSG00000002107	NonProperStrand	6	chr9	123461828	123461850	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-5.5993
chr9	123462121	123462142	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr11	32426724	32426756	protein_coding	Efcab9	intron	ENSMUSG00000044056	NonProperStrand	2	1	-8.2644
chr4	123291341	123291416	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr5	107907352	107907442	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-5.0773
chr13	19466313	19466330	protein_coding	Stard3nl	intron	ENSMUSG00000003062	NonProperStrand	2	chr14	63462656	63462675	protein_coding	Wdfy2	intron	ENSMUSG00000014547	ProperStrand	7	1	-18.7795
chr7	19504010	19504100	SINE	B3	B2	chr7B319503947	NonProperStrand	1	chr7	19504242	19504322	SINE	B4	B4	chr7B419504190	NonProperStrand	1	1	-inf
chr19	28911321	28911411	protein_coding	Slc1a1	intron	ENSMUSG00000024935	NonProperStrand	2	chr19	32252485	32252565	protein_coding	Sgms1	intron	ENSMUSG00000040451	NonProperStrand	8	1	-18.5073
chr19	21188986	21189066	LTR	ORR1E	MaLR	chr19ORR1E21188800	ProperStrand	1	chr19	21177994	21178084	LTR	RLTR28	ERVL	chr19RLTR2821177792	NonProperStrand	1	1	-inf
chr13	95330603	95330631	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr7	122768917	122768935	protein_coding	Sox6	intron	ENSMUSG00000051910	ProperStrand	16	1	-8.4694
chr19	5162167	5162183	protein_coding	Pacs1	intron	ENSMUSG00000024855	ProperStrand	3	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-12.4791
chr10	23785349	23785399	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	57785564	57785667	lincRNA	Gm12249	intron	ENSMUSG00000086666	NonProperStrand	2	1	-10.3808
chr10	23785347	23785398	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr1	63179036	63179132	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	1	-4.9249
chr11	109011650	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	23111379	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	4	-4.6904
chr5	65312410	65312426	LINE	L1_Mus3	L1	chr5L1_Mus365312165	NonProperStrand	2	chr9	15315187	15315281	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-10.7903
chr15	34371855	34371935	protein_coding-noncoding	Rpl30	utr3	ENSMUSG00000058600	ProperStrand	1	chr3	31206310	31206400	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	5	1	-inf
chr11	13872559	13872649	LINE	L1_Mur3	L1	chr11L1_Mur313872580	ProperStrand	1	chr11	13872387	13872467	LINE	Lx8	L1	chr11Lx813872314	NonProperStrand	1	1	-inf
chr15	85528784	85528874	LTR	RLTR15	ERVK	chr15RLTR1585528728	ProperStrand	1	chr15	85528987	85529067	LTR	RLTR15	ERVK	chr15RLTR1585528970	ProperStrand	1	1	-inf
chr18	24473310	24473400	LTR	LTR48	ERV1	chr18LTR4824473216	ProperStrand	1	chr18	23960711	23960795	protein_coding	Mapre2	intron	ENSMUSG00000024277	ProperStrand	3	1	-inf
chr5	146261018	146261037	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr19	5052580	5052597	protein_coding	Rin1	exon	ENSMUSG00000024883	NonProperStrand	1	1	-inf
chr1	34713911	34714001	LTR	MTE2b	MaLR	chr1MTE2b34713833	ProperStrand	1	chr1	34714137	34714217	SINE	MIRb	MIR	chr1MIRb34714068	ProperStrand	1	1	-inf
chr13	97190551	97190613	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr5	17776754	17776796	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	1	-5.6017
chr1	101377779	101377797	LINE	L1_Mus2	L1	chr1L1_Mus2101375522	ProperStrand	1	chr9	15313839	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr11	69667833	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	10	-6.0739
chr8	34067772	34067862	DNA	MER2	MER2_type	chr8MER234067735	NonProperStrand	1	chr8	34067950	34068030	SINE	B3A	B2	chr8B3A34067898	ProperStrand	1	1	-inf
chr11	113901594	113901611	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	chr1	91366488	91366504	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	1	-10.3947
chr17	39847774	39847844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	168661968	168662058	SINE	B2_Mm2	B2	chr2B2_Mm2168661993	ProperStrand	1	1	-inf
chr7	141448812	141448903	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr4	120553008	120553957	protein_coding	Rims3	intron	ENSMUSG00000032890	ProperStrand	10	1	-10.7073
chr1	4654137	4654156	LINE	L1_Mm	L1	chr1L1_Mm4654034	ProperStrand	1	chr17	39846966	39846990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr17	24719680	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr16	24681832	24681852	protein_coding	Lpp	exon	ENSMUSG00000033306	ProperStrand	15	1	-7.6772
chr16	22057082	22057162	LINE	Lx9	L1	chr16Lx922057049	ProperStrand	1	chr16	22057266	22057356	SINE	B1_Mus2	Alu	chr16B1_Mus222057222	ProperStrand	1	1	-inf
chrX	37082981	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr1	176180196	176180215	protein_coding	Olfr419	exon	ENSMUSG00000050788	NonProperStrand	1	1	-inf
chr17	39847611	39847637	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr3	103914540	103914558	protein_coding	Magi3	intron	ENSMUSG00000052539	ProperStrand	6	1	-3.8783
chr17	39846727	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	31097173	31097562	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	4	1	-5.2608
chr4	148958486	148958566	SINE	ID_B1	B4	chr4ID_B1148958486	ProperStrand	1	chr4	148958383	148958473	SINE	RSINE1	B4	chr4RSINE1148958321	ProperStrand	1	1	-inf
chr15	8231184	8231200	LTR	RLTR1C	ERV1	chr15RLTR1C8230887	NonProperStrand	2	chr17	39847576	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-6.4812
chr3	60964942	60965022	SINE	B1_Mm	Alu	chr3B1_Mm60964901	NonProperStrand	1	chr3	60964830	60964920	Unknown	YREP_Mm	Unknown	chr3YREP_Mm60964734	ProperStrand	1	1	-inf
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr11	108087099	108087118	protein_coding	Prkca	intron	ENSMUSG00000050965	ProperStrand	6	1	-6.2750
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr17	24720821	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-4.4228
chr11	109011747	109011768	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	123103877	123103894	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	8	1	-4.1268
chr11	109011796	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr14	39335272	39335290	protein_coding	Nrg3	intron	ENSMUSG00000041014	NonProperStrand	9	1	-3.8922
chr17	39846754	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr7	82813094	82813111	protein_coding	Akap13	intron	ENSMUSG00000066406	NonProperStrand	3	1	-5.9338
chr11	17017902	17017920	LINE	Lx4B	L1	chr11Lx4B17017464	NonProperStrand	1	chr15	34440793	34440910	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-inf
chr9	120130414	120130560	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr16	23110820	23110917	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	8	-8.0589
chr19	34612575	34612591	LINE	L1Md_F	L1	chr19L1Md_F34610344	ProperStrand	1	chr11	6528078	6528168	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	1	-inf
chr11	109011829	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr14	118430757	118430774	protein_coding	Dct	intron	ENSMUSG00000022129	ProperStrand	2	1	-7.3577
chr11	109011747	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	20700679	20700769	protein_coding	Eif3g	intron	ENSMUSG00000070319	NonProperStrand	1	1	-inf
chr14	75847904	75848035	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr17	24720771	24720907	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	3	-6.6403
chr17	39847215	39847252	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr18	63078741	63078757	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	3	1	-7.5717
chr17	39847442	39847458	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr11	69669691	69669722	protein_coding	Tnk1	intron	ENSMUSG00000001583	NonProperStrand	1	1	-inf
chr2	171858556	171858636	DNA	MER5A1	MER1_type	chr2MER5A1171858560	ProperStrand	1	chr2	171858448	171858538	SINE	B3	B2	chr2B3171858343	NonProperStrand	1	1	-inf
chr17	39846732	39846869	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	70332731	70454646	protein_coding	Psd3	intron	ENSMUSG00000030465	ProperStrand	19	2	-4.0023
chr5	146261057	146261092	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr17	70963678	70963768	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	1	-3.3954
chr11	113565731	113565747	protein_coding	Cpsf4l	intron	ENSMUSG00000018727	ProperStrand	2	chr13	44869940	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chr3	80545492	80545509	protein_coding	Gria2	intron	ENSMUSG00000033981	NonProperStrand	2	chr2	69509251	69509376	protein_coding	Kbtbd10	exon	ENSMUSG00000075307	ProperStrand	1	1	-inf
chr1	9747785	9747918	lincRNA	1700034P13Rik	intron	ENSMUSG00000085661	NonProperStrand	1	chr16	23110392	23110418	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-inf
chr17	39847994	39848043	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr10	36974898	36974915	SINE	B1_Mus1	Alu	chr10B1_Mus136974809	NonProperStrand	1	1	-inf
chr2	5379271	5379344	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr16	23110821	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	25	-13.0236
chr8	59549168	59549248	LINE	L1Md_T	L1	chr8L1Md_T59545311	ProperStrand	1	chr8	59549469	59549559	LINE	L1Md_T	L1	chr8L1Md_T59549318	ProperStrand	1	1	-inf
chr8	126944901	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	chr2	158358356	158358423	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-3.5870
chr17	59357949	59358039	LINE	L1Md_T	L1	chr17L1Md_T59354835	ProperStrand	1	chr2	130130371	130130451	protein_coding	Ebf4	intron	ENSMUSG00000053552	ProperStrand	1	1	-inf
chrX	47333193	47333211	LINE	L1Md_A	L1	chrXL1Md_A47331998	NonProperStrand	1	chr5	121205007	121205088	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-inf
chr10	118052207	118052225	LTR	RLTR28	ERVL	chr10RLTR28118051832	ProperStrand	3	chr16	23110837	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr17	39846566	39846646	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	28582897	28582987	protein_coding	Ak8	intron	ENSMUSG00000026807	NonProperStrand	5	1	-4.7701
chr17	39846727	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	34150838	34150856	antisense	C79798	.	ENSMUSG00000084908	ProperStrand	4	1	-5.2608
chr6	42345124	42345204	SINE	B3A	B2	chr6B3A42345023	NonProperStrand	1	chr6	42345255	42345345	SINE	PB1D10	Alu	chr6PB1D1042345220	NonProperStrand	1	1	-inf
chr17	35011455	35011494	protein_coding	C2	intron	ENSMUSG00000024371	NonProperStrand	6	chr12	80441402	80441427	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	10	1	-15.3358
chr10	23785349	23785446	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	6528051	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	3	-5.6671
chr2	171491025	171491105	LINE	L1Md_F2	L1	chr2L1Md_F2171490939	ProperStrand	1	chr2	171490515	171490605	SINE	B3A	B2	chr2B3A171490485	NonProperStrand	1	1	-inf
chr16	25822779	25822869	protein_coding	Trp63	intron	ENSMUSG00000022510	ProperStrand	4	chr16	29413883	29413963	protein_coding	Atp13a4	intron	ENSMUSG00000038094	ProperStrand	2	1	-19.9239
chr2	5379305	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr11	116843219	116843235	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-4.1504
chr3	133781909	133781999	lincRNA	Gm2078	intron	ENSMUSG00000091186	NonProperStrand	5	chr12	67665681	67665761	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-13.1024
chr4	100441821	100441901	SINE	B3	B2	chr4B3100441765	ProperStrand	1	chr4	100440846	100440936	Simple_repeat	(GAA)n	Simple_repeat	chr4(GAA)n100440819	NonProperStrand	1	1	-inf
chr3	153912126	153912200	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	16	chr10	75504944	75505044	protein_coding	Zfp280b	utr3	ENSMUSG00000049764	NonProperStrand	2	2	-inf
chr16	75761305	75764955	protein_coding	Hspa13	intron	ENSMUSG00000032932	NonProperStrand	1	chr16	23110835	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr4	81445037	81445056	LINE	L1_Mm	L1	chr4L1_Mm81444938	NonProperStrand	11	chr2	158356428	158356504	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-8.7725
chr8	64187652	64187742	protein_coding-noncoding	Palld	utr3	ENSMUSG00000058056	ProperStrand	1	chr8	64187847	64187927	protein_coding	Palld	intron	ENSMUSG00000058056	ProperStrand	3	1	-inf
chr4	21870397	21871446	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	NonProperStrand	4	chr13	97190548	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.1245
chr13	75046029	75046119	LINE	L1_Mm	L1	chr13L1_Mm75045938	NonProperStrand	1	chr13	75046394	75046474	LINE	Lx5	L1	chr13Lx575046140	ProperStrand	1	1	-inf
chr17	39240393	39240483	LINE	L1Md_F2	L1	chr17L1Md_F239240401	NonProperStrand	1	chr17	39240123	39240203	LINE	Lx7	L1	chr17Lx739240132	ProperStrand	1	1	-inf
chr8	108948131	108948147	lincRNA	Gm17245	exon	ENSMUSG00000067626	ProperStrand	4	chr8	70895757	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-9.4061
chr2	105680463	105680481	protein_coding	Elp4	intron	ENSMUSG00000027167	ProperStrand	4	chr16	11144059	11144149	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-13.1165
chr6	36375828	36375918	protein_coding	Chrm2	intron	ENSMUSG00000045613	NonProperStrand	2	chr6	64210803	64210883	protein_coding	Grid2	intron	ENSMUSG00000071424	NonProperStrand	11	1	-17.8406
chr2	32277374	32277464	protein_coding-noncoding	Slc25a25	utr3	ENSMUSG00000026819	NonProperStrand	1	chr2	32277159	32277239	protein_coding	Slc25a25	intron	ENSMUSG00000026819	NonProperStrand	2	1	-inf
chr19	6911541	6911630	protein_coding	Rps6ka4	intron	ENSMUSG00000024952	ProperStrand	1	chr8	13876111	13876172	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-inf
chr11	5071068	5071147	LTR	MLT1A1	MaLR	chr11MLT1A15071061	NonProperStrand	2	chr11	5070674	5071036	LTR	MLT1D	MaLR	chr11MLT1D5070675	ProperStrand	1	1	-inf
chr11	96935380	96935470	SINE	B2_Mm2	B2	chr11B2_Mm296935313	NonProperStrand	1	chr11	96711408	96711488	protein_coding	Copz2	intron	ENSMUSG00000018672	ProperStrand	1	1	-inf
chr11	109011794	109011834	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	28563047	28563063	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int28561999	NonProperStrand	1	1	-inf
chr17	39847672	39847695	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr14	65076342	65076358	SINE	B1_Mur1	Alu	chr14B1_Mur165076217	ProperStrand	2	1	-6.4812
chr14	57881316	57881406	LTR	ORR1D2	MaLR	chr14ORR1D257881250	NonProperStrand	1	chr14	57881580	57881660	LTR	ORR1E	MaLR	chr14ORR1E57881588	ProperStrand	1	1	-inf
chr9	43720996	43721076	LINE	L1MC1	L1	chr9L1MC143720771	ProperStrand	1	chr9	43721331	43721421	LTR	MTEa	MaLR	chr9MTEa43721170	ProperStrand	1	1	-inf
chr17	24720821	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr7	141984949	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-5.4666
chr10	5246392	5246478	protein_coding	Syne1	intron	ENSMUSG00000019769	NonProperStrand	5	chr13	112578229	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-8.0311
chr5	35171094	35171114	protein_coding	Htt	intron	ENSMUSG00000029104	NonProperStrand	1	chr8	70895758	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-inf
chr14	112495913	112495934	LINE	L1Md_T	L1	chr14L1Md_T112495662	ProperStrand	4	chr5	146261240	146261287	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	NonProperStrand	1	1	-inf
chr10	117567859	117567939	LINE	L1_Mus3	L1	chr10L1_Mus3117567850	ProperStrand	1	chr10	117568061	117568151	SINE	B2_Mm2	B2	chr10B2_Mm2117568025	ProperStrand	1	1	-inf
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr8	25716848	25716866	protein_coding	Adam18	intron	ENSMUSG00000031552	ProperStrand	4	1	-7.1761
chr11	94632110	94634553	LTR	MT2A	ERVL	chr11MT2A94631937	NonProperStrand	1	chr17	39847903	39847979	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr9	21929162	21929252	SINE	B1_Mur3	Alu	chr9B1_Mur321929118	ProperStrand	1	chr9	21929280	21929360	SINE	ID_B1	B4	chr9ID_B121929277	ProperStrand	1	1	-inf
chr14	32191977	32192052	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr16	34357389	34360825	protein_coding	Kalrn	intron	ENSMUSG00000061751	NonProperStrand	10	1	-12.3409
chr2	30311162	30311252	SINE	B1_Mur1	Alu	chr2B1_Mur130311147	ProperStrand	1	chr2	30310954	30311034	Simple_repeat	(TTTC)n	Simple_repeat	chr2(TTTC)n30310872	ProperStrand	1	1	-inf
chr3	159431486	159431503	LINE	L1Md_T	L1	chr3L1Md_T159430044	ProperStrand	1	chr9	15315201	15315282	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr6	122576162	122576242	SINE	B1_Mm	Alu	chr6B1_Mm122576182	ProperStrand	1	chr6	122576026	122576116	SINE	B1_Mus1	Alu	chr6B1_Mus1122576031	ProperStrand	1	1	-inf
mmu-miR-6240	1	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr11	119280760	119280784	protein_coding	Rnf213	intron	ENSMUSG00000070327	ProperStrand	5	1	-11.3455
chr10	17124521	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr4	12686342	12686382	LINE	Lx3_Mus	L1	chr4Lx3_Mus12686344	ProperStrand	1	1	-inf
chr17	39847684	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	140635387	140635548	protein_coding	Mad1l1	intron	ENSMUSG00000029554	ProperStrand	4	1	-4.7422
chr8	12253942	12254022	LTR	MLT1E1	MaLR	chr8MLT1E112253840	ProperStrand	1	chr8	12254122	12254212	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n12254105	ProperStrand	1	1	-inf
chrX	23041720	23041800	LINE	Lx8	L1	chrXLx823041700	ProperStrand	1	chrX	23042096	23042186	Simple_repeat	(GAAA)n	Simple_repeat	chrX(GAAA)n23041990	ProperStrand	1	1	-inf
chr11	109011682	109011711	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	95820915	95820931	LTR	IAPEz-int	ERVK	chr4IAPEz-int95820631	ProperStrand	2	1	-7.3577
chr11	95005641	95005659	protein_coding-noncoding	Dlx4	utr3	ENSMUSG00000020871	NonProperStrand	1	chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chrX	4136308	4136358	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	chr6	99395936	99395953	protein_coding	Eif4e3	intron	ENSMUSG00000030068	NonProperStrand	9	1	-12.9204
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	129789616	129789673	Simple_repeat	(CGGGG)n	Simple_repeat	chr5(CGGGG)n129789606	ProperStrand	10	1	-3.6858
chr10	91118385	91118408	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-3.9321
chr10	30975869	30975959	Low_complexity	GA-rich	Low_complexity	chr10GA-rich30975851	ProperStrand	1	chr10	30975739	30975819	Other	RMER1B	Other	chr10RMER1B30975304	ProperStrand	1	1	-inf
chr16	23111652	23111701	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr1	71643024	71643124	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	17	1	-4.1852
chr12	99645564	99645663	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr2	32963368	32963416	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-4.4631
chr4	120553008	120553957	protein_coding	Rims3	intron	ENSMUSG00000032890	ProperStrand	10	chr5	92066578	92068351	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	17	1	-13.1315
chr4	145831111	145831127	LTR	RLTR6-int	ERV1	chr4RLTR6-int145825958	ProperStrand	1	chr2	90395157	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr2	59231142	59231232	LTR	BGLII_B	ERVK	chr2BGLII_B59230931	ProperStrand	1	chr2	59231516	59231596	LTR	ORR1D2	MaLR	chr2ORR1D259231452	NonProperStrand	1	1	-inf
chr9	123462079	123462107	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr6	125121765	125121806	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	10	1	-4.5433
chr11	109012015	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr17	70963685	70963775	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	1	-6.3225
chr7	100629863	100629884	LINE	Lx7	L1	chr7Lx7100629435	ProperStrand	7	chr17	39848099	39848132	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-7.7277
chr17	39846847	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr14	32191852	32192051	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	2	-3.2703
chr2	25953300	25953390	protein_coding	Nacc2	intron	ENSMUSG00000026932	ProperStrand	4	chr2	25786883	25786963	protein_coding	Camsap1	intron	ENSMUSG00000026933	NonProperStrand	2	1	-19.9239
chr17	39847563	39847597	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	89129807	89130602	LTR	RMER5	ERV1	chr18RMER589129605	NonProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr2	120042232	120042248	protein_coding	Pla2g4e	intron	ENSMUSG00000050211	NonProperStrand	8	1	-6.6901
chr11	109011656	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	132352894	132352982	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	9	-3.9880
chr17	39846290	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	90395129	90395193	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	43	-6.7748
chr15	75748013	75748034	protein_coding	Pycrl	intron	ENSMUSG00000022571	NonProperStrand	8	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-13.4878
chr7	29446484	29446574	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr9	123462102	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-3.0341
chr11	5083244	5083334	SINE	ID_B1	B4	chr11ID_B15083169	NonProperStrand	5	chr11	5082689	5082769	SINE	RSINE1	B4	chr11RSINE15082684	NonProperStrand	5	5	-inf
chr7	90083997	90084077	LINE	L1M7	L1	chr7L1M790084004	ProperStrand	1	chr7	90083896	90083986	SINE	B3A	B2	chr7B3A90083781	ProperStrand	1	1	-inf
chr12	111114115	111114195	LTR	ORR1D2	MaLR	chr12ORR1D2111114107	NonProperStrand	1	chr12	111113955	111114045	Simple_repeat	(CAGAGA)n	Simple_repeat	chr12(CAGAGA)n111113976	NonProperStrand	1	1	-inf
chr16	18240785	18240819	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr2	5379294	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.8320
chr5	127431952	127432032	LINE	L1MC	L1	chr5L1MC127431669	ProperStrand	2	chr5	127432132	127432222	LINE	Lx5	L1	chr5Lx5127432045	ProperStrand	1	1	-inf
chr9	123462122	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	1	-3.7490
chr17	39847177	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	58179323	58179378	protein_coding	Klhl3	intron	ENSMUSG00000014164	ProperStrand	8	1	-5.3820
chrX	79051738	79051828	LINE	L1_Mur3	L1	chrXL1_Mur379051700	NonProperStrand	1	chr1	16824499	16824579	LTR	RLTR45-int	ERVK	chr1RLTR45-int16824384	ProperStrand	1	1	-inf
chr18	61580393	61580433	SINE	B3	B2	chr18B361580303	NonProperStrand	1	chr7	109520159	109520194	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-inf
chr10	81216007	81216097	SINE	B1_Mus1	Alu	chr10B1_Mus181215965	ProperStrand	1	chr10	81291539	81291619	SINE	B2_Mm2	B2	chr10B2_Mm281291548	ProperStrand	1	1	-inf
chr17	39846571	39846653	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	46767533	46767640	protein_coding	C78339	intron	ENSMUSG00000069237	NonProperStrand	10	2	-5.8900
chr10	23785349	23785426	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr3	123507996	123508021	LTR	RMER19C	ERVK	chr3RMER19C123507664	ProperStrand	2	1	-10.3808
chr11	109011819	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	86138790	86138855	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	14	1	-3.0480
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr5	129789654	129789673	Simple_repeat	(CGGGG)n	Simple_repeat	chr5(CGGGG)n129789606	ProperStrand	10	1	-11.5998
chr13	53858724	53858741	LTR	MLT1A0	MaLR	chr13MLT1A053858662	NonProperStrand	3	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-8.9012
chr7	13324348	13324438	LTR	MTE-int	MaLR	chr7MTE-int13324108	ProperStrand	1	chr7	15055787	15055867	SINE	ID_B1	B4	chr7ID_B115055790	ProperStrand	1	1	-inf
chr18	57354822	57354844	protein_coding	Megf10	intron	ENSMUSG00000024593	NonProperStrand	7	chr4	132310256	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-6.7251
chr19	32898545	32898625	protein_coding	Pten	utr3	ENSMUSG00000013663	ProperStrand	3	chr19	32727316	32727406	protein_coding	Papss2	intron	ENSMUSG00000024899	ProperStrand	1	1	-inf
chr5	146261039	146261101	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr10	80417216	80417320	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	6	1	-7.2355
chr11	109011744	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	161035404	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	3	-4.6815
chr13	99093893	99093982	antisense	Gm9828	.	ENSMUSG00000048603	NonProperStrand	1	chr13	92299404	92299484	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	ProperStrand	9	1	-inf
chr11	97781662	97781761	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr17	24720786	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	5	-10.3022
chr7	81817531	81817611	LINE	L1M5	L1	chr7L1M581817459	ProperStrand	1	chr7	81817707	81817797	LTR	MTEb	MaLR	chr7MTEb81817649	NonProperStrand	1	1	-inf
chr19	24942235	24942267	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr4	132352447	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	1	-6.4139
chr9	21418370	21419328	SINE	B1_Mus2	Alu	chr9B1_Mus221418351	ProperStrand	1	chr9	21417385	21418330	SINE	ID_B1	B4	chr9ID_B121417930	NonProperStrand	1	1	-inf
chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	chr2	32963283	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-5.4135
chr4	11334523	11334603	LINE	Lx8	L1	chr4Lx811334125	NonProperStrand	1	chr4	11334689	11334779	LTR	MER21B	ERV1	chr4MER21B11334653	ProperStrand	1	1	-inf
chr10	11497010	11497028	Other	RMER1A	Other	chr10RMER1A11495989	NonProperStrand	1	chr7	109520140	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-inf
chr17	39846415	39846450	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr16	11144084	11144174	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-6.0946
chr7	97566849	97566939	LTR	MMETn-int	ERVK	chr7MMETn-int97562089	NonProperStrand	1	chr7	97566968	97567048	LTR	RLTRETN_Mm	ERVK	chr7RLTRETN_Mm97566957	NonProperStrand	1	1	-inf
chr17	39846953	39846999	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	61347252	61347274	LTR	MERVL-int	ERVL	chr17MERVL-int61345498	ProperStrand	1	1	-inf
chr11	6620372	6620438	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr5	17776747	17776788	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	1	-11.1076
chr11	109011746	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	114851975	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	14	-3.3319
chr15	34440790	34440869	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr1	132504428	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	13	1	-7.5544
chr19	3457003	3459412	protein_coding	Ppp6r3	exon	ENSMUSG00000024908	ProperStrand	4	chr16	23110837	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr6	87794720	87794737	protein_coding	Cnbp	intron	ENSMUSG00000030057	ProperStrand	1	chr9	15313802	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr3	4519959	4520039	LINE	Lx3_Mus	L1	chr3Lx3_Mus4519969	ProperStrand	1	chr3	5204492	5204582	lincRNA	2700069I18Rik	intron	ENSMUSG00000086224	ProperStrand	1	1	-inf
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	125711862	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	4	-11.2990
chr2	4766191	4766281	Low_complexity	GA-rich	Low_complexity	chr2GA-rich4766172	NonProperStrand	1	chr2	4766463	4766543	SINE	B1_Mus1	Alu	chr2B1_Mus14766448	NonProperStrand	1	1	-inf
chr17	39847282	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr3	87168419	87168519	protein_coding	Cd5l	intron	ENSMUSG00000015854	NonProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr9	105173584	105173608	protein_coding	Nek11	intron	ENSMUSG00000035032	ProperStrand	6	2	-12.0152
chr11	109011821	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	91620258	91620275	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	11	1	-3.5018
chr17	39848474	39848638	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr6	3201470	3201546	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	3	-9.2562
chr4	132352442	132352528	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr8	70895758	70895877	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	6	-10.0145
chr10	118052206	118052224	LTR	RLTR28	ERVL	chr10RLTR28118051832	ProperStrand	3	chr17	39847891	39847910	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-5.4090
chr10	91118511	91118533	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr9	15315218	15315318	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-4.4466
chr13	97190544	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr19	8888533	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	7	-5.9430
chr3	9434889	9434905	lincRNA	C030034L19Rik	exon	ENSMUSG00000085362	ProperStrand	9	chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-5.4552
chr11	105922648	105922664	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	chr13	44869928	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.6839
chr7	36550708	36550798	LINE	Lx8	L1	chr7Lx836550612	ProperStrand	1	chr7	36551099	36551179	SINE	B3	B2	chr7B336550972	ProperStrand	1	1	-inf
chr2	158896629	158896709	LTR	MTE2a	MaLR	chr2MTE2a158896632	NonProperStrand	1	chr2	158896436	158896526	SINE	B3	B2	chr2B3158896437	NonProperStrand	1	1	-inf
chr1	10146607	10146687	protein_coding-noncoding	Arfgef1	utr3	ENSMUSG00000067851	ProperStrand	2	chr1	10146272	10146362	protein_coding	Arfgef1	intron	ENSMUSG00000067851	ProperStrand	3	1	-20.8207
chr13	8767044	8767062	protein_coding	Adarb2	utr3	ENSMUSG00000052551	ProperStrand	8	chr2	167499849	167499866	protein_coding	Tmem189	intron	ENSMUSG00000090213	NonProperStrand	1	1	-inf
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr13	24801293	24801310	protein_coding	Fam65b	intron	ENSMUSG00000036006	ProperStrand	2	1	-15.1399
chr11	69667884	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr18	35557081	35557203	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	3	-4.5797
chr4	132352465	132352528	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr16	23110456	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-4.8920
chrX	116520347	116520365	LINE	L1M2	L1	chrXL1M2116520294	NonProperStrand	1	chr4	43534418	43534464	protein_coding	Tpm2	intron	ENSMUSG00000028464	ProperStrand	3	1	-inf
chr6	3201486	3201559	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr8	70895758	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	2	-5.0393
chr1	6867191	6867281	LINE	L1VL2	L1	chr1L1VL26866923	NonProperStrand	1	chr1	6867450	6867530	LTR	MT2A	ERVL	chr1MT2A6867333	NonProperStrand	1	1	-inf
chr10	76257088	76257104	protein_coding	Pcbp3	intron	ENSMUSG00000001120	NonProperStrand	3	chr4	106119076	106119094	protein_coding	Pcsk9	intron	ENSMUSG00000044254	ProperStrand	2	1	-20.7434
chr4	135027842	135027932	protein_coding	Nipal3	intron	ENSMUSG00000028803	NonProperStrand	2	chr4	134445945	134446025	protein_coding	Rhd	intron	ENSMUSG00000028825	NonProperStrand	1	1	-inf
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	mmu-miR-3068-5p	0	19	miRNA	mmu-miR-3068-5p	.	mmu-miR-3068-5p	ProperStrand	1	1	-inf
chr17	35162603	35162655	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr2	158359853	158359916	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-4.4289
chr16	23110392	23111672	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	130276235	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	6	-3.5533
chr3	123507936	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr5	107905209	107907476	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	6	-9.2501
chr11	109011656	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	123461812	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	45	-4.6722
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr17	27121628	27121648	protein_coding	Ggnbp1	intron	ENSMUSG00000048731	ProperStrand	1	1	-inf
chr11	59076322	59076338	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	7	chr13	44869616	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.9510
chrX	87238363	87238409	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr16	18240746	18240836	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	1	-7.7233
chr4	121128879	121128969	LINE	Lx3_Mus	L1	chr4Lx3_Mus121128807	ProperStrand	1	chr4	121129058	121129138	Simple_repeat	(TTTC)n	Simple_repeat	chr4(TTTC)n121129058	NonProperStrand	1	1	-inf
chr7	101548810	101548900	LINE	L1_Mus3	L1	chr7L1_Mus3101548740	NonProperStrand	1	chr2	24193318	24193398	protein_coding	Il1rn	utr5	ENSMUSG00000026981	NonProperStrand	2	1	-inf
chr2	5379283	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr19	9016886	9016952	protein_coding	Mta2	intron	ENSMUSG00000071646	ProperStrand	1	1	-inf
chr5	146261078	146261112	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr10	40941373	40941424	protein_coding	Fig4	intron	ENSMUSG00000038417	NonProperStrand	2	1	-9.9250
chr8	116034239	116034329	LINE	L1M3	L1	chr8L1M3116034057	NonProperStrand	1	chr8	116034573	116034653	SINE	B3A	B2	chr8B3A116034568	ProperStrand	1	1	-inf
chr1	161035399	161035457	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr11	6528051	6528151	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	1	-6.9104
chr18	36918337	36918417	SINE	ID4_	ID	chr18ID4_36918352	NonProperStrand	1	chr18	36918709	36918799	SINE	PB1D9	Alu	chr18PB1D936918735	NonProperStrand	1	1	-inf
chrX	87238374	87238412	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr9	45431297	45431397	protein_coding	Dscaml1	intron	ENSMUSG00000032087	ProperStrand	5	1	-11.1883
chr10	59898543	59898587	protein_coding	Cdh23	intron	ENSMUSG00000012819	NonProperStrand	15	chr18	35554568	35554598	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-7.4210
chr3	106455580	106455660	LINE	L1Md_F2	L1	chr3L1Md_F2106455337	NonProperStrand	1	chr3	106308139	106308229	protein_coding	Cept1	exon	ENSMUSG00000040774	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr9	58489030	58489106	protein_coding	Nptn	intron	ENSMUSG00000032336	ProperStrand	2	1	-9.9953
chr2	148129145	148129235	LINE	L1Md_F3	L1	chr2L1Md_F3148129103	NonProperStrand	1	chr2	147808696	147808776	lincRNA	9030622O22Rik	intron	ENSMUSG00000086141	ProperStrand	3	1	-inf
chr17	39848099	39848150	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr11	106066806	106066837	protein_coding-noncoding	Ccdc47	utr3	ENSMUSG00000078622	NonProperStrand	1	1	-inf
chr2	173227271	173227363	LTR	MTE-int	MaLR	chr2MTE-int173227268	NonProperStrand	1	chr2	173227017	173227097	LTR	ORR1A2	MaLR	chr2ORR1A2173226943	ProperStrand	1	1	-inf
chr11	109011793	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	74226959	74227270	LINE	L1Md_F2	L1	chrXL1Md_F274226898	NonProperStrand	1	1	-inf
chr11	103939084	103939174	LTR	MTC	MaLR	chr11MTC103939046	NonProperStrand	1	chr11	103938708	103938788	SINE	MIR3	MIR	chr11MIR3103938709	ProperStrand	1	1	-inf
chr17	39847302	39847331	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr18	84450968	84450985	protein_coding	Zfp407	intron	ENSMUSG00000048410	NonProperStrand	5	1	-11.9399
chr9	123461965	123461996	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr9	110082564	110082654	protein_coding	Smarcc1	intron	ENSMUSG00000032481	ProperStrand	9	1	-4.7558
chr16	7581825	7581905	LINE	L1Md_F2	L1	chr16L1Md_F27576407	NonProperStrand	1	chr8	43121157	43121247	LINE	L1Md_T	L1	chr8L1Md_T43116722	NonProperStrand	1	1	-inf
chr4	132352957	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr5	121704726	121704744	protein_coding	Gm15800	intron	ENSMUSG00000042744	NonProperStrand	6	1	-9.4276
chr9	54274786	54274876	protein_coding	Dmxl2	intron	ENSMUSG00000041268	NonProperStrand	2	chr9	54259923	54260003	protein_coding	Dmxl2	intron	ENSMUSG00000041268	ProperStrand	2	1	-21.5566
chr12	87437790	87437817	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	1	-7.4956
chr2	18983311	18983401	LTR	ORR1E	MaLR	chr2ORR1E18983045	NonProperStrand	1	chr2	18983614	18983694	SINE	B1F2	Alu	chr2B1F218983606	NonProperStrand	1	1	-inf
chr5	65830146	65830226	LTR	RMER10B	ERVL	chr5RMER10B65830135	NonProperStrand	1	chr5	65830359	65830450	LTR	RMER10B	ERVL	chr5RMER10B65830374	NonProperStrand	1	1	-inf
chr10	91395887	91395906	LINE	L1Md_A	L1	chr10L1Md_A91391547	NonProperStrand	1	chr17	39846003	39846103	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	1	-inf
chr17	39846353	39846371	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	95050861	95050896	SINE	B2_Mm2	B2	chr4B2_Mm295050712	ProperStrand	1	1	-inf
chr7	110046440	110046476	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr2	32963316	32963363	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-3.1705
chr9	44410016	44410153	SINE	B1_Mur1	Alu	chr9B1_Mur144409992	NonProperStrand	1	chr15	81949632	81949696	protein_coding	Mei1	intron	ENSMUSG00000068117	NonProperStrand	6	1	-inf
chr10	17124519	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr8	70895758	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-6.3171
chr8	70895758	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr19	8888561	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	4	-4.8082
chr7	139063954	139063973	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	33	chr3	62159303	62159350	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	1	-10.7969
chr16	23111299	23111356	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr5	125133116	125133136	protein_coding	Atp6v0a2	intron	ENSMUSG00000038023	NonProperStrand	9	1	-5.4552
chr4	132352894	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr4	132309465	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	5	-5.7985
chr11	109011795	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	69453311	69453327	protein_coding	Fxr2	intron	ENSMUSG00000018765	NonProperStrand	6	1	-4.7173
chr17	39847956	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr12	46713826	46713848	Simple_repeat	(CA)n	Simple_repeat	chr12(CA)n46713805	NonProperStrand	1	1	-inf
chr16	22211706	22211786	LTR	MTC-int	MaLR	chr16MTC-int22211640	ProperStrand	1	chr16	22211951	22212040	SINE	B1_Mm	Alu	chr16B1_Mm22211911	ProperStrand	1	1	-inf
chr3	37481370	37481399	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	7	chr3	127038814	127038848	protein_coding	Ank2	intron	ENSMUSG00000032826	ProperStrand	5	1	-16.5037
chr14	59928605	59928685	LINE	L1Md_F2	L1	chr14L1Md_F259927167	ProperStrand	1	chr6	33364791	33364881	protein_coding	Exoc4	intron	ENSMUSG00000029763	NonProperStrand	13	1	-inf
chr5	114851974	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr13	44869602	44870028	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	9	-8.6121
mmu-miR-1291	9	26	miRNA	mmu-miR-1291	.	mmu-miR-1291	ProperStrand	12	chr17	24720801	24720831	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-6.8654
chr1	132249647	132249727	LINE	Lx9	L1	chr1Lx9132249613	ProperStrand	1	chr1	132249910	132250000	LTR	RLTR1B	ERV1	chr1RLTR1B132249871	NonProperStrand	1	1	-inf
chr11	109011748	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	75450671	75450689	protein_coding	Accn4	intron	ENSMUSG00000033007	NonProperStrand	1	1	-inf
chr9	102094266	102094356	protein_coding	Ephb1	intron	ENSMUSG00000032537	NonProperStrand	9	chr9	102779683	102779763	protein_coding	Ryk	intron	ENSMUSG00000032547	ProperStrand	5	1	-15.9633
chr8	92981896	92981913	LTR	MTD	MaLR	chr8MTD92981586	NonProperStrand	6	chr13	44869896	44869925	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.2830
chr15	45299243	45299264	LTR	RLTR9E	ERVK	chr15RLTR9E45299157	ProperStrand	3	chr9	15313803	15313829	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-9.6947
chr17	39847129	39847207	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr10	114788074	114788091	protein_coding	Tmem19	intron	ENSMUSG00000069520	NonProperStrand	1	1	-inf
chr9	21110540	21110620	protein_coding	Ap1m2	intron	ENSMUSG00000003309	NonProperStrand	1	chr10	69641769	69641859	protein_coding	Ccdc6	intron	ENSMUSG00000048701	NonProperStrand	2	1	-inf
chr17	39847677	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	56576416	56576437	protein_coding	Ptprs	intron	ENSMUSG00000013236	ProperStrand	2	1	-6.4812
chr3	96176360	96176387	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr5	134558819	134558835	LTR	ORR1B2	MaLR	chr5ORR1B2134558619	NonProperStrand	2	1	-15.9877
chr7	143197536	143197616	LINE	Lx3A	L1	chr7Lx3A143197488	NonProperStrand	1	chr7	142947864	142947954	LTR	MTD	MaLR	chr7MTD142947719	ProperStrand	1	1	-inf
chr5	146261154	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr5	150528294	150528387	protein_coding	B3galtl	intron	ENSMUSG00000051950	ProperStrand	2	1	-9.9250
chr2	168789868	168789948	LTR	RLTR19-int	ERVK	chr2RLTR19-int168789408	NonProperStrand	2	chr2	168790202	168790292	SINE	B2_Mm2	B2	chr2B2_Mm2168790174	ProperStrand	2	2	-inf
chr17	39846622	39846711	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr11	80138010	80138026	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	NonProperStrand	2	1	-12.9931
chr16	48413352	48413442	LINE	L1M5	L1	chr16L1M548413352	ProperStrand	1	chr16	48412978	48413058	LINE	L1Md_F2	L1	chr16L1Md_F248412927	NonProperStrand	1	1	-inf
chr7	74926775	74926865	LINE	L1MB7	L1	chr7L1MB774926314	ProperStrand	1	chr7	74927145	74927225	SINE	B3	B2	chr7B374927077	NonProperStrand	1	1	-inf
chr8	7171470	7171560	LINE	Lx5	L1	chr8Lx57171483	NonProperStrand	1	chr8	7171756	7171836	SINE	B1_Mus2	Alu	chr8B1_Mus27171744	ProperStrand	1	1	-inf
chr11	95773025	95773044	protein_coding	B4galnt2	intron	ENSMUSG00000013418	ProperStrand	1	chr2	158359833	158359931	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-inf
chr17	39848598	39848704	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr3	55449069	55449090	protein_coding	Nbea	intron	ENSMUSG00000027799	NonProperStrand	5	1	-9.8425
chr9	123462036	123462075	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr5	115697738	115697858	protein_coding	Rnf10	intron	ENSMUSG00000041740	ProperStrand	2	1	-8.2644
chr3	20566378	20566468	LINE	Lx2	L1	chr3Lx220564699	NonProperStrand	1	chr3	20465407	20465487	LINE	Lx7	L1	chr3Lx720465348	ProperStrand	1	1	-inf
chr4	50726553	50726633	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int50722851	NonProperStrand	1	chr4	50726925	50727015	LTR	MMERVK10C-int	ERVK	chr4MMERVK10C-int50726927	NonProperStrand	1	1	-inf
chr17	39846353	39846959	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	128123783	128128740	protein_coding	Rab5b	intron	ENSMUSG00000000711	NonProperStrand	4	2	-9.1554
chr11	99017068	99017127	LTR	RLTR25B	ERVK	chr11RLTR25B99017055	ProperStrand	18	chr17	39847508	39847710	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	3	-5.3783
chr17	35555235	35555352	LTR	RMER4A	ERVK	chr17RMER4A35555221	ProperStrand	1	chr4	132309507	132309544	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chrX	74344552	74344568	LINE	L1Md_F2	L1	chrXL1Md_F274343867	ProperStrand	4	chr12	19388165	19388182	SINE	B3	B2	chr12B319388035	NonProperStrand	5	1	-17.7431
chr10	23785346	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr14	75847912	75848034	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	4	-7.5836
chr6	10622992	10623081	LINE	L1Md_A	L1	chr6L1Md_A10622293	ProperStrand	1	chr6	10632781	10632861	LINE	L1_Mur2	L1	chr6L1_Mur210632494	ProperStrand	1	1	-inf
chr1	39548749	39548804	LINE	Lx5	L1	chr1Lx539548764	NonProperStrand	5	chr5	107905208	107905308	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-10.2163
chr1	93750450	93750468	LINE	L1MD1	L1	chr1L1MD193749946	ProperStrand	2	chr19	8888597	8888639	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr19	46761721	46761738	LTR	ORR1A2	MaLR	chr19ORR1A246761457	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr4	6214308	6214388	LTR	RLTR10-int	ERVK	chr4RLTR10-int6214179	NonProperStrand	1	chr4	6214425	6214515	LTR	RLTR10	ERVK	chr4RLTR106214449	NonProperStrand	1	1	-inf
chr6	112142737	112142827	LINE	Lx6	L1	chr6Lx6112142763	ProperStrand	1	chr6	112142591	112142671	LTR	IAPLTR2b	ERVK	chr6IAPLTR2b112142451	NonProperStrand	1	1	-inf
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr16	23110479	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	2	-4.4776
chr15	76656779	76656871	LINE	Lx7	L1	chr15Lx776655468	ProperStrand	1	chr5	146261155	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-inf
chrX	12655574	12655654	protein_coding	Usp9x	intron	ENSMUSG00000031010	ProperStrand	2	chr10	108188718	108188808	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	1	-16.9369
chr2	8179180	8179260	LINE	L1Md_F	L1	chr2L1Md_F8178789	NonProperStrand	1	chr2	8178663	8178753	LINE	L1_Mur2	L1	chr2L1_Mur28178050	ProperStrand	1	1	-inf
chr8	19084468	19084558	LINE	L1M2	L1	chr8L1M219084417	ProperStrand	1	chr8	19084698	19084778	LINE	L1Md_A	L1	chr8L1Md_A19084678	ProperStrand	1	1	-inf
chr3	80817375	80817455	DNA	RCHARR1	MER1_type	chr3RCHARR180817206	NonProperStrand	1	chr3	80817691	80817781	LTR	RLTR17	ERVK	chr3RLTR1780817558	NonProperStrand	1	1	-inf
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	144837173	144837263	Simple_repeat	(GAAA)n	Simple_repeat	chr5(GAAA)n144837071	ProperStrand	1	1	-inf
chr17	93827360	93827440	LINE	L1_Mus3	L1	chr17L1_Mus393825515	ProperStrand	1	chr17	80927156	80927246	protein_coding	Cdkl4	intron	ENSMUSG00000033966	NonProperStrand	2	1	-inf
chr10	23785346	23785446	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr8	95746099	95746148	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-3.2069
chr9	74281868	74281884	SINE	B1_Mur4	Alu	chr9B1_Mur474281772	NonProperStrand	2	chr12	71151403	71151493	protein_coding	Nin	intron	ENSMUSG00000021068	ProperStrand	3	1	-20.8207
chr10	127095090	127095107	protein_coding	Stat6	intron	ENSMUSG00000002147	ProperStrand	1	chr5	114851994	114852027	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-inf
chr1	71599622	71599646	SINE	PB1D10	Alu	chr1PB1D1071599627	ProperStrand	1	chr3	116489183	116489199	protein_coding	Agl	intron	ENSMUSG00000033400	ProperStrand	7	1	-inf
chr17	39847440	39847944	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr9	123461957	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	3	-17.1445
chr15	71794351	71794368	protein_coding	Col22a1	intron	ENSMUSG00000079022	NonProperStrand	5	chr16	23110894	23110929	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.3911
chr2	180960177	180960257	LTR	ORR1A3-int	MaLR	chr2ORR1A3-int180959776	ProperStrand	1	chr2	180333392	180333482	protein_coding	Col9a3	intron	ENSMUSG00000027570	ProperStrand	1	1	-inf
chr8	114892776	114892866	LINE	L1MC1	L1	chr8L1MC1114892699	NonProperStrand	1	chr8	114892613	114892693	SINE	B4A	B4	chr8B4A114892500	NonProperStrand	1	1	-inf
chr2	122372952	122373032	LTR	MMETn-int	ERVK	chr2MMETn-int122372882	NonProperStrand	1	chr2	122372750	122372840	LTR	RLTRETN_Mm	ERVK	chr2RLTRETN_Mm122372542	NonProperStrand	1	1	-inf
chr17	39846761	39846785	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	119530425	119530442	LTR	IAPEz-int	ERVK	chr1IAPEz-int119530207	NonProperStrand	1	1	-inf
chr18	46983070	46983160	LTR	ORR1A4	MaLR	chr18ORR1A446982868	NonProperStrand	1	chr18	46983295	46983375	LTR	ORR1B1	MaLR	chr18ORR1B146983307	NonProperStrand	1	1	-inf
chr7	30334576	30334593	LINE	L1Md_F2	L1	chr7L1Md_F230334212	NonProperStrand	2	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-17.6470
chr19	8723994	8724034	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr16	23110833	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-5.8493
chr12	21115800	21115890	protein_coding	Asap2	intron	ENSMUSG00000052632	NonProperStrand	5	chr12	24248193	24248273	pseudogene	Gm20474	.	ENSMUSG00000091973	NonProperStrand	2	1	-19.4797
chrX	13166792	13166882	protein_coding	Cask	intron	ENSMUSG00000031012	ProperStrand	3	chr11	67064610	67064690	protein_coding	Myh4	intron	ENSMUSG00000057003	NonProperStrand	2	1	-20.7434
chr17	39846759	39846788	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	32567728	32567828	protein_coding	Cdk9	utr5	ENSMUSG00000009555	NonProperStrand	1	1	-inf
chr18	10052131	10052156	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	2	-4.1082
chr5	112631406	112631486	LTR	MTE2b	MaLR	chr5MTE2b112631311	NonProperStrand	1	chr5	112631069	112631159	SINE	B2_Mm2	B2	chr5B2_Mm2112631029	NonProperStrand	1	1	-inf
chr3	9428345	9428363	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	9	chr2	90395146	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-5.4222
chr16	38158007	38158085	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	chr7	109520200	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-5.4787
chr8	76652372	76652390	SINE	B3	B2	chr8B376652287	NonProperStrand	1	chr2	90395140	90395184	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr12	99645568	99645663	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr16	23110392	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	2	-4.3307
chr16	23110812	23110885	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr10	5646976	5646992	protein_coding	Esr1	intron	ENSMUSG00000019768	NonProperStrand	3	1	-7.8954
chr11	106501291	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	1	-7.3492
chr4	132352774	132352808	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr1	131573998	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-4.0399
chr11	45198683	45198763	LTR	MTB_Mm-int	MaLR	chr11MTB_Mm-int45198596	NonProperStrand	1	chr11	45198409	45198499	LTR	ORR1B1	MaLR	chr11ORR1B145198118	ProperStrand	1	1	-inf
chr17	26253137	26253227	protein_coding	Tmem8	intron	ENSMUSG00000024180	NonProperStrand	1	chr3	118990353	118990370	protein_coding	Dpyd	intron	ENSMUSG00000033308	NonProperStrand	7	1	-inf
chr9	123462101	123462121	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr7	127908200	127908230	protein_coding	Vwa3a	intron	ENSMUSG00000030889	ProperStrand	3	1	-7.1766
chr4	132352894	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr2	64846616	64846635	protein_coding	Grb14	intron	ENSMUSG00000026888	NonProperStrand	1	1	-inf
chr17	39847845	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	mmu-miR-664-3p	6	21	miRNA	mmu-miR-664-3p	.	mmu-miR-664-3p	ProperStrand	1	1	-inf
chr17	34950965	34950981	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	1	-9.7536
chr2	26201477	26201493	protein_coding	Gpsm1	intron	ENSMUSG00000026930	ProperStrand	2	chr5	114851986	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-10.8185
chr17	39848640	39848730	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr11	6528086	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	1	-3.6053
chr13	112578188	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr7	127023068	127023158	protein_coding	Dcun1d3	intron	ENSMUSG00000048787	ProperStrand	5	1	-8.0311
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr16	23111696	23111759	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	1	-3.3492
chr5	121660861	121660877	SINE	ID_B1	B4	chr5ID_B1121660827	NonProperStrand	2	chr8	70895758	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-11.1929
chr1	14075045	14075135	LINE	L1Md_T	L1	chr1L1Md_T14074950	ProperStrand	2	chr1	14074864	14074944	LINE	L1_Mus2	L1	chr1L1_Mus214074778	ProperStrand	1	1	-inf
chr4	44621260	44621340	protein_coding	Pax5	intron	ENSMUSG00000014030	NonProperStrand	6	chr15	78916737	78916827	protein_coding	Eif3l	intron	ENSMUSG00000033047	NonProperStrand	1	1	-inf
chr4	123291354	123291444	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr15	99780758	99780839	protein_coding	1700030F18Rik	intron	ENSMUSG00000045350	ProperStrand	6	2	-18.5287
chr10	81388118	81388180	LTR	ORR1A2-int	MaLR	chr10ORR1A2-int81387913	NonProperStrand	2	chr17	6942042	6942068	protein_coding	Sytl3	intron	ENSMUSG00000041831	ProperStrand	1	1	-inf
chr4	145745108	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	chr16	23110839	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-4.7767
chr10	74332245	74332335	LINE	L1_Mur3	L1	chr10L1_Mur374332093	NonProperStrand	1	chr10	74332683	74332763	LINE	Lx	L1	chr10Lx74332440	NonProperStrand	1	1	-inf
chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	28513337	28513356	protein_coding	Tsc1	intron	ENSMUSG00000026812	NonProperStrand	4	1	-7.2097
chr1	189126291	189126311	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	4	chr13	97190563	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.1245
chr17	39847477	39848074	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	168601390	168601417	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	5	-9.3567
chr19	10988604	10988684	SINE	PB1D7	Alu	chr19PB1D710988616	ProperStrand	1	chr19	10989018	10989108	protein_coding	Zp1	intron	ENSMUSG00000024734	NonProperStrand	1	1	-inf
chr17	88002963	88008603	LINE	Lx8	L1	chr17Lx888007689	ProperStrand	1	chr17	39846977	39846995	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr2	97498797	97498814	LINE	L1Md_F3	L1	chr2L1Md_F397498753	ProperStrand	1	chr4	132352895	132352940	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-inf
chr3	123507993	123508039	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr7	28351518	28351581	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	3	-6.9270
chr13	90099034	90099061	protein_coding	Xrcc4	intron	ENSMUSG00000021615	NonProperStrand	12	chr19	8252252	8252286	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	1	-12.8738
chr5	146261268	146261319	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr8	95746070	95746148	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	2	-9.4581
chr11	60154853	60154943	protein_coding	Tom1l2	intron	ENSMUSG00000000538	ProperStrand	4	chr6	87056701	87056781	protein_coding	D6Ertd527e	intron	ENSMUSG00000090891	NonProperStrand	2	1	-19.9239
chr13	112578188	112578308	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr13	44869606	44870025	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	10	-8.0291
chr11	109011657	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	35981616	35981652	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	7	-5.7314
chr4	43492785	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr8	85518055	85518103	protein_coding	Rnf150	intron	ENSMUSG00000047747	ProperStrand	7	1	-12.1989
chr17	34950962	34950981	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr6	115808034	115808098	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-6.2542
chr13	30597086	30597166	LINE	L1_Rod	L1	chr13L1_Rod30597056	NonProperStrand	1	chr13	30597571	30597661	SINE	RSINE1	B4	chr13RSINE130597522	NonProperStrand	1	1	-inf
chr2	90395158	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr8	119905988	119906004	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	13	1	-4.6792
chr6	126488773	126488863	Low_complexity	AT_rich	Low_complexity	chr6AT_rich126488766	ProperStrand	1	chr6	126488480	126488560	SINE	ID_B1	B4	chr6ID_B1126488460	ProperStrand	1	1	-inf
chr2	25975404	25975484	protein_coding-noncoding	Nacc2	utr3	ENSMUSG00000026932	ProperStrand	1	chr2	25975152	25975242	protein_coding	Nacc2	intron	ENSMUSG00000026932	ProperStrand	4	1	-inf
chr8	124305639	124323693	protein_coding	Jph3	intron	ENSMUSG00000025318	ProperStrand	3	chr10	80867459	80867476	protein_coding	Nfic	intron	ENSMUSG00000055053	ProperStrand	6	1	-18.0393
chr6	4531306	4532770	Unknown	MamRep605	Unknown	chr6MamRep6054531580	ProperStrand	1	chr3	116489183	116489199	protein_coding	Agl	intron	ENSMUSG00000033400	ProperStrand	7	1	-inf
chr14	70103591	70103681	protein_coding-noncoding	R3hcc1	utr3	ENSMUSG00000034194	NonProperStrand	1	chr14	70103092	70103172	protein_coding	R3hcc1	intron	ENSMUSG00000034194	NonProperStrand	1	1	-inf
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-3.4596
chr1	56502446	56502465	LINE	Lx6	L1	chr1Lx656500798	NonProperStrand	1	chr2	90395135	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr2	160351113	160351137	LTR	MTEa	MaLR	chr2MTEa160350875	ProperStrand	1	chr9	15313851	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr3	96176402	96176435	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr7	109521279	109521355	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-4.9831
chr11	67291833	67291923	protein_coding	Gas7	intron	ENSMUSG00000033066	NonProperStrand	2	chr11	67290898	67290978	protein_coding	Gas7	intron	ENSMUSG00000033066	ProperStrand	6	1	-19.1217
chr19	15088826	15088906	LINE	L1MC1	L1	chr19L1MC115088627	ProperStrand	1	chr19	15089185	15089275	LINE	L2	L2	chr19L215089196	NonProperStrand	1	1	-inf
chr14	25663559	25663610	LTR	MLT1J	MaLR	chr14MLT1J25663520	ProperStrand	1	chr17	39847991	39848029	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr17	39846953	39846975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	14276552	14306246	protein_coding	Kdm4d	intron	ENSMUSG00000053914	NonProperStrand	1	1	-inf
chr13	54116234	54116314	LINE	L1_Mur3	L1	chr13L1_Mur354116207	ProperStrand	1	chr13	54116456	54116546	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n54116313	ProperStrand	1	1	-inf
chr11	99017058	99017103	LTR	RLTR25B	ERVK	chr11RLTR25B99017055	ProperStrand	18	chr7	25317356	25317381	protein_coding	Irgq	intron	ENSMUSG00000041037	ProperStrand	1	1	-inf
chr7	127702909	127702926	LTR	MMERVK10C-int	ERVK	chr7MMERVK10C-int127701911	NonProperStrand	1	chr1	167279054	167279144	protein_coding	Dcaf6	intron	ENSMUSG00000026571	NonProperStrand	2	1	-inf
chr9	110281300	110281350	protein_coding	Scap	intron	ENSMUSG00000032485	NonProperStrand	6	chr13	44869576	44869668	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	21	1	-13.7953
chr19	8724532	8724550	SINE	B1_Mus2	Alu	chr19B1_Mus28724406	ProperStrand	2	chr2	130276254	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-11.4177
chr5	146261180	146261197	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr5	74093596	74093645	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	1	-5.9595
chr1	167939246	167939326	lincRNA	Gm17444	intron	ENSMUSG00000091458	NonProperStrand	1	chr7	52353961	52354051	protein_coding	Fcgrt	intron	ENSMUSG00000003420	NonProperStrand	1	1	-inf
chr11	109011798	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	94474078	94474094	LINE	Lx5	L1	chr11Lx594473973	NonProperStrand	1	1	-inf
chr11	109011748	109011775	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	72917752	72917768	protein_coding	Itgae	intron	ENSMUSG00000005947	NonProperStrand	4	1	-5.5999
chr17	39848032	39848060	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr17	87984514	87984613	LTR	RodERV21-int	ERV1	chr17RodERV21-int87984235	NonProperStrand	1	1	-inf
chr5	146260996	146261024	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr14	32191961	32192051	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	1	-4.3277
chr10	23785349	23785396	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	1	-5.7749
chr7	108545644	108545734	protein_coding	Arap1	intron	ENSMUSG00000032812	ProperStrand	3	chr2	52899511	52899591	protein_coding	Fmnl2	intron	ENSMUSG00000036053	NonProperStrand	8	1	-17.4197
chr2	27700262	27700288	LTR	ORR1A2	MaLR	chr2ORR1A227700009	NonProperStrand	1	chr2	27679742	27679842	LTR	RMER20A	ERVK	chr2RMER20A27679541	NonProperStrand	1	1	-inf
chr16	23110390	23111702	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr19	8888537	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	11	-7.8139
chr16	4489128	4489218	protein_coding	Srl	intron	ENSMUSG00000022519	ProperStrand	5	chr5	5445529	5445609	protein_coding	1700015F17Rik	intron	ENSMUSG00000079666	ProperStrand	1	1	-inf
chr7	128992195	128992285	Other	RMER1A	Other	chr7RMER1A128992161	NonProperStrand	1	chr7	128992444	128992524	Other	RMER1A	Other	chr7RMER1A128992349	NonProperStrand	1	1	-inf
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	1	-8.6102
chr14	96117913	96118005	LINE	L1Md_F2	L1	chr14L1Md_F296117711	NonProperStrand	1	chr4	129693875	129693927	protein_coding	Bai2	exon	ENSMUSG00000028782	NonProperStrand	2	1	-inf
chr2	162655081	162655173	LINE	Lx4B	L1	chr2Lx4B162654555	NonProperStrand	1	chr2	162655206	162655286	LINE	Lx9	L1	chr2Lx9162655207	NonProperStrand	1	1	-inf
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr3	123507936	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	2	-7.4187
chr1	176690088	176690106	protein_coding	Fmn2	intron	ENSMUSG00000028354	ProperStrand	4	chr5	3692183	3692200	protein_coding	Ankib1	utr3	ENSMUSG00000040351	NonProperStrand	6	1	-17.3470
chr13	54190150	54190168	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	chr6	47796797	47796844	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	4	1	-12.7927
chr18	10052129	10052156	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr19	8888541	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	3	-9.9588
chr11	34035755	34035835	DNA	MER2	MER2_type	chr11MER234035707	ProperStrand	1	chr11	34036307	34036397	DNA	URR1B	MER1_type	chr11URR1B34036246	NonProperStrand	1	1	-inf
chr17	39847137	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	156645667	156645747	LTR	MuLV-int	ERV1	chr2MuLV-int156644566	NonProperStrand	1	1	-inf
chr11	96526172	96526252	protein_coding	Skap1	intron	ENSMUSG00000057058	NonProperStrand	9	chr11	96589539	96589629	protein_coding	Skap1	intron	ENSMUSG00000057058	ProperStrand	8	1	-14.9344
chr5	30060661	30060741	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	8	chr8	93875268	93875358	protein_coding	Fto	intron	ENSMUSG00000055932	ProperStrand	10	1	-14.7114
chr15	49752707	49752797	DNA	MER47B	MER2_type	chr15MER47B49752699	ProperStrand	1	chr15	50589177	50589257	protein_coding	Trps1	intron	ENSMUSG00000038679	ProperStrand	2	1	-inf
chr16	23110398	23110453	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr11	70947781	70947798	protein_coding	Nlrp1a	intron	ENSMUSG00000069830	ProperStrand	3	1	-7.8954
chr11	80436268	80436289	protein_coding	Myo1d	intron	ENSMUSG00000035441	ProperStrand	3	chr5	92058033	92064416	pseudogene	Gm15710	.	ENSMUSG00000084111	NonProperStrand	9	1	-17.1740
chr2	180501012	180501031	processed_transcript	Gm14343	.	ENSMUSG00000087550	ProperStrand	2	chr1	37865039	37865055	protein_coding	Tsga10	intron	ENSMUSG00000060771	ProperStrand	2	1	-21.5566
chr2	130276254	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr13	49609159	49609192	protein_coding	Ecm2	intron	ENSMUSG00000043631	ProperStrand	1	1	-inf
chr14	15946681	15946771	LINE	L1_Mus1	L1	chr14L1_Mus115946579	NonProperStrand	1	chr14	15946456	15946536	LTR	RLTR10C	ERVK	chr14RLTR10C15946154	ProperStrand	1	1	-inf
chr17	39847077	39847167	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	117914296	117914374	protein_coding	Ptprf	intron	ENSMUSG00000033295	ProperStrand	2	1	-8.6616
chr5	146261155	146261196	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr17	35162562	35162667	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	3	-5.3121
chr2	63980449	63980529	LINE	L1Md_A	L1	chr2L1Md_A63976727	NonProperStrand	1	chr2	63980612	63980702	LINE	L2a	L2	chr2L2a63980529	ProperStrand	1	1	-inf
chr9	123462090	123462185	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	119132614	119132668	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	7	1	-5.2735
chr1	3796563	3796643	LINE	L1Md_F	L1	chr1L1Md_F3796511	ProperStrand	1	chr1	3796385	3796475	LINE	Lx5	L1	chr1Lx53796157	ProperStrand	1	1	-inf
chr17	41292219	41292299	LINE	L1Md_F2	L1	chr17L1Md_F241292003	NonProperStrand	1	chr17	41292604	41292693	LINE	L1Md_F2	L1	chr17L1Md_F241292003	ProperStrand	1	1	-inf
chr15	34440894	34440922	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr1	159340304	159340369	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	8	1	-8.5703
chr14	21016384	21016401	LINE	L1_Mus1	L1	chr14L1_Mus121016306	ProperStrand	1	chr5	114851974	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-inf
chr12	69168875	69168892	LINE	L1_Mus2	L1	chr12L1_Mus269168770	NonProperStrand	2	chr17	39847237	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-8.6616
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr2	145373461	145373478	protein_coding	Slc24a3	intron	ENSMUSG00000063873	NonProperStrand	3	1	-8.9012
chr3	96176389	96176437	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr5	114852002	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	2	-8.3309
chr5	127195781	127195861	LTR	RLTR20B1	ERVK	chr5RLTR20B1127195687	NonProperStrand	1	chr5	127195604	127195694	Simple_repeat	(GGGA)n	Simple_repeat	chr5(GGGA)n127195589	NonProperStrand	1	1	-inf
chr10	23785346	23785374	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	1	-4.8416
chr17	39847510	39847544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	137332619	137332638	protein_coding	Emid2	intron	ENSMUSG00000004415	NonProperStrand	4	1	-4.7422
chr1	155553086	155553176	LTR	ORR1A2	MaLR	chr1ORR1A2155553086	ProperStrand	1	chr1	155552838	155552918	SINE	MIRb	MIR	chr1MIRb155552811	ProperStrand	1	1	-inf
chr15	87223162	87223242	DNA	MER45R	Tip100	chr15MER45R87223114	ProperStrand	1	chr15	87222892	87222982	SINE	B3A	B2	chr15B3A87222833	ProperStrand	1	1	-inf
chr3	123507938	123507961	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr8	10579350	10579368	protein_coding	Myo16	intron	ENSMUSG00000039057	NonProperStrand	3	1	-8.8529
chr10	26280783	26280863	DNA	Tigger8	MER2_type	chr10Tigger826280493	NonProperStrand	1	chr10	26280188	26280278	LINE	Lx2	L1	chr10Lx226279772	NonProperStrand	1	1	-inf
chr17	39847471	39847894	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	2	-3.3148
chr2	118746531	118746622	protein_coding	Bahd1	intron	ENSMUSG00000040007	ProperStrand	2	chr12	103997195	103997214	protein_coding	Ubr7	intron	ENSMUSG00000041712	ProperStrand	1	1	-inf
chr9	111411500	111411590	DNA	RCHARR1	MER1_type	chr9RCHARR1111411305	ProperStrand	1	chr9	111411130	111411210	SINE	B3	B2	chr9B3111411105	ProperStrand	1	1	-inf
chr10	23785399	23785464	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	6619910	6619941	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	1	-6.2282
chr14	56694168	56694186	LTR	ERVL-int	ERVL	chr14ERVL-int56694085	NonProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr7	92910298	92910314	LINE	L1Md_A	L1	chr7L1Md_A92908432	NonProperStrand	2	chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	2	-inf
chr2	22744881	22744913	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr4	120268942	120268959	protein_coding	Gm8439	intron	ENSMUSG00000091297	NonProperStrand	1	1	-inf
chr17	39847249	39847302	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	162906619	162906635	protein_coding	Mybl2	intron	ENSMUSG00000017861	NonProperStrand	3	1	-7.5717
chr5	135168846	135168926	LINE	L1M3	L1	chr5L1M3135168588	NonProperStrand	1	chr5	135169084	135169174	LTR	ORR1E	MaLR	chr5ORR1E135169006	NonProperStrand	1	1	-inf
chrX	37082911	37082929	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr8	12844562	12846047	protein_coding	Atp11a	exon	ENSMUSG00000031441	ProperStrand	39	1	-6.8879
chr2	5379262	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr12	105031235	105031348	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	3	-6.5064
chr9	109162465	109162555	DNA	Tigger7	MER2_type	chr9Tigger7109162489	NonProperStrand	1	chr9	109162111	109162191	SINE	B1_Mur2	Alu	chr9B1_Mur2109162079	NonProperStrand	1	1	-inf
chr8	70895758	70895887	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr13	97190550	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	6	-5.2868
chr2	168011157	168011179	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	chr16	23110840	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.5650
chr16	50847505	50847595	LTR	MT2A	ERVL	chr16MT2A50847413	ProperStrand	1	chr16	50847168	50847248	LTR	MTE2b	MaLR	chr16MTE2b50847123	ProperStrand	1	1	-inf
chr8	34823942	34823980	DNA	MER82	MER2_type	chr8MER8234823890	NonProperStrand	1	chr8	34821939	34821979	SINE	RSINE1	B4	chr8RSINE134821834	ProperStrand	1	1	-inf
chr3	22800697	22800787	LINE	L1Md_A	L1	chr3L1Md_A22800468	NonProperStrand	3	chr3	22800363	22800443	LTR	RLTR44-int	ERVK	chr3RLTR44-int22799792	ProperStrand	3	3	-inf
chr5	96495365	96495382	LTR	ORR1B1	MaLR	chr5ORR1B196495242	ProperStrand	1	chr2	90395163	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr5	121206809	121208432	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr8	43168286	43168354	protein_coding	Zfp353	exon	ENSMUSG00000058906	ProperStrand	1	1	-inf
chr1	127485574	127485618	protein_coding	Slc35f5	intron	ENSMUSG00000026342	ProperStrand	1	chr13	44869606	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-inf
chr19	59251187	59251267	SINE	B3	B2	chr19B359251083	ProperStrand	1	chr19	59251018	59251108	Simple_repeat	(TAGA)n	Simple_repeat	chr19(TAGA)n59251017	NonProperStrand	1	1	-inf
chr2	130276320	130276370	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-3.3342
chr10	7126097	7126114	LINE	L1Md_F2	L1	chr10L1Md_F27122765	ProperStrand	4	chr5	150953040	150953057	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-11.7867
chr16	14203168	14203187	protein_coding	Myh11	intron	ENSMUSG00000018830	ProperStrand	3	chr8	13876111	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-12.6936
chr2	139834141	139834208	protein_coding	Tasp1	intron	ENSMUSG00000039033	ProperStrand	5	chr2	139951513	139951545	protein_coding	Esf1	intron	ENSMUSG00000045624	ProperStrand	1	1	-inf
chr2	84768557	84768647	LINE	Lx2B	L1	chr2Lx2B84768560	ProperStrand	1	chr2	84768719	84768799	LINE	Lx2B	L1	chr2Lx2B84768725	ProperStrand	1	1	-inf
chr10	122565820	122565910	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	9	chr12	67661131	67661211	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-11.8226
chr17	39847109	39847252	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	20562460	20562477	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	7	1	-5.6609
chr2	13878862	13878909	LINE	Lx2A1	L1	chr2Lx2A113878739	ProperStrand	3	chr17	39847863	39847901	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-5.4090
chr15	67104857	67104937	LTR	MTE2b	MaLR	chr15MTE2b67104817	ProperStrand	2	chr14	116123574	116123664	protein_coding	Gpc5	intron	ENSMUSG00000022112	NonProperStrand	11	1	-17.8406
chr16	85591728	85591818	LTR	RMER15	ERVL	chr16RMER1585591328	NonProperStrand	1	chr16	85591863	85591943	LTR	RMER6D	ERVK	chr16RMER6D85591841	ProperStrand	1	1	-inf
chr7	16885534	16885594	SINE	PB1D7	Alu	chr7PB1D716885508	NonProperStrand	1	chr11	69669640	69669730	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-inf
chr7	111663805	111663885	LTR	IAPLTR2_Mm	ERVK	chr7IAPLTR2_Mm111663348	NonProperStrand	1	chr7	111663025	111663115	LTR	MT2_Mm	ERVL	chr7MT2_Mm111662704	NonProperStrand	1	1	-inf
chrX	32598931	32599021	LINE	L1_Mus3	L1	chrXL1_Mus332598924	ProperStrand	1	chrX	32598800	32598880	LINE	Lx4A	L1	chrXLx4A32598814	ProperStrand	1	1	-inf
chr16	61596751	61596767	LINE	Lx2A	L1	chr16Lx2A61596542	NonProperStrand	1	chr17	39847511	39847529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr18	10052132	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr12	87437713	87437785	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	1	-7.0173
chr17	39847446	39847559	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	78335515	78335556	protein_coding	Poldip2	utr3	ENSMUSG00000001100	ProperStrand	3	1	-5.4090
chr11	109011745	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	37082911	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	7	-5.9265
chrX	35710483	35710573	LINE	Lx3_Mus	L1	chrXLx3_Mus35710385	ProperStrand	1	chrX	35711072	35711152	LINE	Lx3_Mus	L1	chrXLx3_Mus35710926	NonProperStrand	1	1	-inf
chr4	95820917	95820933	LTR	IAPEz-int	ERVK	chr4IAPEz-int95820631	ProperStrand	2	chr16	24984418	24984435	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	1	-16.0659
chr3	13186147	13186237	LINE	L1Md_F2	L1	chr3L1Md_F213185697	ProperStrand	1	chr13	67706772	67706852	protein_coding	AA987161	intron	ENSMUSG00000058093	ProperStrand	1	1	-inf
chr5	114851974	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr16	23110825	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	11	-5.9192
chr17	39846419	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	44869575	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	24	-3.8208
chr15	34440790	34440887	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr18	35557176	35557225	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	2	-4.2706
chr11	39518356	39518446	LINE	L1_Mus2	L1	chr11L1_Mus239517870	NonProperStrand	1	chr11	39518540	39518620	LINE	Lx5	L1	chr11Lx539518484	NonProperStrand	1	1	-inf
chr14	45351497	45351513	LINE	L1Md_F2	L1	chr14L1Md_F245351453	ProperStrand	1	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	1	-inf
chr7	120717212	120717302	LINE	L1Md_A	L1	chr7L1Md_A120717115	NonProperStrand	2	chr7	120990014	120990094	protein_coding	Spon1	intron	ENSMUSG00000038156	NonProperStrand	8	2	-inf
chr14	48481186	48481266	LTR	MTA_Mm	MaLR	chr14MTA_Mm48481104	ProperStrand	1	chr14	48480999	48481089	LTR	ORR1A0	MaLR	chr14ORR1A048480759	ProperStrand	1	1	-inf
chr3	60766346	60766436	LTR	MTC-int	MaLR	chr3MTC-int60765686	NonProperStrand	1	chr3	60766541	60766621	LTR	MTC-int	MaLR	chr3MTC-int60766541	NonProperStrand	1	1	-inf
chr8	118026605	118026685	LINE	Lx3A	L1	chr8Lx3A118026589	NonProperStrand	1	chr8	118026450	118026540	LINE	Lx3_Mus	L1	chr8Lx3_Mus118025563	ProperStrand	1	1	-inf
chr14	62383856	62383936	LINE	L1MB8	L1	chr14L1MB862383682	ProperStrand	1	chr14	62384105	62384195	Simple_repeat	(CATA)n	Simple_repeat	chr14(CATA)n62384126	ProperStrand	1	1	-inf
chr15	56399044	56399134	SINE	B1_Mur1	Alu	chr15B1_Mur156399061	NonProperStrand	1	chr15	55343510	55343590	protein_coding	Col14a1	intron	ENSMUSG00000022371	NonProperStrand	1	1	-inf
chr17	39846351	39846977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	15313814	15315285	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	17	-3.7382
chr11	109011656	109011875	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	39847428	39848079	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	108	-8.1371
chr16	35981701	35981766	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	6	chr2	90395145	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-6.2750
chr14	12380499	12380589	LTR	ORR1D1	MaLR	chr14ORR1D112380489	NonProperStrand	1	chr14	12380923	12381003	SINE	ID_B1	B4	chr14ID_B112380930	ProperStrand	1	1	-inf
chr17	39843384	39843474	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	chr16	20098306	20098386	protein_coding	Klhl24	intron	ENSMUSG00000062901	ProperStrand	1	1	-inf
chr3	115197960	115198040	Low_complexity	GA-rich	Low_complexity	chr3GA-rich115197897	NonProperStrand	1	chr3	115197793	115197883	SINE	B3	B2	chr3B3115197676	NonProperStrand	1	1	-inf
chr6	125121785	125121806	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	10	chr19	8888538	8888596	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-7.1634
chr2	131148095	131148185	protein_coding	Rnf24	intron	ENSMUSG00000048911	NonProperStrand	1	chr2	131147887	131147967	pseudogene	Gm14284	.	ENSMUSG00000082044	NonProperStrand	1	1	-inf
chr8	88819954	88819972	LINE	L1Md_F2	L1	chr8L1Md_F288816497	NonProperStrand	2	chr13	44869605	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chr11	106501233	106501327	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr16	23110819	23110917	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	14	-16.5073
chr17	39843701	39843780	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	chr11	6419482	6419572	protein_coding	Myo1g	utr5	ENSMUSG00000020437	NonProperStrand	1	1	-inf
chr17	39848108	39848143	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr6	143189539	143189639	LTR	MTEa	MaLR	chr6MTEa143189404	ProperStrand	1	1	-inf
chr3	123507995	123508058	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr2	158356424	158356542	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	4	-6.0193
chr18	42202602	42202623	SINE	MIR	MIR	chr18MIR42202444	ProperStrand	2	chr19	8888597	8888675	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr6	97145264	97145281	protein_coding	Uba3	intron	ENSMUSG00000030061	ProperStrand	2	chr17	13548314	13548330	protein_coding	Tcp10c	intron	ENSMUSG00000052469	ProperStrand	1	1	-inf
chr4	133347518	133347608	LTR	MTD	MaLR	chr4MTD133347466	NonProperStrand	1	chr4	133347363	133347443	LTR	RLTR12B	ERVK	chr4RLTR12B133347282	ProperStrand	1	1	-inf
chr17	39846769	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	44990493	44990525	antisense	Gm12679	.	ENSMUSG00000086205	NonProperStrand	1	1	-inf
chr14	48948781	48948861	LTR	LTRIS2	ERV1	chr14LTRIS248948782	ProperStrand	1	chr14	48948550	48948640	SINE	B2_Mm2	B2	chr14B2_Mm248948494	NonProperStrand	1	1	-inf
chr12	9965702	9965782	LTR	MTEa	MaLR	chr12MTEa9965571	ProperStrand	1	chr12	9965820	9965910	LTR	MTEa	MaLR	chr12MTEa9965826	ProperStrand	1	1	-inf
chr11	77724970	77725050	SINE	B1_Mur1	Alu	chr11B1_Mur177724875	NonProperStrand	1	chr11	77724634	77724724	SINE	PB1D7	Alu	chr11PB1D777724616	ProperStrand	1	1	-inf
chr2	111057810	111057900	protein_coding	4930430A15Rik	intron	ENSMUSG00000027157	NonProperStrand	1	chr8	60269752	60269832	protein_coding	Galntl6	intron	ENSMUSG00000061864	ProperStrand	13	1	-inf
chr5	146261266	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-6.4955
chr17	39847339	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	156664474	156664574	antisense	Gm14230	.	ENSMUSG00000087179	NonProperStrand	1	1	-inf
chr7	111070677	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	chr16	23110835	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-4.3761
chr11	109012012	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr16	91227473	91227490	protein_coding	Olig2	exon	ENSMUSG00000039830	NonProperStrand	1	1	-inf
chr18	63078738	63078754	LTR	ORR1D1	MaLR	chr18ORR1D163078474	NonProperStrand	3	chr9	54168571	54168589	protein_coding	Gldn	intron	ENSMUSG00000046167	ProperStrand	3	1	-19.6922
chrX	116593957	116594047	LTR	ORR1B1	MaLR	chrXORR1B1116593789	ProperStrand	1	chrX	116593389	116593469	LTR	ORR1D1	MaLR	chrXORR1D1116593299	NonProperStrand	1	1	-inf
chr5	85939307	85939326	LINE	L1Md_F	L1	chr5L1Md_F85936677	NonProperStrand	6	chr2	90395158	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-6.2750
chr19	8724252	8724323	SINE	B1F	Alu	chr19B1F8724255	ProperStrand	4	chr5	17776753	17776783	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	1	-15.7003
chrX	7867560	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	16	chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	2	-7.2134
chr2	90395154	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr10	126979165	126979195	protein_coding	Lrp1	intron	ENSMUSG00000040249	NonProperStrand	2	1	-8.9527
chr10	23785399	23785424	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	20112668	20112686	protein_coding	Rab1	intron	ENSMUSG00000020149	ProperStrand	4	1	-8.5965
chr6	35398313	35398331	LINE	L1Md_T	L1	chr6L1Md_T35396261	ProperStrand	3	chr18	72350597	72350614	protein_coding	Dcc	intron	ENSMUSG00000060534	ProperStrand	6	1	-18.0393
chr15	23454706	23454724	LINE	L1_Rod	L1	chr15L1_Rod23454645	ProperStrand	6	chr17	39847779	39847796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-3.8783
chr2	90395135	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	17776758	17776796	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	1	-4.6792
chr15	81006811	81007481	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	4	chr16	23110837	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr1	36008752	36008832	SINE	RSINE1	B4	chr1RSINE136008708	ProperStrand	1	chr1	36008350	36008440	Simple_repeat	(TC)n	Simple_repeat	chr1(TC)n36008342	NonProperStrand	1	1	-inf
chr12	87437681	87437716	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr6	47877756	47877783	protein_coding	Zfp212	intron	ENSMUSG00000052763	ProperStrand	1	1	-inf
chr7	141448802	141448887	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr8	126944900	126944964	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-5.2308
chr2	89528304	89528321	LINE	L1_Mm	L1	chr2L1_Mm89527548	NonProperStrand	3	chr13	44869606	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-8.8788
chrX	72992110	72992127	lincRNA	4933407K13Rik	exon	ENSMUSG00000087396	NonProperStrand	7	chr17	50420136	50420161	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	1	-13.2728
chr11	55482776	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr2	32963351	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-3.0521
chr11	46206933	46207023	LINE	L1MC5	L1	chr11L1MC546206907	NonProperStrand	1	chr11	46207261	46207341	SINE	B3A	B2	chr11B3A46207234	NonProperStrand	1	1	-inf
chr12	99645567	99645665	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr16	23110835	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	3	-5.9370
chr13	112578215	112578308	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr4	137548501	137549599	protein_coding	Eif4g3	utr5	ENSMUSG00000028760	ProperStrand	13	1	-6.0074
chr17	12919677	12919715	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	chr8	70895772	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-3.9854
chr8	70895775	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr5	141983897	141983915	protein_coding	Sdk1	intron	ENSMUSG00000039683	ProperStrand	18	1	-6.2018
chr6	57122485	57122565	LINE	L1_Mur1	L1	chr6L1_Mur157122470	ProperStrand	1	chr6	57122371	57122461	LTR	RLTR20D	ERVK	chr6RLTR20D57122080	ProperStrand	1	1	-inf
chr17	39847919	39847974	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr2	5379252	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	NonProperStrand	10	1	-9.6245
chr13	9834326	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr6	113329308	113329324	protein_coding	Arpc4	intron	ENSMUSG00000079426	ProperStrand	1	1	-inf
chr1	116877594	116877684	LINE	L1Md_F3	L1	chr1L1Md_F3116877534	NonProperStrand	1	chr1	116877877	116877957	LINE	L1_Mur2	L1	chr1L1_Mur2116877682	NonProperStrand	1	1	-inf
chrX	74272525	74272570	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr4	145745108	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-8.3904
chr13	44869591	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr8	23058513	23058531	protein_coding	Defb13	intron	ENSMUSG00000044222	NonProperStrand	1	1	-inf
chr8	108856819	108856926	lincRNA	Gm17245	intron	ENSMUSG00000067626	NonProperStrand	3	chr9	123461905	123461928	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-7.1766
chr6	38210116	38210206	LINE	L1ME1	L1	chr6L1ME138210141	NonProperStrand	1	chr6	38209839	38209919	SINE	B1_Mus1	Alu	chr6B1_Mus138209808	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr8	123254529	123254545	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	48	1	-3.1715
chr12	16707051	16707131	protein_coding	Greb1	intron	ENSMUSG00000036523	NonProperStrand	2	chr12	16710037	16710127	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	1	-16.1448
chr6	134333092	134333172	LTR	RMER15	ERVL	chr6RMER15134332792	ProperStrand	1	chr6	134333232	134333324	SINE	RSINE1	B4	chr6RSINE1134333221	ProperStrand	1	1	-inf
chr17	39847227	39847256	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	82655138	82655158	LTR	RLTR21	ERVK	chr2RLTR2182653954	ProperStrand	1	1	-inf
chr17	39848099	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	1	-5.5650
chr17	39845115	39845208	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	201	chr11	116757693	116757741	SINE	B2_Mm2	B2	chr11B2_Mm2116757705	ProperStrand	1	1	-inf
chr2	120073929	120074019	SINE	B1_Mus2	Alu	chr2B1_Mus2120073897	NonProperStrand	1	chr2	120074086	120074166	Simple_repeat	(GAA)n	Simple_repeat	chr2(GAA)n120074046	NonProperStrand	1	1	-inf
chr17	39847048	39847082	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	31512192	31512209	LTR	RMER17C	ERVK	chr17RMER17C31512071	NonProperStrand	1	1	-inf
chr9	62099273	62099290	LTR	ORR1B1-int	MaLR	chr9ORR1B1-int62097890	NonProperStrand	1	chr13	20419507	20419541	protein_coding	Elmo1	intron	ENSMUSG00000041112	NonProperStrand	5	1	-inf
chr15	91779914	91779994	LTR	BGLII	ERVK	chr15BGLII91779760	NonProperStrand	1	chr15	91779531	91779621	SINE	RSINE1	B4	chr15RSINE191779509	NonProperStrand	1	1	-inf
chr4	132352958	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr14	32578839	32578855	protein_coding	Ankrd28	intron	ENSMUSG00000014496	ProperStrand	2	1	-12.1295
chr5	146261080	146261102	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	127527935	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-4.4889
chr2	165547720	165547738	protein_coding	Eya2	intron	ENSMUSG00000017897	ProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr11	99017074	99017141	SINE	B1_Mur3	Alu	chr11B1_Mur399017062	ProperStrand	6	chr5	107905187	107905287	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-9.8121
chr4	123293153	123293223	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr1	131573997	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-6.7599
chr2	5379317	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr17	47489605	47489621	protein_coding	Trerf1	intron	ENSMUSG00000064043	NonProperStrand	2	1	-9.4768
chr19	14785024	14785104	LTR	MTEa-int	MaLR	chr19MTEa-int14784028	NonProperStrand	1	chr19	14785284	14785374	LTR	MTEa-int	MaLR	chr19MTEa-int14785236	NonProperStrand	1	1	-inf
chr15	15072438	15072518	LINE	L1MEg	L1	chr15L1MEg15072459	NonProperStrand	1	chr15	15072829	15072919	LTR	RMER6C	ERVK	chr15RMER6C15072747	NonProperStrand	1	1	-inf
chr16	35981600	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-3.8812
chr5	146260994	146261018	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr19	22852057	22852099	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	12	1	-5.7818
chr11	69740414	69740441	SINE	B2_Mm2	B2	chr11B2_Mm269740338	ProperStrand	1	chr2	90395129	90395171	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr16	35981617	35981638	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr15	80929093	80929159	protein_coding	Mkl1	intron	ENSMUSG00000042292	NonProperStrand	4	1	-11.6138
chr16	31335623	31335703	SINE	B4A	B4	chr16B4A31335614	NonProperStrand	1	chr2	77001727	77001817	protein_coding	Ccdc141	intron	ENSMUSG00000044033	ProperStrand	5	1	-inf
chr2	168011158	168011185	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	chr10	127043127	127043143	protein_coding	Lrp1	intron	ENSMUSG00000040249	ProperStrand	3	1	-16.5610
chr7	107314211	107314301	LINE	L1MA6	L1	chr7L1MA6107314205	ProperStrand	2	chr7	107314106	107314186	LTR	ORR1D1	MaLR	chr7ORR1D1107313861	NonProperStrand	2	2	-inf
chr17	39847059	39847159	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	94951332	94951499	Simple_repeat	(CTCTG)n	Simple_repeat	chr11(CTCTG)n94951346	ProperStrand	2	1	-8.6616
