Index

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__init__() (data_structure.annotated_bed method) (RNAstructure.RNAstructure method) __lt__() (data_structure.annotated_bed method)

__str__() (data_structure.annotated_bed method)

A

annotated_bed (class in data_structure) Annotation (module)

annotation() (in module Annotation)

C

Cluster() (data_structure.annotated_bed method)

D

dot2block() (in module RNAstructure)

DuplexFold() (RNAstructure.RNAstructure method)

F

Fold() (RNAstructure.RNAstructure method)

I

Interaction_type_enrichment.R intersectInteraction.py

intersectInteraction_genePair.R

O

overlap() (data_structure.annotated_bed method) (in module Annotation)

P

Plot_Circos.R Plot_interaction.py

Plot_interaction_heatmap.py

R

recoverFragment remove_dup_PE.py

RNA_structure_prediction.py RNAstructure (class in RNAstructure) (module)

S

scorer() (RNAstructure.RNAstructure method) Select_strongInteraction_pp.py snoRNA_mRNA_statistics.py split_library_pairend.py

split_partner.py Stitch-seq_Aligner.py Subtype() (in module Annotation)

U

Update() (data_structure.annotated_bed method)