| # the strong interactions here are called from the clusters based on genomic locations | |||||
| # for each cell type, there are two columns, # the first column gives the number of strong interactions with this interaction type, # the second column gives the number of mapped pairs that support this interaction type |
|||||
| Interaction type | E14 (UV) | MEF | |||
| # of Interaction | # of mapped pairs | # of Interaction | # of mapped pairs | ||
| protein_coding-snoRNA | 8043 | 166487 | 501 | 34977 | |
| snoRNA-snoRNA | 4409 | 192251 | 635 | 10195 | |
| novel-snoRNA | 3550 | 96900 | 327 | 22745 | |
| protein_coding-protein_coding | 1300 | 59320 | 1041 | 52679 | |
| novel-protein_coding | 1078 | 60818 | 1087 | 58335 | |
| LINE-snoRNA | 721 | 24969 | 111 | 5940 | |
| SINE-protein_coding | 149 | 7109 | 671 | 26287 | |
| snRNA-snoRNA | 709 | 12545 | 0 | 241 | |
| LTR-snoRNA | 610 | 13908 | 53 | 3217 | |
| LINE-protein_coding | 242 | 16404 | 317 | 22097 | |
| novel-novel | 268 | 21799 | 271 | 17322 | |
| Low_complexity-protein_coding | 314 | 7611 | 187 | 10063 | |
| SINE-snoRNA | 360 | 8647 | 90 | 9714 | |
| snoRNA-tRNA | 408 | 6870 | 0 | 462 | |
| SINE-novel | 69 | 3559 | 333 | 13706 | |
| LTR-protein_coding | 139 | 9807 | 230 | 10287 | |
| protein_coding-snRNA | 349 | 8569 | 9 | 681 | |
| lincRNA-snoRNA | 337 | 6529 | 5 | 802 | |
| LINE-novel | 110 | 8366 | 193 | 13514 | |
| Low_complexity-novel | 152 | 4172 | 132 | 7289 | |
| protein_coding-tRNA | 176 | 7394 | 73 | 2776 | |
| Low_complexity-snoRNA | 190 | 6324 | 22 | 1016 | |
| LTR-novel | 65 | 5050 | 124 | 5676 | |
| snRNA-snRNA | 178 | 2118 | 2 | 54 | |
| novel-snRNA | 140 | 4853 | 9 | 482 | |
| novel-tRNA | 56 | 3447 | 87 | 2092 | |
| lincRNA-protein_coding | 94 | 4453 | 46 | 2743 | |
| pseudogene-snoRNA | 133 | 2245 | 0 | 50 | |
| Simple_repeat-snoRNA | 98 | 1542 | 0 | 200 | |
| LINE-SINE | 31 | 993 | 67 | 6704 | |
| Low_complexity-SINE | 38 | 729 | 53 | 4504 | |
| protein_coding-pseudogene | 71 | 1793 | 10 | 430 | |
| LTR-SINE | 14 | 630 | 63 | 2533 | |
| DNA-protein_coding | 5 | 682 | 66 | 1000 | |
| LINE-Low_complexity | 42 | 972 | 22 | 1106 | |
| LINE-LTR | 20 | 1334 | 40 | 1926 | |
| misc_RNA-protein_coding | 57 | 767 | 3 | 125 | |
| LINE-LINE | 29 | 3545 | 31 | 3382 | |
| LTR-Low_complexity | 23 | 724 | 32 | 1010 | |
| Simple_repeat-protein_coding | 37 | 1533 | 18 | 1001 | |
| lincRNA-novel | 36 | 2264 | 18 | 1530 | |
| SINE-tRNA | 19 | 448 | 35 | 991 | |
| Low_complexity-tRNA | 48 | 697 | 0 | 40 | |
| LTR-LTR | 16 | 1201 | 27 | 1261 | |
| novel-pseudogene | 38 | 1043 | 4 | 218 | |
| LINE-snRNA | 37 | 1237 | 4 | 115 | |
| misc_RNA-snoRNA | 39 | 1056 | 1 | 53 | |
| misc_RNA-novel | 31 | 899 | 4 | 108 | |
| SINE-SINE | 4 | 271 | 31 | 1093 | |
| Low_complexity-Low_complexity | 31 | 428 | 3 | 53 | |
| Simple_repeat-novel | 26 | 686 | 8 | 581 | |
| SINE-lincRNA | 7 | 276 | 24 | 818 | |
| DNA-snoRNA | 29 | 1160 | 0 | 135 | |
| snRNA-tRNA | 29 | 487 | 0 | 10 | |
| LINE-tRNA | 27 | 1009 | 1 | 342 | |
| LTR-snRNA | 27 | 767 | 1 | 56 | |