chrX	13553347	13553427	LINE	L1Md_F	L1	chrXL1Md_F13553226	ProperStrand	1	chrX	13553118	13553208	LINE	L1Md_F2	L1	chrXL1Md_F213553032	ProperStrand	1	1	-inf
chr9	123462100	123462142	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr9	58489031	58489098	protein_coding	Nptn	intron	ENSMUSG00000032336	ProperStrand	2	1	-8.2644
chr12	67667927	67668007	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	chr17	57959850	57959940	protein_coding	Cntnap5c	intron	ENSMUSG00000038048	ProperStrand	8	1	-12.0736
chr17	37076007	37076097	DNA	MER5B	MER1_type	chr17MER5B37075949	NonProperStrand	1	chr17	37075839	37075919	LINE	L2a	L2	chr17L2a37075718	NonProperStrand	1	1	-inf
chr4	43492817	43492845	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr16	38158003	38158046	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	1	-9.9007
chr12	104767120	104767138	LINE	L1M5	L1	chr12L1M5104767101	ProperStrand	1	chr2	5379309	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr11	51737897	51737923	SINE	B4	B4	chr11B451737897	NonProperStrand	1	chr8	13876096	13876124	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-inf
chrX	7173886	7173966	protein_coding-noncoding	Ppp1r3f	utr3	ENSMUSG00000039556	ProperStrand	1	chrX	7173633	7173723	protein_coding	Ccdc22	exon	ENSMUSG00000031143	ProperStrand	1	1	-inf
chr9	120130415	120130542	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	1	-3.6748
chr10	7126097	7126114	LINE	L1Md_F2	L1	chr10L1Md_F27122765	ProperStrand	4	chr2	122011619	122011635	protein_coding	Patl2	intron	ENSMUSG00000027233	ProperStrand	2	1	-19.9239
chr17	39847105	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr6	3201452	3201571	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	20	6	-23.1548
chr14	75847898	75848035	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr2	90395129	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	5	-6.1195
chr17	24149134	24149214	SINE	PB1D10	Alu	chr17PB1D1024149128	NonProperStrand	1	chr17	24149259	24149349	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n24149254	ProperStrand	1	1	-inf
chr7	47188325	47188415	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	10	chr9	9865520	9865600	protein_coding	Cntn5	intron	ENSMUSG00000039488	NonProperStrand	10	1	-14.2370
chr1	115283435	115283525	SINE	B4	B4	chr1B4115283377	NonProperStrand	1	chr1	115283653	115283733	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n115283659	NonProperStrand	1	1	-inf
chr1	161035399	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr17	39847474	39847989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	6	-8.3195
chr5	150953040	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	chr16	23110839	23110919	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	4	-5.0412
chr5	125404246	125404268	Low_complexity	AT_rich	Low_complexity	chr5AT_rich125404251	NonProperStrand	2	chr18	35557078	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-12.0542
chr2	179587674	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	10	chr5	114852015	114852038	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-7.0357
chr17	39847339	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	179137354	179137372	protein_coding	Akt3	intron	ENSMUSG00000019699	NonProperStrand	8	1	-3.3062
chr12	104166941	104167031	LINE	Lx9	L1	chr12Lx9104165712	NonProperStrand	1	chr12	104167141	104167221	LINE	Lx9	L1	chr12Lx9104167131	NonProperStrand	1	1	-inf
chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr3	96724351	96724402	protein_coding	Gja8	intron	ENSMUSG00000049908	ProperStrand	8	1	-5.6660
chr11	109011746	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	121205006	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	17	-6.5441
chr17	39847675	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr5	23972278	23972368	protein_coding	Agap3	intron	ENSMUSG00000023353	ProperStrand	2	1	-13.4248
chr3	123507988	123508068	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr5	114851994	114852038	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	6	-4.4214
chr18	90551548	90551628	LINE	Lx6	L1	chr18Lx690551442	NonProperStrand	1	chr18	90551929	90552019	SINE	B4	B4	chr18B490551806	NonProperStrand	1	1	-inf
chr11	22453019	22453099	LINE	L1ME4a	L1	chr11L1ME4a22452875	ProperStrand	1	chr11	22452488	22452578	SINE	PB1D9	Alu	chr11PB1D922452489	NonProperStrand	1	1	-inf
chr11	97781674	97781742	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr18	64579195	64581905	SINE	RSINE1	B4	chr18RSINE164579137	ProperStrand	3	1	-11.4580
chr13	97140027	97140117	SINE	PB1D10	Alu	chr13PB1D1097140033	NonProperStrand	1	chr13	97139925	97140005	Simple_repeat	(TTGG)n	Simple_repeat	chr13(TTGG)n97139903	ProperStrand	1	1	-inf
chr5	68384499	68384579	LINE	L1_Mm	L1	chr5L1_Mm68384311	NonProperStrand	1	chr5	68384705	68384795	LINE	L1_Mus1	L1	chr5L1_Mus168384663	ProperStrand	1	1	-inf
chr11	106501275	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr17	35162561	35162655	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	1	-3.6916
chr6	131380323	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr11	55407243	55409984	protein_coding	Glra1	intron	ENSMUSG00000000263	ProperStrand	7	1	-13.0225
chr14	21764564	21764586	protein_coding	Vcl	intron	ENSMUSG00000021823	ProperStrand	2	chr16	23110837	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-8.6674
chr17	23803384	23808067	protein_coding	Ccdc64b	intron	ENSMUSG00000043782	ProperStrand	1	chr16	23110835	23110866	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr6	59594884	59594964	LINE	L1Md_F2	L1	chr6L1Md_F259593680	ProperStrand	1	chr6	59021587	59021677	LTR	LTR40b	ERVL	chr6LTR40b59021612	NonProperStrand	1	1	-inf
chr17	78377136	78377226	LINE	Lx5	L1	chr17Lx578377012	NonProperStrand	1	chr17	78377211	78377291	LINE	Lx5	L1	chr17Lx578377139	NonProperStrand	1	1	-inf
chr2	4992189	4992215	LINE	L1Md_F2	L1	chr2L1Md_F24990750	ProperStrand	1	chr17	39846625	39846724	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr3	49956966	49957046	LINE	L1VL4	L1	chr3L1VL449956897	NonProperStrand	1	chr3	49956729	49956819	Simple_repeat	(TAGA)n	Simple_repeat	chr3(TAGA)n49956736	NonProperStrand	1	1	-inf
chr8	47284155	47284235	LTR	MTE2a	MaLR	chr8MTE2a47284054	ProperStrand	1	chr8	47284430	47284520	LTR	ORR1D1	MaLR	chr8ORR1D147284423	NonProperStrand	1	1	-inf
chr11	5071079	5071527	LTR	MLT1A1	MaLR	chr11MLT1A15071061	NonProperStrand	2	chrX	134758586	134758602	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	14	1	-17.3435
chr12	99645566	99645657	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr3	123507994	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	2	-5.6427
chr10	76596193	76609565	protein_coding	Col18a1	intron	ENSMUSG00000001435	ProperStrand	12	chr2	90395141	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	2	-8.1138
chr17	39847812	39847892	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	13687350	13687440	protein_coding	Tcte2	intron	ENSMUSG00000038347	ProperStrand	6	1	-3.8783
chr10	21775362	21775442	LTR	RLTR17	ERVK	chr10RLTR1721775306	ProperStrand	1	chr10	21775512	21775602	LTR	RLTR17	ERVK	chr10RLTR1721775487	ProperStrand	1	1	-inf
chr17	39847479	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	118916380	118916466	protein_coding	Casc5	intron	ENSMUSG00000027326	ProperStrand	1	1	-inf
chr8	121796979	121797022	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	32	chr8	95746100	95746148	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-8.2820
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr16	23111310	23111377	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-3.5289
chr2	120180707	120180797	LTR	MTD	MaLR	chr2MTD120180590	NonProperStrand	1	chr2	120181022	120181102	protein_coding	Tmem87a	utr3	ENSMUSG00000033808	ProperStrand	2	1	-inf
chr16	36656742	36656822	protein_coding	Cd86	intron	ENSMUSG00000022901	ProperStrand	1	chr14	3458956	3459044	protein_coding	Gm1973	intron	ENSMUSG00000079406	ProperStrand	1	1	-inf
chr4	132352443	132352523	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	mmu-miR-6240	2	20	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-3.4900
chr17	39846415	39846989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	126944846	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	10	-5.0516
chr4	25224061	25224151	LTR	RLTR10A	ERVK	chr4RLTR10A25223866	ProperStrand	1	chr12	67661132	67661212	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr10	46397269	46397349	LINE	L1M3	L1	chr10L1M346397250	ProperStrand	1	chr10	46397531	46397621	LINE	L1M3	L1	chr10L1M346397365	ProperStrand	1	1	-inf
chr3	123507988	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr11	74865416	74865457	protein_coding	Smg6	intron	ENSMUSG00000038290	NonProperStrand	3	1	-8.8529
chr3	91121888	91121978	LTR	IAP-d-int	ERVK	chr3IAP-d-int91121181	NonProperStrand	1	chr7	5409548	5409628	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int5409405	ProperStrand	2	1	-inf
chr5	30060660	30060740	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	8	chr18	25793672	25793762	protein_coding	Celf4	intron	ENSMUSG00000024268	ProperStrand	2	1	-18.5064
chr6	131380322	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr16	23110835	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-5.3644
chr7	58364677	58364757	LINE	Lx8	L1	chr7Lx858364606	ProperStrand	1	chr7	58809747	58809837	protein_coding	Ano5	intron	ENSMUSG00000055489	NonProperStrand	2	1	-inf
chr17	12919642	12919662	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	56	chr3	62159174	62159222	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	1	-9.7292
chr11	102436215	102436383	SINE	B3A	B2	chr11B3A102436173	NonProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr5	31257822	31257851	protein_coding	Preb	utr3	ENSMUSG00000045302	ProperStrand	2	1	-13.6458
chr2	104865029	104865119	LTR	MTC	MaLR	chr2MTC104864798	ProperStrand	1	chr2	104605614	104605694	protein_coding	Qser1	intron	ENSMUSG00000074994	NonProperStrand	1	1	-inf
chr16	35981610	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr5	114852002	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	2	-4.6415
chr16	23110785	23110885	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr8	117256904	117256961	protein_coding	Wwox	intron	ENSMUSG00000004637	ProperStrand	23	1	-3.6086
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr1	159340310	159340348	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	8	1	-5.6660
chr3	142312419	142312456	LINE	L1M4b	L1	chr3L1M4b142312410	ProperStrand	1	chr8	70895758	70895833	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-inf
chr1	97769091	97769171	LINE	L1Md_F2	L1	chr1L1Md_F297768795	ProperStrand	1	chr1	97768635	97768725	LINE	Lx9	L1	chr1Lx997768642	ProperStrand	1	1	-inf
chr9	109725493	109725583	protein_coding	Spink8	intron	ENSMUSG00000050074	ProperStrand	1	chr9	109730943	109731023	pseudogene	3000002C10Rik	.	ENSMUSG00000070282	NonProperStrand	1	1	-inf
chr17	39846580	39846692	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr2	155930041	155930057	protein_coding	Cpne1	intron	ENSMUSG00000074643	NonProperStrand	1	1	-inf
chr5	146261162	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr18	36947051	36947068	protein_coding-noncoding	Hars2	utr5	ENSMUSG00000019143	NonProperStrand	1	1	-inf
chr11	109011820	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	44929151	44929170	LTR	RMER17B	ERVK	chr12RMER17B44928809	ProperStrand	1	1	-inf
chr15	88822119	88823067	protein_coding	Mov10l1	intron	ENSMUSG00000015365	ProperStrand	4	chr6	4931881	4932010	protein_coding	Ppp1r9a	intron	ENSMUSG00000032827	ProperStrand	4	1	-18.2441
chr4	132352774	132352827	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr15	80082858	80082879	protein_coding	Smcr7l	utr3	ENSMUSG00000022412	NonProperStrand	56	1	-4.2927
chr3	123507993	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr2	158625290	158625307	protein_coding	Dhx35	intron	ENSMUSG00000027655	NonProperStrand	6	2	-11.9429
chr12	72536314	72536394	LTR	RMER10B	ERVL	chr12RMER10B72536223	NonProperStrand	2	chr12	72536409	72536499	Simple_repeat	(GA)n	Simple_repeat	chr12(GA)n72536430	ProperStrand	1	1	-inf
chr13	95330598	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr2	5379273	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	3	-4.2750
chr11	108905194	108905274	DNA	URR1A	MER1_type	chr11URR1A108905165	NonProperStrand	1	chr11	108904921	108905011	LINE	L3	CR1	chr11L3108904941	NonProperStrand	1	1	-inf
chr2	69593450	69593540	SINE	B3	B2	chr2B369593468	NonProperStrand	1	chr2	69593902	69593982	SINE	B4A	B4	chr2B4A69593891	NonProperStrand	1	1	-inf
chr12	87437679	87437769	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr13	112578206	112578306	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	2	-4.7458
chr3	56031548	56031655	DNA	URR1B	MER1_type	chr3URR1B56031529	ProperStrand	1	chr17	39846097	39846195	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	NonProperStrand	45	1	-inf
chr4	137717339	137717419	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	13	chr4	129517962	129518052	protein_coding	Ptp4a2	intron	ENSMUSG00000028788	NonProperStrand	1	1	-inf
chr11	48759864	48759944	protein_coding	9930111J21Rik1	utr3	ENSMUSG00000069893	ProperStrand	1	chr11	48759464	48759554	protein_coding	Psme2b-ps	exon	ENSMUSG00000078153	ProperStrand	1	1	-inf
chr17	39846953	39846990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	32423397	32423414	protein_coding	Efcab9	utr3	ENSMUSG00000044056	NonProperStrand	2	1	-7.0123
chr3	29719356	29719446	LINE	L1MC1	L1	chr3L1MC129719315	NonProperStrand	1	chr3	29719179	29719259	SINE	B4A	B4	chr3B4A29718970	NonProperStrand	1	1	-inf
chr16	23111300	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr15	79252988	79253603	protein_coding	Csnk1e	utr3	ENSMUSG00000022433	NonProperStrand	3	1	-7.8954
chr11	109011826	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	82486801	82486826	protein_coding	Tacr1	intron	ENSMUSG00000030043	ProperStrand	3	1	-6.2761
chr11	109011820	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	89350962	89350981	lincRNA	Gm15609	exon	ENSMUSG00000086602	ProperStrand	1	1	-inf
chr18	22997230	22997248	protein_coding	Nol4	intron	ENSMUSG00000041923	ProperStrand	5	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.9532
chr14	27096083	27099568	LTR	RMER10A	ERVL	chr14RMER10A27099296	ProperStrand	2	chr14	27095946	27096026	SINE	B1_Mm	Alu	chr14B1_Mm27095937	NonProperStrand	2	2	-inf
chr17	63894515	63894605	LTR	MTEa	MaLR	chr17MTEa63894361	NonProperStrand	1	chr17	63893937	63894017	LTR	RLTR45	ERVK	chr17RLTR4563893797	ProperStrand	1	1	-inf
chr2	164416013	164416103	protein_coding	Spinlw1	intron	ENSMUSG00000017733	ProperStrand	1	chr2	164426696	164426776	protein_coding	Wfdc8	intron	ENSMUSG00000070533	NonProperStrand	1	1	-inf
chr11	59486953	59486982	protein_coding	Mprip	intron	ENSMUSG00000005417	NonProperStrand	5	chr17	24719675	24719775	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-10.0146
chr13	16539926	16540017	LINE	Lx5	L1	chr13Lx516539835	NonProperStrand	4	chr18	57547046	57547126	protein_coding	Prrc1	intron	ENSMUSG00000024594	ProperStrand	8	4	-inf
chr16	73024153	73024169	protein_coding	Robo1	intron	ENSMUSG00000022883	NonProperStrand	5	chr16	23111616	23111646	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-10.2430
chr2	157560450	157560467	SINE	B4	B4	chr2B4157560447	ProperStrand	1	chr4	154297738	154297757	protein_coding	Tnfrsf14	intron	ENSMUSG00000042333	ProperStrand	1	1	-inf
chr17	39847532	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	119913625	119913740	protein_coding	Wnk1	intron	ENSMUSG00000089896	NonProperStrand	1	1	-inf
chr18	45929265	45929355	LINE	L1Md_F2	L1	chr18L1Md_F245929179	ProperStrand	1	chr18	45928912	45928992	LINE	L1_Mm	L1	chr18L1_Mm45928733	NonProperStrand	1	1	-inf
chr19	8724011	8724033	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr8	41349616	41351901	LINE	L1Md_F2	L1	chr8L1Md_F241349338	ProperStrand	1	1	-inf
chr4	132309940	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr7	127527977	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-4.3173
chr17	5473114	5473194	LTR	MLT1B	MaLR	chr17MLT1B5473045	NonProperStrand	1	chr17	5473251	5473341	LTR	MLT1B	MaLR	chr17MLT1B5473260	NonProperStrand	1	1	-inf
chr2	95119327	95119407	SINE	B1_Mur1	Alu	chr2B1_Mur195119331	NonProperStrand	1	chr2	95119920	95120010	SINE	PB1D10	Alu	chr2PB1D1095119920	NonProperStrand	1	1	-inf
chr15	85177748	85177777	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	chr9	50763000	50763016	protein_coding	Sik2	intron	ENSMUSG00000037112	ProperStrand	3	1	-15.0480
chr6	115808085	115808113	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr1	132504428	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	13	1	-9.0561
chr2	156202828	156202845	LTR	MTD	MaLR	chr2MTD156202640	ProperStrand	1	chr2	76797463	76797480	protein_coding	Ttn	intron	ENSMUSG00000051747	ProperStrand	2	1	-inf
chr13	44869575	44870017	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr9	15313803	15315283	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	7	-5.6665
chr12	99645567	99645661	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr5	121205025	121205077	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-4.2759
chr12	91952238	91952328	LINE	Lx5	L1	chr12Lx591952212	ProperStrand	1	chr18	3818310	3818390	LINE	L1Md_F3	L1	chr18L1Md_F33818287	NonProperStrand	1	1	-inf
chr14	75847955	75848034	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr5	146261001	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	2	-3.0271
chr17	39845858	39845938	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chr4	43492809	43492899	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	1	-5.7684
chr4	107022360	107022440	antisense	Gm12869	.	ENSMUSG00000086041	ProperStrand	1	chr4	104243969	104244059	protein_coding	Dab1	intron	ENSMUSG00000028519	ProperStrand	4	1	-inf
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	1	-7.9586
chrX	4899369	4899402	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr2	44927457	44927475	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	3	1	-15.2178
chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	64175050	64175097	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	9	1	-5.4222
chr17	39843386	39843466	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	chr9	118879351	118879441	protein_coding	Ctdspl	intron	ENSMUSG00000047409	ProperStrand	8	1	-10.0973
chr17	39844648	39844666	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	159	chr5	31086320	31086337	protein_coding	Dpysl5	intron	ENSMUSG00000029168	ProperStrand	7	1	-9.3736
chr3	82903493	82903583	LTR	MER21B	ERV1	chr3MER21B82903183	ProperStrand	1	chr3	82903844	82903924	LTR	MER21B	ERV1	chr3MER21B82903728	ProperStrand	1	1	-inf
chr9	15313880	15315322	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	chr12	105031126	105031351	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	3	-8.9645
chr17	39847440	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chrX	4136309	4136359	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	2	-3.0556
chr5	146261240	146261278	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr1	63179033	63179056	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	1	-9.6141
chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr10	77269239	77269287	protein_coding	Gm7137	intron	ENSMUSG00000090579	NonProperStrand	2	1	-8.9865
chr17	39847331	39847366	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	31406342	31406360	LTR	MLT1J2	MaLR	chr2MLT1J231406092	NonProperStrand	1	1	-inf
chr17	70963671	70963831	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr9	123461802	123462144	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	7	-15.1710
chr5	121660861	121660877	SINE	ID_B1	B4	chr5ID_B1121660827	NonProperStrand	2	chr14	33073308	33073326	protein_coding	Parg	intron	ENSMUSG00000021911	NonProperStrand	2	1	-21.5566
chr17	39846462	39847132	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	35162562	35162691	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	7	-4.7208
chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	chr5	114851979	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-5.6249
chr16	15467199	15467279	LINE	Lx2	L1	chr16Lx215466253	ProperStrand	1	chr16	15467749	15467839	LINE	Lx2	L1	chr16Lx215467637	ProperStrand	1	1	-inf
chr17	39846671	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	142466776	142466876	protein_coding	Kif16b	intron	ENSMUSG00000038844	ProperStrand	1	1	-inf
chr19	60830155	60830245	SINE	MIR3	MIR	chr19MIR360830101	NonProperStrand	1	chr10	3134808	3134888	protein_coding	Cnksr3	utr5	ENSMUSG00000015202	NonProperStrand	1	1	-inf
chr11	6620318	6620418	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr18	35557043	35557098	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-5.7182
chr16	23111618	23111650	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr16	35981617	35981652	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-4.2137
chr14	75847904	75848016	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr2	144290628	144290647	pseudogene	Zfp133-ps	.	ENSMUSG00000083674	ProperStrand	2	1	-13.0444
chr10	98780358	98780438	LINE	L1MA4A	L1	chr10L1MA4A98780276	NonProperStrand	1	chr10	98780199	98780289	LTR	MLT1E1	MaLR	chr10MLT1E198780092	NonProperStrand	1	1	-inf
chr7	113250034	113250052	LINE	L1_Rod	L1	chr7L1_Rod113249983	NonProperStrand	1	chr17	39847801	39847920	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr12	100753478	100753558	SINE	B1_Mur2	Alu	chr12B1_Mur2100753482	NonProperStrand	1	chr12	100753682	100753772	SINE	B4	B4	chr12B4100753691	NonProperStrand	1	1	-inf
chr11	119887054	119887071	protein_coding	Aatk	intron	ENSMUSG00000025375	NonProperStrand	2	chr5	114852005	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-10.8185
chr13	116597090	116597180	Other	RMER1B	Other	chr13RMER1B116596689	ProperStrand	1	chr13	116597462	116597542	Other	RMER1B	Other	chr13RMER1B116597282	ProperStrand	1	1	-inf
chr8	100760420	100760510	LINE	L1_Mus1	L1	chr8L1_Mus1100760230	ProperStrand	1	chr8	100760684	100760764	LTR	RMER20B	ERVK	chr8RMER20B100760702	ProperStrand	1	1	-inf
chr10	51882929	51883019	protein_coding	Ros1	intron	ENSMUSG00000019893	ProperStrand	2	chr8	3390104	3390184	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	NonProperStrand	4	1	-19.9190
chr14	61295354	61295372	protein_coding	Spata13	intron	ENSMUSG00000021990	ProperStrand	3	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-8.9012
chr17	39847611	39847648	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	57783766	57783829	lincRNA	Gm12249	exon	ENSMUSG00000086666	NonProperStrand	2	1	-6.4812
chrX	102831183	102831273	SINE	B2_Mm2	B2	chrXB2_Mm2102831080	NonProperStrand	2	chrX	102831437	102831517	SINE	B4	B4	chrXB4102831412	ProperStrand	2	2	-inf
chr7	109520119	109520147	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr12	105031311	105031348	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-3.5916
chr2	130276235	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr2	158356456	158359930	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	4	-9.3317
chr10	11166608	11166706	protein_coding	Epm2a	intron	ENSMUSG00000055493	ProperStrand	4	chr10	10877628	10877647	protein_coding	Shprh	intron	ENSMUSG00000090112	NonProperStrand	3	1	-18.9508
chr17	39846353	39847125	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr19	8888541	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	20	-6.7707
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	61056409	61056436	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	9	1	-3.8922
chrX	160166182	160166272	SINE	ID_B1	B4	chrXID_B1160166070	NonProperStrand	1	chrX	160166036	160166116	Unknown	YREP_Mm	Unknown	chrXYREP_Mm160166055	ProperStrand	1	1	-inf
chr10	23785352	23785404	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr12	85638836	85638925	protein_coding	Ptgr2	intron	ENSMUSG00000072946	ProperStrand	3	1	-9.2859
chr1	136931768	136931848	protein_coding	Lgr6	intron	ENSMUSG00000042793	ProperStrand	2	chr2	138290717	138290807	protein_coding	Btbd3	intron	ENSMUSG00000062098	ProperStrand	2	1	-21.5566
chr5	146261280	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr10	81182002	81182038	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	3	1	-12.0173
chr17	83949124	83949204	LINE	L1MC4a	L1	chr17L1MC4a83949123	ProperStrand	1	chr17	83949324	83949414	SINE	B3A	B2	chr17B3A83949265	ProperStrand	1	1	-inf
chr17	39846353	39847155	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	123461793	123462190	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	57	-6.8345
chr8	98784070	98784150	LINE	L1Md_F3	L1	chr8L1Md_F398782079	NonProperStrand	2	chr8	98784207	98784298	LTR	IAPEY2_LTR	ERVK	chr8IAPEY2_LTR98784217	NonProperStrand	2	2	-inf
chr11	109011812	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	132974183	132974201	protein_coding	Slc9a1	intron	ENSMUSG00000028854	ProperStrand	8	1	-4.1268
chr17	39846471	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	134139379	134139395	SINE	PB1D10	Alu	chr5PB1D10134139307	NonProperStrand	1	1	-inf
chr10	23785399	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr12	119206440	119206466	protein_coding	Dnahc11	intron	ENSMUSG00000018581	NonProperStrand	5	1	-8.0893
chr15	98920535	98920625	Simple_repeat	(CTGGGG)n	Simple_repeat	chr15(CTGGGG)n98920528	NonProperStrand	1	chr3	96578245	96578325	protein_coding	Rnf115	intron	ENSMUSG00000028098	NonProperStrand	3	1	-inf
chr17	39847977	39848019	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chrX	73230113	73230130	Simple_repeat	(TTTG)n	Simple_repeat	chrX(TTTG)n73230116	ProperStrand	1	1	-inf
chr2	71383675	71383765	protein_coding-noncoding	Dlx2	utr3	ENSMUSG00000023391	NonProperStrand	1	chr2	71383405	71383485	protein_coding	Dlx2	intron	ENSMUSG00000023391	NonProperStrand	1	1	-inf
chrX	87238359	87238394	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr17	34952012	34952075	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-6.3372
chr6	26476708	26476788	LINE	L1_Mur3	L1	chr6L1_Mur326476671	ProperStrand	1	chr6	26476817	26476907	LTR	RLTR15	ERVK	chr6RLTR1526476794	ProperStrand	1	1	-inf
chr14	53912548	53912568	DNA	URR1B	MER1_type	chr14URR1B53912533	ProperStrand	1	chr17	39847454	39847544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr4	86985246	86985262	SINE	B3	B2	chr4B386985233	ProperStrand	5	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-12.9401
chr16	18240748	18240844	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr17	12919662	12919718	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	1	-8.7375
chr4	43348015	43348033	protein_coding	Atp8b5	intron	ENSMUSG00000028457	ProperStrand	5	chr16	23110837	23110863	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.3911
chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	6	chr4	107185823	107185848	protein_coding	Glis1	intron	ENSMUSG00000034762	ProperStrand	4	1	-17.3471
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	1	-3.6500
chr13	44869592	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr12	58761969	58761985	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	1	-5.6660
chrX	159337931	159337976	LINE	Lx9	L1	chrXLx9159337334	NonProperStrand	1	chr17	39846759	39846781	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr17	39846807	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	46750451	46750548	SINE	B4A	B4	chr13B4A46750473	NonProperStrand	1	1	-inf
chr9	75829715	75829733	lincRNA	Gm16662	intron	ENSMUSG00000085159	ProperStrand	1	chr15	102411863	102411961	protein_coding	Atf7	intron	ENSMUSG00000052414	NonProperStrand	3	1	-inf
chr18	35557081	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr13	49684382	49684428	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-5.3137
chr17	34899731	34903068	LINE	L1Md_F2	L1	chr17L1Md_F234899256	NonProperStrand	2	chr17	39847444	39847544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	2	-inf
chr13	52647461	52647551	SINE	B2_Mm2	B2	chr13B2_Mm252647456	ProperStrand	1	chr13	52647203	52647283	SINE	RSINE1	B4	chr13RSINE152647188	NonProperStrand	1	1	-inf
chr3	123507994	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr11	107012885	107012935	SINE	B1_Mm	Alu	chr11B1_Mm107012792	NonProperStrand	1	1	-inf
chr1	134560422	134560438	protein_coding	Nfasc	intron	ENSMUSG00000026442	ProperStrand	1	chr11	113901593	113901611	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	1	-inf
chr17	39847486	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	134329184	134329201	protein_coding	Dstyk	intron	ENSMUSG00000042046	NonProperStrand	3	1	-5.4090
chr17	39848598	39848666	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr8	95746115	95746183	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-4.8489
chr13	79765813	79765903	LINE	L1_Mus4	L1	chr13L1_Mus479765329	ProperStrand	1	chr13	79765976	79766056	LINE	Lx4A	L1	chr13Lx4A79765974	NonProperStrand	1	1	-inf
chr11	109011851	109011873	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	89999709	89999730	protein_coding	Nrxn3	intron	ENSMUSG00000066392	ProperStrand	13	1	-3.1856
chr9	85456245	85456266	LINE	L1_Mus3	L1	chr9L1_Mus385455833	NonProperStrand	1	chr4	132309497	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr7	110046442	110046497	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr6	38092829	38093945	protein_coding	D630045J12Rik	exon	ENSMUSG00000063455	NonProperStrand	1	1	-inf
chr4	49063207	49063287	LINE	L1_Mus4	L1	chr4L1_Mus449062841	NonProperStrand	1	chr4	49063450	49063540	LTR	ORR1C1	MaLR	chr4ORR1C149063361	NonProperStrand	1	1	-inf
chr13	44869945	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr19	8969173	8969222	protein_coding	Ints5	intron	ENSMUSG00000071652	ProperStrand	2	1	-9.9728
chr16	18240719	18240845	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr8	13876096	13876121	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	2	-12.8599
chr4	132352895	132352984	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr13	97190546	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	5	-6.1992
chr8	120736751	120736841	LINE	L1Md_F2	L1	chr8L1Md_F2120733204	NonProperStrand	1	chr8	120737021	120737101	LINE	L1Md_F3	L1	chr8L1Md_F3120736869	NonProperStrand	1	1	-inf
chr12	85343098	85343180	LTR	RMER19C	ERVK	chr12RMER19C85342690	NonProperStrand	1	chr17	39846630	39846703	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr5	110692073	110692164	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	chr7	28351536	28351597	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-7.7895
chr4	43492952	43493052	SINE	B3	B2	chr4B343492960	NonProperStrand	40	chr2	5379278	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.0364
chrX	87238364	87238399	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr17	39843342	39843437	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	1	-5.1358
chr18	9877354	9877434	protein_coding	Colec12	utr3	ENSMUSG00000036103	ProperStrand	3	chr3	35664454	35664544	protein_coding	Atp11b	intron	ENSMUSG00000037400	ProperStrand	3	1	-19.6922
chr7	69692298	69692388	LINE	L1_Mus3	L1	chr7L1_Mus369692223	NonProperStrand	1	chr7	69692650	69692730	LINE	L1_Mus3	L1	chr7L1_Mus369692575	NonProperStrand	1	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr11	109012016	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	1	-6.2281
chr4	46153106	46155755	protein_coding	Ncbp1	intron	ENSMUSG00000028330	ProperStrand	3	chr16	24984418	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	1	-14.9679
chr5	121205007	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr16	23111394	23111432	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-3.9960
chr9	120130415	120130434	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr4	137549990	137550033	protein_coding	Eif4g3	utr5	ENSMUSG00000028760	ProperStrand	13	1	-8.0322
chr6	83420457	83420537	LTR	MT2B	ERVL	chr6MT2B83420412	NonProperStrand	1	chr6	83420207	83420297	LTR	MTB	MaLR	chr6MTB83420001	ProperStrand	1	1	-inf
chr17	39847507	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr15	58492602	58492621	protein_coding	Fer1l6	intron	ENSMUSG00000037106	NonProperStrand	6	1	-3.8783
chr8	86839941	86840021	SINE	B1F	Alu	chr8B1F86839920	NonProperStrand	1	chr8	86840383	86840473	SINE	B1_Mus1	Alu	chr8B1_Mus186840342	NonProperStrand	1	1	-inf
chr11	48948251	48948268	protein_coding	Olfr56	exon	ENSMUSG00000040328	ProperStrand	6	chr16	57391496	57391621	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-13.1363
chr5	34151502	34151592	LTR	MTB_Mm	MaLR	chr5MTB_Mm34151503	NonProperStrand	1	chr5	34150989	34151069	SINE	B2_Mm2	B2	chr5B2_Mm234150969	NonProperStrand	1	1	-inf
chr17	39847445	39847508	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr18	10052136	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	ProperStrand	1	1	-inf
chr17	39846784	39846800	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	7211039	7211061	protein_coding	Rbfox1	intron	ENSMUSG00000008658	ProperStrand	3	1	-5.9338
chr14	63462655	63462675	protein_coding	Wdfy2	intron	ENSMUSG00000014547	ProperStrand	7	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-6.9733
chr11	109011785	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	44492934	44496303	protein_coding	Boc	intron	ENSMUSG00000022687	ProperStrand	4	1	-5.5999
chr17	39846407	39847101	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr18	35554490	35557228	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	10	-3.5326
chr17	35384410	35384490	protein_coding	Ddx39b	intron	ENSMUSG00000019432	ProperStrand	5	chr18	16868397	16868487	protein_coding	Cdh2	intron	ENSMUSG00000024304	ProperStrand	1	1	-inf
chr1	122357191	122357230	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr16	94125523	94125539	protein_coding	Sim2	intron	ENSMUSG00000062713	ProperStrand	12	1	-8.6678
chr9	31554101	31554191	SINE	B3	B2	chr9B331554114	NonProperStrand	1	chr9	31800933	31801013	SINE	B3A	B2	chr9B3A31800888	NonProperStrand	1	1	-inf
chr3	32691478	32691568	LINE	L1_Mus2	L1	chr3L1_Mus232691473	ProperStrand	1	chr3	32691090	32691170	LTR	ORR1D1-int	MaLR	chr3ORR1D1-int32689941	NonProperStrand	1	1	-inf
chr9	123462082	123462118	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr8	123103054	123103077	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	13	1	-4.0251
chr11	109012011	109012045	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr13	44869580	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-3.0229
chr7	109520120	109520147	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr6	3955227	3955243	protein_coding	Gng11	intron	ENSMUSG00000032766	NonProperStrand	2	1	-10.7680
chr16	51551626	51551716	DNA	URR1B	MER1_type	chr16URR1B51551513	NonProperStrand	1	chr16	51551184	51551264	LTR	RMER19C	ERVK	chr16RMER19C51550836	ProperStrand	1	1	-inf
chr2	156308730	156308820	protein_coding	Epb4.1l1	intron	ENSMUSG00000027624	NonProperStrand	4	chr2	156387425	156387505	protein_coding	0610011L14Rik	intron	ENSMUSG00000027628	NonProperStrand	2	1	-19.9239
chr17	39846462	39846490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	144266059	144266075	SINE	B1_Mur1	Alu	chr2B1_Mur1144266055	ProperStrand	1	1	-inf
chr14	46358986	46359066	LTR	ORR1E	MaLR	chr14ORR1E46358945	ProperStrand	1	chr14	46358699	46358789	LTR	RLTR17	ERVK	chr14RLTR1746358431	NonProperStrand	1	1	-inf
chr18	35557085	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr5	17776752	17776786	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	1	-7.7150
chr5	146261285	146261303	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr17	50920583	50920599	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	1	-7.2775
chr11	69953682	69953762	LINE	L1M2	L1	chr11L1M269953492	NonProperStrand	1	chr11	69953393	69953483	SINE	ID2	ID	chr11ID269953390	NonProperStrand	1	1	-inf
chr5	42615352	42615432	LTR	MLT1A0	MaLR	chr5MLT1A042615261	NonProperStrand	1	chr5	42615499	42615589	LTR	MTC	MaLR	chr5MTC42615525	ProperStrand	1	1	-inf
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr5	121205023	121205142	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	3	-4.9857
chr10	88475387	88475403	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	11	chr10	89789672	89789696	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	14	1	-13.3326
chr4	132309465	132310029	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr17	24719675	24719796	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	4	-4.6446
chr5	146261122	146261232	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr2	32963312	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	7	-6.8253
chr17	39846818	39846844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr6	120037341	120037450	SINE	B2_Mm1a	B2	chr6B2_Mm1a120037293	NonProperStrand	1	1	-inf
chr4	41439285	41439375	LINE	L1MB8	L1	chr4L1MB841439140	ProperStrand	1	chr4	41439483	41439563	SINE	B3	B2	chr4B341439476	NonProperStrand	1	1	-inf
chr10	23785416	23785442	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chrX	104283214	104283230	Unknown	MamRep605	Unknown	chrXMamRep605104283126	NonProperStrand	2	1	-10.3808
chr1	39548802	39548838	LINE	Lx5	L1	chr1Lx539548764	NonProperStrand	5	chr2	90395136	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-6.6729
chrX	52546587	52546677	LINE	L1VL4	L1	chrXL1VL452546309	NonProperStrand	1	chrX	52546875	52546955	LINE	MusHAL1	L1	chrXMusHAL152546781	NonProperStrand	1	1	-inf
chr7	110046445	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr15	86194844	86194944	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-7.7572
chr9	120130415	120130539	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr9	123461843	123462107	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	6	-4.1218
chr8	104510003	104510083	LINE	L1_Rod	L1	chr8L1_Rod104509928	NonProperStrand	1	chr8	104510281	104510371	LINE	Lx8	L1	chr8Lx8104510279	NonProperStrand	1	1	-inf
chr17	39846816	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr19	8888607	8888676	protein_coding	Ttc9c	intron	ENSMUSG00000071660	NonProperStrand	3	1	-11.8956
chr11	118393252	118393281	protein_coding	Rbfox3	intron	ENSMUSG00000025576	ProperStrand	6	chr9	64175062	64175113	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	9	1	-15.5589
chr9	120130455	120130504	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-4.2185
chr17	39847611	39847701	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr16	57391570	57391650	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-7.4399
chr17	4082485	4082575	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	chr1	102256211	102256291	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	NonProperStrand	8	1	-13.0762
chr2	130276254	130276282	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr14	13263215	13263231	protein_coding	Cadps	intron	ENSMUSG00000054423	NonProperStrand	4	1	-9.6304
chr7	110046442	110046476	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr11	106501242	106501320	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-3.8728
chr15	102844391	102844411	protein_coding	Hoxc5	utr5	ENSMUSG00000022485	NonProperStrand	1	chr12	109646706	109649198	protein_coding	Eml1	intron	ENSMUSG00000058070	NonProperStrand	4	1	-inf
chr11	90578891	90578981	LINE	L1ME1	L1	chr11L1ME190578906	NonProperStrand	2	chr11	90578760	90578840	LTR	MTC	MaLR	chr11MTC90578579	ProperStrand	2	2	-inf
chr12	48101466	48101556	LINE	L1Md_F3	L1	chr12L1Md_F348101153	ProperStrand	1	chr12	48101759	48101839	LINE	L1_Rod	L1	chr12L1_Rod48101645	NonProperStrand	1	1	-inf
chr17	28328335	28328425	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	3	chr9	123461822	123461884	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-7.1766
chr9	110281321	110281347	protein_coding	Scap	intron	ENSMUSG00000032485	NonProperStrand	6	chr3	108426925	108427317	protein_coding	Wdr47	intron	ENSMUSG00000040389	ProperStrand	2	1	-19.1249
chr12	87437681	87437785	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr2	90395141	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	3	-4.6295
chr4	73538291	73538371	LTR	ORR1A4-int	MaLR	chr4ORR1A4-int73537639	ProperStrand	1	chr4	73538567	73538657	LTR	RMER19A	ERVK	chr4RMER19A73538395	NonProperStrand	1	1	-inf
chr6	87907375	87907465	LINE	Lx	L1	chr6Lx87907291	NonProperStrand	1	chr6	87904887	87905224	LTR	RLTR20A	ERVK	chr6RLTR20A87904743	ProperStrand	1	1	-inf
chr7	66459542	66459622	LTR	IAPEz-int	ERVK	chr7IAPEz-int66459511	ProperStrand	1	chr7	66459221	66459311	LTR	IAPLTR1a_Mm	ERVK	chr7IAPLTR1a_Mm66459155	ProperStrand	2	1	-inf
chr15	76172898	76172959	SINE	B1_Mm	Alu	chr15B1_Mm76172912	ProperStrand	1	chr12	87437718	87437818	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	1	-inf
chr15	84994716	84994806	SINE	B1_Mus2	Alu	chr15B1_Mus284994691	NonProperStrand	1	chr15	84994502	84994582	SINE	B4A	B4	chr15B4A84994415	ProperStrand	1	1	-inf
chr7	109520119	109521409	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr13	97190546	97190625	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	9	-8.1503
chr2	90395144	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	3	-8.9935
chr17	39847166	39847206	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr11	101817465	101817485	antisense	4930417O22Rik	.	ENSMUSG00000071818	ProperStrand	1	1	-inf
chr17	39846784	39846803	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	94327348	94327369	protein_coding	Cacna1g	intron	ENSMUSG00000020866	ProperStrand	3	1	-5.9338
chr5	146261267	146261317	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr9	120130448	120130509	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-3.7872
chr11	109011661	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	32963283	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	15	-5.7794
chr16	18240724	18240824	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr7	109520118	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	2	-8.3714
chr6	5959867	5959957	protein_coding	Dync1i1	intron	ENSMUSG00000029757	NonProperStrand	2	chr6	148945814	148945894	protein_coding	Dennd5b	intron	ENSMUSG00000030313	NonProperStrand	3	1	-20.8207
chr1	151504390	151504480	LINE	L1MA6	L1	chr1L1MA6151504385	ProperStrand	1	chr1	151504289	151504369	LINE	L1_Mus2	L1	chr1L1_Mus2151503882	ProperStrand	1	1	-inf
chr14	73815430	73815520	LINE	L1MB4	L1	chr14L1MB473815452	NonProperStrand	1	chr9	26739830	26739910	LINE	MusHAL1	L1	chr9MusHAL126738471	NonProperStrand	1	1	-inf
chr13	101170369	101170449	SINE	B2_Mm2	B2	chr13B2_Mm2101170297	NonProperStrand	1	chr13	101170513	101170603	SINE	B2_Mm2	B2	chr13B2_Mm2101170500	ProperStrand	1	1	-inf
chr5	107131589	107131680	LTR	MTC	MaLR	chr5MTC107131419	ProperStrand	1	chr5	107131947	107132027	SINE	B2_Mm2	B2	chr5B2_Mm2107131920	NonProperStrand	1	1	-inf
chr2	32256031	32256154	protein_coding	Ptges2	intron	ENSMUSG00000026820	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr17	50731144	50731224	protein_coding	Plcl2	intron	ENSMUSG00000038910	ProperStrand	3	chr14	23497118	23497208	protein_coding	1700112E06Rik	intron	ENSMUSG00000063458	ProperStrand	11	2	-23.5249
chr10	23785346	23785413	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr19	8888597	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	4	-3.2551
chr2	26350523	26350542	protein_coding	Notch1	intron	ENSMUSG00000026923	ProperStrand	1	chr5	121205090	121205136	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-inf
chr4	132352896	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr16	23111377	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-5.0538
chr17	39846431	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	131598204	131598222	protein_coding	Epb4.1	intron	ENSMUSG00000028906	ProperStrand	4	1	-5.2608
chr11	62604548	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	5	chr17	34950952	34950994	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-12.3585
chr10	70407576	70407658	protein_coding	Bicc1	intron	ENSMUSG00000014329	NonProperStrand	7	chr10	70407988	70408079	protein_coding	Bicc1	exon	ENSMUSG00000014329	ProperStrand	3	2	-inf
chr14	75847945	75848011	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chrX	37082967	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	1	-4.7503
chr4	132309529	132309545	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	1	-4.1569
chr1	152041161	152041251	LINE	L1Md_F2	L1	chr1L1Md_F2152040786	NonProperStrand	1	chr1	152815944	152816024	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	13	1	-inf
chr17	39848457	39848579	LINE	L1Md_T	L1	chr17L1Md_T39848464	NonProperStrand	29	chr17	39848098	39848470	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	6	-27.9616
chr11	100481388	100481478	protein_coding	Dnajc7	utr5	ENSMUSG00000014195	ProperStrand	2	chr11	100481503	100481759	protein_coding	Nkiras2	intron	ENSMUSG00000017837	NonProperStrand	1	1	-inf
chr11	88657205	88657295	LINE	L1MC1	L1	chr11L1MC188657202	NonProperStrand	2	chr11	88657674	88657754	LINE	L1MC1	L1	chr11L1MC188657602	NonProperStrand	2	2	-inf
chr10	50058150	50058240	LINE	L1Md_F2	L1	chr10L1Md_F250057702	ProperStrand	1	chr10	50058506	50058586	LINE	Lx8	L1	chr10Lx850058338	ProperStrand	1	1	-inf
chr8	111055838	111055928	DNA	MER82	MER2_type	chr8MER82111055762	NonProperStrand	1	chr8	111055621	111055701	Low_complexity	GA-rich	Low_complexity	chr8GA-rich111055623	ProperStrand	1	1	-inf
chr11	29938994	29939084	LINE	L1Md_F2	L1	chr11L1Md_F229937111	ProperStrand	1	chr11	29939299	29939379	LINE	L1Md_F2	L1	chr11L1Md_F229939073	ProperStrand	1	1	-inf
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	74093614	74093647	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	1	-3.5018
chr17	35162571	35162648	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr14	7948614	7950318	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	13	1	-9.0561
chr9	123462082	123462172	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr13	46767577	46767652	protein_coding	C78339	intron	ENSMUSG00000069237	NonProperStrand	10	2	-7.6947
chr9	123461854	123462042	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr7	28351037	28352223	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	4	-5.6707
chr19	47268039	47268131	protein_coding	Neurl1a	intron	ENSMUSG00000006435	NonProperStrand	4	chr17	35162575	35162655	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	1	-11.6138
chr11	109011747	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	69169161	69169179	protein_coding	Ank3	intron	ENSMUSG00000069601	ProperStrand	12	1	-3.3361
chr11	55482699	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr2	5379266	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	2	-2.9966
chrX	123103877	123103896	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	8	chr7	109520134	109520197	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-7.4541
chr11	93951913	93951994	protein_coding	Spag9	exon	ENSMUSG00000020859	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr8	4621666	4621745	LINE	L1_Mur3	L1	chr8L1_Mur34621466	ProperStrand	1	chr1	182313900	182313968	protein_coding	Itpkb	intron	ENSMUSG00000038855	ProperStrand	2	1	-inf
chr4	82464687	82464707	protein_coding	Zdhhc21	intron	ENSMUSG00000028403	NonProperStrand	1	chr13	49195964	49196047	protein_coding	Wnk2	intron	ENSMUSG00000037989	ProperStrand	2	1	-inf
chr5	146835143	146835220	LINE	L1_Mur2	L1	chr5L1_Mur2146834958	ProperStrand	7	chr7	110046444	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	1	-10.5589
chr4	16499593	16499683	LINE	Lx9	L1	chr4Lx916499366	NonProperStrand	1	chr4	16499274	16499354	SINE	B3	B2	chr4B316499253	ProperStrand	1	1	-inf
chr5	146261280	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr18	35557176	35557228	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-3.4931
chr18	35557034	35624204	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr13	44869576	44869712	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	5	-6.1753
chr6	135376562	135376642	LINE	L1Md_A	L1	chr6L1Md_A135376020	NonProperStrand	1	chr6	135279713	135279803	LINE	Lx2	L1	chr6Lx2135279052	ProperStrand	1	1	-inf
chr16	51673968	51674048	LINE	Lx2	L1	chr16Lx251673989	ProperStrand	1	chr16	51674139	51674228	LINE	Lx2	L1	chr16Lx251674101	ProperStrand	1	1	-inf
chr14	55540458	55540474	protein_coding	Efs	intron	ENSMUSG00000022203	ProperStrand	8	chr18	35557132	35557156	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-8.7316
chr12	65314796	65314886	LINE	L1Md_F2	L1	chr12L1Md_F265314389	ProperStrand	1	chr12	65315117	65315197	LINE	L1Md_F2	L1	chr12L1Md_F265314865	NonProperStrand	1	1	-inf
chr5	101270967	101270984	lincRNA	4930458D05Rik	intron	ENSMUSG00000087611	ProperStrand	1	chr9	123461928	123462009	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr13	44869577	44869641	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr19	29612464	29612480	protein_coding	C030046E11Rik	intron	ENSMUSG00000038658	ProperStrand	11	1	-6.0064
chr17	77427109	77427125	LINE	L1Md_T	L1	chr17L1Md_T77426092	NonProperStrand	1	chr16	23110866	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr16	35981615	35981643	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr12	17404814	17404831	protein_coding	Nol10	intron	ENSMUSG00000061458	NonProperStrand	1	1	-inf
chr9	123462079	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr9	65214904	65214948	protein_coding	Gm514	intron	ENSMUSG00000086228	NonProperStrand	1	1	-inf
chr11	82943617	82943635	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	3	chr4	132309475	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-8.6506
chr18	35557177	35557219	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr8	95746100	95746195	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-4.7663
chr14	63462659	63462676	protein_coding	Wdfy2	intron	ENSMUSG00000014547	ProperStrand	7	chr18	35557030	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-9.0177
chr11	55482693	55482712	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr9	7934573	7934597	protein_coding	Yap1	exon	ENSMUSG00000053110	ProperStrand	1	1	-inf
chr2	30087146	30087165	LTR	MURVY-int	ERV1	chr2MURVY-int30083619	ProperStrand	1	chr2	29936204	29936222	protein_coding	Pkn3	intron	ENSMUSG00000026785	NonProperStrand	3	1	-inf
chr13	86480486	86480576	LTR	RodERV21-int	ERV1	chr13RodERV21-int86480502	ProperStrand	1	chr3	50173871	50173951	protein_coding	Slc7a11	utr3	ENSMUSG00000027737	ProperStrand	3	1	-inf
chr11	109011810	109011858	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	83584848	83584868	protein_coding	Heatr6	intron	ENSMUSG00000000976	NonProperStrand	4	1	-5.5999
chr7	13025037	13025347	LINE	L1MB8	L1	chr7L1MB813025199	ProperStrand	1	chr7	13025360	13025664	SINE	B3A	B2	chr7B3A13025370	ProperStrand	1	1	-inf
chr5	121205018	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr17	24720804	24720901	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	3	-3.1902
chr2	71089842	71089858	protein_coding	Dync1i2	intron	ENSMUSG00000027012	NonProperStrand	4	chr14	29119134	29119156	protein_coding	Erc2	intron	ENSMUSG00000040640	NonProperStrand	10	1	-16.2487
chr1	161035404	161035457	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr4	132309935	132310020	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-3.6318
chrX	17835990	17836070	protein_coding-noncoding	Kdm6a	utr5	ENSMUSG00000037369	ProperStrand	1	chrX	17836208	17836298	protein_coding	Kdm6a	intron	ENSMUSG00000037369	ProperStrand	2	1	-inf
chr17	39846462	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	90842201	90842220	protein_coding	Celf1	intron	ENSMUSG00000005506	NonProperStrand	2	1	-7.0123
chr1	177880512	177880592	LINE	L1MA4A	L1	chr1L1MA4A177880530	ProperStrand	1	chr1	177880379	177880469	SINE	B3	B2	chr1B3177880330	ProperStrand	1	1	-inf
chr1	113842344	113842434	LINE	Lx5	L1	chr1Lx5113842007	NonProperStrand	1	chr1	113842709	113842789	LINE	Lx5	L1	chr1Lx5113842345	NonProperStrand	1	1	-inf
chr4	132352918	132352952	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chrX	147009458	147009474	protein_coding	Apex2	intron	ENSMUSG00000025269	ProperStrand	4	1	-10.3408
chr10	23785346	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr9	123461884	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	12	-3.6345
chr6	131380326	131380389	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr4	132352955	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-6.3825
chr5	74093599	74093650	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	chr2	5379230	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-5.5219
chr2	90395140	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr3	32365470	32365560	protein_coding	Pik3ca	utr3	ENSMUSG00000027665	ProperStrand	1	1	-inf
chr17	24528482	24528516	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	10	chr19	17223200	17223216	protein_coding	Prune2	intron	ENSMUSG00000039126	NonProperStrand	3	1	-16.9468
chr9	36424384	36424474	LINE	L1Md_A	L1	chr9L1Md_A36424219	ProperStrand	1	chr9	36424094	36424174	LINE	L1Md_F	L1	chr9L1Md_F36421309	ProperStrand	1	1	-inf
chr16	4143974	4144064	protein_coding	Crebbp	intron	ENSMUSG00000022521	NonProperStrand	4	chr19	9034451	9034531	protein_coding	Tut1	intron	ENSMUSG00000071645	ProperStrand	1	1	-inf
chr6	39501747	39501827	protein_coding	Dennd2a	intron	ENSMUSG00000038456	NonProperStrand	1	chr9	44767078	44767168	protein_coding	Ube4a	intron	ENSMUSG00000059890	NonProperStrand	1	1	-inf
chr5	146261156	146261194	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr19	49117686	49117705	Simple_repeat	(TAGA)n	Simple_repeat	chr19(TAGA)n49117677	NonProperStrand	1	1	-inf
chr18	10052130	10052152	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr2	31032075	31032099	protein_coding	Gpr107	intron	ENSMUSG00000000194	NonProperStrand	1	1	-inf
chr2	67167899	67167989	antisense	Gm13599	.	ENSMUSG00000087043	ProperStrand	2	chr12	67667918	67667998	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-15.4042
chr14	19278164	19278206	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	4	chr5	146261170	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-8.1425
chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-3.2797
chr16	23111315	23111755	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr18	35557081	35557181	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	2	-5.1482
chr2	58083752	58083770	LINE	L1_Mus3	L1	chr2L1_Mus358081863	ProperStrand	7	chr13	44869576	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-11.4271
chr16	91729459	91729478	protein_coding	Atp5o	intron	ENSMUSG00000022956	NonProperStrand	5	chr2	90395158	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-6.6729
chr17	39847636	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	24196852	24196921	protein_coding	Nlrp5	intron	ENSMUSG00000015721	NonProperStrand	2	1	-6.4812
chr10	69789811	69789901	LTR	ORR1A3	MaLR	chr10ORR1A369789622	ProperStrand	1	chr10	70897885	70897965	SINE	B4A	B4	chr10B4A70897736	ProperStrand	1	1	-inf
chr18	33795183	33795262	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr5	146261240	146261280	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	1	-9.4443
chr13	97190541	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr4	133705561	133705577	protein_coding	Gm17345	intron	ENSMUSG00000090954	ProperStrand	2	1	-9.9068
chr2	121936108	121936198	protein_coding	Spg11	intron	ENSMUSG00000033396	NonProperStrand	3	chr5	140433451	140433531	protein_coding	Elfn1	intron	ENSMUSG00000048988	NonProperStrand	2	1	-20.7434
chr13	104050773	104050789	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	8	chr13	44869949	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.6679
chr9	21367882	21367900	protein_coding	Carm1	intron	ENSMUSG00000032185	NonProperStrand	2	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-13.1695
chr4	132352441	132352808	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr9	123461825	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	10	-6.0102
chr8	13416896	13416913	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	11	chr16	19883803	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	2	-14.6704
chr11	109011810	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	26325662	26325678	protein_coding	Notch1	intron	ENSMUSG00000026923	NonProperStrand	2	1	-7.3577
chr16	29676753	29676843	SINE	B1_Mur4	Alu	chr16B1_Mur429676772	ProperStrand	1	chr16	29677063	29677143	SINE	B3	B2	chr16B329676909	NonProperStrand	1	1	-inf
mmu-miR-6240	1	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr3	86100544	86100609	protein_coding	Lrba	intron	ENSMUSG00000028080	ProperStrand	13	1	-9.2971
chr15	83795758	83795838	protein_coding-noncoding	Efcab6	utr3	ENSMUSG00000022441	ProperStrand	1	chr15	83795438	83795528	protein_coding	Efcab6	intron	ENSMUSG00000022441	ProperStrand	7	1	-inf
chr5	146185326	146185406	LINE	L1Md_F2	L1	chr5L1Md_F2146185150	ProperStrand	1	chr5	146185695	146185785	LINE	Lx2	L1	chr5Lx2146185569	ProperStrand	1	1	-inf
chr10	23785344	23785786	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr17	39847332	39848042	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	34	-9.6255
chr7	109520216	109520240	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr11	65529494	65529510	protein_coding	Map2k4	intron	ENSMUSG00000033352	ProperStrand	4	1	-8.9823
mmu-miR-1912-5p	0	17	miRNA	mmu-miR-1912-5p	.	mmu-miR-1912-5p	NonProperStrand	9	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	1	-14.6838
chr2	27216965	27217045	protein_coding	Vav2	intron	ENSMUSG00000009621	NonProperStrand	4	chr2	76970602	76970692	protein_coding	Ccdc141	intron	ENSMUSG00000044033	NonProperStrand	6	1	-17.3470
chr17	39847040	39847094	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr19	23433092	23433113	protein_coding	Mamdc2	intron	ENSMUSG00000033207	ProperStrand	2	1	-12.9931
chr3	77476966	77477056	LINE	L1Md_A	L1	chr3L1Md_A77471202	NonProperStrand	1	chr3	77480719	77480799	LTR	ORR1A2-int	MaLR	chr3ORR1A2-int77480164	ProperStrand	1	1	-inf
chr13	98039755	98039845	SINE	B3	B2	chr13B398039755	NonProperStrand	1	chr13	97177147	97177227	protein_coding	Poc5	intron	ENSMUSG00000021671	NonProperStrand	1	1	-inf
chr12	99645568	99645662	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr15	34440842	34440887	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-5.1123
chr10	105238488	105238519	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	chr2	32963383	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-4.5525
chr9	123461957	123461974	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr7	83793334	83793350	protein_coding	Agbl1	intron	ENSMUSG00000025754	NonProperStrand	9	1	-4.7558
chr11	91546268	91546358	LINE	L1MA6	L1	chr11L1MA691546192	ProperStrand	1	chr11	91546033	91546113	SINE	B3	B2	chr11B391545925	ProperStrand	1	1	-inf
chr2	90395158	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr11	77865631	77865647	protein_coding	Flot2	intron	ENSMUSG00000061981	NonProperStrand	1	1	-inf
chr19	13565033	13565113	LINE	L1_Mur1	L1	chr19L1_Mur113564800	ProperStrand	2	chr19	13565303	13565393	LINE	L1_Mus1	L1	chr19L1_Mus113565233	NonProperStrand	2	2	-inf
chr17	39846596	39846630	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	79740330	79740348	protein_coding	Dazap1	exon	ENSMUSG00000069565	NonProperStrand	1	1	-inf
chr8	108399867	108399885	protein_coding	Nutf2	intron	ENSMUSG00000008450	NonProperStrand	1	chr8	123102700	123102874	protein_coding	Gins2	utr3	ENSMUSG00000031821	ProperStrand	1	1	-inf
chr17	39846467	39846485	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	81012138	81012156	protein_coding	Pdgfc	intron	ENSMUSG00000028019	NonProperStrand	2	1	-7.0123
chr17	39847676	39847712	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	127095611	127095652	protein_coding	Stat6	intron	ENSMUSG00000002147	NonProperStrand	1	1	-inf
chr5	66117358	66117448	SINE	B1_Mur1	Alu	chr5B1_Mur166117336	NonProperStrand	1	chr5	66117069	66117149	SINE	B3A	B2	chr5B3A66117075	NonProperStrand	1	1	-inf
chr2	84602678	84602768	LTR	ORR1D1	MaLR	chr2ORR1D184602629	NonProperStrand	1	chr2	84602935	84603015	LTR	ORR1D1	MaLR	chr2ORR1D184602914	NonProperStrand	1	1	-inf
chr2	158625290	158625306	protein_coding	Dhx35	intron	ENSMUSG00000027655	NonProperStrand	6	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.5517
chr11	6528044	6528152	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr2	158356480	158359894	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	2	-7.0163
chr2	28786539	28786619	SINE	B3	B2	chr2B328786412	ProperStrand	1	chr2	28598818	28598908	protein_coding	Ak8	intron	ENSMUSG00000026807	ProperStrand	2	1	-inf
chr7	29446448	29446536	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr13	49684326	49684372	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-9.6086
chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	15	1	-11.4946
chr10	23785361	23785429	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr17	12919624	12919664	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	56	1	-3.2390
chr2	102829377	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	15	chr4	45346527	45346554	protein_coding	Exosc3	intron	ENSMUSG00000028322	ProperStrand	6	1	-14.4884
chrX	96152537	96152581	LINE	Lx3C	L1	chrXLx3C96152168	ProperStrand	1	chrX	37082963	37082995	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	1	-inf
chr4	132309466	132310321	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr8	126944846	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	5	-6.7315
chrX	127542690	127542770	LTR	ORR1D1-int	MaLR	chrXORR1D1-int127542637	NonProperStrand	1	chrX	127542549	127542639	LTR	ORR1D1	MaLR	chrXORR1D1127542307	NonProperStrand	1	1	-inf
chr17	39847482	39847529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	83109835	83109851	protein_coding	1700003E16Rik	intron	ENSMUSG00000030030	ProperStrand	1	1	-inf
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr11	106501242	106501270	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-5.5921
chr10	23785398	23785462	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr19	29612464	29612480	protein_coding	C030046E11Rik	intron	ENSMUSG00000038658	ProperStrand	11	1	-6.4068
chr7	10701611	10701701	LINE	L1Md_F2	L1	chr7L1Md_F210700397	ProperStrand	1	chr7	11727803	11727883	LTR	MMVL30-int	ERV1	chr7MMVL30-int11726519	NonProperStrand	1	1	-inf
chr3	107882892	107882972	protein_coding-noncoding	Ampd2	utr3	ENSMUSG00000027889	ProperStrand	1	chr3	107882590	107882680	protein_coding	Ampd2	exon	ENSMUSG00000027889	ProperStrand	1	1	-inf
chr4	28892420	28892438	protein_coding	Epha7	utr3	ENSMUSG00000028289	ProperStrand	1	chr5	121205117	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-inf
chr2	168601393	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr13	97190551	97190571	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-4.7441
chr13	6600601	6602747	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	3	chr2	90395130	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.8617
chr7	128271778	128271798	protein_coding	Otoa	intron	ENSMUSG00000034990	ProperStrand	1	chr11	113901594	113901611	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	1	-inf
chr6	30666276	30666292	SINE	B3	B2	chr6B330666225	ProperStrand	1	chr5	146261242	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	1	-inf
chr5	117287492	117287543	LTR	MTC	MaLR	chr5MTC117287346	ProperStrand	1	chr16	23110867	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr11	109011828	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	65092517	65092534	protein_coding	Hpgds	intron	ENSMUSG00000029919	ProperStrand	1	1	-inf
chr7	110046443	110046468	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr3	9428345	9428363	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	9	1	-10.0213
chr8	107096425	107096441	Simple_repeat	(GAA)n	Simple_repeat	chr8(GAA)n107096251	NonProperStrand	1	chr6	115807974	115808074	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-inf
chr8	22199407	22199487	LINE	L1Md_F2	L1	chr8L1Md_F222199255	ProperStrand	1	chr9	123461838	123461928	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr17	39847325	39847345	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr6	47788110	47788154	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	4	1	-6.8874
chr11	109011746	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	15949473	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	2	-3.9352
chr3	71099495	71099575	LTR	ORR1A4-int	MaLR	chr3ORR1A4-int71099200	NonProperStrand	1	chr3	71098862	71098953	LTR	ORR1A4	MaLR	chr3ORR1A471098827	NonProperStrand	1	1	-inf
chr17	25820364	25820444	LTR	MTE2a	MaLR	chr17MTE2a25820334	ProperStrand	2	chr17	25820469	25820559	SINE	B1_Mus1	Alu	chr17B1_Mus125820468	NonProperStrand	2	2	-inf
chr11	109011693	109011715	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	3410873	3410893	protein_coding	Hspa14	intron	ENSMUSG00000051396	ProperStrand	1	1	-inf
chr3	31458683	31458702	LINE	L1Md_F2	L1	chr3L1Md_F231458416	NonProperStrand	4	chr9	15315200	15315268	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-9.0046
chr11	97781638	97781768	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr11	109011748	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	10	-6.5579
chr1	46123292	46123372	LTR	RLTR12B	ERVK	chr1RLTR12B46122832	ProperStrand	1	chr1	46123396	46123486	LTR	RLTR16	ERVK	chr1RLTR1646123408	ProperStrand	1	1	-inf
chr2	90395142	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	122768917	122768933	protein_coding	Sox6	intron	ENSMUSG00000051910	ProperStrand	16	1	-4.2709
chr12	59289046	59289126	LINE	L1Md_T	L1	chr12L1Md_T59289059	ProperStrand	1	chr12	59288507	59288597	LINE	Lx8	L1	chr12Lx859286919	ProperStrand	1	1	-inf
chr5	146834996	146835076	LINE	L1_Mur2	L1	chr5L1_Mur2146834958	ProperStrand	7	chrX	151215263	151215353	LTR	MTD	MaLR	chrXMTD151215217	NonProperStrand	1	1	-inf
chr17	32883525	32883542	LTR	RLTR16	ERVK	chr17RLTR1632883085	NonProperStrand	1	mmu-miR-690	0	20	miRNA	mmu-miR-690	.	mmu-miR-690	ProperStrand	1	1	-inf
chr18	87666446	87666536	LINE	L1Md_F2	L1	chr18L1Md_F287666033	NonProperStrand	1	chr4	145830783	145830863	LTR	RLTR6-int	ERV1	chr4RLTR6-int145825958	NonProperStrand	1	1	-inf
chr3	75621451	75621469	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	4	chr17	39846478	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-5.2608
chr5	146260994	146261016	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr1	34815003	34815022	protein_coding	Arhgef4	intron	ENSMUSG00000037509	NonProperStrand	6	1	-7.2355
chr12	116391681	116391771	LINE	L1Md_F2	L1	chr12L1Md_F2116391451	ProperStrand	1	chr12	116395556	116395636	LINE	L1_Mur2	L1	chr12L1_Mur2116395462	ProperStrand	1	1	-inf
chr6	95066768	95066788	antisense	1700010K10Rik	.	ENSMUSG00000085413	ProperStrand	1	chr16	23110781	23110798	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-inf
chr5	104361704	104361784	LINE	L1M2	L1	chr5L1M2104361576	NonProperStrand	1	chr5	104361838	104361928	LINE	L1M2	L1	chr5L1M2104361805	NonProperStrand	1	1	-inf
chr13	57279664	57279754	LINE	Lx8	L1	chr13Lx857279595	ProperStrand	1	chr13	57279936	57280016	LINE	Lx8	L1	chr13Lx857279923	ProperStrand	1	1	-inf
chr17	39846459	39847153	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	132352441	132352857	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	13	-3.9860
chr14	50466052	50466115	LINE	L1Md_F2	L1	chr14L1Md_F250464365	NonProperStrand	5	chr13	112578632	112578661	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-8.0311
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	9852069	9852126	LTR	MTD	MaLR	chr10MTD9852057	ProperStrand	4	2	-9.6701
chr2	26733080	26733170	LTR	MTE2b	MaLR	chr2MTE2b26733090	ProperStrand	1	chr2	26732983	26733063	SINE	B1_Mur2	Alu	chr2B1_Mur226732959	NonProperStrand	1	1	-inf
chr1	96318053	96318133	LINE	L1VL4	L1	chr1L1VL496316928	ProperStrand	1	chr1	91683869	91683959	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	1	-inf
chr8	3803275	3803343	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	chr2	90395139	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-3.2797
chr17	24720819	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr16	56035808	56035850	protein_coding	Rg9mtd1	intron	ENSMUSG00000044763	ProperStrand	9	1	-7.4635
chr2	167232950	167233030	LINE	HAL1	L1	chr2HAL1167232857	NonProperStrand	1	chr2	167233136	167233226	SINE	RSINE1	B4	chr2RSINE1167233121	NonProperStrand	1	1	-inf
chr11	55482699	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr14	50466122	50466143	LINE	L1Md_F2	L1	chr14L1Md_F250464365	NonProperStrand	5	1	-11.1668
chr10	82763545	82763564	protein_coding	Slc41a2	intron	ENSMUSG00000034591	ProperStrand	2	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-13.5769
chr8	90993855	90993876	LINE	L1MA6	L1	chr8L1MA690993639	ProperStrand	5	chr5	24430099	24430141	protein_coding	Prkag2	intron	ENSMUSG00000028944	NonProperStrand	18	1	-14.5170
chr4	88208780	88208799	LINE	L1_Mur2	L1	chr4L1_Mur288208251	ProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr19	5287604	5287960	protein_coding	Sf3b2	exon	ENSMUSG00000024853	ProperStrand	2	chr6	148294672	148306004	protein_coding	Tmtc1	intron	ENSMUSG00000030306	NonProperStrand	4	1	-19.9190
chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	chr16	23110867	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.8853
chr4	149120028	149120046	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr5	121205007	121205135	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	5	-3.8074
chr15	72994490	72994570	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	4	chr17	86577762	86577852	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	10	1	-16.2487
chr7	31132543	31132584	LINE	L2	L2	chr7L231132535	ProperStrand	1	chr2	5379283	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr11	120596619	120596699	LTR	MTB	MaLR	chr11MTB120596573	NonProperStrand	1	chr11	120597008	120597098	LTR	MTB	MaLR	chr11MTB120596960	NonProperStrand	1	1	-inf
chr17	39847754	39847791	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	37770435	37770452	protein_coding	Dennd1a	intron	ENSMUSG00000035392	NonProperStrand	3	1	-5.4090
chr17	39846463	39846490	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	74435735	74435752	protein_coding	E130309D14Rik	intron	ENSMUSG00000069814	NonProperStrand	3	1	-5.9338
chr11	106501253	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr19	44114709	44114725	protein_coding	Erlin1	intron	ENSMUSG00000025198	ProperStrand	2	1	-11.9816
chr4	56897635	56897719	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	chr19	8888597	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	2	-7.4181
chr2	90395128	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr16	23110823	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	31	-14.4899
chr11	60209696	60209786	LTR	MTA_Mm	MaLR	chr11MTA_Mm60209639	ProperStrand	1	chr11	60209568	60209648	LTR	RMER15-int	ERVL	chr11RMER15-int60209540	NonProperStrand	1	1	-inf
chr12	110082761	110082841	SINE	B2_Mm2	B2	chr12B2_Mm2110082676	NonProperStrand	1	chr12	110082575	110082665	SINE	B3A	B2	chr12B3A110082490	NonProperStrand	1	1	-inf
chrX	147484294	147484384	protein_coding	Fgd1	intron	ENSMUSG00000025265	NonProperStrand	3	chr19	8888537	8888593	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-9.8520
chr17	39845714	39845851	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	43	chr17	39845857	39846036	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	NonProperStrand	45	4	-23.5456
chr1	119702502	119702610	LINE	L1Md_F3	L1	chr1L1Md_F3119701839	ProperStrand	1	chr17	39847359	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr19	24942235	24942267	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr17	39847440	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	3	-5.1730
chr9	120130482	120130502	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr16	67289763	67289782	protein_coding	Cadm2	intron	ENSMUSG00000064115	NonProperStrand	6	1	-9.6714
chr7	79296194	79296284	protein_coding	Mctp2	intron	ENSMUSG00000032776	NonProperStrand	9	chr14	33968136	33968216	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	2	-19.7801
chr2	5379297	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr2	130172907	130172926	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	13	1	-5.1841
chr11	69403794	69403884	protein_coding-noncoding	Trp53	utr5	ENSMUSG00000059552	NonProperStrand	1	chr11	69403896	69404065	protein_coding	Trp53	intron	ENSMUSG00000059552	NonProperStrand	3	1	-inf
chr14	34479102	34479192	LINE	L1MDa	L1	chr14L1MDa34478910	ProperStrand	1	chr14	34236451	34236531	protein_coding	Mapk8	intron	ENSMUSG00000021936	NonProperStrand	1	1	-inf
chr13	90999339	90999439	LINE	L1_Mus3	L1	chr13L1_Mus390998485	NonProperStrand	1	chr17	39847552	39847569	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	1	-inf
chr18	13914982	13915062	protein_coding	Zfp521	intron	ENSMUSG00000024420	NonProperStrand	8	chr18	39484564	39484654	protein_coding	Arhgap26	intron	ENSMUSG00000036452	NonProperStrand	10	1	-14.7114
chr18	73776106	73776196	LTR	RMER20A	ERVK	chr18RMER20A73775717	ProperStrand	1	chr18	73776353	73776433	SINE	B2_Mm2	B2	chr18B2_Mm273776315	ProperStrand	1	1	-inf
chr11	6620331	6620440	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr17	39847452	39847867	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	3	-3.0614
chr8	90993855	90993876	LINE	L1MA6	L1	chr8L1MA690993639	ProperStrand	5	chr17	39847181	39847215	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-6.3853
chr2	5385997	5386087	protein_coding	Camk1d	intron	ENSMUSG00000039145	NonProperStrand	10	chr14	33967735	33967815	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	1	-13.0138
chr13	34025261	34025278	protein_coding	Serpinb6a	intron	ENSMUSG00000060147	NonProperStrand	3	chr16	23110846	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr6	89658727	89658817	LTR	ORR1A3-int	MaLR	chr6ORR1A3-int89658685	ProperStrand	1	chr6	89658158	89658238	SINE	B1_Mus2	Alu	chr6B1_Mus289658080	NonProperStrand	1	1	-inf
chr9	99401525	99401605	protein_coding	Armc8	intron	ENSMUSG00000032468	NonProperStrand	2	chr9	99408350	99408440	protein_coding	Armc8	intron	ENSMUSG00000032468	ProperStrand	2	1	-21.5566
chr17	39846606	39846734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr6	39406881	39406910	SINE	B2_Mm2	B2	chr6B2_Mm239406826	ProperStrand	1	1	-inf
chr7	111117518	111117598	LINE	L1Md_F2	L1	chr7L1Md_F2111116997	ProperStrand	1	chr7	111117796	111117886	LINE	L1VL1	L1	chr7L1VL1111117585	NonProperStrand	1	1	-inf
chr17	39846470	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr15	10485771	10485849	protein_coding	Ttc23l	intron	ENSMUSG00000022249	ProperStrand	1	1	-inf
chr3	96176373	96176435	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr17	24720792	24720869	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	2	-8.6381
chr17	69157124	69157214	LINE	Lx7	L1	chr17Lx769157115	NonProperStrand	1	chr17	69156884	69156964	LINE	Lx9	L1	chr17Lx969156516	ProperStrand	1	1	-inf
chr18	75008680	75008696	LINE	Lx8	L1	chr18Lx875008384	ProperStrand	1	chr8	70895763	70895863	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-inf
chr5	134703367	134703457	protein_coding-noncoding	Ncf1	utr3	ENSMUSG00000015950	NonProperStrand	1	chr5	134703149	134703229	protein_coding	Ncf1	intron	ENSMUSG00000015950	NonProperStrand	1	1	-inf
chr4	103290890	103290970	LTR	MTD	MaLR	chr4MTD103290909	ProperStrand	1	chr4	103290496	103290586	SINE	B1_Mm	Alu	chr4B1_Mm103290426	ProperStrand	1	1	-inf
chr2	177479009	177479089	LINE	L1VL1	L1	chr2L1VL1177476150	ProperStrand	1	chr2	178038929	178039019	protein_coding	Phactr3	intron	ENSMUSG00000027525	ProperStrand	2	1	-inf
chr3	56183308	56183325	LINE	L1Md_A	L1	chr3L1Md_A56183116	ProperStrand	5	chr12	80441432	80441492	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	10	1	-15.7399
chr16	91729454	91729478	protein_coding	Atp5o	intron	ENSMUSG00000022956	NonProperStrand	5	chr4	132310260	132310368	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-7.4568
chr14	75847961	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr1	131573996	131574030	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-5.4954
chr18	35557029	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr19	10624817	10624843	protein_coding	Tmem216	intron	ENSMUSG00000024667	NonProperStrand	1	1	-inf
chr3	123507993	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr2	71089842	71089858	protein_coding	Dync1i2	intron	ENSMUSG00000027012	NonProperStrand	4	1	-8.1644
chr14	121351267	121351357	SINE	B1_Mus1	Alu	chr14B1_Mus1121351235	NonProperStrand	1	chr14	121351768	121351848	SINE	B3A	B2	chr14B3A121351786	ProperStrand	1	1	-inf
chr16	24984418	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	chr2	5379273	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.8320
chr16	23110390	23111676	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr1	132504428	132504444	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	13	2	-7.9093
chr11	97932310	97932326	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int97931491	NonProperStrand	1	chr17	39847212	39847257	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-inf
chr10	45857484	45857564	LINE	L1Md_A	L1	chr10L1Md_A45857225	NonProperStrand	1	chr5	102243807	102243897	protein_coding	Cds1	intron	ENSMUSG00000029330	ProperStrand	1	1	-inf
chr11	69669643	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr15	85177753	85177788	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	2	-8.6152
chr2	91596072	91596102	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	11	chr16	23110893	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.7386
chr7	29388887	29388967	SINE	B2_Mm2	B2	chr7B2_Mm229388775	ProperStrand	1	chr7	29395127	29395217	protein_coding	C330005M16Rik	intron	ENSMUSG00000037469	NonProperStrand	1	1	-inf
chr7	141448813	141448938	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	1	-8.8170
chr17	34497214	34497294	protein_coding	Btnl2	intron	ENSMUSG00000024340	ProperStrand	1	chr17	34518769	34518859	protein_coding	Btnl1	intron	ENSMUSG00000062638	ProperStrand	1	1	-inf
chr19	8888537	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	chr16	23110823	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	14	-10.1520
chr8	70895846	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chrX	134806215	134806239	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	14	1	-6.7116
chr10	89789672	89789693	protein_coding	Anks1b	intron	ENSMUSG00000058589	ProperStrand	14	chr19	8888600	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-6.4703
chr1	122357178	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr5	146260996	146261267	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	5	-8.1037
chr4	43492956	43493041	SINE	B3	B2	chr4B343492960	NonProperStrand	40	chr8	95746100	95746158	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-7.8330
chr3	9428345	9428361	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	9	chr9	123462009	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-4.7558
chr17	39847555	39847601	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	28669170	28669191	protein_coding	Snd1	intron	ENSMUSG00000001424	ProperStrand	8	1	-3.3062
chr13	95330701	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr16	23110754	23110800	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-4.0642
chr10	76607136	76607785	protein_coding	Col18a1	intron	ENSMUSG00000001435	ProperStrand	12	chr13	112578208	112578298	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-6.1707
chr8	126496786	126496866	protein_coding	Abcb10	intron	ENSMUSG00000031974	ProperStrand	2	chr8	126691748	126691838	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	59	1	-14.4048
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	56223609	56223648	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	8	1	-4.1268
chr17	73546677	73546757	protein_coding	Lclat1	intron	ENSMUSG00000054469	ProperStrand	2	chr17	72791603	72791693	protein_coding	Alk	intron	ENSMUSG00000055471	NonProperStrand	4	1	-19.9190
chr11	105922648	105922664	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	chr5	121205116	121205142	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-8.7212
chr17	39847037	39847104	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	71641583	71641613	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	11	1	-3.1848
chr8	85259246	85259326	LTR	MTD	MaLR	chr8MTD85259207	NonProperStrand	1	chr8	85259373	85259463	LTR	ORR1B1	MaLR	chr8ORR1B185259310	NonProperStrand	1	1	-inf
chr11	109011745	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	136171689	136171705	LTR	ORR1A2	MaLR	chr6ORR1A2136171621	ProperStrand	1	1	-inf
chr5	44689431	44689511	LINE	L1_Mur3	L1	chr5L1_Mur344688250	NonProperStrand	1	chr5	44689671	44689761	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm44689499	ProperStrand	1	1	-inf
chr13	83359848	83359938	LINE	Lx3C	L1	chr13Lx3C83359866	ProperStrand	1	chr13	83360239	83360319	LTR	ORR1D1	MaLR	chr13ORR1D183360157	ProperStrand	1	1	-inf
chr3	105730851	105730941	protein_coding-noncoding	I830077J02Rik	utr3	ENSMUSG00000074342	ProperStrand	1	chr3	105731017	105731097	protein_coding	I830077J02Rik	intron	ENSMUSG00000074342	ProperStrand	1	1	-inf
chr9	123462126	123462178	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr1	87450470	87450492	pseudogene	Gm7592	.	ENSMUSG00000090186	ProperStrand	2	1	-8.2644
chrX	37082911	37083026	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	5	-7.2029
chr9	39270928	39270944	LINE	L1_Mur2	L1	chr9L1_Mur239270581	ProperStrand	2	chr16	35981617	35981648	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-13.4040
chr2	125923618	125923708	protein_coding	4930525F21Rik	intron	ENSMUSG00000027209	NonProperStrand	3	chr8	119183016	119183096	protein_coding	Cdyl2	intron	ENSMUSG00000031758	NonProperStrand	2	1	-20.7434
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	137032657	137032675	protein_coding	Cux1	intron	ENSMUSG00000029705	ProperStrand	10	1	-5.2066
chr15	24429600	24429680	SINE	B4A	B4	chr15B4A24429488	ProperStrand	1	chr15	24429807	24429897	Simple_repeat	(CA)n	Simple_repeat	chr15(CA)n24429759	ProperStrand	1	1	-inf
chr9	120130415	120130447	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr1	55081694	55081712	protein_coding	Sf3b1	intron	ENSMUSG00000025982	ProperStrand	2	1	-12.3739
chrX	94189807	94189839	LINE	L1VL2	L1	chrXL1VL294189392	NonProperStrand	10	chr2	32963363	32963401	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-7.4264
chr11	97781675	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr4	132974183	132974202	protein_coding	Slc9a1	intron	ENSMUSG00000028854	ProperStrand	8	1	-9.2306
chr7	143703334	143704524	LTR	ORR1D1	MaLR	chr7ORR1D1143704191	NonProperStrand	1	chr7	122067036	122067052	Simple_repeat	(T)n	Simple_repeat	chr7(T)n122067037	NonProperStrand	1	1	-inf
chr15	34440790	34440914	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr5	114851993	114852040	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	3	-4.2510
chr4	94555767	94555785	LINE	L1_Mur3	L1	chr4L1_Mur394555762	ProperStrand	4	chr2	5379296	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-7.6968
chr6	45544580	45544600	protein_coding	Cntnap2	intron	ENSMUSG00000039419	NonProperStrand	15	chr8	95746136	95746190	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-9.8267
chr10	116889064	116889154	SINE	B1_Mur2	Alu	chr10B1_Mur2116889010	ProperStrand	1	chr10	116888837	116888917	SINE	B4A	B4	chr10B4A116888848	ProperStrand	1	1	-inf
chr15	29665161	29665251	LINE	Lx8	L1	chr15Lx829664907	NonProperStrand	1	chr15	29665530	29665610	LTR	RLTR21	ERVK	chr15RLTR2129665519	ProperStrand	1	1	-inf
chr13	54661785	54661801	protein_coding	4833439L19Rik	intron	ENSMUSG00000025871	NonProperStrand	3	chr4	132309940	132310011	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-8.6506
chr7	93139832	93139921	LINE	Lx5	L1	chr7Lx593139289	NonProperStrand	1	chr9	19657935	19658015	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	1	-inf
chr9	110281345	110281362	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	chr9	59670536	59670657	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	13	1	-9.4421
chr17	39847864	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr8	4246067	4246105	protein_coding	Map2k7	utr3	ENSMUSG00000002948	ProperStrand	2	1	-6.4812
chr14	78308021	78308037	protein_coding	Epsti1	intron	ENSMUSG00000022014	NonProperStrand	5	chr19	8888597	8888675	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-8.6536
chr15	58953665	58953725	LTR	MTEa	MaLR	chr15MTEa58953438	NonProperStrand	1	chr17	39846396	39846435	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	45335244	45335262	SINE	B1_Mur4	Alu	chr19B1_Mur445335217	NonProperStrand	6	1	-4.7173
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr9	66067554	66067571	protein_coding	Dapk2	intron	ENSMUSG00000032380	NonProperStrand	1	1	-inf
chr11	69667868	69667916	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr17	5347022	5347040	protein_coding	Arid1b	utr3	ENSMUSG00000069729	NonProperStrand	3	1	-9.7573
chr11	109011680	109011720	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	24122289	24122311	LINE	L1MB2	L1	chr19L1MB224122283	ProperStrand	1	1	-inf
chr17	36658364	36658454	LTR	MERVL-int	ERVL	chr17MERVL-int36657892	ProperStrand	1	chr17	36421496	36421576	protein_coding	H2-M10.2	exon	ENSMUSG00000023083	ProperStrand	1	1	-inf
chr3	159322710	159322790	LINE	L1Md_T	L1	chr3L1Md_T159322644	ProperStrand	1	chr3	159092157	159092247	LINE	Lx2B	L1	chr3Lx2B159091776	NonProperStrand	1	1	-inf
chr10	128493773	128493853	LINE	L1Md_F	L1	chr10L1Md_F128491087	ProperStrand	2	chr10	128573999	128574089	SINE	B1_Mm	Alu	chr10B1_Mm128573980	NonProperStrand	1	1	-inf
chr8	69599749	69599839	LINE	L1Md_F2	L1	chr8L1Md_F269596888	NonProperStrand	1	chr8	19955414	19955494	lincRNA	Gm17279	intron	ENSMUSG00000091588	ProperStrand	1	1	-inf
