MARIO-tools
MARIO-tools 0.3 documentation
Overview
Installation
Support
Analysis pipeline
Overview
Pipeline
Other functions
Visualization of local RNA-RNA interactions
Prerequirement
Run the program to generate visualization
Example of result graph
Visualization of intra-RNA interactions by heatmap
Prerequirement
Run the program to generate heatmap for interactions within RNA molecule
Example of result graph
Visualization of global RNA-RNA interactome
Prerequirement
Run the program to generate visualization
Example of result graph
Visualization of interaction types enrichment
Prerequirement
Run the program to generate visualization for enrichment of different types of interactions
Example of result graph
Python APIs created for this project
Annotation module
“annotated_bed” data class
“RNAstructure” class
Resources of strong interactions from two mouse cell types
Description of different samples
Resources of Strong Interactions
Target of miRNA in mir-290-295 clusters and mmu-mir-703
MARIO-tools
Docs
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Python Module Index
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Annotation
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RNAstructure