MARIO-tools
0.4
MARIO-tools 0.4 documentation
Analysis pipeline
Visualization of local RNA-RNA interactions
Visualization of intra-RNA interactions by heatmap
Visualization of global RNA-RNA interactome
Python APIs created for this project
Resources of strong interactions from two mouse cell types
MARIO-tools
Docs
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Index
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__init__() (data_structure.annotated_bed method)
(RNAstructure.RNAstructure method)
__lt__() (data_structure.annotated_bed method)
__str__() (data_structure.annotated_bed method)
A
AnnoMax (module)
annotated_bed (class in data_structure)
annotation() (in module AnnoMax)
C
Cluster() (data_structure.annotated_bed method)
D
dot2block() (in module RNAstructure)
DuplexFold() (RNAstructure.RNAstructure method)
F
Fold() (RNAstructure.RNAstructure method)
O
optimize_annotation() (in module AnnoMax)
overlap() (data_structure.annotated_bed method)
(in module AnnoMax)
P
Plot_Circos.R
Plot_interaction.py
Plot_interaction_heatmap.py
R
recoverFragment
remove_dup_PE.py
RNAstructure (class in RNAstructure)
(module)
S
scorer() (RNAstructure.RNAstructure method)
Select_strongInteraction_pp.py
split_library_pairend.py
split_partner.py
Stitch-seq_Aligner.py
Stitch-seq_Annotation.py
Subtype() (in module AnnoMax)
U
Update() (data_structure.annotated_bed method)