chr4	132352896	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr2	26639261	26639281	Simple_repeat	(TG)n	Simple_repeat	chr2(TG)n26639264	NonProperStrand	1	1	-inf
chr18	80225587	80225667	LTR	MT2C_Mm	ERVL	chr18MT2C_Mm80225355	NonProperStrand	1	chr11	67817725	67817815	protein_coding	Stx8	intron	ENSMUSG00000020903	ProperStrand	4	1	-inf
chr17	39847193	39847220	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	53860734	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	5	1	-6.3853
chr17	39078868	39078958	LINE	Lx4A	L1	chr17Lx4A39078653	NonProperStrand	1	chr17	39079072	39079152	LTR	RMER17B	ERVK	chr17RMER17B39079026	ProperStrand	1	1	-inf
chr18	54634419	54634509	LINE	L1MDa	L1	chr18L1MDa54634349	ProperStrand	1	chr18	54634114	54634194	LINE	Lx4B	L1	chr18Lx4B54633559	NonProperStrand	1	1	-inf
chr11	69667860	69669784	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr2	5379266	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	9	-6.8323
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr8	84011405	84011422	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	28	1	-4.1766
chrX	37082913	37083026	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr2	49769672	49769700	protein_coding	Lypd6b	intron	ENSMUSG00000026765	ProperStrand	3	1	-12.3693
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr13	44869607	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-4.4520
chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr16	23110844	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	4	-3.8769
chr1	111816263	111816343	LINE	Lx3A	L1	chr1Lx3A111816187	NonProperStrand	1	chr1	111815851	111815941	LTR	RMER19B	ERVK	chr1RMER19B111815848	NonProperStrand	1	1	-inf
chr10	81475968	81476058	Unknown	MurSatRep1	Unknown	chr10MurSatRep181474157	NonProperStrand	1	chr10	81476267	81476347	Unknown	MurSatRep1	Unknown	chr10MurSatRep181476094	NonProperStrand	1	1	-inf
chr11	87426780	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	3	chr16	23110456	23110510	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-14.0423
chr8	92981896	92981913	LTR	MTD	MaLR	chr8MTD92981586	NonProperStrand	6	chr9	57337597	57337613	SINE	ID_B1	B4	chr9ID_B157337494	NonProperStrand	1	1	-inf
chr8	39458423	39458503	protein_coding	Sgcz	intron	ENSMUSG00000039539	ProperStrand	4	chr15	90487788	90487878	protein_coding	Cpne8	intron	ENSMUSG00000052560	NonProperStrand	2	1	-19.9239
chr18	60572127	60572217	LINE	L1Md_A	L1	chr18L1Md_A60566082	ProperStrand	1	chr18	60572351	60572431	LINE	L1Md_F2	L1	chr18L1Md_F260572203	ProperStrand	1	1	-inf
chr17	24720850	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr13	58402339	58402355	protein_coding	Kif27	intron	ENSMUSG00000060176	NonProperStrand	2	1	-11.0283
chr9	108493633	108493733	protein_coding	P4htm	intron	ENSMUSG00000006675	NonProperStrand	7	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.2192
chr17	39847867	39847901	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	31376331	31376426	protein_coding	Mkln1	intron	ENSMUSG00000025609	ProperStrand	4	1	-4.7422
chr10	125703635	125703652	LTR	RLTR10C	ERVK	chr10RLTR10C125703633	NonProperStrand	1	chr17	39847252	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-inf
chr6	70582619	70582699	LINE	L1VL4	L1	chr6L1VL470582583	ProperStrand	1	chr6	70582895	70582985	LINE	Lx	L1	chr6Lx70582862	ProperStrand	1	1	-inf
chr17	39846584	39846647	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr14	39476040	39476058	protein_coding	Nrg3	intron	ENSMUSG00000041014	NonProperStrand	9	1	-3.5690
chr15	43950378	43950468	LINE	L1VL4	L1	chr15L1VL443946506	NonProperStrand	1	chr15	43950798	43950878	LTR	RLTR19-int	ERVK	chr15RLTR19-int43950654	NonProperStrand	1	1	-inf
chr6	117710362	117710442	SINE	B4A	B4	chr6B4A117710335	ProperStrand	1	chr6	117710501	117710591	SINE	RSINE1	B4	chr6RSINE1117710507	ProperStrand	1	1	-inf
chr4	94555767	94555785	LINE	L1_Mur3	L1	chr4L1_Mur394555762	ProperStrand	4	chr17	39847442	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-4.7422
chr10	23785349	23785439	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr7	112790873	112790953	protein_coding	Fxc1	utr3	ENSMUSG00000089847	ProperStrand	2	1	-10.3808
chr15	78848081	78848161	SINE	ID2	ID	chr15ID278848092	NonProperStrand	1	chr15	78848178	78848268	Simple_repeat	(TG)n	Simple_repeat	chr15(TG)n78848188	ProperStrand	1	1	-inf
chr14	114285278	114285358	LTR	MTA_Mm-int	MaLR	chr14MTA_Mm-int114284373	ProperStrand	1	chr14	114285457	114285547	LTR	MTA_Mm	MaLR	chr14MTA_Mm114285389	ProperStrand	1	1	-inf
chr2	122167955	122167971	protein_coding	Duox1	intron	ENSMUSG00000033268	ProperStrand	1	chr16	23110834	23110884	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr11	6528086	6528166	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr7	141448802	141448888	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	1	-5.8610
chr11	102435916	102436087	SINE	B3	B2	chr11B3102435926	NonProperStrand	1	chr11	102435767	102435847	SINE	RSINE1	B4	chr11RSINE1102435751	NonProperStrand	1	1	-inf
chr2	90395151	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr15	22924532	22924555	protein_coding	Cdh18	intron	ENSMUSG00000040420	ProperStrand	4	1	-7.1761
chr17	39847440	39848063	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	132352441	132352857	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	21	-7.9812
chr5	57876656	57876736	LINE	L1Md_T	L1	chr5L1Md_T57876311	NonProperStrand	1	chr5	57877238	57877328	LINE	L1Md_T	L1	chr5L1Md_T57876953	ProperStrand	1	1	-inf
chr11	69667884	69667903	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr16	50193532	50193550	protein_coding	Bbx	utr3	ENSMUSG00000022641	NonProperStrand	2	1	-10.8530
chr11	109011645	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	26786343	26786362	protein_coding	Ergic1	intron	ENSMUSG00000001576	NonProperStrand	12	2	-5.8147
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr18	12500566	12502945	protein_coding	Lama3	intron	ENSMUSG00000024421	NonProperStrand	2	1	-7.3577
chr5	136272526	136272542	SINE	PB1D10	Alu	chr5PB1D10136272521	NonProperStrand	1	chr2	5379280	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr7	110629447	110629465	LINE	Lx2A1	L1	chr7Lx2A1110628941	NonProperStrand	1	chr17	39847860	39847944	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr11	62604536	62604586	LTR	MTC	MaLR	chr11MTC62604361	ProperStrand	5	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.9532
chr10	94908888	94908968	SINE	B2_Mm2	B2	chr10B2_Mm294908910	ProperStrand	1	chr10	94930015	94930105	SINE	B4A	B4	chr10B4A94930004	NonProperStrand	1	1	-inf
chr17	32141244	32141261	protein_coding	Hsf2bp	intron	ENSMUSG00000002076	ProperStrand	3	chr7	109520132	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-9.6724
chr11	109011794	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	160907608	160907624	protein_coding	Chd6	intron	ENSMUSG00000057133	ProperStrand	8	1	-4.1268
chr4	132309497	132310340	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr2	158356447	158359919	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	4	-5.5884
chr16	3790833	3790923	LINE	L1_Mur3	L1	chr16L1_Mur33790759	NonProperStrand	1	chr16	3791143	3791224	LINE	L1_Mur3	L1	chr16L1_Mur33791151	NonProperStrand	1	1	-inf
chr17	39848099	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr1	71640354	71650618	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	17	2	-9.6656
chr14	113523228	113523308	LINE	Lx6	L1	chr14Lx6113522849	NonProperStrand	1	chr14	113523846	113523936	LINE	Lx6	L1	chr14Lx6113523685	NonProperStrand	1	1	-inf
chr17	39846492	39846781	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	116238065	116245729	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	15	2	-4.6693
chr10	88475388	88475404	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	11	chr10	39959641	39959659	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	1	-13.1895
chr9	44800866	44800956	LTR	RLTR10C	ERVK	chr9RLTR10C44800802	NonProperStrand	1	chr9	44800723	44800803	LTR	RLTR19-int	ERVK	chr9RLTR19-int44800648	ProperStrand	1	1	-inf
chr2	8728744	8728760	LINE	L1M3	L1	chr2L1M38728723	NonProperStrand	1	chr4	132309951	132310030	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr13	9834319	9834408	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr17	39847277	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-3.9963
chr13	94358463	94358479	SINE	B4A	B4	chr13B4A94358361	ProperStrand	1	chr5	114851976	114852001	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-inf
chr2	5379296	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr19	8252252	8252279	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	1	-4.7707
chr16	56035807	56035888	protein_coding	Rg9mtd1	intron	ENSMUSG00000044763	ProperStrand	9	chr9	15313857	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-7.2279
chr5	114852002	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr17	26223500	26223626	protein_coding	Decr2	intron	ENSMUSG00000036775	NonProperStrand	3	1	-9.7229
chr14	21073128	21073218	Low_complexity	polypurine	Low_complexity	chr14polypurine21073124	NonProperStrand	1	chr14	21073309	21073389	Simple_repeat	(GGA)n	Simple_repeat	chr14(GGA)n21073218	NonProperStrand	1	1	-inf
chr1	150944770	150944850	LTR	BGLII	ERVK	chr1BGLII150944466	NonProperStrand	1	chr1	150945070	150945160	SINE	PB1D10	Alu	chr1PB1D10150945063	NonProperStrand	1	1	-inf
chr7	110046419	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr16	11134350	11134367	protein_coding	Txndc11	intron	ENSMUSG00000022498	ProperStrand	2	1	-13.5996
chr5	146261172	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr3	9428345	9428361	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	9	1	-6.3740
chr13	46798494	46798584	protein_coding	Nup153	intron	ENSMUSG00000021374	NonProperStrand	1	chr13	46016138	46016218	protein_coding	Atxn1	intron	ENSMUSG00000046876	ProperStrand	13	1	-inf
chr11	103646419	103646437	protein_coding	Wnt3	intron	ENSMUSG00000000125	ProperStrand	5	chr7	109520120	109520189	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-8.4746
chr6	36810217	36810234	protein_coding	Dgki	intron	ENSMUSG00000038665	NonProperStrand	7	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.2192
chr19	13335411	13335501	LINE	Lx6	L1	chr19Lx613335036	NonProperStrand	1	chr19	13335651	13335731	Simple_repeat	(TA)n	Simple_repeat	chr19(TA)n13335668	NonProperStrand	1	1	-inf
chr17	39846412	39846453	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	23907061	23907078	protein_coding	Ap3m2	intron	ENSMUSG00000031539	NonProperStrand	1	1	-inf
chr17	39846113	39846849	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	39845826	39846238	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	19	-15.6644
chr4	132309466	132310343	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr9	15313803	15315269	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	11	-10.5920
chr2	32963383	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr13	46767624	46767656	protein_coding	C78339	intron	ENSMUSG00000069237	NonProperStrand	10	1	-7.4264
chr12	102499122	102499212	LTR	MERVL_2A-int	ERVL	chr12MERVL_2A-int102498823	NonProperStrand	1	chr12	102499286	102499366	LTR	MERVL_2A-int	ERVL	chr12MERVL_2A-int102499254	NonProperStrand	1	1	-inf
chr13	99380371	99380391	LINE	Lx9	L1	chr13Lx999379941	NonProperStrand	1	chr2	90395138	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr13	112578190	112578259	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr10	88475389	88475405	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	11	1	-6.3492
chr12	99025074	99025093	SINE	MIRb	MIR	chr12MIRb99025029	ProperStrand	1	chr5	87003689	87003707	protein_coding	Tmprss11f	intron	ENSMUSG00000048764	ProperStrand	3	1	-inf
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr17	24719675	24719809	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-5.9148
chr17	39847284	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-3.7707
chr17	39847132	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	109012011	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	5	-5.2859
chr19	35521083	35521173	LTR	MYSERV-int	ERVK	chr19MYSERV-int35520743	NonProperStrand	1	chr19	35521423	35521503	LTR	RMER6B	ERVK	chr19RMER6B35521328	ProperStrand	1	1	-inf
chr5	146261080	146261101	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr15	77775137	77775233	protein_coding	Foxred2	intron	ENSMUSG00000016552	ProperStrand	7	1	-6.9037
chrX	74272550	74272570	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr17	24719675	24719792	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-5.1194
chr11	108632118	108632208	protein_coding	Ccdc46	intron	ENSMUSG00000020728	NonProperStrand	5	chr15	72994532	72994611	protein_coding	Eif2c2	intron	ENSMUSG00000036698	NonProperStrand	4	1	-17.7390
chr12	6131516	6131535	LTR	MER74A	ERVL	chr12MER74A6131262	ProperStrand	2	chr10	20361034	20361052	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	6	1	-19.1217
chr16	20888013	20888103	LINE	L1_Mus1	L1	chr16L1_Mus120887527	ProperStrand	1	chr16	20888326	20888406	LTR	RLTR6-int	ERV1	chr16RLTR6-int20888235	ProperStrand	1	1	-inf
chr8	31149901	31149938	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	10	chr13	44869607	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.2025
chr17	39847847	39847888	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	62687868	62687885	protein_coding	Cln6	intron	ENSMUSG00000032245	ProperStrand	1	1	-inf
chr1	23943313	23943403	LINE	L1_Mus3	L1	chr1L1_Mus323943332	NonProperStrand	1	chr1	23943482	23943562	LTR	MT2B	ERVL	chr1MT2B23943436	ProperStrand	1	1	-inf
chr6	101016721	101016811	DNA	MER2	MER2_type	chr6MER2101016628	NonProperStrand	1	chr6	101016159	101016238	SINE	ID_B1	B4	chr6ID_B1101016086	NonProperStrand	1	1	-inf
chr17	39848496	39848576	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr2	167063296	167063724	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	6	1	-9.4385
chr2	44861508	44861588	protein_coding	Zeb2	intron	ENSMUSG00000026872	ProperStrand	5	chr16	9914363	9914453	protein_coding	Grin2a	intron	ENSMUSG00000059003	ProperStrand	5	3	-23.5405
chr11	114807410	114807500	SINE	B3	B2	chr11B3114807390	ProperStrand	1	chr11	114807584	114807664	SINE	ID_B1	B4	chr11ID_B1114807581	ProperStrand	1	1	-inf
chr11	120818799	120818899	protein_coding	Slc16a3	intron	ENSMUSG00000025161	NonProperStrand	4	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-11.7867
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	16	chr19	40370684	40370706	protein_coding	Sorbs1	intron	ENSMUSG00000025006	ProperStrand	7	1	-14.0184
chr8	27594763	27594853	LTR	LTR41	ERVL	chr8LTR4127594667	ProperStrand	1	chr8	27204574	27204654	antisense	1700047A11Rik	.	ENSMUSG00000085437	ProperStrand	2	1	-inf
chr4	132352440	132352525	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr15	34440791	34440921	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	3	-5.4500
chr8	79601649	79601742	protein_coding	Nr3c2	intron	ENSMUSG00000031618	NonProperStrand	12	chr13	97190572	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.7641
chrX	157967470	157967550	LINE	L1M5	L1	chrXL1M5157967265	ProperStrand	1	chrX	157967045	157967135	SINE	B4	B4	chrXB4157966964	ProperStrand	1	1	-inf
chr16	26794838	26794928	LTR	MTC	MaLR	chr16MTC26794732	ProperStrand	1	chr16	26795220	26795300	SINE	PB1D9	Alu	chr16PB1D926795206	ProperStrand	1	1	-inf
chr3	123507963	123507994	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr6	93815824	93912897	protein_coding	Magi1	intron	ENSMUSG00000045095	NonProperStrand	11	1	-5.9810
chr17	23818853	23818872	protein_coding	Cldn6	utr3	ENSMUSG00000023906	NonProperStrand	5	chr18	35557039	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-9.7564
chr5	115490291	115490371	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	6	chr13	44869576	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.2830
chr10	23455053	23455143	LINE	L1_Mus1	L1	chr10L1_Mus123454546	ProperStrand	1	chr15	72994543	72994623	protein_coding	Eif2c2	intron	ENSMUSG00000036698	ProperStrand	5	1	-inf
chr4	98387141	98387231	LTR	ORR1B1	MaLR	chr4ORR1B198387148	NonProperStrand	1	chr4	98386895	98386975	Simple_repeat	(TTCC)n	Simple_repeat	chr4(TTCC)n98386836	ProperStrand	1	1	-inf
chr10	23785346	23785397	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr2	109974579	109974597	protein_coding	Ccdc34	intron	ENSMUSG00000027160	NonProperStrand	1	1	-inf
chr13	7946595	7946685	LINE	Lx8	L1	chr13Lx87946506	ProperStrand	1	chr13	7946205	7946285	LTR	ORR1C2	MaLR	chr13ORR1C27946182	NonProperStrand	1	1	-inf
chr15	79824442	79824540	LTR	RMER13B	ERVK	chr15RMER13B79824221	NonProperStrand	1	chr16	23110893	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-4.1986
chr7	109520233	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr10	105238495	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-4.1311
chr5	146261267	146261316	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr18	53384639	53385183	SINE	B1F1	Alu	chr18B1F153384639	NonProperStrand	2	1	-13.1148
chr15	77769506	77769551	LTR	RLTR14	ERV1	chr15RLTR1477769170	ProperStrand	1	chr15	77769775	77769875	SINE	ID_B1	B4	chr15ID_B177769676	ProperStrand	2	1	-inf
chr17	35148611	35148691	protein_coding-noncoding	Vars	utr5	ENSMUSG00000007029	ProperStrand	2	chr17	35148762	35148852	protein_coding	Vars	exon	ENSMUSG00000007029	ProperStrand	3	2	-inf
chr15	89455095	89455185	LINE	L1_Rod	L1	chr15L1_Rod89455043	ProperStrand	1	chr15	89455439	89455519	LINE	Lx9	L1	chr15Lx989455332	ProperStrand	1	1	-inf
chr4	46115205	46115295	protein_coding	Tmod1	intron	ENSMUSG00000028328	ProperStrand	4	chr16	22079237	22079317	protein_coding	Igf2bp2	intron	ENSMUSG00000033581	ProperStrand	4	1	-18.2441
chr10	53503036	53503061	LINE	L1Md_T	L1	chr10L1Md_T53502840	ProperStrand	2	chr2	5304252	5304270	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-9.4768
chr17	39846647	39846734	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr6	6114014	6114236	protein_coding	Slc25a13	intron	ENSMUSG00000015112	NonProperStrand	6	1	-10.2891
chr15	10143336	10143416	protein_coding-noncoding	Prlr	utr5	ENSMUSG00000005268	ProperStrand	1	chr15	10143690	10143780	protein_coding	Prlr	intron	ENSMUSG00000005268	ProperStrand	5	1	-inf
chr10	81489937	81490011	LINE	L1Md_F2	L1	chr10L1Md_F281486805	ProperStrand	2	chr17	39846943	39846996	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-7.0123
chr3	84210341	84259327	Simple_repeat	(GA)n	Simple_repeat	chr3(GA)n84210315	ProperStrand	2	chr2	90395146	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-8.9527
chr9	123461942	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr9	40804179	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	23	2	-5.1583
chr12	111146820	111146900	LTR	IAPEz-int	ERVK	chr12IAPEz-int111140526	ProperStrand	1	chr12	111147003	111147093	LTR	IAPLTR1a_Mm	ERVK	chr12IAPLTR1a_Mm111146894	ProperStrand	1	1	-inf
chr8	65949687	65949777	LINE	Lx2	L1	chr8Lx265949347	ProperStrand	1	chr8	65949178	65949258	LTR	MYSERV16_I-int	ERVK	chr8MYSERV16_I-int65948510	ProperStrand	1	1	-inf
chr4	125992487	125992567	LTR	RMER17C	ERVK	chr4RMER17C125992448	ProperStrand	1	chr4	125992316	125992406	SINE	B1_Mur2	Alu	chr4B1_Mur2125992254	ProperStrand	2	1	-inf
chr17	39848197	39848291	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	chr11	72359883	72361807	protein_coding	Spns3	intron	ENSMUSG00000020798	NonProperStrand	2	1	-15.5193
chr16	98063132	98063246	protein_coding	Prdm15	intron	ENSMUSG00000014039	NonProperStrand	4	chr12	67665451	67665545	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	3	-23.0783
chr12	112744006	112744086	SINE	B1_Mur2	Alu	chr12B1_Mur2112744002	NonProperStrand	1	chr12	112743775	112743865	SINE	B2_Mm1a	B2	chr12B2_Mm1a112743739	ProperStrand	1	1	-inf
chr1	184121813	184121903	SINE	B1_Mus1	Alu	chr1B1_Mus1184121819	ProperStrand	1	chr1	184121655	184121735	SINE	B2_Mm1a	B2	chr1B2_Mm1a184121605	ProperStrand	1	1	-inf
chr10	61099471	61099561	SINE	B2_Mm2	B2	chr10B2_Mm261099375	NonProperStrand	2	chr10	61099623	61099703	Simple_repeat	(GAAA)n	Simple_repeat	chr10(GAAA)n61099541	NonProperStrand	2	2	-inf
chr4	123291351	123291416	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr13	46767577	46767629	protein_coding	C78339	intron	ENSMUSG00000069237	NonProperStrand	10	1	-10.5351
chr10	123801596	123801676	LTR	ORR1C2-int	MaLR	chr10ORR1C2-int123801429	NonProperStrand	1	chr10	123801771	123801861	LTR	ORR1C2	MaLR	chr10ORR1C2123801726	NonProperStrand	1	1	-inf
chr4	10803770	10803860	protein_coding	2610301B20Rik	intron	ENSMUSG00000059482	NonProperStrand	1	chr4	10803918	10803998	protein_coding	2610301B20Rik	intron	ENSMUSG00000059482	ProperStrand	1	1	-inf
chr19	36829320	36829400	LTR	MurERV4-int	ERVK	chr19MurERV4-int36828524	ProperStrand	1	chr19	50330629	50330719	protein_coding	Sorcs1	intron	ENSMUSG00000043531	NonProperStrand	3	1	-inf
chr19	21549643	21549733	LTR	RLTR21	ERVK	chr19RLTR2121549489	NonProperStrand	1	chr19	21549842	21549922	LTR	RLTR21	ERVK	chr19RLTR2121549755	NonProperStrand	1	1	-inf
chr12	11739653	11739675	LINE	L1Md_F3	L1	chr12L1Md_F311739561	NonProperStrand	1	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	1	-inf
chr16	34706893	34709556	protein_coding	Ccdc14	intron	ENSMUSG00000022833	ProperStrand	1	chr1	71643917	71643958	protein_coding	Fn1	exon	ENSMUSG00000026193	ProperStrand	17	1	-inf
chr16	26287112	26287192	LTR	RMER13B	ERVK	chr16RMER13B26287015	ProperStrand	1	chr16	26286900	26286990	SINE	B1F2	Alu	chr16B1F226286899	ProperStrand	1	1	-inf
chr4	38337212	38337302	LINE	Lx8	L1	chr4Lx838336844	ProperStrand	1	chr4	38337394	38337474	LINE	Lx8	L1	chr4Lx838337390	ProperStrand	1	1	-inf
chr8	3803253	3803343	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	chr2	5379279	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.7608
chr17	53047309	53047326	Simple_repeat	(CA)n	Simple_repeat	chr17(CA)n53047309	NonProperStrand	1	chr7	104040101	104040117	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	17	1	-inf
chr17	39847475	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	109029719	109030133	protein_coding	3200002M19Rik	intron	ENSMUSG00000030649	NonProperStrand	1	1	-inf
chr2	130276316	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	chr5	45031329	45031348	protein_coding	Ldb2	intron	ENSMUSG00000039706	ProperStrand	6	1	-8.7185
chr19	5757124	5757166	protein_coding	Ltbp3	intron	ENSMUSG00000024940	ProperStrand	2	chr7	109520134	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-10.7680
chr4	70405993	70406073	Simple_repeat	(TTC)n	Simple_repeat	chr4(TTC)n70405834	NonProperStrand	1	chr4	70038484	70038574	protein_coding	Cdk5rap2	intron	ENSMUSG00000039298	NonProperStrand	1	1	-inf
chr11	111771924	111772004	LINE	Lx6	L1	chr11Lx6111771668	NonProperStrand	1	chr11	111772102	111772192	LINE	Lx6	L1	chr11Lx6111771976	NonProperStrand	1	1	-inf
chr17	39844619	39844674	DNA	URR1A	MER1_type	chr17URR1A39844603	NonProperStrand	159	chr13	6589188	6589288	protein_coding	Pfkp	intron	ENSMUSG00000021196	ProperStrand	3	1	-11.3142
chr5	69157374	69157454	LINE	L1Md_T	L1	chr5L1Md_T69156474	ProperStrand	1	chr5	69156348	69156438	LTR	RMER15	ERVL	chr5RMER1569155926	ProperStrand	1	1	-inf
chr16	23110380	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr11	69667876	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	12	-8.6688
chr11	6620332	6620432	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr4	132309938	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-3.5223
chr5	107905208	107905308	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	chr8	122491683	122491703	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	48	1	-5.5449
chr4	121636644	121636724	LTR	MYSERV6-int	ERVK	chr4MYSERV6-int121636025	ProperStrand	1	chr4	121636939	121637029	LTR	RLTR15	ERVK	chr4RLTR15121636760	ProperStrand	1	1	-inf
chr4	96584039	96585831	LINE	Lx4B	L1	chr4Lx4B96583910	ProperStrand	1	chr4	96583832	96583912	LTR	RLTR25B	ERVK	chr4RLTR25B96582890	ProperStrand	1	1	-inf
chr7	76229504	76229594	LINE	Lx5	L1	chr7Lx576229063	ProperStrand	1	chr7	76229666	76229746	LINE	Lx5	L1	chr7Lx576229517	ProperStrand	1	1	-inf
chr3	137197629	137197719	Simple_repeat	(GA)n	Simple_repeat	chr3(GA)n137197572	NonProperStrand	1	chr3	137197844	137197924	Simple_repeat	(GGAGA)n	Simple_repeat	chr3(GGAGA)n137197752	NonProperStrand	1	1	-inf
chr17	34950952	34951018	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr5	114851982	114852030	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-3.7760
chr5	114851974	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr16	23110450	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	2	-7.0842
chr2	58553723	58553813	protein_coding	Upp2	intron	ENSMUSG00000026839	ProperStrand	2	chr11	78146350	78146430	protein_coding	Pigs	intron	ENSMUSG00000041958	ProperStrand	1	1	-inf
chr3	54299938	54300018	LINE	L1MA5A	L1	chr3L1MA5A54299765	ProperStrand	1	chr3	59354936	59355026	LINE	L1_Mur2	L1	chr3L1_Mur259354615	NonProperStrand	1	1	-inf
chr17	39847209	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr16	35981600	35981643	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	3	-3.2285
chr10	23785348	23785428	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr12	99645571	99645661	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	1	-3.6828
chr9	123462082	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr15	83149669	83149759	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	6	2	-9.4383
chr8	70895771	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-3.1317
chr11	6528105	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr5	107907352	107907444	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-3.9519
chr9	120130466	120130504	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr2	158358389	158358473	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-3.4701
chr13	91883842	91883922	protein_coding	Acot12	intron	ENSMUSG00000021620	ProperStrand	2	chr7	122702539	122702629	protein_coding	Sox6	intron	ENSMUSG00000051910	ProperStrand	16	1	-17.0606
chr17	39846378	39846492	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr12	58214994	58215012	protein_coding	Slc25a21	intron	ENSMUSG00000035472	NonProperStrand	2	1	-7.0123
chr2	130276235	130276266	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr3	96724264	96724367	protein_coding	Gja8	utr5	ENSMUSG00000049908	ProperStrand	8	1	-8.0988
chr11	109011744	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	81433714	81433732	LTR	IAPEz-int	ERVK	chr10IAPEz-int81430973	NonProperStrand	1	1	-inf
chr15	76175158	76175209	protein_coding	Cyc1	intron	ENSMUSG00000022551	NonProperStrand	4	chr11	4091765	4091785	protein_coding	Tbc1d10a	intron	ENSMUSG00000034412	NonProperStrand	2	1	-19.9239
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr9	15315235	15315320	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	2	-4.9321
chr5	121205022	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr16	23110456	23110505	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	2	-7.3685
chr7	11712590	11712680	LINE	L1Md_A	L1	chr7L1Md_A11710367	NonProperStrand	1	chr7	11712831	11712911	LINE	L1_Mur2	L1	chr7L1_Mur211712843	NonProperStrand	1	1	-inf
chr16	11144108	11144198	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chr11	69396771	69396787	protein_coding	Trp53	intron	ENSMUSG00000059552	NonProperStrand	3	1	-13.8094
chr17	39847459	39847906	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	17987812	17987838	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	13	4	-9.3092
chr1	39548746	39548838	LINE	Lx5	L1	chr1Lx539548764	NonProperStrand	5	chr17	39847555	39847585	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-4.2576
chr16	43886767	43886816	protein_coding	Qtrtd1	intron	ENSMUSG00000022704	ProperStrand	5	chr16	23110837	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.3911
chr13	54190164	54190184	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	chr17	24719794	24719811	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-5.1194
chr5	44693555	44693635	LINE	L1_Mur3	L1	chr5L1_Mur344691373	NonProperStrand	1	chr5	44693894	44693984	SINE	B1F	Alu	chr5B1F44693906	ProperStrand	1	1	-inf
chr8	107591479	107591569	LTR	RMER17C	ERVK	chr8RMER17C107591363	NonProperStrand	2	chr8	107591604	107591684	SINE	B1_Mur4	Alu	chr8B1_Mur4107591615	ProperStrand	2	2	-inf
chr17	39847844	39847895	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	84594733	84594750	protein_coding	Dner	intron	ENSMUSG00000036766	ProperStrand	2	1	-6.4812
chr12	93007175	93007255	protein_coding	Ston2	intron	ENSMUSG00000020961	ProperStrand	2	chr12	93078856	93078946	protein_coding	Sel1l	intron	ENSMUSG00000020964	NonProperStrand	1	1	-inf
chr10	23785346	23785373	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr8	123103277	123103294	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	13	1	-6.0648
chr2	5379275	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr15	91888156	91888172	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	7	1	-6.4615
chr11	72444869	72444894	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	4	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-11.3795
chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr16	43653632	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-4.8387
chr17	39846723	39846821	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	71609669	71610960	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	4	1	-5.2608
chr2	180567593	180567610	lincRNA	Gm14342	intron	ENSMUSG00000086166	NonProperStrand	2	chr13	95330598	95330648	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	1	-13.2446
chr17	39847460	39847540	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	131177745	131177835	protein_coding	Rnf24	intron	ENSMUSG00000048911	ProperStrand	2	1	-6.4812
chr2	90395138	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	107905175	107907476	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	4	-3.5125
chr2	138966142	138966222	SINE	B3A	B2	chr2B3A138966121	ProperStrand	1	chr6	32959172	32959262	protein_coding	Chchd3	intron	ENSMUSG00000053768	NonProperStrand	1	1	-inf
chr17	39843774	39843914	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	ProperStrand	12	chr17	39843910	39844025	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	ProperStrand	2	2	-inf
chr2	5379278	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr8	13876096	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	2	-3.3977
chr7	110046503	110046547	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr2	158359794	158359846	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-4.6149
chr11	6402960	6403040	SINE	B1_Mus1	Alu	chr11B1_Mus16402960	NonProperStrand	1	chr11	6403202	6403292	SINE	B2_Mm2	B2	chr11B2_Mm26403174	ProperStrand	1	1	-inf
chr3	95746593	95746673	protein_coding	Anp32e	intron	ENSMUSG00000015749	NonProperStrand	1	chr6	39335510	39335600	protein_coding	Rab19	intron	ENSMUSG00000029923	NonProperStrand	1	1	-inf
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	chr13	97190572	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.3138
chr11	95413903	95413922	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n95413894	NonProperStrand	1	mmu-miR-6240	2	25	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-inf
chr11	18279894	18279974	LINE	L1M2	L1	chr11L1M218279772	ProperStrand	1	chr11	18280012	18280102	SINE	B3A	B2	chr11B3A18280000	ProperStrand	1	1	-inf
chr2	64540937	64540956	LTR	IAPLTR1a_Mm	ERVK	chr2IAPLTR1a_Mm64540714	ProperStrand	1	chr5	146261128	146261222	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-inf
chr16	56986960	56987050	LTR	RMER13B	ERVK	chr16RMER13B56986489	NonProperStrand	1	chr16	56987169	56987249	Other	RMER1C	Other	chr16RMER1C56987059	NonProperStrand	1	1	-inf
chr10	23785413	23785434	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr2	156312374	156312402	protein_coding	Epb4.1l1	intron	ENSMUSG00000027624	NonProperStrand	4	1	-8.5965
chr3	134650765	134650855	LINE	L1MA7	L1	chr3L1MA7134650732	ProperStrand	1	chr3	134650495	134650575	LTR	MLT1D	MaLR	chr3MLT1D134650394	ProperStrand	1	1	-inf
chr3	123507983	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr15	86194872	86194917	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-4.2006
chr6	149179648	149179728	LTR	MERVL-int	ERVL	chr6MERVL-int149174545	NonProperStrand	1	chr6	149179987	149180077	LTR	MT2_Mm	ERVL	chr6MT2_Mm149179909	NonProperStrand	1	1	-inf
chr10	61904097	61904177	protein_coding	Supv3l1	intron	ENSMUSG00000020079	NonProperStrand	1	chr10	62385864	62385954	protein_coding	Slc25a16	intron	ENSMUSG00000071253	ProperStrand	1	1	-inf
chr5	107905200	107905300	protein_coding	Btbd8	intron	ENSMUSG00000070632	NonProperStrand	2	chr2	28824781	28824823	protein_coding	1700101E01Rik	intron	ENSMUSG00000079502	NonProperStrand	3	1	-20.8207
chr3	56477265	56477345	DNA	BLACKJACK	AcHobo	chr3BLACKJACK56477105	ProperStrand	1	chr3	56477678	56477768	DNA	BLACKJACK	AcHobo	chr3BLACKJACK56477628	ProperStrand	1	1	-inf
chr7	59964617	59964707	LINE	L1_Mm	L1	chr7L1_Mm59964546	NonProperStrand	1	chr7	59964273	59964353	LINE	L1_Mur1	L1	chr7L1_Mur159964208	ProperStrand	1	1	-inf
chr3	123507999	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr15	7084938	7084957	protein_coding	Lifr	intron	ENSMUSG00000054263	ProperStrand	2	1	-9.9469
chr1	135463759	135464741	LINE	L1_Mus4	L1	chr1L1_Mus4135462451	ProperStrand	1	chr13	97190570	97190615	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr16	23110382	23110457	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr4	145745108	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	2	-5.2140
chr10	23785399	23785430	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr3	108554390	108554488	protein_coding	Aknad1	utr5	ENSMUSG00000049565	NonProperStrand	8	1	-7.0708
chr13	53283994	53284027	protein_coding	Ror2	intron	ENSMUSG00000021464	NonProperStrand	4	chr15	101195877	101195960	protein_coding	Krt80	intron	ENSMUSG00000037185	ProperStrand	1	1	-inf
chr6	115635043	115635059	LTR	RLTR17	ERVK	chr6RLTR17115635015	NonProperStrand	1	chr7	109520174	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-inf
chrX	74272482	74272571	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr17	24720804	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	2	-6.5809
chr17	39846206	39846363	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr17	39845951	39846222	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	NonProperStrand	45	4	-18.5703
chr17	34950992	34951018	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-3.2501
chr7	110046479	110046502	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr12	84149925	84149943	protein_coding	Rgs6	intron	ENSMUSG00000021219	NonProperStrand	7	1	-10.5589
chr12	72379624	72379714	SINE	B1F2	Alu	chr12B1F272379634	ProperStrand	1	chr12	72379524	72379604	SINE	B1_Mus1	Alu	chr12B1_Mus172379431	NonProperStrand	1	1	-inf
chr15	80078502	80078554	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr16	23110837	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-3.2862
chr13	28618430	28618510	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	NonProperStrand	5	chr13	28612356	28612446	lincRNA	2610307P16Rik	intron	ENSMUSG00000085936	ProperStrand	10	1	-15.7399
chr16	35981604	35981652	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr2	130276254	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	2	-5.4614
chr17	39847701	39847724	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	84667266	84667282	protein_coding	Timm10	utr5	ENSMUSG00000027076	NonProperStrand	2	1	-6.4812
chr7	109520119	109520215	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	2	-4.8077
chr4	48469782	48469862	protein_coding	Tex10	intron	ENSMUSG00000028345	NonProperStrand	2	chr4	48456507	48456597	protein_coding	Tex10	intron	ENSMUSG00000028345	ProperStrand	1	1	-inf
chr6	83689119	83689209	LTR	MTEb-int	MaLR	chr6MTEb-int83689064	NonProperStrand	1	chr6	83688816	83688896	LTR	MTEb	MaLR	chr6MTEb83688694	NonProperStrand	1	1	-inf
chr2	91478269	91478349	SINE	B1_Mur3	Alu	chr2B1_Mur391478292	ProperStrand	1	chr2	91478645	91478735	SINE	RSINE1	B4	chr2RSINE191478671	NonProperStrand	1	1	-inf
chr2	175176821	175176911	LINE	L1_Mur2	L1	chr2L1_Mur2175176838	ProperStrand	1	chr2	175176633	175176713	SINE	B4A	B4	chr2B4A175176610	ProperStrand	1	1	-inf
chr13	44869577	44869693	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr6	85438855	85438872	protein_coding	Fbxo41	intron	ENSMUSG00000047013	ProperStrand	2	1	-9.9728
chr17	24720785	24720854	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr13	46767583	46767651	protein_coding	C78339	intron	ENSMUSG00000069237	NonProperStrand	10	1	-7.2431
chr7	136352607	136352687	LTR	MTE2b	MaLR	chr7MTE2b136352578	ProperStrand	1	chr7	136352365	136352455	Simple_repeat	(CA)n	Simple_repeat	chr7(CA)n136352384	NonProperStrand	1	1	-inf
chr5	147903132	147903150	protein_coding	Polr1d	intron	ENSMUSG00000029642	ProperStrand	2	chr2	5379317	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-9.4768
chr4	33055495	33055575	LTR	ORR1A1	MaLR	chr4ORR1A133055450	NonProperStrand	1	chr4	33055784	33055874	LTR	RMER13A	ERVK	chr4RMER13A33055743	ProperStrand	1	1	-inf
chr12	78350923	78350988	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-4.6310
chr17	24719676	24719740	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr4	32818109	32818130	protein_coding	Mdn1	intron	ENSMUSG00000058006	NonProperStrand	1	1	-inf
chr6	134298990	134299080	LINE	L1_Mus3	L1	chr6L1_Mus3134298849	NonProperStrand	1	chr6	134298650	134298730	SINE	PB1D10	Alu	chr6PB1D10134298646	ProperStrand	1	1	-inf
chr11	109011791	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	31149863	31149903	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	10	1	-3.6858
chr11	109011794	109011855	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	94936253	94937953	protein_coding	Itga3	intron	ENSMUSG00000001507	NonProperStrand	6	2	-8.0988
chr1	17940851	17940941	LTR	MYSERV6-int	ERVK	chr1MYSERV6-int17939735	ProperStrand	1	chr1	17941122	17941202	LTR	MYSERV6-int	ERVK	chr1MYSERV6-int17941120	ProperStrand	1	1	-inf
chr17	39848189	39848224	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr14	76117147	76117213	protein_coding	Cog3	intron	ENSMUSG00000034893	NonProperStrand	2	1	-10.7569
chr11	72447865	72448000	protein_coding	Ube2g1	intron	ENSMUSG00000020794	ProperStrand	4	chr7	109520181	109520214	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-8.9823
chr17	39846580	39846695	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr11	99908568	99908585	protein_coding	Krt31	intron	ENSMUSG00000048981	ProperStrand	1	1	-inf
chr13	85860817	85860907	LINE	Lx2	L1	chr13Lx285856618	ProperStrand	1	chr13	85861088	85861168	LTR	RLTR31_Mm	ERVK	chr13RLTR31_Mm85861102	ProperStrand	1	1	-inf
chr16	60908548	60908638	LINE	L1_Mur2	L1	chr16L1_Mur260907893	ProperStrand	1	chr2	180929346	180929426	protein_coding	Ptk6	utr3	ENSMUSG00000038751	ProperStrand	1	1	-inf
chr11	6620324	6620440	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr3	153911643	153911662	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	16	1	-10.6777
chr1	187797463	187797553	Low_complexity	GA-rich	Low_complexity	chr1GA-rich187797451	ProperStrand	1	chr1	187797292	187797372	SINE	B4A	B4	chr1B4A187797151	ProperStrand	1	1	-inf
chr17	24528500	24528552	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	10	chr2	104470941	104470974	protein_coding	Cstf3	intron	ENSMUSG00000027176	NonProperStrand	2	1	-18.0359
chr18	77035275	77035355	LINE	Lx6	L1	chr18Lx677034107	ProperStrand	1	chrX	74015014	74015104	LINE	L1VL1	L1	chrXL1VL174014520	NonProperStrand	2	1	-inf
chr4	132352919	132352986	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr2	32963283	32963359	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	2	-3.4896
chr14	78286611	78286691	LINE	L1MC4	L1	chr14L1MC478285971	ProperStrand	1	chr14	78287094	78287184	LTR	MLT1C	MaLR	chr14MLT1C78286862	ProperStrand	1	1	-inf
chr2	90395157	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr3	138898366	138898383	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	NonProperStrand	4	1	-7.1761
chr11	6620331	6620440	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr13	44869601	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-6.3383
chr3	67612606	67612622	LINE	Lx7	L1	chr3Lx767612583	ProperStrand	7	chr17	39847477	39847830	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	2	-6.2856
chr4	132352894	132352955	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr11	69667932	69669726	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	2	-3.0425
chr6	71739595	71739675	protein_coding	Reep1	intron	ENSMUSG00000052852	ProperStrand	4	chr6	71499987	71500077	protein_coding	Chmp3	intron	ENSMUSG00000053119	NonProperStrand	1	1	-inf
chr2	134813980	134814060	protein_coding-noncoding	Plcb1	utr5	ENSMUSG00000051177	NonProperStrand	1	chr2	134813683	134813773	protein_coding	Plcb1	intron	ENSMUSG00000051177	NonProperStrand	6	1	-inf
chr12	24795263	24795353	LTR	MTD	MaLR	chr12MTD24795137	NonProperStrand	1	chr12	24794995	24795075	SINE	B1_Mus1	Alu	chr12B1_Mus124794986	ProperStrand	1	1	-inf
chr17	39847046	39847080	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	128084143	128084168	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	6	1	-4.3847
chr6	117901525	117901605	Low_complexity	CT-rich	Low_complexity	chr6CT-rich117901538	ProperStrand	1	chr6	117901676	117901765	SINE	B1_Mur2	Alu	chr6B1_Mur2117901624	NonProperStrand	1	1	-inf
chr9	123461931	123462006	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	117154516	117154543	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	13	1	-4.0251
chr17	88431487	88431509	protein_coding	Fbxo11	intron	ENSMUSG00000005371	NonProperStrand	3	chr9	15315201	15315291	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-9.6947
chr8	6041308	6041388	LINE	L1Md_F2	L1	chr8L1Md_F26040541	NonProperStrand	1	chr7	99492984	99493074	protein_coding	Dlg2	intron	ENSMUSG00000052572	ProperStrand	26	1	-inf
chr11	83584848	83584867	protein_coding	Heatr6	intron	ENSMUSG00000000976	NonProperStrand	4	chr8	85555298	85555331	protein_coding	Rnf150	intron	ENSMUSG00000047747	ProperStrand	7	1	-17.0111
chr3	121455032	121457100	LTR	MMETn-int	ERVK	chr3MMETn-int121454634	ProperStrand	1	chr3	121457117	121457207	LTR	RLTR13D6	ERVK	chr3RLTR13D6121456967	ProperStrand	1	1	-inf
chr17	39846411	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	158356420	158359935	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	8	-3.9489
chr2	47169867	47169957	LTR	RMER6-int	ERVK	chr2RMER6-int47169761	ProperStrand	1	chr2	47170205	47170285	LTR	RMER6-int	ERVK	chr2RMER6-int47170126	ProperStrand	1	1	-inf
chr8	89902437	89902527	DNA	MER2	MER2_type	chr8MER289902372	ProperStrand	1	chr8	89902649	89902729	LINE	L1MD	L1	chr8L1MD89902640	ProperStrand	1	1	-inf
chr11	109011745	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	59076321	59076337	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	7	1	-4.3977
chr11	109011747	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	91888156	91888172	protein_coding	Cntn1	intron	ENSMUSG00000055022	ProperStrand	7	1	-4.3977
chr7	94950351	94950431	protein_coding	Grm5	intron	ENSMUSG00000049583	NonProperStrand	3	chr2	150239789	150239879	protein_coding	Zfp442	intron	ENSMUSG00000068130	ProperStrand	2	1	-20.7434
chr17	39848099	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr17	35556016	35556116	LTR	RMER17A	ERVK	chr17RMER17A35555875	ProperStrand	2	1	-10.7569
chr17	39847844	39847927	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	164950706	164950723	protein_coding	Cdh22	intron	ENSMUSG00000053166	ProperStrand	6	1	-3.8783
chr2	168011157	168011180	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	chr2	32963368	32963415	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-7.0483
chr15	58094707	58094797	lincRNA	Gm15943	intron	ENSMUSG00000086801	ProperStrand	8	chr17	66109156	66109236	protein_coding	Rab31	intron	ENSMUSG00000056515	ProperStrand	2	1	-18.5064
chr11	14711199	14711279	LTR	MERVK26-int	ERVK	chr11MERVK26-int14710595	NonProperStrand	1	chr11	14711606	14711696	LTR	RLTR26	ERVK	chr11RLTR2614711443	NonProperStrand	1	1	-inf
chr2	39634431	39634521	LTR	IAPEz-int	ERVK	chr2IAPEz-int39634432	NonProperStrand	1	chr2	39634198	39634278	LTR	IAPLTR1a_Mm	ERVK	chr2IAPLTR1a_Mm39634094	NonProperStrand	1	1	-inf
chr1	45341214	45342171	DNA	Zaphod	Tip100	chr1Zaphod45341939	NonProperStrand	3	chr1	45342202	45343401	LINE	Lx9	L1	chr1Lx945343184	NonProperStrand	4	3	-inf
chr9	120130415	120130506	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr11	69667931	69669728	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	2	-3.3440
chrX	7867560	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	16	chr4	117154515	117154583	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	13	1	-12.7069
chr18	15099454	15099534	LINE	Lx9	L1	chr18Lx915099467	ProperStrand	1	chr18	15099707	15099797	LTR	RMER17B	ERVK	chr18RMER17B15099623	NonProperStrand	1	1	-inf
chr12	89589306	89589386	LTR	MMERVK10C-int	ERVK	chr12MMERVK10C-int89586181	ProperStrand	1	chr12	110779994	110780084	lincRNA	Meg3	intron	ENSMUSG00000021268	NonProperStrand	3	1	-inf
chr17	28167025	28167042	protein_coding	Anks1	intron	ENSMUSG00000024219	ProperStrand	5	chr17	24720807	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-8.7338
chr5	146260995	146261022	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr12	30769298	30769317	protein_coding	Tpo	intron	ENSMUSG00000020673	ProperStrand	1	1	-inf
chr17	39847049	39847139	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr11	118198513	118198536	protein_coding	Timp2	intron	ENSMUSG00000017466	NonProperStrand	3	1	-11.8956
chr17	17368107	17368187	LTR	RLTR10B2	ERVK	chr17RLTR10B217367784	NonProperStrand	1	chr17	17368238	17368328	LTR	RLTR25A	ERVK	chr17RLTR25A17368209	ProperStrand	1	1	-inf
chr11	99052458	99052486	LTR	RLTR19-int	ERVK	chr11RLTR19-int99052368	ProperStrand	1	chr4	132309940	132310068	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr3	16099875	16099896	protein_coding	Ythdf3	intron	ENSMUSG00000047213	ProperStrand	1	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-inf
chr17	39846759	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	112185765	112185920	lincRNA	2900079G21Rik	intron	ENSMUSG00000087038	NonProperStrand	3	1	-5.9338
chr5	146260994	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr16	23110382	23111701	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	16	-8.5293
chr15	96560433	96560513	LTR	MLT1H2	MaLR	chr15MLT1H296560364	NonProperStrand	1	chr15	96560574	96560663	SINE	ID_B1	B4	chr15ID_B196560547	ProperStrand	1	1	-inf
chr2	9646876	9646966	LINE	Lx5	L1	chr2Lx59646099	ProperStrand	1	chr2	9647121	9647201	LINE	Lx5	L1	chr2Lx59647094	ProperStrand	1	1	-inf
chr17	39846528	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr12	84009531	84009549	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	8	1	-3.8005
chr6	49236509	49236609	SINE	B1_Mm	Alu	chr6B1_Mm49236504	NonProperStrand	5	chr7	109520121	109520195	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-8.4746
chr15	40134216	40134305	LINE	L1Md_F2	L1	chr15L1Md_F240134140	ProperStrand	1	chr15	40134611	40134691	Simple_repeat	(TTCC)n	Simple_repeat	chr15(TTCC)n40134624	NonProperStrand	1	1	-inf
chr11	56715738	56715828	LINE	L1M4c	L1	chr11L1M4c56715736	NonProperStrand	1	chr11	56715493	56715573	SINE	ID4_	ID	chr11ID4_56715498	NonProperStrand	1	1	-inf
chr13	97190551	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr1	159340355	159340371	protein_coding	Rasal2	intron	ENSMUSG00000070565	NonProperStrand	8	1	-6.6028
chr5	146261165	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr16	23110475	23110507	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-3.3954
chr11	91922821	91922911	LINE	L1Md_F2	L1	chr11L1Md_F291921454	NonProperStrand	1	chr4	147400883	147400963	protein_coding	Clcn6	intron	ENSMUSG00000029016	NonProperStrand	1	1	-inf
chr10	17124520	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr13	44869599	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-8.5114
chrX	73964604	73964684	LINE	L1_Mur2	L1	chrXL1_Mur273962705	NonProperStrand	1	chrX	73964789	73964879	LTR	RMER13B	ERVK	chrXRMER13B73964761	NonProperStrand	1	1	-inf
chr8	108653808	108653898	protein_coding	Nfatc3	utr3	ENSMUSG00000031902	NonProperStrand	4	chr8	108654487	108654567	protein_coding	Esrp2	utr3	ENSMUSG00000084128	ProperStrand	1	1	-inf
chr10	118052205	118052224	LTR	RLTR28	ERVL	chr10RLTR28118051832	ProperStrand	3	chr5	146261081	146261115	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-8.8310
chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr9	118675034	118675072	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	10	1	-5.2394
chr6	69051968	69052058	LINE	L1Md_F2	L1	chr6L1Md_F269050876	ProperStrand	1	chr6	69052369	69052449	LINE	L1Md_F2	L1	chr6L1Md_F269052214	ProperStrand	1	1	-inf
chr11	69669735	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr10	127566575	127566601	protein_coding	Rbms2	utr3	ENSMUSG00000040043	ProperStrand	6	1	-8.1566
chr13	44869601	44869684	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr8	95746114	95746177	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	2	-4.9516
chr5	149952176	149952195	lincRNA	5730422E09Rik	intron	ENSMUSG00000086085	NonProperStrand	1	chr4	132309497	132309594	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr5	110424858	110424947	lincRNA	1010001B22Rik	intron	ENSMUSG00000091434	NonProperStrand	1	chr5	110427738	110427797	protein_coding	Zfp932	intron	ENSMUSG00000066613	ProperStrand	2	1	-inf
chr8	92981896	92981913	LTR	MTD	MaLR	chr8MTD92981586	NonProperStrand	6	chr9	123461835	123461851	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-5.5993
chr17	39847277	39847349	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	45346507	45346554	protein_coding	Exosc3	intron	ENSMUSG00000028322	ProperStrand	6	1	-5.9886
chr8	85176124	85176204	SINE	B4A	B4	chr8B4A85176130	ProperStrand	1	chr8	85401091	85401181	protein_coding	Rnf150	intron	ENSMUSG00000047747	NonProperStrand	6	1	-inf
chr13	30710360	30710440	lincRNA	4930519D14Rik	intron	ENSMUSG00000086263	ProperStrand	2	chr9	88561293	88561383	lincRNA	Gm17683	intron	ENSMUSG00000091564	ProperStrand	7	1	-18.7795
chr11	109011747	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	39959641	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	3	-7.7216
chr5	146261260	146261283	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-10.1154
chrX	50045704	50045784	LINE	L1MB7	L1	chrXL1MB750045385	NonProperStrand	1	chrX	50046192	50046282	LTR	MTE2b	MaLR	chrXMTE2b50046148	NonProperStrand	1	1	-inf
chr12	110442719	110442809	LINE	L1_Mm	L1	chr12L1_Mm110442578	NonProperStrand	1	chr12	110442469	110442549	LTR	RMER4B	ERVK	chr12RMER4B110442018	NonProperStrand	1	1	-inf
chr2	22744838	22744916	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr7	30478214	30478232	LTR	RLTR6-int	ERV1	chr7RLTR6-int30478003	NonProperStrand	1	1	-inf
chr9	101691385	101691465	LINE	L1_Mus2	L1	chr9L1_Mus2101691329	ProperStrand	1	chr9	101691631	101691721	SINE	ID_B1	B4	chr9ID_B1101691556	NonProperStrand	1	1	-inf
chr17	39843491	39843581	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	chr16	98079314	98079394	protein_coding	C2cd2	utr3	ENSMUSG00000045975	ProperStrand	1	1	-inf
chrY	1905810	1905900	LINE	Lx6	L1	chrYLx61905653	ProperStrand	1	chr18	24783657	24783737	protein_coding	Elp2	intron	ENSMUSG00000024271	NonProperStrand	2	1	-inf
chr11	109011795	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr18	77778567	77778599	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	6	1	-4.7173
chr10	23785343	23785404	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	106501253	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	3	-3.6863
chr9	110281289	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-5.5761
chr11	101630973	101633811	protein_coding	Etv4	intron	ENSMUSG00000017724	ProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr11	106501243	106501328	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chrX	140765252	140765268	protein_coding	Alg13	intron	ENSMUSG00000041718	NonProperStrand	1	1	-inf
chr2	155895450	155895530	protein_coding-noncoding	Spag4	utr5	ENSMUSG00000038180	ProperStrand	1	chr2	43424691	43424781	protein_coding	Kynu	intron	ENSMUSG00000026866	NonProperStrand	4	1	-inf
chr3	123507994	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr11	94947293	94947460	Low_complexity	CT-rich	Low_complexity	chr11CT-rich94947299	ProperStrand	1	1	-inf
chr11	97781693	97781761	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr2	102829375	102829448	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	15	1	-7.9175
chr6	116714932	116715012	Other	RMER1B	Other	chr6RMER1B116713957	ProperStrand	1	chr6	116261355	116261445	protein_coding	Anubl1	intron	ENSMUSG00000042213	NonProperStrand	2	1	-inf
chr17	39846662	39846751	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	95033991	95034610	protein_coding	Cdc42se1	intron	ENSMUSG00000046722	NonProperStrand	1	1	-inf
chr13	63193709	63193789	protein_coding	2010111I01Rik	intron	ENSMUSG00000021458	ProperStrand	4	chr1	8935687	8935777	protein_coding	Sntg1	intron	ENSMUSG00000025909	NonProperStrand	5	1	-17.7431
chr10	85026740	85026830	protein_coding	Btbd11	intron	ENSMUSG00000020042	NonProperStrand	6	chr10	85031565	85031645	protein_coding	Btbd11	intron	ENSMUSG00000020042	ProperStrand	3	1	-18.0454
chr7	114159647	114159727	LINE	L1Md_F2	L1	chr7L1Md_F2114159560	ProperStrand	1	chr7	114159215	114159305	LINE	Lx2B	L1	chr7Lx2B114158787	ProperStrand	1	1	-inf
chr4	75696556	75696646	protein_coding	Ptprd	intron	ENSMUSG00000028399	NonProperStrand	10	chr7	103550499	103550579	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	16	1	-13.2565
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	1	-9.8033
chr11	109011746	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	3200765	3201565	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	7	-5.4838
chrX	36496958	36497048	LINE	Lx3_Mus	L1	chrXLx3_Mus36496678	NonProperStrand	1	chrX	36496479	36496559	LINE	MusHAL1	L1	chrXMusHAL136496377	ProperStrand	1	1	-inf
chr3	145674328	145674418	protein_coding	Syde2	intron	ENSMUSG00000036863	ProperStrand	4	chr8	3390104	3390184	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	NonProperStrand	4	2	-22.0603
chr11	109011663	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	95746059	95746177	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	5	-5.7715
chr16	58813798	58813888	LTR	RLTR12A	ERVK	chr16RLTR12A58813809	NonProperStrand	1	chr16	58813576	58813656	LTR	RLTR31_Mm	ERVK	chr16RLTR31_Mm58813246	NonProperStrand	1	1	-inf
chr17	39847767	39847824	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	30308259	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	4	1	-4.7422
chr18	10052134	10052154	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr2	130276243	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-4.5306
chr11	6528085	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr10	81182100	81182190	Unknown	MurSatRep1	Unknown	chr10MurSatRep181181342	ProperStrand	3	1	-12.0535
chr3	29921384	29921474	antisense	Gm16722	.	ENSMUSG00000085702	ProperStrand	2	chr12	67667906	67667986	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-15.7067
chrX	47583321	47583411	LINE	L1_Mur2	L1	chrXL1_Mur247583218	ProperStrand	1	chrX	49791434	49791514	protein_coding	Gpc3	intron	ENSMUSG00000055653	NonProperStrand	2	1	-inf
chr14	96588867	96588903	protein_coding	Klhl1	intron	ENSMUSG00000022076	NonProperStrand	8	chr9	123462090	123462163	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-4.9965
chr12	65369783	65369863	DNA	URR1A	MER1_type	chr12URR1A65369710	ProperStrand	1	chr12	65369314	65369404	LTR	MTC	MaLR	chr12MTC65369243	ProperStrand	1	1	-inf
chr4	132309538	132309566	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr10	105238438	105238521	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-3.1877
chr3	37481567	37481599	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	7	chr16	23110837	23110883	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.6666
chr8	53681096	53681116	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr2	90395138	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-3.4978
chr17	39847331	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	23110821	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	55	-4.6530
chr2	140954117	140954197	protein_coding	Macrod2	intron	ENSMUSG00000068205	NonProperStrand	6	chr2	140953723	140953813	pseudogene	Gm14080	.	ENSMUSG00000083274	NonProperStrand	1	1	-inf
chr5	137518551	137518587	protein_coding	Ap1s1	intron	ENSMUSG00000004849	NonProperStrand	1	chr9	15313839	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr11	97781659	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr11	6528032	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	2	-6.7086
chr11	97781694	97781761	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr10	128391347	128391387	protein_coding	Itga7	intron	ENSMUSG00000025348	ProperStrand	2	1	-12.5553
chr9	93444749	93444839	SINE	B1_Mur4	Alu	chr9B1_Mur493444758	ProperStrand	1	chr9	93445006	93445086	SINE	B1_Mus2	Alu	chr9B1_Mus293444961	NonProperStrand	1	1	-inf
chr1	122357178	122357226	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr7	28351615	28351633	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-5.3347
chr1	5170738	5170754	LINE	Lx4B	L1	chr1Lx4B5169206	NonProperStrand	11	chr5	17991449	17999658	LTR	RMER6C	ERVK	chr5RMER6C17991416	ProperStrand	2	1	-17.8376
chr11	106501242	106501324	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr13	44869575	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	3	-3.0558
chr1	65601728	65601808	LINE	L1_Mus1	L1	chr1L1_Mus165601692	NonProperStrand	1	chr18	23178666	23178756	protein_coding	Nol4	intron	ENSMUSG00000041923	NonProperStrand	4	1	-inf
chr4	123293149	123293224	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr5	35266216	35266236	protein_coding	A930005I04Rik	utr3	ENSMUSG00000051246	NonProperStrand	9	1	-10.7577
chr7	46837302	46837392	SINE	B1_Mm	Alu	chr7B1_Mm46837228	NonProperStrand	1	chr7	46837445	46837525	Simple_repeat	(TTAGGG)n	Simple_repeat	chr7(TTAGGG)n46837463	NonProperStrand	1	1	-inf
chr8	117275941	117276067	protein_coding	Wwox	intron	ENSMUSG00000004637	NonProperStrand	19	chr12	118951492	118951512	protein_coding	Rapgef5	intron	ENSMUSG00000041992	ProperStrand	2	1	-16.7057
chr14	75972525	75972621	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr16	23110802	23110854	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-4.5649
chr17	70963689	70963761	protein_coding	Dlgap1	intron	ENSMUSG00000003279	ProperStrand	41	chr13	51648210	51648291	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	1	-9.8994
chr7	33503959	33504039	LTR	MTA_Mm-int	MaLR	chr7MTA_Mm-int33503854	NonProperStrand	1	chr7	33503676	33503766	LTR	MTA_Mm	MaLR	chr7MTA_Mm33503461	NonProperStrand	1	1	-inf
chr2	172678909	172678927	SINE	B4A	B4	chr2B4A172678786	NonProperStrand	1	chr16	23110399	23110450	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr1	140439679	140439769	protein_coding	Nek7	intron	ENSMUSG00000026393	ProperStrand	3	chr3	139179717	139179797	protein_coding	B930007M17Rik	intron	ENSMUSG00000047940	ProperStrand	8	1	-17.4197
chr6	133563210	133563228	SINE	B2_Mm2	B2	chr6B2_Mm2133563173	ProperStrand	1	chr5	114851994	114852010	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	30307499	30307584	protein_coding	4932431P20Rik	intron	ENSMUSG00000074224	ProperStrand	1	1	-inf
chr4	35282576	35282666	LINE	L1Md_F2	L1	chr4L1Md_F235282369	ProperStrand	1	chr4	35282102	35282182	LINE	L1Md_F	L1	chr4L1Md_F35279629	ProperStrand	1	1	-inf
chr13	97190546	97190618	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr8	126944861	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	4	-5.3649
chr12	33020186	33020205	DNA	Ricksha	MuDR	chr12Ricksha33019533	NonProperStrand	1	chr2	90395139	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr17	39846462	39846844	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chrX	74272483	74272588	SINE	B3	B2	chrXB374272477	ProperStrand	54	6	-6.7923
chr11	109011661	109011715	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	48668121	48668202	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	7	1	-4.3977
chr2	5379273	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr8	109343806	109343825	protein_coding	Tmco7	intron	ENSMUSG00000041949	NonProperStrand	3	1	-8.3841
chr15	19552703	19552793	LTR	RLTR9C	ERVK	chr15RLTR9C19552666	NonProperStrand	1	chr4	155411387	155411467	protein_coding	Ttll10	intron	ENSMUSG00000029074	NonProperStrand	1	1	-inf
chr5	146261174	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr4	25654253	25654270	protein_coding	Fut9	intron	ENSMUSG00000055373	ProperStrand	3	1	-8.8310
chr3	123507989	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr10	105238434	105238519	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-3.3712
chr12	117571532	117571612	protein_coding	Esyt2	intron	ENSMUSG00000021171	NonProperStrand	2	chr1	89389800	89389890	protein_coding	Ngef	intron	ENSMUSG00000026259	NonProperStrand	1	1	-inf
chr5	146261080	146261111	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr8	90056319	90056338	SINE	B3	B2	chr8B390056163	NonProperStrand	1	1	-inf
chr1	106525613	106525693	LTR	RLTR40	ERVK	chr1RLTR40106525205	ProperStrand	1	chr6	34113985	34114075	protein_coding-noncoding	Slc35b4	utr3	ENSMUSG00000018999	ProperStrand	1	1	-inf
chr8	86885384	86885474	SINE	B3A	B2	chr8B3A86885369	NonProperStrand	1	chr8	86885936	86886016	SINE	PB1D7	Alu	chr8PB1D786885924	ProperStrand	1	1	-inf
chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	13	1	-5.6660
chr11	111035090	111035180	LINE	Lx3_Mus	L1	chr11Lx3_Mus111035055	ProperStrand	1	chr11	111034912	111034992	LTR	MTEa	MaLR	chr11MTEa111034923	NonProperStrand	1	1	-inf
chr4	28425279	28425369	LINE	Lx5	L1	chr4Lx528425249	ProperStrand	1	chr4	28424948	28425028	LTR	MTD	MaLR	chr4MTD28424898	NonProperStrand	1	1	-inf
chr1	71649316	71650641	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	17	chr9	60533002	60533019	protein_coding	Lrrc49	intron	ENSMUSG00000047766	ProperStrand	5	1	-14.6351
chr18	33795162	33795220	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr13	97190553	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-4.3106
chr7	123157782	123157809	protein_coding	Sox6	intron	ENSMUSG00000051910	NonProperStrand	10	chr11	93121851	93121869	protein_coding	Car10	intron	ENSMUSG00000056158	NonProperStrand	6	1	-15.3353
chr3	95929459	95929505	protein_coding	Otud7b	intron	ENSMUSG00000038495	ProperStrand	1	chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	1	-inf
chr17	39847636	39847656	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	65529494	65529510	protein_coding	Map2k4	intron	ENSMUSG00000033352	ProperStrand	4	1	-4.7422
chr4	132352782	132352833	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr11	99234272	99234290	protein_coding	Krt28	intron	ENSMUSG00000055937	ProperStrand	2	1	-11.5201
chr11	109011658	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	8888537	8888688	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	23	-12.2668
chr5	121205007	121205088	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr11	117077300	117077379	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-5.5387
chr6	85928908	85928998	LTR	RLTR45	ERVK	chr6RLTR4585928629	ProperStrand	1	chr7	46514546	46514626	protein_coding	Gm16387	intron	ENSMUSG00000074169	NonProperStrand	2	1	-inf
chr17	39847442	39848097	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	39848097	39848351	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	34	-13.6569
chr9	123461959	123462013	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr7	38196274	38196290	protein_coding	Zfp536	intron	ENSMUSG00000043456	ProperStrand	5	1	-5.9940
chr6	35210860	35210971	lincRNA	1810058I24Rik	intron	ENSMUSG00000073155	NonProperStrand	1	chr9	123462102	123462126	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	1	-inf
chrX	87238367	87238410	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	1	-6.7145
chr16	10957905	10957948	LTR	RMER15	ERVL	chr16RMER1510957866	ProperStrand	3	chr2	104776059	104776147	protein_coding	Ccdc73	intron	ENSMUSG00000045106	NonProperStrand	6	3	-inf
chr7	80989815	80989832	LTR	MTC	MaLR	chr7MTC80989665	NonProperStrand	1	chr4	56897694	56897757	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-inf
chr1	45335762	45337245	LINE	Lx3A	L1	chr1Lx3A45336590	NonProperStrand	2	chr16	43886788	43886820	protein_coding	Qtrtd1	intron	ENSMUSG00000022704	ProperStrand	5	1	-19.5000
chr18	72655042	72655132	LINE	L1Md_A	L1	chr18L1Md_A72650039	NonProperStrand	1	chr18	72655481	72655561	LINE	L1Md_A	L1	chr18L1Md_A72655221	NonProperStrand	1	1	-inf
chr17	39847189	39847206	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr3	96176418	96176436	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	1	-3.0178
chr17	61877497	61877587	LINE	Lx	L1	chr17Lx61875902	ProperStrand	1	chr12	67661130	67661210	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr3	123507994	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr13	9094103	9094122	protein_coding	Larp4b	intron	ENSMUSG00000033499	ProperStrand	2	1	-9.9469
chr8	123664471	123664551	protein_coding	Gm20388	intron	ENSMUSG00000092329	NonProperStrand	48	chr17	19127520	19127610	pseudogene	Vmn2r-ps118	.	ENSMUSG00000093607	NonProperStrand	1	1	-inf
chr14	75847958	75847985	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr2	167542213	167542249	lincRNA	A530013C23Rik	intron	ENSMUSG00000006462	ProperStrand	2	1	-13.0444
chr13	90098979	90099077	protein_coding	Xrcc4	intron	ENSMUSG00000021615	NonProperStrand	12	chr2	90395135	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	2	-8.1138
chr2	117214047	117214137	DNA	MER5B	MER1_type	chr2MER5B117214054	NonProperStrand	1	chr2	117213544	117213624	Simple_repeat	(TCTCC)n	Simple_repeat	chr2(TCTCC)n117213515	ProperStrand	1	1	-inf
chr7	93995284	93995302	LINE	L1Md_T	L1	chr7L1Md_T93994338	ProperStrand	5	chr17	24720797	24720835	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-8.7338
chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	chr2	5379280	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.0820
chr5	146261148	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr3	86140631	86140675	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	14	1	-5.4699
chr9	44789992	44790010	protein_coding	Cd3d	exon	ENSMUSG00000032094	NonProperStrand	2	chr17	24719675	24719789	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-12.3130
chr2	30135934	30136014	protein_coding-noncoding	Phyhd1	utr5	ENSMUSG00000079484	ProperStrand	1	chr2	30136046	30136136	protein_coding	Lrrc8a	intron	ENSMUSG00000007476	ProperStrand	2	1	-inf
chr6	94296440	94296457	LTR	MTD	MaLR	chr6MTD94296404	ProperStrand	1	chr14	78931075	78931165	protein_coding	Akap11	intron	ENSMUSG00000022016	ProperStrand	1	1	-inf
chr1	47738113	47738203	LINE	L1Md_A	L1	chr1L1Md_A47732126	ProperStrand	1	chr1	47738258	47738338	LTR	MYSERV16_I-int	ERVK	chr1MYSERV16_I-int47738269	ProperStrand	1	1	-inf
chr14	75847957	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	1	-6.6316
chr7	109520119	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr8	119905987	119906004	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	13	1	-6.4448
chr11	5828880	5828896	protein_coding	Gck	intron	ENSMUSG00000041798	ProperStrand	2	chr17	25890401	25890429	protein_coding	Msln	intron	ENSMUSG00000063011	NonProperStrand	4	1	-19.9190
chr17	65395633	65395723	LTR	MTC-int	MaLR	chr17MTC-int65394883	NonProperStrand	1	chr17	65396092	65396172	LTR	MTC	MaLR	chr17MTC65395827	NonProperStrand	1	1	-inf
chr13	49684380	49684434	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-10.0192
chr17	39846529	39846553	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr7	81529885	81529911	protein_coding	Slco3a1	intron	ENSMUSG00000025790	NonProperStrand	8	1	-3.8005
chr11	99017068	99017143	SINE	B1_Mur3	Alu	chr11B1_Mur399017062	ProperStrand	6	chr9	15315188	15315231	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-8.0943
chr17	39846964	39847006	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	108574696	108574796	protein_coding	Slc25a20	intron	ENSMUSG00000032602	NonProperStrand	5	1	-4.7701
chr17	39847672	39847698	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	90476216	90476232	protein_coding	Hunk	exon	ENSMUSG00000053414	NonProperStrand	4	1	-4.7422
chr14	75848010	75848034	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr6	61180060	61180722	protein_coding	Fam190a	intron	ENSMUSG00000039578	ProperStrand	12	1	-8.8645
chr17	39846818	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	172318665	172318727	protein_coding	Nos1ap	intron	ENSMUSG00000038473	NonProperStrand	6	1	-4.3847
chr2	131826660	131826740	protein_coding-noncoding	Rassf2	utr3	ENSMUSG00000027339	ProperStrand	1	chr2	131826517	131826607	protein_coding	Rassf2	intron	ENSMUSG00000027339	ProperStrand	1	1	-inf
chr8	43163217	43163277	LINE	L1Md_A	L1	chr8L1Md_A43160390	ProperStrand	1	chr17	39847195	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-inf
chr6	97162827	97162888	protein_coding	Arl6ip5	intron	ENSMUSG00000035199	NonProperStrand	7	chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.9510
chr19	8724016	8724034	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-4.8805
chr11	107439290	107439380	protein_coding-noncoding	Helz	utr5	ENSMUSG00000020721	ProperStrand	1	chr11	107439048	107439128	protein_coding	Helz	intron	ENSMUSG00000020721	ProperStrand	5	1	-inf
chr13	56176505	56176521	protein_coding	H2afy	intron	ENSMUSG00000015937	ProperStrand	2	chr13	95330598	95330627	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	1	-13.2446
chr12	65102623	65102703	LINE	Lx6	L1	chr12Lx665102485	ProperStrand	1	chr12	65102984	65103074	LTR	RMER13A	ERVK	chr12RMER13A65102713	ProperStrand	1	1	-inf
chr11	70652457	70652547	LTR	ORR1D2	MaLR	chr11ORR1D270652216	ProperStrand	1	chr11	70652633	70652713	SINE	B1_Mus2	Alu	chr11B1_Mus270652636	NonProperStrand	1	1	-inf
chr14	33968039	33968119	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	chr12	90620655	90620745	protein_coding	Nrxn3	intron	ENSMUSG00000066392	ProperStrand	13	1	-11.7115
chr15	82229106	82229197	SINE	B1_Mus2	Alu	chr15B1_Mus282229117	ProperStrand	1	chr15	82228883	82228963	SINE	B2_Mm2	B2	chr15B2_Mm282228823	ProperStrand	1	1	-inf
chr17	39847844	39847899	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	96610408	96610424	protein_coding	Igsf5	intron	ENSMUSG00000000159	NonProperStrand	3	1	-5.4090
chr14	31014331	31176527	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	24	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-7.8496
chr1	7189724	7189814	LTR	RLTR26	ERVK	chr1RLTR267189379	NonProperStrand	1	chr1	7190144	7190224	LTR	RMER19B	ERVK	chr1RMER19B7190084	NonProperStrand	1	1	-inf
chr10	99902284	99902374	LINE	Lx7	L1	chr10Lx799900418	ProperStrand	1	chr10	99902454	99902534	LTR	RMER6C	ERVK	chr10RMER6C99902369	ProperStrand	1	1	-inf
chr10	23785346	23785431	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr13	92354617	92354636	protein_coding	Rasgrf2	intron	ENSMUSG00000021708	NonProperStrand	8	1	-7.0708
chr16	11144058	11144148	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chr3	127587991	127588008	protein_coding	5730508B09Rik	intron	ENSMUSG00000050549	ProperStrand	2	1	-14.9073
chr6	100291089	100291169	SINE	B2_Mm2	B2	chr6B2_Mm2100290989	NonProperStrand	1	chr6	100291211	100291301	SINE	MIR	MIR	chr6MIR100291170	NonProperStrand	1	1	-inf
chr5	146261174	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	15949474	15949491	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	1	-4.4889
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr4	132352774	132352825	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	1	-5.1452
chr1	113904124	113904154	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	7	chr16	23110390	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-5.9793
chr17	24720780	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr13	44869600	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	6	-5.0260
chr10	83611279	83611369	SINE	MIRb	MIR	chr10MIRb83611286	ProperStrand	1	chr10	83611025	83611105	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n83610934	ProperStrand	1	1	-inf
chr5	121205007	121205090	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr4	56897627	56897717	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-4.5068
chr7	29464251	29464333	LTR	RMER5	ERV1	chr7RMER529464248	ProperStrand	1	chr7	29464476	29464566	SINE	ID_B1	B4	chr7ID_B129464397	NonProperStrand	1	1	-inf
chr17	33930320	33930336	LTR	ORR1A1	MaLR	chr17ORR1A133930122	NonProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr17	50195521	50195539	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	6	chr2	158358380	158358473	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-10.0662
chr11	109011748	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	23111681	23111756	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	2	-3.6069
chr11	75711225	75711315	protein_coding	Rph3al	intron	ENSMUSG00000020847	ProperStrand	2	chr4	129353761	129353841	protein_coding	Tmem39b	utr3	ENSMUSG00000053730	NonProperStrand	1	1	-inf
chr5	121664975	121665055	LTR	RLTR13C2	ERVK	chr5RLTR13C2121664970	ProperStrand	1	chr5	121664828	121664918	SINE	B3	B2	chr5B3121664798	NonProperStrand	1	1	-inf
chr1	4211466	4211556	LINE	L1Md_F2	L1	chr1L1Md_F24209557	ProperStrand	1	chr1	4211675	4211755	LINE	Lx9	L1	chr1Lx94211633	NonProperStrand	1	1	-inf
chr19	46760660	46760750	LINE	L1Md_F3	L1	chr19L1Md_F346760180	ProperStrand	1	chr19	46761019	46761099	LTR	MTE2b	MaLR	chr19MTE2b46760995	ProperStrand	1	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	20911437	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	11	2	-6.0835
chr11	97781654	97781734	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr11	100463422	100463512	protein_coding	Dnajc7	intron	ENSMUSG00000014195	ProperStrand	2	1	-12.5553
chr8	72645794	72645874	SINE	B4	B4	chr8B472645776	NonProperStrand	1	chr8	72645549	72645639	SINE	ID_B1	B4	chr8ID_B172645535	NonProperStrand	1	1	-inf
chr4	120814886	120814976	LINE	L1MB1	L1	chr4L1MB1120814897	ProperStrand	1	chr4	121003890	121003970	LINE	Lx3C	L1	chr4Lx3C121003439	NonProperStrand	1	1	-inf
chr3	153912177	153912204	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	16	chr9	15315289	15315318	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-6.0450
chr1	138330523	138330613	protein_coding-noncoding	Ddx59	utr5	ENSMUSG00000026404	ProperStrand	1	chr1	138330138	138330218	protein_coding	Ddx59	intron	ENSMUSG00000026404	ProperStrand	1	1	-inf
chr18	3448409	3448499	LINE	L1_Mus2	L1	chr18L1_Mus23447526	NonProperStrand	1	chr18	3448730	3448810	LTR	RLTR1B	ERV1	chr18RLTR1B3448487	NonProperStrand	1	1	-inf
chr11	6528084	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr4	132309940	132310324	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	3	-4.5649
chr15	96679954	96680044	Simple_repeat	(TA)n	Simple_repeat	chr15(TA)n96679933	ProperStrand	1	chr15	96409677	96409757	protein_coding	Slc38a1	intron	ENSMUSG00000023169	ProperStrand	1	1	-inf
chr10	70267241	70267260	LTR	ORR1A2	MaLR	chr10ORR1A270267030	ProperStrand	1	chr17	26934274	26934293	SINE	B1_Mus2	Alu	chr17B1_Mus226934175	ProperStrand	1	1	-inf
chr4	46495255	46495284	Simple_repeat	(CAGT)n	Simple_repeat	chr4(CAGT)n46495119	ProperStrand	3	chr13	44869627	44869659	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-8.8788
chr3	83766575	83766592	protein_coding	D930015E06Rik	intron	ENSMUSG00000033767	ProperStrand	7	chr12	58761969	58761985	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	1	-14.4491
chr4	56897678	56897742	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	chr16	23111379	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-8.1065
chr11	109012019	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-6.4218
chr13	23182787	23182877	LINE	L1_Mus3	L1	chr13L1_Mus323181601	NonProperStrand	1	chr13	23183186	23183266	LINE	L1_Mus3	L1	chr13L1_Mus323182858	NonProperStrand	1	1	-inf
chr11	47223649	47223666	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	14	chr6	115808032	115808100	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-8.9027
chr2	90395157	90395181	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	13260925	13260941	protein_coding	Vmn2r55	intron	ENSMUSG00000091045	ProperStrand	1	1	-inf
chr9	44407677	44407743	SINE	B3	B2	chr9B344407598	ProperStrand	1	chr16	43191797	43191829	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	6	1	-inf
chr17	39847756	39847842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	134184328	134184345	LTR	MTD	MaLR	chr5MTD134184211	NonProperStrand	1	1	-inf
chr9	120130448	120130501	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr17	24719706	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	2	-5.2734
chr4	132309956	132310012	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr5	110692047	110692147	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	1	-3.4196
chr1	161746764	161746854	protein_coding	Tnr	intron	ENSMUSG00000015829	ProperStrand	1	chr8	85509248	85512131	protein_coding	Rnf150	intron	ENSMUSG00000047747	ProperStrand	7	1	-inf
chr10	30328876	30328956	protein_coding	Hint3	intron	ENSMUSG00000019791	ProperStrand	1	chr10	30361335	30361425	protein_coding	Ncoa7	intron	ENSMUSG00000039697	ProperStrand	2	1	-inf
chr11	109011809	109011831	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr17	39846762	39846833	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	1	-8.6474
chr5	121205007	121205090	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr3	88693979	88694005	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	8	1	-7.6997
chr6	62402482	62402572	LINE	L1Md_A	L1	chr6L1Md_A62401117	NonProperStrand	1	chr6	62402981	62403061	LINE	L1_Mur2	L1	chr6L1_Mur262402800	NonProperStrand	1	1	-inf
chr18	4044940	4045020	LTR	MT2B	ERVL	chr18MT2B4044758	NonProperStrand	1	chr18	4045087	4045177	SINE	B1_Mus1	Alu	chr18B1_Mus14045045	ProperStrand	1	1	-inf
chr9	120130463	120130563	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr16	23111634	23111659	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-3.2633
chr5	146261175	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr12	112600075	112600099	protein_coding	Cdc42bpb	intron	ENSMUSG00000021279	NonProperStrand	4	1	-8.1425
chr4	57357384	57357464	LTR	ORR1E	MaLR	chr4ORR1E57357400	ProperStrand	1	chr4	57357581	57357671	SINE	B3	B2	chr4B357357531	ProperStrand	1	1	-inf
chr16	23110383	23110453	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr15	86194955	86194987	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-3.3104
chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	10	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-10.6127
chr17	12358528	12358608	protein_coding	Agpat4	intron	ENSMUSG00000023827	ProperStrand	1	chr1	175562780	175562870	protein_coding	Pyhin1	intron	ENSMUSG00000043263	ProperStrand	1	1	-inf
chr9	15313801	15315268	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	chr19	8888596	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	4	-4.0143
chr1	191278414	191278432	LTR	RLTR10	ERVK	chr1RLTR10191278297	NonProperStrand	1	chr2	135994397	135998680	protein_coding	Pak7	intron	ENSMUSG00000039913	ProperStrand	7	1	-inf
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr5	114852018	114852036	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-5.2633
chr4	132309465	132309537	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr16	11143905	11143995	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	NonProperStrand	3	1	-8.6506
chr8	86551930	86552010	protein_coding-noncoding	Palm3	utr5	ENSMUSG00000047986	ProperStrand	1	chr8	86552075	86552165	protein_coding	Palm3	intron	ENSMUSG00000047986	ProperStrand	1	1	-inf
chr5	133350231	133350252	SINE	B3A	B2	chr5B3A133350196	ProperStrand	1	chr9	123461904	123461930	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr9	105048468	105048489	LINE	Lx5	L1	chr9Lx5105047691	ProperStrand	2	chr17	39847477	39847843	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	2	-inf
chr17	39847957	39847973	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	130934550	130934566	LTR	RMER12	ERVK	chr4RMER12130933978	ProperStrand	1	1	-inf
chr17	39847449	39847470	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	28205141	28205231	protein_coding	Tcp11	intron	ENSMUSG00000062859	NonProperStrand	1	1	-inf
chr3	23269412	23269492	LINE	Lx5	L1	chr3Lx523269359	ProperStrand	1	chr3	23269270	23269360	LTR	RMER17C	ERVK	chr3RMER17C23269022	NonProperStrand	1	1	-inf
chr12	87437707	87437787	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-3.2694
chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr1	153234500	153234543	protein_coding	1200016B10Rik	intron	ENSMUSG00000052748	ProperStrand	1	1	-inf
chr3	123507995	123508061	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr8	92981896	92981913	LTR	MTD	MaLR	chr8MTD92981586	NonProperStrand	6	1	-7.2573
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-7.1564
chr8	106373383	106373473	LINE	L1MB1	L1	chr8L1MB1106373317	ProperStrand	1	chr8	106372930	106373010	LTR	RLTR20B3	ERVK	chr8RLTR20B3106372618	NonProperStrand	1	1	-inf
chr7	48835024	48835042	LTR	RMER17C-int	ERVK	chr7RMER17C-int48834928	ProperStrand	1	chr9	120130466	120130490	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-inf
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	97003088	97003107	protein_coding	Lrrc4c	intron	ENSMUSG00000050587	NonProperStrand	9	1	-3.8922
chr16	23110382	23111374	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr13	44869586	44870030	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	13	-5.6974
chr12	54696812	54696848	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	14	chr8	126944846	126944899	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-8.0062
chr6	90133204	90133294	LINE	L1_Mus2	L1	chr6L1_Mus290133226	NonProperStrand	1	chr6	90133553	90133633	LINE	L1_Mus4	L1	chr6L1_Mus490133327	NonProperStrand	1	1	-inf
chr11	109011796	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	4915288	4915312	protein_coding	Sbk2	intron	ENSMUSG00000030433	NonProperStrand	2	2	-inf
chr18	8319167	8319257	LINE	L1_Mur2	L1	chr18L1_Mur28319005	ProperStrand	2	chr18	8319370	8319450	LTR	ORR1B1	MaLR	chr18ORR1B18319383	NonProperStrand	2	2	-inf
chr18	85698192	85698216	LINE	Lx8	L1	chr18Lx885698131	NonProperStrand	5	chr13	44869934	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.6839
chr11	109011657	109012057	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	122357165	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	7	-4.1158
chr10	51721773	51721853	LINE	L1VL2	L1	chr10L1VL251721019	ProperStrand	1	chr10	51721987	51722077	LINE	L1VL2	L1	chr10L1VL251721998	ProperStrand	1	1	-inf
chrX	53166186	53166266	Unknown	YREP_Mm	Unknown	chrXYREP_Mm53166065	ProperStrand	1	chrX	53165996	53166086	pseudogene	Gm14624	.	ENSMUSG00000081089	NonProperStrand	1	1	-inf
chr11	109011744	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	24719674	24719811	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	13	-9.2385
chr12	54696823	54696945	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	14	chr9	110281320	110281339	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-9.2886
chr3	123507996	123508054	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr9	40804814	40804838	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	23	1	-4.5098
chr6	24731994	24732013	LTR	MTEa	MaLR	chr6MTEa24731815	NonProperStrand	1	chr9	123461824	123461901	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr17	39846353	39846400	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	105615649	105615666	protein_coding	Col6a6	intron	ENSMUSG00000043719	NonProperStrand	4	1	-5.2608
chr17	39847440	39848078	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr3	123507936	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	33	-5.1878
chr9	44698132	44699348	Simple_repeat	(TATATG)n	Simple_repeat	chr9(TATATG)n44698131	NonProperStrand	1	chr2	5379278	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr15	75900746	75901195	protein_coding	Puf60	intron	ENSMUSG00000002524	ProperStrand	1	chr15	75896826	75896916	protein_coding	Scrib	intron	ENSMUSG00000022568	ProperStrand	2	1	-inf
chr17	39847737	39847837	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr17	39848200	39848220	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	1	-7.1205
chr14	63248189	63248269	SINE	B1_Mm	Alu	chr14B1_Mm63248177	ProperStrand	1	chr14	63248319	63248409	Simple_repeat	(GAAA)n	Simple_repeat	chr14(GAAA)n63248313	ProperStrand	1	1	-inf
chr17	39848099	39848159	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	mmu-miR-2137	0	21	miRNA	mmu-miR-2137	.	mmu-miR-2137	ProperStrand	5	1	-8.4635
chr9	20911437	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	11	chr13	44869606	44869705	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.0064
chr17	44312443	44312523	SINE	B3A	B2	chr17B3A44312381	NonProperStrand	1	chr17	44392892	44392982	protein_coding	Clic5	intron	ENSMUSG00000023959	ProperStrand	3	1	-inf
chr6	30955392	30955482	LTR	ORR1B1-int	MaLR	chr6ORR1B1-int30954232	ProperStrand	1	chr6	30955625	30955705	LTR	ORR1B1	MaLR	chr6ORR1B130955525	ProperStrand	1	1	-inf
chrX	74272548	74272586	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr5	148315310	148315326	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	5	1	-12.2824