| DNA-novel | 3 | 863 | 23 | 666 | |
| miRNA-snoRNA | 25 | 459 | 0 | 28 | |
| antisense-snoRNA | 21 | 422 | 0 | 75 | |
| miRNA-protein_coding | 18 | 485 | 1 | 71 | |
| Low_complexity-snRNA | 17 | 312 | 0 | 10 | |
| LINE-lincRNA | 11 | 650 | 6 | 503 | |
| Satellite-protein_coding | 9 | 123 | 7 | 88 | |
| SINE-snRNA | 8 | 417 | 7 | 229 | |
| SINE-Simple_repeat | 0 | 95 | 15 | 392 | |
| Low_complexity-lincRNA | 8 | 317 | 5 | 130 | |
| Other-snoRNA | 10 | 266 | 2 | 133 | |
| Satellite-lincRNA | 6 | 77 | 6 | 62 | |
| lincRNA-snRNA | 12 | 306 | 0 | 13 | |
| DNA-LTR | 4 | 60 | 6 | 106 | |
| lincRNA-lincRNA | 10 | 320 | 0 | 41 | |
| Low_complexity-Simple_repeat | 8 | 86 | 1 | 29 | |
| SINE-pseudogene | 4 | 64 | 5 | 105 | |
| Other-protein_coding | 2 | 193 | 7 | 318 | |
| lincRNA-tRNA | 8 | 267 | 0 | 56 | |
| processed_transcript-snoRNA | 8 | 149 | 0 | 10 | |
| miRNA-miRNA | 8 | 20 | 0 | 0 | |
| LTR-pseudogene | 5 | 119 | 2 | 43 | |
| LTR-tRNA | 4 | 577 | 3 | 277 | |
| LINE-misc_RNA | 6 | 103 | 0 | 23 | |
| miRNA-novel | 6 | 254 | 0 | 41 | |
| processed_transcript-protein_coding | 5 | 209 | 1 | 76 | |
| antisense-protein_coding | 6 | 294 | 0 | 247 | |
| LINE-Simple_repeat | 3 | 166 | 3 | 162 | |
| LTR-lincRNA | 2 | 383 | 4 | 265 | |
| pseudogene-snRNA | 5 | 107 | 0 | 0 | |
| Low_complexity-miRNA | 5 | 34 | 0 | 2 | |
| LINE-pseudogene | 5 | 185 | 0 | 36 | |
| Simple_repeat-snRNA | 5 | 85 | 0 | 3 | |
| Other-novel | 1 | 84 | 4 | 184 | |
| DNA-SINE | 0 | 37 | 5 | 203 | |
| pseudogene-tRNA | 4 | 92 | 0 | 1 | |
| pseudogene-pseudogene | 4 | 147 | 0 | 5 | |
| Low_complexity-pseudogene | 4 | 76 | 0 | 8 | |
| Simple_repeat-lincRNA | 4 | 53 | 0 | 27 | |
| DNA-LINE | 0 | 74 | 4 | 117 | |
| lincRNA-misc_RNA | 3 | 31 | 0 | 3 | |
| LTR-Simple_repeat | 2 | 123 | 1 | 106 | |
| Other-SINE | 0 | 9 | 3 | 98 | |
| SINE-antisense | 1 | 13 | 2 | 73 | |
| misc_RNA-snRNA | 3 | 63 | 0 | 1 | |
| misc_RNA-misc_RNA | 1 | 96 | 1 | 5 | |
| Low_complexity-antisense | 1 | 30 | 1 | 17 | |
| Low_complexity-misc_RNA | 2 | 19 | 0 | 4 | |
| SINE-misc_RNA | 0 | 18 | 2 | 38 | |
| Simple_repeat-tRNA | 2 | 52 | 0 | 8 | |
| LINE-Other | 1 | 34 | 1 | 94 | |
| DNA-tRNA | 1 | 45 | 0 | 8 | |
| Satellite-snoRNA | 1 | 19 | 0 | 7 | |
| misc_RNA-tRNA | 1 | 26 | 0 | 1 | |
| miRNA-tRNA | 1 | 26 | 0 | 0 | |
| misc_RNA-pseudogene | 1 | 5 | 0 | 0 | |
| miRNA-snRNA | 1 | 19 | 0 | 0 | |
| miRNA-misc_RNA | 1 | 7 | 0 | 0 | |
| Simple_repeat-pseudogene | 1 | 22 | 0 | 1 | |
| Unknown-protein_coding | 1 | 22 | 0 | 15 | |
| Low_complexity-Other | 0 | 17 | 1 | 22 | |
| lincRNA-pseudogene | 1 | 37 | 0 | 6 | |
| LTR-Other | 0 | 16 | 1 | 29 | |
| antisense-novel | 0 | 143 | 1 | 129 | |
| SINE-miRNA | 1 | 29 | 0 | 18 | |
| LTR-miRNA | 1 | 48 | 0 | 7 | |
| Simple_repeat-Simple_repeat | 1 | 86 | 0 | 21 | |
| tRNA-tRNA | 1 | 174 | 0 | 13 | |
| Unknown-snoRNA | 1 | 36 | 0 | 3 | |
| Low_complexity-Satellite | 0 | 1 | 1 | 4 | |
| sense_intronic-snoRNA | 1 | 18 | 0 | 0 | |
| DNA-pseudogene | 1 | 12 | 0 | 3 | |
| DNA-Low_complexity | 1 | 55 | 0 | 30 | |