chr19	8972757	8972810	protein_coding	Ganab	intron	ENSMUSG00000071650	NonProperStrand	1	chr19	8971719	8971809	protein_coding	Ints5	exon	ENSMUSG00000071652	NonProperStrand	1	1	-inf
chr11	71113634	71114396	LINE	L1Md_A	L1	chr11L1Md_A71113655	NonProperStrand	1	chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr11	97781694	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr18	13972706	13972723	protein_coding	Zfp521	intron	ENSMUSG00000024420	NonProperStrand	8	1	-9.2306
chrX	15979901	15979981	LINE	L1Md_A	L1	chrXL1Md_A15973680	ProperStrand	1	chrX	15893556	15893646	LINE	L1_Mus2	L1	chrXL1_Mus215893046	ProperStrand	1	1	-inf
chr9	18860195	18860285	LTR	MMETn-int	ERVK	chr9MMETn-int18860195	NonProperStrand	1	chr9	18859920	18860000	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm18859859	NonProperStrand	1	1	-inf
chr17	35001456	35001564	protein_coding	C2	exon	ENSMUSG00000024371	NonProperStrand	6	chr2	73012734	73012766	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	17	1	-14.2298
chr14	20456318	20456369	LTR	RodERV21-int	ERV1	chr14RodERV21-int20456143	ProperStrand	1	chr17	39847440	39847511	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr17	39847440	39847789	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr13	44869602	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	ProperStrand	21	2	-12.9760
chr13	9834320	9834440	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr13	97190568	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.1850
chr9	123461957	123462059	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr8	13876096	13876226	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	3	-3.2164
chr12	86560723	86560803	protein_coding-noncoding	Eif2b2	utr5	ENSMUSG00000004788	NonProperStrand	1	chr12	86560589	86560679	protein_coding	Eif2b2	exon	ENSMUSG00000004788	NonProperStrand	1	1	-inf
chr16	24984418	24984434	protein_coding	Lpp	utr3	ENSMUSG00000033306	NonProperStrand	26	chr16	23110910	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.0914
chr11	116107578	116107595	protein_coding	Srp68	intron	ENSMUSG00000020780	ProperStrand	3	chr15	101625630	101625647	protein_coding	Krt73	intron	ENSMUSG00000063661	NonProperStrand	1	1	-inf
chr1	98577077	98577167	LINE	L1Md_A	L1	chr1L1Md_A98577014	ProperStrand	1	chr1	98576921	98577001	LTR	IAPLTR2_Mm	ERVK	chr1IAPLTR2_Mm98576559	ProperStrand	1	1	-inf
chr8	30992898	30992978	LINE	L1MA8	L1	chr8L1MA830992806	ProperStrand	1	chr8	30993267	30993357	LINE	L1MA8	L1	chr8L1MA830993265	ProperStrand	1	1	-inf
chr11	116238065	116238082	protein_coding	Rnf157	intron	ENSMUSG00000052949	ProperStrand	15	chr6	38577697	38577718	protein_coding	Klrg2	exon	ENSMUSG00000071537	NonProperStrand	1	1	-inf
chr3	75624677	75624757	SINE	B1_Mm	Alu	chr3B1_Mm75624638	ProperStrand	1	chr3	75624554	75624644	Simple_repeat	(TTTC)n	Simple_repeat	chr3(TTTC)n75624536	NonProperStrand	1	1	-inf
chr14	75847932	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr12	107595425	107595442	SINE	B3	B2	chr12B3107595277	ProperStrand	2	1	-13.0444
chr12	6131516	6131538	LTR	MER74A	ERVL	chr12MER74A6131262	ProperStrand	2	chr13	97190552	97190574	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-9.9068
chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr1	64921577	64921593	protein_coding	Plekhm3	intron	ENSMUSG00000051344	ProperStrand	2	1	-15.9877
chr8	114855335	114855415	LINE	L1MB1	L1	chr8L1MB1114855328	NonProperStrand	1	chr8	114855154	114855244	SINE	ID_B1	B4	chr8ID_B1114855139	NonProperStrand	1	1	-inf
chr5	146261175	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr18	80295154	80295171	protein_coding	Pard6g	intron	ENSMUSG00000056214	ProperStrand	2	1	-9.9250
chr9	119754557	119754574	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n119754535	ProperStrand	1	chr2	90395138	90395190	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr16	35981616	35981644	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr6	86993195	86993211	protein_coding	Gfpt1	intron	ENSMUSG00000029992	ProperStrand	1	1	-inf
chr2	32963311	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr15	86194751	86194773	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-5.4135
chr17	39846629	39846718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	75501888	75502534	protein_coding	Crk	intron	ENSMUSG00000017776	ProperStrand	1	1	-inf
chr17	39847812	39847891	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	119121076	119121105	protein_coding	Zmynd12	intron	ENSMUSG00000070806	ProperStrand	7	1	-3.5679
chr10	122565929	122566009	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr10	63708766	63708856	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	12	1	-12.1285
chr2	5379278	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr11	117077344	117077380	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-4.0652
chr17	39847888	39847978	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr17	39843631	39843711	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	65	1	-5.8348
chr3	123507938	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr13	42214351	42214370	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	13	2	-9.3188
chr4	43492949	43493029	SINE	B3	B2	chr4B343492960	NonProperStrand	40	chr11	87426790	87426880	protein_coding	Mtmr4	intron	ENSMUSG00000018401	ProperStrand	3	1	-14.0925
chr3	123507989	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr4	53860704	53860773	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	5	1	-7.6581
chr10	91118330	91118416	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr16	23110839	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-4.4511
chr7	5409188	5409278	LINE	L1_Mus1	L1	chr7L1_Mus15409059	NonProperStrand	2	chr7	120384367	120384447	protein_coding	Arntl	intron	ENSMUSG00000055116	NonProperStrand	2	1	-21.5566
chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	chr4	145745110	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-9.9453
chr6	14404243	14404323	LINE	L1_Mur1	L1	chr6L1_Mur114403697	ProperStrand	1	chr6	14404415	14404505	LINE	L1_Mus4	L1	chr6L1_Mus414404437	ProperStrand	1	1	-inf
chr4	132352895	132352955	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr17	7952215	7952242	protein_coding	Fndc1	intron	ENSMUSG00000071984	ProperStrand	4	1	-10.3408
chr5	100614102	100614119	LINE	Lx8	L1	chr5Lx8100613818	NonProperStrand	1	chr9	123461904	123461995	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	1	-inf
chr1	156078733	156078749	DNA	Charlie5	MER1_type	chr1Charlie5156078689	ProperStrand	1	chr8	115123226	115123316	protein_coding	Cntnap4	intron	ENSMUSG00000031772	NonProperStrand	4	1	-inf
chr10	108363744	108363798	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	chr15	86194986	86195068	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-11.0796
chr17	39847026	39847128	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	166067983	166068001	protein_coding	Selp	intron	ENSMUSG00000026580	ProperStrand	2	1	-7.0123
chr15	55981748	55981828	LINE	L1Md_T	L1	chr15L1Md_T55977369	ProperStrand	1	chr7	68362363	68362453	protein_coding	A230006K03Rik	intron	ENSMUSG00000078690	ProperStrand	2	1	-inf
chr3	31205946	31206036	lincRNA	Gm15496	intron	ENSMUSG00000085953	ProperStrand	5	chr9	121052524	121052604	protein_coding	Ulk4	intron	ENSMUSG00000040936	ProperStrand	5	1	-17.2429
chr3	9428345	9428361	lincRNA	C030034L19Rik	intron	ENSMUSG00000085362	ProperStrand	9	chr5	114851994	114852017	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-7.2558
chr7	110046442	110046475	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr6	115807980	115808066	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-5.2229
chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	chr9	15313858	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-6.8101
chr6	100419145	100419235	LTR	ORR1A1	MaLR	chr6ORR1A1100419036	NonProperStrand	1	chr6	100418871	100418951	LTR	RLTR12B	ERVK	chr6RLTR12B100418857	ProperStrand	1	1	-inf
chr7	110046439	110046476	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr7	29446475	29446575	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	1	-8.1719
chr3	149133259	149133349	LINE	L1_Mus1	L1	chr3L1_Mus1149131379	ProperStrand	1	chr3	149133433	149133513	SINE	B1_Mus1	Alu	chr3B1_Mus1149133421	ProperStrand	1	1	-inf
chr1	123702812	123702902	LTR	MTC	MaLR	chr1MTC123702583	NonProperStrand	1	chr1	123702949	123703029	LTR	MTE2b	MaLR	chr1MTE2b123702958	NonProperStrand	1	1	-inf
chr2	32963381	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr12	105031235	105031347	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-4.0047
chr1	122357188	122357235	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr1	153743956	153743972	protein_coding	1700025G04Rik	intron	ENSMUSG00000032666	NonProperStrand	4	1	-11.0571
chr4	133251614	133251704	protein_coding-noncoding	Arid1a	utr3	ENSMUSG00000007880	ProperStrand	1	chr4	133251883	133251963	protein_coding	Arid1a	exon	ENSMUSG00000007880	ProperStrand	3	1	-inf
chr11	99210083	99210104	protein_coding	Krt27	exon	ENSMUSG00000017588	ProperStrand	1	chr13	112578181	112578255	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-inf
chr12	75002011	75002101	DNA	URR1B	MER1_type	chr12URR1B75001993	ProperStrand	1	chr12	75002375	75002455	protein_coding	Hif1a	utr5	ENSMUSG00000021109	NonProperStrand	2	1	-inf
chr11	6528086	6528154	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr8	13876096	13876174	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-5.1641
chr11	109011671	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	69667860	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	15	-4.1410
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	94789929	94789946	SINE	PB1D10	Alu	chr10PB1D1094789915	NonProperStrand	1	1	-inf
chr3	97230161	97230241	LINE	L1_Mus3	L1	chr3L1_Mus397229223	NonProperStrand	1	chr3	97230288	97230378	LINE	L1_Mus3	L1	chr3L1_Mus397230261	ProperStrand	1	1	-inf
chr6	131380326	131380395	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr4	132309943	132310043	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-4.0819
chr18	53402742	53402832	LINE	L1M2	L1	chr18L1M253402745	ProperStrand	1	chr18	53402562	53402642	SINE	ID_B1	B4	chr18ID_B153402570	ProperStrand	1	1	-inf
chr7	112883987	112884111	protein_coding	Rrp8	intron	ENSMUSG00000030888	ProperStrand	1	chr1	163954527	163954544	protein_coding	Dnm3	intron	ENSMUSG00000040265	ProperStrand	7	1	-inf
chr16	19292135	19292225	LINE	L1Md_F2	L1	chr16L1Md_F219291856	NonProperStrand	1	chr7	103550487	103550567	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	17	1	-inf
chr5	30060672	30060762	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	8	chr7	47186422	47186502	SINE	PB1D10	Alu	chr7PB1D1047186421	ProperStrand	2	1	-18.5064
chrX	17396025	17396105	LTR	ETnERV2-int	ERVK	chrXETnERV2-int17395488	NonProperStrand	1	chrX	17396263	17396353	LTR	RMER17A2	ERVK	chrXRMER17A217396277	ProperStrand	1	1	-inf
chr18	33795195	33795295	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chrX	4899366	4899397	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	1	-10.6167
chr10	91181423	91181449	LINE	Lx9	L1	chr10Lx991181005	ProperStrand	1	chr11	109011745	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	1	-inf
chr13	111545510	111545600	LINE	L1_Mus1	L1	chr13L1_Mus1111545485	ProperStrand	1	chr13	111545722	111545804	LINE	L1_Mus1	L1	chr13L1_Mus1111545684	NonProperStrand	1	1	-inf
chr11	86092091	86092181	antisense	4632419I22Rik	.	ENSMUSG00000085208	ProperStrand	2	chr16	57391541	57391621	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-15.8421
chr2	102829377	102829445	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	15	mmu-miR-6240	2	19	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-9.0013
chr4	24863847	24863937	LINE	L1_Mus1	L1	chr4L1_Mus124863791	ProperStrand	1	chr4	24864074	24864154	LINE	L1_Mus1	L1	chr4L1_Mus124863957	NonProperStrand	1	1	-inf
chr17	39847281	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr12	8743908	8743924	protein_coding	Pum2	intron	ENSMUSG00000020594	ProperStrand	3	1	-7.5717
chr12	78903574	78903654	LTR	RLTR10-int	ERVK	chr12RLTR10-int78903386	ProperStrand	1	chr12	78904082	78904172	LTR	RLTR10-int	ERVK	chr12RLTR10-int78903733	ProperStrand	1	1	-inf
chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	chr16	23110837	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.3161
chr5	146261268	146261319	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	mmu-miR-1195	1	18	miRNA	mmu-miR-1195	.	mmu-miR-1195	ProperStrand	2	1	-13.1148
chr8	106160639	106161123	LINE	Lx3A	L1	chr8Lx3A106160220	NonProperStrand	1	chr7	28352547	28352637	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-inf
chr17	39846580	39846674	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr1	187170657	187170675	protein_coding	Bpnt1	intron	ENSMUSG00000026617	ProperStrand	2	1	-12.9931
chr17	39846846	39846936	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr1	152802154	152802234	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	13	1	-8.6474
chr17	39847439	39847471	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr3	133324005	133324021	SINE	B1F1	Alu	chr3B1F1133323992	NonProperStrand	1	1	-inf
chr7	141448801	141448903	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr13	44869619	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-5.0007
chr11	109011745	109011782	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	146835182	146835222	LINE	L1_Mur2	L1	chr5L1_Mur2146834958	ProperStrand	7	1	-4.3977
chr13	44869584	44869614	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr19	12682757	12682774	protein_coding	Gm4952	intron	ENSMUSG00000071633	NonProperStrand	1	1	-inf
chr5	110692047	110692181	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	chr9	15315192	15315312	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	2	-7.3463
chr4	132309952	132309997	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr3	88693942	88694053	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	8	1	-6.4425
chr6	48439218	48439234	protein_coding	Sspo	intron	ENSMUSG00000029797	NonProperStrand	5	chr2	5379253	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-7.1918
chr2	32963361	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr19	8252248	8252278	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	1	-6.4602
chr17	39846460	39846515	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	108868965	108869055	lincRNA	Gm17245	intron	ENSMUSG00000067626	NonProperStrand	3	1	-5.9338
chr7	13996020	13996110	LINE	L1Md_F2	L1	chr7L1Md_F213994775	ProperStrand	1	chr8	13417158	13417238	protein_coding	Grk1	utr3	ENSMUSG00000031450	ProperStrand	11	1	-inf
chr3	12514540	12514620	LINE	L1Md_T	L1	chr3L1Md_T12514563	NonProperStrand	1	chr3	12514373	12514463	LINE	L1_Mur3	L1	chr3L1_Mur312514365	NonProperStrand	1	1	-inf
chr17	39847598	39847632	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr3	108076415	108076631	protein_coding	Psma5	intron	ENSMUSG00000068749	NonProperStrand	1	1	-inf
chr17	39847443	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	50195525	50195543	protein_coding	Rftn1	intron	ENSMUSG00000039316	NonProperStrand	6	1	-3.8783
chr8	45935113	45935130	LINE	L1_Mus3	L1	chr8L1_Mus345934829	NonProperStrand	1	chr2	25284676	25285062	protein_coding	Abca2	intron	ENSMUSG00000026944	ProperStrand	1	1	-inf
chr13	88631893	88631983	LTR	RodERV21-int	ERV1	chr13RodERV21-int88631492	ProperStrand	1	chr12	67667929	67668009	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr19	7274761	7274897	protein_coding-noncoding	Otub1	utr3	ENSMUSG00000024767	ProperStrand	1	chr19	7267384	7267405	protein_coding	Macrod1	intron	ENSMUSG00000036278	NonProperStrand	2	1	-inf
chr17	39846046	39846203	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chr17	39843819	39843913	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	2	-5.8413
chr6	112475971	112475990	SINE	B1F1	Alu	chr6B1F1112475918	ProperStrand	1	chr8	70895814	70895833	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-inf
chr2	56061994	56062084	LINE	L1Md_F2	L1	chr2L1Md_F256061167	ProperStrand	1	chr2	56062160	56062240	LINE	L1Md_F2	L1	chr2L1Md_F256062011	ProperStrand	1	1	-inf
chr6	11590520	11590600	LINE	L1Md_F2	L1	chr6L1Md_F211589831	ProperStrand	1	chr6	11590869	11590959	LINE	Lx4B	L1	chr6Lx4B11590811	ProperStrand	1	1	-inf
chr9	35305367	35305447	protein_coding	Cdon	intron	ENSMUSG00000038119	NonProperStrand	2	chr9	3002075	3002165	protein_coding	Gm10722	intron	ENSMUSG00000091028	ProperStrand	1	1	-inf
chr11	106782681	106784146	SINE	B3	B2	chr11B3106783834	NonProperStrand	1	chr1	21250142	21250181	protein_coding	Gsta3	exon	ENSMUSG00000025934	NonProperStrand	1	1	-inf
chr11	109011748	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	133366286	133366307	protein_coding	Plp1	intron	ENSMUSG00000031425	ProperStrand	4	2	-9.6701
chrX	7867560	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	16	chr9	123462142	123462176	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-3.6260
chr19	24942235	24942286	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr2	5379291	5379338	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-4.4339
chr16	30177145	30177209	DNA	Tigger7	MER2_type	chr16Tigger730177116	NonProperStrand	1	chr17	39846696	39846749	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr14	75847932	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr7	141448814	141448904	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	1	-5.7570
chr4	129121395	129121485	LTR	RLTR1B-int	ERV1	chr4RLTR1B-int129121391	NonProperStrand	1	chr4	129121285	129121365	LTR	RLTR1C	ERV1	chr4RLTR1C129120889	NonProperStrand	1	1	-inf
chr13	114212967	114213057	LTR	MLT1C	MaLR	chr13MLT1C114212894	NonProperStrand	1	chr13	114212784	114212864	SINE	ID4	ID	chr13ID4114212777	ProperStrand	1	1	-inf
chr3	137828342	137828432	protein_coding	4930579F01Rik	intron	ENSMUSG00000012042	ProperStrand	2	chr19	5941169	5941249	protein_coding	Pola2	utr3	ENSMUSG00000024833	ProperStrand	3	2	-inf
chr11	69667875	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr7	109520147	109521351	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	4	-3.7918
chr8	40912678	40913971	LINE	L1Md_T	L1	chr8L1Md_T40909452	NonProperStrand	2	chr14	75284424	75284463	protein_coding	Lrch1	intron	ENSMUSG00000068015	NonProperStrand	5	2	-inf
chrX	95629621	95629711	LINE	L1_Mur3	L1	chrXL1_Mur395629400	NonProperStrand	2	chrX	95629027	95629107	LTR	RMER19B	ERVK	chrXRMER19B95628796	ProperStrand	2	2	-inf
chr11	105927276	105927366	antisense	5330430P22Rik	.	ENSMUSG00000085255	ProperStrand	1	chr11	105927557	105927637	protein_coding	Taco1	utr5	ENSMUSG00000001983	NonProperStrand	2	1	-inf
chr5	121205023	121205089	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr10	52468587	52468606	protein_coding	Slc35f1	intron	ENSMUSG00000038602	ProperStrand	6	1	-8.3184
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr5	148249372	148249390	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	5	1	-13.1024
chr16	23110802	23110867	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr13	51648197	51648219	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	1	-3.8729
chr3	123507995	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr1	131573791	131574026	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	2	-4.5984
chr11	109011648	109011677	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr13	119396868	119396934	LTR	MLT1C	MaLR	chr13MLT1C119396592	NonProperStrand	1	1	-inf
chr13	15485096	15485176	LINE	L1M4	L1	chr13L1M415485011	NonProperStrand	1	chr13	15484940	15485030	LTR	ORR1A2	MaLR	chr13ORR1A215484816	ProperStrand	1	1	-inf
chr9	123461840	123461877	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr7	19586598	19586716	protein_coding	Mypop	utr3	ENSMUSG00000048481	ProperStrand	2	1	-8.2644
chr15	82200928	82201008	LTR	RLTR14	ERV1	chr15RLTR1482200922	NonProperStrand	1	chr15	82201035	82201125	protein_coding	Cyp2d22	utr3	ENSMUSG00000061740	NonProperStrand	8	1	-inf
chr17	39847474	39847504	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chrX	6106941	6107011	protein_coding	Shroom4	intron	ENSMUSG00000068270	ProperStrand	1	1	-inf
chr12	18578301	18578391	DNA	URR1A	MER1_type	chr12URR1A18578250	NonProperStrand	1	chr12	24289050	24289130	pseudogene	Gm20474	.	ENSMUSG00000091973	NonProperStrand	2	1	-inf
chr11	6528051	6528164	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr17	24720796	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	2	-4.5830
chr14	70443541	70443558	protein_coding	Pebp4	intron	ENSMUSG00000022085	ProperStrand	2	chr9	15313859	15313877	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-10.7903
chr11	109011732	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	19883803	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	9	-7.6896
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	81325589	81325610	LTR	ORR1A0	MaLR	chr10ORR1A081325353	NonProperStrand	1	1	-inf
chr4	132352956	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chrX	74272495	74272568	SINE	B3	B2	chrXB374272477	ProperStrand	54	1	-4.9429
chr5	108710239	108710329	SINE	B3	B2	chr5B3108710192	ProperStrand	2	chr5	108710427	108710507	SINE	PB1D9	Alu	chr5PB1D9108710410	ProperStrand	2	2	-inf
chr6	22372593	22372683	LTR	ORR1B2-int	MaLR	chr6ORR1B2-int22372549	ProperStrand	1	chr6	22372396	22372476	LTR	ORR1B2	MaLR	chr6ORR1B222372181	ProperStrand	1	1	-inf
chr13	68579575	68579591	LTR	LTRIS_Mus	ERV1	chr13LTRIS_Mus68579178	ProperStrand	1	chr17	39847702	39847755	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr19	3735481	3735561	LINE	Lx9	L1	chr19Lx93735476	ProperStrand	1	chr19	3735936	3736025	LINE	Lx9	L1	chr19Lx93735828	ProperStrand	1	1	-inf
chr13	97096064	97096120	LINE	L1MC3	L1	chr13L1MC397096038	NonProperStrand	1	chr9	114504876	114504976	protein_coding	Cnot10	intron	ENSMUSG00000056167	ProperStrand	5	1	-inf
chr18	18866005	18866023	LINE	L1_Mus3	L1	chr18L1_Mus318864357	NonProperStrand	1	chr16	23110755	23110800	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-inf
chr5	146261153	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr13	90099033	90099075	protein_coding	Xrcc4	intron	ENSMUSG00000021615	NonProperStrand	12	1	-5.7818
chr16	35981617	35981645	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr1	34433138	34433156	protein_coding	Gm11158	intron	ENSMUSG00000079617	NonProperStrand	5	1	-11.1037
chr12	87437681	87437817	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	4	-8.8561
chr17	84281298	84281388	LTR	ORR1A3	MaLR	chr17ORR1A384281283	ProperStrand	1	chr2	151544613	151544693	protein_coding	Psmf1	intron	ENSMUSG00000032869	NonProperStrand	1	1	-inf
chr16	23111667	23111757	protein_coding	Eif4a2	intron	ENSMUSG00000022884	ProperStrand	149	chr6	88507242	88507322	protein_coding	Kbtbd12	intron	ENSMUSG00000033182	ProperStrand	3	1	-11.4444
chr17	39846466	39847123	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	99904793	99904811	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	16	2	-4.4839
chrX	20987171	20987251	LINE	L1_Mus3	L1	chrXL1_Mus320987094	NonProperStrand	2	chr15	59299966	59300056	protein_coding	Nsmce2	intron	ENSMUSG00000059586	ProperStrand	5	1	-19.5000
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr1	87481202	87481218	protein_coding	Sp110	intron	ENSMUSG00000070034	NonProperStrand	1	1	-inf
chr17	39847279	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr19	22852055	22852100	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	12	1	-4.5594
chr11	106501241	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr5	115560821	115560868	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	6	1	-9.2802
chr13	9834311	9834410	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr16	23110835	23110889	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.0018
chr1	79516994	79517074	LTR	MTD-int	MaLR	chr1MTD-int79516833	NonProperStrand	1	chr1	79516654	79516744	LTR	RMER20B	ERVK	chr1RMER20B79516550	NonProperStrand	1	1	-inf
chr17	39847054	39847319	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr16	23111693	23111756	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	2	-5.3564
chr13	80514550	80514640	LINE	L1_Mus2	L1	chr13L1_Mus280508931	ProperStrand	1	chr13	80514678	80514758	LTR	MTA_Mm	MaLR	chr13MTA_Mm80514626	NonProperStrand	1	1	-inf
chr3	96176385	96176435	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr13	112578242	112578696	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-4.5564
chr1	50841896	50841914	LINE	L1_Mm	L1	chr1L1_Mm50841812	ProperStrand	1	chr8	70895781	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-inf
chr18	35554568	35554585	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr3	88799864	88799944	protein_coding	Ash1l	intron	ENSMUSG00000028053	ProperStrand	2	1	-12.0542
chr9	123461976	123461993	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	ProperStrand	3	1	-14.8911
chr3	96176387	96176435	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr4	43544928	43545160	protein_coding	Tln1	exon	ENSMUSG00000028465	ProperStrand	1	1	-inf
chr4	90458293	90458373	LTR	ORR1A2-int	MaLR	chr4ORR1A2-int90456708	ProperStrand	1	chr4	54377133	54377223	Simple_repeat	(TCCC)n	Simple_repeat	chr4(TCCC)n54377081	NonProperStrand	1	1	-inf
chr8	31149897	31149950	LINE	L1Md_T	L1	chr8L1Md_T31146388	NonProperStrand	10	chr9	123462121	123462144	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-4.5433
chr9	85816853	85816933	LINE	Lx3C	L1	chr9Lx3C85816873	ProperStrand	1	chr9	85816709	85816799	Simple_repeat	(TTCC)n	Simple_repeat	chr9(TTCC)n85816648	NonProperStrand	1	1	-inf
chr7	28351503	28351581	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	chr8	126944900	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	2	-8.2585
chr17	39846952	39846982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	179587673	179587695	protein_coding	Cdh4	intron	ENSMUSG00000000305	ProperStrand	10	1	-3.3657
chr2	24651212	24652916	protein_coding	Ehmt1	intron	ENSMUSG00000036893	ProperStrand	3	chr9	118900613	118900629	protein_coding	Ctdspl	intron	ENSMUSG00000047409	ProperStrand	8	1	-17.4197
chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr9	20911437	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	11	1	-8.9948
chrX	118926399	118926489	LINE	L1VL2	L1	chrXL1VL2118925780	NonProperStrand	2	chrX	118926561	118926641	LINE	Lx3B	L1	chrXLx3B118926569	NonProperStrand	2	2	-inf
chr16	61056409	61056436	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	9	chr11	109012017	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	1	-9.4166
chr3	24762280	24762360	LINE	L1Md_F2	L1	chr3L1Md_F224762019	NonProperStrand	1	chr3	24762519	24762609	LINE	L1Md_F2	L1	chr3L1Md_F224762414	ProperStrand	1	1	-inf
chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr18	35557030	35557106	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-6.2332
chr6	115807980	115808081	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr8	13876109	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-5.4083
chr17	39846353	39847038	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	114851973	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	16	-3.2501
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr16	23111393	23111416	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-3.0621
chr17	39847329	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr18	57354822	57354844	protein_coding	Megf10	intron	ENSMUSG00000024593	NonProperStrand	7	1	-5.6609
chr10	122565920	122566000	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	9	chr6	123058466	123058556	protein_coding	Clec4a2	intron	ENSMUSG00000030148	NonProperStrand	1	1	-inf
chrX	87238384	87238403	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr11	6620350	6620438	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	1	-7.1255
chr1	126567916	126567997	DNA	MER63D	AcHobo	chr1MER63D126567911	NonProperStrand	1	chr1	126567695	126567785	SINE	B4	B4	chr1B4126567573	NonProperStrand	1	1	-inf
chr11	78181689	78181734	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	9	chr17	24720771	24720861	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-7.4635
chr15	90542307	90542397	LTR	RLTR16	ERVK	chr15RLTR1690542169	ProperStrand	1	chr13	10157891	10157971	SINE	B3	B2	chr13B310157862	ProperStrand	1	1	-inf
chr6	26834253	26834343	LINE	MusHAL1	L1	chr6MusHAL126833945	ProperStrand	1	chr4	98444473	98444553	protein_coding	Kank4	intron	ENSMUSG00000035407	NonProperStrand	1	1	-inf
chr14	55540459	55540476	protein_coding	Efs	intron	ENSMUSG00000022203	ProperStrand	8	chr9	15315201	15315291	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-7.4762
chr9	96313929	96314009	SINE	B1_Mus2	Alu	chr9B1_Mus296313861	NonProperStrand	2	chr9	96159989	96160079	protein_coding	Tfdp2	intron	ENSMUSG00000032411	ProperStrand	10	2	-inf
chr7	25489357	25489437	LTR	RLTR19-int	ERVK	chr7RLTR19-int25488139	ProperStrand	1	chr7	25489667	25489757	LTR	RLTR19-int	ERVK	chr7RLTR19-int25489563	ProperStrand	1	1	-inf
chr17	39847477	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	76184151	76184167	LTR	MLT1F2	MaLR	chr5MLT1F276184111	NonProperStrand	4	1	-4.7422
chr8	122020589	122020605	protein_coding	Slc38a8	intron	ENSMUSG00000034224	NonProperStrand	1	chr7	127527903	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-inf
chr16	38010966	38010984	Simple_repeat	(GAAA)n	Simple_repeat	chr16(GAAA)n38010912	NonProperStrand	1	chr13	97190550	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr10	18525993	18526010	LTR	MYSERV6-int	ERVK	chr10MYSERV6-int18525694	ProperStrand	2	chr6	124999317	124999456	protein_coding-noncoding	Ing4	utr3	ENSMUSG00000030330	ProperStrand	2	2	-inf
chr13	75083211	75083292	LTR	RMER16-int	ERVK	chr13RMER16-int75081225	ProperStrand	1	chr13	75083484	75083574	LTR	RMER16-int	ERVK	chr13RMER16-int75083456	ProperStrand	1	1	-inf
chr11	109011656	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	92855000	92859271	protein_coding	Rab17	utr3	ENSMUSG00000026304	NonProperStrand	2	2	-inf
chr8	57958347	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr5	121205042	121205116	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-4.3197
chr11	109011791	109011827	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr18	57878721	57878758	protein_coding	1700011I03Rik	intron	ENSMUSG00000058925	ProperStrand	4	1	-5.5999
chr8	93822267	93822357	protein_coding	Rpgrip1l	intron	ENSMUSG00000033282	ProperStrand	2	chr17	65702159	65702239	protein_coding	Tmem232	intron	ENSMUSG00000045036	ProperStrand	9	1	-18.2667
chr5	146260994	146261021	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr2	172825339	172825357	SINE	B3	B2	chr2B3172825204	ProperStrand	3	1	-8.8310
chr17	39847330	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr8	25720325	25720352	protein_coding	Adam18	intron	ENSMUSG00000031552	NonProperStrand	2	1	-6.4812
chr18	5524444	5524463	processed_transcript	RP23-278M16.2	.	ENSMUSG00000093709	ProperStrand	2	chr7	28351534	28351580	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-14.2727
chr11	109011748	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	20562460	20562476	protein_coding	Pkhd1	intron	ENSMUSG00000043760	NonProperStrand	7	1	-4.3977
chr9	19657698	19657788	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	chrX	147306827	147306907	Other	RMER1C	Other	chrXRMER1C147306532	ProperStrand	1	1	-inf
chr11	69445273	69445353	SINE	B2_Mm2	B2	chr11B2_Mm269445260	ProperStrand	1	chr11	69445072	69445162	pseudogene	Gm12309	.	ENSMUSG00000083300	ProperStrand	1	1	-inf
chr7	139569467	139569557	protein_coding	Fgfr2	intron	ENSMUSG00000030849	NonProperStrand	25	chr6	125102572	125102834	protein_coding	Iffo1	intron	ENSMUSG00000038271	ProperStrand	2	1	-16.1448
chr17	39846352	39847080	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	24720130	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	18	-5.5976
chr3	74999747	74999827	LINE	L1Md_F2	L1	chr3L1Md_F274995441	ProperStrand	1	chr3	75000187	75000277	LINE	L1_Mur2	L1	chr3L1_Mur275000131	NonProperStrand	1	1	-inf
chr4	96652587	96652677	LINE	L1Md_F2	L1	chr4L1Md_F296651905	NonProperStrand	1	chr4	96652992	96653072	LTR	MLT-int	MaLR	chr4MLT-int96652941	ProperStrand	1	1	-inf
chr17	39846523	39846544	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	92981896	92981913	LTR	MTD	MaLR	chr8MTD92981586	NonProperStrand	6	1	-4.3847
chr16	57391498	57391578	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	chr6	120888821	120888911	protein_coding	Mical3	intron	ENSMUSG00000051586	ProperStrand	2	1	-15.8421
chr3	96724319	96724386	protein_coding	Gja8	intron	ENSMUSG00000049908	ProperStrand	8	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-6.9355
chr3	123507994	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr16	18402914	18402949	protein_coding	Arvcf	intron	ENSMUSG00000000325	ProperStrand	5	1	-7.6581
chr16	25508020	25508100	LINE	Lx9	L1	chr16Lx925507834	ProperStrand	1	chr16	25508231	25508321	SINE	B1_Mus1	Alu	chr16B1_Mus125508197	NonProperStrand	1	1	-inf
chrX	37082963	37083003	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr4	132309940	132310069	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	3	-5.1079
chrX	94127624	94127704	LINE	L1Md_F	L1	chrXL1Md_F94127577	ProperStrand	1	chrX	94127456	94127546	LTR	RLTR13D1	ERVK	chrXRLTR13D194126620	NonProperStrand	1	1	-inf
chr17	39847280	39847313	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr19	17118311	17118327	protein_coding	Prune2	intron	ENSMUSG00000039126	ProperStrand	2	1	-8.6616
chr11	109011794	109011832	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	162407397	162477668	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	NonProperStrand	8	1	-4.1268
chr13	71958633	71958649	LINE	L1_Mus1	L1	chr13L1_Mus171958564	NonProperStrand	1	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-inf
chr17	39847278	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	20806561	20806577	protein_coding	Arhgap21	intron	ENSMUSG00000036591	NonProperStrand	1	1	-inf
chr6	59033966	59034056	LINE	Lx2B	L1	chr6Lx2B59032739	NonProperStrand	1	chr6	59034150	59034230	LINE	Lx2B	L1	chr6Lx2B59034101	NonProperStrand	1	1	-inf
chrX	102477890	102477916	LINE	Lx8	L1	chrXLx8102477438	NonProperStrand	1	chrX	102480704	102480794	LINE	Lx9	L1	chrXLx9102480000	ProperStrand	1	1	-inf
chr11	109011808	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	159877566	159877587	LINE	Lx8	L1	chrXLx8159877561	NonProperStrand	2	1	-7.3577
chr8	78887644	78887734	LINE	Lx7	L1	chr8Lx778887270	ProperStrand	1	chr8	78887794	78887874	LTR	ORR1A2	MaLR	chr8ORR1A278887732	NonProperStrand	1	1	-inf
chr6	48086457	48086474	lincRNA	Gm16630	intron	ENSMUSG00000086383	ProperStrand	4	chr9	15313802	15313825	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-9.0046
chr18	60175374	60175464	LINE	L1_Mur3	L1	chr18L1_Mur360175336	ProperStrand	1	chr18	60175012	60175090	Other	RMER1B	Other	chr18RMER1B60174027	ProperStrand	1	1	-inf
chr17	39847207	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr8	69103700	69103729	LTR	RLTR41	ERV1	chr8RLTR4169103690	ProperStrand	1	1	-inf
chr2	15438189	15438207	Simple_repeat	(TTTG)n	Simple_repeat	chr2(TTTG)n15438186	ProperStrand	1	chr16	23110912	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr17	55652228	55652308	protein_coding	St6gal2	utr3	ENSMUSG00000024172	ProperStrand	1	chr1	162326032	162326122	protein_coding	Rabgap1l	intron	ENSMUSG00000026721	ProperStrand	6	1	-inf
chr14	75847946	75847993	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr18	35557049	35557224	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	3	-8.5571
chr15	53246119	53246199	LINE	Lx8	L1	chr15Lx853245954	ProperStrand	1	chr9	60777721	60777811	LTR	RMER15	ERVL	chr9RMER1560777634	NonProperStrand	1	1	-inf
chr2	130276254	130276297	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr5	76959332	76959421	protein_coding	Exoc1	intron	ENSMUSG00000036435	ProperStrand	4	1	-9.6304
chr11	100959215	100959320	protein_coding	Fam134c	utr3	ENSMUSG00000017802	ProperStrand	5	chr2	90395135	90395174	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-6.6729
chr13	35429866	35429946	LINE	L1_Mur3	L1	chr13L1_Mur335429651	ProperStrand	1	chr13	35923323	35923413	protein_coding	Cdyl	intron	ENSMUSG00000059288	NonProperStrand	3	1	-inf
chr4	132352441	132352528	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	2	-5.0354
chr1	78075937	78076017	LINE	L1_Mus4	L1	chr1L1_Mus478074835	NonProperStrand	1	chr1	78076188	78076278	LTR	MLT1A0	MaLR	chr1MLT1A078076152	NonProperStrand	1	1	-inf
chr11	68902412	68902430	protein_coding-noncoding	Vamp2	utr5	ENSMUSG00000020894	ProperStrand	1	chr2	90395141	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr7	69747158	69747248	LINE	L1_Mm	L1	chr7L1_Mm69746927	NonProperStrand	1	chr7	69747305	69747385	LINE	L1_Mus3	L1	chr7L1_Mus369747323	NonProperStrand	1	1	-inf
chr16	35981625	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr12	54195829	54195917	protein_coding	Akap6	intron	ENSMUSG00000061603	NonProperStrand	5	1	-11.1037
chr17	39847028	39847128	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr15	100347045	100347066	protein_coding	Tfcp2	intron	ENSMUSG00000009733	NonProperStrand	1	1	-inf
chr10	23785399	23785415	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	1	-3.7257
chr6	116414590	116414606	LINE	Lx7	L1	chr6Lx7116413758	NonProperStrand	1	chr5	134686731	134688347	protein_coding	Gtf2ird2	intron	ENSMUSG00000015942	NonProperStrand	1	1	-inf
chr6	4515496	4515670	Simple_repeat	(TG)n	Simple_repeat	chr6(TG)n4515626	ProperStrand	1	chr17	24719674	24719764	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-inf
chr8	63404878	63404968	protein_coding-noncoding	Clcn3	utr3	ENSMUSG00000004319	NonProperStrand	2	chr7	103550779	103550859	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	17	1	-16.9369
chr8	120560292	120560351	LTR	RMER19B	ERVK	chr8RMER19B120560178	ProperStrand	1	chr8	120560682	120560773	LTR	RMER19B	ERVK	chr8RMER19B120560440	ProperStrand	1	1	-inf
chr13	103467260	103467340	LTR	ORR1A1	MaLR	chr13ORR1A1103467239	ProperStrand	1	chr13	103523621	103523711	protein_coding	Cd180	intron	ENSMUSG00000021624	ProperStrand	1	1	-inf
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr5	8076271	8076287	protein_coding	Adam22	utr3	ENSMUSG00000040537	ProperStrand	1	1	-inf
chr5	114851994	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr17	24719718	24719809	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	4	-6.9184
chr9	77716081	77716171	LTR	MMERVK10C-int	ERVK	chr9MMERVK10C-int77715991	NonProperStrand	1	chr9	77716389	77716469	LTR	MMERVK10C-int	ERVK	chr9MMERVK10C-int77716329	NonProperStrand	1	1	-inf
chr3	153987612	153987692	protein_coding-noncoding	Lhx8	utr3	ENSMUSG00000093486	ProperStrand	1	chr3	153987445	153987535	protein_coding	Lhx8	intron	ENSMUSG00000093486	ProperStrand	1	1	-inf
chr17	39846771	39846851	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	140739975	140740065	protein_coding	Mad1l1	intron	ENSMUSG00000029554	NonProperStrand	9	1	-3.5690
chr6	52189838	52189855	protein_coding	Hoxa10	intron	ENSMUSG00000000938	NonProperStrand	3	chr5	114851993	114852039	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-9.7229
chr12	40430177	40430292	Other	RMER1A	Other	chr12RMER1A40429839	ProperStrand	1	chr9	123461967	123461988	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr3	84040501	84040518	protein_coding	Trim2	intron	ENSMUSG00000027993	NonProperStrand	4	chr8	95746116	95746195	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-12.6837
chr17	39847428	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr8	70895757	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	23	-7.4608
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr2	91596119	91596150	protein_coding	Ambra1	intron	ENSMUSG00000040506	ProperStrand	11	1	-6.0284
chr13	106722604	106722694	LINE	L1_Mur2	L1	chr13L1_Mur2106722523	ProperStrand	1	chr13	106722325	106722405	LTR	RMER12	ERVK	chr13RMER12106722188	ProperStrand	1	1	-inf
chr1	150674400	150674480	LINE	Lx9	L1	chr1Lx9150674344	NonProperStrand	1	chr1	150674551	150674641	LINE	Lx9	L1	chr1Lx9150674543	ProperStrand	1	1	-inf
chr2	5379266	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr8	126944846	126944932	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	4	-4.4899
chr4	117154103	117154160	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	13	chr16	23111700	23111738	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	1	-11.7115
chr13	49684298	49684377	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	chr1	89461837	89461855	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	3	1	-13.9459
chr2	107044839	107044929	LINE	Lx5	L1	chr2Lx5107044626	ProperStrand	1	chr2	107044475	107044555	Simple_repeat	(TC)n	Simple_repeat	chr2(TC)n107044354	ProperStrand	1	1	-inf
chr15	51883317	51883407	LINE	Lx	L1	chr15Lx51882808	ProperStrand	1	chr18	21787374	21787454	protein_coding	Klhl14	intron	ENSMUSG00000042514	ProperStrand	2	1	-inf
chrX	7790008	7790025	LINE	L1MB2	L1	chrXL1MB27789909	NonProperStrand	1	chr15	34440848	34440882	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-inf
chrX	129475124	129475214	LINE	L1Md_F3	L1	chrXL1Md_F3129475072	NonProperStrand	1	chrX	129474875	129474955	LINE	L1_Mus3	L1	chrXL1_Mus3129474433	NonProperStrand	1	1	-inf
chr10	105238433	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-3.6431
chr17	39848098	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr15	86194886	86194942	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-4.9725
chr11	105927858	105927875	protein_coding	Taco1	intron	ENSMUSG00000001983	NonProperStrand	2	chr7	109520168	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-10.7680
chr7	117039937	117040017	protein_coding-noncoding	Dennd5a	utr3	ENSMUSG00000035901	ProperStrand	1	chr7	117039593	117039683	protein_coding	Dennd5a	intron	ENSMUSG00000035901	ProperStrand	1	1	-inf
chr17	39847550	39847640	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	102107389	102107455	SINE	ID_B1	B4	chr2ID_B1102107326	NonProperStrand	1	1	-inf
chr17	39847200	39847218	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	189126291	189126309	protein_coding	Gpatch2	intron	ENSMUSG00000039210	ProperStrand	4	1	-6.8874
chr10	5932792	5932882	protein_coding-noncoding	Rmnd1	utr5	ENSMUSG00000019763	ProperStrand	1	chr10	5932409	5932489	protein_coding	Rmnd1	intron	ENSMUSG00000019763	ProperStrand	2	1	-inf
chr8	54948153	54948243	LINE	L1Md_F2	L1	chr8L1Md_F254947820	NonProperStrand	1	chr8	53162323	53162403	LINE	Lx2	L1	chr8Lx253162182	ProperStrand	1	1	-inf
chr13	8775374	8775464	LTR	MTD	MaLR	chr13MTD8775367	ProperStrand	1	chr13	8979150	8979230	protein_coding	Gtpbp4	exon	ENSMUSG00000021149	NonProperStrand	1	1	-inf
chr2	121308332	121308348	LINE	Lx2	L1	chr2Lx2121307384	NonProperStrand	5	chr16	23110893	23110931	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.3911
chr9	21739053	21739133	protein_coding	Ccdc159	intron	ENSMUSG00000006241	ProperStrand	2	chr9	21746125	21746215	protein_coding	BC018242	intron	ENSMUSG00000040563	ProperStrand	1	1	-inf
chr17	63864548	63864567	LINE	Lx9	L1	chr17Lx963864485	ProperStrand	1	chr11	106501273	106501326	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-inf
chr9	123461967	123461991	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr11	50840581	50841436	protein_coding	Olfr54	exon	ENSMUSG00000059397	NonProperStrand	1	1	-inf
chr5	59418545	59418564	LTR	RLTR17	ERVK	chr5RLTR1759418334	ProperStrand	1	chr16	11144058	11144148	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-inf
chr10	37701673	37701765	LINE	L1Md_F2	L1	chr10L1Md_F237699627	ProperStrand	1	chr1	79607160	79607240	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	4	1	-inf
chr19	6365743	6365785	protein_coding	Sf1	exon	ENSMUSG00000024949	ProperStrand	1	chr1	131573998	131574034	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-inf
chr9	103130282	103130372	protein_coding	Trf	exon	ENSMUSG00000032554	NonProperStrand	1	chr9	103130062	103130142	protein_coding	Gm20425	intron	ENSMUSG00000090639	NonProperStrand	1	1	-inf
chr11	99017070	99017119	LTR	RLTR25B	ERVK	chr11RLTR25B99017055	ProperStrand	18	chr2	90395146	90395180	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-4.0430
chr16	96773362	96773442	LTR	MTC-int	MaLR	chr16MTC-int96773198	ProperStrand	1	chr16	96773486	96773576	LTR	MTC	MaLR	chr16MTC96773456	ProperStrand	1	1	-inf
chr17	39846953	39846982	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	57999463	57999480	protein_coding	Txndc8	intron	ENSMUSG00000038709	NonProperStrand	1	1	-inf
chr5	146260993	146261189	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr3	62159106	62159352	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	2	-8.6301
chr16	89877114	89877154	protein_coding	Tiam1	intron	ENSMUSG00000002489	ProperStrand	6	chr15	34440845	34440880	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-9.1910
chr17	71631341	71631365	lincRNA	Gm16724	intron	ENSMUSG00000085916	ProperStrand	11	chr9	123462051	123462079	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-4.3533
chr17	39847278	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	125711865	125711884	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	1	-3.0178
chr17	34950980	34951020	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr11	69667884	69667965	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-3.8080
chr17	39846357	39846377	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr14	79862700	79862717	protein_coding	Wbp4	intron	ENSMUSG00000022023	NonProperStrand	5	1	-4.7701
chr1	172562099	172562115	LTR	ERVL-int	ERVL	chr1ERVL-int172561704	ProperStrand	5	chr9	123461933	123461989	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-5.9940
chr6	142573649	142573729	protein_coding	Abcc9	intron	ENSMUSG00000030249	NonProperStrand	3	chr6	142573988	142574078	protein_coding	5330439B14Rik	exon	ENSMUSG00000041614	ProperStrand	1	1	-inf
chr7	66458805	66458895	LINE	L1_Rod	L1	chr7L1_Rod66458539	NonProperStrand	1	chr7	66459138	66459218	LTR	IAPLTR1a_Mm	ERVK	chr7IAPLTR1a_Mm66459155	ProperStrand	2	1	-inf
chr3	85477365	85477445	protein_coding-noncoding	Fam160a1	utr3	ENSMUSG00000051000	ProperStrand	1	chr3	85476812	85476902	protein_coding	Fam160a1	exon	ENSMUSG00000051000	ProperStrand	2	1	-inf
chr1	113904189	113904245	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	7	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-7.2192
chr4	82102670	82102760	protein_coding	Nfib	intron	ENSMUSG00000008575	ProperStrand	3	chr17	22197953	22198033	protein_coding	Zfp943	intron	ENSMUSG00000053347	NonProperStrand	3	1	-19.6922
chr11	4788447	4788527	protein_coding	Nipsnap1	intron	ENSMUSG00000034285	NonProperStrand	1	chr11	3586351	3586441	protein_coding	Morc2a	intron	ENSMUSG00000034543	ProperStrand	1	1	-inf
chr17	39847956	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	56414000	56414074	protein_coding	Ticam1	intron	ENSMUSG00000047123	ProperStrand	1	1	-inf
chr13	54190151	54190181	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	chr11	116843218	116843234	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-9.1501
chr7	88803412	88803431	protein_coding	Homer2	intron	ENSMUSG00000025813	ProperStrand	1	chr7	109520225	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-inf
chr5	146260994	146261018	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	119932622	119932641	protein_coding	Azi1	intron	ENSMUSG00000039781	ProperStrand	1	1	-inf
chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr10	39959641	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	1	-4.4292
chr10	7126097	7126114	LINE	L1Md_F2	L1	chr10L1Md_F27122765	ProperStrand	4	chr2	158356446	158356503	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-10.9803
chr11	116935430	116935510	LTR	RMER17A	ERVK	chr11RMER17A116935375	ProperStrand	1	chr11	116935103	116935193	SINE	B2_Mm1a	B2	chr11B2_Mm1a116935094	ProperStrand	1	1	-inf
chrX	99467635	99467735	lincRNA	Gm14858	intron	ENSMUSG00000085568	NonProperStrand	1	chr9	15313811	15313830	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr1	72858539	72858619	Low_complexity	GA-rich	Low_complexity	chr1GA-rich72858531	NonProperStrand	1	chr1	72858402	72858492	SINE	B1_Mm	Alu	chr1B1_Mm72858384	NonProperStrand	1	1	-inf
chr9	123462128	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr10	69946069	69946124	protein_coding	Fam13c	intron	ENSMUSG00000043259	ProperStrand	2	1	-8.2644
chr9	123462125	123462166	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr8	72496832	72496852	protein_coding	Gatad2a	intron	ENSMUSG00000036180	ProperStrand	1	1	-inf
chr17	39848099	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr10	105238492	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-4.1207
chr1	90546405	90546485	DNA	URR1B	MER1_type	chr1URR1B90546359	NonProperStrand	1	chr1	90546142	90546232	LTR	MLT2D	ERVL	chr1MLT2D90546060	ProperStrand	1	1	-inf
chr17	74407256	74407273	DNA	MER82	MER2_type	chr17MER8274407187	ProperStrand	1	chr15	34440845	34440872	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-inf
chr5	146261143	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	113901596	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	2	-5.6775
chr11	109011742	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr18	35554504	35557228	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	13	-7.8963
chr4	44713710	44713728	protein_coding	Pax5	intron	ENSMUSG00000014030	NonProperStrand	6	chr3	152449005	152449075	protein_coding	Pigk	utr3	ENSMUSG00000039047	ProperStrand	5	1	-16.8393
chr16	90735435	90735515	SINE	B4	B4	chr16B490735362	ProperStrand	1	chr16	90735642	90735732	Simple_repeat	(GA)n	Simple_repeat	chr16(GA)n90735639	ProperStrand	1	1	-inf
chr3	123508022	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	ProperStrand	2	chr2	90395153	90395189	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-8.9527
chr17	39847850	39847892	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	32229430	32229508	pseudogene	Pdxk-ps	.	ENSMUSG00000002791	ProperStrand	2	1	-6.4812
chr19	12587629	12587719	LINE	L1MD	L1	chr19L1MD12587610	NonProperStrand	1	chr8	120144303	120144383	protein_coding	Plcg2	intron	ENSMUSG00000034330	NonProperStrand	4	1	-inf
chr17	35162566	35162669	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	4	-5.2695
chr8	48537820	48537900	LTR	IAPEz-int	ERVK	chr8IAPEz-int48537705	ProperStrand	3	chr8	48274394	48274484	protein_coding	Stox2	intron	ENSMUSG00000038143	NonProperStrand	5	3	-inf
chr17	24720773	24720794	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr4	57908864	57908880	protein_coding	Akap2	utr3	ENSMUSG00000038729	ProperStrand	3	1	-9.9324
chr10	23785346	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr2	32963312	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	5	-5.1218
chr12	99645565	99645665	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr13	44869971	44870016	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-3.3095
chr17	39847037	39847145	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr2	76965217	76967058	protein_coding	Ccdc141	intron	ENSMUSG00000044033	NonProperStrand	6	1	-10.2891
chr7	109520119	109520147	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr2	79291994	79292010	protein_coding	Cerkl	intron	ENSMUSG00000075256	NonProperStrand	3	1	-9.6724
chr19	59195068	59195158	SINE	B1_Mur1	Alu	chr19B1_Mur159195004	NonProperStrand	1	chr19	59195384	59195464	SINE	B2_Mm2	B2	chr19B2_Mm259195308	ProperStrand	1	1	-inf
chr5	150074310	150074400	LINE	Lx9	L1	chr5Lx9150074239	ProperStrand	1	chr5	150074483	150074563	Simple_repeat	(TA)n	Simple_repeat	chr5(TA)n150074445	NonProperStrand	1	1	-inf
chr17	39847441	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	118220519	118220599	Low_complexity	G-rich	Low_complexity	chr4G-rich118220195	NonProperStrand	1	1	-inf
chr11	68202640	68202730	protein_coding	Ntn1	intron	ENSMUSG00000020902	ProperStrand	11	chr15	82727594	82727674	protein_coding	Tcf20	intron	ENSMUSG00000041852	ProperStrand	1	1	-inf
chr7	18892328	18892513	LINE	L1VL2	L1	chr7L1VL218892250	NonProperStrand	1	chr5	146261057	146261102	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-inf
chr1	122357168	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr16	23110382	23110790	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	2	-6.2556
chr19	8723999	8724032	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-3.6609
chr5	130499614	130499694	protein_coding-noncoding	Asl	utr3	ENSMUSG00000025533	NonProperStrand	1	chr5	130499898	130499988	protein_coding	Asl	utr5	ENSMUSG00000025533	NonProperStrand	1	1	-inf
chr9	21141029	21141109	LTR	RMER19A	ERVK	chr9RMER19A21140913	ProperStrand	3	chr9	21139940	21140824	SINE	B2_Mm2	B2	chr9B2_Mm221140627	NonProperStrand	3	3	-inf
chr13	97190563	97190608	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr6	63215712	63215733	protein_coding	Grid2	intron	ENSMUSG00000071424	NonProperStrand	11	1	-5.9417
chr7	141360000	141360016	protein_coding	Adam12	intron	ENSMUSG00000054555	NonProperStrand	9	chr8	16266746	16266764	protein_coding	Csmd1	intron	ENSMUSG00000060924	NonProperStrand	12	1	-14.0773
chr6	39033556	39033646	protein_coding-noncoding	Tbxas1	utr5	ENSMUSG00000029925	NonProperStrand	1	chr6	39033815	39033895	protein_coding	Tbxas1	intron	ENSMUSG00000029925	NonProperStrand	4	1	-inf
chr7	116856062	116856152	protein_coding	BC051019	intron	ENSMUSG00000031022	NonProperStrand	1	chr7	116855457	116855537	protein_coding	D930014E17Rik	utr3	ENSMUSG00000031023	ProperStrand	1	1	-inf
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	68662984	68663001	protein_coding	Ndel1	intron	ENSMUSG00000018736	NonProperStrand	3	1	-6.2761
chr14	75847904	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr8	116632042	116632070	SINE	MIR	MIR	chr8MIR116632007	NonProperStrand	1	1	-inf
chr11	109011751	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	17671368	17671387	protein_coding	Lnpep	intron	ENSMUSG00000023845	ProperStrand	3	1	-6.2761
chr9	17987812	17987838	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	13	chr11	115123815	115123834	protein_coding	Grin2c	intron	ENSMUSG00000020734	ProperStrand	2	1	-17.4836
chr3	123507991	123508016	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr7	127527922	127528000	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-4.5098
chr11	81489099	81489179	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	16	chr11	110857320	110857410	protein_coding	Kcnj16	intron	ENSMUSG00000051497	ProperStrand	1	1	-inf
chr9	76620113	76620203	LTR	RLTR13B4	ERVK	chr9RLTR13B476619330	ProperStrand	1	chr12	82742224	82742304	protein_coding	Ttc9	intron	ENSMUSG00000042734	ProperStrand	1	1	-inf
chr7	141448813	141448886	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr17	24719694	24719740	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-5.0488
chr15	67979100	67979117	protein_coding	Zfat	intron	ENSMUSG00000022335	ProperStrand	2	chr4	145745108	145745126	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-15.6422
chr14	28511296	28511322	protein_coding	Erc2	intron	ENSMUSG00000040640	NonProperStrand	10	chr7	127378108	127378126	protein_coding	Abca14	intron	ENSMUSG00000062017	ProperStrand	1	1	-inf
chr13	44869616	44869664	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr3	88693979	88694004	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	8	1	-6.6679
chr15	85861575	85861594	protein_coding	Celsr1	exon	ENSMUSG00000016028	NonProperStrand	1	chr9	123462128	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr15	34440847	34440873	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr1	91366483	91366502	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	1	-7.2606
chr18	68534877	68534967	LINE	L1Md_T	L1	chr18L1Md_T68534889	NonProperStrand	1	chr18	68534568	68534648	LTR	MTD	MaLR	chr18MTD68534368	NonProperStrand	1	1	-inf
chr16	73378232	73378312	LTR	MLT1C	MaLR	chr16MLT1C73378106	ProperStrand	1	chr16	73377938	73378028	SINE	RSINE1	B4	chr16RSINE173377874	NonProperStrand	1	1	-inf
chr3	123508037	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr6	82042912	82042932	protein_coding	Fam176a	utr3	ENSMUSG00000035104	ProperStrand	4	1	-8.1644
chr17	39846353	39846371	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	143732230	143732246	protein_coding	Fscn1	exon	ENSMUSG00000029581	NonProperStrand	1	1	-inf
chr11	47164971	47165051	protein_coding-noncoding	Sgcd	utr3	ENSMUSG00000020354	ProperStrand	1	chr11	47164627	47164717	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	14	1	-inf
chr14	32191964	32192016	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr16	23110837	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.1629
chr17	39847443	39847796	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr15	80078500	80082921	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	6	-5.1064
chr14	31014331	31014361	protein_coding	Cacna1d	intron	ENSMUSG00000015968	ProperStrand	24	chr13	112578183	112578273	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-4.7854
chr9	39458854	39458944	LINE	L1_Mur3	L1	chr9L1_Mur339458801	NonProperStrand	1	chr9	39458633	39458713	LINE	Lx5	L1	chr9Lx539457996	NonProperStrand	1	1	-inf
chr7	144440080	144441780	protein_coding	Ebf3	intron	ENSMUSG00000010476	ProperStrand	3	chr13	97190564	97190608	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.8129
chr5	30060651	30060731	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	6	chr18	21768053	21768143	protein_coding	Klhl14	intron	ENSMUSG00000042514	NonProperStrand	3	1	-18.0454
chr12	99645595	99645649	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr11	106501290	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	1	-5.1987
chr17	70853682	70853701	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	19	chr13	44869627	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-4.9082
mmu-miR-1912-5p	2	17	miRNA	mmu-miR-1912-5p	.	mmu-miR-1912-5p	NonProperStrand	9	chr9	123461925	123462005	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-4.7558
chrX	62191770	62191850	LTR	LTRIS2	ERV1	chrXLTRIS262191365	ProperStrand	1	chrX	62192232	62192322	LTR	RMER6C	ERVK	chrXRMER6C62191919	ProperStrand	1	1	-inf
chr11	109011656	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	70895758	70895890	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	17	-7.5500
chr17	39847918	39847998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr13	112578179	112578268	protein_coding	Map3k1	intron	ENSMUSG00000021754	NonProperStrand	2	1	-13.4248
chr13	24802120	24802253	protein_coding	Fam65b	intron	ENSMUSG00000036006	NonProperStrand	1	chr12	110695669	110696256	protein_coding	Dlk1	intron	ENSMUSG00000040856	ProperStrand	2	1	-inf
chr15	34440848	34440869	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr4	145745106	145745124	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-5.7373
chr13	96336765	96336845	LTR	RLTR10E	ERVK	chr13RLTR10E96336737	NonProperStrand	1	chr13	96336617	96336707	LTR	RLTR28	ERVL	chr13RLTR2896336270	NonProperStrand	1	1	-inf
chr8	80407339	80407419	LINE	L1VL2	L1	chr8L1VL280406428	ProperStrand	1	chr14	33967712	33967802	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	1	-inf
chr4	55176524	55176614	lincRNA	Gm12514	intron	ENSMUSG00000087614	NonProperStrand	1	chr4	55176318	55176398	pseudogene	Gm12509	.	ENSMUSG00000081177	ProperStrand	1	1	-inf
chr15	34440790	34440921	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr8	13876101	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	2	-6.6777
chr7	47186440	47186520	SINE	PB1D10	Alu	chr7PB1D1047186421	NonProperStrand	5	chr7	103550715	103550805	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	17	1	-14.6350
chr13	112578232	112578306	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr5	53998709	53998728	protein_coding	Rbpj	intron	ENSMUSG00000039191	ProperStrand	6	1	-7.6295
chr10	23785399	23785427	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr19	42075386	42075402	protein_coding	Ubtd1	intron	ENSMUSG00000025171	ProperStrand	2	1	-10.3808
chr11	106501242	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr17	24720782	24720869	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	3	-4.7538
chr8	104796541	104796557	Simple_repeat	(GAAA)n	Simple_repeat	chr8(GAAA)n104796507	ProperStrand	1	chr14	12493841	12493859	protein_coding	Ptprg	intron	ENSMUSG00000021745	NonProperStrand	5	1	-inf
chr13	104050773	104050789	protein_coding	Mast4	intron	ENSMUSG00000034751	ProperStrand	8	chr19	8888597	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-7.6323
chr6	125097100	125097190	protein_coding	Iffo1	intron	ENSMUSG00000038271	ProperStrand	2	chr2	5379272	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-9.4768
chr8	109117447	109117527	LTR	RLTR19-int	ERVK	chr8RLTR19-int109117175	NonProperStrand	1	chr8	109117898	109117988	SINE	B1_Mus2	Alu	chr8B1_Mus2109117868	NonProperStrand	1	1	-inf
chr18	38390499	38390579	LINE	L1MB5	L1	chr18L1MB538390506	NonProperStrand	1	chr18	38390323	38390413	SINE	PB1D10	Alu	chr18PB1D1038390307	NonProperStrand	1	1	-inf
chr2	90395142	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	137568196	137568312	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	13	1	-4.6792
chr7	5390051	5390141	LINE	L1Md_F2	L1	chr7L1Md_F25389166	NonProperStrand	1	chr7	5390524	5390604	LINE	L1Md_F2	L1	chr7L1Md_F25390299	NonProperStrand	1	1	-inf
chr1	150795539	150795629	LINE	L1_Mur3	L1	chr1L1_Mur3150795389	NonProperStrand	1	chr1	150795237	150795317	SINE	B2_Mm2	B2	chr1B2_Mm2150795208	ProperStrand	1	1	-inf
chrX	37082966	37083003	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr6	131380324	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	1	-7.7020
chr18	60439577	60439667	LINE	Lx2A1	L1	chr18Lx2A160438160	ProperStrand	1	chr18	60376045	60376125	protein_coding	Gm4951	intron	ENSMUSG00000073555	ProperStrand	2	1	-inf
chr12	9802605	9802695	LINE	Lx8	L1	chr12Lx89802538	ProperStrand	1	chr12	9802408	9802488	Low_complexity	GA-rich	Low_complexity	chr12GA-rich9802132	ProperStrand	1	1	-inf
chr1	12868827	12868917	protein_coding-noncoding	Slco5a1	utr3	ENSMUSG00000025938	ProperStrand	2	chr1	12869333	12869413	protein_coding	Slco5a1	exon	ENSMUSG00000025938	ProperStrand	3	1	-20.8207
chr9	17987796	17987829	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	13	chr4	129556706	129557092	Simple_repeat	(TTC)n	Simple_repeat	chr4(TTC)n129556943	NonProperStrand	1	1	-inf
chr2	32426568	32426648	protein_coding-noncoding	Dpm2	utr5	ENSMUSG00000026810	ProperStrand	1	chr2	32426728	32426818	protein_coding	Dpm2	exon	ENSMUSG00000026810	ProperStrand	1	1	-inf
chr6	81942951	81943456	SINE	PB1	Alu	chr6PB181942897	NonProperStrand	1	chr9	123461999	123462061	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	16	chr5	3693224	3693241	protein_coding	Ankib1	exon	ENSMUSG00000040351	NonProperStrand	6	1	-14.3546
chr4	123291341	123291416	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr2	32963383	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-3.8442
chr9	106431181	106431271	Other	RMER1A	Other	chr9RMER1A106431168	ProperStrand	1	chr9	106431071	106431151	Other	RMER1B	Other	chr9RMER1B106430884	ProperStrand	2	1	-inf
chr4	49986749	49986829	LINE	Lx7	L1	chr4Lx749986766	NonProperStrand	1	chr19	36635572	36635662	protein_coding	Hectd2	intron	ENSMUSG00000041180	NonProperStrand	2	1	-inf
chr10	46676538	46676628	LINE	Lx2B	L1	chr10Lx2B46676461	NonProperStrand	1	chr10	46676796	46676876	LINE	Lx2B	L1	chr10Lx2B46676615	NonProperStrand	1	1	-inf
chr8	25388847	25388927	DNA	URR1A	MER1_type	chr8URR1A25388839	NonProperStrand	1	chr8	25388502	25388592	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n25388517	NonProperStrand	1	1	-inf
chr11	109011748	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	179137354	179137372	protein_coding	Akt3	intron	ENSMUSG00000019699	NonProperStrand	8	1	-4.1268
chr17	39847107	39847197	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr4	151062466	151062482	protein_coding	Camta1	intron	ENSMUSG00000014592	ProperStrand	12	1	-10.0566
chr6	125307096	125307168	protein_coding	Tnfrsf1a	intron	ENSMUSG00000030341	NonProperStrand	1	chr13	44869602	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-inf
chr4	116333364	116333383	SINE	B1_Mm	Alu	chr4B1_Mm116333322	ProperStrand	1	chr4	119280051	119280085	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	4	1	-inf
chr9	22707094	22707184	LINE	L1Md_A	L1	chr9L1Md_A22701684	NonProperStrand	1	chr9	22555324	22555404	protein_coding	Bbs9	intron	ENSMUSG00000035919	ProperStrand	4	1	-inf
chr3	96979107	96979127	protein_coding	Acp6	intron	ENSMUSG00000028093	NonProperStrand	1	chr13	44869611	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-inf
chr10	23785398	23785437	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr18	44855419	44857021	protein_coding	Mcc	intron	ENSMUSG00000071856	NonProperStrand	4	1	-8.5965
chr15	34440826	34440845	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr9	54480377	54480394	protein_coding	Acsbg1	intron	ENSMUSG00000032281	ProperStrand	1	1	-inf
chr17	39846461	39846880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	2	-3.0738
chr7	101941639	101941729	LINE	L1Md_A	L1	chr7L1Md_A101938104	NonProperStrand	1	chr7	79284555	79284635	protein_coding	Mctp2	intron	ENSMUSG00000032776	ProperStrand	7	1	-inf
chr10	21480512	21480529	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	3	chr11	53539442	53539464	SINE	B4A	B4	chr11B4A53539284	NonProperStrand	1	1	-inf
chr3	79455679	79455769	protein_coding	Rxfp1	intron	ENSMUSG00000034009	NonProperStrand	1	chr17	3172813	3172893	protein_coding	Scaf8	intron	ENSMUSG00000046201	NonProperStrand	2	1	-inf
chr10	77499071	77499161	protein_coding-noncoding	Aire	utr3	ENSMUSG00000000731	NonProperStrand	1	chr10	77498655	77498735	protein_coding	Aire	intron	ENSMUSG00000000731	NonProperStrand	1	1	-inf
chr2	102829376	102829435	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	15	chr11	121776020	121776036	protein_coding	Gm12588	intron	ENSMUSG00000062632	NonProperStrand	1	1	-inf
chr16	38158024	38158085	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	chr8	4288752	4288769	protein_coding	Elavl1	utr3	ENSMUSG00000040028	NonProperStrand	2	1	-16.5011
chr17	39847222	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr17	39846098	39846178	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	NonProperStrand	45	1	-7.3659
chrX	37082910	37082963	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr8	95746113	95746148	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-6.1347
chr16	32065909	32065935	protein_coding	Pak2	intron	ENSMUSG00000022781	NonProperStrand	1	chr16	38158033	38158085	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	1	-inf
chr12	112654758	112655130	SINE	B1_Mur2	Alu	chr12B1_Mur2112654698	NonProperStrand	1	chr3	10440013	10440030	protein_coding	Snx16	utr5	ENSMUSG00000027534	ProperStrand	1	1	-inf
chr4	132309581	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr8	13876096	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	3	-5.6808
chr16	11144061	11144196	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chr9	6941032	6941049	protein_coding	Dync2h1	intron	ENSMUSG00000047193	ProperStrand	4	1	-13.1165
chr13	86426728	86426808	LINE	L1_Mur2	L1	chr13L1_Mur286426675	ProperStrand	1	chr13	86426599	86426689	LINE	Lx3C	L1	chr13Lx3C86426555	ProperStrand	1	1	-inf
chr2	90395129	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	132309497	132310723	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	13	-4.5934
chr9	123462079	123462169	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	137553181	137553261	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	13	1	-4.0251
chr18	35929272	35929362	LTR	MTA_Mm	MaLR	chr18MTA_Mm35928993	ProperStrand	1	chr18	35929477	35929557	SINE	B3A	B2	chr18B3A35929428	ProperStrand	1	1	-inf
chr15	76177786	76177822	protein_coding	Sharpin	exon	ENSMUSG00000022552	ProperStrand	7	chr16	23110837	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.6666
chr7	136974655	136974745	LINE	L2c	L2	chr7L2c136974649	ProperStrand	1	chr8	46165469	46165549	protein_coding	Mtnr1a	intron	ENSMUSG00000054764	NonProperStrand	1	1	-inf
chr17	39848677	39848813	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr9	110281285	110281347	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	2	-7.0337
chr5	146260996	146261103	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr12	78350926	78351044	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	2	-7.2643
chr17	50420137	50420172	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr5	107905188	107905305	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-7.0082
chr14	64091624	64091714	LTR	MTA_Mm-int	MaLR	chr14MTA_Mm-int64091222	ProperStrand	1	chr14	64091135	64091215	LTR	MTA_Mm	MaLR	chr14MTA_Mm64090827	ProperStrand	1	1	-inf
chr10	46699217	46699307	LINE	L1Md_F3	L1	chr10L1Md_F346697339	ProperStrand	2	chr6	104522746	104522826	protein_coding	Cntn6	intron	ENSMUSG00000030092	ProperStrand	5	1	-19.5000
chr6	72859289	72859379	LTR	RLTR20C	ERVK	chr6RLTR20C72859284	NonProperStrand	1	chr6	72859147	72859227	SINE	ID4	ID	chr6ID472859165	ProperStrand	1	1	-inf
chr2	32963283	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr5	150953041	150953057	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-3.1502
chr17	39846805	39846884	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	113985768	113985858	protein_coding	Gzmk	intron	ENSMUSG00000042385	NonProperStrand	6	1	-4.3847
chr9	64041256	64041346	protein_coding	Map2k1	intron	ENSMUSG00000004936	NonProperStrand	2	chr9	63601895	63601975	protein_coding	Smad3	intron	ENSMUSG00000032402	ProperStrand	1	1	-inf
chr11	106501242	106501327	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr5	150953040	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	2	-6.4987
chr9	17938099	17938189	SINE	B1_Mur4	Alu	chr9B1_Mur417938031	ProperStrand	1	chr9	17938223	17938303	SINE	B3	B2	chr9B317938196	ProperStrand	1	1	-inf
chr11	73254818	73254834	LTR	MMERVK10C-int	ERVK	chr11MMERVK10C-int73252549	NonProperStrand	1	chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr18	38784195	38784285	protein_coding	Arhgap26	intron	ENSMUSG00000036452	NonProperStrand	10	chr6	143794256	143794336	protein_coding	Sox5	intron	ENSMUSG00000041540	ProperStrand	5	1	-15.7398
chr11	109011748	109011770	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	141421507	141421525	protein_coding	Efhd2	intron	ENSMUSG00000040659	NonProperStrand	2	1	-7.3577
chr17	39847960	39847977	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr14	14739837	14739856	protein_coding	Gm281	intron	ENSMUSG00000084902	ProperStrand	2	1	-6.4812
chr9	30557944	30558034	LINE	Lx2	L1	chr9Lx230557207	ProperStrand	1	chr9	30558229	30558309	LINE	Lx2	L1	chr9Lx230558128	NonProperStrand	1	1	-inf
chr15	51148885	51148903	DNA	MER3	MER1_type	chr15MER351148862	NonProperStrand	1	chr17	39847445	39847476	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
mmu-miR-1912-5p	0	17	miRNA	mmu-miR-1912-5p	.	mmu-miR-1912-5p	NonProperStrand	9	chr16	23111398	23111427	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-11.1185
chr17	39848200	39848335	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr13	32634478	32634497	SINE	B4A	B4	chr13B4A32634472	NonProperStrand	1	1	-inf
chr12	87437699	87437789	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr7	109520132	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-3.1078
chr17	4082418	4082498	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	21	chr16	48547795	48547885	protein_coding	Morc1	intron	ENSMUSG00000022652	ProperStrand	3	1	-15.4041
chr15	34440791	34440889	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr8	70895803	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	2	-3.1678
chr2	158625290	158625307	protein_coding	Dhx35	intron	ENSMUSG00000027655	NonProperStrand	6	chr9	110281288	110281316	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-11.0861
chr13	19248238	19248318	LINE	L1_Mus3	L1	chr13L1_Mus319247971	ProperStrand	1	chr13	19247844	19247934	SINE	ID4_	ID	chr13ID4_19247864	ProperStrand	1	1	-inf
chr17	35283546	35283626	protein_coding-noncoding	Bag6	utr5	ENSMUSG00000024392	NonProperStrand	1	chr17	35283252	35283342	protein_coding	Bag6	utr3	ENSMUSG00000024392	NonProperStrand	1	1	-inf
chr4	15505245	15505335	LINE	L1Md_A	L1	chr4L1Md_A15505112	ProperStrand	1	chr4	15504916	15504996	LINE	L1Md_F2	L1	chr4L1Md_F215504369	ProperStrand	1	1	-inf
chr8	101513589	101513669	LINE	L1M3	L1	chr8L1M3101513572	NonProperStrand	1	chr8	101513280	101513370	LTR	RMER4B	ERVK	chr8RMER4B101513238	NonProperStrand	1	1	-inf
chr17	39846467	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	146299474	146299492	protein_coding	Ralgapa2	intron	ENSMUSG00000037110	NonProperStrand	4	1	-5.2608
chr9	44151540	44151630	protein_coding	Hmbs	intron	ENSMUSG00000032126	NonProperStrand	1	chr2	175154177	175154257	protein_coding	Gm4631	intron	ENSMUSG00000078899	ProperStrand	3	1	-inf
chr11	6620318	6620402	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr5	114851974	114852030	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-4.5276
chrX	87238375	87238409	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr9	59671962	59672012	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	13	1	-9.1404
chr12	52665486	52665566	LINE	L1_Mur3	L1	chr12L1_Mur352665481	NonProperStrand	1	chr12	52665353	52665443	SINE	B1_Mus1	Alu	chr12B1_Mus152665320	ProperStrand	1	1	-inf
chr6	19249583	19249663	LINE	L1_Mur2	L1	chr6L1_Mur219249375	ProperStrand	1	chr6	19249202	19249292	LINE	Lx2	L1	chr6Lx219248759	NonProperStrand	1	1	-inf
chr13	13748061	13748141	protein_coding	Lyst	intron	ENSMUSG00000019726	NonProperStrand	1	chr2	41397087	41397177	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-inf
chr17	39846590	39846650	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	95133285	95133570	protein_coding	Setdb1	intron	ENSMUSG00000015697	NonProperStrand	1	1	-inf
chr4	132352442	132352833	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr2	158359845	158359919	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	2	-4.7312
chrX	37082914	37083010	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr16	23110825	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	3	-3.3350
chr5	146261173	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr4	43492787	43492921	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	1	-3.4876
chr14	75847947	75848029	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr13	97190542	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	2	-3.0051
chr16	23110755	23110820	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	162906619	162906635	protein_coding	Mybl2	intron	ENSMUSG00000017861	NonProperStrand	3	1	-7.8954
chr8	3803256	3803341	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	chr2	130276311	130276364	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	1	-5.6118
chr6	3201470	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	mmu-miR-6240	2	20	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-5.1892
chr2	65764442	65764466	protein_coding	Csrnp3	intron	ENSMUSG00000044647	ProperStrand	2	chr8	13876096	13876155	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-13.7914
chr13	119705169	119705363	LTR	RMER19C	ERVK	chr13RMER19C119705263	ProperStrand	1	chr17	39846353	39846376	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chrX	133366286	133366307	protein_coding	Plp1	intron	ENSMUSG00000031425	ProperStrand	4	chr2	48949747	48949770	protein_coding	Mbd5	intron	ENSMUSG00000036792	ProperStrand	2	1	-19.9239
chr1	48721966	48721983	LINE	Lx3_Mus	L1	chr1Lx3_Mus48721718	ProperStrand	1	chr7	107425159	107425249	protein_coding	Pgm2l1	intron	ENSMUSG00000030729	NonProperStrand	1	1	-inf
chr4	99904793	99904809	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	16	chr19	8888612	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-6.1993
chr3	6423080	6423170	LINE	L1Md_F2	L1	chr3L1Md_F26423059	NonProperStrand	1	chr3	6422893	6422973	LINE	L1Md_T	L1	chr3L1Md_T6422731	NonProperStrand	1	1	-inf
chr2	79329730	79329746	LTR	MTA_Mm	MaLR	chr2MTA_Mm79329493	ProperStrand	1	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-inf
chr4	132309967	132310067	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr14	45316036	45316079	protein_coding	Gm8257	intron	ENSMUSG00000079265	ProperStrand	3	1	-8.6506
chr9	123461974	123462005	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr12	87107392	87107410	protein_coding	Mfsd7c	intron	ENSMUSG00000034258	NonProperStrand	1	1	-inf
mmu-miR-1949	0	23	miRNA	mmu-miR-1949	.	mmu-miR-1949	ProperStrand	3	chr16	23110801	23110885	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-7.8954
chrX	37082913	37082963	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr4	132352442	132352515	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	1	-3.3275
chr16	12404299	12404379	LINE	L1Md_F2	L1	chr16L1Md_F212403941	NonProperStrand	1	chr16	12404550	12404640	LINE	Lx6	L1	chr16Lx612404420	NonProperStrand	1	1	-inf
chr1	164677946	164678026	LINE	Lx7	L1	chr1Lx7164677936	ProperStrand	1	chr1	164678082	164678172	LTR	MTC	MaLR	chr1MTC164678055	NonProperStrand	1	1	-inf
chr9	20911436	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	11	chr17	12919664	12919718	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	1	-10.5071
chr11	109011791	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	mmu-miR-199a-3p	0	22	miRNA	mmu-miR-199a-3p	.	mmu-miR-199a-3p	ProperStrand	1	1	-inf
chr5	137392450	137392540	SINE	B3	B2	chr5B3137392473	NonProperStrand	1	chr5	137392870	137392950	SINE	B4	B4	chr5B4137392868	NonProperStrand	1	1	-inf
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	33726448	33726464	protein_coding	Heg1	exon	ENSMUSG00000075254	NonProperStrand	6	1	-4.7173
chr17	39847477	39847503	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	186721439	186721455	protein_coding	Mark1	utr3	ENSMUSG00000026620	ProperStrand	1	1	-inf
chr5	70555335	70555415	LINE	L1Md_F3	L1	chr5L1Md_F370555324	ProperStrand	1	chr5	70555078	70555168	LINE	Lx2	L1	chr5Lx270553988	ProperStrand	1	1	-inf
chr15	83858398	83858414	protein_coding	Efcab6	intron	ENSMUSG00000022441	NonProperStrand	2	chr16	57391570	57391670	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-15.8421
chr11	24109095	24109185	lincRNA	Gm12066	intron	ENSMUSG00000085579	NonProperStrand	1	chr11	9413611	9413691	protein_coding	Abca13	intron	ENSMUSG00000004668	ProperStrand	8	1	-inf
chr17	39847689	39847743	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr4	40953036	40958946	protein_coding	Nfx1	utr3	ENSMUSG00000028423	NonProperStrand	2	1	-13.4248
chr17	39847452	39847469	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	98935329	98935361	protein_coding	Foxp1	intron	ENSMUSG00000030067	ProperStrand	6	1	-3.8783
chr16	23110380	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr3	146464781	146464798	protein_coding	Prkacb	intron	ENSMUSG00000005034	NonProperStrand	3	1	-7.8954
chr17	39846097	39846196	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	NonProperStrand	45	chr15	34056189	34056230	protein_coding	Mtdh	intron	ENSMUSG00000022255	ProperStrand	2	2	-inf
chr17	39846822	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	109693213	109693229	protein_coding	Cyb5b	intron	ENSMUSG00000031924	ProperStrand	2	1	-7.0123
chr3	80320554	80320634	LINE	L1_Mur1	L1	chr3L1_Mur180320505	ProperStrand	1	chr3	80320288	80320378	LINE	Lx5	L1	chr3Lx580320008	ProperStrand	1	1	-inf
chr17	39847738	39847797	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chrX	103672690	103672709	protein_coding	Fndc3c1	intron	ENSMUSG00000033737	NonProperStrand	5	1	-4.2576
chr2	32963314	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr2	5379274	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	5	-3.1446
chr11	109011723	109011862	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	23110825	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	57	-17.6345
chr19	32952931	32953021	LTR	RLTR10-int	ERVK	chr19RLTR10-int32952545	ProperStrand	1	chr19	38035724	38035804	protein_coding	Myof	intron	ENSMUSG00000048612	ProperStrand	2	1	-inf
chr6	28833540	28833558	protein_coding	Snd1	intron	ENSMUSG00000001424	NonProperStrand	9	chr7	109520119	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-7.2058
chr4	7431617	7431697	LINE	L1Md_F2	L1	chr4L1Md_F27430749	ProperStrand	1	chr4	6863577	6863667	protein_coding	Tox	intron	ENSMUSG00000041272	NonProperStrand	5	1	-inf
chr17	39847194	39847222	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr6	53360036	53360054	protein_coding	9430076C15Rik	intron	ENSMUSG00000090982	ProperStrand	3	1	-7.5717
chr10	76762294	76762310	protein_coding	Adarb1	intron	ENSMUSG00000020262	NonProperStrand	4	chr2	122123773	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-8.4601
chr2	130276280	130276360	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr8	126944846	126944956	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	3	-6.3582
chr6	95112868	95112958	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n95112865	NonProperStrand	1	chr6	95113399	95113479	Simple_repeat	(CA)n	Simple_repeat	chr6(CA)n95113404	NonProperStrand	1	1	-inf
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chrX	146050679	146050698	protein_coding	Gm10439	intron	ENSMUSG00000072923	ProperStrand	1	1	-inf
chr9	123461959	123461977	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr10	79978451	79978563	protein_coding	Onecut3	utr3	ENSMUSG00000045518	NonProperStrand	1	1	-inf
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	138036563	138036582	SINE	B4A	B4	chr4B4A138036312	ProperStrand	1	1	-inf
chr11	69667930	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr8	70895758	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	3	-3.1930
chr10	23785399	23785426	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr12	85095610	85106285	protein_coding	Papln	intron	ENSMUSG00000021223	NonProperStrand	2	1	-10.3808
chr11	96708131	96708221	LTR	RMER10B	ERVL	chr11RMER10B96708046	NonProperStrand	1	chr11	96708330	96708410	SINE	B3	B2	chr11B396708348	NonProperStrand	1	1	-inf
chr5	76770557	76770637	lincRNA	4930432L08Rik	exon	ENSMUSG00000087037	ProperStrand	1	chr5	76770887	76770977	protein_coding	Nmu	intron	ENSMUSG00000029236	NonProperStrand	1	1	-inf
chr7	120635801	120635881	DNA	MER20	MER1_type	chr7MER20120635808	ProperStrand	1	chr7	120636250	120636340	LTR	MLT1A1	MaLR	chr7MLT1A1120636239	ProperStrand	1	1	-inf
chr5	76762440	76762530	lincRNA	4930432L08Rik	intron	ENSMUSG00000087037	NonProperStrand	1	chr5	76762782	76762862	protein_coding	Nmu	intron	ENSMUSG00000029236	ProperStrand	1	1	-inf
chr19	13405304	13405384	LINE	L1Md_F3	L1	chr19L1Md_F313405063	NonProperStrand	1	chr10	122565789	122565879	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	1	-inf
chr4	107179250	107179330	protein_coding	Glis1	intron	ENSMUSG00000034762	ProperStrand	4	chr15	58173695	58173785	protein_coding	Anxa13	intron	ENSMUSG00000055114	ProperStrand	1	1	-inf
chr17	39846818	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	128066186	128066295	SINE	B2_Mm1a	B2	chr10B2_Mm1a128066144	ProperStrand	1	1	-inf
chr8	12757419	12757437	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	chr16	23110837	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	3	-6.3863
chr3	123507994	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr13	49684298	49684376	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	2	-5.7082
chr7	103550763	103550864	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	16	chr14	33967641	33967766	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	2	-17.8277
chr9	123462021	123462046	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr10	127552283	127552784	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	10	1	-4.5433
chr11	105221216	105221306	SINE	ID_B1	B4	chr11ID_B1105221214	NonProperStrand	1	chr11	60721581	60721661	protein_coding	Gm16515	intron	ENSMUSG00000018931	ProperStrand	1	1	-inf
chr12	51899163	51899182	LINE	L1_Mus2	L1	chr12L1_Mus251897621	ProperStrand	3	chr3	123507994	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-8.8529
chr6	131380389	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr1	36531405	36531423	protein_coding	Cnnm4	intron	ENSMUSG00000037408	NonProperStrand	3	1	-14.9682
chr5	121205007	121205118	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr16	23110833	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	9	-4.5820
chr11	105935978	105936068	LINE	L1Md_F2	L1	chr11L1Md_F2105935609	NonProperStrand	1	chr11	105936218	105936298	LTR	MTA_Mm	MaLR	chr11MTA_Mm105936191	NonProperStrand	1	1	-inf
chr5	5508181	5508224	protein_coding	Cldn12	exon	ENSMUSG00000046798	ProperStrand	2	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-13.5769
chr11	78219948	78219990	protein_coding	Slc13a2	intron	ENSMUSG00000001095	ProperStrand	1	chr4	132309940	132310045	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr2	81829695	81829775	LTR	MMVL30-int	ERV1	chr2MMVL30-int81829680	NonProperStrand	1	chr2	81829382	81829472	LTR	RLTR6_Mm	ERV1	chr2RLTR6_Mm81829004	NonProperStrand	1	1	-inf
chr6	30611268	30611358	protein_coding-noncoding	Tsga14	utr3	ENSMUSG00000029790	ProperStrand	1	chr6	30611319	30611399	protein_coding	Tsga14	intron	ENSMUSG00000029790	ProperStrand	2	1	-inf
chr12	50195609	50195699	LINE	Lx9	L1	chr12Lx950195623	NonProperStrand	1	chr12	50195451	50195531	SINE	B3	B2	chr12B350195364	ProperStrand	1	1	-inf
chr11	62315759	62315775	protein_coding	Pigl	intron	ENSMUSG00000014245	ProperStrand	1	chr11	94162148	94162168	protein_coding	Luc7l3	intron	ENSMUSG00000020863	ProperStrand	3	1	-inf
chr17	33823211	33823301	protein_coding	Hnrnpm	utr5	ENSMUSG00000059208	ProperStrand	1	chr17	33823298	33824346	protein_coding	March2	utr3	ENSMUSG00000079557	ProperStrand	6	1	-inf
chr11	98109560	98110949	protein_coding	Cdk12	intron	ENSMUSG00000003119	ProperStrand	1	chr14	10983425	10983443	protein_coding	Fhit	intron	ENSMUSG00000060579	NonProperStrand	8	1	-inf
chr5	146261170	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr4	117155828	117155847	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	13	1	-5.6194
chr4	116278353	116278443	protein_coding-noncoding	Nasp	utr3	ENSMUSG00000028693	ProperStrand	1	chr12	67665450	67665530	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr17	39847445	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	114851973	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	22	-4.3952
chr2	90395139	90395189	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	130276244	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	9	-6.9950
chrX	101097996	101098013	LTR	MTA_Mm-int	MaLR	chrXMTA_Mm-int101097254	NonProperStrand	1	chr17	24719675	24719775	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-inf
chr11	107406305	107406395	processed_transcript	A830035A12Rik	.	ENSMUSG00000059706	ProperStrand	2	chr4	43532082	43532250	protein_coding	Tpm2	intron	ENSMUSG00000028464	ProperStrand	3	1	-20.8207
chr8	87962411	87962491	LINE	Lx7	L1	chr8Lx787962254	ProperStrand	1	chr8	87962538	87962628	SINE	B2_Mm2	B2	chr8B2_Mm287962527	ProperStrand	1	1	-inf
chr4	132352925	132352956	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr8	67368374	67368392	protein_coding	Klhl2	intron	ENSMUSG00000031605	NonProperStrand	2	1	-12.1295
chrX	68427296	68427376	LTR	IAPEY2_LTR	ERVK	chrXIAPEY2_LTR68427307	ProperStrand	1	chr5	44966833	44966923	protein_coding	Ldb2	intron	ENSMUSG00000039706	ProperStrand	6	1	-inf
chr17	35162616	35162697	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr15	34440841	34440864	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-3.6092
chr4	35140409	35140478	protein_coding	3110043O21Rik	utr3	ENSMUSG00000028300	ProperStrand	1	chr7	28352225	28352395	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-inf
chr3	123507936	123508068	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr2	90395129	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	19	-11.9964
chr14	98626458	98626476	LINE	L1Md_T	L1	chr14L1Md_T98625862	NonProperStrand	1	chr13	97190548	97190620	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr2	14436841	14436921	lincRNA	Gm13266	intron	ENSMUSG00000084901	ProperStrand	1	chr2	14562313	14562403	protein_coding	Cacnb2	intron	ENSMUSG00000057914	NonProperStrand	2	1	-inf
chr12	18244185	18244265	LTR	ETnERV2-int	ERVK	chr12ETnERV2-int18243423	NonProperStrand	1	chr8	97442227	97442317	SINE	MIR	MIR	chr8MIR97442216	ProperStrand	1	1	-inf
chr1	45336665	45337244	LINE	Lx3A	L1	chr1Lx3A45336590	NonProperStrand	2	chr16	23110396	23110451	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-8.9865
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr9	108487504	108487525	protein_coding	P4htm	intron	ENSMUSG00000006675	NonProperStrand	7	1	-10.6050
chr4	110274898	110274988	protein_coding	Agbl4	intron	ENSMUSG00000061298	NonProperStrand	7	chr4	110282524	110282604	protein_coding	Agbl4	intron	ENSMUSG00000061298	ProperStrand	10	1	-14.9988
chr8	119753542	119753632	LINE	L1_Mus1	L1	chr8L1_Mus1119752723	ProperStrand	1	chr8	119753683	119753763	SINE	B1_Mus2	Alu	chr8B1_Mus2119753634	ProperStrand	1	1	-inf
chr17	39848507	39848587	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr17	39843846	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	1	-3.2583
chr17	24720815	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr6	97162844	97162924	protein_coding	Arl6ip5	intron	ENSMUSG00000035199	NonProperStrand	7	1	-7.9972
chr19	54570636	54570657	LTR	MLT2B3	ERVL	chr19MLT2B354570625	ProperStrand	1	chr9	123461913	123461996	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	1	-inf
chr16	78497794	78497884	LINE	L1Md_A	L1	chr16L1Md_A78493193	ProperStrand	1	chr16	78564606	78564686	protein_coding	D16Ertd472e	intron	ENSMUSG00000022864	ProperStrand	1	1	-inf
chr11	22564220	22564310	LTR	MLT1B	MaLR	chr11MLT1B22564193	NonProperStrand	1	chr11	22563884	22563964	LTR	RMER17C	ERVK	chr11RMER17C22563712	NonProperStrand	1	1	-inf
chr7	141448812	141448892	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr5	121205027	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-3.8204
chr4	62602565	62602645	SINE	B4	B4	chr4B462602572	NonProperStrand	1	chr4	62602845	62602935	SINE	B4	B4	chr4B462602829	NonProperStrand	1	1	-inf
chr7	109520119	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr10	39959641	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	1	-6.1536
chr17	39846583	39846675	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	122635681	122635700	Low_complexity	AT_rich	Low_complexity	chr3AT_rich122635678	ProperStrand	1	1	-inf
chr4	151497626	151497716	protein_coding-noncoding	Espn	utr3	ENSMUSG00000028943	ProperStrand	1	chr4	151497826	151497906	protein_coding	Espn	exon	ENSMUSG00000028943	ProperStrand	2	1	-inf
chr17	4082093	4082183	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	chr3	58852064	58852144	protein_coding	Gm10071	intron	ENSMUSG00000059776	ProperStrand	1	1	-inf
chr8	116594060	116594140	LINE	Lx8	L1	chr8Lx8116594005	ProperStrand	1	chr8	116594305	116594395	LTR	MTEa	MaLR	chr8MTEa116594271	NonProperStrand	1	1	-inf
chr14	112495913	112495934	LINE	L1Md_T	L1	chr14L1Md_T112495662	ProperStrand	4	chr17	39848201	39848291	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	1	-13.7288
chr12	11091995	11092011	LINE	Lx8	L1	chr12Lx811091971	ProperStrand	3	chr19	44303017	44303068	protein_coding	Scd3	intron	ENSMUSG00000025202	ProperStrand	4	1	-18.9366
chr11	109011791	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	95254161	95254178	protein_coding	Arnt	intron	ENSMUSG00000015522	ProperStrand	3	1	-6.2761
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	56035807	56035858	protein_coding	Rg9mtd1	intron	ENSMUSG00000044763	ProperStrand	9	2	-6.7207
chr7	47188554	47188644	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	7	chr7	47188375	47188455	SINE	B3A	B2	chr7B3A47188341	ProperStrand	2	1	-18.7768
chr14	75972539	75972620	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr8	4324891	4324908	protein_coding	Elavl1	utr5	ENSMUSG00000040028	NonProperStrand	2	1	-17.3407
chr3	95470953	95471001	SINE	B1_Mur2	Alu	chr3B1_Mur295470910	NonProperStrand	1	chr12	80796810	80796860	protein_coding	Rad51l1	intron	ENSMUSG00000059060	ProperStrand	6	1	-inf
chr17	92040920	92040937	LINE	L1Md_T	L1	chr17L1Md_T92040519	NonProperStrand	1	chr17	39846759	39846777	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr1	104923375	104923465	LINE	L1_Mus1	L1	chr1L1_Mus1104923396	ProperStrand	1	chr1	104924056	104924136	LINE	L1_Mus1	L1	chr1L1_Mus1104923532	ProperStrand	1	1	-inf
chr2	168643257	168643347	SINE	B3	B2	chr2B3168643221	NonProperStrand	1	chr2	168643508	168643588	Simple_repeat	(GGAA)n	Simple_repeat	chr2(GGAA)n168643515	NonProperStrand	1	1	-inf
chr17	24720779	24720849	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr6	63215712	63215734	protein_coding	Grid2	intron	ENSMUSG00000071424	NonProperStrand	11	1	-7.0451
chr6	134286564	134286654	LINE	L1Md_F2	L1	chr6L1Md_F2134286221	NonProperStrand	1	chr6	134370246	134370326	protein_coding	Bcl2l14	intron	ENSMUSG00000030200	ProperStrand	2	1	-inf
chr7	28351593	28351609	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	chr2	158356477	158356510	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-5.2603
chr4	132352504	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	1	-4.7997
chr17	39846326	39847165	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	39847338	39848097	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	167	-24.6842
chr17	39848182	39848199	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr5	110692047	110692181	protein_coding	Pgam5	intron	ENSMUSG00000029500	ProperStrand	37	1	-4.3623
chrX	74272499	74272570	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr13	112578206	112578296	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-3.2523
chr16	23111631	23111702	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr13	42156490	42156522	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	13	1	-4.7116
chr17	8639644	8639724	LTR	ORR1D2	MaLR	chr17ORR1D28639637	ProperStrand	1	chr17	8639408	8639498	SINE	B2_Mm1a	B2	chr17B2_Mm1a8639336	ProperStrand	1	1	-inf
chrX	4899374	4899402	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr13	97190588	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-4.4717
chr4	132352442	132352524	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr5	115489528	115489602	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	6	1	-8.8205
chr14	75847947	75848016	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr2	84667266	84667282	protein_coding	Timm10	utr5	ENSMUSG00000027076	NonProperStrand	2	1	-13.0444
chr2	165555483	165555563	protein_coding	Eya2	intron	ENSMUSG00000017897	NonProperStrand	1	chr9	67219310	67219400	protein_coding	Tln2	intron	ENSMUSG00000052698	NonProperStrand	6	1	-inf
chr1	45339876	45339919	DNA	Zaphod	Tip100	chr1Zaphod45339550	NonProperStrand	1	chr14	102193176	102193194	protein_coding	Lmo7	intron	ENSMUSG00000033060	NonProperStrand	1	1	-inf
chr11	109011803	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr15	34440847	34440874	protein_coding	Pop1	intron	ENSMUSG00000022325	ProperStrand	2	1	-17.4836
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	52818148	52818166	protein_coding	Cog6	intron	ENSMUSG00000027742	ProperStrand	1	1	-inf
chr6	42866242	42866260	LINE	Lx2	L1	chr6Lx242865969	ProperStrand	1	chr17	39846793	39846880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr6	131142710	131142790	LINE	L1_Mus1	L1	chr6L1_Mus1131142684	ProperStrand	1	chr6	131142870	131142960	LINE	Lx2	L1	chr6Lx2131142810	ProperStrand	1	1	-inf
chrX	87238364	87238400	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr7	110046419	110046475	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	1	-5.3047
chr13	88429857	88429877	LINE	Lx	L1	chr13Lx88429198	ProperStrand	2	chr17	39846759	39846775	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-7.0123
chr6	113973670	113973760	lincRNA	Gm15083	intron	ENSMUSG00000087083	ProperStrand	1	chr19	42192445	42192525	protein_coding	Pi4k2a	intron	ENSMUSG00000025178	ProperStrand	2	1	-inf
chr14	21796796	21796876	protein_coding	Vcl	intron	ENSMUSG00000021823	ProperStrand	2	chr13	105205573	105205663	protein_coding	Adamts6	intron	ENSMUSG00000046169	ProperStrand	2	1	-21.5566
chr3	56183307	56183325	LINE	L1Md_A	L1	chr3L1Md_A56183116	ProperStrand	5	chr3	123507977	123508020	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-7.6581
chr17	26113361	26113427	protein_coding	Solh	intron	ENSMUSG00000037326	NonProperStrand	1	chr19	8888600	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-inf
chr4	132352888	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr9	15313800	15315269	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	3	-4.6012
chr14	75847904	75847945	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr16	23110766	23110794	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-3.8776
chr12	26910289	26910379	SINE	B3	B2	chr12B326910221	NonProperStrand	1	chr3	40702668	40702748	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	ProperStrand	3	1	-inf
chr10	72036059	72036149	LINE	Lx9	L1	chr10Lx972035928	ProperStrand	1	chr10	72036226	72036306	LINE	Lx9	L1	chr10Lx972036147	ProperStrand	1	1	-inf
chr11	95864818	95864908	protein_coding	Igf2bp1	intron	ENSMUSG00000013415	NonProperStrand	1	chr15	98979079	98979159	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	4	1	-inf
chr10	23785753	23785818	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	78183058	78183123	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	9	1	-6.8232
chr19	24942287	24942377	LINE	L1M2	L1	chr19L1M224942089	NonProperStrand	19	chr17	39847176	39847221	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-3.6681
chr9	17987813	17987840	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	13	chr11	93955552	93955568	protein_coding	Spag9	intron	ENSMUSG00000020859	ProperStrand	2	1	-17.4836
chr8	66036933	66037013	LINE	L1_Mur2	L1	chr8L1_Mur266036842	NonProperStrand	1	chr8	66037109	66037199	SINE	B3A	B2	chr8B3A66037073	ProperStrand	1	1	-inf
chr5	146261267	146261317	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr4	132352934	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-3.5620
chr12	80436472	80436488	protein_coding	Rad51l1	intron	ENSMUSG00000059060	NonProperStrand	10	chr16	23110893	23110932	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.9306
chr11	102399539	102399629	protein_coding-noncoding	Gpatch8	utr3	ENSMUSG00000034621	ProperStrand	1	chr11	102399713	102399793	protein_coding	Gpatch8	intron	ENSMUSG00000034621	ProperStrand	5	1	-inf
chr16	3884593	3884673	protein_coding	Nat15	intron	ENSMUSG00000005982	NonProperStrand	1	chr16	3884242	3884332	protein_coding	Zfp597	intron	ENSMUSG00000039789	ProperStrand	2	1	-inf
chr10	86837962	86838052	LINE	L1Md_T	L1	chr10L1Md_T86837953	NonProperStrand	2	chr10	86837808	86837888	LINE	Lx	L1	chr10Lx86837624	ProperStrand	2	2	-inf
chr8	23948615	23948695	LTR	MTE-int	MaLR	chr8MTE-int23948354	NonProperStrand	1	chr8	23970424	23970514	protein_coding	Myst3	intron	ENSMUSG00000031540	NonProperStrand	1	1	-inf
chr11	97781687	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr5	33162644	33162660	protein_coding	RP23-118L1.1	intron	ENSMUSG00000093574	ProperStrand	1	1	-inf
chr2	174460277	174460367	SINE	B1F	Alu	chr2B1F174460302	NonProperStrand	1	chr2	174460133	174460213	SINE	B4	B4	chr2B4174460135	ProperStrand	1	1	-inf
chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	chr2	5379281	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-5.5219
chr11	109011827	109011863	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	42786402	42786426	lincRNA	4932412D23Rik	intron	ENSMUSG00000075070	NonProperStrand	3	1	-6.2761
chrX	139038359	139038449	LINE	Lx7	L1	chrXLx7139038234	ProperStrand	1	chrX	139038657	139038737	SINE	B2_Mm2	B2	chrXB2_Mm2139038619	ProperStrand	1	1	-inf
chr6	34138961	34139051	LTR	ORR1D1-int	MaLR	chr6ORR1D1-int34138662	ProperStrand	1	chr6	34139464	34139544	LTR	ORR1D1	MaLR	chr6ORR1D134139322	ProperStrand	1	1	-inf
chr5	72580938	72580956	LTR	ORR1B2-int	MaLR	chr5ORR1B2-int72580706	ProperStrand	1	chr4	132310239	132310271	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr17	39846061	39846095	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	chr17	10471057	10471133	protein_coding	Qk	intron	ENSMUSG00000062078	ProperStrand	3	1	-11.2278
chr3	7463039	7463130	LINE	L1_Mus3	L1	chr3L1_Mus37463021	ProperStrand	1	chr3	7462827	7462907	LTR	RMER17C	ERVK	chr3RMER17C7462528	NonProperStrand	2	1	-inf
chr2	30481398	30481478	LTR	MTE2a	MaLR	chr2MTE2a30481133	ProperStrand	1	chr2	30481698	30481788	LTR	ORR1D2-int	MaLR	chr2ORR1D2-int30481659	NonProperStrand	1	1	-inf
chr1	132504428	132504445	protein_coding	Zp3r	intron	ENSMUSG00000042554	ProperStrand	13	chr7	99349102	99349219	protein_coding	Dlg2	intron	ENSMUSG00000052572	NonProperStrand	32	1	-11.2893
chr11	109011794	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	22852065	22852102	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	12	1	-3.3361
mmu-miR-6240	1	20	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr8	95746105	95746175	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-6.3099
chr17	4082599	4082699	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	21	chr17	39847183	39847232	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	1	-8.9038
chr5	146261006	146261033	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	11933601	11934206	protein_coding	Grb10	intron	ENSMUSG00000020176	ProperStrand	2	1	-9.9250
chr1	103664900	103664980	LINE	L1VL4	L1	chr1L1VL4103664479	ProperStrand	1	chr1	103665070	103665160	LINE	L1_Mus2	L1	chr1L1_Mus2103665000	NonProperStrand	1	1	-inf
chr12	55358069	55358159	DNA	URR1B	MER1_type	chr12URR1B55358051	NonProperStrand	1	chr12	55357793	55357873	LTR	ORR1E	MaLR	chr12ORR1E55357696	ProperStrand	1	1	-inf
chr9	109497063	109497153	LTR	RMER16-int	ERVK	chr9RMER16-int109495458	ProperStrand	1	chr9	109497384	109497464	LTR	RMER16-int	ERVK	chr9RMER16-int109497265	ProperStrand	1	1	-inf
chr9	21109323	21109376	protein_coding	Ap1m2	intron	ENSMUSG00000003309	ProperStrand	1	chr16	34549627	34549646	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	9	1	-inf
chr17	39847844	39847902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr14	24465286	24466938	protein_coding	Kcnma1	intron	ENSMUSG00000063142	ProperStrand	7	1	-3.5679
chr19	10586940	10587030	protein_coding	Sdhaf2	intron	ENSMUSG00000024668	NonProperStrand	1	chr14	76108067	76108147	protein_coding	Cog3	intron	ENSMUSG00000034893	ProperStrand	4	1	-inf
chr1	132207239	132207319	LINE	Lx9	L1	chr1Lx9132207226	NonProperStrand	1	chr1	132207519	132207609	LINE	Lx9	L1	chr1Lx9132207382	NonProperStrand	1	1	-inf
chr11	109011817	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	20252919	20252936	pseudogene	Vmn2r-ps126	.	ENSMUSG00000093401	ProperStrand	2	1	-7.3577
chr1	102454009	102454089	LINE	Lx6	L1	chr1Lx6102453957	ProperStrand	1	chr1	102453801	102453891	LTR	RMER13B	ERVK	chr1RMER13B102453645	ProperStrand	1	1	-inf
chr1	90958880	90958960	LINE	L1MA7	L1	chr1L1MA790958903	ProperStrand	1	chr1	90958372	90958462	LTR	RMER19C	ERVK	chr1RMER19C90958052	NonProperStrand	1	1	-inf
chr13	77810978	77811058	LTR	IAPEz-int	ERVK	chr13IAPEz-int77810299	NonProperStrand	1	chr13	77811222	77811312	LTR	IAPEz-int	ERVK	chr13IAPEz-int77811146	NonProperStrand	1	1	-inf
chr7	111232481	111232571	processed_transcript	4930516K23Rik	.	ENSMUSG00000090219	ProperStrand	3	chr7	111232594	111232674	protein_coding	Olfr645	utr3	ENSMUSG00000051340	ProperStrand	1	1	-inf
chr9	106430334	106431110	Other	RMER1B	Other	chr9RMER1B106430884	ProperStrand	2	chr9	6963586	6963676	protein_coding	Dync2h1	intron	ENSMUSG00000047193	ProperStrand	4	1	-19.9190
chr10	68097996	68098049	LTR	RLTR20D	ERVK	chr10RLTR20D68097661	ProperStrand	1	chr17	39846353	39846467	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr10	43752764	43752854	LINE	L1MB8	L1	chr10L1MB843752732	ProperStrand	1	chr10	43752634	43752714	LTR	MLT1A1	MaLR	chr10MLT1A143752343	ProperStrand	1	1	-inf
chr13	44869601	44869665	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr7	30956719	30956736	protein_coding	Gm5113	intron	ENSMUSG00000066647	ProperStrand	1	1	-inf
chr1	104098662	104098742	LINE	Lx5	L1	chr1Lx5104098588	ProperStrand	1	chr1	104098924	104099014	SINE	B4	B4	chr1B4104098840	NonProperStrand	1	1	-inf
chr11	80994994	80995084	protein_coding	Accn1	intron	ENSMUSG00000020704	ProperStrand	16	chr12	67667904	67667984	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-10.9237
chrX	38995630	38995720	protein_coding	Gria3	intron	ENSMUSG00000001986	NonProperStrand	1	chr7	103550485	103550565	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	17	1	-inf
chr2	130276280	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr7	127527966	127528000	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-5.9305
chr6	56778396	56778476	LINE	Lx3C	L1	chr6Lx3C56777166	NonProperStrand	1	chr10	95507548	95507638	protein_coding	Eea1	utr3	ENSMUSG00000036499	NonProperStrand	5	1	-inf
chr3	37912922	37913012	SINE	B3	B2	chr3B337912864	NonProperStrand	1	chr3	30514410	30514490	protein_coding	Mynn	intron	ENSMUSG00000037730	NonProperStrand	2	1	-inf
chr1	165452465	165452555	LINE	L1M4	L1	chr1L1M4165452323	ProperStrand	1	chr1	165452994	165453074	LINE	L1ME1	L1	chr1L1ME1165452976	ProperStrand	1	1	-inf
chr5	36795306	36795386	lincRNA	2210406O10Rik	intron	ENSMUSG00000039563	ProperStrand	3	chr6	112686576	112686666	protein_coding	Srgap3	intron	ENSMUSG00000030257	ProperStrand	6	3	-inf
chr17	39847445	39847471	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	19445843	19445862	protein_coding	4921504E06Rik	intron	ENSMUSG00000026734	ProperStrand	2	1	-6.4812
chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	chr5	107907344	107907476	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-7.8775
chr7	110046444	110046477	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr4	123291355	123291433	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-6.1306
chr8	70895758	70895877	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr7	141984949	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-5.6265
chr19	47265380	47265480	protein_coding	Neurl1a	intron	ENSMUSG00000006435	NonProperStrand	4	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-8.4601
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chrX	56585767	56585783	protein_coding	Fgf13	intron	ENSMUSG00000031137	NonProperStrand	4	1	-13.6127
chr11	63914856	63914936	LINE	L1MD3	L1	chr11L1MD363914840	ProperStrand	1	chr11	63914418	63914508	Low_complexity	GA-rich	Low_complexity	chr11GA-rich63914430	NonProperStrand	1	1	-inf
chrX	74344546	74344565	LINE	L1Md_F2	L1	chrXL1Md_F274343867	ProperStrand	4	chr16	35981613	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-11.6138
chr8	3803284	3803332	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	chr19	8888597	8888676	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-5.1564
chr15	66718902	66718982	LTR	MTE2b	MaLR	chr15MTE2b66718716	ProperStrand	1	chr15	66719142	66719232	SINE	B4	B4	chr15B466719090	NonProperStrand	1	1	-inf
chr5	146261280	146261299	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr16	23110761	23110797	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-3.9431
chr16	23110408	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr16	35981616	35981647	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	4	-5.3399
chr1	114836394	114836474	LINE	L1Md_T	L1	chr1L1Md_T114836238	ProperStrand	1	chr1	114836158	114836248	LINE	Lx9	L1	chr1Lx9114836164	ProperStrand	1	1	-inf
chr10	122565761	122565851	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr7	57466834	57466914	protein_coding	Nell1	intron	ENSMUSG00000055409	NonProperStrand	5	1	-14.0143
chr5	108426546	108426799	Simple_repeat	(TTTC)n	Simple_repeat	chr5(TTTC)n108426528	ProperStrand	1	chr2	122123774	122123790	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr16	23108602	23111859	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr16	23108793	23111648	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	11	-15.7780
chr19	44061469	44061559	LINE	L1_Rod	L1	chr19L1_Rod44061468	NonProperStrand	1	chr19	44061714	44061794	SINE	B3	B2	chr19B344061734	NonProperStrand	1	1	-inf
chr2	90395139	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr19	8888537	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	7	-3.3058
chr1	37361041	37361131	protein_coding	Inpp4a	intron	ENSMUSG00000026113	NonProperStrand	2	chr1	88201702	88201782	protein_coding	B3gnt7	exon	ENSMUSG00000079445	ProperStrand	1	1	-inf
chr13	49684298	49684415	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	chr9	15313802	15313932	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	3	-10.0086
chr8	70895758	70895856	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr16	23111394	23111421	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-4.1621
chr6	91256236	91256359	DNA	RCHARR1	MER1_type	chr6RCHARR191256126	NonProperStrand	2	chr15	79707710	79707748	SINE	B2_Mm2	B2	chr15B2_Mm279707586	NonProperStrand	1	1	-inf
chr15	34440791	34440910	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr4	56897626	56897757	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	3	-12.5581
chr16	23110396	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr19	4197081	4197100	protein_coding	Rad9	intron	ENSMUSG00000024824	NonProperStrand	1	1	-inf
chr17	39846458	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	95330598	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	8	-5.4174
chr11	6528085	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr16	23110384	23111362	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	4	-4.8162
chr13	44869602	44869710	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr2	160907608	160907624	protein_coding	Chd6	intron	ENSMUSG00000057133	ProperStrand	8	1	-6.6679
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-5.8506
chr17	39847388	39848077	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	5379081	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	40	-5.1616
chr8	121896731	121896774	SINE	PB1D10	Alu	chr8PB1D10121896718	ProperStrand	1	chr6	91730567	91730667	protein_coding	Grip2	intron	ENSMUSG00000030098	NonProperStrand	3	1	-inf
chr4	132352442	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr7	110046442	110046479	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	2	-5.8783
chr16	23111617	23111701	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr13	12106328	12106347	protein_coding	Ryr2	intron	ENSMUSG00000021313	ProperStrand	3	1	-7.8954
chr11	69667863	69669762	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr16	23110765	23111647	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	2	-3.5554
chr2	168601393	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr16	23110382	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-3.8729
chr12	26415255	26415345	LTR	MLT1E	MaLR	chr12MLT1E26415213	NonProperStrand	1	chr12	26415396	26415476	LTR	MLT1E	MaLR	chr12MLT1E26415389	NonProperStrand	1	1	-inf
chr17	39847657	39847759	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr3	27132054	27132075	protein_coding	Nceh1	intron	ENSMUSG00000027698	ProperStrand	2	1	-6.4812
chr8	109113749	109113829	SINE	B1_Mus1	Alu	chr8B1_Mus1109113689	NonProperStrand	1	chr8	109113518	109113608	SINE	B3	B2	chr8B3109113515	NonProperStrand	1	1	-inf
chr15	34440788	34440922	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr7	109520119	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	5	-7.7933
chr2	98667127	98667217	LINE	L1Md_F2	L1	chr2L1Md_F298667138	ProperStrand	8	chr9	3023509	3023589	lincRNA	Gm16869	intron	ENSMUSG00000087580	ProperStrand	2	1	-18.5064
chr1	177247245	177247325	protein_coding	Rgs7	intron	ENSMUSG00000026527	ProperStrand	4	chr1	164965255	164965345	protein_coding	4921528O07Rik	intron	ENSMUSG00000071890	ProperStrand	1	1	-inf
chr3	98319656	98319730	LINE	L1Md_F	L1	chr3L1Md_F98319123	ProperStrand	1	chr4	100974888	100974920	lincRNA	Gm12796	intron	ENSMUSG00000085721	NonProperStrand	3	1	-inf
chr11	107338042	107338132	SINE	B1_Mm	Alu	chr11B1_Mm107338050	NonProperStrand	2	chr11	107338233	107338313	SINE	B2_Mm2	B2	chr11B2_Mm2107338231	NonProperStrand	2	2	-inf
chr11	29397534	29397614	protein_coding-noncoding	Ccdc88a	utr5	ENSMUSG00000032740	NonProperStrand	1	chr11	29397160	29397250	protein_coding	Ccdc88a	intron	ENSMUSG00000032740	NonProperStrand	2	1	-inf
chr17	39847478	39847568	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr9	110281288	110281321	protein_coding	Scap	intron	ENSMUSG00000032485	NonProperStrand	6	1	-10.7199
chr4	81445041	81445060	LINE	L1_Mm	L1	chr4L1_Mm81444938	NonProperStrand	11	chr2	5379278	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-5.5219
chr11	109011646	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	39846353	39847163	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	99	-14.5323
chr9	75477258	75477348	protein_coding	Lysmd2	intron	ENSMUSG00000032184	NonProperStrand	1	chr19	32349437	32349490	protein_coding	Sgms1	intron	ENSMUSG00000040451	NonProperStrand	8	1	-inf
chr11	84712325	84712405	protein_coding	Myo19	intron	ENSMUSG00000020527	NonProperStrand	2	chr9	21800599	21800689	protein_coding	Ccdc151	intron	ENSMUSG00000039632	ProperStrand	1	1	-inf
chr14	75847904	75848032	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr13	44869606	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	4	-6.6757
chr10	23785346	23785382	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	72917747	72917763	protein_coding	Itgae	intron	ENSMUSG00000005947	NonProperStrand	4	2	-14.1925
chr2	90395141	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	72567748	72567766	protein_coding	Nedd4	intron	ENSMUSG00000032216	NonProperStrand	2	1	-8.9527
chr17	14220148	14220169	LINE	L1Md_F3	L1	chr17L1Md_F314215391	NonProperStrand	1	chr17	39847280	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-inf
chr12	67667732	67667813	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	chr10	106280475	106280565	protein_coding	Ppfia2	intron	ENSMUSG00000053825	ProperStrand	8	7	-inf
chr19	8724034	8724054	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr17	39848099	39848145	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-5.3757
chr17	39847277	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr9	32257103	32257130	protein_coding	Fli1	intron	ENSMUSG00000016087	NonProperStrand	1	1	-inf
chr7	139063953	139063969	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	33	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-4.0970
chr11	109011747	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	80391663	80391729	protein_coding	Zfyve26	intron	ENSMUSG00000066440	ProperStrand	7	2	-7.5582
chr14	75847958	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr9	120130421	120130508	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-3.7221
chr11	109011795	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	75677567	75677589	protein_coding	Agps	intron	ENSMUSG00000042410	NonProperStrand	4	1	-5.5999
chr2	48639575	48639665	LINE	Lx4A	L1	chr2Lx4A48639275	ProperStrand	1	chr2	48639741	48639821	LTR	RLTR10	ERVK	chr2RLTR1048639756	NonProperStrand	1	1	-inf
chr17	39847037	39847102	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	180567593	180567610	lincRNA	Gm14342	intron	ENSMUSG00000086166	NonProperStrand	2	1	-7.0123
chr8	18356350	18356440	LINE	L1MC	L1	chr8L1MC18356373	NonProperStrand	1	chr8	18356848	18356928	LTR	RLTR26	ERVK	chr8RLTR2618356822	NonProperStrand	1	1	-inf
chr2	168958890	168958970	LTR	MTD	MaLR	chr2MTD168958581	NonProperStrand	1	chr2	168958331	168958421	LTR	RLTR27	ERVK	chr2RLTR27168958246	ProperStrand	1	1	-inf
chr16	23111342	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr2	73012885	73012912	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	17	1	-4.1852
chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr10	105238438	105238516	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-9.2394
chr11	101442405	101442428	protein_coding	Nbr1	utr3	ENSMUSG00000017119	ProperStrand	2	chr2	32963368	32963418	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-11.2136
chr2	180385735	180385825	LTR	MYSERV16_I-int	ERVK	chr2MYSERV16_I-int180384455	ProperStrand	1	chr2	180385925	180386004	SINE	B1_Mus2	Alu	chr2B1_Mus2180385900	NonProperStrand	1	1	-inf
chr5	146261174	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	5870248	5870305	protein_coding	Camk2b	utr3	ENSMUSG00000057897	NonProperStrand	4	1	-8.1425
chr1	127566795	127566885	SINE	B3A	B2	chr1B3A127566812	NonProperStrand	1	chr1	127566686	127566766	SINE	B4	B4	chr1B4127566611	NonProperStrand	1	1	-inf
chr12	24455094	24455174	LTR	IAPLTR3-int	ERVK	chr12IAPLTR3-int24455065	NonProperStrand	1	chr12	24454815	24454905	LTR	IAPLTR4	ERVK	chr12IAPLTR424454584	NonProperStrand	1	1	-inf
chr3	110802223	110802313	LINE	Lx	L1	chr3Lx110798876	NonProperStrand	1	chr3	108103692	108103772	protein_coding	Sort1	intron	ENSMUSG00000068747	ProperStrand	2	1	-inf
chr1	136364927	136364972	protein_coding	Klhl12	intron	ENSMUSG00000026455	NonProperStrand	1	chr9	85583128	85583146	protein_coding	Ibtk	intron	ENSMUSG00000035941	ProperStrand	2	1	-inf
chr7	141448825	141448939	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	1	-8.0250
chr13	4947147	4947237	LINE	Lx3_Mus	L1	chr13Lx3_Mus4947092	NonProperStrand	1	chr13	4947438	4947518	LINE	Lx3_Mus	L1	chr13Lx3_Mus4947287	NonProperStrand	1	1	-inf
chr17	88061971	88062051	LTR	MuRRS4-int	ERV1	chr17MuRRS4-int88061983	ProperStrand	1	chr17	88061811	88061901	SINE	B2_Mm1a	B2	chr17B2_Mm1a88061792	ProperStrand	1	1	-inf
chr5	143437888	143437968	SINE	PB1D10	Alu	chr5PB1D10143437835	ProperStrand	1	chr1	79607181	79607271	protein_coding	Ap1s3	intron	ENSMUSG00000054702	NonProperStrand	4	1	-inf
chr4	132352895	132352957	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr10	108363698	108363798	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	1	-7.2399
chr17	70963746	70963836	protein_coding	Dlgap1	intron	ENSMUSG00000003279	NonProperStrand	19	chr16	11144095	11144191	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	2	-15.5252
mmu-miR-6240	2	20	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr17	21962699	21962715	protein_coding	Zfp820	intron	ENSMUSG00000069743	ProperStrand	1	1	-inf
chr17	39847072	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr16	23110382	23111700	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	22	-6.3707
chr4	17866034	17866124	protein_coding	Mmp16	intron	ENSMUSG00000028226	ProperStrand	1	chr12	67667931	67668011	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	1	-inf
chr17	39847651	39847710	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	34020415	34020431	LTR	ORR1A3	MaLR	chr2ORR1A334020122	ProperStrand	3	1	-5.4090
chrX	94189820	94189848	LINE	L1VL2	L1	chrXL1VL294189392	NonProperStrand	10	chr11	69669734	69669777	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-7.0697
chr17	84094763	84094843	SINE	B1_Mur1	Alu	chr17B1_Mur184094742	ProperStrand	1	chr17	84094553	84094643	SINE	B1_Mur4	Alu	chr17B1_Mur484094574	ProperStrand	1	1	-inf
chr13	95330641	95330687	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr16	35981618	35981651	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-4.8814
chr15	98950875	98950965	LTR	RMER17D2	ERVK	chr15RMER17D298950684	NonProperStrand	1	chr15	99034532	99037049	protein_coding	Spats2	intron	ENSMUSG00000051934	ProperStrand	4	1	-inf
chr15	39841928	39841944	LINE	L1Md_F2	L1	chr15L1Md_F239840769	NonProperStrand	3	chr14	63204729	63204747	protein_coding	Fam124a	intron	ENSMUSG00000035184	ProperStrand	3	1	-19.6922
chr17	39845361	39845406	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	43	chr17	39847611	39847723	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	1	-6.6517
chr9	123461822	123461840	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr5	53998710	53998726	protein_coding	Rbpj	intron	ENSMUSG00000039191	ProperStrand	6	1	-5.5993
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	27773073	27773889	protein_coding	Trio	intron	ENSMUSG00000022263	ProperStrand	5	1	-5.1059
chr13	51648297	51648337	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	chr5	114418561	114418580	protein_coding	Ssh1	intron	ENSMUSG00000042121	NonProperStrand	3	1	-15.5051
chr9	19657587	19657667	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	22	chr7	103550786	103550876	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	17	1	-11.4973
chr15	43170378	43170394	LINE	L1VL2	L1	chr15L1VL243169583	NonProperStrand	1	chr4	132352910	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-inf
chr2	90395144	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	110281290	110281347	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	3	-4.3177
chr13	44869594	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr16	23110457	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-3.4391
chr7	141448802	141448882	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr13	54190151	54190168	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	1	-7.2680
chr9	57255882	57255898	LINE	L1Md_Gf	L1	chr9L1Md_Gf57255803	ProperStrand	1	chr17	39847160	39847285	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	1	-inf
chr4	132310016	132310050	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-3.3228
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	16384616	16384653	protein_coding	Gnaq	intron	ENSMUSG00000024639	ProperStrand	2	1	-7.3577
chr16	81646472	81646552	LINE	Lx2B	L1	chr16Lx2B81645308	ProperStrand	1	chr16	81646636	81646726	LINE	Lx2B	L1	chr16Lx2B81646605	ProperStrand	1	1	-inf
chr10	122566606	122566686	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	9	chr2	112146239	112146329	protein_coding	Slc12a6	intron	ENSMUSG00000027130	NonProperStrand	2	1	-18.2634
chr11	97505121	97505211	SINE	B1_Mur2	Alu	chr11B1_Mur297505058	ProperStrand	1	chr11	97504909	97504990	SINE	ID_B1	B4	chr11ID_B197504915	ProperStrand	1	1	-inf
chr12	87437681	87437787	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	3	-6.9215
chr5	33897178	33897258	LINE	L1M5	L1	chr5L1M533897102	ProperStrand	1	chr5	33896962	33897052	SINE	B3	B2	chr5B333896909	ProperStrand	1	1	-inf
chr11	109011747	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	69109076	69109092	antisense	Gm13613	.	ENSMUSG00000086819	ProperStrand	2	1	-7.3577
chr11	57483407	57483423	protein_coding	Galnt10	intron	ENSMUSG00000020520	NonProperStrand	3	chr9	123461945	123462042	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-7.1766
chr4	50179682	50179762	LINE	L1Md_T	L1	chr4L1Md_T50178670	NonProperStrand	1	chr4	48269583	48269673	protein_coding	Erp44	intron	ENSMUSG00000028343	NonProperStrand	3	1	-inf
chr3	96176366	96176436	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr2	90395141	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	2	-5.6533
chr15	6169393	6169483	LINE	L1_Mus1	L1	chr15L1_Mus16169352	NonProperStrand	1	chr15	6169675	6169755	SINE	MIR	MIR	chr15MIR6169625	ProperStrand	1	1	-inf
chr4	132352913	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	mmu-miR-6240	1	24	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	1	-4.0538
chr4	62434608	62434624	LTR	ORR1E	MaLR	chr4ORR1E62434465	NonProperStrand	1	chr9	20890680	20890957	protein_coding	Raver1	exon	ENSMUSG00000010205	NonProperStrand	1	1	-inf
chr17	50420133	50420157	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr17	24719675	24719775	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-6.8090
chr4	120974483	120975380	LINE	L1Md_A	L1	chr4L1Md_A120974141	NonProperStrand	1	chr13	46532077	46532095	SINE	B3	B2	chr13B346531911	ProperStrand	1	1	-inf
chr15	77761617	77761639	LTR	RLTR18B	ERVK	chr15RLTR18B77761280	ProperStrand	1	chr12	105031235	105031337	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-inf
chr2	75164542	75164622	LTR	MTC	MaLR	chr2MTC75164350	ProperStrand	1	chr2	75165075	75165165	SINE	B4	B4	chr2B475164950	ProperStrand	1	1	-inf
chr3	96297864	96297954	LTR	IAPEz-int	ERVK	chr3IAPEz-int96296777	ProperStrand	1	chr3	96297983	96298063	LTR	IAPEz-int	ERVK	chr3IAPEz-int96297949	ProperStrand	1	1	-inf
chr14	86620087	86620105	LINE	L2a	L2	chr14L2a86619508	NonProperStrand	1	chr4	132309477	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr3	86138809	86138855	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	14	chr2	158359867	158359919	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-8.2723
chr8	69103317	69103407	LINE	L1Md_A	L1	chr8L1Md_A69103209	ProperStrand	1	chr8	69103508	69103588	LINE	L1VL4	L1	chr8L1VL469103391	NonProperStrand	1	1	-inf
chr17	39847169	39847220	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr12	80391633	80391723	protein_coding	Zfyve26	intron	ENSMUSG00000066440	ProperStrand	7	1	-5.6609
chr13	108309646	108309736	LINE	L1MD2	L1	chr13L1MD2108309438	ProperStrand	1	chr13	3884145	3884225	protein_coding	Net1	exon	ENSMUSG00000021215	NonProperStrand	1	1	-inf
chrX	162397487	162397504	LINE	L1_Mur2	L1	chrXL1_Mur2162397030	NonProperStrand	1	chr2	90395158	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr17	24720887	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr11	116843218	116843235	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-5.6393
chr13	84855265	84855355	LINE	L1_Mur3	L1	chr13L1_Mur384855267	ProperStrand	1	chr13	84855062	84855142	Simple_repeat	(TG)n	Simple_repeat	chr13(TG)n84855075	ProperStrand	1	1	-inf
chr17	50420127	50420160	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr13	95330673	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	1	-7.7296
chr9	114563145	114563225	SINE	B3	B2	chr9B3114563081	ProperStrand	1	chr9	114563256	114563346	SINE	B3A	B2	chr9B3A114563249	NonProperStrand	1	1	-inf
chr4	88333553	88333633	LTR	RMER12	ERVK	chr4RMER1288333521	NonProperStrand	1	chr4	88333874	88333964	LTR	RMER12	ERVK	chr4RMER1288333794	NonProperStrand	1	1	-inf
chr8	84846814	84846833	LINE	L1Md_F2	L1	chr8L1Md_F284845460	NonProperStrand	2	chr17	39847620	39847718	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-6.4812
chr15	8231185	8231201	LTR	RLTR1C	ERV1	chr15RLTR1C8230887	NonProperStrand	2	chr13	44869923	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chrX	59406115	59406205	LTR	MTD	MaLR	chrXMTD59406112	NonProperStrand	1	chrX	59405569	59405649	SINE	MIR	MIR	chrXMIR59405502	NonProperStrand	1	1	-inf
chr1	40821341	40821431	protein_coding	Slc9a2	intron	ENSMUSG00000026062	NonProperStrand	1	chr1	40897880	40897960	protein_coding	Tmem182	intron	ENSMUSG00000079588	NonProperStrand	1	1	-inf
chr13	49684298	49684376	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	chr2	158358362	158358402	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-6.0096
chr10	86381610	86381700	protein_coding	Stab2	intron	ENSMUSG00000035459	ProperStrand	5	chr10	86638761	86638840	protein_coding	1700113H08Rik	intron	ENSMUSG00000047129	NonProperStrand	1	1	-inf
chr19	8829640	8829730	protein_coding	Stx5a	utr3	ENSMUSG00000010110	NonProperStrand	2	chr19	8845765	8845845	protein_coding	Tmem223	intron	ENSMUSG00000075043	NonProperStrand	2	1	-21.5566
chr2	5304252	5304270	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr11	33754822	33754854	protein_coding	Kcnip1	intron	ENSMUSG00000053519	ProperStrand	4	1	-7.6968
chr8	53800673	53800753	LINE	Lx3_Mus	L1	chr8Lx3_Mus53800381	ProperStrand	1	chr16	98063111	98063201	protein_coding	Prdm15	intron	ENSMUSG00000014039	ProperStrand	4	1	-inf
chr2	168013494	168013574	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	ProperStrand	3	chr2	168013116	168013206	protein_coding	Adnp	utr3	ENSMUSG00000051149	ProperStrand	1	1	-inf
chr18	32416235	32416253	protein_coding	Ercc3	intron	ENSMUSG00000024382	ProperStrand	1	chr1	8899820	8899836	protein_coding	Sntg1	intron	ENSMUSG00000025909	ProperStrand	9	1	-inf
chr11	106245380	106245404	protein_coding	Icam2	intron	ENSMUSG00000001029	NonProperStrand	1	chr10	59951347	59951447	protein_coding	Cdh23	intron	ENSMUSG00000012819	ProperStrand	7	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr9	40804747	40804814	protein_coding	Crtam	intron	ENSMUSG00000032021	NonProperStrand	23	1	-4.5559
chr13	51648198	51648292	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	chr9	123461873	123462006	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	2	-5.5631
chr9	117367780	117367860	protein_coding	Rbms3	intron	ENSMUSG00000039607	NonProperStrand	7	chr9	117372617	117372707	protein_coding	Rbms3	intron	ENSMUSG00000039607	ProperStrand	9	1	-15.2228
chr17	39847508	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	66517052	66517132	LTR	MMERVK10C-int	ERVK	chr17MMERVK10C-int66516064	NonProperStrand	1	1	-inf
chr13	61259291	61259381	LINE	L1Md_F2	L1	chr13L1Md_F261252958	ProperStrand	2	chr13	61259586	61259666	LINE	L1VL1	L1	chr13L1VL161259393	ProperStrand	1	1	-inf
chr11	6619844	6619896	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	chr6	115807978	115808027	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-9.2223
chr8	84674793	84674859	LINE	L1MA6	L1	chr8L1MA684674546	ProperStrand	1	chr6	3201491	3201534	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	1	-inf
chr17	39847492	39847528	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	23818854	23818871	protein_coding	Cldn6	utr3	ENSMUSG00000023906	NonProperStrand	5	1	-4.2576
chr9	119494347	119494437	SINE	B3	B2	chr9B3119494235	NonProperStrand	1	chr9	119494132	119494212	SINE	RSINE1	B4	chr9RSINE1119494029	NonProperStrand	1	1	-inf
chr9	108170496	108170576	SINE	B1F	Alu	chr9B1F108170447	NonProperStrand	1	chr9	108170598	108170688	SINE	B3	B2	chr9B3108170574	NonProperStrand	1	1	-inf
chr5	121132264	121132309	protein_coding	Dtx1	intron	ENSMUSG00000029603	ProperStrand	2	chr17	26223496	26223518	protein_coding	Decr2	intron	ENSMUSG00000036775	NonProperStrand	3	1	-20.8207
chr7	27968515	27968595	SINE	B3	B2	chr7B327968498	NonProperStrand	1	chr7	27968332	27968422	SINE	ID_B1	B4	chr7ID_B127968278	NonProperStrand	1	1	-inf
chr5	70195043	70195123	SINE	B2_Mm2	B2	chr5B2_Mm270194938	NonProperStrand	1	chr5	70195200	70195290	SINE	B2_Mm2	B2	chr5B2_Mm270195129	NonProperStrand	1	1	-inf
chr5	112291749	112291829	LTR	MTD	MaLR	chr5MTD112291758	NonProperStrand	1	chr5	112291604	112291694	LTR	ORR1A1	MaLR	chr5ORR1A1112291572	NonProperStrand	1	1	-inf
chr11	109011796	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	58812322	58812348	protein_coding	P4ha1	intron	ENSMUSG00000019916	NonProperStrand	1	1	-inf
chr14	82033780	82033860	LINE	L1Md_A	L1	chr14L1Md_A82033712	NonProperStrand	1	chr14	82034027	82034117	LINE	L1Md_F2	L1	chr14L1Md_F282033885	ProperStrand	1	1	-inf
chrX	104283214	104283230	Unknown	MamRep605	Unknown	chrXMamRep605104283126	NonProperStrand	2	chr5	100068489	100068526	protein_coding	A930011G23Rik	intron	ENSMUSG00000089809	NonProperStrand	5	1	-19.5000
chr17	39847804	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr19	7373528	7373544	protein_coding	Gm17227	intron	ENSMUSG00000091558	ProperStrand	1	1	-inf
chr9	123461837	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr16	23110821	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	25	-4.0437
chr17	39847662	39847738	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	37187341	37187357	protein_coding	Pcdha4	intron	ENSMUSG00000007440	NonProperStrand	5	1	-4.2576
chr12	105575744	105575834	LINE	L1_Mur2	L1	chr12L1_Mur2105575412	ProperStrand	1	chr12	105576143	105576223	LTR	MTA_Mm	MaLR	chr12MTA_Mm105575998	ProperStrand	1	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr1	182817833	182817853	SINE	RSINE1	B4	chr1RSINE1182817710	ProperStrand	1	1	-inf
chr8	87710565	87710645	LTR	RMER16-int	ERVK	chr8RMER16-int87710542	NonProperStrand	1	chr8	87710330	87710420	Simple_repeat	(TTTTC)n	Simple_repeat	chr8(TTTTC)n87710266	NonProperStrand	1	1	-inf
chr11	109011747	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	6528030	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	9	-7.6169
chr7	125817919	125817999	protein_coding	Tmc5	intron	ENSMUSG00000030650	NonProperStrand	3	chr7	125799050	125799140	protein_coding	Tmc5	intron	ENSMUSG00000030650	ProperStrand	1	1	-inf
chr11	53267044	53267134	SINE	B1_Mur3	Alu	chr11B1_Mur353267040	ProperStrand	1	chr11	53266889	53266969	SINE	B4	B4	chr11B453266698	ProperStrand	1	1	-inf
chr1	75209549	75209639	protein_coding-noncoding	Stk16	utr5	ENSMUSG00000026201	ProperStrand	1	chr1	75208961	75209041	protein_coding	Stk16	intron	ENSMUSG00000026201	ProperStrand	1	1	-inf
chr6	51836990	51837007	protein_coding	Skap2	intron	ENSMUSG00000059182	ProperStrand	3	chr16	23110837	23110883	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chrX	96878739	96878829	LTR	MLT-int	MaLR	chrXMLT-int96878650	NonProperStrand	1	chrX	96878588	96878668	SINE	B2_Mm2	B2	chrXB2_Mm296878571	ProperStrand	1	1	-inf
chr16	43886681	43886718	protein_coding	Qtrtd1	intron	ENSMUSG00000022704	ProperStrand	5	chr9	123462128	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-5.9940
chr14	101269520	101269539	LTR	MLT-int	MaLR	chr14MLT-int101269444	ProperStrand	1	chr3	123507965	123507989	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-inf
chr4	136143880	136143909	protein_coding	Kdm1a	intron	ENSMUSG00000036940	NonProperStrand	1	chr1	167703360	167703385	protein_coding	Creg1	intron	ENSMUSG00000040713	NonProperStrand	1	1	-inf
chr1	45052116	45052206	LINE	L1Md_A	L1	chr1L1Md_A45050836	NonProperStrand	2	chrX	103546094	103546174	LINE	L1_Mus2	L1	chrXL1_Mus2103543082	NonProperStrand	7	2	-inf
chr2	167188138	167188157	LTR	MLT1A0	MaLR	chr2MLT1A0167188137	ProperStrand	1	chr2	158359857	158359931	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-inf
chr7	27707547	27707627	LTR	MERVL_2A-int	ERVL	chr7MERVL_2A-int27707193	NonProperStrand	1	chr7	27707933	27708023	LTR	MT2_Mm	ERVL	chr7MT2_Mm27707841	NonProperStrand	1	1	-inf
chr9	11299119	11299209	LINE	Lx4B	L1	chr9Lx4B11297892	NonProperStrand	1	chr9	11299271	11299351	LINE	Lx5	L1	chr9Lx511299270	NonProperStrand	1	1	-inf
chr16	23110382	23111370	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr5	121205007	121205140	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	8	-4.5575
chr2	32963366	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr16	56035807	56035888	protein_coding	Rg9mtd1	intron	ENSMUSG00000044763	ProperStrand	9	1	-7.6471
chr11	114488300	114488318	LTR	RLTR28	ERVL	chr11RLTR28114488232	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr5	83727328	83727346	protein_coding	Tecrl	intron	ENSMUSG00000049537	NonProperStrand	2	chr19	8888597	8888639	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr11	106692145	106692225	protein_coding-noncoding	Smurf2	utr3	ENSMUSG00000018363	ProperStrand	1	chr11	106691838	106691928	protein_coding	Smurf2	intron	ENSMUSG00000018363	ProperStrand	6	1	-inf
chr17	39847222	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr8	122268074	122268130	protein_coding	Atp2c2	intron	ENSMUSG00000034112	ProperStrand	4	1	-6.8874
chr7	92225283	92225373	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int92225289	ProperStrand	1	chr7	92225148	92225228	LTR	IAPEY3_LTR	ERVK	chr7IAPEY3_LTR92224957	ProperStrand	1	1	-inf
chr13	7634301	7634391	LTR	ETnERV2-int	ERVK	chr13ETnERV2-int7633589	ProperStrand	1	chr19	61175151	61175231	processed_transcript	5830428H23Rik	.	ENSMUSG00000074733	ProperStrand	2	1	-inf
chr2	32348096	32348176	SINE	B3	B2	chr2B332348002	ProperStrand	1	chr2	32348400	32348490	SINE	PB1D10	Alu	chr2PB1D1032348414	ProperStrand	1	1	-inf
chr1	52233098	52233188	protein_coding	Gls	intron	ENSMUSG00000026103	ProperStrand	3	chr8	95746100	95746183	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-13.3766
chr18	19664020	19664110	LTR	IAPEz-int	ERVK	chr18IAPEz-int19663998	NonProperStrand	1	chr18	19663812	19663892	LTR	IAPLTR2_Mm	ERVK	chr18IAPLTR2_Mm19663515	NonProperStrand	1	1	-inf
chr11	53526647	53526737	Other	RMER1C	Other	chr11RMER1C53526519	ProperStrand	1	chr11	53526283	53526363	SINE	B1F1	Alu	chr11B1F153526300	ProperStrand	1	1	-inf
chr8	70895766	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr10	21954544	21954563	protein_coding	H60b	intron	ENSMUSG00000075297	ProperStrand	3	1	-10.0967
chr8	48151137	48151217	protein_coding-noncoding	Enpp6	utr5	ENSMUSG00000038173	ProperStrand	1	chr8	48151251	48151341	protein_coding	Enpp6	exon	ENSMUSG00000038173	ProperStrand	2	1	-inf
chr16	35981618	35981638	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr8	13876106	13876171	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-5.4083
chrX	100042045	100042135	LINE	Lx6	L1	chrXLx6100041884	NonProperStrand	1	chrX	100042326	100042406	LINE	Lx6	L1	chrXLx6100042238	NonProperStrand	1	1	-inf
chr4	132974182	132974202	protein_coding	Slc9a1	intron	ENSMUSG00000028854	ProperStrand	8	chr19	45030209	45033038	protein_coding	Fam178a	intron	ENSMUSG00000036097	NonProperStrand	2	1	-18.5064
chr7	105658486	105658576	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n105658507	NonProperStrand	1	chr7	105658896	105658976	Simple_repeat	(TG)n	Simple_repeat	chr7(TG)n105658712	NonProperStrand	1	1	-inf
chr4	143203446	143203536	LINE	Lx4A	L1	chr4Lx4A143203045	ProperStrand	1	chr4	143203732	143203812	LINE	Lx4A	L1	chr4Lx4A143203646	ProperStrand	1	1	-inf
chr17	39847207	39847277	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	178516120	178516139	LTR	IAPEY3-int	ERVK	chr1IAPEY3-int178515705	ProperStrand	1	1	-inf
chr8	57958351	57958367	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chrX	99218919	99218935	protein_coding	Nhsl2	intron	ENSMUSG00000079481	ProperStrand	4	1	-13.2530
chr8	90993855	90993876	LINE	L1MA6	L1	chr8L1MA690993639	ProperStrand	5	chr11	69669693	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-8.5592
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr8	126944870	126944915	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-3.0089
chr3	137084642	137084732	protein_coding-noncoding	Emcn	utr5	ENSMUSG00000054690	NonProperStrand	1	chr3	137084838	137084918	protein_coding	Emcn	intron	ENSMUSG00000054690	NonProperStrand	2	1	-inf
chr17	39846410	39847062	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr17	39847844	39848073	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	4	-14.7280
chr11	47133143	47133233	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	14	chr11	98626951	98627031	protein_coding	Thra	intron	ENSMUSG00000058756	ProperStrand	1	1	-inf
chr11	121662070	121662150	Other	RMER1C	Other	chr11RMER1C121662018	ProperStrand	1	chr11	121662333	121662423	Other	RMER1C	Other	chr11RMER1C121662192	ProperStrand	1	1	-inf
chr16	43886738	43886816	protein_coding	Qtrtd1	intron	ENSMUSG00000022704	ProperStrand	5	chr2	5304251	5304270	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-7.1918
chr13	56370165	56370244	DNA	MER63B	AcHobo	chr13MER63B56370159	ProperStrand	1	chr13	56369979	56370069	SINE	B2_Mm2	B2	chr13B2_Mm256369960	ProperStrand	1	1	-inf
chr1	35003303	35003322	LINE	L1Md_F2	L1	chr1L1Md_F235003280	NonProperStrand	1	chr17	39847550	39847597	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr1	39381524	39385135	protein_coding	Npas2	intron	ENSMUSG00000026077	NonProperStrand	4	chr1	72716087	72716162	protein_coding	Ankar	intron	ENSMUSG00000039342	NonProperStrand	4	1	-18.2441
chr8	83673223	83673240	LINE	L1_Mur1	L1	chr8L1_Mur183672975	NonProperStrand	4	chr17	39846847	39846869	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-5.2608
chr1	144761575	144761595	LINE	L3	CR1	chr1L3144761427	NonProperStrand	1	chr17	24719675	24719714	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-inf
chr17	39847555	39847598	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	66409349	66409370	protein_coding	Scn9a	intron	ENSMUSG00000075316	NonProperStrand	2	1	-6.4812
chr7	12875464	12875554	LINE	L1Md_T	L1	chr7L1Md_T12868555	ProperStrand	1	chr7	12875634	12875714	LINE	L1_Mur2	L1	chr7L1_Mur212875628	ProperStrand	1	1	-inf
chr4	141744663	141744743	protein_coding	Kazn	intron	ENSMUSG00000040606	ProperStrand	7	chr4	141565612	141565702	protein_coding	Fhad1	intron	ENSMUSG00000051435	ProperStrand	6	1	-16.0980
chr14	75847946	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr17	34950997	34951017	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-5.9028
chr11	109011792	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	136364888	136364958	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	10	1	-3.6858
chr1	187745057	187745137	LTR	MTC	MaLR	chr1MTC187745068	ProperStrand	1	chr1	187745700	187745790	SINE	B4A	B4	chr1B4A187745649	ProperStrand	1	1	-inf
chr11	6620354	6620443	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	2	-4.9152
chr9	7108298	7108378	protein_coding	Dync2h1	intron	ENSMUSG00000047193	NonProperStrand	3	chr7	103550726	103550816	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	16	1	-15.9643
chr5	114851985	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr12	105031082	105031194	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-3.6381
chr14	75847915	75847945	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr7	110046442	110046476	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	1	-4.8772
chr17	39846429	39846462	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr15	102240206	102240306	protein_coding	Sp1	intron	ENSMUSG00000001280	NonProperStrand	2	1	-7.0123
chr4	46078468	46083557	protein_coding	Tmod1	intron	ENSMUSG00000028328	ProperStrand	4	chr4	43522756	43523272	protein_coding	Car9	intron	ENSMUSG00000028463	NonProperStrand	1	1	-inf
chr16	23110416	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr5	150953040	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	3	-4.0180
chr10	91118395	91118533	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr13	44869606	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	2	-6.2564
chr5	114851994	114852016	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr10	105238489	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-4.1786
chr2	66741829	66741919	LINE	L1_Mus3	L1	chr2L1_Mus366741459	ProperStrand	1	chr2	66741964	66742044	LTR	MTD	MaLR	chr2MTD66741951	ProperStrand	1	1	-inf
chr18	75132929	75133009	SINE	B1_Mm	Alu	chr18B1_Mm75132892	ProperStrand	1	chr18	75133062	75133152	SINE	B1_Mur2	Alu	chr18B1_Mur275133067	ProperStrand	1	1	-inf
chr4	7266116	7266196	LINE	L1M4	L1	chr4L1M47265659	NonProperStrand	1	chr4	7266274	7266364	LINE	L1M5	L1	chr4L1M57266282	NonProperStrand	1	1	-inf
chr2	5379292	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr12	21237638	21237656	protein_coding	Asap2	intron	ENSMUSG00000052632	NonProperStrand	5	1	-7.1918
chr10	77484239	77484329	LTR	IAPEz-int	ERVK	chr10IAPEz-int77483368	NonProperStrand	1	chr10	77484731	77484811	LTR	IAPEz-int	ERVK	chr10IAPEz-int77484693	NonProperStrand	1	1	-inf
chr11	97781675	97781761	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr4	56897649	56897746	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	2	-9.7727
chr3	123507990	123508064	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr5	24402096	24402112	protein_coding	Prkag2	intron	ENSMUSG00000028944	ProperStrand	8	1	-6.6423
chr17	39843489	39843509	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	chr8	70895775	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-2.9962
chr5	146261268	146261321	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr4	132974182	132974201	protein_coding	Slc9a1	intron	ENSMUSG00000028854	ProperStrand	8	1	-9.7883
chr11	109011819	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	10217813	10217830	protein_coding	Prlr	intron	ENSMUSG00000005268	ProperStrand	5	1	-5.1059
chr17	39847181	39847219	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr17	35146762	35146786	protein_coding	Vars	intron	ENSMUSG00000007029	ProperStrand	3	1	-7.5717
chr14	32191852	32191892	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr10	42856799	42856824	protein_coding	Sobp	intron	ENSMUSG00000038248	ProperStrand	2	1	-16.1448
chr11	6280747	6280837	SINE	B2_Mm1t	B2	chr11B2_Mm1t6280626	NonProperStrand	1	chr11	6280410	6280490	SINE	RSINE1	B4	chr11RSINE16280428	ProperStrand	1	1	-inf
chr1	5170738	5170765	LINE	Lx4B	L1	chr1Lx4B5169206	NonProperStrand	11	chr2	32963394	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-7.2282
chr13	91432419	91432509	LTR	MLT2B3	ERVL	chr13MLT2B391432398	NonProperStrand	1	chr13	91432143	91432223	SINE	B1_Mur2	Alu	chr13B1_Mur291432130	ProperStrand	1	1	-inf
chr11	106501241	106501328	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	2	-6.5972
chr11	30118415	30118432	protein_coding-noncoding	Spnb2	utr3	ENSMUSG00000020315	ProperStrand	1	chr2	52848330	52848349	protein_coding	Fmnl2	intron	ENSMUSG00000036053	ProperStrand	3	1	-inf
chr3	33840752	33840832	LINE	L1_Mus1	L1	chr3L1_Mus133840699	NonProperStrand	1	chr3	33840508	33840598	LINE	Lx5	L1	chr3Lx533839293	ProperStrand	1	1	-inf
chr13	9834333	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr11	59076322	59076338	protein_coding	Wnt3a	intron	ENSMUSG00000009900	ProperStrand	7	1	-14.0184
chr17	31572099	31572120	protein_coding	Pde9a	intron	ENSMUSG00000041119	ProperStrand	3	chr16	23110833	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr3	101461780	101461849	LTR	ORR1C1	MaLR	chr3ORR1C1101461642	ProperStrand	1	chr9	123461891	123461932	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-4.8713
chr12	44047369	44047459	LTR	ORR1D1-int	MaLR	chr12ORR1D1-int44047148	NonProperStrand	1	chr12	44046875	44046955	LTR	ORR1D1	MaLR	chr12ORR1D144046760	NonProperStrand	1	1	-inf
chr17	39846759	39846816	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	20190409	20190444	protein_coding	Yeats2	intron	ENSMUSG00000041215	ProperStrand	1	1	-inf
chr2	44927457	44927475	protein_coding	Zeb2	intron	ENSMUSG00000026872	NonProperStrand	3	chr2	5379296	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-8.3841
chr2	177479016	177479096	LINE	L1VL1	L1	chr2L1VL1177476150	NonProperStrand	3	chr2	175091096	175091186	LTR	RLTR45-int	ERVK	chr2RLTR45-int175090342	NonProperStrand	1	1	-inf
chr17	87155249	87155339	protein_coding	Epas1	intron	ENSMUSG00000024140	NonProperStrand	2	chr17	86905761	86905841	protein_coding	Prkce	intron	ENSMUSG00000045038	ProperStrand	10	1	-18.0412
chrX	72992111	72992132	lincRNA	4933407K13Rik	exon	ENSMUSG00000087396	NonProperStrand	7	chr17	66119070	66119088	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	6	1	-16.0980
chr16	23110821	23110874	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr11	68212392	68212450	protein_coding	Ntn1	intron	ENSMUSG00000020902	ProperStrand	11	1	-5.0462
chr5	85939307	85939326	LINE	L1Md_F	L1	chr5L1Md_F85936677	NonProperStrand	6	chr6	131380326	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	1	-13.3588
chr17	39846461	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	80834543	80834559	protein_coding	Fzr1	intron	ENSMUSG00000020235	NonProperStrand	1	1	-inf
chr10	23785379	23785472	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr11	117077242	117077305	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-4.9249
chr7	110046444	110046461	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-7.0187
chr3	131016624	131016641	lincRNA	4930534D22Rik	intron	ENSMUSG00000091852	ProperStrand	1	chr11	50207178	50207227	protein_coding	Rufy1	intron	ENSMUSG00000020375	ProperStrand	2	1	-inf
chr17	39846644	39846683	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	121204746	121204763	protein_coding	Slc44a3	intron	ENSMUSG00000039865	ProperStrand	2	1	-7.0123
chr18	90023007	90023087	LINE	L1MC	L1	chr18L1MC90022897	ProperStrand	1	chr18	90023136	90023226	LTR	RMER12	ERVK	chr18RMER1290023143	NonProperStrand	1	1	-inf
chr8	95746100	95746183	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	chr8	13876193	13876226	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-6.4526
chr2	90395142	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	26090244	26090324	protein_coding	Qsox2	intron	ENSMUSG00000036327	ProperStrand	2	1	-8.9527
chr13	112578205	112578295	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr6	91755755	91755835	protein_coding	Grip2	intron	ENSMUSG00000030098	NonProperStrand	3	1	-9.2275
chr11	109011747	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	109012008	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	6	-3.4496
chr14	96546573	96546663	protein_coding	Klhl1	intron	ENSMUSG00000022076	ProperStrand	5	chr14	104882440	104882520	protein_coding	Rnf219	intron	ENSMUSG00000022120	ProperStrand	1	1	-inf
chr14	75847958	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr2	168011156	168011180	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	1	-8.8645
chr11	96819155	96819232	protein_coding	Sp2	intron	ENSMUSG00000018678	ProperStrand	4	chr17	24720869	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-9.2419
chr5	146261117	146261221	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr19	8252253	8252277	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	1	-5.2025
chr14	63701539	63701619	LINE	L1_Mus3	L1	chr14L1_Mus363701503	ProperStrand	1	chr14	63701381	63701471	LINE	L2a	L2	chr14L2a63701097	NonProperStrand	1	1	-inf
chr12	110657950	110657984	SINE	ID_B1	B4	chr12ID_B1110657900	NonProperStrand	1	chr17	34950980	34951002	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-inf
chr11	78524764	78524784	LINE	Lx8	L1	chr11Lx878524765	ProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chrX	20950505	20950522	SINE	B1F2	Alu	chrXB1F220950448	ProperStrand	1	chr11	69669692	69669730	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-inf
chr17	39847080	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr15	80078555	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	2	-3.2789
chr17	39847092	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr17	39848258	39848368	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	1	-7.9281
chr5	31945129	31945209	protein_coding-noncoding	Mrpl33	utr5	ENSMUSG00000029142	ProperStrand	1	chr5	31945420	31945510	protein_coding	Mrpl33	intron	ENSMUSG00000029142	ProperStrand	2	1	-inf
chr2	168601397	168601415	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr7	28386522	28386539	protein_coding	Akt2	intron	ENSMUSG00000004056	ProperStrand	11	1	-12.5968
chr8	64998609	64998626	LINE	L1_Mur3	L1	chr8L1_Mur364998290	ProperStrand	2	chr13	44869941	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chr16	65211530	65211553	LINE	Lx9	L1	chr16Lx965211360	ProperStrand	1	chr1	122357204	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	1	-inf
chr10	100439833	100439913	LINE	L1_Mur3	L1	chr10L1_Mur3100439559	ProperStrand	1	chr10	100439960	100440050	LINE	Lx2A1	L1	chr10Lx2A1100439941	ProperStrand	1	1	-inf
chr17	39847107	39847123	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr9	72925871	72925888	protein_coding	Rab27a	intron	ENSMUSG00000032202	NonProperStrand	3	1	-7.5717
chr14	53833976	53834066	LTR	MTA_Mm	MaLR	chr14MTA_Mm53833912	ProperStrand	1	chr14	53833699	53833779	protein_coding	Rps19-ps1	exon	ENSMUSG00000071476	ProperStrand	1	1	-inf
chr18	33795162	33795252	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr19	8888597	8888673	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-5.3079
chr16	61056434	61056455	LTR	MMERVK10C-int	ERVK	chr16MMERVK10C-int61056305	ProperStrand	9	chr17	24720777	24720849	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-7.4635
chr12	75527234	75527314	LINE	L1MC3	L1	chr12L1MC375525467	NonProperStrand	1	chr12	75524410	75524500	LTR	MTA_Mm	MaLR	chr12MTA_Mm75524116	ProperStrand	1	1	-inf
chr17	39847116	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr17	39847338	39847864	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	7	-24.6064
chr8	111204247	111204337	SINE	PB1D10	Alu	chr8PB1D10111204261	ProperStrand	1	chr19	4888531	4888611	protein_coding	Bbs1	utr3	ENSMUSG00000006464	NonProperStrand	2	1	-inf
chr17	39847165	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	3835102	3835147	protein_coding	Plag1	intron	ENSMUSG00000003282	ProperStrand	2	1	-8.6616
chr16	23110755	23110880	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr5	35266216	35266236	protein_coding	A930005I04Rik	utr3	ENSMUSG00000051246	NonProperStrand	9	1	-5.4552
chr11	3184258	3184338	LTR	RMER19B	ERVK	chr11RMER19B3183798	ProperStrand	1	chr11	3184627	3184717	SINE	B1_Mm	Alu	chr11B1_Mm3184639	ProperStrand	1	1	-inf
chr17	39847428	39847981	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	35557030	35562133	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	15	-5.6625
chr17	39847277	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chrX	116869065	116869089	LTR	ORR1D1	MaLR	chrXORR1D1116869062	NonProperStrand	1	1	-inf
chrX	4899368	4899402	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	1	-10.4601
chr14	30037158	30037238	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	10	chr10	120215207	120215297	protein_coding	4921513I03Rik	utr5	ENSMUSG00000044544	ProperStrand	1	1	-inf
chr5	146260994	146261226	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	12	-10.2921
chr17	39846953	39846990	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	13574857	13574956	protein_coding	St8sia6	utr3	ENSMUSG00000003418	NonProperStrand	6	1	-4.3847
chr17	39845197	39845234	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	43	chr9	10656341	10656357	protein_coding	Cntn5	intron	ENSMUSG00000039488	NonProperStrand	10	1	-11.2402
chr6	78154315	78154333	LINE	L1_Mus4	L1	chr6L1_Mus478154029	ProperStrand	1	chr14	75972539	75972603	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	1	-inf
chr15	85459232	85459312	SINE	B1_Mur1	Alu	chr15B1_Mur185459182	NonProperStrand	2	chr15	85459117	85459207	SINE	B4	B4	chr15B485459088	NonProperStrand	1	1	-inf
chr7	103550786	103550866	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	16	chr14	44181780	44181870	protein_coding	Gm10375	intron	ENSMUSG00000072602	NonProperStrand	1	1	-inf
chr17	39847116	39847161	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	67455837	67455937	protein_coding	Gas7	intron	ENSMUSG00000033066	ProperStrand	6	1	-5.9886
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr14	52172551	52173491	protein_coding	Gm5622	utr5	ENSMUSG00000079244	NonProperStrand	2	1	-9.9953
chr10	23785344	23785429	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr13	95330598	95330661	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	2	-3.8519
chr11	93718486	93718576	DNA	RCHARR1	MER1_type	chr11RCHARR193718161	NonProperStrand	1	chr11	93718697	93718777	LINE	L1_Mus1	L1	chr11L1_Mus193718665	ProperStrand	1	1	-inf
chr5	146261278	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr10	105238494	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-6.3941
chr14	75847918	75847986	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chrX	94189807	94189835	LINE	L1VL2	L1	chrXL1VL294189392	NonProperStrand	10	1	-9.2455
chr4	106682558	106682648	protein_coding-noncoding	Ssbp3	utr5	ENSMUSG00000061887	NonProperStrand	1	chr4	106683119	106683199	protein_coding	Ssbp3	intron	ENSMUSG00000061887	NonProperStrand	7	1	-inf
chr15	76175334	76175434	protein_coding	Cyc1	intron	ENSMUSG00000022551	NonProperStrand	4	chr4	132309952	132309969	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-7.9626
chr5	146261081	146261110	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr3	121725026	121725043	SINE	B2_Mm1t	B2	chr3B2_Mm1t121724986	ProperStrand	1	1	-inf
chr5	135054037	135054119	LINE	L1Md_F2	L1	chr5L1Md_F2135054047	NonProperStrand	9	chr2	90395142	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-5.4222
chr8	74802371	74802461	SINE	B1_Mm	Alu	chr8B1_Mm74802359	ProperStrand	1	chr8	74802528	74802608	SINE	B4A	B4	chr8B4A74802549	ProperStrand	1	1	-inf
chr8	38561924	38562004	LTR	MMETn-int	ERVK	chr8MMETn-int38561904	ProperStrand	1	chr8	38562345	38562435	LTR	RLTRETN_Mm	ERVK	chr8RLTRETN_Mm38562123	ProperStrand	1	1	-inf
chr9	120130464	120130509	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr17	56425680	56425708	protein_coding	Plin3	exon	ENSMUSG00000024197	ProperStrand	3	1	-11.2767
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	3	-11.3200
chr11	109011795	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	63049923	63049941	protein_coding	Arap2	intron	ENSMUSG00000037999	NonProperStrand	5	1	-5.1059
chr18	36594924	36594940	protein_coding	Pfdn1	intron	ENSMUSG00000024346	ProperStrand	6	chr16	23110892	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.9943
chr11	97781674	97781745	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr5	107905176	107907442	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	2	-5.8069
chr11	6073016	6073096	protein_coding	Nudcd3	intron	ENSMUSG00000053838	ProperStrand	1	chr11	6072893	6072983	pseudogene	Rps15a-ps6	.	ENSMUSG00000083022	ProperStrand	1	1	-inf
chr18	63809223	63809313	LTR	RLTR18	ERVK	chr18RLTR1863808913	NonProperStrand	1	chr18	63809761	63809841	LTR	RMER15-int	ERVL	chr18RMER15-int63809628	ProperStrand	1	1	-inf
chr1	163350607	163350687	LTR	RMER13B	ERVK	chr1RMER13B163350575	ProperStrand	1	chr1	163351212	163351302	Low_complexity	CT-rich	Low_complexity	chr1CT-rich163351210	ProperStrand	1	1	-inf
chr8	110098528	110098608	LTR	MTC	MaLR	chr8MTC110098359	NonProperStrand	1	chr8	110098643	110098733	LTR	RMER6A	ERVK	chr8RMER6A110098619	ProperStrand	1	1	-inf
chr11	3456913	3456930	LINE	L1MC4a	L1	chr11L1MC4a3456901	ProperStrand	1	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr13	97190551	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr7	28351522	28351633	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	3	-6.8532
chr8	120128232	120128322	protein_coding	Plcg2	intron	ENSMUSG00000034330	NonProperStrand	4	chr3	31206327	31206407	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	5	1	-17.7431
chr1	139749831	139749911	LINE	L1MA4	L1	chr1L1MA4139748855	NonProperStrand	2	chr1	139750063	139750153	SINE	B3	B2	chr1B3139749993	ProperStrand	2	2	-inf
chr16	23111629	23111698	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr1	9563909	9563944	protein_coding	Adhfe1	intron	ENSMUSG00000025911	ProperStrand	2	1	-8.9865
chr17	28821278	28821294	protein_coding	Slc26a8	intron	ENSMUSG00000036196	NonProperStrand	1	chr2	5379232	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr5	120623756	120623964	protein_coding	Rbm19	intron	ENSMUSG00000029594	ProperStrand	4	chr16	23110837	23110865	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr1	100180181	100180214	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	6	chr17	39847800	39847885	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-3.8783
chr17	39846631	39847102	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr7	15949474	15949490	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	2	-3.4877
chr1	131355828	131355874	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	21	chr8	126944899	126944917	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-7.1789
chr5	3239880	3239970	LINE	Lx8	L1	chr5Lx83239845	ProperStrand	1	chr5	3239675	3239755	SINE	B4A	B4	chr5B4A3239660	ProperStrand	1	1	-inf
chr10	80060924	80061014	LTR	RMER6B	ERVK	chr10RMER6B80060774	NonProperStrand	1	chr10	80060638	80060718	SINE	B1_Mus2	Alu	chr10B1_Mus280060638	NonProperStrand	1	1	-inf
chr11	106501255	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr2	158359821	158359865	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-3.1158
chr1	180803118	180803198	protein_coding	Kif26b	intron	ENSMUSG00000026494	NonProperStrand	4	chr5	140546882	140546972	protein_coding	Mad1l1	intron	ENSMUSG00000029554	NonProperStrand	9	1	-16.4751
chr17	34950982	34951007	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr18	35557158	35557176	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-4.9437
chr13	103290558	103290648	SINE	B1_Mur2	Alu	chr13B1_Mur2103290540	NonProperStrand	1	chr13	103290677	103290757	Simple_repeat	(GGA)n	Simple_repeat	chr13(GGA)n103290691	NonProperStrand	1	1	-inf
chr11	109011747	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	82617111	82617129	protein_coding	Synj2bp	intron	ENSMUSG00000090935	ProperStrand	1	1	-inf
chr13	6171664	6171754	LINE	L1Md_F2	L1	chr13L1Md_F26171678	NonProperStrand	1	chr13	6171569	6171649	LINE	Lx4A	L1	chr13Lx4A6171528	ProperStrand	1	1	-inf
chr10	50161968	50162058	LINE	L1_Mur3	L1	chr10L1_Mur350161645	NonProperStrand	1	chr10	50162541	50162621	Low_complexity	GA-rich	Low_complexity	chr10GA-rich50162438	NonProperStrand	1	1	-inf
chr17	39847346	39848070	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	123461802	123462189	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	70	-6.4009
chr10	129437232	129437248	LTR	MYSERV-int	ERVK	chr10MYSERV-int129437091	ProperStrand	1	chr19	8888597	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-inf
chr15	102280573	102280612	protein_coding	Amhr2	intron	ENSMUSG00000023047	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr11	115471356	115471436	protein_coding	Mif4gd	intron	ENSMUSG00000020743	NonProperStrand	1	chr1	59191707	59191797	protein_coding	Mpp4	intron	ENSMUSG00000079550	NonProperStrand	1	1	-inf
chr5	146261080	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr17	24719675	24719800	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	5	-6.7080
chr11	109011752	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr4	86928612	86928630	LTR	ORR1B1	MaLR	chr4ORR1B186928275	NonProperStrand	5	2	-8.7729
chr15	30325397	30325415	protein_coding	Ctnnd2	intron	ENSMUSG00000022240	NonProperStrand	10	chr9	123462026	123462102	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-4.5433
chr3	56183307	56183325	LINE	L1Md_A	L1	chr3L1Md_A56183116	ProperStrand	5	chr17	39847844	39847890	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-4.2576
chr10	91118352	91118420	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr5	146261175	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-3.6362
chr13	44869606	44869676	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr2	112772968	112772986	protein_coding	Ryr3	intron	ENSMUSG00000057378	NonProperStrand	9	1	-6.4211
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr4	145745109	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-3.9227
chr3	140473204	140473294	LINE	L2	L2	chr3L2140473113	ProperStrand	1	chr3	139991253	139991333	LINE	Lx9	L1	chr3Lx9139991242	NonProperStrand	1	1	-inf
chr17	39847440	39847470	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	27842503	27842520	protein_coding	Col5a1	intron	ENSMUSG00000026837	NonProperStrand	3	1	-5.4090
chr17	46496778	46496831	LTR	RMER17C	ERVK	chr17RMER17C46496679	ProperStrand	1	chr15	34440825	34440921	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-inf
chr17	39847181	39847227	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	123293149	123293242	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	2	-3.0654
chr11	5071055	5071135	LTR	MLT1A1	MaLR	chr11MLT1A15071061	ProperStrand	1	chr11	5071540	5071630	SINE	B4A	B4	chr11B4A5071554	NonProperStrand	1	1	-inf
chr2	90395129	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr17	24719675	24719758	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	4	-3.1470
chr13	112578231	112578306	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr18	71614207	71614224	protein_coding	Dcc	intron	ENSMUSG00000060534	ProperStrand	6	1	-7.6295
chr5	114851973	114852041	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr5	107905201	107907445	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	4	-7.3703
chr2	168011157	168011180	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	chr9	123461882	123462022	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	2	-7.1126
chr11	109011745	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr5	17776753	17776777	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	1	-3.1856
chr2	38050106	38050196	protein_coding	Dennd1a	intron	ENSMUSG00000035392	ProperStrand	6	chr2	38656845	38656925	protein_coding	Nr6a1	intron	ENSMUSG00000063972	NonProperStrand	2	1	-19.1249
chr3	41566083	41566100	LTR	MER70A	ERVL	chr3MER70A41565974	ProperStrand	1	chr16	23110867	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr13	49684351	49684373	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-3.3720
chr17	39846353	39846493	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	118674951	118675016	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	10	2	-5.8900
chr13	99435446	99435464	LTR	MT2A	ERVL	chr13MT2A99435045	ProperStrand	1	chr17	39846963	39846989	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr1	40480229	40480319	LINE	L1MD	L1	chr1L1MD40480123	ProperStrand	1	chr1	40480375	40480455	Simple_repeat	(TA)n	Simple_repeat	chr1(TA)n40480398	NonProperStrand	1	1	-inf
chr17	39846660	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	153910615	153911688	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	16	2	-4.4839
chrX	74272500	74272566	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr8	126944948	126944971	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-5.3017
chr3	83054843	83054860	LINE	L1MA7	L1	chr3L1MA783054599	ProperStrand	1	chr3	123507995	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-inf
chr13	44869942	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr2	162313829	162313846	protein_coding	Ptprt	intron	ENSMUSG00000053141	NonProperStrand	8	1	-6.6679
chr17	39847844	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr19	7035694	7039913	protein_coding	Plcb3	intron	ENSMUSG00000024960	NonProperStrand	2	1	-13.4248
chr17	39847152	39847320	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	69667884	69669780	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	10	-5.0005
chrX	134095689	134095779	DNA	URR1B	MER1_type	chrXURR1B134095660	ProperStrand	1	chrX	134095965	134096045	LINE	Lx9	L1	chrXLx9134095765	NonProperStrand	1	1	-inf
chr17	39847676	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr8	119912640	119912658	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	NonProperStrand	7	1	-3.5679
chr17	39846683	39846773	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	6619908	6619945	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	1	-3.0222
chr5	143742904	143742984	SINE	B1_Mur3	Alu	chr5B1_Mur3143742864	ProperStrand	1	chr5	143743263	143743354	Simple_repeat	(TAGA)n	Simple_repeat	chr5(TAGA)n143743205	ProperStrand	1	1	-inf
chr6	12788066	12788146	LTR	RMER5	ERV1	chr6RMER512788067	ProperStrand	1	chr11	51793554	51793644	lincRNA	Gm16953	intron	ENSMUSG00000087101	ProperStrand	2	1	-inf
chr17	51195263	51195353	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	ProperStrand	5	chr9	96061504	96061584	protein_coding	Gk5	intron	ENSMUSG00000041440	NonProperStrand	2	1	-19.4797
chr6	78798822	78798841	LINE	L1Md_T	L1	chr6L1Md_T78798491	NonProperStrand	1	chr16	23110903	23110935	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr10	127065220	127065240	LINE	L2c	L2	chr10L2c127065156	NonProperStrand	1	chr17	39846588	39846651	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr3	89466576	89466666	protein_coding-noncoding	Kcnn3	utr5	ENSMUSG00000000794	NonProperStrand	1	chr3	89466896	89466976	protein_coding	Kcnn3	intron	ENSMUSG00000000794	NonProperStrand	9	1	-inf
chrX	87238368	87238413	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr10	91118341	91118386	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	1	-7.0691
chr7	13011984	13012073	LINE	L1_Mus2	L1	chr7L1_Mus213010580	ProperStrand	1	chr7	13012164	13012244	LINE	L1_Mus2	L1	chr7L1_Mus213012140	ProperStrand	1	1	-inf
chr17	39846961	39847001	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	164406238	164406304	protein_coding	Dnm3	intron	ENSMUSG00000040265	NonProperStrand	6	1	-4.3847
chr17	23762249	23762266	LINE	Lx9	L1	chr17Lx923762089	ProperStrand	1	chr14	32191954	32191985	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	1	-inf
chrX	58456010	58456090	LTR	MLT1B	MaLR	chrXMLT1B58455976	ProperStrand	1	chrX	58456285	58456375	LTR	ORR1D1-int	MaLR	chrXORR1D1-int58456206	ProperStrand	1	1	-inf
chr17	39846966	39846987	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	109999627	109999644	protein_coding	Wwp2	intron	ENSMUSG00000031930	ProperStrand	5	1	-4.7701
chr17	39847216	39847249	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	38037270	38037383	protein_coding	Rreb1	intron	ENSMUSG00000039087	ProperStrand	3	1	-7.5717
chr6	50561960	50562050	LTR	IAPLTR1a_Mm	ERVK	chr6IAPLTR1a_Mm50561893	ProperStrand	1	chr16	87368321	87368401	protein_coding	N6amt1	utr3	ENSMUSG00000044442	ProperStrand	1	1	-inf
chr16	38158073	38158132	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	chr7	126765714	126765778	protein_coding	Acsm1	intron	ENSMUSG00000033533	ProperStrand	4	1	-14.7108
chr4	155105924	155106042	protein_coding	Ssu72	intron	ENSMUSG00000029038	ProperStrand	1	chr10	80417214	80417317	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	6	1	-inf
chr9	123461802	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr8	126944852	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	6	-4.4414
chr12	37002345	37002363	LTR	ORR1C2	MaLR	chr12ORR1C237002097	ProperStrand	2	chr17	24720821	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-11.0283
chr3	31387431	31387513	LINE	L1Md_F2	L1	chr3L1Md_F231387014	ProperStrand	2	chr3	31387871	31387961	LINE	Lx8	L1	chr3Lx831387889	ProperStrand	2	2	-inf
chr2	90395142	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr10	127567427	127576532	protein_coding	Rbms2	utr3	ENSMUSG00000040043	ProperStrand	6	2	-10.4606
chr2	5379271	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	3	-4.8382
chr11	53585693	53585783	protein_coding	Irf1	intron	ENSMUSG00000018899	NonProperStrand	1	chr7	30179292	30179372	protein_coding	Sipa1l3	intron	ENSMUSG00000030583	ProperStrand	7	1	-inf
chr17	25784365	25784541	protein_coding-noncoding	Lmf1	utr5	ENSMUSG00000002279	NonProperStrand	1	chr17	25784677	25785035	protein_coding	Lmf1	intron	ENSMUSG00000002279	NonProperStrand	1	1	-inf
chr11	106501271	106501291	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr6	54816945	54816974	protein_coding	Znrf2	intron	ENSMUSG00000058446	ProperStrand	2	1	-11.9816
chr11	113901596	113901612	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	chr5	107907344	107907372	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-5.7611
chr2	153893342	153893422	LINE	L1_Mus2	L1	chr2L1_Mus2153891737	NonProperStrand	1	chr2	153893636	153893726	LTR	MurERV4_19-int	ERVK	chr2MurERV4_19-int153893607	NonProperStrand	1	1	-inf
chr7	47188535	47188615	LTR	ORR1A4	MaLR	chr7ORR1A447188454	ProperStrand	7	chr6	101621519	101621609	SINE	RSINE1	B4	chr6RSINE1101621513	ProperStrand	1	1	-inf
chr16	11144107	11144197	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chr2	132545728	132545748	protein_coding	1110034G24Rik	intron	ENSMUSG00000044991	ProperStrand	2	1	-14.9073
chr5	129789633	129789673	Simple_repeat	(CGGGG)n	Simple_repeat	chr5(CGGGG)n129789606	ProperStrand	10	chr9	123462018	123462161	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	2	-7.6947
chr5	74093614	74093651	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	chr16	23110867	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.7386
chr8	70895758	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr4	56897676	56897755	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-4.6756
chr10	23785343	23785462	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr2	90395129	90395190	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	21	-18.3623
chr17	39848705	39848744	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr1	63577857	63577957	protein_coding-noncoding	Adam23	utr5	ENSMUSG00000025964	ProperStrand	1	1	-inf
chr17	39847277	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	102829377	102829448	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	15	1	-4.1212
chr9	78742185	78742275	LTR	RMER20B	ERVK	chr9RMER20B78742102	ProperStrand	1	chr9	80022649	80022729	protein_coding	Myo6	intron	ENSMUSG00000033577	ProperStrand	2	1	-inf
chr18	4433897	4433987	LINE	L1_Mur3	L1	chr18L1_Mur34433860	NonProperStrand	1	chr18	30447284	30447364	protein_coding	Pik3c3	intron	ENSMUSG00000033628	NonProperStrand	1	1	-inf
chr16	20667923	20668003	SINE	B4	B4	chr16B420667853	ProperStrand	1	chr16	20667735	20667825	Simple_repeat	(TTTC)n	Simple_repeat	chr16(TTTC)n20667736	NonProperStrand	1	1	-inf
chr2	109451813	109451893	LINE	L1Md_F2	L1	chr2L1Md_F2109451360	NonProperStrand	1	chr2	109452031	109452121	LTR	BGLII	ERVK	chr2BGLII109452014	NonProperStrand	1	1	-inf
chr9	17987814	17987835	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	13	chr5	97103632	97103650	protein_coding	Fras1	intron	ENSMUSG00000034687	NonProperStrand	5	1	-15.1907
chr11	12407442	12407542	LTR	IAPLTR1_Mm	ERVK	chr11IAPLTR1_Mm12407311	ProperStrand	1	chr9	123461996	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr13	90567889	90567979	LINE	L1_Mus1	L1	chr13L1_Mus190567715	NonProperStrand	1	chr13	118716977	118717057	protein_coding	Hcn1	intron	ENSMUSG00000021730	ProperStrand	8	1	-inf
chr15	89877389	89877479	LTR	MTA_Mm	MaLR	chr15MTA_Mm89877322	NonProperStrand	1	chr15	89877227	89877307	LTR	ORR1B1	MaLR	chr15ORR1B189877013	ProperStrand	1	1	-inf
chr19	44545120	44545210	LTR	MT2B	ERVL	chr19MT2B44544986	ProperStrand	1	chr19	44545508	44545588	SINE	B2_Mm2	B2	chr19B2_Mm244545397	NonProperStrand	1	1	-inf
chr5	148315311	148315327	protein_coding	Pan3	intron	ENSMUSG00000029647	ProperStrand	5	chr2	5379293	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-7.1918
chr6	3201509	3201569	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	20	chr1	66843642	66843718	protein_coding	1110028C15Rik	intron	ENSMUSG00000026004	NonProperStrand	3	1	-15.5051
chr9	84176363	84176443	SINE	B4A	B4	chr9B4A84176230	ProperStrand	1	chr9	84176525	84176615	Simple_repeat	(CATG)n	Simple_repeat	chr9(CATG)n84176540	ProperStrand	1	1	-inf
chr4	132352896	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr19	57910412	57910430	protein_coding	Atrnl1	intron	ENSMUSG00000054843	NonProperStrand	2	1	-12.1295
chr3	142688297	142688315	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr2	32963383	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-4.8504
chr15	40537009	40537099	protein_coding	Zfpm2	intron	ENSMUSG00000022306	ProperStrand	5	chr15	41584428	41584508	protein_coding	Oxr1	intron	ENSMUSG00000022307	ProperStrand	2	1	-19.4797
chr19	10629406	10629485	protein_coding-noncoding	Tmem216	utr3	ENSMUSG00000024667	NonProperStrand	1	chr16	23110913	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr1	167650437	167650527	LINE	L1M3	L1	chr1L1M3167650362	ProperStrand	1	chr1	167650223	167650303	SINE	RSINE1	B4	chr1RSINE1167650186	NonProperStrand	1	1	-inf
chr11	115472717	115472734	protein_coding	Mif4gd	intron	ENSMUSG00000020743	ProperStrand	2	chr13	97190552	97190611	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-9.9068
chr17	39846684	39846815	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	131159616	131159634	LTR	MTEa-int	MaLR	chr4MTEa-int131159502	NonProperStrand	1	1	-inf
chr7	47186410	47186520	SINE	PB1D10	Alu	chr7PB1D1047186421	NonProperStrand	5	chr14	33967663	33967776	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	2	-22.2769
chr11	109011785	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	100727931	100727995	protein_coding	Stat5a	intron	ENSMUSG00000004043	NonProperStrand	2	1	-7.3577
chr11	93582381	93582400	Simple_repeat	(GA)n	Simple_repeat	chr11(GA)n93582360	NonProperStrand	1	chr9	71112269	71112286	protein_coding	Aldh1a2	intron	ENSMUSG00000013584	ProperStrand	3	1	-inf
chr10	8345349	8345429	LTR	RLTR30	ERV1	chr10RLTR308344993	NonProperStrand	1	chr10	8345756	8345846	SINE	B4A	B4	chr10B4A8345710	ProperStrand	1	1	-inf
chrX	18043090	18043180	LINE	Lx8	L1	chrXLx818042705	NonProperStrand	1	chr10	122565903	122565983	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	1	-inf
chr12	6530493	6530583	LINE	L1Md_T	L1	chr12L1Md_T6530486	ProperStrand	1	chr12	6530346	6530426	LTR	IAPLTR1_Mm	ERVK	chr12IAPLTR1_Mm6530118	ProperStrand	1	1	-inf
chr3	37481428	37481455	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	7	chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	1	-13.1025
chr2	149623003	149623093	lincRNA	Gm14133	intron	ENSMUSG00000087029	ProperStrand	1	chr12	67667738	67667818	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr10	23785346	23785465	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr4	132309466	132310068	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	8	-4.9267
chr2	53631370	53631450	LINE	L1Md_F2	L1	chr2L1Md_F253629852	NonProperStrand	1	chr2	53631542	53631632	LINE	L1Md_F2	L1	chr2L1Md_F253631497	NonProperStrand	1	1	-inf
chr10	128677813	128677876	LINE	L1Md_A	L1	chr10L1Md_A128677774	NonProperStrand	1	chrX	37082911	37082929	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	1	-inf
chr4	149649246	149649262	SINE	B1_Mur1	Alu	chr4B1_Mur1149649186	ProperStrand	1	chr17	34952237	34952266	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-inf
chr17	39847512	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr13	49684298	49684433	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	4	-3.6618
chr4	14048512	14048592	LINE	Lx7	L1	chr4Lx714047700	NonProperStrand	1	chr1	8688483	8688573	protein_coding	Sntg1	intron	ENSMUSG00000025909	ProperStrand	9	1	-inf
chr5	129171082	129171162	SINE	B3	B2	chr5B3129171018	NonProperStrand	1	chr5	129170886	129170976	Simple_repeat	(TATG)n	Simple_repeat	chr5(TATG)n129170911	NonProperStrand	1	1	-inf
chr13	112578189	112578290	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr3	145118688	145118746	protein_coding	Col24a1	intron	ENSMUSG00000028197	ProperStrand	2	1	-10.3222
chr7	81384611	81384634	SINE	RSINE1	B4	chr7RSINE181384503	NonProperStrand	1	chr4	132309548	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr7	38054823	38054913	LINE	Lx9	L1	chr7Lx938054205	NonProperStrand	1	chr7	38055293	38055373	LTR	MURVY-LTR	ERV1	chr7MURVY-LTR38055138	NonProperStrand	1	1	-inf
chr2	32963368	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr19	5493760	5493778	protein_coding	Cfl1	utr3	ENSMUSG00000056201	ProperStrand	2	1	-11.2136
chrX	87238359	87238391	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr3	88326566	88326595	SINE	B1_Mur2	Alu	chr3B1_Mur288326541	NonProperStrand	1	1	-inf
chr15	77766809	77767164	SINE	RSINE1	B4	chr15RSINE177766716	NonProperStrand	1	chr15	77775096	77775155	protein_coding	Foxred2	intron	ENSMUSG00000016552	ProperStrand	7	1	-inf
chr6	30747757	30747838	protein_coding	Copg2	intron	ENSMUSG00000025607	NonProperStrand	1	chr1	165869841	165869931	protein_coding	Scyl3	intron	ENSMUSG00000026584	NonProperStrand	1	1	-inf
chr16	38158007	38158087	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	chr5	107905201	107905250	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-7.1920
chr11	120816105	120816185	protein_coding	Slc16a3	intron	ENSMUSG00000025161	NonProperStrand	4	chr2	5379252	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-7.6968
chr11	109011749	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	58703607	58703623	SINE	B1_Mus1	Alu	chr10B1_Mus158703582	NonProperStrand	1	1	-inf
chr9	16342815	16342905	LTR	LTR16A1	ERVL	chr9LTR16A116342828	ProperStrand	1	chr9	16342673	16342753	SINE	ID_B1	B4	chr9ID_B116342680	NonProperStrand	1	1	-inf
chr3	123507935	123507964	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr6	29356470	29356491	protein_coding	Ccdc136	intron	ENSMUSG00000029769	ProperStrand	2	1	-9.9469
chr17	39847519	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	70844807	70844825	protein_coding	Eif2ak3	intron	ENSMUSG00000031668	NonProperStrand	2	1	-6.4812
chr15	80078528	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr18	35554535	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	2	-7.9538
chr2	73782158	73782238	LINE	Lx7	L1	chr2Lx773782103	ProperStrand	1	chr2	73781916	73782006	LTR	ORR1B2	MaLR	chr2ORR1B273781817	ProperStrand	1	1	-inf
chr2	69537983	69538001	protein_coding	Fastkd1	intron	ENSMUSG00000027086	NonProperStrand	1	chr5	92056115	92056154	pseudogene	Gm15710	.	ENSMUSG00000084111	ProperStrand	17	1	-inf
chr15	34440833	34440922	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr18	10562191	10562208	protein_coding	Greb1l	utr3	ENSMUSG00000042942	NonProperStrand	2	1	-11.8921
chr13	109102196	109102286	LINE	Lx2B	L1	chr13Lx2B109102077	NonProperStrand	1	chr13	109101746	109101826	LTR	ORR1A2	MaLR	chr13ORR1A2109101731	ProperStrand	1	1	-inf
chr11	6528089	6528156	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr4	137556689	137557184	protein_coding	Eif4g3	intron	ENSMUSG00000028760	ProperStrand	13	1	-8.8045
chr7	34133219	34133235	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int34132715	ProperStrand	2	chr4	132310239	132310371	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-9.7441
chrX	123103877	123103894	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	8	chr2	5379279	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-6.1796
chr18	13868040	13868061	protein_coding	Zfp521	intron	ENSMUSG00000024420	NonProperStrand	8	chr2	90395148	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-5.6660
chr17	39847581	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	119102643	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	7	2	-6.2856
chr1	96752148	96752238	LINE	L1Md_T	L1	chr1L1Md_T96749855	ProperStrand	1	chr6	69371023	69371103	LINE	L1Md_A	L1	chr6L1Md_A69368108	ProperStrand	1	1	-inf
chr11	97781651	97781759	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr19	8888596	8888675	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	3	-5.6122
chr13	54190150	54190167	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	chr7	109520227	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-3.6590
chr11	6528051	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr16	96127603	96127620	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	NonProperStrand	2	1	-13.1511
chr2	91103098	91103188	protein_coding-noncoding	Pacsin3	utr5	ENSMUSG00000027257	ProperStrand	2	chr2	91102947	91103027	protein_coding	Pacsin3	exon	ENSMUSG00000027257	ProperStrand	2	2	-inf
chr12	76766351	76766393	protein_coding	Wdr89	intron	ENSMUSG00000045690	NonProperStrand	2	chr2	130172929	130172974	protein_coding	Ebf4	intron	ENSMUSG00000053552	NonProperStrand	13	1	-17.4871
chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-11.1187
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	11783128	11785397	protein_coding	Gm97	intron	ENSMUSG00000055933	NonProperStrand	3	1	-6.2761
chr2	125732064	125732082	protein_coding	Galk2	intron	ENSMUSG00000027207	ProperStrand	1	chr5	122491695	122491712	protein_coding	Cux2	intron	ENSMUSG00000042589	ProperStrand	5	1	-inf
chr17	39848412	39848468	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	chr8	25025752	25025769	protein_coding	Zmat4	intron	ENSMUSG00000037492	NonProperStrand	6	1	-12.8131
chr12	15522036	15522126	LINE	Lx4A	L1	chr12Lx4A15520748	ProperStrand	1	chr12	15522313	15522394	LINE	Lx4A	L1	chr12Lx4A15522200	ProperStrand	1	1	-inf
chr1	89545235	89545254	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	6	chr16	23110852	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.9943
chr3	38991723	38991813	LTR	ORR1A2	MaLR	chr3ORR1A238991670	ProperStrand	1	chr3	38991517	38991597	LTR	RLTR12B	ERVK	chr3RLTR12B38991293	ProperStrand	1	1	-inf
chr18	66220386	66220476	protein_coding-noncoding	Ccbe1	utr3	ENSMUSG00000046318	ProperStrand	1	chr18	66220637	66220717	protein_coding	Ccbe1	utr3	ENSMUSG00000046318	ProperStrand	6	1	-inf
mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr5	121205091	121205121	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-3.0351
chr3	15436906	15436996	LINE	Lx3B	L1	chr3Lx3B15436667	NonProperStrand	1	chr3	15437348	15437428	LTR	MLT-int	MaLR	chr3MLT-int15437356	NonProperStrand	1	1	-inf
chr17	39847181	39847231	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr11	116843218	116843234	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-3.3932
chr7	111070677	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-7.1015
chr17	39847506	39847526	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	55619798	55619816	protein_coding	Plcl1	intron	ENSMUSG00000038349	ProperStrand	6	1	-3.8783
chr17	39847860	39847878	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	5751477	5751499	protein_coding	Ltbp3	exon	ENSMUSG00000024940	ProperStrand	2	1	-6.4812
chr19	30155761	30155842	protein_coding-noncoding	Uhrf2	utr5	ENSMUSG00000024817	ProperStrand	1	chr19	30156119	30156209	protein_coding	Uhrf2	intron	ENSMUSG00000024817	ProperStrand	2	1	-inf
chr11	97781663	97781693	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr11	7214030	7214046	LINE	L1_Mus3	L1	chr11L1_Mus37208767	NonProperStrand	1	1	-inf
chr3	142688295	142688317	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr5	146261020	146261047	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-3.6362
chr4	123291354	123291435	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr17	24719675	24719740	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-4.8832
chr5	146261155	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	16286928	16286948	LTR	MuRRS-int	ERV1	chr7MuRRS-int16286206	NonProperStrand	1	1	-inf
chr11	97781662	97781698	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr13	49684298	49684345	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-5.8003
chr9	47889877	47889893	LINE	L1M2	L1	chr9L1M247889595	NonProperStrand	2	chr4	132309465	132309544	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-9.7441
chr17	39846456	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	32151208	32151281	protein_coding	Golga2	intron	ENSMUSG00000002546	ProperStrand	2	1	-7.0123
chr5	146260994	146261195	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	109520134	109521355	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	5	-3.1486
chr13	62918204	62918284	LTR	RLTR31B_Mm	ERVK	chr13RLTR31B_Mm62918136	ProperStrand	1	chr13	62918013	62918103	SINE	B2_Mm1t	B2	chr13B2_Mm1t62917962	ProperStrand	1	1	-inf
chr10	95113154	95113234	LTR	ORR1A4	MaLR	chr10ORR1A495113120	ProperStrand	1	chr18	40660542	40660632	protein_coding	Kctd16	intron	ENSMUSG00000051401	ProperStrand	6	1	-inf
chr13	62836667	62836757	LINE	Lx4B	L1	chr13Lx4B62836336	NonProperStrand	1	chr13	62836846	62836926	LTR	RMER12	ERVK	chr13RMER1262836795	NonProperStrand	1	1	-inf
chr11	109011748	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	97417105	97417121	LINE	Lx5	L1	chr7Lx597416854	NonProperStrand	1	1	-inf
chr1	90798142	90800038	LTR	MTD	MaLR	chr1MTD90798026	ProperStrand	1	chr2	5379285	5379336	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr17	39846594	39846641	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	28329043	28329458	protein_coding	Zfp523	intron	ENSMUSG00000024220	ProperStrand	3	1	-5.9338
chr4	38474876	38474956	LINE	L1_Mur1	L1	chr4L1_Mur138474664	NonProperStrand	1	chr4	38474551	38474641	LINE	Lx3A	L1	chr4Lx3A38472986	ProperStrand	1	1	-inf
chr10	108363706	108363767	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	chr8	70895810	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-6.3171
chr16	72641244	72641334	SINE	B1F	Alu	chr16B1F72641186	ProperStrand	1	chr16	72640922	72641002	SINE	B1_Mur4	Alu	chr16B1_Mur472640934	ProperStrand	1	1	-inf
chr17	61597907	61597987	LINE	Lx3_Mus	L1	chr17Lx3_Mus61597885	ProperStrand	1	chr17	61598011	61598101	LINE	Lx3_Mus	L1	chr17Lx3_Mus61598020	ProperStrand	1	1	-inf
chr16	28859618	28859718	protein_coding	1600021P15Rik	intron	ENSMUSG00000051065	ProperStrand	3	chr4	95881070	95881128	protein_coding	Cyp2j7-ps	intron	ENSMUSG00000081362	NonProperStrand	1	1	-inf
chr5	124371177	124371193	protein_coding	Denr	intron	ENSMUSG00000023106	ProperStrand	1	chr2	41344452	41344469	protein_coding	Lrp1b	intron	ENSMUSG00000049252	ProperStrand	18	1	-inf
chr17	39848146	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr13	51648211	51648292	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	1	-5.5650
chr17	39848097	39848190	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr13	95330640	95330683	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	2	-4.3454
chr19	8723994	8724013	LINE	L1M5	L1	chr19L1M58723667	ProperStrand	22	chr2	22744890	22744911	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	1	-9.0066
chr6	28888241	28888331	LINE	L1MC4	L1	chr6L1MC428888263	ProperStrand	2	chr6	28888143	28888223	Simple_repeat	(GA)n	Simple_repeat	chr6(GA)n28888147	ProperStrand	1	1	-inf
chr2	167314730	167314820	protein_coding-noncoding	Spata2	utr3	ENSMUSG00000047030	NonProperStrand	1	chr2	167314469	167314549	protein_coding	Spata2	intron	ENSMUSG00000047030	NonProperStrand	1	1	-inf
chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	chr2	158359793	158359912	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	2	-7.6324
chr9	52465015	52465105	LINE	L1MEb	L1	chr9L1MEb52465026	ProperStrand	1	chr9	52465168	52465248	LTR	ORR1D2	MaLR	chr9ORR1D252465176	NonProperStrand	1	1	-inf
chr16	93983145	93983225	protein_coding	Cldn14	intron	ENSMUSG00000047109	NonProperStrand	2	chr16	94200217	94200307	protein_coding	Sim2	intron	ENSMUSG00000062713	ProperStrand	12	1	-17.6470
chr16	20541294	20541336	protein_coding	Ap2m1	exon	ENSMUSG00000022841	ProperStrand	2	chr16	23110913	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-8.6674
chr18	33795186	33795209	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr11	69669698	69669781	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-5.2162
chr3	86547274	86547290	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	14	chr5	114851994	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-6.3433
chr10	105238437	105238523	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	chr13	44869579	44869712	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	3	-8.5335
chr1	121277746	121277826	LTR	MTE2b	MaLR	chr1MTE2b121277515	NonProperStrand	1	chr1	121278125	121278215	SINE	B3A	B2	chr1B3A121278144	ProperStrand	1	1	-inf
chr11	6528032	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr4	132352956	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-3.5952
chr10	23785346	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr9	110281288	110281367	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	2	-4.5754
chr9	26145344	26145363	LINE	L1_Mus2	L1	chr9L1_Mus226143524	NonProperStrand	1	chr17	39846660	39846684	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-inf
chr2	144331307	144331323	protein_coding	6330439K17Rik	intron	ENSMUSG00000037259	ProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr6	6113281	6113300	protein_coding	Slc25a13	intron	ENSMUSG00000015112	NonProperStrand	6	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-10.8719
chr5	10288022	10288112	LINE	L1_Mur2	L1	chr5L1_Mur210287664	NonProperStrand	1	chr5	10288162	10288242	LTR	RMER12	ERVK	chr5RMER1210288151	NonProperStrand	1	1	-inf
chr10	16305725	16305815	LINE	L1M5	L1	chr10L1M516305668	NonProperStrand	1	chr10	17035179	17035259	LINE	L1_Mur2	L1	chr10L1_Mur217034583	NonProperStrand	1	1	-inf
chr5	146260996	146261216	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr17	50420128	50420163	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	2	-7.5152
chr4	102977384	102983935	lincRNA	4930456L15Rik	intron	ENSMUSG00000078618	NonProperStrand	1	chr2	130276282	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-inf
chr1	132319078	132319158	protein_coding-noncoding	Daf2	utr3	ENSMUSG00000026401	NonProperStrand	1	chr1	132319365	132319455	protein_coding	Daf2	intron	ENSMUSG00000026401	NonProperStrand	1	1	-inf
chr13	31455884	31455974	lincRNA	Gm11376	intron	ENSMUSG00000087140	ProperStrand	6	chr7	103550498	103550578	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	16	2	-22.8537
chr17	39847652	39847702	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr14	48303016	48303032	protein_coding	Ktn1	intron	ENSMUSG00000021843	NonProperStrand	1	1	-inf
mmu-miR-6240	3	23	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr14	61366986	61367011	protein_coding	Spata13	intron	ENSMUSG00000021990	NonProperStrand	3	1	-12.5481
chr5	146261285	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr17	66119070	66119086	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	6	1	-10.4106
chr7	76229514	76229594	LINE	Lx5	L1	chr7Lx576229063	NonProperStrand	1	chr7	76229666	76229756	LINE	Lx5	L1	chr7Lx576229517	NonProperStrand	1	1	-inf
chr18	6910118	6910198	DNA	MER58B	MER1_type	chr18MER58B6910074	ProperStrand	1	chr18	6909817	6909907	DNA	MER63C	AcHobo	chr18MER63C6909830	ProperStrand	1	1	-inf
chr4	107362125	107362215	LTR	RMER6A	ERVK	chr4RMER6A107361610	NonProperStrand	1	chr4	107362578	107362658	lincRNA	1700047F07Rik	intron	ENSMUSG00000085549	NonProperStrand	1	1	-inf
chr17	39847107	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr14	55540459	55540475	protein_coding	Efs	intron	ENSMUSG00000022203	ProperStrand	8	2	-9.0178
chr15	34440790	34440882	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr2	90395135	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	8	-7.3377
chr17	39846724	39846754	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	135994398	135998681	protein_coding	Pak7	intron	ENSMUSG00000039913	ProperStrand	7	1	-4.0682
chr2	168601391	168601416	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr9	123462112	123462158	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-3.2086
chr17	39847515	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	32216227	32216653	protein_coding	Ciz1	intron	ENSMUSG00000039205	ProperStrand	1	1	-inf
chrX	60304241	60304262	LINE	L1_Mur3	L1	chrXL1_Mur360304181	NonProperStrand	1	chr16	23110824	23110880	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr9	123461802	123462171	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr2	122123773	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	14	-4.6272
chr18	57357142	57357160	protein_coding	Megf10	intron	ENSMUSG00000024593	ProperStrand	6	chr7	109520225	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-8.0721
chr17	23818853	23818872	protein_coding	Cldn6	utr3	ENSMUSG00000023906	NonProperStrand	5	chr9	119102643	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	7	1	-16.5030
chr1	180256227	180256245	protein_coding	Hnrnpu	intron	ENSMUSG00000039630	NonProperStrand	2	chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-13.5769
chr8	25401436	25401516	LINE	Lx8	L1	chr8Lx825401436	ProperStrand	1	chr8	25401634	25401724	LTR	MT2A	ERVL	chr8MT2A25401612	NonProperStrand	1	1	-inf
chr8	100725874	100725954	LINE	Lx8	L1	chr8Lx8100725820	NonProperStrand	1	chr8	100725693	100725783	LTR	RMER13A	ERVK	chr8RMER13A100725296	ProperStrand	1	1	-inf
chr4	132352442	132352528	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr9	110281286	110281348	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	2	-6.1492
chr17	39847618	39847688	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr13	45075518	45075537	protein_coding	Dtnbp1	intron	ENSMUSG00000057531	NonProperStrand	4	1	-4.7422
chr5	45315195	45315285	LINE	L1_Mur3	L1	chr5L1_Mur345315136	NonProperStrand	1	chr5	45315030	45315110	SINE	RSINE1	B4	chr5RSINE145315023	NonProperStrand	1	1	-inf
chr8	94825269	94826652	LINE	L1MB2	L1	chr8L1MB294825120	NonProperStrand	1	chr8	94823681	94825255	SINE	RSINE1	B4	chr8RSINE194823608	ProperStrand	1	1	-inf
chr14	80201405	80201495	LTR	ORR1B1-int	MaLR	chr14ORR1B1-int80201275	ProperStrand	1	chr14	80201132	80201212	LTR	ORR1B1	MaLR	chr14ORR1B180200892	ProperStrand	1	1	-inf
chr4	143253727	143253816	LINE	L1_Mus1	L1	chr4L1_Mus1143253698	NonProperStrand	1	chr4	143253446	143253526	pseudogene	Gm13085	.	ENSMUSG00000084351	NonProperStrand	1	1	-inf
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-3.9321
chr19	54711646	54711726	LINE	L1Md_F2	L1	chr19L1Md_F254711495	NonProperStrand	1	chr19	54711770	54711860	SINE	MIR	MIR	chr19MIR54711742	NonProperStrand	1	1	-inf
chr1	189337362	189337442	LTR	MTEa	MaLR	chr1MTEa189337161	ProperStrand	1	chr1	189336851	189336941	Low_complexity	GA-rich	Low_complexity	chr1GA-rich189336839	NonProperStrand	1	1	-inf
chr11	109011747	109011851	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	123507933	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	41	-21.8734
chr11	69667833	69669778	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	5	-3.9922
chr11	109011679	109011716	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	21007472	21007652	protein_coding	Pde4a	intron	ENSMUSG00000032177	ProperStrand	2	1	-7.3577
chr1	6097889	6097969	LTR	MTEa	MaLR	chr1MTEa6097760	NonProperStrand	1	chr1	6098157	6098247	SINE	RSINE1	B4	chr1RSINE16098156	ProperStrand	1	1	-inf
chr8	70772656	70772736	DNA	URR1A	MER1_type	chr8URR1A70772625	NonProperStrand	1	chr8	70772822	70772912	LTR	ORR1B1	MaLR	chr8ORR1B170772845	ProperStrand	1	1	-inf
chr5	62121836	62121854	LINE	L1_Mur3	L1	chr5L1_Mur362121770	NonProperStrand	3	chr3	116489183	116489199	protein_coding	Agl	intron	ENSMUSG00000033400	ProperStrand	7	1	-17.7120
chr7	12996436	12996526	LINE	Lx8	L1	chr7Lx812996312	ProperStrand	1	chr7	12996114	12996194	SINE	B3	B2	chr7B312996101	NonProperStrand	1	1	-inf
chr4	139338113	139338145	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	5	chr9	110281293	110281348	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-11.4909
chr17	39846648	39846819	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	39843909	39844028	LTR	MTB_Mm	MaLR	chr17MTB_Mm39843931	NonProperStrand	24	2	-3.3762
chr1	63179007	63179080	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	chr13	44869606	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-4.5345
chr1	90930860	90930950	DNA	Zaphod	Tip100	chr1Zaphod90930657	ProperStrand	1	chr1	90931139	90931219	DNA	Zaphod	Tip100	chr1Zaphod90931112	ProperStrand	1	1	-inf
chr9	120130421	120130439	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr15	80078501	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	1	-5.1075
chr13	97190544	97190602	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr16	23111696	23111744	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	1	-4.2352
chr10	20662817	20662907	DNA	MMAR1	Mariner	chr10MMAR120662740	NonProperStrand	1	chr10	20663190	20663270	DNA	MMAR1	Mariner	chr10MMAR120663149	NonProperStrand	1	1	-inf
chr5	91141053	91141069	SINE	ID_B1	B4	chr5ID_B191140990	NonProperStrand	1	chr18	35554532	35554587	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-inf
chr2	165414885	165414965	LTR	MLT1A1	MaLR	chr2MLT1A1165414848	ProperStrand	1	chr2	165414636	165414726	LTR	ORR1E	MaLR	chr2ORR1E165414491	ProperStrand	1	1	-inf
chr4	35406994	35407084	LINE	Lx5	L1	chr4Lx535405997	ProperStrand	1	chr10	67010951	67011031	protein_coding	Ado	exon	ENSMUSG00000057134	ProperStrand	5	1	-inf
chr17	50420127	50420161	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr4	132309581	132310040	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	2	-7.2537
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr5	122733310	122733327	Simple_repeat	(TTTC)n	Simple_repeat	chr5(TTTC)n122733304	NonProperStrand	1	1	-inf
chr17	39847082	39847138	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr9	21237590	21237676	protein_coding	Dnm2	intron	ENSMUSG00000033335	NonProperStrand	6	1	-5.9886
chr17	39846480	39846527	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr15	77796768	77796866	protein_coding	Eif3d	intron	ENSMUSG00000016554	ProperStrand	2	1	-7.0123
chr13	112578189	112578279	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-3.8543
chr11	106501256	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr8	12757418	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	2	-8.9264
chr2	39703180	39703270	LINE	L1Md_T	L1	chr2L1Md_T39703093	ProperStrand	1	chr2	39777980	39778060	LINE	Lx4A	L1	chr2Lx4A39777775	NonProperStrand	1	1	-inf
chr17	36186148	36186164	antisense	BC023719	.	ENSMUSG00000092365	NonProperStrand	2	chr16	11144046	11144200	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	2	-inf
chr5	146261279	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr2	122440335	122440352	Low_complexity	CT-rich	Low_complexity	chr2CT-rich122440261	ProperStrand	1	1	-inf
chr16	23110396	23110445	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr5	115986908	115987008	protein_coding	Pxn	intron	ENSMUSG00000029528	ProperStrand	2	1	-8.9865
chr6	85515989	85516079	LINE	Lx4A	L1	chr6Lx4A85515979	NonProperStrand	1	chr1	59665383	59665463	protein_coding	Gm973	intron	ENSMUSG00000047361	NonProperStrand	1	1	-inf
chr12	100725624	100725704	SINE	RSINE1	B4	chr12RSINE1100725547	ProperStrand	1	chr12	100725402	100725491	Simple_repeat	(TTTC)n	Simple_repeat	chr12(TTTC)n100725408	NonProperStrand	1	1	-inf
chrX	4899374	4899400	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr5	114851996	114852033	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-5.3474
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr5	17776752	17776776	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	1	-5.6880
chr15	52948572	52948589	protein_coding	Ext1	intron	ENSMUSG00000061731	NonProperStrand	4	chr3	95118672	95119160	protein_coding	Gm10691	utr5	ENSMUSG00000074414	NonProperStrand	1	1	-inf
chr17	39847181	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr12	87437681	87437787	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	4	-5.8745
chrX	72992111	72992132	lincRNA	4933407K13Rik	exon	ENSMUSG00000087396	NonProperStrand	7	chr2	5379294	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-6.4615
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr8	70895813	70895831	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-4.5791
chr3	78812440	78812520	LINE	Lx6	L1	chr3Lx678812321	NonProperStrand	1	chr3	78812867	78812957	LINE	Lx6	L1	chr3Lx678812815	NonProperStrand	1	1	-inf
chr10	91118486	91118533	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	chr4	132352437	132352955	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-5.7359
chr16	36772028	36772044	protein_coding	Slc15a2	utr3	ENSMUSG00000022899	ProperStrand	1	chr13	97190552	97190614	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr11	61162886	61163727	protein_coding	Slc47a1	intron	ENSMUSG00000010122	ProperStrand	3	chr7	109520167	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-9.6724
chr9	104339222	104339302	DNA	MER33	MER1_type	chr9MER33104339202	NonProperStrand	1	chr9	104338710	104338800	LINE	Lx8	L1	chr9Lx8104338151	ProperStrand	1	1	-inf
chr1	126375632	126375722	LINE	L1MA4	L1	chr1L1MA4126375545	ProperStrand	1	chr1	126375392	126375472	LINE	L1_Rod	L1	chr1L1_Rod126375392	NonProperStrand	1	1	-inf
chr9	123461984	123462033	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	134384495	134384569	protein_coding	Tmem57	intron	ENSMUSG00000028826	NonProperStrand	1	1	-inf
chr4	144159205	144159221	LINE	L1_Mur2	L1	chr4L1_Mur2144159088	ProperStrand	1	chr4	123295011	123295224	protein_coding	Macf1	intron	ENSMUSG00000028649	ProperStrand	7	1	-inf
chr10	9807880	9807970	LINE	L2a	L2	chr10L2a9807880	ProperStrand	1	chr10	9808317	9808397	LTR	MTD	MaLR	chr10MTD9808206	ProperStrand	1	1	-inf
chr13	106856691	106856771	LINE	L1_Mus3	L1	chr13L1_Mus3106856326	ProperStrand	1	chr13	106856962	106857052	LINE	L1_Mus3	L1	chr13L1_Mus3106856807	ProperStrand	1	1	-inf
chr1	133610063	133610143	DNA	Tigger7	MER2_type	chr1Tigger7133609934	NonProperStrand	1	chr1	133609905	133609995	protein_coding	5430435G22Rik	utr3	ENSMUSG00000052688	NonProperStrand	1	1	-inf
chr5	146261266	146261336	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr13	44869592	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	4	-6.8321
chr2	90395137	90395170	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr16	30308259	30308275	protein_coding	Gp5	exon	ENSMUSG00000047953	ProperStrand	4	1	-7.1761
chr2	173261570	173261651	DNA	MER113	MER1_type	chr2MER113173261531	NonProperStrand	1	chr2	173261673	173261763	LINE	L1M4	L1	chr2L1M4173261667	ProperStrand	1	1	-inf
chr4	94555767	94555785	LINE	L1_Mur3	L1	chr4L1_Mur394555762	ProperStrand	4	chr17	39847185	39847201	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-6.8874
chr7	109520124	109520249	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr19	8888590	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	5	-5.4096
chr6	3201427	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr8	109560657	109561302	protein_coding	Vps4a	intron	ENSMUSG00000031913	NonProperStrand	2	1	-13.3225
chr1	39548763	39548853	LINE	Lx5	L1	chr1Lx539548764	NonProperStrand	5	chr2	34020418	34020436	LTR	ORR1A3	MaLR	chr2ORR1A334020122	ProperStrand	3	1	-18.4526
chr2	90395137	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr3	89230481	89230497	protein_coding	Shc1	exon	ENSMUSG00000042626	ProperStrand	1	1	-inf
chr17	87797519	87797537	protein_coding	1700011E24Rik	intron	ENSMUSG00000036557	NonProperStrand	1	chr2	5379268	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr11	70446542	70446632	LINE	L1MDa	L1	chr11L1MDa70446419	NonProperStrand	1	chr11	70446817	70446897	SINE	B1_Mm	Alu	chr11B1_Mm70446776	ProperStrand	1	1	-inf
chr8	104231496	104231576	LINE	L1_Mus2	L1	chr8L1_Mus2104231185	ProperStrand	1	chr8	104231798	104231888	LINE	L1_Mus2	L1	chr8L1_Mus2104231573	NonProperStrand	1	1	-inf
chr11	89075068	89075084	LTR	LTR16C	ERVL	chr11LTR16C89074952	NonProperStrand	1	chr5	146261173	146261190	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-inf
chr1	181923619	181923636	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	ProperStrand	4	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-8.4601
chr17	39846411	39846439	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	57461884	57461901	protein_coding	Galnt10	intron	ENSMUSG00000020520	ProperStrand	4	1	-5.2608
chr1	124963177	124963257	LTR	RMER17C	ERVK	chr1RMER17C124963057	ProperStrand	1	chr7	103550738	103550828	protein_coding	Odz4	intron	ENSMUSG00000048078	ProperStrand	17	1	-inf
chr5	146261240	146261280	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr15	34440894	34440918	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-5.2501
chr17	24719680	24719801	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr8	70895762	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	2	-3.6968
chr7	88489608	88489688	protein_coding-noncoding	Rps17	utr3	ENSMUSG00000061787	ProperStrand	1	chr7	88489464	88489554	protein_coding	Rps17	intron	ENSMUSG00000061787	ProperStrand	1	1	-inf
chr5	146261134	146261207	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr6	115807978	115808114	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	3	-5.3121
chr18	46991994	46992074	LINE	Lx7	L1	chr18Lx746991395	ProperStrand	1	chr18	57633888	57633978	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	8	1	-inf
chr9	123461959	123461977	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr18	23041075	23041092	protein_coding	Nol4	intron	ENSMUSG00000041923	NonProperStrand	4	1	-6.4942
chr12	99645571	99645671	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr11	101125356	101126040	protein_coding	Wnk4	intron	ENSMUSG00000035112	NonProperStrand	1	1	-inf
chr1	119041380	119041470	LINE	L1MA8	L1	chr1L1MA8119041093	NonProperStrand	1	chr1	119041673	119041753	LINE	Lx	L1	chr1Lx119041671	NonProperStrand	1	1	-inf
chr19	12767992	12768012	LINE	L1_Mur1	L1	chr19L1_Mur112767715	NonProperStrand	1	chr9	20911820	20911887	protein_coding	Tyk2	intron	ENSMUSG00000032175	ProperStrand	1	1	-inf
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr8	119605136	119605153	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	11	2	-8.3929
chr11	109011747	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	38158113	38158137	snoRNA	ENSMUSG00000077530_SNORA17	.	ENSMUSG00000077530	ProperStrand	5	1	-5.1059
chr3	20283842	20283922	LINE	L1Md_F	L1	chr3L1Md_F20282211	NonProperStrand	1	chr3	20284173	20284263	LINE	L1_Mm	L1	chr3L1_Mm20284016	NonProperStrand	1	1	-inf
chr10	16175687	16175777	LINE	L1MD2	L1	chr10L1MD216175190	NonProperStrand	1	chr10	16175868	16175948	LINE	L1_Mus1	L1	chr10L1_Mus116175843	NonProperStrand	1	1	-inf
chr10	9852075	9852137	LTR	MTD	MaLR	chr10MTD9852057	ProperStrand	4	chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	1	-11.2034
chr15	62143614	62143694	lincRNA	Pvt1	intron	ENSMUSG00000072566	NonProperStrand	8	chr15	62054857	62054947	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	8	1	-15.1857
chr17	31848063	31848143	SINE	B4A	B4	chr17B4A31848021	ProperStrand	1	chr17	31847942	31848032	Simple_repeat	(TG)n	Simple_repeat	chr17(TG)n31847899	NonProperStrand	1	1	-inf
chr3	123507995	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr1	74784232	74784306	protein_coding	Cyp27a1	utr3	ENSMUSG00000026170	ProperStrand	1	1	-inf
chr5	67897573	67897653	LTR	MLT1E	MaLR	chr5MLT1E67897477	NonProperStrand	1	chr5	67167617	67167707	protein_coding	Limch1	intron	ENSMUSG00000037736	ProperStrand	3	1	-inf
chr7	139063951	139063971	protein_coding	Fgfr2	intron	ENSMUSG00000030849	ProperStrand	33	chr2	5379280	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-3.3868
chr17	35162588	35162655	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr2	122123775	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-3.8812
chr12	99167143	99167223	LINE	L1MC1	L1	chr12L1MC199167137	NonProperStrand	1	chr12	99167534	99167624	LINE	L1MD3	L1	chr12L1MD399167465	NonProperStrand	1	1	-inf
chr13	62641151	62641241	LINE	L1_Mur1	L1	chr13L1_Mur162640912	ProperStrand	1	chr13	62454741	62454821	Unknown	MurSatRep1	Unknown	chr13MurSatRep162454060	NonProperStrand	1	1	-inf
chr14	75847987	75848034	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr16	91729454	91729478	protein_coding	Atp5o	intron	ENSMUSG00000022956	NonProperStrand	5	1	-10.7448
chr4	69190791	69190871	SINE	B3A	B2	chr4B3A69190717	NonProperStrand	1	chr4	69191019	69191109	SINE	B4	B4	chr4B469190920	NonProperStrand	1	1	-inf
chr5	88581826	88581846	LINE	L1Md_A	L1	chr5L1Md_A88574957	ProperStrand	1	chr17	39847440	39847470	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr1	100180181	100180213	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	6	chr11	69063039	69063070	SINE	B1_Mus1	Alu	chr11B1_Mus169063021	NonProperStrand	1	1	-inf
chr11	109011745	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	109520119	109521399	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	17	-5.2385
chr11	69669691	69669735	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr7	108612938	108612955	protein_coding	Pde2a	intron	ENSMUSG00000030653	NonProperStrand	1	1	-inf
chr8	121476361	121476382	protein_coding	Cdh13	intron	ENSMUSG00000031841	NonProperStrand	32	chr13	44869952	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-3.9017
chr9	12029392	12029482	LTR	MER110	ERV1	chr9MER11012029406	ProperStrand	1	chr9	12029261	12029341	LTR	MTD	MaLR	chr9MTD12029092	ProperStrand	1	1	-inf
chr3	87759523	87759603	SINE	PB1D7	Alu	chr3PB1D787759483	ProperStrand	1	chr3	87759843	87759935	SINE	RSINE1	B4	chr3RSINE187759789	ProperStrand	1	1	-inf
chr11	109011745	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	111070678	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	4	-6.0852
chr11	82883952	82889769	LTR	MERVL-int	ERVL	chr11MERVL-int82884996	ProperStrand	2	chr11	82889785	82890024	LTR	MERVL-int	ERVL	chr11MERVL-int82885110	ProperStrand	2	2	-inf
chr14	75847942	75848038	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr17	39847160	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	4	-3.9641
chr17	39843818	39843834	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	ProperStrand	12	chr5	146261171	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-5.7818
chr17	39846411	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	96411552	96411614	pseudogene	6330549D23Rik	.	ENSMUSG00000045327	ProperStrand	2	1	-7.0123
chr11	94936406	94936441	protein_coding	Itga3	intron	ENSMUSG00000001507	NonProperStrand	6	chr1	181923619	181923636	protein_coding	Cdc42bpa	intron	ENSMUSG00000026490	ProperStrand	4	1	-17.3471
chr14	30052434	30052514	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	NonProperStrand	10	chr14	30033855	30033945	protein_coding	Cacna2d3	intron	ENSMUSG00000021991	ProperStrand	16	1	-13.2565
chr14	75847919	75848019	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr7	109520134	109520249	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	2	-4.0952
chr16	35981616	35981653	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr13	44869596	44869698	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	6	-12.1921
chr2	144174168	144174248	LINE	L1_Mus4	L1	chr2L1_Mus4144174117	ProperStrand	1	chr2	144174414	144174504	SINE	B3A	B2	chr2B3A144174382	NonProperStrand	1	1	-inf
chr9	19657679	19657863	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	chr8	13416917	13417205	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	5	2	-21.8815
chr1	138990798	138990878	LINE	Lx8	L1	chr1Lx8138990636	NonProperStrand	1	chr1	138990923	138991013	LINE	Lx8	L1	chr1Lx8138990636	ProperStrand	1	1	-inf
chr11	106501274	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr16	56035807	56035853	protein_coding	Rg9mtd1	intron	ENSMUSG00000044763	ProperStrand	9	1	-8.4097
chr3	155709161	155709251	LINE	Lx4A	L1	chr3Lx4A155709034	ProperStrand	1	chr3	155708781	155708861	LTR	MTA_Mm	MaLR	chr3MTA_Mm155708628	NonProperStrand	1	1	-inf
chr17	39846782	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	24528473	24528519	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	10	1	-3.3657
chr1	150821073	150821153	LINE	L1_Rod	L1	chr1L1_Rod150820850	NonProperStrand	1	chr1	150821332	150821422	LINE	L1_Rod	L1	chr1L1_Rod150821178	NonProperStrand	1	1	-inf
chrX	105121099	105121169	LTR	MT2A	ERVL	chrXMT2A105120960	NonProperStrand	1	chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	16	1	-inf
chr13	95330598	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	3	-3.4312
chr4	149616730	149616820	protein_coding-noncoding	Eno1	utr5	ENSMUSG00000063524	ProperStrand	2	chr4	149614120	149614200	protein_coding	Eno1	intron	ENSMUSG00000063524	ProperStrand	2	2	-inf
chr13	97190541	97190629	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr16	23110829	23110936	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	13	-4.1138
chrX	17934446	17934536	LINE	Lx9	L1	chrXLx917934305	ProperStrand	1	chrX	17934242	17934322	LTR	ORR1A2	MaLR	chrXORR1A217933979	NonProperStrand	1	1	-inf
chrX	87238364	87238402	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr2	130276233	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-3.2544
chr7	109520200	109520229	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr13	12589611	12589640	protein_coding	Edaradd	intron	ENSMUSG00000039309	NonProperStrand	1	1	-inf
chrX	87238359	87238423	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr17	39847438	39848007	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	14	-12.6274
chr2	93421851	93421867	LTR	MTE2a	MaLR	chr2MTE2a93421498	ProperStrand	2	chr19	8888592	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr5	36222552	36222570	protein_coding	Ablim2	intron	ENSMUSG00000029095	ProperStrand	2	chr16	23110851	23110873	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-8.6674
chr15	22059701	22059781	LINE	L1Md_F2	L1	chr15L1Md_F222059691	ProperStrand	1	chr15	22059511	22059601	LTR	RMER19C	ERVK	chr15RMER19C22059067	NonProperStrand	1	1	-inf
chr12	87249459	87250490	protein_coding	Ttll5	intron	ENSMUSG00000012609	NonProperStrand	5	chr5	107907342	107907444	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-10.2163
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	69440941	69440960	SINE	B2_Mm2	B2	chr3B2_Mm269440813	NonProperStrand	1	1	-inf
chr12	71845235	71845315	SINE	ID4_	ID	chr12ID4_71845239	NonProperStrand	1	chr12	71845369	71845459	SINE	ID_B1	B4	chr12ID_B171845366	NonProperStrand	1	1	-inf
chr5	21376998	21377079	LINE	L1Md_F2	L1	chr5L1Md_F221375138	NonProperStrand	1	chr5	21620000	21620090	protein_coding	Reln	intron	ENSMUSG00000042453	NonProperStrand	8	1	-inf
chr11	109011789	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr16	23111314	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	NonProperStrand	2	1	-17.4836
chr10	124896996	124897086	LINE	L1Md_F2	L1	chr10L1Md_F2124893275	NonProperStrand	1	chr10	124897191	124897271	LINE	L1Md_F2	L1	chr10L1Md_F2124897018	NonProperStrand	2	1	-inf
chr7	92835682	92835772	LINE	L1Md_F2	L1	chr7L1Md_F292834786	NonProperStrand	1	chr7	92835961	92836041	LTR	ETnERV2-int	ERVK	chr7ETnERV2-int92835940	ProperStrand	1	1	-inf
chr3	142688296	142688317	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr11	66005142	66005158	lincRNA	Gm12296	intron	ENSMUSG00000084967	NonProperStrand	1	1	-inf
chr11	109011748	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	76105151	76105992	protein_coding	Kcnh5	intron	ENSMUSG00000034402	NonProperStrand	5	2	-8.7729
chr7	111070678	111070694	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-3.8804
chr1	71638578	71640320	protein_coding	Fn1	intron	ENSMUSG00000026193	ProperStrand	17	chr16	23110864	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.8853
chr8	84707795	84707898	LINE	L1M2	L1	chr8L1M284707467	ProperStrand	1	chr8	84706571	84706611	LINE	Lx	L1	chr8Lx84705777	ProperStrand	1	1	-inf
chr16	89788589	89788605	protein_coding	Tiam1	utr3	ENSMUSG00000002489	NonProperStrand	6	chr10	79044544	79044611	protein_coding	Theg	intron	ENSMUSG00000020317	NonProperStrand	1	1	-inf
chr9	123028565	123028655	protein_coding-noncoding	Exosc7	utr5	ENSMUSG00000025785	ProperStrand	1	chr9	123028332	123028412	protein_coding	Exosc7	intron	ENSMUSG00000025785	ProperStrand	2	1	-inf
chr17	50420135	50420173	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr2	5379277	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-4.0652
chr17	34950982	34951004	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr13	112578231	112578306	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-3.3210
chr7	109521279	109521355	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr4	135322471	135322489	protein_coding	Myom3	intron	ENSMUSG00000037139	ProperStrand	1	1	-inf
chr17	39846752	39846822	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr9	122414403	122414421	SINE	B3A	B2	chr9B3A122414395	NonProperStrand	1	1	-inf
chr4	132352442	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr1	63179007	63179080	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	1	-6.0305
chr4	154012113	154012133	lincRNA	Gm13111	intron	ENSMUSG00000085069	NonProperStrand	1	chr7	109521302	109521359	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-inf
chr4	117645239	117645274	protein_coding	St3gal3	intron	ENSMUSG00000028538	NonProperStrand	6	chr17	24720821	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-8.3310
chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	chr16	23111700	23111741	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	1	-11.8784
chr6	55464376	55464456	LTR	MT2B2	ERVL	chr6MT2B255464335	ProperStrand	1	chr6	55464176	55464266	LTR	ORR1D1	MaLR	chr6ORR1D155464163	NonProperStrand	1	1	-inf
chr8	61520952	61521042	LTR	RLTR31_Mm	ERVK	chr8RLTR31_Mm61520734	ProperStrand	1	chr8	61521135	61521215	LTR	RMER3D-int	ERVK	chr8RMER3D-int61521072	ProperStrand	1	1	-inf
chr15	76724594	76724610	SINE	B1_Mur3	Alu	chr15B1_Mur376724502	NonProperStrand	1	chr9	123461882	123461965	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr11	109011747	109011770	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	mmu-miR-2137	0	21	miRNA	mmu-miR-2137	.	mmu-miR-2137	ProperStrand	5	1	-5.1059
chr14	19278174	19278202	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	4	chr17	24719681	24719757	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-10.5240
chr12	28052930	28053010	LTR	MTC-int	MaLR	chr12MTC-int28051976	ProperStrand	1	chr12	28053094	28053184	SINE	B3	B2	chr12B328053046	NonProperStrand	1	1	-inf
chr17	39847477	39847530	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	28186800	28186816	protein_coding	Spnb4	intron	ENSMUSG00000011751	NonProperStrand	4	1	-4.7422
chr5	146261266	146261286	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr16	35981617	35981634	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-6.7260
chr17	34952012	34952040	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr5	121205007	121205088	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-3.9594
chr14	75847904	75847928	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	mmu-miR-1291	9	25	miRNA	mmu-miR-1291	.	mmu-miR-1291	ProperStrand	12	1	-8.8645
chr16	55331155	55331235	LINE	L1Md_F2	L1	chr16L1Md_F255331174	ProperStrand	1	chr16	55330870	55330960	LINE	L1Md_T	L1	chr16L1Md_T55330894	NonProperStrand	1	1	-inf
chr18	10052130	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr1	161037408	161037436	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	4	1	-13.0730
chr11	109011754	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	4214462	4214485	protein_coding	Clcf1	utr5	ENSMUSG00000040663	NonProperStrand	1	1	-inf
chr18	57210229	57210319	DNA	MER81	AcHobo	chr18MER8157210255	NonProperStrand	1	chr18	57210514	57210594	LTR	RMER17C	ERVK	chr18RMER17C57210385	ProperStrand	1	1	-inf
chr12	99645574	99645654	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr5	146261122	146261211	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-3.2662
chrX	23220320	23220337	LINE	L1_Mm	L1	chrXL1_Mm23219722	NonProperStrand	1	chr19	4964710	4964791	protein_coding	Mrpl11	utr3	ENSMUSG00000024902	ProperStrand	1	1	-inf
chr3	38702396	38702486	LTR	IAPEY2_LTR	ERVK	chr3IAPEY2_LTR38702274	NonProperStrand	1	chr3	38702622	38702702	LTR	RLTR41	ERV1	chr3RLTR4138702610	ProperStrand	1	1	-inf
chr17	39846760	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr8	111033992	111034008	LTR	MTD	MaLR	chr8MTD111033940	NonProperStrand	1	1	-inf
chr7	111070680	111070696	protein_coding	Olfr631	intron	ENSMUSG00000042219	ProperStrand	37	chr10	117221130	117221148	protein_coding	Nup107	intron	ENSMUSG00000052798	NonProperStrand	3	1	-14.2500
chr15	80078551	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr12	70685798	70685818	protein_coding	Sos2	utr3	ENSMUSG00000034801	NonProperStrand	4	1	-12.7194
chr9	68114240	68114330	LINE	L4	RTE	chr9L468114193	ProperStrand	1	chr9	68113875	68113955	LTR	MTEa	MaLR	chr9MTEa68113682	NonProperStrand	1	1	-inf
chr4	43492810	43492852	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr8	13876096	13876176	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-7.2080
chr3	123507988	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr16	23110755	23111636	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	4	-5.5328
chr7	4740128	4740152	protein_coding	2210411K11Rik	intron	ENSMUSG00000030431	ProperStrand	6	chr17	24720771	24720861	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-8.3310
chr11	120346384	120346474	protein_coding-noncoding	Mrpl12	utr5	ENSMUSG00000039640	NonProperStrand	2	chr11	120346757	120346929	protein_coding	Mrpl12	intron	ENSMUSG00000039640	NonProperStrand	3	1	-20.8207
chr8	107588348	107588365	LTR	RMER16-int	ERVK	chr8RMER16-int107586231	NonProperStrand	1	chr2	130276271	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-inf
chr2	168601397	168601415	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr13	112578651	112578670	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-5.1437
chr11	118018801	118018914	protein_coding	Cyth1	intron	ENSMUSG00000017132	NonProperStrand	2	chr9	34661921	34661941	protein_coding	Kirrel3	intron	ENSMUSG00000032036	NonProperStrand	6	1	-19.1217
chr5	87471419	87471509	LINE	L1Md_A	L1	chr5L1Md_A87471334	NonProperStrand	1	chr5	87471097	87471177	LTR	RLTRETN_Mm	ERVK	chr5RLTRETN_Mm87471012	ProperStrand	1	1	-inf
chr17	93736590	93736670	LINE	L1Md_A	L1	chr17L1Md_A93736406	ProperStrand	1	chr17	93736925	93737015	LINE	Lx2B	L1	chr17Lx2B93736948	ProperStrand	1	1	-inf
chr11	62539092	62539190	protein_coding	Zfp287	intron	ENSMUSG00000005267	ProperStrand	2	chr4	53860714	53860776	protein_coding	Tmem38b	intron	ENSMUSG00000028420	ProperStrand	5	1	-19.5000
chr17	50420145	50420180	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	chr10	80175961	80175978	protein_coding	Ap3d1	intron	ENSMUSG00000020198	NonProperStrand	1	1	-inf
chr18	60604422	60624186	SINE	B3	B2	chr18B360604418	NonProperStrand	1	chr2	5379268	5379337	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr17	39847814	39847902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr12	81314706	81314722	protein_coding	Actn1	intron	ENSMUSG00000015143	NonProperStrand	2	1	-6.4812
chr1	43734236	43734326	LINE	L1M4	L1	chr1L1M443734026	ProperStrand	1	chr1	43734635	43734715	LINE	L1M4	L1	chr1L1M443734555	ProperStrand	1	1	-inf
chr2	30030990	30031080	protein_coding-noncoding	D2Wsu81e	utr3	ENSMUSG00000039660	NonProperStrand	1	chr8	126944854	126944934	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-inf
chr17	39847700	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	43595424	43595486	protein_coding	Zbtb20	intron	ENSMUSG00000022708	ProperStrand	6	1	-3.8783
chr3	95183870	95183950	LTR	RLTR45-int	ERVK	chr3RLTR45-int95183341	NonProperStrand	1	chr14	20176142	20176232	SINE	B3A	B2	chr14B3A20176120	ProperStrand	1	1	-inf
chr9	20911436	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	11	chr13	49684300	49684376	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-11.0399
chr2	121308332	121308348	LINE	Lx2	L1	chr2Lx2121307384	NonProperStrand	5	chr5	146835143	146835166	LINE	L1_Mur2	L1	chr5L1_Mur2146834958	ProperStrand	7	1	-16.5030
chr4	71954730	71954810	LINE	Lx2A1	L1	chr4Lx2A171954704	ProperStrand	1	chr4	71955074	71955164	LINE	Lx7	L1	chr4Lx771954948	ProperStrand	1	1	-inf
chr10	20361036	20361052	protein_coding	Pde7b	intron	ENSMUSG00000019990	NonProperStrand	6	chr15	91749726	91749742	protein_coding	Muc19	intron	ENSMUSG00000044021	NonProperStrand	2	1	-19.1249
chr1	122357186	122357232	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr2	130276250	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	2	-4.6969
chr17	39847446	39848050	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	8888537	8888689	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	20	-3.8612
chr15	62008661	62008751	lincRNA	Pvt1	intron	ENSMUSG00000072566	NonProperStrand	8	chr9	72459227	72459307	protein_coding	Rfx7	intron	ENSMUSG00000037674	ProperStrand	2	1	-18.5064
chr17	39846471	39847123	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr5	146261254	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	3	-3.3809
chr17	39847515	39847539	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	24426739	24426865	protein_coding	Abca17	intron	ENSMUSG00000035435	ProperStrand	3	1	-5.4090
chr2	32305535	32305586	protein_coding	Slc25a25	intron	ENSMUSG00000026819	NonProperStrand	2	chr16	23110837	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-8.6674
chr17	39847197	39847242	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	74936703	74936724	protein_coding	Cast	intron	ENSMUSG00000021585	ProperStrand	1	1	-inf
chr9	65441621	65441738	protein_coding	Pif1	intron	ENSMUSG00000041064	ProperStrand	1	chr16	23110854	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr11	106501241	106501324	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr2	32963296	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	4	-7.0576
chr15	30146521	30146611	protein_coding	Ctnnd2	intron	ENSMUSG00000022240	ProperStrand	4	chr16	24619469	24619550	protein_coding	Lpp	intron	ENSMUSG00000033306	ProperStrand	15	1	-15.4040
chr17	24720771	24720901	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr8	126944845	126944936	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	2	-3.7280
chr11	82943622	82943638	LINE	L1_Mus3	L1	chr11L1_Mus382943607	ProperStrand	3	chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.8617
chr4	4873415	4873505	LINE	Lx9	L1	chr4Lx94873436	ProperStrand	1	chr4	4873608	4873688	LTR	ORR1B2	MaLR	chr4ORR1B24873600	NonProperStrand	1	1	-inf
chr12	39959639	39959719	LTR	ORR1A2	MaLR	chr12ORR1A239959644	NonProperStrand	1	chr12	42092723	42092813	protein_coding	Immp2l	intron	ENSMUSG00000056899	ProperStrand	5	1	-inf
chr16	30833377	30833467	LINE	Lx8	L1	chr16Lx830833353	NonProperStrand	1	chr16	30833122	30833202	LTR	RMER19A	ERVK	chr16RMER19A30832750	NonProperStrand	1	1	-inf
chr6	129321807	129321897	LINE	L1MA5	L1	chr6L1MA5129321623	NonProperStrand	1	chr6	129321350	129321430	SINE	B1F	Alu	chr6B1F129321327	NonProperStrand	1	1	-inf
chrX	37082924	37082974	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr2	5379289	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	2	-2.9966
chr12	66470771	66470787	LTR	LTRIS_Mus	ERV1	chr12LTRIS_Mus66470379	ProperStrand	1	chr18	61555715	61555732	protein_coding	Ppargc1b	intron	ENSMUSG00000033871	ProperStrand	3	1	-inf
chr13	38052288	38052312	SINE	B2_Mm1t	B2	chr13B2_Mm1t38052259	ProperStrand	1	chr16	23111394	23111427	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	1	-inf
chr17	25441770	25441860	Low_complexity	T-rich	Low_complexity	chr17T-rich25441762	ProperStrand	1	chr17	25441330	25441410	SINE	ID_B1	B4	chr17ID_B125441324	ProperStrand	1	1	-inf
chr13	112578209	112578306	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr5	121205008	121205116	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	5	-4.5283
chr10	82954550	82954630	protein_coding	Aldh1l2	intron	ENSMUSG00000020256	NonProperStrand	3	chr7	105743442	105743869	protein_coding	2210018M11Rik	exon	ENSMUSG00000035401	ProperStrand	1	1	-inf
chr11	69669703	69669748	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr8	12757418	12757437	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-4.3525
chr6	46672406	46672427	protein_coding	Cntnap2	intron	ENSMUSG00000039419	ProperStrand	26	chr16	23110865	23110883	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.0914
chr7	16641821	16641901	SINE	B3	B2	chr7B316641696	NonProperStrand	1	chr7	16641955	16642045	SINE	B3	B2	chr7B316641906	NonProperStrand	1	1	-inf
chr4	132352895	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr2	90395134	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	5	-3.9671
chr9	123461882	123462171	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr5	150953040	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	6	-7.4287
chr3	96176359	96176419	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr5	121205017	121205107	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-5.2220
chr11	109011748	109011770	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	26449778	26449795	protein_coding	Exosc5	intron	ENSMUSG00000061286	NonProperStrand	2	1	-7.3577
chr11	55482710	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr13	44869601	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	4	-7.6254
chr17	39847172	39847296	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	3	-9.6888
chr8	82227919	82228009	protein_coding	Abce1	intron	ENSMUSG00000058355	NonProperStrand	1	chr8	82223013	82223093	protein_coding	Abce1	intron	ENSMUSG00000058355	ProperStrand	1	1	-inf
chr2	161123825	161123844	LTR	MER21B	ERV1	chr2MER21B161123531	NonProperStrand	1	chr17	12919664	12919718	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	1	-inf
chr10	17124520	17124540	LINE	L1ME3A	L1	chr10L1ME3A17124343	ProperStrand	17	chr13	97190550	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	2	-8.4147
chr17	39845515	39845851	LINE	L1_Mm	L1	chr17L1_Mm39845135	ProperStrand	201	chr17	39845812	39846061	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39845830	ProperStrand	166	40	-22.1448
chr8	100181189	100181269	LINE	L1VL4	L1	chr8L1VL4100181090	ProperStrand	1	chr8	100180919	100181009	LINE	L1_Mus4	L1	chr8L1_Mus4100180376	ProperStrand	1	1	-inf
chr3	123508026	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr2	168601397	168601415	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	1	-4.7825
chr17	16235396	16235486	LINE	Lx8	L1	chr17Lx816235075	NonProperStrand	1	chr17	16235706	16235786	LINE	Lx8	L1	chr17Lx816235583	NonProperStrand	1	1	-inf
chr2	38424683	38424704	protein_coding	Nek6	intron	ENSMUSG00000026749	NonProperStrand	4	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-13.4506
chr5	46374096	46374186	LINE	L1Md_T	L1	chr5L1Md_T46369367	ProperStrand	2	chr12	67667905	67667985	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	2	-inf
chr7	141448802	141448930	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr16	23110753	23110774	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	1	-5.2694
chr17	39846743	39846773	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	69586689	69586707	pseudogene	Gm11223	.	ENSMUSG00000046341	NonProperStrand	1	1	-inf
chr11	119363341	119363421	protein_coding-noncoding	A730011L01Rik	utr5	ENSMUSG00000039850	NonProperStrand	1	chr11	119363157	119363247	protein_coding	A730011L01Rik	intron	ENSMUSG00000039850	NonProperStrand	1	1	-inf
chr16	23110396	23110455	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr13	19102880	19102896	protein_coding	Amph	intron	ENSMUSG00000021314	NonProperStrand	20	1	-3.8729
chr7	130209837	130209917	DNA	Charlie5	MER1_type	chr7Charlie5130209198	NonProperStrand	1	chr7	130209956	130210046	LTR	MTE2b	MaLR	chr7MTE2b130209921	NonProperStrand	1	1	-inf
chr8	8738461	8738551	LTR	ORR1C1-int	MaLR	chr8ORR1C1-int8738268	NonProperStrand	1	chr8	8738128	8738208	LTR	ORR1C1	MaLR	chr8ORR1C18737960	NonProperStrand	1	1	-inf
chr1	123167281	123167361	LTR	IAP-d-int	ERVK	chr1IAP-d-int123167270	ProperStrand	1	chr1	123167168	123167258	LTR	IAPEY3-int	ERVK	chr1IAPEY3-int123166596	ProperStrand	1	1	-inf
chr17	39847738	39847804	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chrX	36264150	36264167	protein_coding	6030498E09Rik	intron	ENSMUSG00000051361	NonProperStrand	2	1	-6.4812
chr12	16706123	16706139	protein_coding	Greb1	intron	ENSMUSG00000036523	ProperStrand	25	chr5	107905176	107905277	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-6.8403
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-6.2633
chr17	39846764	39846854	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	113847923	113848003	lincRNA	A530058N18Rik	intron	ENSMUSG00000092201	NonProperStrand	3	1	-5.9338
chr17	39847990	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	48641808	48641876	protein_coding	Tmeff1	intron	ENSMUSG00000028347	ProperStrand	7	1	-3.5679
chr6	131380358	131380407	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr15	34440828	34440853	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-6.1497
chr17	12919603	12922913	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	3	-5.5647
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	1	-3.8922
chr6	112395040	112395131	LTR	MTB_Mm	MaLR	chr6MTB_Mm112394751	ProperStrand	1	chr6	112395190	112395270	LTR	RMER12	ERVK	chr6RMER12112395151	ProperStrand	1	1	-inf
chr5	147748020	147748100	DNA	Charlie20a	Charlie	chr5Charlie20a147747899	ProperStrand	1	chr5	147747701	147747791	SINE	RSINE1	B4	chr5RSINE1147747698	NonProperStrand	1	1	-inf
chr11	89595907	89595997	LTR	MTC	MaLR	chr11MTC89595679	ProperStrand	1	chr11	89595552	89595633	SINE	B4	B4	chr11B489595451	NonProperStrand	1	1	-inf
chr10	36131975	36131994	LINE	L1_Mus2	L1	chr10L1_Mus236131939	ProperStrand	1	chr9	123462037	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr5	90940073	90940163	LINE	L1ME1	L1	chr5L1ME190939844	ProperStrand	1	chr5	89980140	89980220	protein_coding	Npffr2	intron	ENSMUSG00000035528	NonProperStrand	1	1	-inf
mmu-miR-6240	4	20	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chrX	101590586	101593947	protein_coding	Abcb7	intron	ENSMUSG00000031333	ProperStrand	5	1	-11.3455
chr16	26602783	26602801	protein_coding	Il1rap	intron	ENSMUSG00000022514	NonProperStrand	4	chr5	114851995	114852030	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-9.0327
chr17	39848254	39848299	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr1	184531785	184531801	protein_coding	Capn8	intron	ENSMUSG00000038599	NonProperStrand	1	1	-inf
chr13	4703192	4703272	LINE	Lx8	L1	chr13Lx84703172	ProperStrand	1	chr13	4702920	4703010	Other	RMER1C	Other	chr13RMER1C4702924	NonProperStrand	1	1	-inf
chr4	63962473	63962563	LINE	L1_Mur2	L1	chr4L1_Mur263962384	NonProperStrand	1	chr4	114583120	114583200	lincRNA	9130206I24Rik	intron	ENSMUSG00000085399	NonProperStrand	1	1	-inf
chr10	76725946	76725999	protein_coding	Pofut2	intron	ENSMUSG00000020260	NonProperStrand	2	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	2	-inf
chr16	35981615	35981642	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	2	-3.5622
chr17	63921689	63921706	LTR	MTC-int	MaLR	chr17MTC-int63921022	ProperStrand	1	chr2	32963367	32963421	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-inf
chr2	130276254	130276296	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr19	8252253	8252278	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	1	-6.6610
chr9	61414047	61414065	LTR	MLT1A1	MaLR	chr9MLT1A161413979	NonProperStrand	1	chr1	91366488	91366504	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	1	-inf
chrX	87238364	87238395	LINE	L1Md_F2	L1	chrXL1Md_F287233937	NonProperStrand	93	chr11	119268036	119268081	protein_coding	Rnf213	intron	ENSMUSG00000070327	ProperStrand	5	1	-11.1883
chr18	38528189	38528279	LTR	ORR1B2	MaLR	chr18ORR1B238528047	ProperStrand	1	chr18	38527984	38528064	LTR	ORR1D1	MaLR	chr18ORR1D138527852	ProperStrand	1	1	-inf
chr6	40346572	40346592	protein_coding	Agk	utr3	ENSMUSG00000029916	ProperStrand	1	chr17	24720804	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-inf
chr1	161035408	161035466	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr6	52189838	52189855	protein_coding	Hoxa10	intron	ENSMUSG00000000938	NonProperStrand	3	1	-14.4826
chr17	39847864	39847919	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	81529884	81529929	protein_coding	Slco3a1	intron	ENSMUSG00000025790	NonProperStrand	8	1	-3.3062
chr6	96081743	96081833	protein_coding-noncoding	Fam19a1	utr5	ENSMUSG00000059187	ProperStrand	1	chr6	96081428	96081508	protein_coding	Fam19a1	intron	ENSMUSG00000059187	ProperStrand	8	1	-inf
chr12	99645566	99645661	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr1	131573996	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-7.4108
chr8	44444840	44444930	LINE	Lx	L1	chr8Lx44444602	NonProperStrand	1	chr8	44445286	44445366	SINE	B3A	B2	chr8B3A44445309	NonProperStrand	1	1	-inf
chr3	123507936	123507960	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr4	120553008	120553957	protein_coding	Rims3	intron	ENSMUSG00000032890	ProperStrand	10	1	-6.1771
chr2	3404183	3404201	LTR	IAPEz-int	ERVK	chr2IAPEz-int3401151	NonProperStrand	1	chr17	46521153	46521348	protein_coding	Zfp318	intron	ENSMUSG00000015597	ProperStrand	1	1	-inf
chrX	4899369	4899393	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr3	123507936	123507972	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-4.5098
chr17	39847210	39847351	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr6	3201436	3201560	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	8	-11.7210
chr17	39848363	39848409	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr8	95746117	95746149	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-3.5487
chr11	109011745	109011777	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	47814834	47814853	protein_coding	Gm20517	intron	ENSMUSG00000023984	ProperStrand	2	1	-7.3577
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr12	105031194	105031266	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-7.7233
chr5	115560831	115560921	protein_coding	Acads	utr3	ENSMUSG00000029545	NonProperStrand	6	chr5	115559831	115560763	pseudogene	Gm13826	.	ENSMUSG00000072692	NonProperStrand	1	1	-inf
chr2	168011157	168011185	processed_transcript	RP23-391M18.7	.	ENSMUSG00000093752	NonProperStrand	12	chr5	121205007	121205098	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-6.8530
chr6	115807974	115808049	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr8	126944902	126944967	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-4.1761
chr8	99780893	99780983	LINE	L1_Mur3	L1	chr8L1_Mur399780686	NonProperStrand	1	chr8	99780581	99780661	LTR	RLTR17	ERVK	chr8RLTR1799780051	ProperStrand	1	1	-inf
chr1	122357189	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr13	49684296	49684326	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-6.0848
chr11	57903244	57903324	SINE	B3A	B2	chr11B3A57903208	NonProperStrand	1	chr11	57903534	57903624	SINE	PB1D10	Alu	chr11PB1D1057903499	NonProperStrand	1	1	-inf
chr5	43785201	43785281	SINE	B3	B2	chr5B343785169	NonProperStrand	1	chr5	43784914	43785004	SINE	MIR3	MIR	chr5MIR343784854	NonProperStrand	1	1	-inf
chr2	109782928	109783018	protein_coding	Lgr4	intron	ENSMUSG00000050199	NonProperStrand	1	chr2	109780915	109780997	protein_coding	Lgr4	intron	ENSMUSG00000050199	ProperStrand	1	1	-inf
chr11	94943806	94944601	LTR	ORR1E	MaLR	chr11ORR1E94944268	ProperStrand	5	chr11	94944618	94944927	SINE	PB1D10	Alu	chr11PB1D1094944752	ProperStrand	4	2	-21.8499
chr17	39848008	39848043	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr1	75195309	75195325	processed_transcript	Ankzf1	.	ENSMUSG00000026199	ProperStrand	2	1	-13.4248
chr17	39847440	39847545	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	46773144	46773181	protein_coding	2010012O05Rik	intron	ENSMUSG00000062376	ProperStrand	1	1	-inf
chr2	22744880	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr7	109520119	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-3.5268
chr3	53435359	53435376	protein_coding	Frem2	intron	ENSMUSG00000037016	ProperStrand	1	chr16	11424911	11425016	protein_coding	Snx29	intron	ENSMUSG00000071669	NonProperStrand	4	1	-inf
chr11	69667887	69667926	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr1	155687055	155687101	protein_coding	Rgsl1	intron	ENSMUSG00000042641	NonProperStrand	1	1	-inf
chr17	39847181	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr15	86194891	86194943	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	1	-3.0178
chr13	32744155	32744245	LINE	L1MC	L1	chr13L1MC32744060	NonProperStrand	1	chr13	32744298	32744378	LINE	L1MC3	L1	chr13L1MC332744304	ProperStrand	1	1	-inf
chr15	79037181	79037204	antisense	Gm10863	.	ENSMUSG00000075555	ProperStrand	4	chr13	20618283	20618300	protein_coding	Elmo1	intron	ENSMUSG00000041112	ProperStrand	8	1	-16.7243
chr17	39846877	39846902	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr3	84024718	84024778	protein_coding	Trim2	utr5	ENSMUSG00000027993	NonProperStrand	4	1	-11.2034
chr3	142688298	142688316	LINE	L1Md_F2	L1	chr3L1Md_F2142688264	ProperStrand	36	chr19	8724249	8724293	SINE	B1F	Alu	chr19B1F8724255	ProperStrand	4	1	-13.6127
chr13	8767247	8767337	protein_coding	Adarb2	utr3	ENSMUSG00000052551	ProperStrand	8	chr17	22197973	22198053	protein_coding	Zfp943	intron	ENSMUSG00000053347	NonProperStrand	3	1	-17.4220
chr5	115574578	115574605	protein_coding	Unc119b	utr3	ENSMUSG00000046562	NonProperStrand	1	chr16	23110837	23110889	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr3	34831798	34831888	LTR	MTD-int	MaLR	chr3MTD-int34830892	NonProperStrand	1	chr3	34832048	34832128	LTR	MTD	MaLR	chr3MTD34832027	NonProperStrand	1	1	-inf
chr17	39847440	39848080	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr13	97190544	97190629	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	33	-4.8961
chr11	16817792	16817872	protein_coding	Egfr	utr3	ENSMUSG00000020122	ProperStrand	2	chr11	46033538	46033628	protein_coding	Cyfip2	intron	ENSMUSG00000020340	ProperStrand	3	1	-20.8207
chr11	109011748	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	105337717	105337776	LTR	ORR1A0	MaLR	chr11ORR1A0105337592	NonProperStrand	2	1	-7.3577
chr10	117671585	117671665	LTR	MTA_Mm-int	MaLR	chr10MTA_Mm-int117671270	ProperStrand	1	chr10	117671201	117671291	LTR	MTA_Mm	MaLR	chr10MTA_Mm117670871	ProperStrand	1	1	-inf
chr15	56372779	56372859	LINE	L1_Mur3	L1	chr15L1_Mur356372302	ProperStrand	1	chr15	56373033	56373123	Low_complexity	GA-rich	Low_complexity	chr15GA-rich56373008	ProperStrand	1	1	-inf
chr19	43848038	43848105	LINE	Lx8	L1	chr19Lx843847909	ProperStrand	1	chr2	158359811	158359882	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-inf
chr13	112578180	112578270	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr16	91729453	91729478	protein_coding	Atp5o	intron	ENSMUSG00000022956	NonProperStrand	5	1	-8.0311
chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr1	182300953	182300969	protein_coding	Itpkb	intron	ENSMUSG00000038855	NonProperStrand	1	1	-inf
chr5	70433991	70434081	LINE	Lx9	L1	chr5Lx970433890	ProperStrand	1	chr5	70433753	70433833	LTR	RMER19C	ERVK	chr5RMER19C70433327	NonProperStrand	1	1	-inf
chr11	69669634	69669680	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr3	146630583	146630599	protein_coding	Ttll7	intron	ENSMUSG00000036745	ProperStrand	2	1	-10.8530
chr9	88843375	88843455	lincRNA	Gm17683	intron	ENSMUSG00000091564	ProperStrand	7	chr9	92248520	92248610	protein_coding	1700057G04Rik	intron	ENSMUSG00000074139	ProperStrand	2	1	-18.7768
chr7	93995284	93995302	LINE	L1Md_T	L1	chr7L1Md_T93994338	ProperStrand	5	chr5	114851996	114852038	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-8.5249
chr14	75972590	75972607	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr16	23110835	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.2611
chr10	91182095	91182132	SINE	MIR	MIR	chr10MIR91182034	NonProperStrand	3	chr13	44869606	44869705	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-8.8788
chr2	3194323	3194403	LINE	Lx6	L1	chr2Lx63194277	NonProperStrand	1	chr2	5287675	5287765	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr7	29446498	29446574	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-4.6424
chr11	109011793	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	105172645	105172661	protein_coding	0610012H03Rik	intron	ENSMUSG00000055312	ProperStrand	6	1	-4.7173
chr16	23110780	23110798	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr7	127527905	127528005	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-7.0346
chr3	110273956	110274036	LINE	L1VL4	L1	chr3L1VL4110273519	ProperStrand	1	chr3	110266324	110266414	LINE	Lx5	L1	chr3Lx5110265702	ProperStrand	1	1	-inf
chr2	32963367	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr19	38019538	38019554	protein_coding	Myof	intron	ENSMUSG00000048612	ProperStrand	2	1	-11.2136
chr6	119920759	119920839	protein_coding-noncoding	Wnk1	utr3	ENSMUSG00000045962	ProperStrand	1	chr6	119920563	119920653	protein_coding	Wnk1	intron	ENSMUSG00000045962	ProperStrand	1	1	-inf
chr17	39847658	39847717	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	54304972	54314155	protein_coding	Ccdc150	intron	ENSMUSG00000025983	ProperStrand	3	1	-5.4090
chr16	23111311	23111369	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr8	13014869	13014885	protein_coding	Mcf2l	exon	ENSMUSG00000031442	NonProperStrand	3	1	-7.8954
chr17	39847257	39847273	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr3	88579940	88580030	protein_coding	Syt11	intron	ENSMUSG00000068923	ProperStrand	2	1	-14.2406
chr17	39843692	39843935	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	chr17	39843361	39843720	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	ProperStrand	96	26	-inf
chr17	50127775	50127855	LINE	L1_Rod	L1	chr17L1_Rod50127696	NonProperStrand	1	chr17	50127515	50127605	LINE	Lx9	L1	chr17Lx950127533	NonProperStrand	1	1	-inf
chr2	98818378	98818458	LINE	L1_Mus3	L1	chr2L1_Mus398817273	NonProperStrand	1	chr2	98818494	98818584	LINE	Lx2B	L1	chr2Lx2B98818443	NonProperStrand	1	1	-inf
chr6	131380326	131380406	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr11	80138010	80138026	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	1	-10.9278
chr13	44442435	44442455	LINE	L1MA8	L1	chr13L1MA844442077	ProperStrand	1	chr17	39845119	39845186	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	43	1	-inf
chrX	147009458	147009474	protein_coding	Apex2	intron	ENSMUSG00000025269	ProperStrand	4	chr5	121205017	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-9.2294
chr5	31260395	31260475	protein_coding-noncoding	Preb	utr3	ENSMUSG00000045302	ProperStrand	1	chr5	31257598	31257875	protein_coding	Preb	utr3	ENSMUSG00000045302	ProperStrand	2	1	-inf
chr19	21036721	21036801	LTR	ORR1A0	MaLR	chr19ORR1A021036615	NonProperStrand	1	chr19	21036321	21036411	LTR	RMER6C	ERVK	chr19RMER6C21036146	NonProperStrand	1	1	-inf
chr18	62633851	62633941	LTR	ORR1A4	MaLR	chr18ORR1A462633752	ProperStrand	1	chr18	62634138	62634218	SINE	B1F1	Alu	chr18B1F162634099	ProperStrand	1	1	-inf
chr6	114018020	114018100	SINE	B3	B2	chr6B3114018032	NonProperStrand	1	chr6	114017745	114017835	SINE	B4A	B4	chr6B4A114017726	ProperStrand	1	1	-inf
chr17	39847611	39847652	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	88440832	88440864	protein_coding	Fbxo11	intron	ENSMUSG00000005371	NonProperStrand	3	1	-5.4090
chr11	51606369	51606404	SINE	B3A	B2	chr11B3A51606308	ProperStrand	2	chr16	23110908	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-8.6674
chr1	42902210	42902290	LINE	L1_Mur3	L1	chr1L1_Mur342901422	NonProperStrand	1	chr1	42902420	42902510	LINE	L1_Mur3	L1	chr1L1_Mur342902328	NonProperStrand	1	1	-inf
chr11	97781688	97781742	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr4	117154526	117154567	protein_coding	Rnf220	intron	ENSMUSG00000028677	ProperStrand	13	1	-8.2122
chr8	107639756	107639846	LTR	RMER4B	ERVK	chr8RMER4B107639534	NonProperStrand	1	chr8	107640059	107640139	SINE	B2_Mm1a	B2	chr8B2_Mm1a107640066	NonProperStrand	1	1	-inf
chr1	122357187	122357240	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr2	5379285	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	3	-3.6275
chr2	109869041	109869132	protein_coding-noncoding	Ccdc34	utr5	ENSMUSG00000027160	ProperStrand	2	chr2	109868702	109868782	protein_coding	Ccdc34	intron	ENSMUSG00000027160	ProperStrand	5	2	-inf
chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	31314737	31314756	protein_coding	Hmcn2	intron	ENSMUSG00000055632	NonProperStrand	6	1	-6.2750
chr17	8487861	8487882	protein_coding	Brp44l	intron	ENSMUSG00000023861	ProperStrand	3	chr16	23110867	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-7.5775
chr9	123462082	123462100	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr1	89545240	89545262	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	6	1	-5.5993
chr17	39847458	39847475	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	77534103	77534121	protein_coding	Cryba1	intron	ENSMUSG00000000724	ProperStrand	1	1	-inf
chr17	39847717	39847736	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	75859447	75859517	protein_coding	Pcnt	intron	ENSMUSG00000001151	ProperStrand	3	1	-5.4090
chr10	23785343	23785462	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr3	123507965	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	8	-5.5674
chr2	24832407	24832439	protein_coding	Pnpla7	intron	ENSMUSG00000036833	NonProperStrand	5	chr13	97190552	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-7.6184
chr17	39847174	39847220	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr6	46996884	46996903	protein_coding	Cntnap2	intron	ENSMUSG00000039419	ProperStrand	26	1	-3.0862
chr1	36658630	36658710	protein_coding	Fam178b	intron	ENSMUSG00000046337	NonProperStrand	6	chr1	36658854	36658944	pseudogene	Gm6428	.	ENSMUSG00000089906	ProperStrand	1	1	-inf
chr11	72784165	72784255	protein_coding-noncoding	Atp2a3	utr5	ENSMUSG00000020788	NonProperStrand	1	chr11	72784592	72784672	protein_coding	Atp2a3	intron	ENSMUSG00000020788	NonProperStrand	2	1	-inf
chr11	106501242	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr1	152567427	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	13	1	-7.6431
chr17	12911689	12911738	protein_coding	Igf2r	intron	ENSMUSG00000023830	ProperStrand	1	chr19	8888597	8888676	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-inf
chr17	34950971	34950999	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr2	32963367	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-4.1447
chrX	132594456	132594536	LINE	Lx6	L1	chrXLx6132594027	ProperStrand	1	chrX	133503588	133503678	protein_coding	Tmsb15l	intron	ENSMUSG00000072955	ProperStrand	1	1	-inf
chr8	75029197	75029277	lincRNA	Gm17435	exon	ENSMUSG00000090373	ProperStrand	1	chr8	75029505	75029595	protein_coding	Med26	intron	ENSMUSG00000045248	NonProperStrand	3	1	-inf
chr17	39847688	39847708	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	100496929	100497109	LTR	IAPEY3-int	ERVK	chr7IAPEY3-int100495866	ProperStrand	1	1	-inf
chr15	88663735	88663825	SINE	B1_Mus1	Alu	chr15B1_Mus188663756	NonProperStrand	1	chr15	88663523	88663603	SINE	B3	B2	chr15B388663513	ProperStrand	1	1	-inf
chr11	109011820	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	118542027	118543300	LINE	Lx4B	L1	chr7Lx4B118540674	NonProperStrand	2	1	-7.3577
chr14	70374155	70374257	protein_coding	Pebp4	intron	ENSMUSG00000022085	NonProperStrand	6	chr1	180587397	180587957	protein_coding	Kif26b	intron	ENSMUSG00000026494	ProperStrand	6	1	-16.4350
chr3	22191475	22191503	SINE	ID_B1	B4	chr3ID_B122191389	ProperStrand	1	chr16	23110865	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr7	132728898	132728972	SINE	ID_B1	B4	chr7ID_B1132728872	ProperStrand	1	chr5	121205111	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-inf
chr2	102829329	102829356	LTR	ORR1C1-int	MaLR	chr2ORR1C1-int102828737	ProperStrand	1	chr9	120130448	120130486	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	1	-inf
chr17	39847102	39847183	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr16	35981721	35981811	antisense	Gm15564	.	ENSMUSG00000086324	ProperStrand	6	1	-5.9886
chr8	95864377	95864393	LINE	L1M5	L1	chr8L1M595864158	NonProperStrand	1	chr5	92421968	92421988	pseudogene	Gm15710	.	ENSMUSG00000084111	NonProperStrand	9	1	-inf
chr17	39848100	39848162	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr5	43557341	43557361	LTR	MTD	MaLR	chr5MTD43557253	ProperStrand	1	1	-inf
chr13	54190151	54190186	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	chr9	15313885	15315249	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	3	-9.1070
chr10	122565748	122565828	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr8	109507426	109507516	protein_coding	Sntb2	intron	ENSMUSG00000041308	ProperStrand	1	1	-inf
chr8	81002502	81002582	DNA	RCHARR1	MER1_type	chr8RCHARR181002289	ProperStrand	1	chr8	81002130	81002220	LTR	LTR31	ERV1	chr8LTR3181002080	ProperStrand	1	1	-inf
chr18	33795209	33795240	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr16	23110837	23110883	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-3.1629
chr2	22744834	22744925	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr17	39846336	39846887	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	4	-3.5082
chr11	6528085	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr5	30918239	30918310	protein_coding	Kcnk3	intron	ENSMUSG00000049265	ProperStrand	4	1	-11.3612
chr19	18415617	18415697	LTR	MTB	MaLR	chr19MTB18415386	ProperStrand	1	chr19	18415281	18415371	SINE	B3A	B2	chr19B3A18415191	NonProperStrand	1	1	-inf
chr10	47651514	47651604	LINE	Lx	L1	chr10Lx47651429	NonProperStrand	1	chr10	47651262	47651342	LTR	IAPEY2_LTR	ERVK	chr10IAPEY2_LTR47651099	ProperStrand	1	1	-inf
chr6	70844810	70844828	protein_coding	Eif2ak3	intron	ENSMUSG00000031668	NonProperStrand	2	chr19	8888597	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-10.9478
chr3	88170658	88170748	protein_coding-noncoding	Paqr6	utr5	ENSMUSG00000041423	ProperStrand	1	chr3	88170410	88170490	protein_coding	Paqr6	intron	ENSMUSG00000041423	ProperStrand	1	1	-inf
chr10	51160262	51160352	LTR	MERVL-int	ERVL	chr10MERVL-int51156935	ProperStrand	1	chr9	19657939	19658019	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	NonProperStrand	22	1	-inf
chr10	56007471	56007561	LINE	L1Md_T	L1	chr10L1Md_T56007060	ProperStrand	1	chr10	56006999	56007079	LTR	RLTR22_Mur	ERVK	chr10RLTR22_Mur56006867	ProperStrand	1	1	-inf
chr13	9834318	9834407	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr13	44869597	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-5.2488
chr4	46344308	46344325	antisense	Gm12446	.	ENSMUSG00000087383	NonProperStrand	1	chr6	82042912	82042932	protein_coding	Fam176a	utr3	ENSMUSG00000035104	ProperStrand	4	1	-inf
chr2	131247447	131247463	LINE	L1M2	L1	chr2L1M2131247253	NonProperStrand	1	chr4	132352774	132352797	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	1	-inf
chr3	6786904	6786984	LINE	Lx	L1	chr3Lx6786779	NonProperStrand	1	chr3	6786699	6786789	SINE	B1_Mus1	Alu	chr3B1_Mus16786643	ProperStrand	1	1	-inf
chr17	39847946	39848036	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	167259757	167259837	protein_coding	Dcaf6	utr3	ENSMUSG00000026571	ProperStrand	9	1	-3.0808
chr18	35743170	35743260	protein_coding	Matr3	intron	ENSMUSG00000037236	ProperStrand	2	chr18	34973214	34973294	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	3	1	-20.8207
chr10	65738748	65738828	LINE	L1_Mus3	L1	chr10L1_Mus365738501	ProperStrand	1	chr2	43921458	43921548	protein_coding	Arhgap15	intron	ENSMUSG00000049744	ProperStrand	5	1	-inf
chr17	39846653	39846686	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	62842259	62842359	protein_coding	Sirt1	intron	ENSMUSG00000020063	ProperStrand	3	1	-5.9338
chr2	5304251	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr9	15313839	15315321	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	6	-3.2384
chr4	120405364	120405380	protein_coding	Kcnq4	intron	ENSMUSG00000028631	ProperStrand	1	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-inf
chr11	109011657	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	110281288	110281369	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	7	-6.9634
chr17	39846412	39846879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr2	5379132	5379356	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	29	-3.5537
chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr2	90395138	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	5	-5.9914
chr17	39847449	39848028	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	110046424	110046532	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	8	-4.8829
chr17	39847207	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr3	116867150	116867169	LTR	ORR1E	MaLR	chr3ORR1E116867013	NonProperStrand	1	1	-inf
chr9	123462078	123462101	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr7	25286814	25286914	protein_coding	Cadm4	intron	ENSMUSG00000054793	ProperStrand	5	1	-5.9940
chr7	15379507	15379597	LINE	L1Md_F2	L1	chr7L1Md_F215375974	ProperStrand	1	chr7	15379802	15379882	LTR	MTA_Mm-int	MaLR	chr7MTA_Mm-int15379713	ProperStrand	1	1	-inf
chr11	55482719	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr8	126944899	126944978	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-4.2355
chr6	6756806	6756896	SINE	B1F	Alu	chr6B1F6756756	NonProperStrand	1	chr6	6756692	6756772	Simple_repeat	(TTTC)n	Simple_repeat	chr6(TTTC)n6756602	ProperStrand	1	1	-inf
chr11	109011749	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	24669817	24669833	protein_coding	Rab26	intron	ENSMUSG00000079657	NonProperStrand	1	1	-inf
chr5	60218702	60218792	LTR	RLTR13D6	ERVK	chr5RLTR13D660218440	NonProperStrand	1	chr5	75878179	75878259	Low_complexity	CT-rich	Low_complexity	chr5CT-rich75878123	ProperStrand	1	1	-inf
chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chrX	49447370	49447387	protein_coding	Gpc4	intron	ENSMUSG00000031119	ProperStrand	1	1	-inf
chr16	18749418	18749498	LINE	L1Md_F2	L1	chr16L1Md_F218749365	NonProperStrand	1	chr16	18749273	18749363	LINE	L1_Mus3	L1	chr16L1_Mus318748528	ProperStrand	1	1	-inf
chr2	90395144	90395181	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr11	5015739	5016640	protein_coding	Emid1	intron	ENSMUSG00000034164	NonProperStrand	1	1	-inf
mmu-miR-2137	0	20	miRNA	mmu-miR-2137	.	mmu-miR-2137	ProperStrand	5	chr8	85934440	85934461	protein_coding	Clgn	intron	ENSMUSG00000002190	NonProperStrand	1	1	-inf
chr3	148797367	148797447	DNA	MER5A1	MER1_type	chr3MER5A1148797350	NonProperStrand	1	chr3	148797168	148797258	SINE	RSINE1	B4	chr3RSINE1148797161	ProperStrand	1	1	-inf
chr17	24719728	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr2	32963313	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	2	-3.7233
chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr8	11213613	11214661	protein_coding	Col4a1	exon	ENSMUSG00000031502	ProperStrand	2	1	-8.9865
chr1	153084324	153084404	SINE	B1_Mm	Alu	chr1B1_Mm153084287	NonProperStrand	1	chr1	153084541	153084631	SINE	RSINE1	B4	chr1RSINE1153084461	ProperStrand	1	1	-inf
chr5	146260991	146261220	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr13	97190541	97190626	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	15	-12.8384
chr7	25785913	25785934	protein_coding	Atp1a3	intron	ENSMUSG00000040907	ProperStrand	2	chr3	96414568	96414584	pseudogene	6330549D23Rik	.	ENSMUSG00000045327	ProperStrand	2	1	-21.5566
chr17	35162562	35162697	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr9	123461822	123462170	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	5	-5.3291
chr9	16727588	16727668	LINE	L1_Mus3	L1	chr9L1_Mus316727156	ProperStrand	1	chr9	16727875	16727965	LINE	Lx4A	L1	chr9Lx4A16727671	NonProperStrand	1	1	-inf
chr11	109011794	109011845	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	21795202	21795219	protein_coding	Ccdc151	intron	ENSMUSG00000039632	NonProperStrand	2	1	-7.3577
chr17	39846703	39846721	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr11	3749567	3749584	protein_coding	Osbp2	intron	ENSMUSG00000020435	ProperStrand	7	1	-4.0682
chr7	23550649	23550739	LINE	L1Md_F3	L1	chr7L1Md_F323550562	ProperStrand	1	chr7	23548749	23548829	SINE	B3A	B2	chr7B3A23548617	NonProperStrand	1	1	-inf
chr3	119141943	119141959	LTR	MLT1D	MaLR	chr3MLT1D119141914	NonProperStrand	1	chr16	35981580	35981649	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-inf
chr5	121205024	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr17	28836533	28836563	protein_coding	Mapk14	intron	ENSMUSG00000053436	ProperStrand	2	1	-11.0157
chr4	115855040	115855130	SINE	B1_Mus1	Alu	chr4B1_Mus1115855018	ProperStrand	1	chr4	115855165	115855245	SINE	B1_Mus2	Alu	chr4B1_Mus2115855180	ProperStrand	1	1	-inf
mmu-miR-6240	4	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr15	34440791	34440871	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-3.8325
chr3	88485030	88485071	LTR	MYSERV6-int	ERVK	chr3MYSERV6-int88484225	ProperStrand	1	chr5	121205053	121205145	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-inf
chr18	9877354	9877434	protein_coding	Colec12	utr3	ENSMUSG00000036103	NonProperStrand	4	chr6	35006836	35006926	protein_coding	Cnot4	intron	ENSMUSG00000038784	NonProperStrand	2	1	-19.9239
chrX	94189819	94189838	LINE	L1VL2	L1	chrXL1VL294189392	NonProperStrand	10	chr13	112578218	112578308	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-6.5461
chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr5	107904591	107907469	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	2	-5.2149
chr17	39847956	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr1	191986372	191986389	protein_coding	Prox1	intron	ENSMUSG00000010175	NonProperStrand	1	1	-inf
chr9	17987812	17987839	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	13	chr4	132352895	132352948	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-7.7897
chr11	116843219	116843235	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	chr8	60923174	60927235	protein_coding	Galntl6	intron	ENSMUSG00000061864	ProperStrand	13	1	-12.0526
chr13	9834316	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr8	3803226	3803326	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	1	-11.2045
chr17	39847844	39847937	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	112262422	112262470	LTR	MERVL-int	ERVL	chr2MERVL-int112257458	NonProperStrand	2	1	-6.4812
chr17	39846817	39846851	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr17	39843457	39843547	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	65	2	-8.8864
chrX	4899368	4899405	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr18	35557078	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-6.5543
chr12	101885554	101885570	protein_coding	Rps6ka5	intron	ENSMUSG00000021180	NonProperStrand	1	chr5	24371966	24372133	protein_coding	Prkag2	exon	ENSMUSG00000028944	NonProperStrand	18	1	-inf
chr6	58460587	58460667	LINE	L1Md_T	L1	chr6L1Md_T58458379	ProperStrand	1	chr6	58460759	58460849	LINE	L1Md_T	L1	chr6L1Md_T58460678	ProperStrand	1	1	-inf
chr11	109011784	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	97162869	97162893	protein_coding	Arl6ip5	intron	ENSMUSG00000035199	NonProperStrand	7	1	-4.3977
chr11	116843218	116843236	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	chr4	106697137	106697154	protein_coding	Ssbp3	intron	ENSMUSG00000061887	NonProperStrand	7	1	-13.3637
chr8	61550090	61550180	SINE	B4A	B4	chr8B4A61550081	NonProperStrand	1	chr8	61549867	61549947	Simple_repeat	(TG)n	Simple_repeat	chr8(TG)n61549855	ProperStrand	1	1	-inf
chr11	97781638	97781762	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr16	23110428	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	5	-5.0111
chrX	114468660	114468750	LINE	L1VL2	L1	chrXL1VL2114468209	ProperStrand	1	chrX	114469092	114469172	LINE	L1_Mus1	L1	chrXL1_Mus1114469025	ProperStrand	1	1	-inf
chr13	107825895	107825949	LTR	LTR16A	ERVL	chr13LTR16A107825808	ProperStrand	1	chr17	74641790	74642266	protein_coding	Memo1	intron	ENSMUSG00000058704	NonProperStrand	2	1	-inf
chr1	122357187	122357234	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr5	107905208	107905256	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-3.6699
chr4	132310268	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr16	36041561	36041577	protein_coding	Wdr5b	utr5	ENSMUSG00000034379	ProperStrand	1	1	-inf
chr13	19410050	19410140	LINE	L1Md_A	L1	chr13L1Md_A19406899	NonProperStrand	1	chr13	19410345	19410425	LINE	L1Md_A	L1	chr13L1Md_A19410195	NonProperStrand	1	1	-inf
chr5	17776762	17776779	protein_coding	Gnai1	intron	ENSMUSG00000057614	ProperStrand	13	chr16	43653633	43653650	protein_coding	Tigit	intron	ENSMUSG00000071552	NonProperStrand	12	1	-13.3043
chr10	40258553	40258679	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	23	chr9	123461806	123462124	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	2	-5.1583
chr12	108882792	108882833	Low_complexity	GA-rich	Low_complexity	chr12GA-rich108882691	NonProperStrand	1	chr16	23110421	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-inf
chr17	39846453	39846491	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	56707515	56707603	protein_coding	Tfg	intron	ENSMUSG00000022757	ProperStrand	4	1	-5.2608
chr4	125711865	125711884	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	chr7	4546836	4546854	protein_coding	Ptprh	intron	ENSMUSG00000035429	ProperStrand	2	1	-15.9877
chr10	45552597	45552677	LINE	Lx9	L1	chr10Lx945552512	ProperStrand	1	chr10	45552033	45552123	LTR	RMER6A	ERVK	chr10RMER6A45551612	NonProperStrand	1	1	-inf
chr5	74366394	74366484	LINE	L1MC4	L1	chr5L1MC474366308	NonProperStrand	1	chr5	74366798	74366878	LTR	RMER17A2	ERVK	chr5RMER17A274366558	NonProperStrand	1	1	-inf
chr18	35557029	35557100	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr15	37997790	37997806	protein_coding	Ubr5	intron	ENSMUSG00000037487	NonProperStrand	2	1	-12.0542
chr14	47300570	47300650	LTR	LTR82A	ERVL	chr14LTR82A47300471	NonProperStrand	1	chr14	45324050	45324140	protein_coding	Gm8257	intron	ENSMUSG00000079265	NonProperStrand	1	1	-inf
chr2	102829380	102829443	Simple_repeat	(CATA)n	Simple_repeat	chr2(CATA)n102829380	NonProperStrand	15	chr13	97190545	97190585	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.3138
chr12	44536066	44536156	LTR	ORR1B1-int	MaLR	chr12ORR1B1-int44535936	ProperStrand	1	chr12	44535819	44535899	LTR	ORR1B1	MaLR	chr12ORR1B144535546	ProperStrand	1	1	-inf
chr13	91785513	91785529	protein_coding	Ssbp2	intron	ENSMUSG00000003992	NonProperStrand	3	chr16	57391525	57391615	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-14.7452
chr11	32205613	32206999	LTR	ORR1C2	MaLR	chr11ORR1C232205617	ProperStrand	1	chr11	32208382	32208738	Simple_repeat	(CA)n	Simple_repeat	chr11(CA)n32208533	ProperStrand	1	1	-inf
chr17	34950950	34952061	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr16	23110825	23110907	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	3	-5.3291
chr2	60250644	60250734	SINE	B4	B4	chr2B460250531	ProperStrand	2	chr2	60250338	60250418	antisense	Gm13580	.	ENSMUSG00000087283	ProperStrand	2	2	-inf
chr16	23111315	23111361	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr10	110931961	110931978	protein_coding	Nap1l1	intron	ENSMUSG00000058799	ProperStrand	2	1	-8.9865
chr11	55482810	55482829	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr17	23818852	23818871	protein_coding	Cldn6	utr3	ENSMUSG00000023906	NonProperStrand	5	1	-11.1668
chr11	78181687	78181727	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	9	chr9	123462142	123462162	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-4.7558
chr11	109011725	109011850	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	5379261	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	28	-5.1542
chr17	83220596	83220686	LTR	MTE2a	MaLR	chr17MTE2a83220470	NonProperStrand	4	chr17	83220324	83220405	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n83220316	ProperStrand	4	4	-inf
chr5	62121831	62121854	LINE	L1_Mur3	L1	chr5L1_Mur362121770	NonProperStrand	3	chr2	5379274	5379374	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-8.3841
chr5	146261025	146261069	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	ProperStrand	4	chr19	35013911	35014011	protein_coding	Kif20b	intron	ENSMUSG00000024795	NonProperStrand	1	1	-inf
chr2	132719255	132719335	LINE	L1MB4	L1	chr2L1MB4132719094	NonProperStrand	1	chr2	132719486	132719578	LINE	L2	L2	chr2L2132719405	NonProperStrand	1	1	-inf
chr6	6160922	6161002	protein_coding	Slc25a13	intron	ENSMUSG00000015112	NonProperStrand	6	chr6	86737442	86737532	protein_coding	Anxa4	intron	ENSMUSG00000029994	ProperStrand	1	1	-inf
chr15	86194873	86194917	protein_coding	Tbc1d22a	intron	ENSMUSG00000051864	ProperStrand	27	chr8	13876100	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-7.9472
chr2	152120985	152121003	protein_coding	Tbc1d20	intron	ENSMUSG00000027465	ProperStrand	1	chr4	132309944	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr15	35295980	35296070	LINE	L1_Mus2	L1	chr15L1_Mus235294851	ProperStrand	1	chr15	35296113	35296193	SINE	B2_Mm1a	B2	chr15B2_Mm1a35296122	ProperStrand	1	1	-inf
chr5	47978559	47978639	LINE	Lx3C	L1	chr5Lx3C47977597	ProperStrand	1	chr5	47978860	47978950	LINE	Lx3C	L1	chr5Lx3C47978554	ProperStrand	1	1	-inf
chr17	39846808	39846841	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	52828713	52828732	protein_coding	Slc35f1	utr3	ENSMUSG00000038602	ProperStrand	6	1	-4.3847
chr8	119605136	119605152	protein_coding	Pkd1l2	intron	ENSMUSG00000034416	ProperStrand	11	chr2	35303230	35303270	protein_coding	Ggta1	intron	ENSMUSG00000035778	NonProperStrand	2	2	-inf
chr13	44869594	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr2	32963287	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	9	-10.2328
chr15	13197341	13197421	LINE	Lx6	L1	chr15Lx613196940	ProperStrand	1	chr15	13197608	13197698	LINE	Lx6	L1	chr15Lx613197551	ProperStrand	1	1	-inf
chr7	82813094	82813111	protein_coding	Akap13	intron	ENSMUSG00000066406	NonProperStrand	3	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-9.1493
chr6	55103672	55103762	LTR	ORR1E	MaLR	chr6ORR1E55103521	ProperStrand	1	chr6	55103452	55103532	SINE	MIRb	MIR	chr6MIRb55103352	NonProperStrand	1	1	-inf
chr9	120128539	120128580	Simple_repeat	(TG)n	Simple_repeat	chr9(TG)n120128151	ProperStrand	1	chr2	32963396	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-inf
chrX	4899374	4899404	LINE	L1VL2	L1	chrXL1VL24898483	ProperStrand	23	chr11	69667930	69667976	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-5.3808
chr12	71137883	71137899	protein_coding	Nin	intron	ENSMUSG00000021068	NonProperStrand	2	chr16	59555144	59555161	protein_coding	Crybg3	exon	ENSMUSG00000022723	NonProperStrand	2	1	-21.5566
chr10	60299135	60299481	LINE	L1MC3	L1	chr10L1MC360298897	NonProperStrand	1	chr2	125538457	125538475	protein_coding	Shc4	intron	ENSMUSG00000035109	NonProperStrand	1	1	-inf
chr9	64175052	64175120	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	9	chr2	32963296	32963364	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-7.6471
chr1	136364889	136364969	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	10	chr13	44869933	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.2025
chr9	108490077	108490109	protein_coding	P4htm	intron	ENSMUSG00000006675	NonProperStrand	7	chr17	24720869	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	1	-7.9972
chr2	126959142	126959222	protein_coding-noncoding	Ncaph	utr3	ENSMUSG00000034906	ProperStrand	2	chr2	126959029	126959119	protein_coding	Ncaph	intron	ENSMUSG00000034906	ProperStrand	2	2	-inf
chr5	88335977	88336067	LINE	Lx7	L1	chr5Lx788335967	NonProperStrand	1	chr5	88335799	88335879	LINE	Lx8	L1	chr5Lx888335303	ProperStrand	1	1	-inf
chr4	26364891	26364981	LINE	Lx5	L1	chr4Lx526364478	ProperStrand	1	chr4	26365480	26365560	LTR	MTD	MaLR	chr4MTD26365368	NonProperStrand	1	1	-inf
chr6	124715368	124715404	protein_coding	Eno2	intron	ENSMUSG00000004267	NonProperStrand	4	chr1	89545237	89545254	protein_coding	Inpp5d	intron	ENSMUSG00000026288	NonProperStrand	6	1	-17.3470
chr17	39847235	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr6	38841025	38841070	protein_coding	Tbxas1	intron	ENSMUSG00000029925	NonProperStrand	4	1	-6.8874
chr10	23785346	23785436	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr18	10052131	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	1	-3.5603
chr4	10899207	10899223	LTR	MTD	MaLR	chr4MTD10899172	NonProperStrand	4	chr2	5379315	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-7.6968
chr4	132352896	132352981	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chr17	34952030	34952075	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	1	-5.0161
chr18	9877649	9877729	protein_coding	Colec12	utr3	ENSMUSG00000036103	NonProperStrand	4	chr8	62930739	62930829	protein_coding	Gm10283	intron	ENSMUSG00000070023	NonProperStrand	3	1	-18.9508
chr2	28513338	28513357	protein_coding	Tsc1	intron	ENSMUSG00000026812	NonProperStrand	4	chr13	44869592	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-8.1902
chr18	51289857	51289873	protein_coding	Prr16	intron	ENSMUSG00000073565	ProperStrand	2	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-13.1695
chr10	55272477	55272557	LINE	L1ME3	L1	chr10L1ME355272410	NonProperStrand	1	chr17	29126356	29126446	protein_coding	Stk38	intron	ENSMUSG00000024006	NonProperStrand	1	1	-inf
chr5	142728644	142728734	LTR	IAPLTR2_Mm	ERVK	chr5IAPLTR2_Mm142728420	NonProperStrand	1	chr5	142728911	142728991	LTR	MTA_Mm	MaLR	chr5MTA_Mm142728891	ProperStrand	1	1	-inf
chr5	108319819	108319909	LTR	MTC	MaLR	chr5MTC108319785	NonProperStrand	1	chr5	108319600	108319680	SINE	B1_Mur4	Alu	chr5B1_Mur4108319548	NonProperStrand	1	1	-inf
chr17	39846353	39847125	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr10	127538704	127557421	protein_coding	Baz2a	intron	ENSMUSG00000040054	NonProperStrand	10	3	-8.8243
chr5	146261173	146261227	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr7	144405637	144405702	protein_coding	Ebf3	intron	ENSMUSG00000010476	NonProperStrand	6	1	-7.2355
chr3	123507990	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	mmu-miR-6240	2	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	2	-3.8108
chr3	123507995	123508062	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-3.5077
chr11	17221283	17221329	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	7	chr18	35557078	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-9.0177
chr5	134249885	134249908	LTR	MT2A	ERVL	chr5MT2A134249640	ProperStrand	1	chr7	12930798	12930833	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	4	1	-inf
chr7	109520115	109520251	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr8	13876094	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	8	-23.2374
chr17	39847040	39847113	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	60176993	60177083	Simple_repeat	(CA)n	Simple_repeat	chr13(CA)n60176985	NonProperStrand	1	1	-inf
chr4	81540138	81540218	LINE	Lx8	L1	chr4Lx881540082	NonProperStrand	1	chr4	81539968	81540058	SINE	B2_Mm2	B2	chr4B2_Mm281539900	ProperStrand	1	1	-inf
chr9	123461905	123462128	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr2	158356435	158359844	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	7	-6.5374
chr13	97190544	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr9	15313802	15315266	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	5	-3.1570
chr1	4280939	4281029	LINE	L1_Mur3	L1	chr1L1_Mur34280854	ProperStrand	1	chr1	4281117	4281197	LTR	RLTR21	ERVK	chr1RLTR214281102	NonProperStrand	1	1	-inf
chr17	39848721	39848812	LINE	L1Md_T	L1	chr17L1Md_T39848464	ProperStrand	182	chr5	146261240	146261280	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	1	-5.4906
chr12	20261343	20261423	LTR	IAPLTR3-int	ERVK	chr12IAPLTR3-int20261114	NonProperStrand	1	chr12	20261743	20261834	LTR	IAPLTR4	ERVK	chr12IAPLTR420261494	NonProperStrand	1	1	-inf
chr5	146261240	146261279	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr4	56897686	56897746	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-8.5448
chr11	55482693	55482773	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr17	24719675	24719743	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-4.0582
chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	chr9	123461971	123462018	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	2	-5.7137
chr7	10056880	10056970	LINE	L1Md_F2	L1	chr7L1Md_F210053791	NonProperStrand	1	chr7	7510476	7510556	protein_coding	Vmn2r33	intron	ENSMUSG00000090895	NonProperStrand	1	1	-inf
chr9	15275879	15275933	LTR	RLTR21	ERVK	chr9RLTR2115275489	NonProperStrand	1	chr15	83138288	83138327	protein_coding	Arfgap3	intron	ENSMUSG00000054277	ProperStrand	3	1	-inf
chr15	94200577	94200595	protein_coding	Adamts20	intron	ENSMUSG00000022449	NonProperStrand	16	chr8	126944931	126944981	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-7.7321
chr11	109012009	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr17	12919665	12919718	protein_coding	Igf2r	intron	ENSMUSG00000023830	NonProperStrand	56	1	-5.7071
chr11	106501274	106501324	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr6	115808026	115808104	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-3.6916
chr14	73535060	73535150	protein_coding	Rcbtb2	intron	ENSMUSG00000022106	ProperStrand	1	chr18	5022991	5023071	protein_coding	Svil	intron	ENSMUSG00000024236	ProperStrand	5	1	-inf
chr2	130276233	130278062	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr13	44869606	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	4	-3.3672
chr11	109011794	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr14	55540458	55540475	protein_coding	Efs	intron	ENSMUSG00000022203	ProperStrand	8	1	-4.1268
chr10	56387641	56387697	LINE	L1_Mm	L1	chr10L1_Mm56387500	NonProperStrand	1	chr17	39848124	39848146	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-inf
chr4	46115148	46115228	protein_coding	Tmod1	intron	ENSMUSG00000028328	ProperStrand	4	chr4	119263876	119263965	protein_coding	Foxj3	intron	ENSMUSG00000032998	NonProperStrand	4	1	-18.2441
chr17	39847437	39848080	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr8	12757418	12757437	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	5	-5.5595
chr11	120346462	120346506	protein_coding-noncoding	Mrpl12	utr5	ENSMUSG00000039640	NonProperStrand	2	chr8	84011405	84011422	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	28	1	-15.9146
chr4	129058834	129058914	LTR	RMER10B	ERVL	chr4RMER10B129058463	ProperStrand	1	chr4	129058930	129059020	SINE	B1_Mus2	Alu	chr4B1_Mus2129058946	ProperStrand	1	1	-inf
chr11	69667929	69667976	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr16	34549627	34549645	protein_coding	Kalrn	intron	ENSMUSG00000061751	ProperStrand	9	1	-7.2899
chr5	146261275	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr10	80674127	80674211	protein_coding	Atcay	intron	ENSMUSG00000034958	ProperStrand	1	1	-inf
chr7	5899202	5899292	LINE	L1Md_F3	L1	chr7L1Md_F35898233	NonProperStrand	2	chr7	5900349	5900429	LINE	L1Md_F3	L1	chr7L1Md_F35898233	ProperStrand	1	1	-inf
chrX	44029060	44029140	LINE	Lx	L1	chrXLx44028872	ProperStrand	1	chrX	44029373	44029463	LINE	Lx9	L1	chrXLx944029178	ProperStrand	1	1	-inf
chr9	123461957	123462020	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	chr1	34113957	34116134	protein_coding	Dst	intron	ENSMUSG00000026131	NonProperStrand	10	1	-12.1841
chr5	33719657	33719737	LINE	L1MEc	L1	chr5L1MEc33719583	NonProperStrand	1	chr5	33719996	33720087	SINE	RSINE1	B4	chr5RSINE133720001	ProperStrand	1	1	-inf
chr2	22744824	22744909	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr13	44869606	44869922	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	3	-7.2872
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr19	8709579	8711854	LTR	MMERVK10C-int	ERVK	chr19MMERVK10C-int8709035	ProperStrand	1	1	-inf
chr1	91988436	91988455	protein_coding	Iqca	intron	ENSMUSG00000026301	NonProperStrand	3	chr4	126287902	126287918	protein_coding	5730409E04Rik	intron	ENSMUSG00000073755	ProperStrand	1	1	-inf
chr10	95235006	95235086	LTR	ORR1A2	MaLR	chr10ORR1A295234740	NonProperStrand	1	chr10	95234639	95234729	SINE	MIR	MIR	chr10MIR95234594	ProperStrand	1	1	-inf
chr9	41650598	41650678	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n41650484	ProperStrand	1	chr9	41650796	41650886	Simple_repeat	(CA)n	Simple_repeat	chr9(CA)n41650790	ProperStrand	1	1	-inf
chrX	162470016	162470096	LINE	Lx	L1	chrXLx162469884	NonProperStrand	1	chrX	162470145	162470235	LINE	Lx8	L1	chrXLx8162470092	ProperStrand	1	1	-inf
chr15	37228764	37228854	protein_coding	Grhl2	intron	ENSMUSG00000022286	NonProperStrand	3	chr15	37328723	37328803	protein_coding	Ncald	intron	ENSMUSG00000051359	ProperStrand	4	1	-18.9366
chr7	110046442	110046536	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr2	130276235	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	3	-8.4080
chr17	69707886	69707976	DNA	MER53	hAT	chr17MER5369707823	ProperStrand	1	chr17	4082633	4082713	LINE	L1Md_A	L1	chr17L1Md_A4082095	ProperStrand	22	1	-inf
chr17	39847081	39847123	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr15	83149761	83149794	protein_coding	Arfgap3	intron	ENSMUSG00000054277	NonProperStrand	6	1	-5.9886
chr15	73138109	73146383	protein_coding	Ptk2	intron	ENSMUSG00000022607	ProperStrand	25	chr5	107907369	107907411	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-6.8403
chr17	39846462	39846521	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	82740408	82740428	antisense	4930564K09Rik	.	ENSMUSG00000086273	NonProperStrand	1	1	-inf
chr10	28112721	28112789	protein_coding	Ptprk	intron	ENSMUSG00000019889	ProperStrand	6	chr1	128147673	128147712	protein_coding	Nckap5	intron	ENSMUSG00000049690	NonProperStrand	10	1	-15.3358
chr18	5828285	5828375	DNA	RCHARR1	MER1_type	chr18RCHARR15827986	NonProperStrand	1	chr18	5829085	5829165	LINE	Lx8	L1	chr18Lx85828872	NonProperStrand	1	1	-inf
chr2	90395137	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr9	15313803	15315321	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	14	-10.8703
chr13	95330636	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	chr12	105031169	105031226	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-5.9522
chr14	52209856	52209895	pseudogene	Gm17174	.	ENSMUSG00000091036	ProperStrand	4	chr16	23110837	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr2	5379276	5379346	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr16	23110456	23110506	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	2	-5.1905
chr11	109011748	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	12076891	12076908	SINE	B3	B2	chrXB312076728	ProperStrand	2	1	-7.3577
chr17	39847442	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	132352895	132352982	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	13	-4.3147
chr17	39847134	39847160	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	74357827	74357853	protein_coding-noncoding	Ahrr	utr3	ENSMUSG00000021575	NonProperStrand	1	1	-inf
chr15	51967831	51967847	LTR	MTE2b	MaLR	chr15MTE2b51967809	ProperStrand	1	chr4	132309952	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr3	31447123	31447213	LINE	L1Md_F2	L1	chr3L1Md_F231445922	ProperStrand	1	chr18	66359756	66359836	protein_coding	Ccbe1	intron	ENSMUSG00000046318	ProperStrand	6	1	-inf
chr10	91130548	91130628	LINE	L1MB7	L1	chr10L1MB791130569	ProperStrand	1	chr10	91130094	91130184	LINE	Lx8	L1	chr10Lx891129835	ProperStrand	1	1	-inf
chr4	116664042	116665429	protein_coding-noncoding	Urod	utr3	ENSMUSG00000028684	ProperStrand	2	chr4	116664272	116665541	protein_coding	Urod	exon	ENSMUSG00000028684	ProperStrand	2	2	-inf
chr18	54699170	54699222	Simple_repeat	(TGGA)n	Simple_repeat	chr18(TGGA)n54699160	NonProperStrand	4	chr11	72738372	72739996	protein_coding	Zzef1	utr3	ENSMUSG00000055670	ProperStrand	1	1	-inf
chr17	50920584	50920600	protein_coding	Tbc1d5	intron	ENSMUSG00000023923	NonProperStrand	27	chr2	158359866	158359916	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-6.9368
chr2	164046009	164046099	protein_coding	Wfdc15b	intron	ENSMUSG00000018211	ProperStrand	3	chr19	24261564	24261644	protein_coding	Tjp2	intron	ENSMUSG00000024812	ProperStrand	4	1	-18.9366
chr11	109011748	109011782	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	84009531	84009549	protein_coding	Rgs6	intron	ENSMUSG00000021219	ProperStrand	8	1	-4.1268
chr8	77436733	77436823	LINE	L2c	L2	chr8L2c77436714	ProperStrand	1	chr8	77436593	77436673	LTR	MTD	MaLR	chr8MTD77436408	NonProperStrand	1	1	-inf
chr13	34921072	34921162	LTR	RMER10B	ERVL	chr13RMER10B34921070	NonProperStrand	1	chr13	34921315	34921395	Simple_repeat	(TCC)n	Simple_repeat	chr13(TCC)n34921273	NonProperStrand	1	1	-inf
chr11	68732629	68732709	LINE	L1MA8	L1	chr11L1MA868732585	ProperStrand	1	chr11	68732789	68732879	SINE	B3	B2	chr11B368732740	NonProperStrand	1	1	-inf
chr2	22744887	22744914	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr14	34152352	34152370	protein_coding	Arhgap22	intron	ENSMUSG00000063506	ProperStrand	3	1	-13.3414
chr12	92941850	92941940	protein_coding-noncoding	Ston2	utr3	ENSMUSG00000020961	ProperStrand	1	chr12	92942322	92942402	protein_coding	Ston2	intron	ENSMUSG00000020961	ProperStrand	2	1	-inf
chrX	74272483	74272566	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr2	120042231	120042248	protein_coding	Pla2g4e	intron	ENSMUSG00000050211	NonProperStrand	8	1	-11.2541
chr17	39847194	39847216	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	28528386	28528456	protein_coding-noncoding	Tsc1	utr5	ENSMUSG00000026812	ProperStrand	1	1	-inf
chr2	158356473	158356540	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	chr16	23110478	23110510	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-6.1038
chr5	121205025	121205142	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr13	44869576	44870018	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	5	-3.7594
chr4	10899205	10899221	LTR	MTD	MaLR	chr4MTD10899172	NonProperStrand	4	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-8.4601
chr11	106501273	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr19	38035746	38035765	protein_coding	Myof	intron	ENSMUSG00000048612	NonProperStrand	2	1	-11.9816
chr6	33240178	33240195	protein_coding	Exoc4	intron	ENSMUSG00000029763	NonProperStrand	13	chr17	24719675	24719777	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-7.9717
chr11	69669655	69669729	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	chr16	23110457	23110510	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-4.2569
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	96127603	96127620	lincRNA	1600002D24Rik	intron	ENSMUSG00000086899	NonProperStrand	2	1	-7.3577
chr3	96176359	96176436	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr9	6646963	6646982	SINE	ID_B1	B4	chr9ID_B16646850	ProperStrand	1	1	-inf
chr17	39846835	39846870	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr12	24894021	24894144	Low_complexity	A-rich	Low_complexity	chr12A-rich24893997	ProperStrand	1	1	-inf
chr17	39847182	39847245	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr3	94363392	94363408	protein_coding	Snx27	intron	ENSMUSG00000028136	NonProperStrand	5	1	-6.3853
chr1	44983410	44983500	LINE	L1_Mur2	L1	chr1L1_Mur244983288	NonProperStrand	1	chr1	44983137	44983217	LINE	L1_Mus2	L1	chr1L1_Mus244982684	NonProperStrand	1	1	-inf
chr2	177478976	177479056	LINE	L1VL1	L1	chr2L1VL1177476150	NonProperStrand	3	chr15	26081780	26081870	SINE	B4A	B4	chr15B4A26081789	ProperStrand	1	1	-inf
chr11	109011677	109011712	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	105866366	105866491	processed_transcript	BC048594	.	ENSMUSG00000086131	NonProperStrand	2	1	-7.3577
chr4	130915050	130915140	LTR	MTE2a	MaLR	chr4MTE2a130915009	NonProperStrand	1	chr4	130914905	130914985	LTR	ORR1B2	MaLR	chr4ORR1B2130914648	NonProperStrand	1	1	-inf
chr12	56532779	56532859	SINE	B3	B2	chr12B356532718	ProperStrand	1	chr19	4353743	4353833	protein_coding	Kdm2a	intron	ENSMUSG00000054611	NonProperStrand	5	1	-inf
chr18	10052133	10052155	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr3	123507990	123508068	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	3	-8.0456
chr6	57508140	57508220	LINE	L1_Mur3	L1	chr6L1_Mur357507948	ProperStrand	1	chr19	9743837	9743927	SINE	B1_Mus2	Alu	chr19B1_Mus29743847	ProperStrand	1	1	-inf
chrX	92230734	92230814	LINE	L1_Mur3	L1	chrXL1_Mur392230692	ProperStrand	1	chrX	92230568	92230658	LTR	RLTR9F	ERVK	chrXRLTR9F92230240	NonProperStrand	1	1	-inf
chr5	146261174	146261193	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr16	32679644	32679741	protein_coding	Tnk2	exon	ENSMUSG00000022791	ProperStrand	8	1	-6.6207
chr17	39847129	39847206	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr15	85925434	85925451	protein_coding	Gramd4	intron	ENSMUSG00000035900	ProperStrand	1	1	-inf
chr11	62220270	62220350	protein_coding	Ncor1	intron	ENSMUSG00000018501	NonProperStrand	6	chr10	34137213	34137303	protein_coding	Nt5dc1	intron	ENSMUSG00000039480	ProperStrand	2	1	-19.1249
chr2	32963283	32963373	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr2	158356421	158359885	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	2	-4.3204
chr8	70895758	70895833	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr6	47788074	47788105	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	4	1	-9.4061
chr15	40655441	40655505	protein_coding	Zfpm2	intron	ENSMUSG00000022306	ProperStrand	5	chr19	8888597	8888676	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-8.6536
chr9	112185765	112185919	lincRNA	2900079G21Rik	intron	ENSMUSG00000087038	NonProperStrand	3	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-9.1493
chr1	39368248	39370044	protein_coding	Npas2	intron	ENSMUSG00000026077	ProperStrand	8	chr5	121205043	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-7.6997
chr17	39847277	39847300	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr18	25234886	25234904	protein_coding	Fhod3	intron	ENSMUSG00000034295	ProperStrand	8	1	-5.3820
chr10	76614533	76614583	protein_coding	Col18a1	intron	ENSMUSG00000001435	ProperStrand	12	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-6.0939
chr13	112578228	112578295	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr6	125121785	125121807	protein_coding	Ncapd2	intron	ENSMUSG00000038252	NonProperStrand	10	1	-6.5461
chr16	23111342	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	1	-5.4552
chr13	27373519	27373609	LTR	RLTR26	ERVK	chr13RLTR2627373089	ProperStrand	1	chr14	33967730	33967810	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	1	-inf
chr8	53681093	53681110	LINE	L1Md_A	L1	chr8L1Md_A53680192	NonProperStrand	24	chr5	142970530	142970549	protein_coding	Radil	intron	ENSMUSG00000029576	NonProperStrand	1	1	-inf
chr17	39847610	39847632	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	113414246	113414266	protein_coding	Il17re	intron	ENSMUSG00000043088	ProperStrand	2	1	-6.4812
chr11	115490390	115490480	SINE	B1_Mm	Alu	chr11B1_Mm115490403	NonProperStrand	1	chr11	115490682	115490762	SINE	B2_Mm2	B2	chr11B2_Mm2115490591	ProperStrand	1	1	-inf
chr2	156991940	156991959	protein_coding	Rbl1	intron	ENSMUSG00000027641	NonProperStrand	4	chr13	97190551	97190624	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.1245
chr1	161035404	161035456	LINE	L1MEc	L1	chr1L1MEc161035269	ProperStrand	33	chr9	20642415	20642511	SINE	B4A	B4	chr9B4A20642364	ProperStrand	1	1	-inf
chr17	39846974	39846998	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	32887904	32887973	protein_coding	Lyrm2	intron	ENSMUSG00000045854	NonProperStrand	1	1	-inf
chr2	173231635	173231715	Simple_repeat	(CA)n	Simple_repeat	chr2(CA)n173231618	ProperStrand	1	chr2	173231771	173231861	Simple_repeat	(GA)n	Simple_repeat	chr2(GA)n173231759	ProperStrand	1	1	-inf
chr9	110657879	110657969	SINE	B3	B2	chr9B3110657863	NonProperStrand	1	chr9	110657731	110657811	SINE	ID_B1	B4	chr9ID_B1110657695	NonProperStrand	1	1	-inf
chr5	114851974	114852028	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr11	117077242	117077332	protein_coding	Sept9	intron	ENSMUSG00000059248	ProperStrand	23	1	-5.3474
chr3	123507994	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr17	24528524	24528552	protein_coding	Abca3	intron	ENSMUSG00000024130	ProperStrand	10	1	-6.1771
chr3	123507992	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr17	75019364	75019382	protein_coding	Birc6	intron	ENSMUSG00000024073	ProperStrand	5	1	-7.6581
chr18	57547047	57547125	lincRNA	4930511M06Rik	intron	ENSMUSG00000086607	ProperStrand	8	chr3	114668891	114668981	protein_coding	Olfm3	intron	ENSMUSG00000027965	NonProperStrand	1	1	-inf
chr11	69415301	69415391	protein_coding-noncoding	Atp1b2	utr3	ENSMUSG00000041329	NonProperStrand	1	chr11	69415047	69415127	protein_coding	Atp1b2	exon	ENSMUSG00000041329	NonProperStrand	1	1	-inf
chr1	126959143	126959233	LTR	ORR1A3-int	MaLR	chr1ORR1A3-int126959132	NonProperStrand	1	chr1	126959015	126959095	LTR	ORR1A3	MaLR	chr1ORR1A3126958784	NonProperStrand	1	1	-inf
chr17	57637301	57637391	LINE	L1Md_F3	L1	chr17L1Md_F357632747	NonProperStrand	1	chr17	57637569	57637649	LINE	L1Md_F3	L1	chr17L1Md_F357637561	NonProperStrand	1	1	-inf
chr4	123291355	123291416	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr8	126944901	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-5.0646
chr3	34883465	34883545	LTR	ORR1A1-int	MaLR	chr3ORR1A1-int34883430	NonProperStrand	1	chr3	34379242	34379332	non_coding	Sox2ot	.	ENSMUSG00000090828	ProperStrand	6	1	-inf
chr17	39846830	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr5	65697956	65698079	protein_coding	Rfc1	intron	ENSMUSG00000029191	NonProperStrand	1	1	-inf
mmu-miR-6240	3	24	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr1	167350266	167350284	protein_coding	Dcaf6	exon	ENSMUSG00000026571	ProperStrand	9	1	-10.0674
chr7	77839705	77839795	Low_complexity	CT-rich	Low_complexity	chr7CT-rich77839690	NonProperStrand	1	chr7	77839838	77839918	SINE	B1F1	Alu	chr7B1F177839847	ProperStrand	1	1	-inf
chr16	8485918	8485998	protein_coding-noncoding	Mettl22	utr5	ENSMUSG00000039345	NonProperStrand	2	chr16	8485583	8485673	protein_coding	Mettl22	intron	ENSMUSG00000039345	NonProperStrand	1	1	-inf
chr14	49751477	49751493	SINE	B2_Mm2	B2	chr14B2_Mm249751432	NonProperStrand	2	chr13	44869934	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chr6	42679126	42679196	LINE	Lx6	L1	chr6Lx642679010	ProperStrand	1	chr17	39847263	39847348	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-inf
chr16	73566700	73566790	LINE	Lx8	L1	chr16Lx873566562	NonProperStrand	1	chr16	73566092	73566172	LTR	MTD	MaLR	chr16MTD73566021	NonProperStrand	1	1	-inf
chr11	98455282	98455298	SINE	B2_Mm2	B2	chr11B2_Mm298455199	NonProperStrand	1	chr16	23110835	23110865	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr13	97190551	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr7	127527968	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-4.4717
chr9	74281868	74281884	SINE	B1_Mur4	Alu	chr9B1_Mur474281772	NonProperStrand	2	chr18	10706064	10706545	protein_coding	Abhd3	exon	ENSMUSG00000002475	NonProperStrand	1	1	-inf
chr15	3971640	3971720	LTR	ORR1D2-int	MaLR	chr15ORR1D2-int3971558	NonProperStrand	2	chr15	3971777	3971868	lincRNA	BC037032	exon	ENSMUSG00000087221	NonProperStrand	2	2	-inf
chr7	84255947	84256038	LINE	Lx3_Mus	L1	chr7Lx3_Mus84254269	NonProperStrand	2	chr7	84038219	84038299	Low_complexity	T-rich	Low_complexity	chr7T-rich84038221	ProperStrand	2	2	-inf
chr14	63157466	63157556	LTR	ORR1D1-int	MaLR	chr14ORR1D1-int63157429	ProperStrand	1	chr14	63157262	63157342	Simple_repeat	(TTC)n	Simple_repeat	chr14(TTC)n63157284	ProperStrand	1	1	-inf
chr17	24719688	24719778	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr5	107907371	107907446	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-3.1844
chr17	39845417	39845441	LINE	L1_Mm	L1	chr17L1_Mm39845135	NonProperStrand	43	chr2	180735054	180735184	protein_coding	Col20a1	exon	ENSMUSG00000016356	NonProperStrand	1	1	-inf
chr1	7309956	7310036	LTR	ORR1D2	MaLR	chr1ORR1D27309847	NonProperStrand	1	chr1	7309704	7309794	LTR	RLTR9A	ERVK	chr1RLTR9A7309515	NonProperStrand	1	1	-inf
chr4	81445034	81445055	LINE	L1_Mm	L1	chr4L1_Mm81444938	NonProperStrand	11	chr11	109012014	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	1	-8.9948
chr10	95661677	95661767	LTR	IAPEz-int	ERVK	chr10IAPEz-int95655521	ProperStrand	1	chr10	95661975	95662055	LTR	IAPLTR1a_Mm	ERVK	chr10IAPLTR1a_Mm95661984	ProperStrand	1	1	-inf
chr1	99503170	99503260	LINE	Lx9	L1	chr1Lx999503063	ProperStrand	1	chr1	99503349	99503429	Simple_repeat	(CATATA)n	Simple_repeat	chr1(CATATA)n99503265	NonProperStrand	1	1	-inf
chr11	99017070	99017104	LTR	RLTR25B	ERVK	chr11RLTR25B99017055	ProperStrand	18	chr8	12757419	12757436	protein_coding	Atp11a	intron	ENSMUSG00000031441	ProperStrand	39	1	-10.2164
chr9	50847099	50847179	DNA	RCHARR1	MER1_type	chr9RCHARR150846983	NonProperStrand	1	chr9	50846799	50846889	SINE	B2_Mm2	B2	chr9B2_Mm250846789	ProperStrand	1	1	-inf
chr7	141448808	141448903	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr2	90395137	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	4	-7.7143
chr1	136364891	136364953	protein_coding	Klhl12	intron	ENSMUSG00000026455	ProperStrand	10	chr16	23110835	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-4.9306
chr11	106501274	106501324	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr2	166570435	166570452	SINE	ID	ID	chr2ID166570380	NonProperStrand	1	1	-inf
chr3	138108302	138108392	protein_coding-noncoding	Adh5	utr5	ENSMUSG00000028138	ProperStrand	1	chr3	138108070	138108150	protein_coding	Adh5	intron	ENSMUSG00000028138	ProperStrand	1	1	-inf
chr3	157947417	157947516	protein_coding	Lrrc7	intron	ENSMUSG00000028176	ProperStrand	9	chr16	56189933	56189950	protein_coding	Senp7	utr3	ENSMUSG00000052917	NonProperStrand	1	1	-inf
chr6	78653354	78653434	LINE	Lx9	L1	chr6Lx978652956	ProperStrand	1	chr6	78653561	78653651	LTR	RLTR13B4	ERVK	chr6RLTR13B478653579	NonProperStrand	1	1	-inf
chr16	38532466	38532546	protein_coding-noncoding	Poglut1	utr3	ENSMUSG00000034064	NonProperStrand	1	chr16	38532650	38532740	protein_coding	Poglut1	intron	ENSMUSG00000034064	NonProperStrand	1	1	-inf
chr12	86731277	86731367	SINE	B1F1	Alu	chr12B1F186731235	NonProperStrand	1	chr12	86731384	86731464	SINE	B1_Mus1	Alu	chr12B1_Mus186731366	NonProperStrand	1	1	-inf
chr1	63269503	63269593	SINE	B1_Mm	Alu	chr1B1_Mm63269498	NonProperStrand	1	chr1	63269373	63269453	SINE	B4A	B4	chr1B4A63269229	ProperStrand	1	1	-inf
chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr13	49684377	49684433	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-3.3516
chr10	123371325	123371415	LINE	Lx5	L1	chr10Lx5123368191	ProperStrand	1	chr10	123371697	123371777	LTR	ORR1A4	MaLR	chr10ORR1A4123371487	ProperStrand	1	1	-inf
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr4	126563970	126566490	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	2	-8.3670
chr17	39846387	39847243	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	39847058	39847415	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	105	-inf
chr12	99645565	99645655	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr4	56897637	56897717	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-8.4028
chr2	167065290	167065333	protein_coding	Ptgis	intron	ENSMUSG00000017969	NonProperStrand	6	chr8	75030586	75030604	protein_coding	Med26	intron	ENSMUSG00000045248	ProperStrand	3	1	-18.0454
chr13	44869602	44869666	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr14	10983425	10983443	protein_coding	Fhit	intron	ENSMUSG00000060579	ProperStrand	20	1	-4.8073
chrX	4136307	4136361	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	chr9	123461839	123462167	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	3	-8.0531
chr2	90853081	90854956	protein_coding	Celf1	utr3	ENSMUSG00000005506	ProperStrand	4	chr9	123461967	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-6.4942
chr12	99645566	99645656	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	2	-5.7104
chr18	40736145	40736225	LINE	L1Md_F2	L1	chr18L1Md_F240736106	ProperStrand	1	chr18	40735855	40735945	LINE	Lx	L1	chr18Lx40735289	ProperStrand	1	1	-inf
chr11	109011654	109011878	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr17	39847065	39847346	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	47	-9.8135
chr6	49512043	49512133	LTR	MLT1A0	MaLR	chr6MLT1A049512020	ProperStrand	2	chr6	49511885	49511965	SINE	B4	B4	chr6B449511690	NonProperStrand	2	2	-inf
chr5	114852016	114852035	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr19	8252250	8252279	protein_coding	Slc22a29	intron	ENSMUSG00000075044	ProperStrand	16	1	-6.0726
chr4	9639247	9639276	LTR	RLTR10-int	ERVK	chr4RLTR10-int9639205	NonProperStrand	1	chr9	15315221	15315266	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr2	22744850	22744900	LINE	L1_Mus1	L1	chr2L1_Mus122744210	ProperStrand	58	chr13	95330598	95330683	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	1	-5.8831
chr16	88847391	88847471	LINE	Lx3A	L1	chr16Lx3A88847344	ProperStrand	1	chr16	88846986	88847076	Other	RMER1C	Other	chr16RMER1C88846393	NonProperStrand	1	1	-inf
chr11	29545155	29545235	lincRNA	Gm12092	intron	ENSMUSG00000084850	ProperStrand	1	chr7	127226316	127226406	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	9	1	-inf
chr2	157145546	157145626	protein_coding-noncoding	Rpn2	utr5	ENSMUSG00000027642	NonProperStrand	1	chr2	157145384	157145474	protein_coding	Rpn2	intron	ENSMUSG00000027642	NonProperStrand	1	1	-inf
chr5	143564844	143564924	protein_coding	Tnrc18	intron	ENSMUSG00000039477	NonProperStrand	3	chr5	143564101	143564191	protein_coding	Tnrc18	intron	ENSMUSG00000039477	ProperStrand	3	1	-19.6922
chr7	134945910	134945990	protein_coding-noncoding	Hsd3b7	utr5	ENSMUSG00000042289	NonProperStrand	1	chr7	134945789	134945879	protein_coding	Hsd3b7	exon	ENSMUSG00000042289	NonProperStrand	1	1	-inf
chr15	34440790	34440921	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr19	8888537	8888674	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	4	-6.2771
chr11	30657024	30657104	LTR	ETnERV2-int	ERVK	chr11ETnERV2-int30656277	ProperStrand	1	chr17	8379793	8379883	protein_coding	Fgfr1op	intron	ENSMUSG00000069135	NonProperStrand	1	1	-inf
chr17	39847244	39847334	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr15	78778217	78778261	protein_coding	Triobp	utr5	ENSMUSG00000033088	NonProperStrand	2	1	-8.6616
chr17	24720853	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr8	70906062	70906107	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	NonProperStrand	5	1	-8.7338
chr5	75617504	75617592	DNA	MER5B	MER1_type	chr5MER5B75617510	ProperStrand	1	chr5	75617694	75617773	LTR	RLTR15	ERVK	chr5RLTR1575617671	NonProperStrand	1	1	-inf
chr5	142804912	142805002	LTR	RMER15	ERVL	chr5RMER15142804915	ProperStrand	1	chr5	142805193	142805273	LTR	RMER15	ERVL	chr5RMER15142805211	ProperStrand	1	1	-inf
chr4	132352442	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr8	3803290	3803332	misc_RNA	RNaseP_nuc	.	ENSMUSG00000088025	ProperStrand	27	1	-5.7115
chr11	109011747	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	38158007	38158085	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	2	-4.1843
chr17	39847346	39847381	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	77778523	77778618	protein_coding	Rnf165	intron	ENSMUSG00000025427	NonProperStrand	6	1	-3.8783
chr17	39846475	39846994	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	152567421	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	13	2	-5.0888
chr8	84772129	84772219	LTR	LTR37B	ERV1	chr8LTR37B84772094	NonProperStrand	2	chr2	90395148	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-8.9527
chr11	109011748	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr11	80138011	80138027	protein_coding	Rhbdl3	intron	ENSMUSG00000017692	ProperStrand	19	2	-4.4636
chr15	64477608	64477626	LINE	Lx7	L1	chr15Lx764476705	ProperStrand	5	chr13	55498962	55499007	SINE	B1_Mur2	Alu	chr13B1_Mur255498886	NonProperStrand	1	1	-inf
chr1	36090291	36090391	LTR	MERVL-int	ERVL	chr1MERVL-int36088814	ProperStrand	1	chr16	94121151	94121169	protein_coding	Sim2	intron	ENSMUSG00000062713	ProperStrand	12	1	-inf
chrX	74272495	74272566	SINE	B3	B2	chrXB374272477	ProperStrand	54	chr6	127150695	127150773	lincRNA	9330179D12Rik	intron	ENSMUSG00000084922	NonProperStrand	2	1	-14.5832
chr14	123485100	123485180	LINE	L1MEd	L1	chr14L1MEd123485114	ProperStrand	1	chr14	123485272	123485362	LINE	Lx5	L1	chr14Lx5123485252	NonProperStrand	1	1	-inf
chr17	39846821	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	120553008	120553958	protein_coding	Rims3	intron	ENSMUSG00000032890	ProperStrand	10	1	-3.3657
chr11	69453312	69453328	protein_coding	Fxr2	intron	ENSMUSG00000018765	NonProperStrand	6	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-7.3053
chr8	78506157	78506247	protein_coding	1700007B14Rik	intron	ENSMUSG00000031620	NonProperStrand	16	chr8	75217071	75217151	protein_coding	Nwd1	utr3	ENSMUSG00000048148	ProperStrand	1	1	-inf
chr2	73793813	73793903	LINE	L1MC1	L1	chr2L1MC173793489	ProperStrand	1	chr2	73793967	73794047	Simple_repeat	(TC)n	Simple_repeat	chr2(TC)n73793983	NonProperStrand	1	1	-inf
chr8	5373094	5373174	SINE	B4	B4	chr8B45372926	NonProperStrand	1	chr8	5373674	5373764	SINE	B4	B4	chr8B45373601	ProperStrand	1	1	-inf
chr2	121655399	121655479	LTR	RLTR1B	ERV1	chr2RLTR1B121655395	ProperStrand	1	chr2	121655603	121655693	LTR	RLTR1B	ERV1	chr2RLTR1B121655494	ProperStrand	1	1	-inf
chr2	73012739	73012763	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	17	chr13	97190541	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.0645
chr11	20112667	20112688	protein_coding	Rab1	intron	ENSMUSG00000020149	ProperStrand	4	chr6	115807979	115808069	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-11.6138
chr5	146261278	146261336	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr15	62166445	62166525	lincRNA	Pvt1	intron	ENSMUSG00000072566	ProperStrand	8	1	-9.7883
chr17	62881954	62882034	Other	RMER1B	Other	chr17RMER1B62881768	NonProperStrand	1	chr18	36683141	36683231	Simple_repeat	(CA)n	Simple_repeat	chr18(CA)n36682985	ProperStrand	1	1	-inf
chr14	75847904	75847984	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	2	-3.1130
chr5	146261063	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	106501272	106501324	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	4	-4.3440
chr11	55482699	55482774	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr2	90395143	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	4	-5.4022
chr11	119416049	119416129	lincRNA	Gm11762	intron	ENSMUSG00000087675	NonProperStrand	1	chr13	42202926	42203016	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	13	1	-inf
chr17	34950982	34952269	processed_transcript	C4a	.	ENSMUSG00000015451	ProperStrand	52	chr19	8888596	8888687	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	2	-6.5754
chr2	130276333	130276362	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	chr3	135840186	135840203	protein_coding	Bank1	intron	ENSMUSG00000037922	ProperStrand	1	1	-inf
chr1	93750628	93750675	LINE	L1MD1	L1	chr1L1MD193749946	NonProperStrand	2	chr1	93754504	93754594	Simple_repeat	(CAGAGA)n	Simple_repeat	chr1(CAGAGA)n93754506	NonProperStrand	2	2	-inf
chr11	39729338	39729428	LINE	Lx2B	L1	chr11Lx2B39729346	ProperStrand	1	chr11	39870517	39870597	lincRNA	Gm12132	intron	ENSMUSG00000085301	NonProperStrand	2	1	-inf
chr17	50110498	50110588	LTR	RLTR25B	ERVK	chr17RLTR25B50110453	NonProperStrand	1	chr17	50110762	50110842	LTR	RMER17C	ERVK	chr17RMER17C50110773	ProperStrand	1	1	-inf
chr17	39847061	39847406	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr17	39847330	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	95	-22.2410
chr8	126944899	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	chr16	23110835	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	7	-6.9523
chr1	122357167	122357224	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr4	123291341	123291416	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-5.3976
chr11	83584848	83584867	protein_coding	Heatr6	intron	ENSMUSG00000000976	NonProperStrand	4	chr16	19883803	19883925	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-11.3795
chr9	120130429	120130508	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr2	90395141	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	4	-3.2558
chr6	84517340	84517430	SINE	B1_Mur1	Alu	chr6B1_Mur184517325	ProperStrand	2	chr6	84517197	84517277	SINE	B3A	B2	chr6B3A84517102	ProperStrand	2	2	-inf
chr3	123507965	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr18	57354824	57354843	protein_coding	Megf10	intron	ENSMUSG00000024593	NonProperStrand	7	2	-11.3885
chr13	8322570	8322660	protein_coding	Adarb2	intron	ENSMUSG00000052551	NonProperStrand	6	chr13	8531909	8531989	protein_coding	Adarb2	intron	ENSMUSG00000052551	ProperStrand	8	1	-15.8088
chr15	36999027	36999045	DNA	MER81	AcHobo	chr15MER8136998990	ProperStrand	1	chr5	121205023	121205143	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-inf
chr11	6620338	6620428	LTR	RMER13B	ERVK	chr11RMER13B6620323	NonProperStrand	35	chr4	132352441	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	1	-5.2003
chr11	17896672	17896752	LINE	L1M5	L1	chr11L1M517896693	NonProperStrand	1	chr11	17896862	17896952	LTR	ORR1A2	MaLR	chr11ORR1A217896884	ProperStrand	1	1	-inf
chr5	146261266	146261285	Simple_repeat	(T)n	Simple_repeat	chr5(T)n146261247	ProperStrand	41	chr6	51922318	51922334	protein_coding	Skap2	intron	ENSMUSG00000059182	NonProperStrand	3	1	-14.0423
chr11	17221286	17221330	SINE	MIR	MIR	chr11MIR17221193	NonProperStrand	7	chr5	114852015	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-7.7889
chr2	25982055	25982135	LTR	RMER6A	ERVK	chr2RMER6A25982024	ProperStrand	1	chr2	25981847	25981937	SINE	ID_B1	B4	chr2ID_B125981782	ProperStrand	1	1	-inf
chr9	123461828	123462019	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	99904793	99904810	protein_coding	Ror1	intron	ENSMUSG00000035305	NonProperStrand	16	2	-6.2262
chr11	65529493	65529511	protein_coding	Map2k4	intron	ENSMUSG00000033352	ProperStrand	4	chr2	5379295	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-7.6968
chr17	39847477	39847549	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	55498575	55499252	protein_coding	Vti1a	intron	ENSMUSG00000024983	ProperStrand	8	1	-3.3062
chr5	114851973	114852028	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr10	80417219	80417322	pseudogene	Gm3828	.	ENSMUSG00000083808	NonProperStrand	6	1	-8.1224
chr6	79430208	79430298	LINE	L1_Mus3	L1	chr6L1_Mus379430085	NonProperStrand	1	chr6	79430002	79430082	LINE	Lx8	L1	chr6Lx879429977	NonProperStrand	1	1	-inf
chr3	152346855	152346935	Simple_repeat	(TTC)n	Simple_repeat	chr3(TTC)n152346783	ProperStrand	1	chr3	152346966	152347056	Simple_repeat	(TTC)n	Simple_repeat	chr3(TTC)n152346979	ProperStrand	1	1	-inf
chr17	4082475	4082555	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	21	chr13	64233566	64233656	SINE	PB1D9	Alu	chr13PB1D964233563	NonProperStrand	1	1	-inf
chr17	4082339	4082419	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	21	chr5	41465166	41465256	LINE	Lx	L1	chr5Lx41464879	ProperStrand	1	1	-inf
chr1	43695118	43695208	LINE	L1_Mur3	L1	chr1L1_Mur343695094	NonProperStrand	1	chr1	43695462	43695542	LINE	L1_Mus2	L1	chr1L1_Mus243695247	ProperStrand	1	1	-inf
chr17	39846776	39846838	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr6	122728143	122728243	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	2	1	-7.0123
chr8	116956442	116956471	LTR	ORR1D2	MaLR	chr8ORR1D2116956410	ProperStrand	1	chr8	116952928	116954719	SINE	B2_Mm2	B2	chr8B2_Mm2116952940	ProperStrand	1	1	-inf
chr2	90395158	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr3	116489183	116489199	protein_coding	Agl	intron	ENSMUSG00000033400	ProperStrand	7	2	-9.9095
mmu-miR-6240	2	23	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr1	71618630	71619387	protein_coding	Atic	intron	ENSMUSG00000026192	NonProperStrand	4	1	-11.8556
chr1	183194032	183194122	LTR	IAPEz-int	ERVK	chr1IAPEz-int183194008	NonProperStrand	1	chr1	183193843	183193923	LTR	IAPLTR1a_Mm	ERVK	chr1IAPLTR1a_Mm183193656	NonProperStrand	1	1	-inf
chr13	97190568	97190588	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr16	57627967	57628050	protein_coding	Col8a1	exon	ENSMUSG00000068196	ProperStrand	1	1	-inf
chr9	123461826	123462034	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr16	23111374	23111431	snoRNA	ENSMUSG00000064382_SNORA63	.	ENSMUSG00000064382	ProperStrand	51	4	-6.6091
chr11	109011794	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	5170738	5170754	LINE	Lx4B	L1	chr1Lx4B5169206	NonProperStrand	11	1	-3.5018
chr6	42267504	42267594	protein_coding	Fam131b	utr3	ENSMUSG00000029861	NonProperStrand	2	chr6	42265104	42265184	protein_coding	Clcn1	utr3	ENSMUSG00000029862	ProperStrand	2	1	-21.5566
chrX	166438309	166438399	protein_coding	Mid1	intron	ENSMUSG00000035299	NonProperStrand	3	chrX	164474046	164474126	protein_coding	Frmpd4	intron	ENSMUSG00000049176	ProperStrand	10	1	-16.9469
chr3	62159319	62159346	protein_coding	Arhgef26	intron	ENSMUSG00000036885	ProperStrand	16	chr13	97190562	97190621	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-5.1850
chr11	6528104	6528166	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr1	20888911	20888929	protein_coding	Paqr8	intron	ENSMUSG00000025931	ProperStrand	2	1	-13.1511
chr15	80078519	80078588	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	chr17	24719682	24719772	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-5.0488
chr4	132352442	132352523	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr5	30918321	30918388	protein_coding	Kcnk3	intron	ENSMUSG00000049265	ProperStrand	4	1	-9.7326
chr17	39846818	39846845	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	134454891	134454910	protein_coding	Tmem50a	intron	ENSMUSG00000028822	ProperStrand	1	1	-inf
chr14	49663866	49663887	protein_coding	Exoc5	intron	ENSMUSG00000061244	ProperStrand	1	chr18	67401393	67401511	protein_coding	Mppe1	intron	ENSMUSG00000062526	ProperStrand	1	1	-inf
chr16	11144061	11144154	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chr9	118674952	118675012	protein_coding	Itga9	intron	ENSMUSG00000039115	ProperStrand	7	1	-11.8650
chr16	23110391	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr12	105031235	105031335	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	2	-3.6901
chr9	123461882	123461931	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	chr8	81873936	81873958	protein_coding	Smad1	intron	ENSMUSG00000031681	ProperStrand	1	1	-inf
chr10	122565812	122565902	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	9	chr18	23730268	23730348	protein_coding	Dtna	intron	ENSMUSG00000024302	ProperStrand	1	1	-inf
chr4	107064386	107064467	protein_coding	Tmem48	intron	ENSMUSG00000028614	NonProperStrand	3	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-8.9012
chr17	39846605	39846694	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr17	39848099	39848153	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	1	-6.6952
chr1	161035854	161035876	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	8	chr8	126944846	126944968	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-9.1772
chr15	34440845	34440869	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr2	79292500	79292517	protein_coding	Cerkl	intron	ENSMUSG00000075256	ProperStrand	13	1	-7.5544
chr8	119329820	119329910	Other	RMER1B	Other	chr8RMER1B119329533	NonProperStrand	1	chr8	119330002	119330082	Other	RMER1B	Other	chr8RMER1B119329979	NonProperStrand	1	1	-inf
chr14	33968116	33968196	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	chr7	129597616	129597706	protein_coding	Prkcb	intron	ENSMUSG00000052889	NonProperStrand	4	1	-14.2746
chr13	44869932	44870023	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr11	113901597	113901613	protein_coding	Sdk2	intron	ENSMUSG00000041592	NonProperStrand	43	1	-3.3516
chr16	20681570	20681793	protein_coding-noncoding	Eif4g1	utr5	ENSMUSG00000045983	ProperStrand	1	chr5	122800526	122800575	protein_coding	Rad9b	intron	ENSMUSG00000038569	ProperStrand	2	1	-inf
chr12	99645567	99645668	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr12	21112161	21168211	protein_coding	Asap2	intron	ENSMUSG00000052632	ProperStrand	7	1	-11.9548
chr17	12919636	12919718	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	56	chr16	23110837	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	2	-3.2862
chr1	151355174	151355191	LTR	IAPEz-int	ERVK	chr1IAPEz-int151353776	NonProperStrand	1	chr5	107905205	107905308	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-inf
chr5	146260994	146261228	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr2	130276236	130276369	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	8	-9.1359
chr10	40258612	40258666	LINE	L1Md_F2	L1	chr10L1Md_F240258082	NonProperStrand	23	chr16	23111315	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-3.6086
chr10	19007248	19007338	LINE	L1_Mur3	L1	chr10L1_Mur319007161	NonProperStrand	1	chr10	19006996	19007076	SINE	B3	B2	chr10B319006987	NonProperStrand	1	1	-inf
chr4	147271661	147271751	protein_coding	Mfn2	intron	ENSMUSG00000029020	ProperStrand	1	chr7	10513934	10514014	protein_coding	Vmn2r48	intron	ENSMUSG00000091544	NonProperStrand	1	1	-inf
chr6	15543314	15543394	LINE	L1_Mus3	L1	chr6L1_Mus315543201	ProperStrand	1	chr6	15543038	15543128	LINE	Lx3A	L1	chr6Lx3A15542762	ProperStrand	1	1	-inf
chr10	111987592	111987672	LINE	L1_Mm	L1	chr10L1_Mm111987489	NonProperStrand	1	chr9	52074483	52074573	LTR	MTE2a	MaLR	chr9MTE2a52074508	NonProperStrand	1	1	-inf
chr14	77260036	77260126	LINE	L1_Mur3	L1	chr14L1_Mur377259143	ProperStrand	1	chr14	77260295	77260375	LTR	MTC	MaLR	chr14MTC77260231	NonProperStrand	1	1	-inf
chr12	78350926	78351016	protein_coding	Fut8	intron	ENSMUSG00000021065	NonProperStrand	2	chr9	123462023	123462103	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	1	-15.9886
chr16	72687054	72687144	protein_coding	Robo1	intron	ENSMUSG00000022883	NonProperStrand	5	chr16	72698316	72698396	protein_coding	Robo1	intron	ENSMUSG00000022883	ProperStrand	3	1	-18.4526
chr14	19805398	19805913	Other	RMER1B	Other	chr14RMER1B19805526	NonProperStrand	1	chr2	90395134	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr17	39847675	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr15	27697383	27697407	protein_coding	Trio	intron	ENSMUSG00000022263	NonProperStrand	2	1	-6.4812
chr4	78773861	78773885	LINE	Lx5	L1	chr4Lx578773853	ProperStrand	1	chr2	90395142	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr2	128443768	128443848	protein_coding-noncoding	Anapc1	utr3	ENSMUSG00000014355	NonProperStrand	1	chr2	128443921	128444011	protein_coding	Anapc1	intron	ENSMUSG00000014355	NonProperStrand	1	1	-inf
chr3	11635624	11635640	LINE	L1_Mus2	L1	chr3L1_Mus211634166	ProperStrand	1	chr16	23110907	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr11	109011747	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	80078498	80078554	protein_coding	Smcr7l	intron	ENSMUSG00000022412	NonProperStrand	56	4	-4.3068
chr11	3175841	3175921	LINE	L1_Mur2	L1	chr11L1_Mur23175680	NonProperStrand	1	chr11	3175999	3176089	LTR	ORR1B2	MaLR	chr11ORR1B23175908	ProperStrand	1	1	-inf
chr18	35557196	35557219	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr1	131869591	131869608	protein_coding	Thsd7b	intron	ENSMUSG00000042581	NonProperStrand	21	1	-6.7374
chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr15	91701004	91701026	protein_coding	Muc19	intron	ENSMUSG00000044021	NonProperStrand	2	1	-9.9953
chr11	6528050	6528140	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr16	38158045	38158125	protein_coding	Gsk3b	intron	ENSMUSG00000022812	ProperStrand	21	1	-7.8214
chr4	29724404	29724421	LINE	Lx9	L1	chr4Lx929723414	ProperStrand	1	chr17	39847598	39847627	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	1	-inf
chr12	49789316	49789396	LINE	L1_Mur1	L1	chr12L1_Mur149789216	NonProperStrand	1	chr14	33967589	33967679	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	1	-inf
chr9	123461965	123461987	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr9	78480064	78480089	protein_coding	Cd109	intron	ENSMUSG00000046186	NonProperStrand	4	1	-6.4942
chr17	39847428	39848019	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	26	-3.4629
chr8	64756766	64756846	LINE	L1VL2	L1	chr8L1VL264756677	NonProperStrand	1	chr8	64756399	64756489	Simple_repeat	(TCTA)n	Simple_repeat	chr8(TCTA)n64756368	NonProperStrand	1	1	-inf
chr13	19463983	19463999	protein_coding	Stard3nl	intron	ENSMUSG00000003062	NonProperStrand	2	chr16	23110456	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-15.1400
chr17	35162562	35162689	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr13	44869606	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	3	-5.3959
chr8	22593830	22593848	LINE	L1VL1	L1	chr8L1VL122591510	NonProperStrand	1	chr17	39848099	39848160	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-inf
chr11	79022291	79022371	SINE	B3	B2	chr11B379022220	NonProperStrand	1	chr11	79022473	79022563	SINE	MIRb	MIR	chr11MIRb79022472	NonProperStrand	1	1	-inf
chr18	61066400	61066480	SINE	B4	B4	chr18B461066324	NonProperStrand	1	chr18	60812713	60812803	protein_coding	Synpo	intron	ENSMUSG00000043079	NonProperStrand	1	1	-inf
chr15	36605924	36608330	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	3	chr9	72925872	72925888	protein_coding	Rab27a	intron	ENSMUSG00000032202	NonProperStrand	3	1	-19.6922
chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	108486459	108486517	protein_coding	P4htm	intron	ENSMUSG00000006675	NonProperStrand	7	1	-4.3977
chr9	76532646	76532726	LTR	RLTR45	ERVK	chr9RLTR4576532279	ProperStrand	1	chr3	40702839	40702929	protein_coding	3110057O12Rik	intron	ENSMUSG00000037818	NonProperStrand	2	1	-inf
chr13	42214351	42214370	protein_coding	Hivep1	intron	ENSMUSG00000021366	ProperStrand	13	chr9	123461791	123461908	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	2	-6.8622
chr19	53903804	53903821	protein_coding	Rbm20	intron	ENSMUSG00000043639	ProperStrand	2	chr3	122489091	122489191	protein_coding	Pde5a	intron	ENSMUSG00000053965	ProperStrand	1	1	-inf
chr16	16505090	16505109	protein_coding	Fgd4	intron	ENSMUSG00000022788	ProperStrand	3	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-9.1493
chr14	69783952	69784034	antisense	1700092C10Rik	.	ENSMUSG00000092499	ProperStrand	1	chr17	69532305	69532395	protein_coding	Epb4.1l3	intron	ENSMUSG00000024044	NonProperStrand	2	1	-inf
chr14	32191953	32192020	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr18	35557030	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-6.3871
chr1	141572959	141573049	LTR	ETnERV2-int	ERVK	chr1ETnERV2-int141572940	ProperStrand	1	chr1	141573287	141573367	LTR	RMER16-int	ERVK	chr1RMER16-int141573067	ProperStrand	1	1	-inf
chr2	90395136	90395168	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr8	83937702	83937718	protein_coding	Inpp4b	intron	ENSMUSG00000037940	ProperStrand	28	1	-3.2130
chr12	37002345	37002363	LTR	ORR1C2	MaLR	chr12ORR1C237002097	ProperStrand	2	chr6	47796797	47796844	protein_coding	Zfp398	intron	ENSMUSG00000062519	NonProperStrand	4	1	-19.9190
chr12	99645574	99645656	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr2	130276270	130276345	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	1	-4.6574
chr5	146261275	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr10	127267480	127274721	pseudogene	Rdh18-ps	.	ENSMUSG00000054031	ProperStrand	2	1	-13.1148
chr9	110386864	110386883	protein_coding	Kif9	intron	ENSMUSG00000032489	NonProperStrand	1	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-inf
chr1	182108649	182108729	protein_coding	Adck3	intron	ENSMUSG00000026489	ProperStrand	1	chr5	117570164	117570254	protein_coding	Taok3	utr5	ENSMUSG00000061288	ProperStrand	1	1	-inf
chr2	152467430	152467520	LINE	Lx7	L1	chr2Lx7152467354	NonProperStrand	1	chr2	152467243	152467323	SINE	B3	B2	chr2B3152467122	ProperStrand	1	1	-inf
chr4	132309940	132310013	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr9	75376822	75376841	protein_coding	Tmod3	intron	ENSMUSG00000058587	ProperStrand	1	1	-inf
chr11	6528106	6528152	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr18	34939356	34939380	protein_coding	Kdm3b	intron	ENSMUSG00000038773	NonProperStrand	3	1	-12.0535
chr2	73012890	73012912	protein_coding	Ola1	intron	ENSMUSG00000027108	ProperStrand	17	chr4	132309478	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-4.9077
chr2	90395138	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	158356420	158359894	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	4	-3.9928
chr16	23110767	23110795	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr8	4237059	4237075	protein_coding	Lrrc8e	utr3	ENSMUSG00000046589	NonProperStrand	1	1	-inf
chr8	95198139	95198229	Low_complexity	CT-rich	Low_complexity	chr8CT-rich95198111	NonProperStrand	2	chr8	95198378	95198458	protein_coding	Irx6	utr5	ENSMUSG00000031738	NonProperStrand	2	2	-inf
chr11	109012081	109012102	LTR	RMER17B	ERVK	chr11RMER17B109012078	NonProperStrand	4	chr5	146261174	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-8.1425
chr3	31458683	31458699	LINE	L1Md_F2	L1	chr3L1Md_F231458416	NonProperStrand	4	chr9	56223572	56223676	protein_coding	C230081A13Rik	intron	ENSMUSG00000074305	ProperStrand	8	1	-16.7243
chr7	46549878	46549896	LINE	L1Md_T	L1	chr7L1Md_T46546421	ProperStrand	1	chr17	39847249	39847274	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	1	-inf
chr3	106116172	106116262	LINE	L1_Mur2	L1	chr3L1_Mur2106115565	ProperStrand	1	chr3	106116645	106116725	LINE	Lx5	L1	chr3Lx5106116510	ProperStrand	1	1	-inf
chr6	138395295	138395313	protein_coding	Lmo3	intron	ENSMUSG00000030226	NonProperStrand	3	chr8	95746115	95746182	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-13.3766
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr14	20683458	20683896	LTR	ORR1B1-int	MaLR	chr14ORR1B1-int20683015	NonProperStrand	1	1	-inf
chr1	161037359	161037405	LTR	RLTR11A2	ERVK	chr1RLTR11A2161037059	NonProperStrand	4	chr15	34440846	34440869	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-10.1038
chr17	39847702	39847727	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	99234271	99234289	protein_coding	Krt28	intron	ENSMUSG00000055937	ProperStrand	2	1	-6.4812
chr17	24719729	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr10	53349060	53349077	protein_coding	Mcm9	intron	ENSMUSG00000058298	NonProperStrand	3	1	-11.2158
chr17	39847756	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	91270379	91270396	protein_coding	Olig1	exon	ENSMUSG00000046160	NonProperStrand	2	1	-6.4812
chr13	78683670	78683760	LINE	L1VL2	L1	chr13L1VL278683637	ProperStrand	1	chr13	78684026	78684106	LINE	Lx5	L1	chr13Lx578683907	ProperStrand	1	1	-inf
chr11	109650973	109651043	protein_coding	1700012B07Rik	intron	ENSMUSG00000020617	NonProperStrand	1	chr7	109521304	109521394	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-inf
chr4	132309495	132309579	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr5	136996384	136996441	protein_coding	Cux1	intron	ENSMUSG00000029705	NonProperStrand	5	1	-7.4568
chr7	54604223	54604313	protein_coding	Mrgpra1	intron	ENSMUSG00000050650	ProperStrand	1	chr14	33968108	33968188	protein_coding	Wdfy4	intron	ENSMUSG00000051506	NonProperStrand	26	1	-inf
chr2	32963381	32963420	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	chr14	27001559	27001822	protein_coding	Gm10393	intron	ENSMUSG00000072674	ProperStrand	2	1	-11.2136
chr17	39847775	39847865	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	41830443	41830459	Other	RMER1B	Other	chr19RMER1B41830336	ProperStrand	2	1	-6.4812
chr1	61547281	61547371	LTR	RMER19C	ERVK	chr1RMER19C61547307	NonProperStrand	1	chr1	85278047	85278127	pseudogene	Gm16026	.	ENSMUSG00000079455	NonProperStrand	1	1	-inf
chr2	152326340	152326357	LTR	ORR1D2	MaLR	chr2ORR1D2152326077	ProperStrand	1	chr13	52071255	52071273	lincRNA	Gm16767	exon	ENSMUSG00000086318	ProperStrand	1	1	-inf
chr4	132352464	132352504	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr16	56697483	56697519	protein_coding	Tfg	intron	ENSMUSG00000022757	ProperStrand	4	1	-9.7326
chr10	78689642	78689732	LINE	Lx7	L1	chr10Lx778689186	ProperStrand	1	chr10	78689780	78689860	LINE	Lx7	L1	chr10Lx778689664	ProperStrand	1	1	-inf
chr15	85177751	85177778	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-4.3944
chr14	102050810	102050900	Low_complexity	CT-rich	Low_complexity	chr14CT-rich102050820	ProperStrand	1	chr14	102050380	102050460	SINE	PB1D7	Alu	chr14PB1D7102050393	NonProperStrand	1	1	-inf
chr17	39847356	39847412	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	56733220	56733288	protein_coding	Phax	intron	ENSMUSG00000008301	ProperStrand	6	1	-3.8783
chr10	23785349	23785450	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr12	86701590	86701607	protein_coding	Tmed10	intron	ENSMUSG00000021248	ProperStrand	2	1	-10.3808
chr17	39847207	39847329	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chrX	95952110	95952144	protein_coding	Ophn1	intron	ENSMUSG00000031214	NonProperStrand	4	1	-12.4502
chr7	143119519	143119609	LTR	MTE2a	MaLR	chr7MTE2a143119343	NonProperStrand	1	chr7	143119959	143120039	SINE	B1_Mus1	Alu	chr7B1_Mus1143119916	ProperStrand	1	1	-inf
chr5	146261266	146261320	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr9	118674952	118675015	protein_coding	Itga9	intron	ENSMUSG00000039115	NonProperStrand	10	1	-9.3157
chr18	74412995	74413075	LTR	MTE-int	MaLR	chr18MTE-int74412944	ProperStrand	1	chr18	74412824	74412914	LTR	ORR1E	MaLR	chr18ORR1E74412704	ProperStrand	1	1	-inf
chr1	165763862	165763878	protein_coding	Kifap3	intron	ENSMUSG00000026585	ProperStrand	3	chr2	5379279	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-8.3841
chr17	39847452	39848054	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr17	24720771	24720907	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	19	-3.6553
chr11	69073539	69073562	SINE	PB1D9	Alu	chr11PB1D969073505	ProperStrand	1	chr13	112578217	112578303	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-inf
chr15	76178630	76178763	protein_coding-noncoding	Sharpin	utr3	ENSMUSG00000022552	ProperStrand	8	chr15	76178734	76178910	protein_coding	Sharpin	intron	ENSMUSG00000022552	ProperStrand	7	3	-23.4103
chr17	39847398	39848067	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	23110381	23111690	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	55	-8.0863
chr10	23785349	23785442	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr17	24719675	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	3	-4.2243
chr14	19278165	19278193	LTR	ORR1A2	MaLR	chr14ORR1A219277951	NonProperStrand	4	chr16	23110846	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr3	88716880	88716898	protein_coding-noncoding	Msto1	utr3	ENSMUSG00000068922	ProperStrand	1	chr18	35557044	35557100	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-inf
chr6	131380326	131380375	Other	RMER1B	Other	chr6RMER1B131380162	ProperStrand	26	chr5	114851974	114852031	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	1	-5.1058
chr9	105819503	105819552	protein_coding	Col6a5	intron	ENSMUSG00000091345	ProperStrand	2	chr16	23110833	23110865	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-8.6674
chr4	55350157	55350248	SINE	PB1D10	Alu	chr4PB1D1055350158	NonProperStrand	1	chr16	23110832	23110863	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr9	45321513	45321975	protein_coding	Dscaml1	intron	ENSMUSG00000032087	NonProperStrand	5	chr7	111076994	111077025	protein_coding	Olfr631	intron	ENSMUSG00000042219	NonProperStrand	4	1	-17.7390
chr10	39959641	39959658	protein_coding	Rpf2	intron	ENSMUSG00000038510	NonProperStrand	15	chr9	15313803	15313825	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-6.1755
chr2	84332857	84332874	LINE	Lx6	L1	chr2Lx684332712	ProperStrand	1	chr4	132309513	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr17	39847439	39847529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	138309638	138310214	protein_coding	Pla2g2f	intron	ENSMUSG00000028749	NonProperStrand	1	1	-inf
chr8	107239692	107239782	LTR	MMTV-int	ERVK	chr8MMTV-int107238852	NonProperStrand	1	chr8	124098035	124098115	protein_coding	Fbxo31	intron	ENSMUSG00000031811	ProperStrand	2	1	-inf
chr17	35162584	35162664	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr7	112790880	112790970	protein_coding	Fxc1	utr3	ENSMUSG00000089847	ProperStrand	2	1	-13.4039
chr17	39846768	39846883	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chrX	106200172	106200209	protein_coding	Hmgn5	utr3	ENSMUSG00000031245	NonProperStrand	1	1	-inf
chr4	132352441	132352833	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr17	24720804	24720906	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	7	-11.6379
chr17	39846759	39846788	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr14	96588858	96588958	protein_coding	Klhl1	intron	ENSMUSG00000022076	NonProperStrand	8	1	-3.8005
chr11	55482748	55482772	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr5	4756852	4756952	protein_coding	Fzd1	exon	ENSMUSG00000044674	ProperStrand	4	1	-11.6769
chr16	35981604	35981644	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr9	110281347	110281365	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	1	-5.4083
chr15	89354779	89354813	protein_coding-noncoding	Shank3	utr5	ENSMUSG00000022623	NonProperStrand	1	chr15	34440825	34440885	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-inf
chr2	23815511	23815528	LINE	L1_Rod	L1	chr2L1_Rod23814855	NonProperStrand	1	chr9	101074220	101074310	protein_coding	Ppp2r3a	intron	ENSMUSG00000043154	ProperStrand	3	1	-inf
chr3	123507995	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr19	41830443	41830459	Other	RMER1B	Other	chr19RMER1B41830336	ProperStrand	2	1	-9.9469
chr13	28469281	28469371	LINE	Lx2A1	L1	chr13Lx2A128465716	ProperStrand	1	chr9	19657750	19657830	LTR	MurERV4_19-int	ERVK	chr9MurERV4_19-int19656008	ProperStrand	26	1	-inf
chr1	65005478	65005568	LINE	L1MC1	L1	chr1L1MC165005458	ProperStrand	1	chr1	65005719	65005799	SINE	B1_Mm	Alu	chr1B1_Mm65005721	ProperStrand	1	1	-inf
chr5	80029250	80029272	LINE	L1_Mm	L1	chr5L1_Mm80028899	NonProperStrand	1	chr17	39847823	39847880	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	1	-inf
chr17	47791518	47791536	protein_coding	Gm20517	intron	ENSMUSG00000023984	ProperStrand	2	chr9	123461876	123461914	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr5	125048492	125049389	protein_coding-noncoding	Tctn2	utr5	ENSMUSG00000029386	NonProperStrand	1	chr5	125050933	125051013	protein_coding	Tctn2	intron	ENSMUSG00000029386	NonProperStrand	2	1	-inf
chr2	165807849	165812368	lincRNA	Gm11464	intron	ENSMUSG00000087351	ProperStrand	1	chr4	132309497	132309543	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr6	140607495	140607513	protein_coding	Aebp2	intron	ENSMUSG00000030232	ProperStrand	2	chr19	8888606	8888628	protein_coding	Ttc9c	intron	ENSMUSG00000071660	NonProperStrand	3	1	-20.8207
chr17	82332158	82332176	LTR	ORR1D1	MaLR	chr17ORR1D182332137	ProperStrand	1	chr2	158356420	158356457	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-inf
chr12	20990492	20990582	SINE	B1_Mur1	Alu	chr12B1_Mur120990424	NonProperStrand	1	chr12	19388096	19388176	SINE	B3	B2	chr12B319388035	NonProperStrand	5	1	-inf
chr11	109012012	109012046	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr17	24719689	24719779	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-3.6187
chr3	43345904	43345984	LINE	Lx6	L1	chr3Lx643345844	ProperStrand	1	chr3	43345504	43345594	LTR	RLTR10	ERVK	chr3RLTR1043345478	ProperStrand	1	1	-inf
chr9	20911436	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	11	chr4	132309475	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	2	-9.5585
chr17	39847223	39847271	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr13	90099028	90099075	protein_coding	Xrcc4	intron	ENSMUSG00000021615	NonProperStrand	12	1	-4.5594
chrX	37082964	37083011	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr13	49684298	49684321	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-6.6933
chr17	39847181	39847213	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr9	59678123	59678223	protein_coding	Myo9a	intron	ENSMUSG00000039585	ProperStrand	13	1	-4.4011
chr15	76178050	76178150	protein_coding-noncoding	Sharpin	utr3	ENSMUSG00000022552	ProperStrand	8	chr7	30628274	30628294	protein_coding-noncoding	Zfp940	utr3	ENSMUSG00000050855	NonProperStrand	1	1	-inf
chr15	35142840	35142920	LINE	L1MB7	L1	chr15L1MB735142840	ProperStrand	1	chr15	35142981	35143071	LINE	L1MB7	L1	chr15L1MB735142992	ProperStrand	1	1	-inf
chr10	15937040	15937130	LINE	Lx	L1	chr10Lx15936826	NonProperStrand	1	chr14	79860957	79861037	protein_coding	Wbp4	utr3	ENSMUSG00000022023	NonProperStrand	5	1	-inf
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	NonProperStrand	13	chr13	95330598	95330673	protein_coding	Ap3b1	intron	ENSMUSG00000021686	NonProperStrand	4	1	-15.6996
chr16	63146546	63146636	LINE	L1Md_T	L1	chr16L1Md_T63145860	NonProperStrand	1	chr17	4082757	4082837	LINE	L1Md_A	L1	chr17L1Md_A4082095	NonProperStrand	21	1	-inf
chr17	39847026	39847138	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	87429187	87429207	protein_coding	Arhgef11	intron	ENSMUSG00000041977	NonProperStrand	3	1	-5.9338
chr11	109011747	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	107608969	107608986	protein_coding	Sema3f	intron	ENSMUSG00000034684	NonProperStrand	1	1	-inf
chr11	55482693	55482843	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr13	97190548	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	4	-7.4768
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	4136307	4136351	LTR	MuRRS4-int	ERV1	chrXMuRRS4-int4135877	NonProperStrand	21	2	-4.1843
chr11	100955150	100955240	protein_coding-noncoding	Psmc3ip	utr3	ENSMUSG00000019303	NonProperStrand	1	chr11	100954951	100955031	protein_coding	Psmc3ip	intron	ENSMUSG00000019303	NonProperStrand	1	1	-inf
chr2	131936753	131936804	protein_coding	Slc23a2	intron	ENSMUSG00000027340	NonProperStrand	6	chr15	80012570	80012591	protein_coding	Mgat3	intron	ENSMUSG00000042428	NonProperStrand	3	1	-18.0454
chr16	23110396	23110445	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr12	84418045	84418062	protein_coding	Dpf3	intron	ENSMUSG00000021221	NonProperStrand	3	1	-7.8954
chr2	90395145	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr5	8712739	8712765	protein_coding	Abcb1a	intron	ENSMUSG00000040584	ProperStrand	2	1	-8.9527
chr17	39846664	39846753	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr6	39404813	39405749	LTR	RLTR12B	ERVK	chr6RLTR12B39404664	NonProperStrand	1	1	-inf
chr6	133349875	133349955	LINE	L1_Mur3	L1	chr6L1_Mur3133349311	ProperStrand	1	chr6	133350069	133350159	SINE	B1_Mus1	Alu	chr6B1_Mus1133350063	NonProperStrand	1	1	-inf
chr18	73590179	73590259	LINE	Lx9	L1	chr18Lx973589302	NonProperStrand	1	chr18	73590369	73590459	Other	RMER1A	Other	chr18RMER1A73590330	NonProperStrand	1	1	-inf
chr11	109011748	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr16	23110755	23111644	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	9	-5.3462
chr13	117227387	117227467	LINE	Lx2B	L1	chr13Lx2B117227275	NonProperStrand	1	chr13	117227214	117227304	LINE	Lx4B	L1	chr13Lx4B117227211	NonProperStrand	1	1	-inf
chr9	110281290	110281316	protein_coding	Scap	intron	ENSMUSG00000032485	ProperStrand	80	chr6	125121723	125121760	protein_coding	Ncapd2	exon	ENSMUSG00000038252	NonProperStrand	10	1	-9.9901
chr6	115808032	115808115	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr12	112974699	112974716	protein_coding	2810002N01Rik	intron	ENSMUSG00000037787	ProperStrand	15	1	-8.7604
chr13	97190552	97190622	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr1	34433138	34433156	protein_coding	Gm11158	intron	ENSMUSG00000079617	NonProperStrand	5	1	-7.6184
chr14	75847946	75848009	LINE	L1MC5	L1	chr14L1MC575847771	NonProperStrand	116	chr12	99645567	99645667	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	1	-6.2328
chr13	60374296	60374312	LTR	RMER15	ERVL	chr13RMER1560374250	ProperStrand	1	chr16	57391521	57391592	protein_coding	Filip1l	intron	ENSMUSG00000043336	ProperStrand	29	1	-inf
chr16	37739332	37739412	LTR	MERVL_2A-int	ERVL	chr16MERVL_2A-int37738507	ProperStrand	1	chr16	37739880	37739970	SINE	B2_Mm2	B2	chr16B2_Mm237739847	ProperStrand	1	1	-inf
chr13	97190552	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr2	160907608	160907624	protein_coding	Chd6	intron	ENSMUSG00000057133	ProperStrand	8	1	-6.6028
chr15	83111713	83111793	SINE	B3A	B2	chr15B3A83111716	NonProperStrand	1	chr2	131918309	131918399	protein_coding	Slc23a2	intron	ENSMUSG00000027340	ProperStrand	10	1	-inf
chrX	7867559	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	16	chr5	121205007	121205090	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-6.2659
chr11	12464873	12464890	LTR	IAPEz-int	ERVK	chr11IAPEz-int12462249	ProperStrand	1	chr17	24719730	24719808	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	1	-inf
chr5	137523363	137523453	SINE	B1F	Alu	chr5B1F137523367	NonProperStrand	1	chr5	137523550	137523630	SINE	B1_Mus1	Alu	chr5B1_Mus1137523479	NonProperStrand	1	1	-inf
chr10	85268235	85268325	LINE	L1Md_F3	L1	chr10L1Md_F385267916	NonProperStrand	1	chr10	85268427	85268507	LTR	RMER4A	ERVK	chr10RMER4A85268398	NonProperStrand	1	1	-inf
chr13	93968951	93969041	LTR	IAPEy-int	ERVK	chr13IAPEy-int93968951	NonProperStrand	1	chr13	93969442	93969522	LTR	IAPEy-int	ERVK	chr13IAPEy-int93969113	NonProperStrand	1	1	-inf
chr1	16533598	16533678	LTR	RLTR11A2	ERVK	chr1RLTR11A216533554	NonProperStrand	1	chr1	16534100	16534190	SINE	B3	B2	chr1B316533970	ProperStrand	1	1	-inf
chr11	70729255	70729301	protein_coding	Rabep1	intron	ENSMUSG00000020817	ProperStrand	4	chr16	23110912	23110933	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr11	106501253	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr5	5749261	5749277	protein_coding	Steap1	utr5	ENSMUSG00000015652	ProperStrand	1	1	-inf
chr11	35689003	35689023	protein_coding	Wwc1	intron	ENSMUSG00000018849	NonProperStrand	3	chr2	5379317	5379342	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-8.3841
chr12	54696812	54696902	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	14	chr4	132309477	132309544	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-5.2943
chr2	132304057	132304146	LINE	L1MA5	L1	chr2L1MA5132303587	ProperStrand	1	chr2	132304442	132304522	LTR	MTC	MaLR	chr2MTC132304322	ProperStrand	1	1	-inf
chr3	96176404	96176436	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr16	23110398	23110430	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-3.3104
chr5	146261132	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr14	47380299	47380348	protein_coding	Cdkn3	utr5	ENSMUSG00000037628	ProperStrand	1	1	-inf
chr11	102197075	102197165	LINE	L1MD	L1	chr11L1MD102196963	ProperStrand	3	chr11	102197252	102197332	Simple_repeat	(TG)n	Simple_repeat	chr11(TG)n102197263	NonProperStrand	3	3	-inf
chr6	113368704	113368794	protein_coding-noncoding	Rpusd3	utr3	ENSMUSG00000051169	ProperStrand	1	chr6	113368809	113368889	protein_coding	Rpusd3	exon	ENSMUSG00000051169	ProperStrand	1	1	-inf
chr10	85188601	85188681	LTR	MTD	MaLR	chr10MTD85188578	ProperStrand	1	chr10	85188101	85188191	LTR	RMER6A	ERVK	chr10RMER6A85188047	ProperStrand	1	1	-inf
chr4	132352774	132352832	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr5	115157915	115157945	protein_coding	Tchp	utr5	ENSMUSG00000002486	NonProperStrand	2	1	-11.5201
chr10	23785346	23785397	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr1	118985481	118985513	LINE	Lx4A	L1	chr1Lx4A118985436	NonProperStrand	1	1	-inf
chr17	39847279	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	163779870	163779888	protein_coding	AI848100	intron	ENSMUSG00000040297	NonProperStrand	9	1	-5.1394
chr1	146308161	146308251	LINE	L1Md_A	L1	chr1L1Md_A146305367	ProperStrand	1	chr8	3390111	3390191	protein_coding	A430078G23Rik	utr3	ENSMUSG00000074497	ProperStrand	2	1	-inf
chr1	143517790	143517880	LTR	MurERV4-int	ERVK	chr1MurERV4-int143517787	ProperStrand	1	chr1	143518194	143518274	LTR	MurERV4-int	ERVK	chr1MurERV4-int143518065	NonProperStrand	1	1	-inf
chr1	147545961	147546051	LINE	L1Md_F2	L1	chr1L1Md_F2147545041	NonProperStrand	1	chr1	147546396	147546476	LINE	L1Md_F2	L1	chr1L1Md_F2147546292	NonProperStrand	1	1	-inf
chr11	109011791	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	71868125	71868143	protein_coding	Tcf12	intron	ENSMUSG00000032228	ProperStrand	4	1	-5.5999
chr13	44869606	44870025	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr7	15949474	15949491	protein_coding	Obox2	intron	ENSMUSG00000074369	ProperStrand	23	2	-7.5846
chr12	45818285	45818375	LTR	MMETn-int	ERVK	chr12MMETn-int45813708	ProperStrand	1	chr18	71904234	71904314	protein_coding	Dcc	intron	ENSMUSG00000060534	NonProperStrand	4	1	-inf
chr17	39847160	39847219	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr17	12919590	12919624	protein_coding	Igf2r	exon	ENSMUSG00000023830	NonProperStrand	56	2	-3.2789
chr7	24192391	24192472	protein_coding	Nlrp5	intron	ENSMUSG00000015721	NonProperStrand	2	chr4	40934880	40934970	protein_coding	Nfx1	intron	ENSMUSG00000028423	NonProperStrand	2	1	-21.5566
chr7	29446464	29446564	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr15	34440822	34440871	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	1	-6.4843
chr16	20661693	20661722	protein_coding	Psmd2	exon	ENSMUSG00000006998	ProperStrand	3	chr2	90395139	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.8617
chr4	132309497	132309543	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr9	64295941	64296041	protein_coding	Megf11	intron	ENSMUSG00000036466	ProperStrand	10	1	-5.9782
chr15	84684076	84684156	protein_coding	Phf21b	intron	ENSMUSG00000016624	NonProperStrand	3	chr15	55666419	55666509	protein_coding	Sntb1	intron	ENSMUSG00000060429	ProperStrand	3	1	-19.6922
chr5	110492832	110492922	LINE	L1Md_Gf	L1	chr5L1Md_Gf110492790	NonProperStrand	1	chr5	110492691	110492771	LTR	RLTR44B	ERVK	chr5RLTR44B110492683	NonProperStrand	1	1	-inf
chr5	114852012	114852043	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr18	43393230	43393248	protein_coding	Stk32a	intron	ENSMUSG00000039954	NonProperStrand	1	1	-inf
chrX	77417886	77417903	Simple_repeat	(TTTTG)n	Simple_repeat	chrX(TTTTG)n77417866	ProperStrand	1	chr19	34669623	34669639	protein_coding	Gm14446	intron	ENSMUSG00000079339	ProperStrand	1	1	-inf
chr3	107931375	107931619	protein_coding	Gnai3	intron	ENSMUSG00000000001	NonProperStrand	1	chr11	106439140	106439263	protein_coding	Tex2	intron	ENSMUSG00000040548	NonProperStrand	4	1	-inf
chr7	37831997	37832087	LTR	MLT1H	MaLR	chr7MLT1H37831924	NonProperStrand	1	chr7	37832262	37832342	SINE	B3	B2	chr7B337832215	ProperStrand	1	1	-inf
chr10	70398446	70398536	protein_coding-noncoding	Bicc1	utr3	ENSMUSG00000014329	ProperStrand	1	chr10	70398617	70398697	protein_coding	Bicc1	exon	ENSMUSG00000014329	ProperStrand	3	1	-inf
chr17	39846758	39846842	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	mmu-miR-151-5p	0	21	miRNA	mmu-miR-151-5p	.	mmu-miR-151-5p	ProperStrand	1	1	-inf
chr4	116702966	116703046	protein_coding	Eif2b3	intron	ENSMUSG00000028683	ProperStrand	1	chr10	127480145	127480235	protein_coding	Naca	exon	ENSMUSG00000061315	ProperStrand	1	1	-inf
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr14	55293419	55293441	protein_coding	Acin1	intron	ENSMUSG00000022185	NonProperStrand	1	1	-inf
chr17	39847057	39847312	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	6	-4.4974
chr4	149120027	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	chr11	116843218	116843235	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-4.6424
chr8	105930327	105930361	LTR	MLT1F	MaLR	chr8MLT1F105930114	NonProperStrand	1	chr16	23110837	23110886	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr5	146261285	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr8	116281860	116281879	protein_coding	Adamts18	intron	ENSMUSG00000053399	ProperStrand	2	1	-13.1148
chr12	87437702	87437787	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr3	65528233	65528250	protein_coding	Lekr1	intron	ENSMUSG00000074579	NonProperStrand	3	1	-12.8779
chr17	39846352	39846418	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr2	135473824	135473842	LTR	MLT1D	MaLR	chr2MLT1D135473680	NonProperStrand	1	1	-inf
chr4	140584691	140584781	protein_coding-noncoding	Crocc	utr3	ENSMUSG00000040860	NonProperStrand	1	chr4	140584299	140584379	protein_coding	Crocc	exon	ENSMUSG00000040860	NonProperStrand	2	1	-inf
chr11	87617860	87617877	protein_coding	Mpo	utr3	ENSMUSG00000009350	NonProperStrand	2	chr5	121205006	121205117	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	1	-11.0157
chr11	109011748	109011779	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chrX	72992111	72992132	lincRNA	4933407K13Rik	exon	ENSMUSG00000087396	NonProperStrand	7	1	-4.3977
chr17	35159802	35162655	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr8	70895760	70895888	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	3	-7.6131
chr3	94395217	94395297	LTR	RMER19C	ERVK	chr3RMER19C94394991	NonProperStrand	1	chr3	94394712	94394802	SINE	B1_Mus1	Alu	chr3B1_Mus194394646	NonProperStrand	1	1	-inf
chr17	31242048	31242065	protein_coding	Abcg1	intron	ENSMUSG00000024030	NonProperStrand	1	chr9	123461954	123462007	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr17	39847193	39847241	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr4	155222803	155222829	protein_coding	Dvl1	intron	ENSMUSG00000029071	NonProperStrand	1	1	-inf
chr10	23785399	23785428	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr4	139482648	139485340	lincRNA	Gm13028	intron	ENSMUSG00000087628	ProperStrand	1	1	-inf
chr6	39773391	39773481	LTR	ORR1E	MaLR	chr6ORR1E39773244	NonProperStrand	1	chr6	39599426	39599506	protein_coding	Braf	intron	ENSMUSG00000002413	NonProperStrand	3	1	-inf
chr5	5813686	5813776	LINE	L1_Mus2	L1	chr5L1_Mus25813142	ProperStrand	1	chr7	70273679	70273759	protein_coding	Chrna7	intron	ENSMUSG00000030525	ProperStrand	2	1	-inf
chr1	186088250	186088311	LTR	RMER19B	ERVK	chr1RMER19B186087826	ProperStrand	1	chr9	123462079	123462148	protein_coding	Sacm1l	intron	ENSMUSG00000025240	NonProperStrand	27	1	-inf
chr17	39846759	39846787	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	4339046	4339117	rRNA	n-R5s194	.	ENSMUSG00000077912	ProperStrand	2	1	-7.0123
chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-5.2768
chr13	23581936	23581967	SINE	B3A	B2	chr13B3A23581888	NonProperStrand	1	chr8	126944898	126944951	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-inf
chr11	109012081	109012100	LTR	RMER17B	ERVK	chr11RMER17B109012078	NonProperStrand	4	chr16	23110835	23110862	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr11	109011746	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr10	91118347	91118533	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	3	-4.3766
chr10	116966315	116966405	LINE	Lx8	L1	chr10Lx8116966299	NonProperStrand	1	chr10	116966185	116966265	Simple_repeat	(CA)n	Simple_repeat	chr10(CA)n116966172	ProperStrand	1	1	-inf
chr10	23785349	23785399	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chrX	94189819	94189838	LINE	L1VL2	L1	chrXL1VL294189392	NonProperStrand	10	1	-6.6038
chr17	39847990	39848053	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	110281288	110281333	protein_coding	Scap	intron	ENSMUSG00000032485	NonProperStrand	6	1	-3.8783
chr18	74778686	74778714	protein_coding	Myo5b	intron	ENSMUSG00000025885	NonProperStrand	13	chr9	34867427	34867445	protein_coding	St3gal4	intron	ENSMUSG00000032038	NonProperStrand	1	1	-inf
chr1	9940626	9940706	LTR	MTEa	MaLR	chr1MTEa9940630	ProperStrand	2	chr6	115138452	115138543	protein_coding	Syn2	intron	ENSMUSG00000009394	NonProperStrand	3	2	-inf
chr11	109011824	109011846	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr12	58761969	58761985	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	1	-3.1856
chr14	71173126	71173206	protein_coding-noncoding	Dok2	utr5	ENSMUSG00000022102	ProperStrand	1	chr14	71173405	71173495	protein_coding	Dok2	intron	ENSMUSG00000022102	ProperStrand	1	1	-inf
chr4	123293162	123293227	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	chr4	125711870	125711886	protein_coding	Csf3r	intron	ENSMUSG00000028859	ProperStrand	27	1	-8.4895
chr14	30626282	30626299	LTR	MLT1K	MaLR	chr14MLT1K30626213	ProperStrand	1	chr11	32582453	32582487	protein_coding	Fbxw11	intron	ENSMUSG00000020271	ProperStrand	10	1	-inf
chr6	115807974	115808011	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	chr4	145745110	145745127	protein_coding	Gm13251	intron	ENSMUSG00000070605	NonProperStrand	32	1	-7.2215
chr16	17222211	17222242	SINE	B2_Mm1a	B2	chr16B2_Mm1a17222082	NonProperStrand	6	chr9	123462115	123462155	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-5.5993
chr17	39846462	39846496	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr4	21870397	21871446	protein_coding	6230409E13Rik	intron	ENSMUSG00000028246	NonProperStrand	4	1	-5.2608
chr15	103432187	103432277	Other	RMER1B	Other	chr15RMER1B103431842	NonProperStrand	1	chr15	103432574	103432654	SINE	B3	B2	chr15B3103432495	ProperStrand	1	1	-inf
chr11	78327996	78328086	protein_coding	Poldip2	intron	ENSMUSG00000001100	ProperStrand	3	chr1	74159893	74159973	protein_coding	Tns1	intron	ENSMUSG00000055322	NonProperStrand	8	2	-inf
chr17	39847131	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr5	146261275	146261338	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	5	-5.5811
chr7	124589466	124589482	protein_coding	Xylt1	intron	ENSMUSG00000030657	NonProperStrand	3	chr1	131573998	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-13.1429
chr17	39847474	39847506	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr11	86471194	86471215	protein_coding	Vmp1	intron	ENSMUSG00000018171	ProperStrand	1	1	-inf
chr5	133622084	133622174	LTR	MTC	MaLR	chr5MTC133622054	ProperStrand	1	chr18	9877507	9877587	protein_coding	Colec12	utr3	ENSMUSG00000036103	ProperStrand	3	1	-inf
chr17	39847454	39847531	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	108225888	108225909	protein_coding	Itpr1	intron	ENSMUSG00000030102	NonProperStrand	5	1	-4.2576
chr16	84318683	84318773	DNA	Tigger7	MER2_type	chr16Tigger784318661	NonProperStrand	1	chr16	84318280	84318360	LTR	MTD	MaLR	chr16MTD84318273	NonProperStrand	1	1	-inf
chr2	90395147	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	130624177	130624193	protein_coding	Zkscan2	exon	ENSMUSG00000030757	NonProperStrand	1	1	-inf
chrX	7867560	7867576	LTR	RLTR11B	ERVK	chrXRLTR11B7867344	NonProperStrand	16	chr8	126944900	126944972	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	1	-7.7321
chr8	128792307	128792397	LTR	ORR1A0	MaLR	chr8ORR1A0128792203	ProperStrand	1	chr8	128792534	128792614	SINE	ID4_	ID	chr8ID4_128792549	NonProperStrand	1	1	-inf
chr12	67667936	67668026	protein_coding	Mdga2	intron	ENSMUSG00000034912	NonProperStrand	31	chr14	33968097	33968177	protein_coding	Wdfy4	intron	ENSMUSG00000051506	ProperStrand	18	1	-10.6813
chr7	110046449	110046476	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr18	35557030	35557104	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	1	-3.9403
chr4	55732044	55732134	DNA	MER44A	MER2_type	chr4MER44A55732008	NonProperStrand	1	chr4	55732274	55732354	DNA	MER44A	MER2_type	chr4MER44A55732287	NonProperStrand	1	1	-inf
chr10	23785348	23785397	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr6	88505063	88505161	protein_coding	Kbtbd12	intron	ENSMUSG00000033182	ProperStrand	3	1	-9.2859
chr17	39847552	39847612	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr12	73087993	73088010	protein_coding	Daam1	intron	ENSMUSG00000034574	ProperStrand	6	1	-3.8783
chr4	132352442	132352810	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr4	132309465	132310032	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	7	-7.2305
chr19	5802018	5802098	lincRNA	Malat1	exon	ENSMUSG00000092341	ProperStrand	18	chr11	108516736	108516826	protein_coding	Ccdc46	intron	ENSMUSG00000020728	ProperStrand	5	1	-14.5171
chr9	50596560	50596578	protein_coding	Alg9	intron	ENSMUSG00000032059	NonProperStrand	1	chr12	105031235	105031348	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-inf
chr15	89475902	89475949	LINE	Lx2	L1	chr15Lx289475356	ProperStrand	2	chr7	109521326	109521354	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	1	-10.7680
chr8	11654888	11654979	SINE	B2_Mm2	B2	chr8B2_Mm211654908	ProperStrand	2	chr8	11655011	11655091	protein_coding	1700016D06Rik	utr3	ENSMUSG00000031509	ProperStrand	2	2	-inf
chr5	146261020	146261127	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr4	123291341	123293282	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	3	-7.0078
chr6	134533806	134533896	DNA	RCHARR1	MER1_type	chr6RCHARR1134533739	ProperStrand	1	chr6	134533673	134533753	SINE	B1_Mm	Alu	chr6B1_Mm134533592	ProperStrand	1	1	-inf
chr15	76121327	76121407	miRNA	Mir3079	.	ENSMUSG00000093169	ProperStrand	1	chr15	76120850	76120940	protein_coding	Spatc1	intron	ENSMUSG00000049653	NonProperStrand	1	1	-inf
chr3	48020734	48020824	LINE	L1Md_F2	L1	chr3L1Md_F248020577	ProperStrand	1	chr3	48020485	48020565	LINE	L1_Mur2	L1	chr3L1_Mur248019596	ProperStrand	1	1	-inf
chr14	101487701	101487781	LTR	RLTR10-int	ERVK	chr14RLTR10-int101487368	ProperStrand	1	chr14	101487303	101487393	LTR	RLTR10	ERVK	chr14RLTR10101487004	ProperStrand	1	1	-inf
chr5	150953041	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	chr5	107905176	107907416	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	2	-7.2636
chr17	39846665	39846684	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	102328621	102328640	protein_coding	Cntnap5b	intron	ENSMUSG00000067028	ProperStrand	4	1	-5.2608
chr12	99645570	99645660	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr11	69669648	69669728	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-4.1226
chr17	39847447	39847976	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	146261278	146261337	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	8	-3.4410
chr2	90395134	90395188	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr17	24720794	24720905	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	8	-4.4939
chr16	19550331	19550421	LINE	L1_Mus1	L1	chr16L1_Mus119549861	ProperStrand	1	chr16	19550746	19550826	LTR	RLTR10A	ERVK	chr16RLTR10A19550749	NonProperStrand	1	1	-inf
chr1	54304972	54314155	protein_coding	Ccdc150	intron	ENSMUSG00000025983	ProperStrand	3	chr8	13876126	13876173	snoRNA	ENSMUSG00000065817_SNORA3	.	ENSMUSG00000065817	ProperStrand	80	1	-12.6936
chr17	93070404	93070422	LINE	L1_Mur2	L1	chr17L1_Mur293070377	ProperStrand	1	chr1	91366486	91366502	protein_coding	Agap1	intron	ENSMUSG00000055013	NonProperStrand	15	1	-inf
chr16	35981613	35981650	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr9	15313843	15315248	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	2	-4.6035
chr15	58138961	58139050	lincRNA	Gm15943	intron	ENSMUSG00000086801	NonProperStrand	1	chr1	74159889	74159969	protein_coding	Tns1	intron	ENSMUSG00000055322	NonProperStrand	8	1	-inf
chr18	33795200	33795289	LINE	L1Md_A	L1	chr18L1Md_A33794779	ProperStrand	25	chr13	112578228	112578294	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	1	-4.7058
chr3	104437924	104438014	SINE	B1F1	Alu	chr3B1F1104437848	NonProperStrand	1	chr3	104437673	104437753	SINE	B3	B2	chr3B3104437693	NonProperStrand	1	1	-inf
chr1	58317018	58317098	protein_coding-noncoding	Aox4	utr5	ENSMUSG00000038242	ProperStrand	1	chr1	58317414	58317504	protein_coding	Aox4	intron	ENSMUSG00000038242	ProperStrand	1	1	-inf
chr1	100180181	100180213	LINE	L1Md_A	L1	chr1L1Md_A100180179	NonProperStrand	6	chr5	146260994	146261018	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-7.2355
chr11	55482710	55482772	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr11	6528051	6528086	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	1	-4.8524
chr17	35162599	35162689	protein_coding	D17H6S56E-3	utr3	ENSMUSG00000007030	NonProperStrand	97	chr16	23110755	23110802	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	2	-7.0523
chr3	123507960	123508034	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr5	102963578	102966448	protein_coding	Arhgap24	intron	ENSMUSG00000057315	NonProperStrand	2	1	-9.9469
chr11	22584912	22585002	LTR	MTD	MaLR	chr11MTD22584937	NonProperStrand	2	chr11	22584764	22584844	LTR	MTE-int	MaLR	chr11MTE-int22584664	ProperStrand	2	2	-inf
chr5	100373664	100375246	LINE	L1MB5	L1	chr5L1MB5100373527	ProperStrand	1	chr17	39843872	39843936	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	1	-inf
chr5	124887428	124887508	SINE	B1_Mus2	Alu	chr5B1_Mus2124887435	NonProperStrand	1	chr5	124887181	124887271	SINE	B3	B2	chr5B3124887088	ProperStrand	1	1	-inf
chr13	75301783	75301863	LINE	L1VL1	L1	chr13L1VL175301673	NonProperStrand	1	chr13	75302004	75302094	LINE	L1_Mus3	L1	chr13L1_Mus375301963	NonProperStrand	1	1	-inf
chr6	3201510	3201527	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	ProperStrand	101	chr5	53998709	53998725	protein_coding	Rbpj	intron	ENSMUSG00000039191	ProperStrand	6	1	-10.6180
chr15	8279623	8279642	protein_coding	Nipbl	intron	ENSMUSG00000022141	NonProperStrand	3	chr2	90395139	90395187	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.8617
chr2	126740599	126740644	protein_coding	2010106G01Rik	intron	ENSMUSG00000027366	NonProperStrand	1	chr4	123291347	123291416	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-inf
chr5	146260994	146261017	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr3	153911641	153911690	protein_coding	Slc44a5	intron	ENSMUSG00000028360	NonProperStrand	16	1	-5.2025
chr9	120130421	120130448	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr2	144290631	144290649	pseudogene	Zfp133-ps	.	ENSMUSG00000083674	ProperStrand	2	1	-12.3739
chr9	17987813	17987839	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	13	chr8	123103042	123103082	protein_coding	Gse1	utr3	ENSMUSG00000031822	ProperStrand	13	1	-13.1374
chr11	109011826	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr15	58348804	58348924	protein_coding	Fer1l6	intron	ENSMUSG00000037106	ProperStrand	4	1	-5.5999
chr6	30370431	30370469	protein_coding	Klhdc10	intron	ENSMUSG00000029775	NonProperStrand	3	chr19	8888596	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-9.8520
chr10	23785349	23785475	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr7	100629863	100629884	LINE	Lx7	L1	chr7Lx7100629435	ProperStrand	7	1	-7.3548
chr5	146261278	146261301	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr2	34150838	34150855	antisense	C79798	.	ENSMUSG00000084908	ProperStrand	4	1	-11.3250
chr11	94938073	94938095	protein_coding	Itga3	utr5	ENSMUSG00000001507	NonProperStrand	6	chr19	8888593	8888635	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-8.2509
chr4	132352896	132352983	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	chrX	134758587	134758604	protein_coding	Il1rapl2	intron	ENSMUSG00000059203	NonProperStrand	14	1	-7.6370
chr12	54696806	54696853	protein_coding	Npas3	intron	ENSMUSG00000021010	ProperStrand	14	chr13	44869605	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-5.5164
chr17	39848036	39848055	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr7	28894232	28894313	protein_coding	Fcgbp	intron	ENSMUSG00000047730	NonProperStrand	3	1	-5.4090
chr17	39847844	39847941	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	139301864	139302446	protein_coding	Pax7	intron	ENSMUSG00000028736	ProperStrand	7	1	-3.5679
chr2	5379290	5379343	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr19	29015568	29015668	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	3	1	-8.3841
chr11	97781674	97781764	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr10	105238433	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-5.8467
chr17	39847767	39847802	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr13	35863317	35863333	protein_coding	Cdyl	intron	ENSMUSG00000059288	ProperStrand	2	1	-6.4812
chr12	50648675	50648765	LINE	L1Md_F	L1	chr12L1Md_F50648671	ProperStrand	1	chr12	50648583	50648663	LINE	L1Md_T	L1	chr12L1Md_T50648000	ProperStrand	1	1	-inf
chr10	9498066	9498156	protein_coding-noncoding	Stxbp5	utr3	ENSMUSG00000019790	NonProperStrand	1	chr10	9497517	9497597	protein_coding	Stxbp5	intron	ENSMUSG00000019790	NonProperStrand	3	1	-inf
chr19	37325099	37325179	LTR	RLTR23	ERV1	chr19RLTR2337324769	NonProperStrand	1	chr19	37325231	37328984	SINE	B1_Mur4	Alu	chr19B1_Mur437325256	NonProperStrand	1	1	-inf
chr1	21316600	21316690	LINE	L1_Mm	L1	chr1L1_Mm21316550	NonProperStrand	1	chr1	21316832	21316912	LTR	LTRIS_Mus	ERV1	chr1LTRIS_Mus21316696	ProperStrand	1	1	-inf
chr9	20911437	20911454	antisense	1700084C06Rik	.	ENSMUSG00000086016	ProperStrand	11	chr11	116843218	116843234	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-12.4016
chr15	61850004	61850084	Low_complexity	GA-rich	Low_complexity	chr15GA-rich61849928	NonProperStrand	1	chr15	61849676	61849766	SINE	MIR	MIR	chr15MIR61849626	NonProperStrand	1	1	-inf
chr10	122565919	122565999	protein_coding	Usp15	intron	ENSMUSG00000020124	ProperStrand	9	chr6	49005565	49005655	protein_coding	Gpnmb	intron	ENSMUSG00000029816	ProperStrand	1	1	-inf
chr10	5057859	5057875	protein_coding	Syne1	intron	ENSMUSG00000019769	ProperStrand	7	chr2	32963312	32963361	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-8.1812
chr16	82664139	82664229	LTR	RMER2	ERV1	chr16RMER282664051	ProperStrand	1	chr17	80926873	80926953	protein_coding	Cdkl4	intron	ENSMUSG00000033966	ProperStrand	1	1	-inf
chr15	98519717	98519734	LTR	ORR1C1	MaLR	chr15ORR1C198519301	ProperStrand	11	chr11	69669693	69669762	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-6.8719
chr15	34440834	34440864	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	chr4	123291341	123291432	protein_coding	Macf1	intron	ENSMUSG00000028649	NonProperStrand	61	1	-4.4816
chr4	43493026	43493059	SINE	B3	B2	chr4B343492960	NonProperStrand	40	chr4	43492926	43492952	Simple_repeat	(T)n	Simple_repeat	chr4(T)n43492906	NonProperStrand	2	1	-15.1900
chr5	79296139	79296219	LINE	L1MC1	L1	chr5L1MC179295936	ProperStrand	1	chr5	79295699	79295789	LINE	L1MD	L1	chr5L1MD79295601	ProperStrand	1	1	-inf
chr17	39846461	39846501	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	108554393	108554468	protein_coding	Aknad1	utr5	ENSMUSG00000049565	NonProperStrand	8	1	-3.8005
chr16	18274269	18274290	protein_coding	Dgcr8	intron	ENSMUSG00000022718	ProperStrand	3	chr7	112352559	112352575	protein_coding	Olfr686	exon	ENSMUSG00000048425	NonProperStrand	2	1	-20.7434
chr7	48030262	48030342	LTR	ORR1D1	MaLR	chr7ORR1D148030268	NonProperStrand	1	chr7	48030117	48030207	SINE	B3A	B2	chr7B3A48030054	NonProperStrand	1	1	-inf
chr9	109378056	109378136	LTR	RLTR45-int	ERVK	chr9RLTR45-int109376794	ProperStrand	1	chr9	109378367	109378457	LTR	RLTR45	ERVK	chr9RLTR45109378193	ProperStrand	1	1	-inf
chr1	113903960	113903978	LINE	L1_Mus3	L1	chr1L1_Mus3113902555	ProperStrand	7	chrX	123103876	123103894	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	8	1	-15.4729
chr3	96176389	96176436	LTR	RLTR1D	ERV1	chr3RLTR1D96176221	NonProperStrand	27	chr17	35685114	35685313	SINE	B4A	B4	chr17B4A35684899	NonProperStrand	2	1	-15.9877
chr2	168601393	168601411	SINE	B1_Mus1	Alu	chr2B1_Mus1168601317	ProperStrand	20	chr16	23110456	23110508	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-9.8994
chr5	146261160	146261205	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr13	49684379	49684433	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	1	-3.3081
chr13	97190548	97190616	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	chr5	150953040	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	2	-3.6704
chr1	60995595	60995685	DNA	MER5A1	MER1_type	chr1MER5A160995592	NonProperStrand	1	chr1	60995852	60995932	SINE	MIRc	MIR	chr1MIRc60995759	NonProperStrand	1	1	-inf
chr6	122729899	122729979	protein_coding	Slc2a3	intron	ENSMUSG00000003153	ProperStrand	2	chr9	123461893	123461983	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr5	4937210	4937300	protein_coding	Cdk14	intron	ENSMUSG00000028926	NonProperStrand	2	chr5	4058513	4058593	protein_coding	Akap9	intron	ENSMUSG00000040407	NonProperStrand	4	1	-19.9190
chr10	113096356	113096446	LINE	L1_Mus4	L1	chr10L1_Mus4113096012	NonProperStrand	1	chr12	67667927	67668007	protein_coding	Mdga2	intron	ENSMUSG00000034912	ProperStrand	36	1	-inf
chr11	70595945	70596035	LTR	LTRIS_Mus	ERV1	chr11LTRIS_Mus70595569	NonProperStrand	1	chr11	70596351	70596431	SINE	B1_Mus1	Alu	chr11B1_Mus170596299	ProperStrand	1	1	-inf
chr18	35557057	35557080	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr6	115807980	115808114	protein_coding	Ift122	intron	ENSMUSG00000030323	NonProperStrand	97	1	-3.7586
chr11	94942612	94942893	SINE	B2_Mm1a	B2	chr11B2_Mm1a94942684	ProperStrand	1	chr2	5379298	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chr12	87437718	87437817	protein_coding	1700019E19Rik	intron	ENSMUSG00000007867	NonProperStrand	73	chr2	130276317	130276360	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	1	-3.6986
chr18	56552378	56552458	LINE	L1MB7	L1	chr18L1MB756552259	ProperStrand	1	chr18	56552672	56552762	SINE	RSINE1	B4	chr18RSINE156552634	ProperStrand	1	1	-inf
chr4	15620754	15620834	LINE	Lx3A	L1	chr4Lx3A15620542	NonProperStrand	1	chr4	15620907	15620997	SINE	B3A	B2	chr4B3A15620865	NonProperStrand	1	1	-inf
chr17	39847453	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr9	120130419	120130554	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	16	-8.3962
chr4	47052923	47053013	protein_coding-noncoding	Anks6	utr3	ENSMUSG00000066191	ProperStrand	1	chr4	47053124	47053204	protein_coding	Anks6	intron	ENSMUSG00000066191	ProperStrand	2	1	-inf
chr17	39847440	39847552	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr8	84970301	84970338	LTR	MLT1A0	MaLR	chr8MLT1A084970294	NonProperStrand	1	1	-inf
chr12	113145918	113146008	Simple_repeat	(CCCG)n	Simple_repeat	chr12(CCCG)n113145898	ProperStrand	1	chr13	97190552	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr18	58705568	58705648	LINE	Lx8	L1	chr18Lx858704845	NonProperStrand	1	chr18	41723690	41723780	LTR	MLT1A	MaLR	chr18MLT1A41723644	ProperStrand	1	1	-inf
chr14	79861966	79862046	protein_coding	Wbp4	intron	ENSMUSG00000022023	ProperStrand	7	chr14	15818387	15818477	protein_coding	Nek10	intron	ENSMUSG00000042567	ProperStrand	4	1	-17.0104
chr1	119005900	119005990	SINE	RSINE1	B4	chr1RSINE1119005926	ProperStrand	1	chr1	161271976	161272056	protein_coding	Rfwd2	intron	ENSMUSG00000040782	ProperStrand	2	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr10	108363705	108363795	protein_coding	Syt1	intron	ENSMUSG00000035864	NonProperStrand	17	1	-10.1367
chr17	39846773	39847129	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	23111686	23111756	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	2	-3.1696
chr9	123461824	123462168	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr4	132309465	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	18	-5.3837
chr13	54190150	54190183	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	chr18	75820341	75820358	protein_coding	Ctif	intron	ENSMUSG00000052928	NonProperStrand	4	1	-12.7927
chr5	114852001	114852037	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr9	68771273	68771289	protein_coding	Rora	intron	ENSMUSG00000032238	NonProperStrand	5	1	-8.5249
chr8	104349541	104349559	LINE	L1Md_F2	L1	chr8L1Md_F2104349237	ProperStrand	1	chr4	120553008	120553957	protein_coding	Rims3	intron	ENSMUSG00000032890	ProperStrand	10	1	-inf
chr11	94936407	94937919	protein_coding	Itga3	intron	ENSMUSG00000001507	NonProperStrand	6	chr11	69669710	69669746	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	1	-8.1566
chr8	73757659	73757749	LTR	MTA_Mm	MaLR	chr8MTA_Mm73757570	NonProperStrand	1	chr9	75089836	75089916	protein_coding	Myo5c	intron	ENSMUSG00000033590	NonProperStrand	1	1	-inf
chr12	99645565	99645666	LTR	MTEb	MaLR	chr12MTEb99645561	ProperStrand	44	chr4	132309511	132309547	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-3.1035
chr2	132420523	132420603	LTR	MLT1F1	MaLR	chr2MLT1F1132420513	NonProperStrand	1	chr2	132420718	132420808	LTR	RLTR11B	ERVK	chr2RLTR11B132420695	NonProperStrand	1	1	-inf
chr10	5320609	5320689	protein_coding	Syne1	intron	ENSMUSG00000019769	ProperStrand	7	chr19	40244902	40244992	protein_coding	Cyp2c70	intron	ENSMUSG00000060613	ProperStrand	1	1	-inf
chr3	38588135	38588223	LTR	MTE2b	MaLR	chr3MTE2b38588092	NonProperStrand	1	chr4	117158753	117158833	protein_coding	Rnf220	intron	ENSMUSG00000028677	NonProperStrand	8	1	-inf
chr11	6619816	6619906	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	chr19	8888537	8888593	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-6.7860
chr3	75621451	75621470	LINE	L1_Mur2	L1	chr3L1_Mur275621050	NonProperStrand	4	chr11	105922647	105922663	SINE	PB1D9	Alu	chr11PB1D9105922641	ProperStrand	5	1	-17.7431
chr2	130276317	130276369	protein_coding	Ptpra	intron	ENSMUSG00000027303	ProperStrand	261	chr16	20692395	20692428	protein_coding	Eif4g1	exon	ENSMUSG00000045983	ProperStrand	2	1	-11.4177
chr6	83070661	83070741	protein_coding-noncoding	Wbp1	utr3	ENSMUSG00000030035	NonProperStrand	1	chr6	83070884	83070974	protein_coding	Wbp1	intron	ENSMUSG00000030035	NonProperStrand	1	1	-inf
chr10	122565733	122565823	protein_coding	Usp15	intron	ENSMUSG00000020124	NonProperStrand	23	chr8	10614971	10615051	protein_coding	Myo16	intron	ENSMUSG00000039057	ProperStrand	4	1	-14.5246
chr9	110064277	110064296	protein_coding	Smarcc1	intron	ENSMUSG00000032481	ProperStrand	9	chr16	23110837	23110866	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.1451
chr11	109011748	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr6	118121082	118121112	protein_coding	Ret	intron	ENSMUSG00000030110	ProperStrand	2	1	-7.3577
chr10	102850941	102850958	protein_coding	Slc6a15	intron	ENSMUSG00000019894	NonProperStrand	2	chr2	90395157	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-8.9527
chr17	39847778	39847854	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	chr12	59072784	59072811	Other	RMER1A	Other	chr12RMER1A59071967	NonProperStrand	1	1	-inf
chr9	20798459	20798593	SINE	ID_B1	B4	chr9ID_B120798426	NonProperStrand	1	chr11	87617860	87617877	protein_coding	Mpo	utr3	ENSMUSG00000009350	NonProperStrand	2	1	-inf
chr17	39848246	39848287	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	NonProperStrand	34	chr14	121491068	121491084	protein_coding	Farp1	intron	ENSMUSG00000025555	NonProperStrand	2	1	-15.5193
chr5	148775720	148775741	protein_coding	Mtus2	intron	ENSMUSG00000029651	ProperStrand	8	chr8	70895783	70895867	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-7.8755
chr3	123508021	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr16	23110479	23110509	snoRNA	ENSMUSG00000064880_SNORA63	.	ENSMUSG00000064880	ProperStrand	41	1	-3.4155
chr8	61971085	61971165	Low_complexity	T-rich	Low_complexity	chr8T-rich61971100	ProperStrand	1	chr8	61971268	61971358	SINE	PB1D10	Alu	chr8PB1D1061971225	ProperStrand	1	1	-inf
chr5	146261279	146261301	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr16	35981617	35981652	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-4.7573
chr3	123508023	123508067	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr9	123662887	123662909	protein_coding	Ccr9	intron	ENSMUSG00000029530	NonProperStrand	1	1	-inf
chr13	44869924	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	chr10	10877629	10877647	protein_coding	Shprh	intron	ENSMUSG00000090112	NonProperStrand	3	1	-8.8788
chr2	90395141	90395172	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr14	123095420	123095437	protein_coding	Pcca	intron	ENSMUSG00000041650	ProperStrand	17	1	-4.1533
chr6	37714413	37714493	LTR	RLTR14	ERV1	chr6RLTR1437714131	ProperStrand	1	chr6	37194905	37194995	protein_coding	Dgki	intron	ENSMUSG00000038665	NonProperStrand	7	1	-inf
chr19	45782702	45782724	Simple_repeat	(TCTCTG)n	Simple_repeat	chr19(TCTCTG)n45782686	NonProperStrand	1	chr13	95330598	95330736	protein_coding	Ap3b1	intron	ENSMUSG00000021686	ProperStrand	105	1	-inf
chr10	23785398	23785431	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr7	79305326	79305343	protein_coding	Mctp2	intron	ENSMUSG00000032776	NonProperStrand	9	1	-6.8232
mmu-miR-15a-5p	0	22	miRNA	mmu-miR-15a-5p	.	mmu-miR-15a-5p	ProperStrand	1	chr14	34427731	34427815	protein_coding	Ptpn20	intron	ENSMUSG00000021940	NonProperStrand	3	1	-inf
chr12	39760020	39760038	LINE	L1_Mm	L1	chr12L1_Mm39759525	NonProperStrand	2	chr2	5379295	5379341	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-9.4768
chr8	53517476	53517566	LINE	L1Md_A	L1	chr8L1Md_A53512174	NonProperStrand	1	chr8	53517617	53517697	LINE	L1Md_A	L1	chr8L1Md_A53517559	NonProperStrand	1	1	-inf
chr14	32191952	32192040	protein_coding	Sh3bp5	intron	ENSMUSG00000021892	ProperStrand	25	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	2	-7.3660
chr17	39848099	39848442	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr5	146260994	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	5	-3.1265
chr17	39847381	39847416	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	140717046	140717136	protein_coding	Fbxo42	intron	ENSMUSG00000028920	ProperStrand	7	1	-3.5679
chrX	123103877	123103894	LINE	L1Md_F2	L1	chrXL1Md_F2123101369	ProperStrand	8	chr13	44869593	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-6.6679
chr12	11091995	11092011	LINE	Lx8	L1	chr12Lx811091971	ProperStrand	3	chr4	149120028	149120044	protein_coding	Slc25a33	intron	ENSMUSG00000028982	NonProperStrand	531	1	-8.9012
chr10	21480509	21480530	LINE	L1MB7	L1	chr10L1MB721480231	ProperStrand	3	chr17	39847648	39847691	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-5.4090
chr14	100000895	100000915	SINE	B1F	Alu	chr14B1F100000808	ProperStrand	1	chr9	123462011	123462030	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr3	123507936	123507959	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr10	127651415	127651444	SINE	B2_Mm2	B2	chr10B2_Mm2127651387	ProperStrand	1	1	-inf
chr7	126687291	126687381	LINE	Lx2B	L1	chr7Lx2B126687273	NonProperStrand	1	chr7	126686921	126687001	protein_coding	Acsm5	utr3	ENSMUSG00000030972	ProperStrand	2	1	-inf
chr11	109011745	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr9	54321853	54321875	protein_coding	Dmxl2	utr5	ENSMUSG00000041268	ProperStrand	2	1	-7.3577
mmu-miR-5114	2	21	miRNA	mmu-miR-5114	.	mmu-miR-5114	ProperStrand	1	chr2	32963317	32963360	protein_coding	Garnl3	intron	ENSMUSG00000038860	NonProperStrand	289	1	-inf
chr14	77673276	77673356	protein_coding	Enox1	intron	ENSMUSG00000022012	ProperStrand	10	chr15	57864585	57864675	protein_coding	9130401M01Rik	intron	ENSMUSG00000022362	ProperStrand	4	4	-inf
chr1	179137354	179137372	protein_coding	Akt3	intron	ENSMUSG00000019699	NonProperStrand	8	chr2	90395156	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-5.6660
chr5	146261131	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr17	21560411	21560428	protein_coding	Zfp54	utr5	ENSMUSG00000023882	ProperStrand	1	1	-inf
chr11	102125390	102125480	protein_coding-noncoding	BC030867	utr5	ENSMUSG00000034773	NonProperStrand	1	chr11	102125528	102125608	protein_coding	BC030867	intron	ENSMUSG00000034773	NonProperStrand	1	1	-inf
chrX	74272586	74272620	SINE	B3	B2	chrXB374272477	NonProperStrand	1	chr7	73552493	73552603	protein_coding	Aldh1a3	intron	ENSMUSG00000015134	NonProperStrand	3	1	-inf
chr16	10516157	10516257	protein_coding	Ciita	intron	ENSMUSG00000022504	ProperStrand	1	chr9	123462035	123462105	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr17	39846453	39846879	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	50420129	50420161	protein_coding	Dazl	utr3	ENSMUSG00000010592	ProperStrand	23	2	-3.4877
chr4	55326283	55326363	LTR	RLTR45-int	ERVK	chr4RLTR45-int55325735	ProperStrand	1	chr4	55326453	55326543	LTR	RLTR45-int	ERVK	chr4RLTR45-int55326336	ProperStrand	1	1	-inf
chr13	51210091	51210171	protein_coding	Spin1	intron	ENSMUSG00000021395	ProperStrand	3	chr8	64490167	64490257	protein_coding	Ddx60	intron	ENSMUSG00000037921	NonProperStrand	1	1	-inf
chr16	13416244	13416334	protein_coding	Mkl2	utr3	ENSMUSG00000009569	NonProperStrand	3	chr4	59389290	59389370	protein_coding	Susd1	intron	ENSMUSG00000038578	NonProperStrand	4	1	-18.9366
chr9	123462105	123462133	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr14	7824264	7824320	protein_coding	Gm10406	intron	ENSMUSG00000072735	NonProperStrand	13	1	-4.0251
chr11	116745310	116745400	SINE	B2_Mm1t	B2	chr11B2_Mm1t116745217	ProperStrand	1	chr11	116745434	116745514	SINE	ID_B1	B4	chr11ID_B1116745408	ProperStrand	1	1	-inf
chr2	92360752	92360819	lincRNA	Gm13814	intron	ENSMUSG00000085261	ProperStrand	2	chr9	15314877	15314921	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-10.7903
chr2	5304252	5379344	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr2	122123774	122123794	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	12	-8.0887
chr17	39847655	39847690	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr6	88507323	88507349	protein_coding	Kbtbd12	intron	ENSMUSG00000033182	ProperStrand	3	1	-5.4090
chr7	29446474	29446564	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	chr7	28351555	28351635	protein_coding	2310022A10Rik	intron	ENSMUSG00000049643	ProperStrand	63	1	-8.8406
chr17	39846454	39846498	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr17	57022925	57022959	protein_coding	1700061G19Rik	intron	ENSMUSG00000024209	NonProperStrand	3	1	-5.9338
chr17	39846745	39846776	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr13	51648197	51648293	protein_coding	Shc3	intron	ENSMUSG00000021448	NonProperStrand	20	2	-3.8620
chr10	91118347	91118382	LTR	MLT2B1	ERVL	chr10MLT2B191118349	ProperStrand	36	mmu-miR-1291	1	26	miRNA	mmu-miR-1291	.	mmu-miR-1291	ProperStrand	12	1	-11.2173
chr13	40860932	40860951	LTR	MTEa	MaLR	chr13MTEa40860700	NonProperStrand	1	chr4	132309943	132310015	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-inf
chr17	39847326	39847367	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	NonProperStrand	64	chr8	70071544	70071817	protein_coding	Nat3	exon	ENSMUSG00000056426	NonProperStrand	1	1	-inf
chr4	132310014	132310064	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr5	124725229	124725245	protein_coding	Mphosph9	intron	ENSMUSG00000038126	NonProperStrand	1	1	-inf
chr19	59168592	59168610	LINE	L1Md_F2	L1	chr19L1Md_F259168312	ProperStrand	1	chr1	76771378	76771395	LTR	IAPEz-int	ERVK	chr1IAPEz-int76771120	ProperStrand	1	1	-inf
chr17	84284445	84284550	DNA	Zaphod	Tip100	chr17Zaphod84284320	ProperStrand	1	chr8	119941527	119941574	protein_coding	4933407C03Rik	intron	ENSMUSG00000034390	ProperStrand	13	1	-inf
chr15	85177760	85177788	protein_coding	Atxn10	intron	ENSMUSG00000016541	ProperStrand	25	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-4.6310
chr17	39847216	39847261	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	35728774	35728790	protein_coding	Ttll11	intron	ENSMUSG00000026885	ProperStrand	4	1	-6.8874
chr8	95991152	95991232	LTR	IAPLTR3-int	ERVK	chr8IAPLTR3-int95991065	ProperStrand	1	chr8	95990893	95990983	LTR	IAPLTR3	ERVK	chr8IAPLTR395990739	ProperStrand	1	1	-inf
chr17	79713735	79713782	LTR	RLTR20A	ERVK	chr17RLTR20A79713612	NonProperStrand	1	chr12	105031131	105031214	pseudogene	Gm17043	.	ENSMUSG00000090466	ProperStrand	56	1	-inf
chr11	55482774	55482824	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr7	29446473	29446574	LTR	RMER6A	ERVK	chr7RMER6A29446469	ProperStrand	22	1	-8.0403
chr2	89797331	89797421	LINE	L1_Mus2	L1	chr2L1_Mus289794492	NonProperStrand	1	chr2	89797539	89797619	LTR	RLTR13D4	ERVK	chr2RLTR13D489797522	NonProperStrand	1	1	-inf
chr10	91182135	91182154	SINE	MIR	MIR	chr10MIR91182034	NonProperStrand	3	chr16	55866477	55866493	protein_coding	Fam55c	exon	ENSMUSG00000075033	NonProperStrand	1	1	-inf
chr2	156426480	156426544	LINE	L1M5	L1	chr2L1M5156426413	NonProperStrand	1	chr2	156427108	156427180	SINE	B1_Mus1	Alu	chr2B1_Mus1156427085	NonProperStrand	1	1	-inf
chr4	57313030	57313120	lincRNA	Gm12536	exon	ENSMUSG00000085654	ProperStrand	1	chr4	57312666	57312746	protein_coding	Ptpn3	intron	ENSMUSG00000038764	NonProperStrand	5	1	-inf
chr10	88475388	88475404	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	11	chr2	122123774	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-6.2722
chrX	74288500	74288664	LTR	MTA_Mm	MaLR	chrXMTA_Mm74288432	ProperStrand	1	chr2	90395148	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr13	9834308	9834371	LINE	L1Md_T	L1	chr13L1Md_T9831266	ProperStrand	16	chr19	8888600	8888675	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-6.1993
chr14	27379477	27379557	SINE	B2_Mm1t	B2	chr14B2_Mm1t27379423	NonProperStrand	1	chr14	27379766	27379856	SINE	ID_B1	B4	chr14ID_B127379749	ProperStrand	1	1	-inf
chr8	122867789	122867808	protein_coding	Gm20388	intron	ENSMUSG00000092329	ProperStrand	59	chr17	36231387	36231422	pseudogene	Gm20530	.	ENSMUSG00000092304	NonProperStrand	1	1	-inf
chr9	18609426	18609516	LINE	L1_Mm	L1	chr9L1_Mm18609366	NonProperStrand	1	chr9	18609168	18609248	LINE	Lx	L1	chr9Lx18608532	NonProperStrand	1	1	-inf
chr16	15876018	15876108	LTR	MMVL30-int	ERV1	chr16MMVL30-int15875893	NonProperStrand	2	chr16	15875795	15875875	LTR	RLTR6-int	ERV1	chr16RLTR6-int15875773	NonProperStrand	1	1	-inf
chr11	55482748	55482772	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr2	125658530	125658549	protein_coding	Cops2	intron	ENSMUSG00000027206	ProperStrand	1	1	-inf
chr11	109011746	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr1	63178703	63179084	lincRNA	Gm11602	intron	ENSMUSG00000084799	ProperStrand	23	3	-6.0127
chr4	43435170	43435250	protein_coding-noncoding	Rusc2	utr5	ENSMUSG00000035969	ProperStrand	1	chr4	43435355	43435445	protein_coding	Rusc2	exon	ENSMUSG00000035969	ProperStrand	2	1	-inf
chr11	89791755	89791845	LINE	L1Md_F2	L1	chr11L1Md_F289791654	NonProperStrand	1	chr3	135260285	135260365	protein_coding	Nfkb1	intron	ENSMUSG00000028163	NonProperStrand	2	1	-inf
chr14	47667850	47667895	protein_coding	Samd4	intron	ENSMUSG00000021838	ProperStrand	4	chr16	23110835	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr12	3109962	3110042	Satellite	GSAT_MM	Satellite	chr12GSAT_MM3109871	NonProperStrand	2	chr1	132383445	132383535	lincRNA	Gm16083	intron	ENSMUSG00000085526	ProperStrand	5	2	-inf
chr1	161036090	161036107	DNA	MER63B	AcHobo	chr1MER63B161035791	ProperStrand	8	chr11	109011795	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	1	-4.1268
chr16	8946998	8947016	SINE	B1_Mus2	Alu	chr16B1_Mus28946958	ProperStrand	1	chr2	158358355	158358474	protein_coding	Arhgap40	intron	ENSMUSG00000074625	NonProperStrand	133	1	-inf
chr17	39847279	39847299	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr1	93420467	93420485	protein_coding	Traf3ip1	intron	ENSMUSG00000034292	ProperStrand	5	1	-6.3853
chr8	70895760	70895829	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	chr13	113466477	113466494	protein_coding	Slc38a9	intron	ENSMUSG00000047789	NonProperStrand	1	1	-inf
chr3	87086571	87088172	LINE	L1Md_F2	L1	chr3L1Md_F287085258	NonProperStrand	1	chr5	146261154	146261192	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	1	-inf
chr11	78181738	78181754	protein_coding	Foxn1	intron	ENSMUSG00000002057	ProperStrand	9	chr14	63462656	63462675	protein_coding	Wdfy2	intron	ENSMUSG00000014547	ProperStrand	7	1	-15.2227
chr6	17621476	17621556	LTR	IAPEY2_LTR	ERVK	chr6IAPEY2_LTR17621412	NonProperStrand	1	chr6	17621830	17621920	SINE	B1_Mur2	Alu	chr6B1_Mur217621843	ProperStrand	1	1	-inf
chr11	109011818	109011847	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr8	83673223	83673240	LINE	L1_Mur1	L1	chr8L1_Mur183672975	NonProperStrand	4	1	-5.5999
chr12	58761969	58761985	protein_coding	Ttc6	intron	ENSMUSG00000046782	NonProperStrand	13	chr7	141984950	141985435	protein_coding	Dock1	intron	ENSMUSG00000058325	NonProperStrand	24	1	-11.8748
chr11	55482712	55482772	LINE	L1Md_A	L1	chr11L1Md_A55477511	NonProperStrand	94	chr7	126781150	126781235	protein_coding	Acsm1	intron	ENSMUSG00000033533	ProperStrand	4	1	-11.6769
chr19	13688522	13688612	LINE	L1_Mus3	L1	chr19L1_Mus313688207	ProperStrand	1	chr7	47188380	47188460	SINE	B3A	B2	chr7B3A47188341	NonProperStrand	10	1	-inf
chr11	6528051	6528083	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr3	116641288	116641312	protein_coding	Palmd	intron	ENSMUSG00000033377	ProperStrand	1	1	-inf
chr1	34606444	34606462	protein_coding	Prss40	intron	ENSMUSG00000037529	ProperStrand	2	chr13	44869678	44869702	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-9.9728
chr17	39846427	39846500	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr3	86138017	86138855	protein_coding	Lrba	intron	ENSMUSG00000028080	NonProperStrand	14	2	-4.8701
chr11	6528089	6528165	LTR	RMER6A	ERVK	chr11RMER6A6527613	ProperStrand	110	chr11	6619807	6619880	processed_transcript	Gm11981	.	ENSMUSG00000086808	ProperStrand	12	1	-8.9707
chr9	80682378	80682459	LINE	Lx9	L1	chr9Lx980682204	NonProperStrand	1	chr9	80682635	80682725	LTR	RMER12	ERVK	chr9RMER1280682576	NonProperStrand	1	1	-inf
chrX	35739629	35739646	LINE	Lx9	L1	chrXLx935738105	NonProperStrand	1	chr3	123507995	123508021	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	1	-inf
chr17	39847844	39847975	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr10	12363422	12363453	protein_coding	Utrn	intron	ENSMUSG00000019820	NonProperStrand	8	1	-3.3062
chr19	53442827	53442907	protein_coding	Mxi1	intron	ENSMUSG00000025025	ProperStrand	1	chr4	59233860	59233950	protein_coding	Ugcg	utr3	ENSMUSG00000028381	ProperStrand	1	1	-inf
chr2	90395130	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr7	127527952	127528007	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-3.5774
chr10	128084164	128084214	lincRNA	Gm17336	intron	ENSMUSG00000091431	ProperStrand	6	chr9	123462121	123462153	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-5.5993
chr7	110046440	110046476	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr15	31418840	31418858	protein_coding	March6	intron	ENSMUSG00000039100	ProperStrand	4	1	-11.8094
chr4	132309568	132309600	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr18	34372944	34372960	pseudogene	Gm10548	.	ENSMUSG00000073607	NonProperStrand	1	1	-inf
chr5	146261284	146261303	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	chr5	35043954	35044162	protein_coding	Grk4	intron	ENSMUSG00000052783	ProperStrand	3	1	-12.0173
chr8	75080962	75081042	SINE	B2_Mm1t	B2	chr8B2_Mm1t75080869	NonProperStrand	1	chr8	75080438	75080528	SINE	B2_Mm2	B2	chr8B2_Mm275080450	NonProperStrand	1	1	-inf
chr16	11144021	11144148	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	chrX	6430179	6430197	protein_coding	Dgkk	intron	ENSMUSG00000062393	ProperStrand	3	1	-13.8094
chr2	162906619	162906635	protein_coding	Mybl2	intron	ENSMUSG00000017861	NonProperStrand	3	chr4	132309940	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-8.6506
chr11	63326709	63326789	LINE	L1MEg	L1	chr11L1MEg63326672	ProperStrand	5	chr11	63326812	63326903	SINE	B1_Mur1	Alu	chr11B1_Mur163326782	NonProperStrand	5	5	-inf
chr7	12930796	12930841	LTR	MTD	MaLR	chr7MTD12930766	NonProperStrand	4	chr16	23110835	23110867	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-6.8931
chr7	141448813	141448893	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr11	116107798	116107888	protein_coding	Srp68	intron	ENSMUSG00000020780	ProperStrand	3	1	-13.4122
chr17	39847471	39847529	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr3	64194995	64195013	protein_coding	Vmn2r4	intron	ENSMUSG00000092049	ProperStrand	1	1	-inf
chr15	13751624	13751704	LINE	L1_Mus4	L1	chr15L1_Mus413751386	NonProperStrand	1	chr15	13751835	13751925	LINE	L1_Mus4	L1	chr15L1_Mus413751826	ProperStrand	1	1	-inf
chr11	109012015	109012047	Simple_repeat	(TATATG)n	Simple_repeat	chr11(TATATG)n109012018	NonProperStrand	119	chr13	97190541	97190623	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	3	-4.5718
chr13	118076443	118076523	LINE	L1_Mur3	L1	chr13L1_Mur3118076445	NonProperStrand	1	chr13	118068730	118068820	SINE	B3A	B2	chr13B3A118068707	NonProperStrand	1	1	-inf
chr1	75189966	75190056	processed_transcript	Ankzf1	.	ENSMUSG00000026199	ProperStrand	2	chr1	75178367	75178447	protein_coding	Atg9a	utr3	ENSMUSG00000033124	ProperStrand	1	1	-inf
chr19	58605682	58605699	protein_coding	1700011F14Rik	intron	ENSMUSG00000025090	NonProperStrand	1	chr16	23110837	23110885	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-inf
chr2	135190071	135190151	antisense	9630028H03Rik	.	ENSMUSG00000085631	ProperStrand	4	chr12	72059608	72059698	protein_coding	Actr10	intron	ENSMUSG00000021076	ProperStrand	2	1	-19.9239
chr10	56223070	56223150	LTR	ORR1D1	MaLR	chr10ORR1D156222893	ProperStrand	1	chr10	56223367	56223457	SINE	RSINE1	B4	chr10RSINE156223348	ProperStrand	1	1	-inf
chr11	97781662	97781761	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	chr15	34440788	34440887	protein_coding	Pop1	intron	ENSMUSG00000022325	NonProperStrand	206	3	-7.3287
chr16	23110382	23110453	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr13	49684298	49684376	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	2	-4.3931
chr4	30045863	30045880	LTR	RLTR23	ERV1	chr4RLTR2330045552	NonProperStrand	1	chr9	15315231	15315249	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-inf
chr11	97781693	97781746	DNA	MER81	AcHobo	chr11MER8197781652	ProperStrand	148	mmu-miR-3473b	0	17	miRNA	mmu-miR-3473b	.	mmu-miR-3473b	ProperStrand	8	1	-9.2306
chr14	82928104	82928194	LTR	MMERVK10C-int	ERVK	chr14MMERVK10C-int82923427	ProperStrand	1	chr14	82928586	82928666	LTR	MMERVK10C-int	ERVK	chr14MMERVK10C-int82928382	ProperStrand	1	1	-inf
chr8	57958348	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr9	123461872	123462004	protein_coding	Sacm1l	exon	ENSMUSG00000025240	ProperStrand	1261	2	-3.4527
chr17	24720779	24720850	protein_coding	Pkd1	intron	ENSMUSG00000032855	ProperStrand	317	chr1	131573997	131574026	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-3.5838
chr5	121205007	121205088	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr17	66119070	66119088	protein_coding	Rab31	intron	ENSMUSG00000056515	NonProperStrand	6	1	-8.3184
chr8	124940368	124940458	protein_coding	Zc3h18	utr3	ENSMUSG00000017478	NonProperStrand	2	chr9	123461965	123462036	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-8.2644
chr6	4523615	4524125	SINE	ID_B1	B4	chr6ID_B14523572	NonProperStrand	4	chr11	110326651	110326668	protein_coding	Map2k6	intron	ENSMUSG00000020623	NonProperStrand	3	2	-23.7005
chr4	79120790	79120811	LINE	L1Md_F2	L1	chr4L1Md_F279119704	NonProperStrand	1	chr9	31097173	31097562	protein_coding	Prdm10	intron	ENSMUSG00000042496	NonProperStrand	4	1	-inf
chrX	130546869	130546949	LINE	L1M4b	L1	chrXL1M4b130546812	NonProperStrand	1	chrX	130546468	130546558	LTR	ERVL-int	ERVL	chrXERVL-int130546365	NonProperStrand	1	1	-inf
chr12	69369436	69369526	LINE	Lx5	L1	chr12Lx569369059	NonProperStrand	1	chr12	69369752	69369832	LINE	Lx5	L1	chr12Lx569369755	NonProperStrand	1	1	-inf
chr11	99017074	99017135	LTR	RLTR25B	ERVK	chr11RLTR25B99017055	ProperStrand	18	chr11	51737815	51737915	SINE	B3	B2	chr11B351737669	NonProperStrand	6	1	-14.1116
chr17	39848099	39848154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	chr5	72957570	72957586	LTR	MMERGLN-int	ERV1	chr5MMERGLN-int72956975	ProperStrand	1	1	-inf
chr11	103649631	103649648	protein_coding	Wnt3	intron	ENSMUSG00000000125	NonProperStrand	3	chr2	90395144	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.8617
chr5	76061918	76062008	LTR	MTA_Mm	MaLR	chr5MTA_Mm76061613	NonProperStrand	1	chr5	76062065	76062145	LTR	ORR1D1	MaLR	chr5ORR1D176062007	NonProperStrand	1	1	-inf
chr3	76762863	76762953	LINE	Lx6	L1	chr3Lx676762803	ProperStrand	1	chr3	76762740	76762820	LTR	ORR1B2	MaLR	chr3ORR1B276762443	NonProperStrand	1	1	-inf
chr10	81387986	81388020	LTR	ORR1A2-int	MaLR	chr10ORR1A2-int81387913	NonProperStrand	2	chr17	39846847	39846922	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-7.0123
chrX	12034542	12034622	LINE	Lx8	L1	chrXLx812034524	ProperStrand	1	chrX	12034418	12034508	SINE	B3A	B2	chrXB3A12034413	ProperStrand	1	1	-inf
chr11	109011749	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr18	34759721	34759743	protein_coding	Brd8	utr3	ENSMUSG00000003778	ProperStrand	2	1	-7.3577
chr4	129328670	129334565	protein_coding	Kpna6	intron	ENSMUSG00000003731	ProperStrand	2	chr13	56193165	56193185	protein_coding	H2afy	intron	ENSMUSG00000015937	NonProperStrand	2	1	-21.5566
chr6	30276899	30276918	lincRNA	1700095J07Rik	intron	ENSMUSG00000084861	ProperStrand	1	chr13	97190541	97190569	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-inf
chr17	39846766	39846823	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr16	93884482	93884582	protein_coding	Chaf1b	utr5	ENSMUSG00000022945	ProperStrand	1	1	-inf
chr12	59040422	59040498	LINE	L1Md_T	L1	chr12L1Md_T59036668	NonProperStrand	4	chr17	39847901	39847972	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-4.7422
chr1	19471164	19471254	LINE	L1Md_F2	L1	chr1L1Md_F219471152	NonProperStrand	1	chr2	150242442	150242522	protein_coding	Zfp442	intron	ENSMUSG00000068130	ProperStrand	2	1	-inf
chr11	106501242	106501322	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr4	139338096	139338123	protein_coding	Pax7	intron	ENSMUSG00000028736	NonProperStrand	5	1	-9.6840
chr2	121013702	121013792	protein_coding-noncoding	Tubgcp4	utr5	ENSMUSG00000027263	NonProperStrand	1	chr2	121013901	121013981	protein_coding	Tubgcp4	intron	ENSMUSG00000027263	NonProperStrand	1	1	-inf
chr17	39847844	39847944	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr15	76503556	76503573	protein_coding	Ppp1r16a	intron	ENSMUSG00000033819	ProperStrand	1	1	-inf
chr10	3657304	3657323	LTR	RLTR40	ERVK	chr10RLTR403656930	ProperStrand	2	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-13.1695
chr19	22852040	22852100	protein_coding	Trpm3	intron	ENSMUSG00000052387	ProperStrand	12	chr17	81838285	81838305	protein_coding	Slc8a1	intron	ENSMUSG00000054640	ProperStrand	5	1	-15.3570
chr15	64537431	64537521	protein_coding	Adcy8	intron	ENSMUSG00000022376	ProperStrand	5	chr15	64185075	64185155	protein_coding	Asap1	intron	ENSMUSG00000022377	NonProperStrand	7	1	-16.5030
chr10	23785342	23785432	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr7	127527969	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-4.9249
chr17	24939342	24939422	SINE	B1_Mm	Alu	chr17B1_Mm24939280	ProperStrand	1	chr17	24939058	24939148	SINE	RSINE1	B4	chr17RSINE124939005	ProperStrand	1	1	-inf
chr5	114851986	114852004	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr11	74905482	74905507	protein_coding	Smg6	intron	ENSMUSG00000038290	ProperStrand	2	1	-10.8185
chr9	85812178	85812258	LTR	IAPEz-int	ERVK	chr9IAPEz-int85811777	NonProperStrand	1	chr9	85812479	85812569	LTR	IAPEz-int	ERVK	chr9IAPEz-int85812408	NonProperStrand	1	1	-inf
chr16	26602783	26602801	protein_coding	Il1rap	intron	ENSMUSG00000022514	NonProperStrand	4	chr13	97190569	97190587	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.1245
chr5	30060603	30060693	SINE	B2_Mm2	B2	chr5B2_Mm230060577	ProperStrand	8	chr5	30060442	30060522	SINE	PB1D9	Alu	chr5PB1D930060465	NonProperStrand	1	1	-inf
chr5	114851986	114852032	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr14	23421076	23421093	protein_coding	1700112E06Rik	intron	ENSMUSG00000063458	NonProperStrand	7	1	-7.7889
chr1	111755009	111755089	LINE	L1VL4	L1	chr1L1VL4111755006	NonProperStrand	1	chr1	111755168	111755258	SINE	B4	B4	chr1B4111755145	ProperStrand	1	1	-inf
chr15	55811138	55811228	Other	RMER1C	Other	chr15RMER1C55811091	ProperStrand	1	chr8	13417150	13417230	protein_coding	Grk1	utr3	ENSMUSG00000031450	NonProperStrand	5	1	-inf
chr11	39145522	39145612	LINE	L1M4	L1	chr11L1M439145481	ProperStrand	1	chr11	39145033	39145113	LTR	RMER19C	ERVK	chr11RMER19C39144935	ProperStrand	1	1	-inf
chr17	39847428	39847527	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr2	84839254	84839272	protein_coding	P2rx3	exon	ENSMUSG00000027071	ProperStrand	2	1	-6.4812
chr11	23804583	23804663	SINE	B1_Mus1	Alu	chr11B1_Mus123804533	ProperStrand	1	chr11	23804768	23804858	SINE	B3	B2	chr11B323804711	NonProperStrand	1	1	-inf
chr7	109520198	109520223	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr10	64087885	64087901	protein_coding	Ctnna3	intron	ENSMUSG00000060843	NonProperStrand	12	1	-6.6088
chr11	106501239	106501323	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr13	54190151	54190183	protein_coding	Sfxn1	intron	ENSMUSG00000021474	NonProperStrand	54	2	-7.9556
chr5	30060683	30060773	SINE	B2_Mm2	B2	chr5B2_Mm230060577	NonProperStrand	6	chr5	50650524	50650604	protein_coding	Gm7205	intron	ENSMUSG00000067313	ProperStrand	1	1	-inf
chr6	108482997	108485281	protein_coding	Itpr1	intron	ENSMUSG00000030102	ProperStrand	8	chr16	23110836	23110865	snoRNA	ENSMUSG00000087935_Snora81	.	ENSMUSG00000087935	ProperStrand	1031	1	-5.3877
chr10	23785413	23785462	LINE	L1_Mus3	L1	chr10L1_Mus323784332	NonProperStrand	438	chr19	59261443	59262945	SINE	B4A	B4	chr19B4A59261379	NonProperStrand	1	1	-inf
chr5	54326508	54326598	LINE	L1_Mus3	L1	chr5L1_Mus354326473	ProperStrand	1	chr5	54326205	54326285	LTR	MLT1K	MaLR	chr5MLT1K54325972	NonProperStrand	1	1	-inf
chr17	39846765	39846847	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	NonProperStrand	119	chr6	3201470	3201571	LTR	IAPEz-int	ERVK	chr6IAPEz-int3199966	NonProperStrand	20	2	-12.4825
chr8	26823042	26823122	protein_coding	Whsc1l1	intron	ENSMUSG00000054823	NonProperStrand	1	chr19	29014728	29014818	protein_coding	4430402I18Rik	intron	ENSMUSG00000064202	NonProperStrand	3	1	-inf
chr16	18240740	18240830	protein_coding	Ranbp1	intron	ENSMUSG00000005732	ProperStrand	26	chr7	4740128	4740151	protein_coding	2210411K11Rik	intron	ENSMUSG00000030431	ProperStrand	6	1	-13.3588
chr13	100978803	100978883	LTR	IAPEY_LTR	ERVK	chr13IAPEY_LTR100978808	NonProperStrand	1	chr13	100978519	100978609	LTR	RLTR14	ERV1	chr13RLTR14100978454	NonProperStrand	1	1	-inf
chr11	3510215	3510305	LTR	ORR1A1	MaLR	chr11ORR1A13510001	NonProperStrand	1	chr11	3509804	3509884	LTR	RMER15-int	ERVL	chr11RMER15-int3509750	NonProperStrand	1	1	-inf
chr7	78840190	78843259	LINE	L1MCa	L1	chr7L1MCa78842800	NonProperStrand	1	chr7	78843279	78843359	LINE	L1MCa	L1	chr7L1MCa78842986	NonProperStrand	1	1	-inf
chr8	57958349	57958365	LTR	MYSERV-int	ERVK	chr8MYSERV-int57958219	NonProperStrand	43	chr13	44869606	44869667	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-3.3516
chr15	25018927	25019017	LTR	MLT1F2	MaLR	chr15MLT1F225018887	NonProperStrand	1	chr15	25018571	25018651	LTR	RLTR1B-int	ERV1	chr15RLTR1B-int25017388	NonProperStrand	1	1	-inf
chr12	78350927	78351003	protein_coding	Fut8	intron	ENSMUSG00000021065	ProperStrand	25	chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	1	-7.8902
chr4	132352503	132352527	LTR	MTD	MaLR	chr4MTD132352456	ProperStrand	248	chr7	127527903	127528003	protein_coding	Abca15	intron	ENSMUSG00000054746	ProperStrand	23	1	-6.0305
chrX	18610530	18610620	LINE	L1Md_F2	L1	chrXL1Md_F218606314	ProperStrand	1	chrX	19587803	19587883	SINE	B4A	B4	chrXB4A19587794	NonProperStrand	1	1	-inf
chr1	32910476	32910566	SINE	B4	B4	chr1B432910471	ProperStrand	1	chr7	103550767	103550847	protein_coding	Odz4	intron	ENSMUSG00000048078	NonProperStrand	16	1	-inf
chr3	123507984	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr5	146261278	146261302	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146261281	NonProperStrand	112	2	-3.1402
chr13	107495641	107495721	LINE	L1Md_F2	L1	chr13L1Md_F2107494869	ProperStrand	1	chr13	107495928	107496018	LTR	MTD	MaLR	chr13MTD107495867	ProperStrand	1	1	-inf
chr17	39847222	39847297	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr5	74093616	74093642	Simple_repeat	(GA)n	Simple_repeat	chr5(GA)n74093607	ProperStrand	11	1	-4.7331
chr17	39847187	39847242	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr2	164950706	164950723	protein_coding	Cdh22	intron	ENSMUSG00000053166	ProperStrand	6	1	-5.9886
chr15	98519714	98519734	LTR	ORR1C1	MaLR	chr15ORR1C198519301	ProperStrand	11	chr11	116843218	116843234	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-12.4016
chr1	43177196	43177276	LTR	ORR1D1	MaLR	chr1ORR1D143177178	NonProperStrand	1	chr1	44753362	44753452	protein_coding	Gulp1	intron	ENSMUSG00000056870	ProperStrand	2	1	-inf
chr3	37481548	37481591	LTR	MTA_Mm	MaLR	chr3MTA_Mm37481265	ProperStrand	7	chr4	132309946	132310013	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-6.7251
chr17	39847442	39848008	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr4	132309465	132310369	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	40	-7.5746
chr16	44133383	44133463	protein_coding	Atp6v1a	intron	ENSMUSG00000052459	ProperStrand	1	chr16	42018076	42018166	protein_coding	Lsamp	intron	ENSMUSG00000061080	ProperStrand	4	1	-inf
chr5	130243256	130243272	protein_coding	Gbas	intron	ENSMUSG00000029432	NonProperStrand	3	chr5	107907376	107907470	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-11.4177
chr4	58724248	58724328	SINE	ID_B1	B4	chr4ID_B158724266	NonProperStrand	1	chr4	58724585	58724675	SINE	ID_B1	B4	chr4ID_B158724548	ProperStrand	1	1	-inf
chr9	48139269	48139349	protein_coding-noncoding	Fam55b	utr3	ENSMUSG00000032028	ProperStrand	1	chr9	48139146	48139236	protein_coding	Fam55b	intron	ENSMUSG00000032028	ProperStrand	1	1	-inf
chr16	23111317	23111362	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr4	35820270	35820289	protein_coding	Lingo2	intron	ENSMUSG00000045083	NonProperStrand	9	1	-5.4552
chr3	123507989	123508055	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr5	35266215	35266236	protein_coding	A930005I04Rik	utr3	ENSMUSG00000051246	NonProperStrand	9	1	-6.3956
chr5	115490378	115490402	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	6	chr8	70895760	70895889	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	1	-8.4947
chr7	141448802	141448888	LTR	MTC	MaLR	chr7MTC141448583	ProperStrand	56	chr15	99603002	99603021	antisense	Gm17058	.	ENSMUSG00000090406	NonProperStrand	3	1	-13.4122
chr7	110046431	110046457	LTR	MTEa	MaLR	chr7MTEa110046435	NonProperStrand	88	chr11	116843218	116843234	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-8.1719
chr5	150953042	150953058	protein_coding	Fry	intron	ENSMUSG00000056602	ProperStrand	89	chr1	34433138	34433156	protein_coding	Gm11158	intron	ENSMUSG00000079617	NonProperStrand	5	1	-11.2766
chr1	191752486	191752566	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n191752451	ProperStrand	1	chr1	191752657	191752747	Simple_repeat	(CA)n	Simple_repeat	chr1(CA)n191752675	ProperStrand	1	1	-inf
chr2	90395156	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-4.0430
chr5	135054039	135054104	LINE	L1Md_F2	L1	chr5L1Md_F2135054047	NonProperStrand	9	chr17	39846757	39846834	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	1	-3.5690
chr10	96120957	96121037	LINE	L1MC1	L1	chr10L1MC196119975	ProperStrand	3	chr10	96121167	96121257	SINE	B4A	B4	chr10B4A96121169	NonProperStrand	3	3	-inf
chr16	23110755	23110802	protein_coding	Eif4a2	exon	ENSMUSG00000022884	ProperStrand	149	chr8	126944866	126944980	protein_coding	Pgbd5	intron	ENSMUSG00000050751	ProperStrand	152	2	-5.7694
chr4	133071219	133071241	SINE	ID4_	ID	chr4ID4_133071218	NonProperStrand	1	chr3	108554367	108554421	protein_coding	Aknad1	intron	ENSMUSG00000049565	ProperStrand	1	1	-inf
chr17	33988684	33988774	LINE	L1MB5	L1	chr17L1MB533988673	ProperStrand	1	chr17	33988802	33988882	SINE	PB1D10	Alu	chr17PB1D1033988824	NonProperStrand	1	1	-inf
chr4	10899207	10899223	LTR	MTD	MaLR	chr4MTD10899172	NonProperStrand	4	chr13	97190551	97190570	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	1	-8.1245
chr17	39847185	39847219	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chrX	110926461	110926478	protein_coding	Dach2	intron	ENSMUSG00000025592	NonProperStrand	2	1	-8.6616
chr15	36608654	36608720	LINE	L1Md_A	L1	chr15L1Md_A36603133	ProperStrand	3	chr17	39848099	39848154	LTR	IAPLTR2a	ERVK	chr17IAPLTR2a39848073	ProperStrand	363	1	-9.6614
chr3	123507999	123508066	LTR	RMER19C	ERVK	chr3RMER19C123507664	NonProperStrand	544	chr2	152677785	152677804	protein_coding	Tpx2	intron	ENSMUSG00000027469	NonProperStrand	1	1	-inf
chr8	83673223	83673240	LINE	L1_Mur1	L1	chr8L1_Mur183672975	NonProperStrand	4	chr8	95746114	95746141	protein_coding	Ces1e	intron	ENSMUSG00000061959	ProperStrand	57	1	-12.6837
chr17	94848664	94848755	LINE	L1VL4	L1	chr17L1VL494848582	NonProperStrand	2	chr17	94848966	94849046	LINE	L1_Mm	L1	chr17L1_Mm94848982	NonProperStrand	2	2	-inf
chr12	49105134	49105214	LINE	L1_Mur2	L1	chr12L1_Mur249103669	ProperStrand	1	chr12	49105283	49105373	LINE	L1_Mus3	L1	chr12L1_Mus349105236	ProperStrand	1	1	-inf
chr9	47841178	47841316	LINE	L1M3	L1	chr9L1M347840576	ProperStrand	1	chr10	10877627	10877647	protein_coding	Shprh	intron	ENSMUSG00000090112	NonProperStrand	3	1	-inf
chr11	109011794	109011848	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr13	48967403	48967446	antisense	Gm8619	.	ENSMUSG00000086889	NonProperStrand	1	1	-inf
chr5	121205008	121205090	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr8	70895758	70895858	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	3	-3.4434
chr15	14246891	14246913	LINE	L1Md_F2	L1	chr15L1Md_F214242394	ProperStrand	1	chr1	152567427	152567443	protein_coding	Hmcn1	intron	ENSMUSG00000066842	ProperStrand	13	1	-inf
chr5	16175673	16175763	LTR	IAPEz-int	ERVK	chr5IAPEz-int16173608	NonProperStrand	1	chr1	85213590	85213670	protein_coding	C130026I21Rik	intron	ENSMUSG00000052477	NonProperStrand	8	1	-inf
chr2	130276235	130276315	protein_coding	Ptpra	utr5	ENSMUSG00000027303	ProperStrand	261	chr13	49684298	49684426	protein_coding	Omd	intron	ENSMUSG00000048368	ProperStrand	43	3	-11.2297
chr16	23110390	23110452	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr17	90942183	90942200	protein_coding	Nrxn1	intron	ENSMUSG00000024109	NonProperStrand	8	1	-5.6991
chr9	17987815	17987836	LTR	RLTRETN_Mm	ERVK	chr9RLTRETN_Mm17987774	ProperStrand	13	chr16	23111300	23111351	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	1	-4.7116
chr17	72020560	72020650	DNA	URR1B	MER1_type	chr17URR1B72020537	NonProperStrand	1	chr17	72020962	72021042	SINE	B1_Mur1	Alu	chr17B1_Mur172020945	NonProperStrand	1	1	-inf
chr6	134830376	134830397	protein_coding	Gpr19	intron	ENSMUSG00000032641	NonProperStrand	1	chr4	56897679	56897746	protein_coding	D730040F13Rik	intron	ENSMUSG00000055296	ProperStrand	39	1	-inf
chr2	30399179	30399197	SINE	B4	B4	chr2B430398984	NonProperStrand	1	chr9	123462144	123462171	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr17	39846630	39846657	LTR	IAPEz-int	ERVK	chr17IAPEz-int39846222	ProperStrand	2358	chr1	63585448	63585509	protein_coding	Adam23	intron	ENSMUSG00000025964	ProperStrand	2	1	-7.0123
mmu-miR-6240	1	22	miRNA	mmu-miR-6240	.	mmu-miR-6240	ProperStrand	86	chr11	69669689	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	2	-5.0176
chr4	118137683	118137771	SINE	B3A	B2	chr4B3A118137674	NonProperStrand	1	chr4	118137579	118137659	SINE	MIRb	MIR	chr4MIRb118137555	NonProperStrand	1	1	-inf
chr16	35981616	35981639	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	chr7	127198057	127198073	protein_coding	Dnahc3	intron	ENSMUSG00000052273	ProperStrand	9	1	-9.8260
chr7	109520119	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr4	126563970	126564934	protein_coding	Zmym4	intron	ENSMUSG00000042446	NonProperStrand	18	1	-5.7862
chr4	43492970	43493059	SINE	B3	B2	chr4B343492960	NonProperStrand	40	chr19	8888535	8888591	protein_coding	Ttc9c	intron	ENSMUSG00000071660	ProperStrand	330	1	-4.3938
chr18	12762255	12762335	protein_coding	Ttc39c	intron	ENSMUSG00000024424	ProperStrand	1	chr6	53533605	53533695	protein_coding	Creb5	intron	ENSMUSG00000053007	NonProperStrand	3	1	-inf
chr17	39847659	39847678	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr18	53384639	53385183	SINE	B1F1	Alu	chr18B1F153384639	NonProperStrand	2	1	-6.4812
chr7	109520174	109520196	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr9	119102643	119102659	protein_coding	Slc22a13	intron	ENSMUSG00000074028	ProperStrand	7	1	-7.7387
chr1	122357190	122357239	LTR	MTEa	MaLR	chr1MTEa122356886	ProperStrand	128	chr4	132352956	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-3.3179
chr6	60976459	60976476	LINE	L1Md_A	L1	chr6L1Md_A60973104	NonProperStrand	1	chr16	19883805	19883927	protein_coding	A930003A15Rik	exon	ENSMUSG00000075330	ProperStrand	109	1	-inf
chr9	47889877	47889894	LINE	L1M2	L1	chr9L1M247889595	NonProperStrand	2	chr9	15313801	15313827	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	1	-10.7903
chr5	114851994	114852034	protein_coding	Ube3b	intron	ENSMUSG00000029577	ProperStrand	352	chr16	34357390	34360825	protein_coding	Kalrn	intron	ENSMUSG00000061751	NonProperStrand	10	1	-7.0357
chr10	8413471	8413561	LTR	MTE2b	MaLR	chr10MTE2b8413373	NonProperStrand	1	chr17	36486903	36486983	LTR	RMER19B	ERVK	chr17RMER19B36486739	NonProperStrand	1	1	-inf
chr4	86928610	86928629	LTR	ORR1B1	MaLR	chr4ORR1B186928275	NonProperStrand	5	chr13	44869612	44869637	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-7.6839
chr11	109011748	109011778	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr2	130344827	130344851	protein_coding	Ptpra	intron	ENSMUSG00000027303	NonProperStrand	4	1	-5.5999
chr5	78016654	78016744	LTR	MTA_Mm-int	MaLR	chr5MTA_Mm-int78016498	NonProperStrand	1	chr5	78016348	78016428	LTR	MTA_Mm	MaLR	chr5MTA_Mm78016103	NonProperStrand	1	1	-inf
chr13	67369112	67369202	protein_coding	Zfp458	intron	ENSMUSG00000055480	NonProperStrand	1	chr13	67179995	67180075	protein_coding	Zfp708	intron	ENSMUSG00000058883	ProperStrand	1	1	-inf
chr4	126034503	126034519	protein_coding	Eif2c3	intron	ENSMUSG00000028842	ProperStrand	2	chr7	144578560	144578578	protein_coding	9430038I01Rik	utr3	ENSMUSG00000040139	NonProperStrand	1	1	-inf
chr6	57132007	57132097	LINE	L1_Mus2	L1	chr6L1_Mus257129147	ProperStrand	1	chr6	57132435	57132515	LINE	L1_Mus2	L1	chr6L1_Mus257132272	ProperStrand	1	1	-inf
chr14	69243520	69243540	protein_coding	Adam28	intron	ENSMUSG00000014725	ProperStrand	3	chr5	107907358	107907476	protein_coding	Btbd8	intron	ENSMUSG00000070632	ProperStrand	151	1	-11.4177
chr14	31528880	31529502	protein_coding	Sfmbt1	intron	ENSMUSG00000006527	ProperStrand	2	chr7	4658493	4658509	protein_coding	Tmem150b	utr3	ENSMUSG00000046456	ProperStrand	1	1	-inf
chr4	43492785	43492810	SINE	B1_Mus2	Alu	chr4B1_Mus243492753	ProperStrand	39	chr13	44869606	44869684	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	1	-3.5315
chr17	39847977	39848052	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr16	20660095	20660365	protein_coding	Psmd2	intron	ENSMUSG00000006998	ProperStrand	3	1	-5.4090
chr14	75972553	75972607	LTR	MLT1A0	MaLR	chr14MLT1A075972543	NonProperStrand	14	chr3	88693957	88694058	protein_coding	Gon4l	intron	ENSMUSG00000054199	ProperStrand	8	1	-14.0075
chr11	109011749	109011776	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	chr7	120873334	120873350	LTR	ORR1B1	MaLR	chr7ORR1B1120873034	NonProperStrand	1	1	-inf
chr14	18061138	18061218	LINE	Lx3_Mus	L1	chr14Lx3_Mus18060199	NonProperStrand	1	chr14	18061525	18061615	LINE	Lx3_Mus	L1	chr14Lx3_Mus18061319	NonProperStrand	1	1	-inf
chr17	24719674	24719809	protein_coding	Pkd1	intron	ENSMUSG00000032855	NonProperStrand	167	chr13	97190548	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	4	-4.9737
chr2	72504575	72504594	LTR	ORR1E	MaLR	chr2ORR1E72504281	ProperStrand	1	chr2	90395146	90395185	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-inf
chr11	106501303	106501327	SINE	B1_Mus2	Alu	chr11B1_Mus2106501190	NonProperStrand	197	chr11	116843218	116843234	protein_coding	Mgat5b	intron	ENSMUSG00000043857	NonProperStrand	22	1	-6.5723
chr13	112578231	112578306	protein_coding	Map3k1	intron	ENSMUSG00000021754	ProperStrand	451	chr11	119280760	119280792	protein_coding	Rnf213	intron	ENSMUSG00000070327	ProperStrand	5	1	-8.0311
chr4	133015680	133015770	SINE	B2_Mm2	B2	chr4B2_Mm2133015643	NonProperStrand	1	chr4	133015874	133015954	SINE	MIR	MIR	chr4MIR133015842	NonProperStrand	1	1	-inf
chr7	90311036	90311126	LINE	L1_Mus3	L1	chr7L1_Mus390310808	NonProperStrand	1	chr7	90310725	90310805	LTR	MERVL_2A-int	ERVL	chr7MERVL_2A-int90310630	NonProperStrand	1	1	-inf
chr4	132309497	132310328	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr13	97190546	97190630	protein_coding	Ankdd1b	intron	ENSMUSG00000047117	ProperStrand	555	8	-3.5451
chr7	79505198	79505216	LTR	RMER2	ERV1	chr7RMER279505090	ProperStrand	1	chr9	123462102	123462140	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	1	-inf
chr4	97360372	97360462	protein_coding	E130114P18Rik	intron	ENSMUSG00000048747	ProperStrand	2	chrX	51814100	51814180	protein_coding	Gm16430	intron	ENSMUSG00000079590	ProperStrand	3	1	-20.8207
chr10	7135335	7135415	LINE	L1_Mus2	L1	chr10L1_Mus27134505	NonProperStrand	1	chr10	7148553	7148643	LTR	RLTR11B	ERVK	chr10RLTR11B7148446	NonProperStrand	1	1	-inf
chr5	121205007	121205095	protein_coding	Oas3	intron	ENSMUSG00000032661	NonProperStrand	319	chr12	80168219	80168277	protein_coding	Plekhh1	intron	ENSMUSG00000060716	NonProperStrand	3	1	-9.9198
chr8	43419162	43419242	LINE	L1_Mus4	L1	chr8L1_Mus443419013	NonProperStrand	1	chr8	43418908	43418998	LINE	Lx4A	L1	chr8Lx4A43418415	ProperStrand	1	1	-inf
chr3	76625422	76625502	LINE	L1MA8	L1	chr3L1MA876625333	ProperStrand	1	chr3	76625847	76625937	LINE	Lx2	L1	chr3Lx276625562	ProperStrand	1	1	-inf
chr2	90395145	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	chr2	35728774	35728790	protein_coding	Ttll11	intron	ENSMUSG00000026885	ProperStrand	4	1	-7.1761
chr12	75595709	75595772	LTR	MLT1F2	MaLR	chr12MLT1F275595258	ProperStrand	1	chr18	77751383	77751445	protein_coding	Rnf165	intron	ENSMUSG00000025427	ProperStrand	6	1	-inf
chr2	5379296	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr1	89461837	89461855	protein_coding	Neu2	intron	ENSMUSG00000079434	ProperStrand	3	1	-8.3841
chr8	95528961	95529041	LINE	L1VL4	L1	chr8L1VL495528546	NonProperStrand	1	chr8	95529435	95529525	LINE	L1VL4	L1	chr8L1VL495529337	NonProperStrand	1	1	-inf
chr13	15883151	15883241	LINE	L1_Mur3	L1	chr13L1_Mur315883120	ProperStrand	1	chr11	71091207	71091287	polymorphic_pseudogene	Nlrp1c-ps	.	ENSMUSG00000092528	NonProperStrand	1	1	-inf
chr14	16431173	16431190	LINE	L1VL4	L1	chr14L1VL416430893	ProperStrand	1	chr15	32241893	32241920	protein_coding	Sema5a	intron	ENSMUSG00000022231	NonProperStrand	4	1	-inf
chr5	146260994	146261191	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr8	70895758	70895867	protein_coding	Csgalnact1	intron	ENSMUSG00000036356	ProperStrand	292	5	-4.0388
chr13	20990738	20990757	protein_coding	Aoah	intron	ENSMUSG00000021322	NonProperStrand	4	chr2	90395141	90395186	protein_coding	Ptprj	intron	ENSMUSG00000025314	ProperStrand	894	1	-7.1761
chr16	23111320	23111373	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr10	88475389	88475405	protein_coding	Ano4	intron	ENSMUSG00000035189	ProperStrand	11	1	-5.0462
chr16	22657014	22657030	protein_coding	Dgkg	utr5	ENSMUSG00000022861	NonProperStrand	3	chr4	132309940	132310013	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-8.6506
chr17	39843716	39843770	LTR	MTB_Mm-int	MaLR	chr17MTB_Mm-int39843717	NonProperStrand	133	chr5	129020567	129020718	LTR	MTC	MaLR	chr5MTC129020472	NonProperStrand	1	1	-inf
chr4	47138581	47138661	LTR	MT2A	ERVL	chr4MT2A47138414	NonProperStrand	1	chr4	47139183	47139273	LTR	RMER2	ERV1	chr4RMER247138884	NonProperStrand	1	1	-inf
chr6	109509859	109509949	LINE	Lx4B	L1	chr6Lx4B109509720	NonProperStrand	1	chr6	109510146	109510226	LINE	Lx4B	L1	chr6Lx4B109509989	NonProperStrand	1	1	-inf
chr15	79861492	79861572	LTR	MTEb	MaLR	chr15MTEb79861231	NonProperStrand	1	chr15	79861599	79861689	SINE	B3A	B2	chr15B3A79861620	ProperStrand	1	1	-inf
chr13	85186714	85186730	LINE	Lx3B	L1	chr13Lx3B85185426	ProperStrand	1	chr17	39847990	39848057	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	NonProperStrand	96	1	-inf
chr1	133610238	133610255	DNA	Tigger7	MER2_type	chr1Tigger7133610186	ProperStrand	1	chr3	35826968	35826985	protein_coding	Dcun1d1	intron	ENSMUSG00000027708	ProperStrand	9	1	-inf
chr6	120037918	120038010	LTR	IAPLTR2a	ERVK	chr6IAPLTR2a120037933	ProperStrand	1	chr11	75493919	75493935	protein_coding	Crk	intron	ENSMUSG00000017776	NonProperStrand	1	1	-inf
chr8	36443279	36443369	protein_coding	Ppp1r3b	intron	ENSMUSG00000046794	ProperStrand	1	chr3	31205943	31206023	protein_coding	Slc7a14	intron	ENSMUSG00000069072	ProperStrand	5	1	-inf
chrX	37082966	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr2	181013439	181013881	protein_coding	Gmeb2	intron	ENSMUSG00000038705	NonProperStrand	1	1	-inf
chr18	37967888	37968222	protein_coding	Pcdhga9	exon	ENSMUSG00000023036	NonProperStrand	7	chr16	87418949	87418972	protein_coding	Ltn1	intron	ENSMUSG00000052299	ProperStrand	3	1	-17.7147
chr15	98145810	98145900	SINE	B3A	B2	chr15B3A98145775	ProperStrand	1	chr15	98145554	98145634	SINE	B4A	B4	chr15B4A98145387	NonProperStrand	1	1	-inf
chr3	104882647	104882665	LTR	MTA_Mm	MaLR	chr3MTA_Mm104882557	NonProperStrand	1	chr4	132352895	132352980	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-inf
chrX	166385400	166385416	protein_coding	Mid1	intron	ENSMUSG00000035299	NonProperStrand	3	chr1	131573998	131574033	protein_coding	Thsd7b	intron	ENSMUSG00000042581	ProperStrand	64	1	-13.1429
chr17	39847170	39847218	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847054	ProperStrand	1034	chr5	76980363	76980428	protein_coding	Exoc1	intron	ENSMUSG00000036435	ProperStrand	4	1	-6.8874
chr7	113289568	113289648	LINE	L1Md_F	L1	chr7L1Md_F113289398	NonProperStrand	1	chr7	113289810	113289900	LINE	Lx8	L1	chr7Lx8113289697	NonProperStrand	1	1	-inf
chr9	120130433	120130500	SINE	B4	B4	chr9B4120130322	NonProperStrand	162	chr10	105238495	105238520	protein_coding	BC067068	intron	ENSMUSG00000036009	NonProperStrand	42	1	-5.6701
chr17	39847564	39847597	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr19	55643712	55643729	protein_coding	Vti1a	intron	ENSMUSG00000024983	NonProperStrand	4	1	-4.7422
chr18	35554565	35557107	protein_coding	Sil1	intron	ENSMUSG00000024357	NonProperStrand	190	chr9	15313802	15313932	protein_coding	BC017612	intron	ENSMUSG00000058173	ProperStrand	357	4	-6.2879
chr6	94760775	94760796	LINE	Lx7	L1	chr6Lx794760567	ProperStrand	2	chr2	122123775	122123791	protein_coding	Duox2	intron	ENSMUSG00000068452	ProperStrand	469	1	-10.2439
chr15	55105331	55105350	LINE	Lx5	L1	chr15Lx555105298	ProperStrand	1	chr17	39847443	39847475	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-inf
chr7	109520119	109521354	protein_coding	Stim1	intron	ENSMUSG00000030987	ProperStrand	361	chr13	44869580	44870024	protein_coding	Jarid2	intron	ENSMUSG00000038518	NonProperStrand	537	6	-4.3597
chr1	167340339	167340393	protein_coding	Dcaf6	intron	ENSMUSG00000026571	NonProperStrand	2	chr16	11144058	11144148	protein_coding	Zc3h7a	intron	ENSMUSG00000037965	ProperStrand	46	1	-14.9074
chr15	39841928	39841944	LINE	L1Md_F2	L1	chr15L1Md_F239840769	NonProperStrand	3	chr17	39847864	39847888	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	1	-5.4090
chr2	5379294	5379347	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	chr7	25272507	25272525	protein_coding	Cadm4	intron	ENSMUSG00000054793	ProperStrand	5	1	-7.1918
chr16	85796721	85796747	protein_coding	Adamts1	intron	ENSMUSG00000022893	ProperStrand	1	chr2	5379281	5379339	protein_coding	Camk1d	intron	ENSMUSG00000039145	ProperStrand	688	1	-inf
chrX	37082915	37082997	LINE	Lx9	L1	chrXLx937082407	ProperStrand	94	chr11	69667930	69669779	protein_coding	Tnk1	intron	ENSMUSG00000001583	ProperStrand	346	3	-7.0991
chr17	45567986	45568086	protein_coding	Cdc5l	intron	ENSMUSG00000023932	ProperStrand	4	chr9	64174880	64174898	protein_coding	Dis3l	intron	ENSMUSG00000032396	NonProperStrand	9	1	-16.4751
chr4	132309940	132310014	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	chr16	23111703	23111735	snoRNA	ENSMUSG00000065208_SNORA4	.	ENSMUSG00000065208	ProperStrand	26	1	-4.0819
chr5	146261153	146261219	LTR	MMERVK10C-int	ERVK	chr5MMERVK10C-int146260303	NonProperStrand	550	chr11	47223651	47223670	protein_coding	Sgcd	intron	ENSMUSG00000020354	ProperStrand	14	1	-5.4699
chr18	10052131	10052156	LTR	MMERGLN-int	ERV1	chr18MMERGLN-int10052132	NonProperStrand	47	chr4	132352899	132352985	SINE	B1_Mm	Alu	chr4B1_Mm132352907	ProperStrand	183	1	-5.2127
chr11	94944605	94944922	SINE	PB1D10	Alu	chr11PB1D1094944752	ProperStrand	4	chr16	35981607	35981645	protein_coding	Kpna1	intron	ENSMUSG00000022905	ProperStrand	97	1	-11.6138
chr16	23111315	23111372	protein_coding-noncoding	Eif4a2	utr5	ENSMUSG00000022884	ProperStrand	879	chr18	60699675	60700452	protein_coding	Dctn4	intron	ENSMUSG00000024603	NonProperStrand	2	1	-8.9865
chr11	109011792	109011849	LINE	Lx2B	L1	chr11Lx2B109011319	ProperStrand	1984	mmu-miR-3473b	0	18	miRNA	mmu-miR-3473b	.	mmu-miR-3473b	ProperStrand	8	2	-7.1072
chr4	46502900	46502961	protein_coding-noncoding	Nans	utr5	ENSMUSG00000028334	NonProperStrand	1	chr4	46502648	46502727	protein_coding	Nans	intron	ENSMUSG00000028334	NonProperStrand	2	1	-inf
chr17	39847494	39847524	LTR	IAPEz-int	ERVK	chr17IAPEz-int39847329	ProperStrand	3075	chr5	115489522	115489554	protein_coding	Sppl3	intron	ENSMUSG00000029550	ProperStrand	6	1	-3.8783
chr3	114513327	114513407	LTR	RMER5	ERV1	chr3RMER5114513319	NonProperStrand	1	chr3	114513172	114513262	Simple_repeat	(TA)n	Simple_repeat	chr3(TA)n114513178	NonProperStrand	1	1	-inf
chr10	67709127	67709144	protein_coding	Arid5b	intron	ENSMUSG00000019947	NonProperStrand	4	chr4	132309940	132310013	protein_coding	Smpdl3b	intron	ENSMUSG00000028885	NonProperStrand	602	1	-7.9626
chr18	44420199	44420215	LTR	IAPEz-int	ERVK	chr18IAPEz-int44418347	NonProperStrand	1	chr17	39843353	39843427	Simple_repeat	(GAAA)n	Simple_repeat	chr17(GAAA)n39843364	NonProperStrand	65	1	-inf
chr14	48811267	48811347	protein_coding	Peli2	intron	ENSMUSG00000021846	NonProperStrand	2	chr14	33154593	33154683	protein_coding	Ogdhl	intron	ENSMUSG00000021913	ProperStrand	1	1	-inf
chr9	123462112	123462150	protein_coding	Sacm1l	intron	ENSMUSG00000025240	ProperStrand	1261	chr6	97162855	97162894	protein_coding	Arl6ip5	intron	ENSMUSG00000035199	NonProperStrand	7	1	-5.2735